2025-01-31 09:31:52,964 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:52,967 INFO Extracting cutcounts from bam file 2025-01-31 09:33:37,452 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:33:37,499 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:33:37,501 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:33:37,502 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:33:37,503 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:33:37,503 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:33:37,515 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:33:38,313 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:33:38,591 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:33:38,735 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:33:38,784 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:33:39,000 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:33:39,090 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:33:39,302 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:33:39,660 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:33:39,937 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:33:40,175 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:33:40,200 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:33:40,270 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:33:40,620 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:33:40,704 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:33:40,707 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:33:41,310 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:33:41,310 INFO Total cutcounts = 17422286 2025-01-31 09:33:41,316 INFO Smoothing signal using MODWT 2025-01-31 09:33:41,318 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:33:41,353 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:41,357 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:41,358 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:41,358 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:41,359 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:33:41,376 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:06,915 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:09,055 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:11,633 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:16,067 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:37,052 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:52,642 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:55,909 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:56,529 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:58,959 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:11,430 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:13,373 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:32,354 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:22,797 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:26,033 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:31,365 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:25,846 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:40:25,846 INFO Estimating parameters of background model 2025-01-31 09:40:25,846 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:40:31,050 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:40:31,146 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:40:31,285 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:40:31,746 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:40:32,112 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:40:32,585 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:40:49,369 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:40:49,371 DEBUG chr3: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.017 2025-01-31 09:40:50,141 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:40:50,143 DEBUG chr5: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.017 2025-01-31 09:40:50,687 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:40:50,689 DEBUG chr4: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.016 2025-01-31 09:40:51,703 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:40:51,705 DEBUG chrX: Signal quantile: 0.995. signal threshold: 9. Best RMSEA: 0.026 2025-01-31 09:40:52,153 DEBUG chr3 total SNP count: 256087 2025-01-31 09:40:52,153 DEBUG chr3 length: 160039680 2025-01-31 09:40:52,153 DEBUG ----------------------------------------- 2025-01-31 09:40:52,153 INFO Processing SNPs in chr3 2025-01-31 09:40:52,404 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256087)] 2025-01-31 09:40:52,580 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:53,180 DEBUG chr5 total SNP count: 249354 2025-01-31 09:40:53,180 DEBUG chr5 length: 151834684 2025-01-31 09:40:53,180 DEBUG ----------------------------------------- 2025-01-31 09:40:53,180 INFO Processing SNPs in chr5 2025-01-31 09:40:53,432 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 249354)] 2025-01-31 09:40:53,493 DEBUG chr4 total SNP count: 251007 2025-01-31 09:40:53,493 DEBUG chr4 length: 156508116 2025-01-31 09:40:53,493 DEBUG ----------------------------------------- 2025-01-31 09:40:53,493 INFO Processing SNPs in chr4 2025-01-31 09:40:53,606 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:53,770 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:40:53,772 DEBUG chr2: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.017 2025-01-31 09:40:53,877 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 61840), (61840, 251007)] 2025-01-31 09:40:53,999 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:54,738 DEBUG chrX total SNP count: 234877 2025-01-31 09:40:54,738 DEBUG chrX length: 171031299 2025-01-31 09:40:54,738 DEBUG ----------------------------------------- 2025-01-31 09:40:54,738 INFO Processing SNPs in chrX 2025-01-31 09:40:55,112 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32318), (32318, 32320), (32320, 32357), (32357, 62823), (62823, 168660), (168660, 234877)] 2025-01-31 09:40:55,224 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:55,788 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:40:55,790 DEBUG chr1: Signal quantile: 0.993. signal threshold: 14. Best RMSEA: 0.017 2025-01-31 09:40:56,687 DEBUG chr2 total SNP count: 306063 2025-01-31 09:40:56,688 DEBUG chr2 length: 182113224 2025-01-31 09:40:56,688 DEBUG ----------------------------------------- 2025-01-31 09:40:56,688 INFO Processing SNPs in chr2 2025-01-31 09:40:57,155 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 298235), (298235, 306063)] 2025-01-31 09:40:57,361 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:59,044 DEBUG chr1 total SNP count: 333127 2025-01-31 09:40:59,045 DEBUG chr1 length: 195471971 2025-01-31 09:40:59,045 DEBUG ----------------------------------------- 2025-01-31 09:40:59,045 INFO Processing SNPs in chr1 2025-01-31 09:40:59,060 DEBUG Segmenting atomic regions: 2025-01-31 09:40:59,162 DEBUG Processing 1/106 atomic regions from SNP 0 to 603 for chrX (subchromosome 1 of 6). 2025-01-31 09:40:59,378 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 333127)] 2025-01-31 09:40:59,606 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:40:59,800 DEBUG Processing 2/106 atomic regions from SNP 303 to 906 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,003 DEBUG Processing 3/106 atomic regions from SNP 606 to 1209 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,208 DEBUG Processing 4/106 atomic regions from SNP 909 to 1512 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,414 DEBUG Processing 5/106 atomic regions from SNP 1212 to 1815 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,620 DEBUG Processing 6/106 atomic regions from SNP 1515 to 2117 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:00,826 DEBUG Processing 7/106 atomic regions from SNP 1817 to 2419 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:01,032 DEBUG Processing 8/106 atomic regions from SNP 2119 to 2721 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:01,237 DEBUG Segmenting atomic regions: 2025-01-31 09:41:01,240 DEBUG Processing 9/106 atomic regions from SNP 2421 to 3023 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:01,344 DEBUG Processing 1/205 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:01,448 DEBUG Processing 10/106 atomic regions from SNP 2723 to 3325 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:01,653 DEBUG Processing 11/106 atomic regions from SNP 3025 to 3627 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:01,861 DEBUG Processing 12/106 atomic regions from SNP 3327 to 3929 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:02,067 DEBUG Processing 13/106 atomic regions from SNP 3629 to 4231 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:02,075 DEBUG Processing 2/205 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,285 DEBUG Processing 3/205 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,299 DEBUG Processing 14/106 atomic regions from SNP 3931 to 4533 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:02,503 DEBUG Processing 4/205 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,540 DEBUG Processing 15/106 atomic regions from SNP 4233 to 4835 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:02,714 DEBUG Processing 5/205 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:02,781 DEBUG Processing 16/106 atomic regions from SNP 4535 to 5137 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:02,921 DEBUG Processing 6/205 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,019 DEBUG Processing 17/106 atomic regions from SNP 4837 to 5439 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:03,127 DEBUG Processing 7/205 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,251 DEBUG Processing 18/106 atomic regions from SNP 5139 to 5741 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:03,333 DEBUG Processing 8/205 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,457 DEBUG Processing 19/106 atomic regions from SNP 5441 to 6043 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:03,539 DEBUG Processing 9/205 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,662 DEBUG Processing 20/106 atomic regions from SNP 5743 to 6345 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:03,746 DEBUG Processing 10/205 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:03,868 DEBUG Processing 21/106 atomic regions from SNP 6045 to 6647 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:03,953 DEBUG Processing 11/205 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,086 DEBUG Processing 22/106 atomic regions from SNP 6347 to 6949 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:04,158 DEBUG Processing 12/205 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,308 DEBUG Processing 23/106 atomic regions from SNP 6649 to 7251 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:04,363 DEBUG Processing 13/205 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,513 DEBUG Processing 24/106 atomic regions from SNP 6951 to 7553 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:04,571 DEBUG Processing 14/205 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,719 DEBUG Processing 25/106 atomic regions from SNP 7253 to 7855 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:04,777 DEBUG Processing 15/205 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:04,925 DEBUG Processing 26/106 atomic regions from SNP 7555 to 8157 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:04,983 DEBUG Processing 16/205 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,130 DEBUG Processing 27/106 atomic regions from SNP 7857 to 8459 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:05,189 DEBUG Processing 17/205 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,336 DEBUG Processing 28/106 atomic regions from SNP 8159 to 8761 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:05,394 DEBUG Processing 18/205 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,546 DEBUG Processing 29/106 atomic regions from SNP 8461 to 9063 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:05,606 DEBUG Processing 19/205 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,761 DEBUG Processing 30/106 atomic regions from SNP 8763 to 9365 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:05,813 DEBUG Processing 20/205 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:05,999 DEBUG Processing 31/106 atomic regions from SNP 9065 to 9667 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:06,018 DEBUG Processing 21/205 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,218 DEBUG Processing 32/106 atomic regions from SNP 9367 to 9969 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:06,227 DEBUG Processing 22/205 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,425 DEBUG Processing 33/106 atomic regions from SNP 9669 to 10271 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:06,435 DEBUG Processing 23/205 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,630 DEBUG Processing 34/106 atomic regions from SNP 9971 to 10573 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:06,642 DEBUG Processing 24/205 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:06,835 DEBUG Processing 35/106 atomic regions from SNP 10273 to 10875 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:06,850 DEBUG Processing 25/205 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,040 DEBUG Processing 36/106 atomic regions from SNP 10575 to 11177 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:07,056 DEBUG Processing 26/205 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,245 DEBUG Processing 37/106 atomic regions from SNP 10877 to 11479 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:07,264 DEBUG Processing 27/205 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,470 DEBUG Processing 28/205 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,483 DEBUG Processing 38/106 atomic regions from SNP 11179 to 11781 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:07,679 DEBUG Processing 29/205 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,720 DEBUG Processing 39/106 atomic regions from SNP 11481 to 12083 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:07,907 DEBUG Processing 30/205 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:07,942 DEBUG Processing 40/106 atomic regions from SNP 11783 to 12385 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:08,124 DEBUG Processing 31/205 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,157 DEBUG Processing 41/106 atomic regions from SNP 12085 to 12687 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:08,332 DEBUG Processing 32/205 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,378 DEBUG Processing 42/106 atomic regions from SNP 12387 to 12989 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:08,540 DEBUG Processing 33/205 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,609 DEBUG Processing 43/106 atomic regions from SNP 12689 to 13291 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:08,746 DEBUG Processing 34/205 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:08,826 DEBUG Processing 44/106 atomic regions from SNP 12991 to 13593 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:08,952 DEBUG Processing 35/205 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,055 DEBUG Processing 45/106 atomic regions from SNP 13293 to 13895 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:09,159 DEBUG Processing 36/205 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,282 DEBUG Processing 46/106 atomic regions from SNP 13595 to 14197 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:09,365 DEBUG Processing 37/205 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,488 DEBUG Processing 47/106 atomic regions from SNP 13897 to 14499 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:09,574 DEBUG Processing 38/205 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,693 DEBUG Processing 48/106 atomic regions from SNP 14199 to 14801 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:09,785 DEBUG Processing 39/205 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:09,909 DEBUG Processing 49/106 atomic regions from SNP 14501 to 15103 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:09,995 DEBUG Processing 40/205 atomic regions from SNP 11739 to 12339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,118 DEBUG Processing 50/106 atomic regions from SNP 14803 to 15405 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:10,205 DEBUG Processing 41/205 atomic regions from SNP 12039 to 12639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,332 DEBUG Processing 51/106 atomic regions from SNP 15105 to 15707 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:10,414 DEBUG Processing 42/205 atomic regions from SNP 12339 to 12939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,542 DEBUG Processing 52/106 atomic regions from SNP 15407 to 16009 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:10,645 DEBUG Processing 43/205 atomic regions from SNP 12639 to 13239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,750 DEBUG Processing 53/106 atomic regions from SNP 15709 to 16311 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:10,883 DEBUG Processing 44/205 atomic regions from SNP 12939 to 13539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:10,956 DEBUG Processing 54/106 atomic regions from SNP 16011 to 16613 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:11,115 DEBUG Processing 45/205 atomic regions from SNP 13239 to 13839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,166 DEBUG Processing 55/106 atomic regions from SNP 16313 to 16915 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:11,323 DEBUG Processing 46/205 atomic regions from SNP 13539 to 14139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,378 DEBUG Processing 56/106 atomic regions from SNP 16615 to 17217 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:11,529 DEBUG Processing 47/205 atomic regions from SNP 13839 to 14439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,588 DEBUG Processing 57/106 atomic regions from SNP 16917 to 17519 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:11,736 DEBUG Processing 48/205 atomic regions from SNP 14139 to 14739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:11,795 DEBUG Processing 58/106 atomic regions from SNP 17219 to 17821 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:11,946 DEBUG Processing 49/205 atomic regions from SNP 14439 to 15039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,002 DEBUG Processing 59/106 atomic regions from SNP 17521 to 18123 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:12,155 DEBUG Processing 50/205 atomic regions from SNP 14739 to 15339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,209 DEBUG Processing 60/106 atomic regions from SNP 17823 to 18425 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:12,363 DEBUG Processing 51/205 atomic regions from SNP 15039 to 15639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,415 DEBUG Processing 61/106 atomic regions from SNP 18125 to 18727 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:12,572 DEBUG Processing 52/205 atomic regions from SNP 15339 to 15939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,626 DEBUG Processing 62/106 atomic regions from SNP 18427 to 19029 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:12,779 DEBUG Processing 53/205 atomic regions from SNP 15639 to 16239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:12,837 DEBUG Processing 63/106 atomic regions from SNP 18729 to 19331 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:12,988 DEBUG Processing 54/205 atomic regions from SNP 15939 to 16539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,044 DEBUG Processing 64/106 atomic regions from SNP 19031 to 19633 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:13,197 DEBUG Processing 55/205 atomic regions from SNP 16239 to 16839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,253 DEBUG Processing 65/106 atomic regions from SNP 19333 to 19935 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:13,406 DEBUG Processing 56/205 atomic regions from SNP 16539 to 17139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,470 DEBUG Processing 66/106 atomic regions from SNP 19635 to 20237 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:13,614 DEBUG Processing 57/205 atomic regions from SNP 16839 to 17439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,680 DEBUG Processing 67/106 atomic regions from SNP 19937 to 20539 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:13,822 DEBUG Processing 58/205 atomic regions from SNP 17139 to 17739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:13,888 DEBUG Processing 68/106 atomic regions from SNP 20239 to 20841 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:14,044 DEBUG Processing 59/205 atomic regions from SNP 17439 to 18039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,097 DEBUG Processing 69/106 atomic regions from SNP 20541 to 21143 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:14,271 DEBUG Processing 60/205 atomic regions from SNP 17739 to 18339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,307 DEBUG Processing 70/106 atomic regions from SNP 20843 to 21445 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:14,479 DEBUG Processing 61/205 atomic regions from SNP 18039 to 18639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,520 DEBUG Processing 71/106 atomic regions from SNP 21145 to 21747 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:14,687 DEBUG Processing 62/205 atomic regions from SNP 18339 to 18939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,728 DEBUG Processing 72/106 atomic regions from SNP 21447 to 22049 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:14,894 DEBUG Processing 63/205 atomic regions from SNP 18639 to 19239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:14,937 DEBUG Processing 73/106 atomic regions from SNP 21749 to 22351 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:15,103 DEBUG Processing 64/205 atomic regions from SNP 18939 to 19539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,143 DEBUG Processing 74/106 atomic regions from SNP 22051 to 22653 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:15,311 DEBUG Processing 65/205 atomic regions from SNP 19239 to 19839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,351 DEBUG Processing 75/106 atomic regions from SNP 22353 to 22955 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:15,517 DEBUG Processing 66/205 atomic regions from SNP 19539 to 20139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,561 DEBUG Processing 76/106 atomic regions from SNP 22655 to 23257 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:15,725 DEBUG Processing 67/205 atomic regions from SNP 19839 to 20439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,770 DEBUG Processing 77/106 atomic regions from SNP 22957 to 23559 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:15,934 DEBUG Processing 68/205 atomic regions from SNP 20139 to 20739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:15,979 DEBUG Processing 78/106 atomic regions from SNP 23259 to 23861 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:16,142 DEBUG Processing 69/205 atomic regions from SNP 20439 to 21039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,190 DEBUG Processing 79/106 atomic regions from SNP 23561 to 24163 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:16,354 DEBUG Processing 70/205 atomic regions from SNP 20739 to 21339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,400 DEBUG Processing 80/106 atomic regions from SNP 23863 to 24465 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:16,563 DEBUG Processing 71/205 atomic regions from SNP 21039 to 21639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,611 DEBUG Processing 81/106 atomic regions from SNP 24165 to 24767 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:16,770 DEBUG Processing 72/205 atomic regions from SNP 21339 to 21939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:16,818 DEBUG Processing 82/106 atomic regions from SNP 24467 to 25069 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:16,981 DEBUG Processing 73/205 atomic regions from SNP 21639 to 22239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,025 DEBUG Processing 83/106 atomic regions from SNP 24769 to 25371 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:17,189 DEBUG Processing 74/205 atomic regions from SNP 21939 to 22539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,247 DEBUG Processing 84/106 atomic regions from SNP 25071 to 25673 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:17,403 DEBUG Processing 75/205 atomic regions from SNP 22239 to 22839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,484 DEBUG Processing 85/106 atomic regions from SNP 25373 to 25975 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:17,614 DEBUG Processing 76/205 atomic regions from SNP 22539 to 23139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,715 DEBUG Processing 86/106 atomic regions from SNP 25675 to 26277 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:17,825 DEBUG Processing 77/205 atomic regions from SNP 22839 to 23439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:17,938 DEBUG Processing 87/106 atomic regions from SNP 25977 to 26579 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:18,035 DEBUG Processing 78/205 atomic regions from SNP 23139 to 23739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,148 DEBUG Processing 88/106 atomic regions from SNP 26279 to 26881 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:18,243 DEBUG Processing 79/205 atomic regions from SNP 23439 to 24039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,373 DEBUG Processing 89/106 atomic regions from SNP 26581 to 27183 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:18,454 DEBUG Processing 80/205 atomic regions from SNP 23739 to 24339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,590 DEBUG Processing 90/106 atomic regions from SNP 26883 to 27485 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:18,663 DEBUG Processing 81/205 atomic regions from SNP 24039 to 24639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:18,801 DEBUG Processing 91/106 atomic regions from SNP 27185 to 27787 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:18,876 DEBUG Processing 82/205 atomic regions from SNP 24339 to 24939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,013 DEBUG Processing 92/106 atomic regions from SNP 27487 to 28089 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:19,090 DEBUG Processing 83/205 atomic regions from SNP 24639 to 25239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,227 DEBUG Processing 93/106 atomic regions from SNP 27789 to 28391 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:19,301 DEBUG Processing 84/205 atomic regions from SNP 24939 to 25539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,444 DEBUG Processing 94/106 atomic regions from SNP 28091 to 28693 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:19,513 DEBUG Processing 85/205 atomic regions from SNP 25239 to 25839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,663 DEBUG Processing 95/106 atomic regions from SNP 28393 to 28995 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:19,724 DEBUG Processing 86/205 atomic regions from SNP 25539 to 26139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:19,878 DEBUG Processing 96/106 atomic regions from SNP 28695 to 29297 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:19,934 DEBUG Processing 87/205 atomic regions from SNP 25839 to 26439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,090 DEBUG Processing 97/106 atomic regions from SNP 28997 to 29599 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:20,145 DEBUG Processing 88/205 atomic regions from SNP 26139 to 26739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,302 DEBUG Processing 98/106 atomic regions from SNP 29299 to 29901 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:20,356 DEBUG Processing 89/205 atomic regions from SNP 26439 to 27039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,514 DEBUG Processing 99/106 atomic regions from SNP 29601 to 30203 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:20,566 DEBUG Processing 90/205 atomic regions from SNP 26739 to 27339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,725 DEBUG Processing 100/106 atomic regions from SNP 29903 to 30505 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:20,776 DEBUG Processing 91/205 atomic regions from SNP 27039 to 27639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:20,938 DEBUG Processing 101/106 atomic regions from SNP 30205 to 30807 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:20,990 DEBUG Processing 92/205 atomic regions from SNP 27339 to 27939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,153 DEBUG Processing 102/106 atomic regions from SNP 30507 to 31109 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:21,201 DEBUG Processing 93/205 atomic regions from SNP 27639 to 28239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,366 DEBUG Processing 103/106 atomic regions from SNP 30809 to 31411 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:21,412 DEBUG Processing 94/205 atomic regions from SNP 27939 to 28539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,578 DEBUG Processing 104/106 atomic regions from SNP 31111 to 31713 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:21,625 DEBUG Processing 95/205 atomic regions from SNP 28239 to 28839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,788 DEBUG Processing 105/106 atomic regions from SNP 31413 to 32015 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:21,836 DEBUG Processing 96/205 atomic regions from SNP 28539 to 29139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:21,997 DEBUG Processing 106/106 atomic regions from SNP 31715 to 32317 for chrX (subchromosome 1 of 6). 2025-01-31 09:41:22,052 DEBUG Processing 97/205 atomic regions from SNP 28839 to 29439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,106 DEBUG Unique SNPs positions in subchromosome 1: 32318 2025-01-31 09:41:22,142 DEBUG Subchromosome time: 26.91848473623395, subchromosome SNPs: 32318 2025-01-31 09:41:22,150 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:22,264 DEBUG Processing 98/205 atomic regions from SNP 29139 to 29739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,472 DEBUG Processing 99/205 atomic regions from SNP 29439 to 30039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,679 DEBUG Processing 100/205 atomic regions from SNP 29739 to 30339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:22,711 DEBUG Segmenting atomic regions: 2025-01-31 09:41:22,822 DEBUG Processing 1/852 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:22,899 DEBUG Processing 101/205 atomic regions from SNP 30039 to 30639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,111 DEBUG Processing 102/205 atomic regions from SNP 30339 to 30939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,164 DEBUG Segmenting atomic regions: 2025-01-31 09:41:23,273 DEBUG Processing 1/830 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,325 DEBUG Processing 103/205 atomic regions from SNP 30639 to 31239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,536 DEBUG Processing 104/205 atomic regions from SNP 30939 to 31539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,598 DEBUG Processing 2/852 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,749 DEBUG Processing 105/205 atomic regions from SNP 31239 to 31839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:23,808 DEBUG Processing 3/852 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:23,949 DEBUG Processing 2/830 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:23,963 DEBUG Processing 106/205 atomic regions from SNP 31539 to 32139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:24,019 DEBUG Processing 4/852 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,161 DEBUG Processing 3/830 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,178 DEBUG Processing 107/205 atomic regions from SNP 31839 to 32439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:24,230 DEBUG Processing 5/852 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,374 DEBUG Processing 4/830 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,392 DEBUG Processing 108/205 atomic regions from SNP 32139 to 32739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:24,445 DEBUG Processing 6/852 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,594 DEBUG Processing 5/830 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,609 DEBUG Processing 109/205 atomic regions from SNP 32439 to 33039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:24,658 DEBUG Processing 7/852 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:24,804 DEBUG Processing 6/830 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:24,822 DEBUG Processing 110/205 atomic regions from SNP 32739 to 33339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:24,870 DEBUG Processing 8/852 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,015 DEBUG Processing 7/830 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,036 DEBUG Processing 111/205 atomic regions from SNP 33039 to 33639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:25,079 DEBUG Processing 9/852 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,231 DEBUG Processing 8/830 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,250 DEBUG Processing 112/205 atomic regions from SNP 33339 to 33939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:25,293 DEBUG Processing 10/852 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,442 DEBUG Processing 9/830 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,465 DEBUG Processing 113/205 atomic regions from SNP 33639 to 34239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:25,506 DEBUG Processing 11/852 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,651 DEBUG Processing 10/830 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,679 DEBUG Processing 114/205 atomic regions from SNP 33939 to 34539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:25,718 DEBUG Processing 12/852 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:25,775 DEBUG Segmenting atomic regions: 2025-01-31 09:41:25,863 DEBUG Processing 11/830 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:25,877 DEBUG Processing 1/100 atomic regions from SNP 0 to 602 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:25,892 DEBUG Processing 115/205 atomic regions from SNP 34239 to 34839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:25,931 DEBUG Processing 13/852 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,080 DEBUG Processing 12/830 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,089 DEBUG Processing 2/100 atomic regions from SNP 302 to 904 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:26,105 DEBUG Processing 116/205 atomic regions from SNP 34539 to 35139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:26,146 DEBUG Processing 14/852 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,293 DEBUG Processing 13/830 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,300 DEBUG Processing 3/100 atomic regions from SNP 604 to 1206 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:26,319 DEBUG Processing 117/205 atomic regions from SNP 34839 to 35439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:26,360 DEBUG Processing 15/852 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,507 DEBUG Processing 14/830 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,514 DEBUG Processing 4/100 atomic regions from SNP 906 to 1508 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:26,535 DEBUG Processing 118/205 atomic regions from SNP 35139 to 35739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:26,574 DEBUG Processing 16/852 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,716 DEBUG Processing 15/830 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,723 DEBUG Processing 5/100 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:26,752 DEBUG Processing 119/205 atomic regions from SNP 35439 to 36039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:26,790 DEBUG Processing 17/852 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:26,929 DEBUG Processing 16/830 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:26,933 DEBUG Processing 6/100 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:26,969 DEBUG Processing 120/205 atomic regions from SNP 35739 to 36339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:27,007 DEBUG Processing 18/852 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,140 DEBUG Processing 17/830 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,144 DEBUG Processing 7/100 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:27,181 DEBUG Processing 121/205 atomic regions from SNP 36039 to 36639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:27,217 DEBUG Processing 19/852 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,357 DEBUG Processing 8/100 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:27,358 DEBUG Processing 18/830 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,392 DEBUG Processing 122/205 atomic regions from SNP 36339 to 36939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:27,430 DEBUG Processing 20/852 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,570 DEBUG Processing 19/830 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,581 DEBUG Processing 9/100 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:27,609 DEBUG Processing 123/205 atomic regions from SNP 36639 to 37239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:27,643 DEBUG Processing 21/852 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:27,786 DEBUG Processing 20/830 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:27,813 DEBUG Processing 10/100 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:27,823 DEBUG Processing 124/205 atomic regions from SNP 36939 to 37539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:27,860 DEBUG Processing 22/852 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,001 DEBUG Processing 21/830 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,040 DEBUG Processing 11/100 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:28,042 DEBUG Processing 125/205 atomic regions from SNP 37239 to 37839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:28,076 DEBUG Processing 23/852 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,215 DEBUG Processing 22/830 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,256 DEBUG Processing 126/205 atomic regions from SNP 37539 to 38139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:28,262 DEBUG Processing 12/100 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:28,292 DEBUG Processing 24/852 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,432 DEBUG Processing 23/830 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,471 DEBUG Processing 127/205 atomic regions from SNP 37839 to 38439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:28,479 DEBUG Processing 13/100 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:28,504 DEBUG Processing 25/852 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,654 DEBUG Processing 24/830 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,684 DEBUG Processing 128/205 atomic regions from SNP 38139 to 38739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:28,695 DEBUG Processing 14/100 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:28,716 DEBUG Processing 26/852 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:28,868 DEBUG Processing 25/830 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:28,897 DEBUG Processing 129/205 atomic regions from SNP 38439 to 39039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:28,908 DEBUG Processing 15/100 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:28,928 DEBUG Processing 27/852 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,086 DEBUG Processing 26/830 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,112 DEBUG Processing 130/205 atomic regions from SNP 38739 to 39339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:29,130 DEBUG Processing 16/100 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:29,142 DEBUG Processing 28/852 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,311 DEBUG Processing 27/830 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,337 DEBUG Processing 131/205 atomic regions from SNP 39039 to 39639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:29,369 DEBUG Processing 29/852 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,376 DEBUG Processing 17/100 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:29,538 DEBUG Processing 28/830 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,567 DEBUG Processing 132/205 atomic regions from SNP 39339 to 39939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:29,600 DEBUG Processing 30/852 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,617 DEBUG Processing 18/100 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:29,763 DEBUG Processing 29/830 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:29,809 DEBUG Processing 133/205 atomic regions from SNP 39639 to 40239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:29,844 DEBUG Processing 19/100 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:29,871 DEBUG Processing 31/852 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:29,989 DEBUG Processing 30/830 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,040 DEBUG Processing 134/205 atomic regions from SNP 39939 to 40539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:30,074 DEBUG Processing 20/100 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:30,102 DEBUG Processing 32/852 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,210 DEBUG Processing 31/830 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,261 DEBUG Processing 135/205 atomic regions from SNP 40239 to 40839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:30,296 DEBUG Processing 21/100 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:30,325 DEBUG Processing 33/852 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,434 DEBUG Processing 32/830 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,485 DEBUG Processing 136/205 atomic regions from SNP 40539 to 41139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:30,515 DEBUG Processing 22/100 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:30,548 DEBUG Processing 34/852 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,654 DEBUG Processing 33/830 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,702 DEBUG Processing 137/205 atomic regions from SNP 40839 to 41439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:30,732 DEBUG Processing 23/100 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:30,764 DEBUG Processing 35/852 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:30,875 DEBUG Processing 34/830 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:30,921 DEBUG Processing 138/205 atomic regions from SNP 41139 to 41739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:30,946 DEBUG Processing 24/100 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:30,980 DEBUG Processing 36/852 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,095 DEBUG Processing 35/830 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,138 DEBUG Processing 139/205 atomic regions from SNP 41439 to 42039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:31,163 DEBUG Processing 25/100 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:31,192 DEBUG Processing 37/852 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,312 DEBUG Processing 36/830 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,354 DEBUG Processing 140/205 atomic regions from SNP 41739 to 42339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:31,377 DEBUG Processing 26/100 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:31,416 DEBUG Processing 38/852 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,527 DEBUG Processing 37/830 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,568 DEBUG Processing 141/205 atomic regions from SNP 42039 to 42639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:31,593 DEBUG Processing 27/100 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:31,632 DEBUG Processing 39/852 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,743 DEBUG Processing 38/830 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,781 DEBUG Processing 142/205 atomic regions from SNP 42339 to 42939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:31,810 DEBUG Processing 28/100 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:31,848 DEBUG Processing 40/852 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:31,958 DEBUG Processing 39/830 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:31,999 DEBUG Processing 143/205 atomic regions from SNP 42639 to 43239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:32,029 DEBUG Processing 29/100 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:32,068 DEBUG Processing 41/852 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,178 DEBUG Processing 40/830 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,214 DEBUG Processing 144/205 atomic regions from SNP 42939 to 43539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:32,246 DEBUG Processing 30/100 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:32,285 DEBUG Processing 42/852 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,396 DEBUG Processing 41/830 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,430 DEBUG Processing 145/205 atomic regions from SNP 43239 to 43839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:32,462 DEBUG Processing 31/100 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:32,500 DEBUG Processing 43/852 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,614 DEBUG Processing 42/830 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,646 DEBUG Processing 146/205 atomic regions from SNP 43539 to 44139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:32,680 DEBUG Processing 32/100 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:32,683 DEBUG Segmenting atomic regions: 2025-01-31 09:41:32,713 DEBUG Processing 44/852 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:32,816 DEBUG Processing 1/993 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:32,832 DEBUG Processing 43/830 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:32,862 DEBUG Processing 147/205 atomic regions from SNP 43839 to 44439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:32,896 DEBUG Processing 33/100 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:32,932 DEBUG Processing 45/852 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,061 DEBUG Processing 44/830 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,088 DEBUG Processing 148/205 atomic regions from SNP 44139 to 44739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:33,128 DEBUG Processing 34/100 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:33,160 DEBUG Processing 46/852 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,294 DEBUG Processing 45/830 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,317 DEBUG Processing 149/205 atomic regions from SNP 44439 to 45039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:33,427 DEBUG Processing 35/100 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:33,445 DEBUG Processing 47/852 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,534 DEBUG Processing 46/830 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,554 DEBUG Processing 150/205 atomic regions from SNP 44739 to 45339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:33,681 DEBUG Processing 36/100 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:33,702 DEBUG Processing 48/852 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:33,772 DEBUG Processing 47/830 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:33,779 DEBUG Processing 2/993 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:33,816 DEBUG Processing 151/205 atomic regions from SNP 45039 to 45639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:33,900 DEBUG Processing 37/100 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:33,930 DEBUG Processing 49/852 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,006 DEBUG Processing 48/830 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,031 DEBUG Processing 3/993 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,041 DEBUG Processing 152/205 atomic regions from SNP 45339 to 45939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:34,169 DEBUG Processing 38/100 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:34,215 DEBUG Processing 50/852 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,258 DEBUG Processing 49/830 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,280 DEBUG Processing 153/205 atomic regions from SNP 45639 to 46239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:34,295 DEBUG Processing 4/993 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,392 DEBUG Processing 39/100 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:34,446 DEBUG Processing 51/852 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,552 DEBUG Processing 50/830 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,608 DEBUG Processing 154/205 atomic regions from SNP 45939 to 46539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:34,636 DEBUG Processing 5/993 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,642 DEBUG Processing 40/100 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:34,679 DEBUG Processing 52/852 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,767 DEBUG Processing 51/830 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:34,828 DEBUG Processing 155/205 atomic regions from SNP 46239 to 46839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:34,876 DEBUG Processing 41/100 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:34,890 DEBUG Processing 6/993 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:34,911 DEBUG Processing 53/852 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:34,985 DEBUG Processing 52/830 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,126 DEBUG Processing 156/205 atomic regions from SNP 46539 to 47139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:35,205 DEBUG Processing 42/100 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:35,240 DEBUG Processing 7/993 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,262 DEBUG Processing 54/852 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,313 DEBUG Processing 53/830 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,393 DEBUG Processing 157/205 atomic regions from SNP 46839 to 47439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:35,424 DEBUG Processing 43/100 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:35,558 DEBUG Processing 8/993 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,572 DEBUG Processing 55/852 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,659 DEBUG Processing 54/830 atomic regions from SNP 15953 to 16553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,703 DEBUG Processing 158/205 atomic regions from SNP 47139 to 47739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:35,704 DEBUG Processing 44/100 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:35,792 DEBUG Processing 56/852 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:35,802 DEBUG Processing 9/993 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:35,892 DEBUG Processing 55/830 atomic regions from SNP 16253 to 16853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:35,939 DEBUG Processing 45/100 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:35,949 DEBUG Processing 159/205 atomic regions from SNP 47439 to 48039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:36,011 DEBUG Processing 57/852 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,043 DEBUG Processing 10/993 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,110 DEBUG Processing 56/830 atomic regions from SNP 16553 to 17153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,164 DEBUG Processing 46/100 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:36,180 DEBUG Processing 160/205 atomic regions from SNP 47739 to 48339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:36,234 DEBUG Processing 58/852 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,285 DEBUG Processing 11/993 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,327 DEBUG Processing 57/830 atomic regions from SNP 16853 to 17453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,437 DEBUG Processing 47/100 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:36,473 DEBUG Processing 161/205 atomic regions from SNP 48039 to 48639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:36,541 DEBUG Processing 59/852 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,615 DEBUG Processing 12/993 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,620 DEBUG Processing 58/830 atomic regions from SNP 17153 to 17753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,673 DEBUG Processing 48/100 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:36,704 DEBUG Processing 162/205 atomic regions from SNP 48339 to 48939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:36,772 DEBUG Processing 60/852 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:36,842 DEBUG Processing 59/830 atomic regions from SNP 17453 to 18053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:36,865 DEBUG Processing 13/993 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:36,896 DEBUG Processing 49/100 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:36,924 DEBUG Processing 163/205 atomic regions from SNP 48639 to 49239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:37,017 DEBUG Processing 61/852 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,133 DEBUG Processing 60/830 atomic regions from SNP 17753 to 18353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,197 DEBUG Processing 14/993 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,201 DEBUG Processing 50/100 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:37,255 DEBUG Processing 164/205 atomic regions from SNP 48939 to 49539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:37,362 DEBUG Processing 62/852 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,425 DEBUG Processing 61/830 atomic regions from SNP 18053 to 18653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,513 DEBUG Processing 51/100 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:37,536 DEBUG Processing 15/993 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:37,558 DEBUG Processing 165/205 atomic regions from SNP 49239 to 49839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:37,682 DEBUG Processing 63/852 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:37,730 DEBUG Processing 62/830 atomic regions from SNP 18353 to 18953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:37,832 DEBUG Processing 52/100 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:37,864 DEBUG Processing 166/205 atomic regions from SNP 49539 to 50139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:37,879 DEBUG Processing 16/993 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,001 DEBUG Processing 64/852 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,058 DEBUG Processing 63/830 atomic regions from SNP 18653 to 19253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,173 DEBUG Processing 53/100 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:38,228 DEBUG Processing 167/205 atomic regions from SNP 49839 to 50439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:38,281 DEBUG Processing 17/993 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,329 DEBUG Processing 65/852 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,399 DEBUG Processing 64/830 atomic regions from SNP 18953 to 19553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,536 DEBUG Processing 54/100 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:38,588 DEBUG Processing 168/205 atomic regions from SNP 50139 to 50739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:38,689 DEBUG Processing 18/993 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:38,699 DEBUG Processing 66/852 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:38,732 DEBUG Processing 65/830 atomic regions from SNP 19253 to 19853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:38,787 DEBUG Processing 55/100 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:38,815 DEBUG Processing 169/205 atomic regions from SNP 50439 to 51039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:38,997 DEBUG Processing 67/852 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,020 DEBUG Processing 19/993 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,063 DEBUG Processing 66/830 atomic regions from SNP 19553 to 20153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,096 DEBUG Processing 56/100 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:39,134 DEBUG Processing 170/205 atomic regions from SNP 50739 to 51339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:39,294 DEBUG Segmenting atomic regions: 2025-01-31 09:41:39,311 DEBUG Processing 68/852 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,341 DEBUG Processing 20/993 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,387 DEBUG Processing 67/830 atomic regions from SNP 19853 to 20453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,406 DEBUG Processing 57/100 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:39,440 DEBUG Processing 1/1109 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:39,482 DEBUG Processing 171/205 atomic regions from SNP 51039 to 51639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:39,572 DEBUG Processing 69/852 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,678 DEBUG Processing 68/830 atomic regions from SNP 20153 to 20753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,711 DEBUG Processing 58/100 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:39,711 DEBUG Processing 21/993 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:39,741 DEBUG Processing 172/205 atomic regions from SNP 51339 to 51939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:39,833 DEBUG Processing 70/852 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:39,968 DEBUG Processing 69/830 atomic regions from SNP 20453 to 21053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:39,982 DEBUG Processing 59/100 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:40,011 DEBUG Processing 173/205 atomic regions from SNP 51639 to 52239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:40,013 DEBUG Processing 22/993 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,099 DEBUG Processing 71/852 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,274 DEBUG Processing 70/830 atomic regions from SNP 20753 to 21353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,286 DEBUG Processing 60/100 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:40,307 DEBUG Processing 174/205 atomic regions from SNP 51939 to 52539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:40,318 DEBUG Processing 2/1109 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,323 DEBUG Processing 23/993 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,346 DEBUG Processing 72/852 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,556 DEBUG Processing 71/830 atomic regions from SNP 21053 to 21653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,569 DEBUG Processing 61/100 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:40,587 DEBUG Processing 175/205 atomic regions from SNP 52239 to 52839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:40,619 DEBUG Processing 24/993 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,625 DEBUG Processing 73/852 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,625 DEBUG Processing 3/1109 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:40,775 DEBUG Processing 72/830 atomic regions from SNP 21353 to 21953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:40,791 DEBUG Processing 62/100 atomic regions from SNP 18422 to 19024 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:40,813 DEBUG Processing 176/205 atomic regions from SNP 52539 to 53139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:40,864 DEBUG Processing 74/852 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:40,872 DEBUG Processing 25/993 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:40,887 DEBUG Processing 4/1109 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,057 DEBUG Processing 73/830 atomic regions from SNP 21653 to 22253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,077 DEBUG Processing 63/100 atomic regions from SNP 18724 to 19326 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:41,097 DEBUG Processing 177/205 atomic regions from SNP 52839 to 53439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:41,132 DEBUG Processing 75/852 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,193 DEBUG Processing 26/993 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,209 DEBUG Processing 5/1109 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,376 DEBUG Processing 74/830 atomic regions from SNP 21953 to 22553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,403 DEBUG Processing 64/100 atomic regions from SNP 19026 to 19628 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:41,416 DEBUG Processing 178/205 atomic regions from SNP 53139 to 53739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:41,451 DEBUG Processing 76/852 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,513 DEBUG Processing 27/993 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,550 DEBUG Processing 6/1109 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,670 DEBUG Processing 75/830 atomic regions from SNP 22253 to 22853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,690 DEBUG Processing 65/100 atomic regions from SNP 19328 to 19930 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:41,706 DEBUG Processing 179/205 atomic regions from SNP 53439 to 54039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:41,762 DEBUG Processing 77/852 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:41,813 DEBUG Processing 28/993 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:41,867 DEBUG Processing 7/1109 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:41,959 DEBUG Processing 76/830 atomic regions from SNP 22553 to 23153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:41,983 DEBUG Processing 66/100 atomic regions from SNP 19630 to 20231 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:42,021 DEBUG Processing 180/205 atomic regions from SNP 53739 to 54339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:42,075 DEBUG Processing 78/852 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,145 DEBUG Processing 29/993 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,210 DEBUG Processing 8/1109 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,289 DEBUG Processing 77/830 atomic regions from SNP 22853 to 23453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,321 DEBUG Processing 67/100 atomic regions from SNP 19931 to 20532 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:42,357 DEBUG Processing 181/205 atomic regions from SNP 54039 to 54639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:42,416 DEBUG Processing 79/852 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,511 DEBUG Processing 30/993 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,583 DEBUG Processing 9/1109 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,621 DEBUG Processing 78/830 atomic regions from SNP 23153 to 23753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:42,648 DEBUG Processing 68/100 atomic regions from SNP 20232 to 20833 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:42,680 DEBUG Processing 182/205 atomic regions from SNP 54339 to 54939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:42,737 DEBUG Processing 80/852 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:42,852 DEBUG Processing 31/993 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:42,964 DEBUG Processing 10/1109 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:42,971 DEBUG Processing 79/830 atomic regions from SNP 23453 to 24053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,008 DEBUG Processing 69/100 atomic regions from SNP 20533 to 21134 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:43,020 DEBUG Processing 183/205 atomic regions from SNP 54639 to 55239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:43,048 DEBUG Processing 81/852 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,126 DEBUG Processing 32/993 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,254 DEBUG Processing 80/830 atomic regions from SNP 23753 to 24353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,285 DEBUG Processing 184/205 atomic regions from SNP 54939 to 55539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:43,287 DEBUG Processing 70/100 atomic regions from SNP 20834 to 21435 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:43,303 DEBUG Processing 11/1109 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,322 DEBUG Processing 82/852 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,377 DEBUG Processing 33/993 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,564 DEBUG Processing 81/830 atomic regions from SNP 24053 to 24653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,600 DEBUG Processing 185/205 atomic regions from SNP 55239 to 55839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:43,614 DEBUG Processing 71/100 atomic regions from SNP 21135 to 21736 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:43,639 DEBUG Processing 83/852 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:43,656 DEBUG Processing 12/1109 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:43,680 DEBUG Processing 34/993 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:43,789 DEBUG Processing 82/830 atomic regions from SNP 24353 to 24953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:43,845 DEBUG Processing 186/205 atomic regions from SNP 55539 to 56139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:43,889 DEBUG Processing 72/100 atomic regions from SNP 21436 to 22037 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:43,935 DEBUG Processing 84/852 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,007 DEBUG Processing 13/1109 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,014 DEBUG Processing 35/993 atomic regions from SNP 10234 to 10834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,071 DEBUG Processing 83/830 atomic regions from SNP 24653 to 25253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,109 DEBUG Processing 187/205 atomic regions from SNP 55839 to 56439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:44,133 DEBUG Processing 73/100 atomic regions from SNP 21737 to 22338 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:44,197 DEBUG Processing 85/852 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,264 DEBUG Processing 36/993 atomic regions from SNP 10534 to 11134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,269 DEBUG Processing 14/1109 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,311 DEBUG Processing 84/830 atomic regions from SNP 24953 to 25553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,335 DEBUG Processing 188/205 atomic regions from SNP 56139 to 56739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:44,356 DEBUG Processing 74/100 atomic regions from SNP 22038 to 22639 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:44,416 DEBUG Processing 86/852 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,508 DEBUG Processing 37/993 atomic regions from SNP 10834 to 11434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,530 DEBUG Processing 15/1109 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,537 DEBUG Processing 85/830 atomic regions from SNP 25253 to 25853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,558 DEBUG Processing 189/205 atomic regions from SNP 56439 to 57039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:44,575 DEBUG Processing 75/100 atomic regions from SNP 22339 to 22940 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:44,631 DEBUG Processing 87/852 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,750 DEBUG Processing 38/993 atomic regions from SNP 11134 to 11734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:44,756 DEBUG Processing 86/830 atomic regions from SNP 25553 to 26153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,781 DEBUG Processing 190/205 atomic regions from SNP 56739 to 57339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:44,788 DEBUG Processing 76/100 atomic regions from SNP 22640 to 23241 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:44,788 DEBUG Processing 16/1109 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:44,847 DEBUG Processing 88/852 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:44,982 DEBUG Processing 87/830 atomic regions from SNP 25853 to 26453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:44,994 DEBUG Processing 39/993 atomic regions from SNP 11434 to 12034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,001 DEBUG Processing 77/100 atomic regions from SNP 22941 to 23542 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:45,001 DEBUG Processing 191/205 atomic regions from SNP 57039 to 57639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:45,041 DEBUG Processing 17/1109 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,065 DEBUG Processing 89/852 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,212 DEBUG Processing 88/830 atomic regions from SNP 26153 to 26753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,217 DEBUG Processing 78/100 atomic regions from SNP 23242 to 23843 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:45,229 DEBUG Processing 192/205 atomic regions from SNP 57339 to 57939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:45,245 DEBUG Processing 40/993 atomic regions from SNP 11734 to 12334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,290 DEBUG Processing 90/852 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,300 DEBUG Processing 18/1109 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,428 DEBUG Processing 89/830 atomic regions from SNP 26453 to 27053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,429 DEBUG Processing 79/100 atomic regions from SNP 23543 to 24144 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:45,451 DEBUG Processing 193/205 atomic regions from SNP 57639 to 58239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:45,489 DEBUG Processing 41/993 atomic regions from SNP 12034 to 12634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,511 DEBUG Processing 91/852 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,554 DEBUG Processing 19/1109 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,643 DEBUG Processing 80/100 atomic regions from SNP 23844 to 24445 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:45,647 DEBUG Processing 90/830 atomic regions from SNP 26753 to 27353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,676 DEBUG Processing 194/205 atomic regions from SNP 57939 to 58539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:45,737 DEBUG Processing 92/852 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,739 DEBUG Processing 42/993 atomic regions from SNP 12334 to 12934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:45,814 DEBUG Processing 20/1109 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:45,865 DEBUG Processing 91/830 atomic regions from SNP 27053 to 27653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:45,888 DEBUG Processing 81/100 atomic regions from SNP 24145 to 24746 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:45,896 DEBUG Processing 195/205 atomic regions from SNP 58239 to 58839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:45,959 DEBUG Processing 93/852 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:45,983 DEBUG Processing 43/993 atomic regions from SNP 12634 to 13234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,079 DEBUG Processing 21/1109 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,109 DEBUG Processing 92/830 atomic regions from SNP 27353 to 27953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,122 DEBUG Processing 196/205 atomic regions from SNP 58539 to 59139 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:46,126 DEBUG Processing 82/100 atomic regions from SNP 24446 to 25047 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:46,187 DEBUG Processing 94/852 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,229 DEBUG Processing 44/993 atomic regions from SNP 12934 to 13534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,329 DEBUG Processing 93/830 atomic regions from SNP 27653 to 28253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,336 DEBUG Processing 22/1109 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,345 DEBUG Processing 83/100 atomic regions from SNP 24747 to 25348 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:46,346 DEBUG Processing 197/205 atomic regions from SNP 58839 to 59439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:46,402 DEBUG Processing 95/852 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,462 DEBUG Processing 45/993 atomic regions from SNP 13234 to 13834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,552 DEBUG Processing 94/830 atomic regions from SNP 27953 to 28553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,568 DEBUG Processing 84/100 atomic regions from SNP 25048 to 25649 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:46,592 DEBUG Processing 198/205 atomic regions from SNP 59139 to 59739 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:46,597 DEBUG Processing 23/1109 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,623 DEBUG Processing 96/852 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,700 DEBUG Processing 46/993 atomic regions from SNP 13534 to 14134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,773 DEBUG Processing 95/830 atomic regions from SNP 28253 to 28853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:46,788 DEBUG Processing 85/100 atomic regions from SNP 25349 to 25950 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:46,814 DEBUG Processing 199/205 atomic regions from SNP 59439 to 60039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:46,844 DEBUG Processing 97/852 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:46,860 DEBUG Processing 24/1109 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:46,936 DEBUG Processing 47/993 atomic regions from SNP 13834 to 14434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:46,990 DEBUG Processing 96/830 atomic regions from SNP 28553 to 29153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,002 DEBUG Processing 86/100 atomic regions from SNP 25650 to 26251 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:47,039 DEBUG Processing 200/205 atomic regions from SNP 59739 to 60339 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:47,062 DEBUG Processing 98/852 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,117 DEBUG Processing 25/1109 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,175 DEBUG Processing 48/993 atomic regions from SNP 14134 to 14734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,205 DEBUG Processing 97/830 atomic regions from SNP 28853 to 29453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,214 DEBUG Processing 87/100 atomic regions from SNP 25951 to 26552 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:47,271 DEBUG Processing 201/205 atomic regions from SNP 60039 to 60639 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:47,275 DEBUG Processing 99/852 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,364 DEBUG Processing 26/1109 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,412 DEBUG Processing 49/993 atomic regions from SNP 14434 to 15034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,416 DEBUG Processing 98/830 atomic regions from SNP 29153 to 29753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,423 DEBUG Processing 88/100 atomic regions from SNP 26252 to 26853 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:47,490 DEBUG Processing 100/852 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,508 DEBUG Processing 202/205 atomic regions from SNP 60339 to 60939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:47,614 DEBUG Processing 27/1109 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,634 DEBUG Processing 99/830 atomic regions from SNP 29453 to 30053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,640 DEBUG Processing 89/100 atomic regions from SNP 26553 to 27154 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:47,653 DEBUG Processing 50/993 atomic regions from SNP 14734 to 15334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,705 DEBUG Processing 101/852 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,738 DEBUG Processing 203/205 atomic regions from SNP 60639 to 61239 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:47,856 DEBUG Processing 100/830 atomic regions from SNP 29753 to 30353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:47,864 DEBUG Processing 90/100 atomic regions from SNP 26854 to 27455 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:47,875 DEBUG Processing 28/1109 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:47,901 DEBUG Processing 51/993 atomic regions from SNP 15034 to 15634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:47,927 DEBUG Processing 102/852 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:47,953 DEBUG Processing 204/205 atomic regions from SNP 60939 to 61539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:48,072 DEBUG Processing 101/830 atomic regions from SNP 30053 to 30653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,080 DEBUG Processing 91/100 atomic regions from SNP 27155 to 27756 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:48,132 DEBUG Processing 29/1109 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,147 DEBUG Processing 52/993 atomic regions from SNP 15334 to 15934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,147 DEBUG Processing 103/852 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,176 DEBUG Processing 205/205 atomic regions from SNP 61239 to 61839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:41:48,284 DEBUG Processing 102/830 atomic regions from SNP 30353 to 30953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,292 DEBUG Processing 92/100 atomic regions from SNP 27456 to 28057 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:48,302 DEBUG Unique SNPs positions in subchromosome 1: 61840 2025-01-31 09:41:48,368 DEBUG Processing 104/852 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,386 DEBUG Processing 30/1109 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,389 DEBUG Processing 53/993 atomic regions from SNP 15634 to 16234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,455 DEBUG Subchromosome time: 54.45541261136532, subchromosome SNPs: 61840 2025-01-31 09:41:48,495 DEBUG Processing 103/830 atomic regions from SNP 30653 to 31253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,499 DEBUG Processing 93/100 atomic regions from SNP 27757 to 28358 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:48,501 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:48,583 DEBUG Processing 105/852 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,625 DEBUG Processing 54/993 atomic regions from SNP 15934 to 16534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,631 DEBUG Processing 31/1109 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,705 DEBUG Processing 94/100 atomic regions from SNP 28058 to 28659 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:48,721 DEBUG Processing 104/830 atomic regions from SNP 30953 to 31553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:48,795 DEBUG Processing 106/852 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:48,858 DEBUG Processing 55/993 atomic regions from SNP 16234 to 16834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:48,876 DEBUG Processing 32/1109 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:48,915 DEBUG Processing 95/100 atomic regions from SNP 28359 to 28960 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:48,935 DEBUG Processing 105/830 atomic regions from SNP 31253 to 31853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,007 DEBUG Processing 107/852 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,094 DEBUG Processing 56/993 atomic regions from SNP 16534 to 17134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,121 DEBUG Processing 33/1109 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,125 DEBUG Processing 96/100 atomic regions from SNP 28660 to 29261 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:49,147 DEBUG Processing 106/830 atomic regions from SNP 31553 to 32153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,219 DEBUG Processing 108/852 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,328 DEBUG Processing 57/993 atomic regions from SNP 16834 to 17434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,335 DEBUG Processing 97/100 atomic regions from SNP 28961 to 29562 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:49,370 DEBUG Processing 34/1109 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,380 DEBUG Processing 107/830 atomic regions from SNP 31853 to 32453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,433 DEBUG Processing 109/852 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,541 DEBUG Processing 98/100 atomic regions from SNP 29262 to 29863 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:49,559 DEBUG Processing 58/993 atomic regions from SNP 17134 to 17734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,623 DEBUG Processing 108/830 atomic regions from SNP 32153 to 32753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,638 DEBUG Processing 35/1109 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,646 DEBUG Processing 110/852 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,747 DEBUG Processing 99/100 atomic regions from SNP 29563 to 30164 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:49,797 DEBUG Processing 59/993 atomic regions from SNP 17434 to 18034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:49,853 DEBUG Processing 109/830 atomic regions from SNP 32453 to 33053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:49,868 DEBUG Processing 111/852 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:49,912 DEBUG Processing 36/1109 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:49,950 DEBUG Processing 100/100 atomic regions from SNP 29864 to 30465 for chrX (subchromosome 4 of 6). 2025-01-31 09:41:50,034 DEBUG Processing 60/993 atomic regions from SNP 17734 to 18334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,059 DEBUG Unique SNPs positions in subchromosome 4: 30466 2025-01-31 09:41:50,084 DEBUG Processing 112/852 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,087 DEBUG Processing 110/830 atomic regions from SNP 32753 to 33353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,092 DEBUG Subchromosome time: 27.942396111786366, subchromosome SNPs: 30466 2025-01-31 09:41:50,117 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:50,171 DEBUG Processing 37/1109 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,274 DEBUG Processing 61/993 atomic regions from SNP 18034 to 18634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,301 DEBUG Processing 113/852 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,323 DEBUG Processing 111/830 atomic regions from SNP 33053 to 33653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,421 DEBUG Processing 38/1109 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,513 DEBUG Processing 62/993 atomic regions from SNP 18334 to 18934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,517 DEBUG Processing 114/852 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,545 DEBUG Processing 112/830 atomic regions from SNP 33353 to 33953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,671 DEBUG Processing 39/1109 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,735 DEBUG Processing 115/852 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,752 DEBUG Processing 63/993 atomic regions from SNP 18634 to 19234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:50,754 DEBUG Processing 113/830 atomic regions from SNP 33653 to 34253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,918 DEBUG Processing 40/1109 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:50,959 DEBUG Processing 116/852 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:50,975 DEBUG Processing 114/830 atomic regions from SNP 33953 to 34553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:50,995 DEBUG Processing 64/993 atomic regions from SNP 18934 to 19534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,170 DEBUG Processing 41/1109 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,180 DEBUG Processing 117/852 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,209 DEBUG Processing 115/830 atomic regions from SNP 34253 to 34853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,235 DEBUG Processing 65/993 atomic regions from SNP 19234 to 19834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,406 DEBUG Processing 118/852 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,430 DEBUG Processing 42/1109 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,443 DEBUG Processing 116/830 atomic regions from SNP 34553 to 35153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,488 DEBUG Processing 66/993 atomic regions from SNP 19534 to 20134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,641 DEBUG Processing 119/852 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,670 DEBUG Processing 117/830 atomic regions from SNP 34853 to 35453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,695 DEBUG Processing 43/1109 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,738 DEBUG Processing 67/993 atomic regions from SNP 19834 to 20434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:51,871 DEBUG Processing 120/852 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:51,891 DEBUG Processing 118/830 atomic regions from SNP 35153 to 35753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:51,954 DEBUG Processing 44/1109 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:51,982 DEBUG Processing 68/993 atomic regions from SNP 20134 to 20734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,096 DEBUG Processing 121/852 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,112 DEBUG Processing 119/830 atomic regions from SNP 35453 to 36053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,207 DEBUG Processing 45/1109 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,224 DEBUG Processing 69/993 atomic regions from SNP 20434 to 21034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,319 DEBUG Processing 122/852 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,329 DEBUG Processing 120/830 atomic regions from SNP 35753 to 36353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,461 DEBUG Processing 46/1109 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,469 DEBUG Processing 70/993 atomic regions from SNP 20734 to 21334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,544 DEBUG Processing 123/852 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,548 DEBUG Processing 121/830 atomic regions from SNP 36053 to 36653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,723 DEBUG Processing 47/1109 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:52,724 DEBUG Processing 71/993 atomic regions from SNP 21034 to 21634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:52,775 DEBUG Processing 124/852 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:52,784 DEBUG Processing 122/830 atomic regions from SNP 36353 to 36953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:52,989 DEBUG Processing 72/993 atomic regions from SNP 21334 to 21934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,019 DEBUG Processing 48/1109 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,042 DEBUG Processing 125/852 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,065 DEBUG Processing 123/830 atomic regions from SNP 36653 to 37253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,264 DEBUG Processing 73/993 atomic regions from SNP 21634 to 22234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,286 DEBUG Processing 126/852 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,307 DEBUG Processing 49/1109 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,340 DEBUG Processing 124/830 atomic regions from SNP 36953 to 37553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:53,692 DEBUG Processing 127/852 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:53,706 DEBUG Processing 74/993 atomic regions from SNP 21934 to 22534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:53,747 DEBUG Processing 50/1109 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:53,756 DEBUG Processing 125/830 atomic regions from SNP 37253 to 37853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,022 DEBUG Processing 128/852 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,068 DEBUG Processing 75/993 atomic regions from SNP 22234 to 22834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,116 DEBUG Processing 126/830 atomic regions from SNP 37553 to 38153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,128 DEBUG Processing 51/1109 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,295 DEBUG Processing 129/852 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,431 DEBUG Processing 76/993 atomic regions from SNP 22534 to 23134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,482 DEBUG Processing 127/830 atomic regions from SNP 37853 to 38453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,549 DEBUG Processing 52/1109 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:54,608 DEBUG Processing 130/852 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,794 DEBUG Processing 77/993 atomic regions from SNP 22834 to 23434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:54,856 DEBUG Processing 128/830 atomic regions from SNP 38153 to 38753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:54,959 DEBUG Processing 131/852 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:54,964 DEBUG Processing 53/1109 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,058 DEBUG Processing 78/993 atomic regions from SNP 23134 to 23734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,112 DEBUG Processing 129/830 atomic regions from SNP 38453 to 39053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,264 DEBUG Processing 132/852 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,302 DEBUG Processing 54/1109 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,383 DEBUG Processing 79/993 atomic regions from SNP 23434 to 24034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,388 DEBUG Processing 130/830 atomic regions from SNP 38753 to 39353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,506 DEBUG Processing 133/852 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,571 DEBUG Processing 55/1109 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,608 DEBUG Processing 131/830 atomic regions from SNP 39053 to 39653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,646 DEBUG Processing 80/993 atomic regions from SNP 23734 to 24334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,758 DEBUG Processing 134/852 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:55,838 DEBUG Processing 132/830 atomic regions from SNP 39353 to 39953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:55,853 DEBUG Processing 56/1109 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:55,904 DEBUG Processing 81/993 atomic regions from SNP 24034 to 24634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:55,987 DEBUG Processing 135/852 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,063 DEBUG Processing 133/830 atomic regions from SNP 39653 to 40253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,123 DEBUG Processing 57/1109 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,157 DEBUG Processing 82/993 atomic regions from SNP 24334 to 24934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,211 DEBUG Processing 136/852 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,283 DEBUG Processing 134/830 atomic regions from SNP 39953 to 40553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,389 DEBUG Processing 58/1109 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,410 DEBUG Processing 83/993 atomic regions from SNP 24634 to 25234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,433 DEBUG Processing 137/852 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,503 DEBUG Processing 135/830 atomic regions from SNP 40253 to 40853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:56,748 DEBUG Processing 59/1109 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:56,761 DEBUG Processing 84/993 atomic regions from SNP 24934 to 25534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:56,765 DEBUG Processing 138/852 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:56,793 DEBUG Processing 136/830 atomic regions from SNP 40553 to 41153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,133 DEBUG Processing 139/852 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,136 DEBUG Processing 60/1109 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,137 DEBUG Processing 85/993 atomic regions from SNP 25234 to 25834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,148 DEBUG Processing 137/830 atomic regions from SNP 40853 to 41453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,440 DEBUG Processing 138/830 atomic regions from SNP 41153 to 41753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,442 DEBUG Processing 140/852 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,474 DEBUG Processing 61/1109 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:57,480 DEBUG Processing 86/993 atomic regions from SNP 25534 to 26134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,770 DEBUG Processing 139/830 atomic regions from SNP 41453 to 42053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:57,773 DEBUG Processing 141/852 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:57,838 DEBUG Processing 87/993 atomic regions from SNP 25834 to 26434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:57,851 DEBUG Processing 62/1109 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,044 DEBUG Processing 140/830 atomic regions from SNP 41753 to 42353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,051 DEBUG Processing 142/852 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,183 DEBUG Processing 88/993 atomic regions from SNP 26134 to 26734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,226 DEBUG Processing 63/1109 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,361 DEBUG Processing 141/830 atomic regions from SNP 42053 to 42653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,373 DEBUG Processing 143/852 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,474 DEBUG Processing 89/993 atomic regions from SNP 26434 to 27034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,526 DEBUG Processing 64/1109 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,604 DEBUG Processing 142/830 atomic regions from SNP 42353 to 42953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,633 DEBUG Processing 144/852 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:58,764 DEBUG Processing 90/993 atomic regions from SNP 26734 to 27334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:58,827 DEBUG Processing 65/1109 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:58,916 DEBUG Processing 143/830 atomic regions from SNP 42653 to 43253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:58,959 DEBUG Processing 145/852 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,087 DEBUG Processing 91/993 atomic regions from SNP 27034 to 27634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,122 DEBUG Processing 66/1109 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,165 DEBUG Processing 144/830 atomic regions from SNP 42953 to 43553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,244 DEBUG Processing 146/852 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,445 DEBUG Processing 92/993 atomic regions from SNP 27334 to 27934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,471 DEBUG Processing 67/1109 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,486 DEBUG Processing 145/830 atomic regions from SNP 43253 to 43853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:41:59,534 DEBUG Processing 147/852 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,820 DEBUG Processing 93/993 atomic regions from SNP 27634 to 28234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:41:59,849 DEBUG Processing 68/1109 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:41:59,876 DEBUG Processing 148/852 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:41:59,880 DEBUG Processing 146/830 atomic regions from SNP 43553 to 44153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,179 DEBUG Processing 94/993 atomic regions from SNP 27934 to 28534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,214 DEBUG Processing 149/852 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,220 DEBUG Processing 69/1109 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,257 DEBUG Processing 147/830 atomic regions from SNP 43853 to 44453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,483 DEBUG Processing 95/993 atomic regions from SNP 28234 to 28834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,548 DEBUG Processing 150/852 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,580 DEBUG Processing 70/1109 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,584 DEBUG Processing 148/830 atomic regions from SNP 44153 to 44753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,733 DEBUG Processing 96/993 atomic regions from SNP 28534 to 29134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:00,782 DEBUG Processing 151/852 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:00,811 DEBUG Processing 149/830 atomic regions from SNP 44453 to 45053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:00,845 DEBUG Processing 71/1109 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:00,980 DEBUG Processing 97/993 atomic regions from SNP 28834 to 29434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,019 DEBUG Processing 152/852 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,078 DEBUG Processing 150/830 atomic regions from SNP 44753 to 45353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,164 DEBUG Processing 72/1109 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,257 DEBUG Processing 98/993 atomic regions from SNP 29134 to 29734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,265 DEBUG Processing 153/852 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,305 DEBUG Processing 151/830 atomic regions from SNP 45053 to 45653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,482 DEBUG Processing 73/1109 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,517 DEBUG Processing 154/852 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,536 DEBUG Processing 99/993 atomic regions from SNP 29434 to 30034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:01,540 DEBUG Processing 152/830 atomic regions from SNP 45353 to 45953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,760 DEBUG Processing 74/1109 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:01,808 DEBUG Processing 155/852 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:01,838 DEBUG Processing 153/830 atomic regions from SNP 45653 to 46253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:01,839 DEBUG Processing 100/993 atomic regions from SNP 29734 to 30334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,077 DEBUG Processing 75/1109 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,111 DEBUG Processing 156/852 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,138 DEBUG Processing 154/830 atomic regions from SNP 45953 to 46553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,158 DEBUG Processing 101/993 atomic regions from SNP 30034 to 30634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,334 DEBUG Processing 157/852 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,340 DEBUG Processing 76/1109 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,369 DEBUG Processing 155/830 atomic regions from SNP 46253 to 46853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,412 DEBUG Processing 102/993 atomic regions from SNP 30334 to 30934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,578 DEBUG Processing 158/852 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,625 DEBUG Processing 77/1109 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,641 DEBUG Processing 156/830 atomic regions from SNP 46553 to 47153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:02,733 DEBUG Processing 103/993 atomic regions from SNP 30634 to 31234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:02,867 DEBUG Processing 159/852 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:02,950 DEBUG Processing 78/1109 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:02,952 DEBUG Processing 157/830 atomic regions from SNP 46853 to 47453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,042 DEBUG Processing 104/993 atomic regions from SNP 30934 to 31534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,111 DEBUG Segmenting atomic regions: 2025-01-31 09:42:03,122 DEBUG Processing 160/852 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,215 DEBUG Processing 158/830 atomic regions from SNP 47153 to 47753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,217 DEBUG Processing 1/351 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,231 DEBUG Processing 79/1109 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,329 DEBUG Processing 105/993 atomic regions from SNP 31234 to 31834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,410 DEBUG Processing 161/852 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,517 DEBUG Processing 2/351 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,534 DEBUG Processing 159/830 atomic regions from SNP 47453 to 48053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,566 DEBUG Processing 80/1109 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,630 DEBUG Processing 106/993 atomic regions from SNP 31534 to 32134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:03,706 DEBUG Processing 162/852 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:03,833 DEBUG Processing 3/351 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:03,857 DEBUG Processing 160/830 atomic regions from SNP 47753 to 48353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:03,901 DEBUG Processing 81/1109 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:03,952 DEBUG Processing 107/993 atomic regions from SNP 31834 to 32434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,028 DEBUG Processing 163/852 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,123 DEBUG Processing 4/351 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,173 DEBUG Processing 161/830 atomic regions from SNP 48053 to 48653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,237 DEBUG Processing 82/1109 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,286 DEBUG Processing 108/993 atomic regions from SNP 32134 to 32734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,336 DEBUG Processing 164/852 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,435 DEBUG Processing 5/351 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,509 DEBUG Processing 162/830 atomic regions from SNP 48353 to 48953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,596 DEBUG Processing 83/1109 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,620 DEBUG Processing 109/993 atomic regions from SNP 32434 to 33034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,652 DEBUG Processing 165/852 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:04,697 DEBUG Processing 6/351 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:04,777 DEBUG Processing 163/830 atomic regions from SNP 48653 to 49253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:04,945 DEBUG Processing 84/1109 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:04,972 DEBUG Processing 110/993 atomic regions from SNP 32734 to 33334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:04,977 DEBUG Processing 166/852 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,004 DEBUG Processing 7/351 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,036 DEBUG Processing 164/830 atomic regions from SNP 48953 to 49553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,311 DEBUG Processing 8/351 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,311 DEBUG Processing 167/852 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,315 DEBUG Processing 85/1109 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,331 DEBUG Processing 111/993 atomic regions from SNP 33034 to 33634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,343 DEBUG Processing 165/830 atomic regions from SNP 49253 to 49853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,639 DEBUG Processing 9/351 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,647 DEBUG Processing 168/852 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,684 DEBUG Processing 86/1109 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:05,684 DEBUG Processing 166/830 atomic regions from SNP 49553 to 50153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,684 DEBUG Processing 112/993 atomic regions from SNP 33334 to 33934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,865 DEBUG Processing 10/351 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:05,874 DEBUG Processing 169/852 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:05,946 DEBUG Processing 167/830 atomic regions from SNP 49853 to 50453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:05,949 DEBUG Processing 113/993 atomic regions from SNP 33634 to 34234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:05,968 DEBUG Processing 87/1109 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,101 DEBUG Processing 11/351 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,106 DEBUG Processing 170/852 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,196 DEBUG Processing 114/993 atomic regions from SNP 33934 to 34534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,200 DEBUG Processing 168/830 atomic regions from SNP 50153 to 50753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,241 DEBUG Processing 88/1109 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,377 DEBUG Processing 12/351 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,381 DEBUG Processing 171/852 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,514 DEBUG Processing 115/993 atomic regions from SNP 34234 to 34834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,523 DEBUG Processing 169/830 atomic regions from SNP 50453 to 51053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,562 DEBUG Processing 89/1109 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,651 DEBUG Processing 13/351 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,657 DEBUG Processing 172/852 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:06,858 DEBUG Processing 170/830 atomic regions from SNP 50753 to 51353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:06,860 DEBUG Processing 116/993 atomic regions from SNP 34534 to 35134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:06,912 DEBUG Processing 90/1109 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:06,967 DEBUG Processing 14/351 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:06,983 DEBUG Processing 173/852 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,198 DEBUG Processing 117/993 atomic regions from SNP 34834 to 35434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,208 DEBUG Processing 171/830 atomic regions from SNP 51053 to 51653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,296 DEBUG Processing 15/351 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:07,298 DEBUG Processing 91/1109 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,312 DEBUG Processing 174/852 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,526 DEBUG Processing 118/993 atomic regions from SNP 35134 to 35734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,530 DEBUG Processing 172/830 atomic regions from SNP 51353 to 51953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,622 DEBUG Processing 16/351 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:07,627 DEBUG Processing 175/852 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:07,663 DEBUG Processing 92/1109 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:07,845 DEBUG Processing 173/830 atomic regions from SNP 51653 to 52253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:07,860 DEBUG Processing 119/993 atomic regions from SNP 35434 to 36034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:07,978 DEBUG Processing 176/852 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,006 DEBUG Processing 17/351 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,047 DEBUG Processing 93/1109 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,155 DEBUG Processing 174/830 atomic regions from SNP 51953 to 52553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,189 DEBUG Processing 120/993 atomic regions from SNP 35734 to 36334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,308 DEBUG Processing 177/852 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,358 DEBUG Processing 18/351 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,433 DEBUG Processing 94/1109 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,490 DEBUG Processing 175/830 atomic regions from SNP 52253 to 52853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,519 DEBUG Processing 121/993 atomic regions from SNP 36034 to 36634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,614 DEBUG Processing 178/852 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,674 DEBUG Processing 19/351 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:08,788 DEBUG Processing 176/830 atomic regions from SNP 52553 to 53153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:08,788 DEBUG Processing 95/1109 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:08,822 DEBUG Processing 122/993 atomic regions from SNP 36334 to 36934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:08,846 DEBUG Processing 179/852 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:08,935 DEBUG Processing 20/351 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,092 DEBUG Processing 177/830 atomic regions from SNP 52853 to 53453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,122 DEBUG Processing 180/852 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,134 DEBUG Processing 96/1109 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,139 DEBUG Processing 123/993 atomic regions from SNP 36634 to 37234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,170 DEBUG Processing 21/351 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,333 DEBUG Processing 178/830 atomic regions from SNP 53153 to 53753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,353 DEBUG Processing 181/852 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,396 DEBUG Processing 124/993 atomic regions from SNP 36934 to 37534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,407 DEBUG Processing 22/351 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,418 DEBUG Processing 97/1109 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,562 DEBUG Processing 179/830 atomic regions from SNP 53453 to 54053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,585 DEBUG Processing 182/852 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,632 DEBUG Processing 23/351 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,681 DEBUG Processing 125/993 atomic regions from SNP 37234 to 37834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:09,685 DEBUG Processing 98/1109 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,803 DEBUG Processing 180/830 atomic regions from SNP 53753 to 54353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:09,804 DEBUG Processing 183/852 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:09,856 DEBUG Processing 24/351 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:09,941 DEBUG Processing 99/1109 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:09,958 DEBUG Processing 126/993 atomic regions from SNP 37534 to 38134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,023 DEBUG Processing 184/852 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,057 DEBUG Processing 181/830 atomic regions from SNP 54053 to 54653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,077 DEBUG Processing 25/351 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,196 DEBUG Processing 100/1109 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,233 DEBUG Processing 127/993 atomic regions from SNP 37834 to 38434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,241 DEBUG Processing 185/852 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,296 DEBUG Processing 26/351 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,303 DEBUG Processing 182/830 atomic regions from SNP 54353 to 54953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,450 DEBUG Processing 101/1109 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,462 DEBUG Processing 186/852 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,511 DEBUG Processing 128/993 atomic regions from SNP 38134 to 38734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,518 DEBUG Processing 27/351 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,528 DEBUG Processing 183/830 atomic regions from SNP 54653 to 55253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,680 DEBUG Processing 187/852 atomic regions from SNP 55986 to 56586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,710 DEBUG Processing 102/1109 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:10,742 DEBUG Processing 28/351 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,746 DEBUG Processing 184/830 atomic regions from SNP 54953 to 55553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,775 DEBUG Processing 129/993 atomic regions from SNP 38434 to 39034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:10,893 DEBUG Processing 188/852 atomic regions from SNP 56286 to 56886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:10,956 DEBUG Processing 29/351 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:10,966 DEBUG Processing 185/830 atomic regions from SNP 55253 to 55853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:10,968 DEBUG Processing 103/1109 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,018 DEBUG Processing 130/993 atomic regions from SNP 38734 to 39334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,109 DEBUG Processing 189/852 atomic regions from SNP 56586 to 57186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,170 DEBUG Processing 30/351 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,185 DEBUG Processing 186/830 atomic regions from SNP 55553 to 56153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,224 DEBUG Processing 104/1109 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,262 DEBUG Processing 131/993 atomic regions from SNP 39034 to 39634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,324 DEBUG Processing 190/852 atomic regions from SNP 56886 to 57486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,387 DEBUG Processing 31/351 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,406 DEBUG Processing 187/830 atomic regions from SNP 55853 to 56453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,451 DEBUG Segmenting atomic regions: 2025-01-31 09:42:11,484 DEBUG Processing 105/1109 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,537 DEBUG Processing 132/993 atomic regions from SNP 39334 to 39934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,548 DEBUG Processing 191/852 atomic regions from SNP 57186 to 57786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,560 DEBUG Processing 1/629 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,601 DEBUG Processing 32/351 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,623 DEBUG Processing 188/830 atomic regions from SNP 56153 to 56753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,745 DEBUG Processing 106/1109 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:11,767 DEBUG Processing 192/852 atomic regions from SNP 57486 to 58086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:11,805 DEBUG Processing 133/993 atomic regions from SNP 39634 to 40234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:11,807 DEBUG Processing 2/629 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:11,817 DEBUG Processing 33/351 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:11,839 DEBUG Processing 189/830 atomic regions from SNP 56453 to 57053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:11,991 DEBUG Processing 193/852 atomic regions from SNP 57786 to 58386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,014 DEBUG Processing 107/1109 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,041 DEBUG Processing 34/351 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,061 DEBUG Processing 3/629 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,072 DEBUG Processing 190/830 atomic regions from SNP 56753 to 57353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,074 DEBUG Processing 134/993 atomic regions from SNP 39934 to 40534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,208 DEBUG Processing 194/852 atomic regions from SNP 58086 to 58686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,260 DEBUG Processing 35/351 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,279 DEBUG Processing 108/1109 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,281 DEBUG Processing 4/629 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,294 DEBUG Processing 191/830 atomic regions from SNP 57053 to 57653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,337 DEBUG Processing 135/993 atomic regions from SNP 40234 to 40834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,427 DEBUG Processing 195/852 atomic regions from SNP 58386 to 58986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,487 DEBUG Processing 36/351 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,531 DEBUG Processing 5/629 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,535 DEBUG Processing 192/830 atomic regions from SNP 57353 to 57953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,553 DEBUG Processing 109/1109 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,595 DEBUG Processing 136/993 atomic regions from SNP 40534 to 41134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,643 DEBUG Processing 196/852 atomic regions from SNP 58686 to 59286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,705 DEBUG Processing 37/351 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,764 DEBUG Processing 193/830 atomic regions from SNP 57653 to 58253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,774 DEBUG Processing 6/629 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:12,820 DEBUG Processing 110/1109 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:12,855 DEBUG Processing 137/993 atomic regions from SNP 40834 to 41434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:12,861 DEBUG Processing 197/852 atomic regions from SNP 58986 to 59586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:12,925 DEBUG Processing 38/351 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:12,992 DEBUG Processing 194/830 atomic regions from SNP 57953 to 58553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:12,999 DEBUG Processing 7/629 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,080 DEBUG Processing 198/852 atomic regions from SNP 59286 to 59886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,088 DEBUG Processing 111/1109 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,114 DEBUG Processing 138/993 atomic regions from SNP 41134 to 41734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,146 DEBUG Processing 39/351 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,216 DEBUG Processing 195/830 atomic regions from SNP 58253 to 58853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,227 DEBUG Processing 8/629 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,297 DEBUG Processing 199/852 atomic regions from SNP 59586 to 60186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,351 DEBUG Processing 112/1109 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,353 DEBUG Processing 139/993 atomic regions from SNP 41434 to 42034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,360 DEBUG Processing 40/351 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,435 DEBUG Processing 196/830 atomic regions from SNP 58553 to 59153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,471 DEBUG Processing 9/629 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,511 DEBUG Processing 200/852 atomic regions from SNP 59886 to 60486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,578 DEBUG Processing 41/351 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,614 DEBUG Processing 113/1109 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,614 DEBUG Processing 140/993 atomic regions from SNP 41734 to 42334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,654 DEBUG Processing 197/830 atomic regions from SNP 58853 to 59453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,686 DEBUG Processing 10/629 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,723 DEBUG Processing 201/852 atomic regions from SNP 60186 to 60786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,790 DEBUG Processing 42/351 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:13,875 DEBUG Processing 198/830 atomic regions from SNP 59153 to 59753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:13,876 DEBUG Processing 114/1109 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:13,883 DEBUG Processing 141/993 atomic regions from SNP 42034 to 42634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:13,902 DEBUG Processing 11/629 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:13,937 DEBUG Processing 202/852 atomic regions from SNP 60486 to 61086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:13,999 DEBUG Processing 43/351 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,099 DEBUG Processing 199/830 atomic regions from SNP 59453 to 60053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,122 DEBUG Processing 12/629 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,141 DEBUG Processing 115/1109 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,145 DEBUG Processing 142/993 atomic regions from SNP 42334 to 42934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,153 DEBUG Processing 203/852 atomic regions from SNP 60786 to 61386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,209 DEBUG Processing 44/351 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,319 DEBUG Processing 200/830 atomic regions from SNP 59753 to 60353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,339 DEBUG Processing 13/629 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,371 DEBUG Processing 204/852 atomic regions from SNP 61086 to 61686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,393 DEBUG Processing 143/993 atomic regions from SNP 42634 to 43234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,404 DEBUG Processing 116/1109 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,421 DEBUG Processing 45/351 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,541 DEBUG Processing 201/830 atomic regions from SNP 60053 to 60653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,569 DEBUG Processing 14/629 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,591 DEBUG Processing 205/852 atomic regions from SNP 61386 to 61986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,634 DEBUG Processing 46/351 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,650 DEBUG Processing 144/993 atomic regions from SNP 42934 to 43534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,667 DEBUG Processing 117/1109 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,759 DEBUG Processing 202/830 atomic regions from SNP 60353 to 60953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:14,807 DEBUG Processing 206/852 atomic regions from SNP 61686 to 62286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:14,808 DEBUG Processing 15/629 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:14,848 DEBUG Processing 47/351 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:14,891 DEBUG Processing 145/993 atomic regions from SNP 43234 to 43834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:14,923 DEBUG Processing 118/1109 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:14,975 DEBUG Processing 203/830 atomic regions from SNP 60653 to 61253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,023 DEBUG Processing 207/852 atomic regions from SNP 61986 to 62586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,037 DEBUG Processing 16/629 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,065 DEBUG Processing 48/351 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,133 DEBUG Processing 146/993 atomic regions from SNP 43534 to 44134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,181 DEBUG Processing 119/1109 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,191 DEBUG Processing 204/830 atomic regions from SNP 60953 to 61553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,241 DEBUG Processing 208/852 atomic regions from SNP 62286 to 62886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,268 DEBUG Processing 17/629 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,283 DEBUG Processing 49/351 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,384 DEBUG Processing 147/993 atomic regions from SNP 43834 to 44434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,408 DEBUG Processing 205/830 atomic regions from SNP 61253 to 61853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,436 DEBUG Processing 120/1109 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,456 DEBUG Processing 209/852 atomic regions from SNP 62586 to 63186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,483 DEBUG Processing 18/629 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,497 DEBUG Processing 50/351 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,626 DEBUG Processing 206/830 atomic regions from SNP 61553 to 62153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,654 DEBUG Processing 148/993 atomic regions from SNP 44134 to 44734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,674 DEBUG Processing 210/852 atomic regions from SNP 62886 to 63486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,696 DEBUG Processing 121/1109 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:15,710 DEBUG Processing 19/629 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,715 DEBUG Processing 51/351 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,851 DEBUG Processing 207/830 atomic regions from SNP 61853 to 62453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:15,892 DEBUG Processing 211/852 atomic regions from SNP 63186 to 63786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:15,914 DEBUG Processing 149/993 atomic regions from SNP 44434 to 45034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:15,935 DEBUG Processing 52/351 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:15,942 DEBUG Processing 20/629 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:15,962 DEBUG Processing 122/1109 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,074 DEBUG Processing 208/830 atomic regions from SNP 62153 to 62753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,107 DEBUG Processing 212/852 atomic regions from SNP 63486 to 64086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,153 DEBUG Processing 53/351 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,166 DEBUG Processing 150/993 atomic regions from SNP 44734 to 45334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,172 DEBUG Processing 21/629 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,225 DEBUG Processing 123/1109 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,298 DEBUG Processing 209/830 atomic regions from SNP 62453 to 63053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,321 DEBUG Processing 213/852 atomic regions from SNP 63786 to 64386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,371 DEBUG Processing 54/351 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,395 DEBUG Processing 22/629 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,409 DEBUG Processing 151/993 atomic regions from SNP 45034 to 45634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,483 DEBUG Processing 124/1109 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,522 DEBUG Processing 210/830 atomic regions from SNP 62753 to 63353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,539 DEBUG Processing 214/852 atomic regions from SNP 64086 to 64686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,592 DEBUG Processing 55/351 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,626 DEBUG Processing 23/629 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,651 DEBUG Processing 152/993 atomic regions from SNP 45334 to 45934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,744 DEBUG Processing 125/1109 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:16,746 DEBUG Processing 211/830 atomic regions from SNP 63053 to 63653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:16,755 DEBUG Processing 215/852 atomic regions from SNP 64386 to 64986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,813 DEBUG Processing 56/351 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:16,865 DEBUG Processing 24/629 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:16,890 DEBUG Processing 153/993 atomic regions from SNP 45634 to 46234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:16,972 DEBUG Processing 216/852 atomic regions from SNP 64686 to 65286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:16,974 DEBUG Processing 212/830 atomic regions from SNP 63353 to 63953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,009 DEBUG Processing 126/1109 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,034 DEBUG Processing 57/351 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,087 DEBUG Processing 25/629 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,142 DEBUG Processing 154/993 atomic regions from SNP 45934 to 46534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,189 DEBUG Processing 217/852 atomic regions from SNP 64986 to 65586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,198 DEBUG Processing 213/830 atomic regions from SNP 63653 to 64253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,259 DEBUG Processing 58/351 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,280 DEBUG Processing 127/1109 atomic regions from SNP 37926 to 38526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,312 DEBUG Processing 26/629 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,401 DEBUG Processing 155/993 atomic regions from SNP 46234 to 46834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,405 DEBUG Processing 218/852 atomic regions from SNP 65286 to 65886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,416 DEBUG Processing 214/830 atomic regions from SNP 63953 to 64553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,488 DEBUG Processing 59/351 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,536 DEBUG Processing 27/629 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,554 DEBUG Processing 128/1109 atomic regions from SNP 38226 to 38826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,622 DEBUG Processing 219/852 atomic regions from SNP 65586 to 66186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,645 DEBUG Processing 215/830 atomic regions from SNP 64253 to 64853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:17,661 DEBUG Processing 156/993 atomic regions from SNP 46534 to 47134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:17,723 DEBUG Processing 60/351 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:17,760 DEBUG Processing 28/629 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:17,872 DEBUG Processing 129/1109 atomic regions from SNP 38526 to 39126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:17,901 DEBUG Processing 220/852 atomic regions from SNP 65886 to 66486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:17,937 DEBUG Processing 216/830 atomic regions from SNP 64553 to 65153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,013 DEBUG Processing 157/993 atomic regions from SNP 46834 to 47434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,039 DEBUG Processing 61/351 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,068 DEBUG Processing 29/629 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,219 DEBUG Processing 130/1109 atomic regions from SNP 38826 to 39426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,223 DEBUG Processing 221/852 atomic regions from SNP 66186 to 66786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,256 DEBUG Processing 217/830 atomic regions from SNP 64853 to 65453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,394 DEBUG Processing 62/351 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,419 DEBUG Processing 158/993 atomic regions from SNP 47134 to 47734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,423 DEBUG Processing 30/629 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,594 DEBUG Processing 222/852 atomic regions from SNP 66486 to 67086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,613 DEBUG Processing 218/830 atomic regions from SNP 65153 to 65753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:18,626 DEBUG Processing 131/1109 atomic regions from SNP 39126 to 39726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:18,735 DEBUG Processing 63/351 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:18,768 DEBUG Processing 31/629 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:18,817 DEBUG Processing 159/993 atomic regions from SNP 47434 to 48034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:18,935 DEBUG Processing 223/852 atomic regions from SNP 66786 to 67386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:18,954 DEBUG Processing 219/830 atomic regions from SNP 65453 to 66053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,013 DEBUG Processing 132/1109 atomic regions from SNP 39426 to 40026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,083 DEBUG Processing 64/351 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,109 DEBUG Processing 32/629 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,200 DEBUG Processing 160/993 atomic regions from SNP 47734 to 48334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,279 DEBUG Processing 224/852 atomic regions from SNP 67086 to 67686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,301 DEBUG Processing 220/830 atomic regions from SNP 65753 to 66353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,394 DEBUG Processing 133/1109 atomic regions from SNP 39726 to 40326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,429 DEBUG Processing 65/351 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,472 DEBUG Processing 33/629 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,571 DEBUG Processing 161/993 atomic regions from SNP 48034 to 48634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,623 DEBUG Processing 225/852 atomic regions from SNP 67386 to 67986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:19,644 DEBUG Processing 221/830 atomic regions from SNP 66053 to 66653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,780 DEBUG Processing 66/351 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:19,781 DEBUG Processing 134/1109 atomic regions from SNP 40026 to 40626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:19,831 DEBUG Processing 34/629 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:19,968 DEBUG Processing 222/830 atomic regions from SNP 66353 to 66953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:19,970 DEBUG Processing 162/993 atomic regions from SNP 48334 to 48934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:19,970 DEBUG Processing 226/852 atomic regions from SNP 67686 to 68286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,063 DEBUG Processing 67/351 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,084 DEBUG Processing 35/629 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,104 DEBUG Processing 135/1109 atomic regions from SNP 40326 to 40926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,201 DEBUG Processing 227/852 atomic regions from SNP 67986 to 68586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,203 DEBUG Processing 223/830 atomic regions from SNP 66653 to 67253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,253 DEBUG Processing 163/993 atomic regions from SNP 48634 to 49234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,289 DEBUG Processing 68/351 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,306 DEBUG Processing 36/629 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,369 DEBUG Processing 136/1109 atomic regions from SNP 40626 to 41226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,422 DEBUG Processing 228/852 atomic regions from SNP 68286 to 68886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,428 DEBUG Processing 224/830 atomic regions from SNP 66953 to 67553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,516 DEBUG Processing 69/351 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,521 DEBUG Processing 164/993 atomic regions from SNP 48934 to 49534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,531 DEBUG Processing 37/629 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,643 DEBUG Processing 137/1109 atomic regions from SNP 40926 to 41526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:20,648 DEBUG Processing 229/852 atomic regions from SNP 68586 to 69186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,661 DEBUG Processing 225/830 atomic regions from SNP 67253 to 67853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,745 DEBUG Processing 70/351 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:20,760 DEBUG Processing 38/629 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:20,778 DEBUG Processing 165/993 atomic regions from SNP 49234 to 49834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:20,958 DEBUG Processing 230/852 atomic regions from SNP 68886 to 69486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:20,980 DEBUG Processing 226/830 atomic regions from SNP 67553 to 68153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:20,999 DEBUG Processing 138/1109 atomic regions from SNP 41226 to 41826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,074 DEBUG Processing 71/351 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,091 DEBUG Processing 39/629 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,138 DEBUG Processing 166/993 atomic regions from SNP 49534 to 50134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,282 DEBUG Processing 231/852 atomic regions from SNP 69186 to 69786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,325 DEBUG Processing 227/830 atomic regions from SNP 67853 to 68453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,388 DEBUG Processing 139/1109 atomic regions from SNP 41526 to 42126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,438 DEBUG Processing 72/351 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,445 DEBUG Processing 40/629 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,530 DEBUG Processing 167/993 atomic regions from SNP 49834 to 50434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,631 DEBUG Processing 232/852 atomic regions from SNP 69486 to 70086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,683 DEBUG Processing 228/830 atomic regions from SNP 68153 to 68753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:21,786 DEBUG Processing 140/1109 atomic regions from SNP 41826 to 42426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:21,820 DEBUG Processing 73/351 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:21,824 DEBUG Processing 41/629 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:21,901 DEBUG Processing 233/852 atomic regions from SNP 69786 to 70386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:21,905 DEBUG Processing 168/993 atomic regions from SNP 50134 to 50734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:21,955 DEBUG Processing 229/830 atomic regions from SNP 68453 to 69053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,145 DEBUG Processing 74/351 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,153 DEBUG Processing 42/629 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,157 DEBUG Processing 141/1109 atomic regions from SNP 42126 to 42726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,245 DEBUG Processing 234/852 atomic regions from SNP 70086 to 70686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,274 DEBUG Processing 230/830 atomic regions from SNP 68753 to 69353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,276 DEBUG Processing 169/993 atomic regions from SNP 50434 to 51034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,428 DEBUG Processing 75/351 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,443 DEBUG Processing 43/629 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,476 DEBUG Processing 142/1109 atomic regions from SNP 42426 to 43026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,540 DEBUG Processing 235/852 atomic regions from SNP 70386 to 70986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,553 DEBUG Processing 231/830 atomic regions from SNP 69053 to 69653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,597 DEBUG Processing 170/993 atomic regions from SNP 50734 to 51334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,659 DEBUG Processing 76/351 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,677 DEBUG Processing 44/629 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:22,754 DEBUG Processing 143/1109 atomic regions from SNP 42726 to 43326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:22,812 DEBUG Processing 236/852 atomic regions from SNP 70686 to 71286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:22,852 DEBUG Processing 232/830 atomic regions from SNP 69353 to 69953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:22,947 DEBUG Processing 171/993 atomic regions from SNP 51034 to 51634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:22,954 DEBUG Processing 77/351 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:22,968 DEBUG Processing 45/629 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,068 DEBUG Processing 144/1109 atomic regions from SNP 43026 to 43626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,103 DEBUG Processing 237/852 atomic regions from SNP 70986 to 71586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,143 DEBUG Processing 233/830 atomic regions from SNP 69653 to 70253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,245 DEBUG Processing 78/351 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,270 DEBUG Processing 46/629 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,296 DEBUG Processing 172/993 atomic regions from SNP 51334 to 51934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,407 DEBUG Processing 145/1109 atomic regions from SNP 43326 to 43926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,413 DEBUG Processing 238/852 atomic regions from SNP 71286 to 71886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,445 DEBUG Processing 234/830 atomic regions from SNP 69953 to 70553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,564 DEBUG Processing 79/351 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,577 DEBUG Processing 47/629 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,635 DEBUG Processing 173/993 atomic regions from SNP 51634 to 52234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,663 DEBUG Processing 239/852 atomic regions from SNP 71586 to 72186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,702 DEBUG Processing 235/830 atomic regions from SNP 70253 to 70853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,717 DEBUG Processing 146/1109 atomic regions from SNP 43626 to 44226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:23,829 DEBUG Processing 80/351 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:23,844 DEBUG Processing 48/629 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:23,900 DEBUG Processing 240/852 atomic regions from SNP 71886 to 72486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:23,931 DEBUG Processing 236/830 atomic regions from SNP 70553 to 71153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:23,951 DEBUG Processing 174/993 atomic regions from SNP 51934 to 52534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:23,992 DEBUG Processing 147/1109 atomic regions from SNP 43926 to 44526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,091 DEBUG Processing 81/351 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,103 DEBUG Processing 49/629 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,202 DEBUG Processing 241/852 atomic regions from SNP 72186 to 72786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,212 DEBUG Processing 237/830 atomic regions from SNP 70853 to 71453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,277 DEBUG Processing 175/993 atomic regions from SNP 52234 to 52834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,288 DEBUG Processing 148/1109 atomic regions from SNP 44226 to 44826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,304 DEBUG Processing 82/351 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,322 DEBUG Processing 50/629 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,430 DEBUG Processing 242/852 atomic regions from SNP 72486 to 73086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,433 DEBUG Processing 238/830 atomic regions from SNP 71153 to 71753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,520 DEBUG Processing 83/351 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,549 DEBUG Processing 51/629 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,555 DEBUG Processing 176/993 atomic regions from SNP 52534 to 53134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,558 DEBUG Processing 149/1109 atomic regions from SNP 44526 to 45126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,665 DEBUG Processing 243/852 atomic regions from SNP 72786 to 73386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,677 DEBUG Processing 239/830 atomic regions from SNP 71453 to 72053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:24,799 DEBUG Processing 84/351 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:24,835 DEBUG Processing 52/629 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:24,863 DEBUG Processing 177/993 atomic regions from SNP 52834 to 53434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:24,906 DEBUG Processing 150/1109 atomic regions from SNP 44826 to 45426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:24,946 DEBUG Processing 244/852 atomic regions from SNP 73086 to 73686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:24,955 DEBUG Processing 240/830 atomic regions from SNP 71753 to 72353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,009 DEBUG Processing 85/351 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,053 DEBUG Processing 53/629 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,109 DEBUG Processing 178/993 atomic regions from SNP 53134 to 53734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,173 DEBUG Processing 151/1109 atomic regions from SNP 45126 to 45726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,234 DEBUG Processing 241/830 atomic regions from SNP 72053 to 72653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,247 DEBUG Processing 245/852 atomic regions from SNP 73386 to 73986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,293 DEBUG Processing 86/351 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,351 DEBUG Processing 54/629 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,389 DEBUG Processing 179/993 atomic regions from SNP 53434 to 54034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,451 DEBUG Processing 152/1109 atomic regions from SNP 45426 to 46026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,488 DEBUG Processing 242/830 atomic regions from SNP 72353 to 72953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,537 DEBUG Processing 246/852 atomic regions from SNP 73686 to 74286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,567 DEBUG Processing 87/351 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,598 DEBUG Processing 55/629 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,639 DEBUG Processing 180/993 atomic regions from SNP 53734 to 54334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,706 DEBUG Processing 243/830 atomic regions from SNP 72653 to 73253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,717 DEBUG Processing 153/1109 atomic regions from SNP 45726 to 46326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:25,788 DEBUG Processing 247/852 atomic regions from SNP 73986 to 74586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,789 DEBUG Processing 88/351 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:25,831 DEBUG Processing 56/629 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:25,904 DEBUG Processing 181/993 atomic regions from SNP 54034 to 54634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:25,924 DEBUG Processing 244/830 atomic regions from SNP 72953 to 73553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:25,971 DEBUG Processing 154/1109 atomic regions from SNP 46026 to 46626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,005 DEBUG Processing 89/351 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,033 DEBUG Processing 248/852 atomic regions from SNP 74286 to 74886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,053 DEBUG Processing 57/629 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,141 DEBUG Processing 245/830 atomic regions from SNP 73253 to 73853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,161 DEBUG Processing 182/993 atomic regions from SNP 54334 to 54934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,220 DEBUG Processing 90/351 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,227 DEBUG Processing 155/1109 atomic regions from SNP 46326 to 46926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,275 DEBUG Processing 249/852 atomic regions from SNP 74586 to 75186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,275 DEBUG Processing 58/629 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,356 DEBUG Processing 246/830 atomic regions from SNP 73553 to 74153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,402 DEBUG Processing 183/993 atomic regions from SNP 54634 to 55234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,435 DEBUG Processing 91/351 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,486 DEBUG Processing 156/1109 atomic regions from SNP 46626 to 47226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,500 DEBUG Processing 250/852 atomic regions from SNP 74886 to 75486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,500 DEBUG Processing 59/629 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,570 DEBUG Processing 247/830 atomic regions from SNP 73853 to 74453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,640 DEBUG Processing 184/993 atomic regions from SNP 54934 to 55534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,647 DEBUG Processing 92/351 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,722 DEBUG Processing 251/852 atomic regions from SNP 75186 to 75786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,722 DEBUG Processing 60/629 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:26,746 DEBUG Processing 157/1109 atomic regions from SNP 46926 to 47526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:26,787 DEBUG Processing 248/830 atomic regions from SNP 74153 to 74753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:26,857 DEBUG Processing 93/351 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:26,878 DEBUG Processing 185/993 atomic regions from SNP 55234 to 55834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:26,945 DEBUG Processing 252/852 atomic regions from SNP 75486 to 76086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,946 DEBUG Processing 61/629 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,003 DEBUG Processing 249/830 atomic regions from SNP 74453 to 75053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,003 DEBUG Processing 158/1109 atomic regions from SNP 47226 to 47826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,065 DEBUG Processing 94/351 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,120 DEBUG Processing 186/993 atomic regions from SNP 55534 to 56134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,170 DEBUG Processing 253/852 atomic regions from SNP 75786 to 76386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,173 DEBUG Processing 62/629 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,222 DEBUG Processing 250/830 atomic regions from SNP 74753 to 75353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,263 DEBUG Processing 159/1109 atomic regions from SNP 47526 to 48126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,298 DEBUG Processing 95/351 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,392 DEBUG Processing 187/993 atomic regions from SNP 55834 to 56434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,397 DEBUG Processing 254/852 atomic regions from SNP 76086 to 76686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,403 DEBUG Processing 63/629 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,441 DEBUG Processing 251/830 atomic regions from SNP 75053 to 75653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,523 DEBUG Processing 160/1109 atomic regions from SNP 47826 to 48426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,529 DEBUG Processing 96/351 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,621 DEBUG Processing 255/852 atomic regions from SNP 76386 to 76986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,626 DEBUG Processing 64/629 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,655 DEBUG Processing 188/993 atomic regions from SNP 56134 to 56734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:27,659 DEBUG Processing 252/830 atomic regions from SNP 75353 to 75953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,764 DEBUG Processing 97/351 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:27,780 DEBUG Processing 161/1109 atomic regions from SNP 48126 to 48726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:27,843 DEBUG Processing 256/852 atomic regions from SNP 76686 to 77286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,849 DEBUG Processing 65/629 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:27,874 DEBUG Processing 253/830 atomic regions from SNP 75653 to 76253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,905 DEBUG Processing 189/993 atomic regions from SNP 56434 to 57034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,006 DEBUG Processing 98/351 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,043 DEBUG Processing 162/1109 atomic regions from SNP 48426 to 49026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,065 DEBUG Processing 257/852 atomic regions from SNP 76986 to 77586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,071 DEBUG Processing 66/629 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,100 DEBUG Processing 254/830 atomic regions from SNP 75953 to 76553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,157 DEBUG Processing 190/993 atomic regions from SNP 56734 to 57334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,251 DEBUG Processing 99/351 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,285 DEBUG Processing 258/852 atomic regions from SNP 77286 to 77886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,288 DEBUG Processing 67/629 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,299 DEBUG Processing 163/1109 atomic regions from SNP 48726 to 49326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,315 DEBUG Processing 255/830 atomic regions from SNP 76253 to 76853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,403 DEBUG Processing 191/993 atomic regions from SNP 57034 to 57634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,495 DEBUG Processing 100/351 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,507 DEBUG Processing 259/852 atomic regions from SNP 77586 to 78186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,508 DEBUG Processing 68/629 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,535 DEBUG Processing 256/830 atomic regions from SNP 76553 to 77153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,558 DEBUG Processing 164/1109 atomic regions from SNP 49026 to 49626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,653 DEBUG Processing 192/993 atomic regions from SNP 57334 to 57934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,730 DEBUG Processing 101/351 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,731 DEBUG Processing 69/629 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,733 DEBUG Processing 260/852 atomic regions from SNP 77886 to 78486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,762 DEBUG Processing 257/830 atomic regions from SNP 76853 to 77453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,833 DEBUG Processing 165/1109 atomic regions from SNP 49326 to 49926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:28,891 DEBUG Processing 193/993 atomic regions from SNP 57634 to 58234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:28,953 DEBUG Processing 70/629 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:28,956 DEBUG Processing 261/852 atomic regions from SNP 78186 to 78786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,982 DEBUG Processing 102/351 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:28,985 DEBUG Processing 258/830 atomic regions from SNP 77153 to 77753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,112 DEBUG Processing 166/1109 atomic regions from SNP 49626 to 50226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,128 DEBUG Processing 194/993 atomic regions from SNP 57934 to 58534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,171 DEBUG Processing 71/629 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,175 DEBUG Processing 262/852 atomic regions from SNP 78486 to 79086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,206 DEBUG Processing 259/830 atomic regions from SNP 77453 to 78053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,213 DEBUG Processing 103/351 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,367 DEBUG Processing 195/993 atomic regions from SNP 58234 to 58834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,369 DEBUG Processing 167/1109 atomic regions from SNP 49926 to 50526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,387 DEBUG Processing 72/629 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,393 DEBUG Processing 263/852 atomic regions from SNP 78786 to 79386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,426 DEBUG Processing 260/830 atomic regions from SNP 77753 to 78353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,426 DEBUG Processing 104/351 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,606 DEBUG Processing 73/629 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,608 DEBUG Processing 196/993 atomic regions from SNP 58534 to 59134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,612 DEBUG Processing 264/852 atomic regions from SNP 79086 to 79686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,628 DEBUG Processing 168/1109 atomic regions from SNP 50226 to 50826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:29,645 DEBUG Processing 105/351 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,649 DEBUG Processing 261/830 atomic regions from SNP 78053 to 78653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,826 DEBUG Processing 74/629 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:29,832 DEBUG Processing 265/852 atomic regions from SNP 79386 to 79986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,853 DEBUG Processing 197/993 atomic regions from SNP 58834 to 59434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:29,859 DEBUG Processing 106/351 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:29,866 DEBUG Processing 262/830 atomic regions from SNP 78353 to 78953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,884 DEBUG Processing 169/1109 atomic regions from SNP 50526 to 51126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,047 DEBUG Processing 75/629 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,057 DEBUG Processing 266/852 atomic regions from SNP 79686 to 80286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,072 DEBUG Processing 107/351 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,082 DEBUG Processing 263/830 atomic regions from SNP 78653 to 79253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,108 DEBUG Processing 198/993 atomic regions from SNP 59134 to 59734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,166 DEBUG Processing 170/1109 atomic regions from SNP 50826 to 51426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,265 DEBUG Processing 76/629 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,288 DEBUG Processing 267/852 atomic regions from SNP 79986 to 80586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,291 DEBUG Processing 108/351 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,298 DEBUG Processing 264/830 atomic regions from SNP 78953 to 79553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,361 DEBUG Processing 199/993 atomic regions from SNP 59434 to 60034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,429 DEBUG Processing 171/1109 atomic regions from SNP 51126 to 51726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,484 DEBUG Processing 77/629 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,509 DEBUG Processing 109/351 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,511 DEBUG Processing 268/852 atomic regions from SNP 80286 to 80886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,515 DEBUG Processing 265/830 atomic regions from SNP 79253 to 79853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,609 DEBUG Processing 200/993 atomic regions from SNP 59734 to 60334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,698 DEBUG Processing 78/629 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,712 DEBUG Processing 172/1109 atomic regions from SNP 51426 to 52026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:30,720 DEBUG Processing 110/351 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,727 DEBUG Processing 269/852 atomic regions from SNP 80586 to 81186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,728 DEBUG Processing 266/830 atomic regions from SNP 79553 to 80153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,856 DEBUG Processing 201/993 atomic regions from SNP 60034 to 60634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:30,913 DEBUG Processing 79/629 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:30,934 DEBUG Processing 111/351 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:30,943 DEBUG Processing 267/830 atomic regions from SNP 79853 to 80453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,944 DEBUG Processing 270/852 atomic regions from SNP 80886 to 81486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,995 DEBUG Processing 173/1109 atomic regions from SNP 51726 to 52326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,106 DEBUG Processing 202/993 atomic regions from SNP 60334 to 60934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,126 DEBUG Processing 80/629 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,149 DEBUG Processing 112/351 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,161 DEBUG Processing 268/830 atomic regions from SNP 80153 to 80753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,163 DEBUG Processing 271/852 atomic regions from SNP 81186 to 81786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,250 DEBUG Processing 174/1109 atomic regions from SNP 52026 to 52626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,348 DEBUG Processing 81/629 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,353 DEBUG Processing 203/993 atomic regions from SNP 60634 to 61234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,358 DEBUG Processing 113/351 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,375 DEBUG Processing 269/830 atomic regions from SNP 80453 to 81053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,382 DEBUG Processing 272/852 atomic regions from SNP 81486 to 82086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,503 DEBUG Processing 175/1109 atomic regions from SNP 52326 to 52926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,567 DEBUG Processing 114/351 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,573 DEBUG Processing 82/629 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,591 DEBUG Processing 270/830 atomic regions from SNP 80753 to 81353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,602 DEBUG Processing 204/993 atomic regions from SNP 60934 to 61534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,605 DEBUG Processing 273/852 atomic regions from SNP 81786 to 82386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,757 DEBUG Processing 176/1109 atomic regions from SNP 52626 to 53226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:31,777 DEBUG Processing 115/351 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:31,796 DEBUG Processing 83/629 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:31,808 DEBUG Processing 271/830 atomic regions from SNP 81053 to 81653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,829 DEBUG Processing 274/852 atomic regions from SNP 82086 to 82686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,858 DEBUG Processing 205/993 atomic regions from SNP 61234 to 61834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:31,988 DEBUG Processing 116/351 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,008 DEBUG Processing 177/1109 atomic regions from SNP 52926 to 53526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,012 DEBUG Processing 84/629 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,025 DEBUG Processing 272/830 atomic regions from SNP 81353 to 81953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,055 DEBUG Processing 275/852 atomic regions from SNP 82386 to 82986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,110 DEBUG Processing 206/993 atomic regions from SNP 61534 to 62134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,204 DEBUG Processing 117/351 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,234 DEBUG Processing 85/629 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,247 DEBUG Processing 273/830 atomic regions from SNP 81653 to 82253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,272 DEBUG Processing 178/1109 atomic regions from SNP 53226 to 53826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,278 DEBUG Processing 276/852 atomic regions from SNP 82686 to 83286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,355 DEBUG Processing 207/993 atomic regions from SNP 61834 to 62434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,447 DEBUG Processing 86/629 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,463 DEBUG Processing 274/830 atomic regions from SNP 81953 to 82553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,496 DEBUG Processing 277/852 atomic regions from SNP 82986 to 83586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,512 DEBUG Processing 118/351 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,536 DEBUG Processing 179/1109 atomic regions from SNP 53526 to 54126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,599 DEBUG Processing 208/993 atomic regions from SNP 62134 to 62734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,662 DEBUG Processing 87/629 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,684 DEBUG Processing 275/830 atomic regions from SNP 82253 to 82853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,715 DEBUG Processing 278/852 atomic regions from SNP 83286 to 83886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,732 DEBUG Processing 119/351 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:32,825 DEBUG Processing 180/1109 atomic regions from SNP 53826 to 54426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:32,848 DEBUG Processing 209/993 atomic regions from SNP 62434 to 63034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:32,879 DEBUG Processing 88/629 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:32,901 DEBUG Processing 276/830 atomic regions from SNP 82553 to 83153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,934 DEBUG Processing 279/852 atomic regions from SNP 83586 to 84186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,947 DEBUG Processing 120/351 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,100 DEBUG Processing 89/629 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,107 DEBUG Processing 210/993 atomic regions from SNP 62734 to 63334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,108 DEBUG Processing 181/1109 atomic regions from SNP 54126 to 54726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,116 DEBUG Processing 277/830 atomic regions from SNP 82853 to 83453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,153 DEBUG Processing 280/852 atomic regions from SNP 83886 to 84486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,166 DEBUG Processing 121/351 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,314 DEBUG Processing 90/629 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,334 DEBUG Processing 278/830 atomic regions from SNP 83153 to 83753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,351 DEBUG Processing 211/993 atomic regions from SNP 63034 to 63634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,372 DEBUG Processing 281/852 atomic regions from SNP 84186 to 84786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,387 DEBUG Processing 122/351 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,391 DEBUG Processing 182/1109 atomic regions from SNP 54426 to 55026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,527 DEBUG Processing 91/629 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,550 DEBUG Processing 279/830 atomic regions from SNP 83453 to 84053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,590 DEBUG Processing 282/852 atomic regions from SNP 84486 to 85086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,604 DEBUG Processing 123/351 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,613 DEBUG Processing 212/993 atomic regions from SNP 63334 to 63934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,685 DEBUG Processing 183/1109 atomic regions from SNP 54726 to 55326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,745 DEBUG Processing 92/629 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,762 DEBUG Processing 280/830 atomic regions from SNP 83753 to 84353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,808 DEBUG Processing 283/852 atomic regions from SNP 84786 to 85386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,817 DEBUG Processing 124/351 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:33,864 DEBUG Processing 213/993 atomic regions from SNP 63634 to 64234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:33,960 DEBUG Processing 184/1109 atomic regions from SNP 55026 to 55626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:33,969 DEBUG Processing 93/629 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:33,976 DEBUG Processing 281/830 atomic regions from SNP 84053 to 84653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,025 DEBUG Processing 284/852 atomic regions from SNP 85086 to 85686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,026 DEBUG Processing 125/351 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,109 DEBUG Processing 214/993 atomic regions from SNP 63934 to 64534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,195 DEBUG Processing 282/830 atomic regions from SNP 84353 to 84953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,196 DEBUG Processing 94/629 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,237 DEBUG Processing 185/1109 atomic regions from SNP 55326 to 55926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,242 DEBUG Processing 285/852 atomic regions from SNP 85386 to 85986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,246 DEBUG Processing 126/351 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,351 DEBUG Processing 215/993 atomic regions from SNP 64234 to 64834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,414 DEBUG Processing 283/830 atomic regions from SNP 84653 to 85253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,433 DEBUG Processing 95/629 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,465 DEBUG Processing 286/852 atomic regions from SNP 85686 to 86286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,468 DEBUG Processing 127/351 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,514 DEBUG Processing 186/1109 atomic regions from SNP 55626 to 56226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,598 DEBUG Processing 216/993 atomic regions from SNP 64534 to 65134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,634 DEBUG Processing 284/830 atomic regions from SNP 84953 to 85553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,683 DEBUG Processing 96/629 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:34,685 DEBUG Processing 128/351 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,687 DEBUG Processing 287/852 atomic regions from SNP 85986 to 86586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,767 DEBUG Processing 187/1109 atomic regions from SNP 55926 to 56526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:34,845 DEBUG Processing 217/993 atomic regions from SNP 64834 to 65434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:34,855 DEBUG Processing 285/830 atomic regions from SNP 85253 to 85853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,901 DEBUG Processing 129/351 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:34,912 DEBUG Processing 288/852 atomic regions from SNP 86286 to 86886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,922 DEBUG Processing 97/629 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,030 DEBUG Processing 188/1109 atomic regions from SNP 56226 to 56826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,074 DEBUG Processing 286/830 atomic regions from SNP 85553 to 86153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,094 DEBUG Processing 218/993 atomic regions from SNP 65134 to 65734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,120 DEBUG Processing 130/351 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,141 DEBUG Processing 289/852 atomic regions from SNP 86586 to 87186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,144 DEBUG Processing 98/629 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,281 DEBUG Processing 189/1109 atomic regions from SNP 56526 to 57126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,293 DEBUG Processing 287/830 atomic regions from SNP 85853 to 86453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,335 DEBUG Processing 131/351 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,346 DEBUG Processing 219/993 atomic regions from SNP 65434 to 66034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,366 DEBUG Processing 290/852 atomic regions from SNP 86886 to 87486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,374 DEBUG Processing 99/629 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,510 DEBUG Processing 288/830 atomic regions from SNP 86153 to 86753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,536 DEBUG Processing 190/1109 atomic regions from SNP 56826 to 57426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,555 DEBUG Processing 132/351 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,593 DEBUG Processing 291/852 atomic regions from SNP 87186 to 87786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,597 DEBUG Processing 220/993 atomic regions from SNP 65734 to 66334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,610 DEBUG Processing 100/629 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,727 DEBUG Processing 289/830 atomic regions from SNP 86453 to 87053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,773 DEBUG Processing 133/351 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:35,820 DEBUG Processing 292/852 atomic regions from SNP 87486 to 88086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,820 DEBUG Processing 191/1109 atomic regions from SNP 57126 to 57726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:35,847 DEBUG Processing 221/993 atomic regions from SNP 66034 to 66634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:35,848 DEBUG Processing 101/629 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:35,939 DEBUG Processing 290/830 atomic regions from SNP 86753 to 87353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,987 DEBUG Processing 134/351 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,046 DEBUG Processing 293/852 atomic regions from SNP 87786 to 88386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,073 DEBUG Processing 102/629 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,100 DEBUG Processing 222/993 atomic regions from SNP 66334 to 66934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,111 DEBUG Processing 192/1109 atomic regions from SNP 57426 to 58026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,155 DEBUG Processing 291/830 atomic regions from SNP 87053 to 87653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,195 DEBUG Processing 135/351 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,269 DEBUG Processing 294/852 atomic regions from SNP 88086 to 88686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,299 DEBUG Processing 103/629 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,352 DEBUG Processing 223/993 atomic regions from SNP 66634 to 67234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,375 DEBUG Processing 193/1109 atomic regions from SNP 57726 to 58326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,385 DEBUG Processing 292/830 atomic regions from SNP 87353 to 87953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,406 DEBUG Processing 136/351 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,484 DEBUG Processing 295/852 atomic regions from SNP 88386 to 88986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,521 DEBUG Processing 104/629 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,600 DEBUG Processing 224/993 atomic regions from SNP 66934 to 67534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,606 DEBUG Processing 293/830 atomic regions from SNP 87653 to 88253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,620 DEBUG Processing 137/351 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,636 DEBUG Processing 194/1109 atomic regions from SNP 58026 to 58626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,698 DEBUG Processing 296/852 atomic regions from SNP 88686 to 89286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,740 DEBUG Processing 105/629 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:36,827 DEBUG Processing 294/830 atomic regions from SNP 87953 to 88553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,836 DEBUG Processing 138/351 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:36,850 DEBUG Processing 225/993 atomic regions from SNP 67234 to 67834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:36,894 DEBUG Processing 195/1109 atomic regions from SNP 58326 to 58926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:36,914 DEBUG Processing 297/852 atomic regions from SNP 88986 to 89586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,975 DEBUG Processing 106/629 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,049 DEBUG Processing 295/830 atomic regions from SNP 88253 to 88853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,057 DEBUG Processing 139/351 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,105 DEBUG Processing 226/993 atomic regions from SNP 67534 to 68134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,132 DEBUG Processing 298/852 atomic regions from SNP 89286 to 89886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,155 DEBUG Processing 196/1109 atomic regions from SNP 58626 to 59226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,203 DEBUG Processing 107/629 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,273 DEBUG Processing 296/830 atomic regions from SNP 88553 to 89153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,276 DEBUG Processing 140/351 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,353 DEBUG Processing 299/852 atomic regions from SNP 89586 to 90186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,357 DEBUG Processing 227/993 atomic regions from SNP 67834 to 68434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,417 DEBUG Processing 108/629 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,417 DEBUG Processing 197/1109 atomic regions from SNP 58926 to 59526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,487 DEBUG Processing 141/351 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,490 DEBUG Processing 297/830 atomic regions from SNP 88853 to 89453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,576 DEBUG Processing 300/852 atomic regions from SNP 89886 to 90486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,602 DEBUG Processing 228/993 atomic regions from SNP 68134 to 68734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,633 DEBUG Processing 109/629 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,690 DEBUG Processing 198/1109 atomic regions from SNP 59226 to 59826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:37,701 DEBUG Processing 142/351 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,707 DEBUG Processing 298/830 atomic regions from SNP 89153 to 89753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,798 DEBUG Processing 301/852 atomic regions from SNP 90186 to 90786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,848 DEBUG Processing 229/993 atomic regions from SNP 68434 to 69034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:37,854 DEBUG Processing 110/629 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:37,917 DEBUG Processing 143/351 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:37,928 DEBUG Processing 299/830 atomic regions from SNP 89453 to 90053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,953 DEBUG Processing 199/1109 atomic regions from SNP 59526 to 60126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,019 DEBUG Processing 302/852 atomic regions from SNP 90486 to 91086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,073 DEBUG Processing 111/629 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,093 DEBUG Processing 230/993 atomic regions from SNP 68734 to 69334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,140 DEBUG Processing 144/351 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,158 DEBUG Processing 300/830 atomic regions from SNP 89753 to 90353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,223 DEBUG Processing 200/1109 atomic regions from SNP 59826 to 60426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,238 DEBUG Processing 303/852 atomic regions from SNP 90786 to 91386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,289 DEBUG Processing 112/629 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,336 DEBUG Processing 231/993 atomic regions from SNP 69034 to 69634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,354 DEBUG Processing 145/351 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,377 DEBUG Processing 301/830 atomic regions from SNP 90053 to 90653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,457 DEBUG Processing 304/852 atomic regions from SNP 91086 to 91686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,496 DEBUG Processing 201/1109 atomic regions from SNP 60126 to 60726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,507 DEBUG Processing 113/629 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,570 DEBUG Processing 146/351 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,579 DEBUG Processing 232/993 atomic regions from SNP 69334 to 69934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,596 DEBUG Processing 302/830 atomic regions from SNP 90353 to 90953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,676 DEBUG Processing 305/852 atomic regions from SNP 91386 to 91986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,722 DEBUG Processing 114/629 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,776 DEBUG Processing 202/1109 atomic regions from SNP 60426 to 61026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:38,784 DEBUG Processing 147/351 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:38,817 DEBUG Processing 303/830 atomic regions from SNP 90653 to 91253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,821 DEBUG Processing 233/993 atomic regions from SNP 69634 to 70234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,897 DEBUG Processing 306/852 atomic regions from SNP 91686 to 92286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,943 DEBUG Processing 115/629 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:38,999 DEBUG Processing 148/351 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,035 DEBUG Processing 203/1109 atomic regions from SNP 60726 to 61326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,037 DEBUG Processing 304/830 atomic regions from SNP 90953 to 91553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,064 DEBUG Processing 234/993 atomic regions from SNP 69934 to 70534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,116 DEBUG Processing 307/852 atomic regions from SNP 91986 to 92586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,160 DEBUG Processing 116/629 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,212 DEBUG Processing 149/351 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,258 DEBUG Processing 305/830 atomic regions from SNP 91253 to 91853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,295 DEBUG Processing 204/1109 atomic regions from SNP 61026 to 61626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,306 DEBUG Processing 235/993 atomic regions from SNP 70234 to 70834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,335 DEBUG Processing 308/852 atomic regions from SNP 92286 to 92886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,379 DEBUG Processing 117/629 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,423 DEBUG Processing 150/351 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,475 DEBUG Processing 306/830 atomic regions from SNP 91553 to 92153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,549 DEBUG Processing 236/993 atomic regions from SNP 70534 to 71134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,553 DEBUG Processing 205/1109 atomic regions from SNP 61326 to 61926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,557 DEBUG Processing 309/852 atomic regions from SNP 92586 to 93186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,600 DEBUG Processing 118/629 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,637 DEBUG Processing 151/351 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,693 DEBUG Processing 307/830 atomic regions from SNP 91853 to 92453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,780 DEBUG Processing 310/852 atomic regions from SNP 92886 to 93486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,795 DEBUG Processing 237/993 atomic regions from SNP 70834 to 71434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,814 DEBUG Processing 206/1109 atomic regions from SNP 61626 to 62226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:39,823 DEBUG Processing 119/629 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:39,849 DEBUG Processing 152/351 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:39,908 DEBUG Processing 308/830 atomic regions from SNP 92153 to 92753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,001 DEBUG Processing 311/852 atomic regions from SNP 93186 to 93786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,042 DEBUG Processing 238/993 atomic regions from SNP 71134 to 71734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,050 DEBUG Processing 120/629 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,069 DEBUG Processing 153/351 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,078 DEBUG Processing 207/1109 atomic regions from SNP 61926 to 62526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,129 DEBUG Processing 309/830 atomic regions from SNP 92453 to 93053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,220 DEBUG Processing 312/852 atomic regions from SNP 93486 to 94086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,278 DEBUG Processing 121/629 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,290 DEBUG Processing 239/993 atomic regions from SNP 71434 to 72034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,304 DEBUG Processing 154/351 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,343 DEBUG Processing 208/1109 atomic regions from SNP 62226 to 62826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,351 DEBUG Processing 310/830 atomic regions from SNP 92753 to 93353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,439 DEBUG Processing 313/852 atomic regions from SNP 93786 to 94386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,499 DEBUG Processing 122/629 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,525 DEBUG Processing 155/351 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,550 DEBUG Processing 240/993 atomic regions from SNP 71734 to 72334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,576 DEBUG Processing 311/830 atomic regions from SNP 93053 to 93653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,608 DEBUG Processing 209/1109 atomic regions from SNP 62526 to 63126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,651 DEBUG Processing 314/852 atomic regions from SNP 94086 to 94686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,718 DEBUG Processing 123/629 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,739 DEBUG Processing 156/351 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:40,798 DEBUG Processing 241/993 atomic regions from SNP 72034 to 72634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,798 DEBUG Processing 312/830 atomic regions from SNP 93353 to 93953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,866 DEBUG Processing 315/852 atomic regions from SNP 94386 to 94986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,866 DEBUG Processing 210/1109 atomic regions from SNP 62826 to 63426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:40,932 DEBUG Processing 124/629 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:40,949 DEBUG Processing 157/351 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,022 DEBUG Processing 313/830 atomic regions from SNP 93653 to 94253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,055 DEBUG Processing 242/993 atomic regions from SNP 72334 to 72934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,088 DEBUG Processing 316/852 atomic regions from SNP 94686 to 95286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,126 DEBUG Processing 211/1109 atomic regions from SNP 63126 to 63726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,148 DEBUG Processing 125/629 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,162 DEBUG Processing 158/351 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,248 DEBUG Processing 314/830 atomic regions from SNP 93953 to 94553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,311 DEBUG Processing 243/993 atomic regions from SNP 72634 to 73234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,313 DEBUG Processing 317/852 atomic regions from SNP 94986 to 95586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,364 DEBUG Processing 126/629 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,371 DEBUG Processing 159/351 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,382 DEBUG Processing 212/1109 atomic regions from SNP 63426 to 64026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,465 DEBUG Processing 315/830 atomic regions from SNP 94253 to 94853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,542 DEBUG Processing 318/852 atomic regions from SNP 95286 to 95886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,566 DEBUG Processing 244/993 atomic regions from SNP 72934 to 73534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,583 DEBUG Processing 127/629 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,585 DEBUG Processing 160/351 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,639 DEBUG Processing 213/1109 atomic regions from SNP 63726 to 64326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,684 DEBUG Processing 316/830 atomic regions from SNP 94553 to 95153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,768 DEBUG Processing 319/852 atomic regions from SNP 95586 to 96186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,797 DEBUG Processing 161/351 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:41,806 DEBUG Processing 128/629 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:41,824 DEBUG Processing 245/993 atomic regions from SNP 73234 to 73834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,895 DEBUG Processing 214/1109 atomic regions from SNP 64026 to 64626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:41,901 DEBUG Processing 317/830 atomic regions from SNP 94853 to 95453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,991 DEBUG Processing 320/852 atomic regions from SNP 95886 to 96486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,010 DEBUG Processing 162/351 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,031 DEBUG Processing 129/629 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,072 DEBUG Processing 246/993 atomic regions from SNP 73534 to 74134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,125 DEBUG Processing 318/830 atomic regions from SNP 95153 to 95753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,159 DEBUG Processing 215/1109 atomic regions from SNP 64326 to 64926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,212 DEBUG Processing 321/852 atomic regions from SNP 96186 to 96786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,219 DEBUG Processing 163/351 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,250 DEBUG Processing 130/629 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,317 DEBUG Processing 247/993 atomic regions from SNP 73834 to 74434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,347 DEBUG Processing 319/830 atomic regions from SNP 95453 to 96053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,418 DEBUG Processing 216/1109 atomic regions from SNP 64626 to 65226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,431 DEBUG Processing 164/351 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,431 DEBUG Processing 322/852 atomic regions from SNP 96486 to 97086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,470 DEBUG Processing 131/629 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,563 DEBUG Processing 248/993 atomic regions from SNP 74134 to 74734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,571 DEBUG Processing 320/830 atomic regions from SNP 95753 to 96353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,645 DEBUG Processing 165/351 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,655 DEBUG Processing 323/852 atomic regions from SNP 96786 to 97386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,675 DEBUG Processing 217/1109 atomic regions from SNP 64926 to 65526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,690 DEBUG Processing 132/629 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,795 DEBUG Processing 321/830 atomic regions from SNP 96053 to 96653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,809 DEBUG Processing 249/993 atomic regions from SNP 74434 to 75034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,862 DEBUG Processing 166/351 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:42,878 DEBUG Processing 324/852 atomic regions from SNP 97086 to 97686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,908 DEBUG Processing 133/629 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:42,930 DEBUG Processing 218/1109 atomic regions from SNP 65226 to 65826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,018 DEBUG Processing 322/830 atomic regions from SNP 96353 to 96953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,055 DEBUG Processing 250/993 atomic regions from SNP 74734 to 75334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,081 DEBUG Processing 167/351 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,104 DEBUG Processing 325/852 atomic regions from SNP 97386 to 97986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,133 DEBUG Processing 134/629 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,184 DEBUG Processing 219/1109 atomic regions from SNP 65526 to 66126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,236 DEBUG Processing 323/830 atomic regions from SNP 96653 to 97253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,299 DEBUG Processing 168/351 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,299 DEBUG Processing 251/993 atomic regions from SNP 75034 to 75634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,326 DEBUG Processing 326/852 atomic regions from SNP 97686 to 98286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,358 DEBUG Processing 135/629 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,436 DEBUG Processing 220/1109 atomic regions from SNP 65826 to 66426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,453 DEBUG Processing 324/830 atomic regions from SNP 96953 to 97553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,517 DEBUG Processing 169/351 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,543 DEBUG Processing 252/993 atomic regions from SNP 75334 to 75934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,551 DEBUG Processing 327/852 atomic regions from SNP 97986 to 98586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,584 DEBUG Processing 136/629 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,673 DEBUG Processing 325/830 atomic regions from SNP 97253 to 97853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,692 DEBUG Processing 221/1109 atomic regions from SNP 66126 to 66726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,733 DEBUG Processing 170/351 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:43,773 DEBUG Processing 328/852 atomic regions from SNP 98286 to 98886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,788 DEBUG Processing 253/993 atomic regions from SNP 75634 to 76234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,810 DEBUG Processing 137/629 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:43,888 DEBUG Processing 326/830 atomic regions from SNP 97553 to 98153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,946 DEBUG Processing 222/1109 atomic regions from SNP 66426 to 67026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,948 DEBUG Processing 171/351 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,013 DEBUG Processing 329/852 atomic regions from SNP 98586 to 99186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,033 DEBUG Processing 138/629 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,034 DEBUG Processing 254/993 atomic regions from SNP 75934 to 76534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,106 DEBUG Processing 327/830 atomic regions from SNP 97853 to 98453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,163 DEBUG Processing 172/351 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,205 DEBUG Processing 223/1109 atomic regions from SNP 66726 to 67326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,232 DEBUG Processing 330/852 atomic regions from SNP 98886 to 99486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,259 DEBUG Processing 139/629 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,285 DEBUG Processing 255/993 atomic regions from SNP 76234 to 76834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,321 DEBUG Processing 328/830 atomic regions from SNP 98153 to 98753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,377 DEBUG Processing 173/351 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,455 DEBUG Processing 331/852 atomic regions from SNP 99186 to 99786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,460 DEBUG Processing 224/1109 atomic regions from SNP 67026 to 67626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,487 DEBUG Processing 140/629 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,540 DEBUG Processing 329/830 atomic regions from SNP 98453 to 99053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,542 DEBUG Processing 256/993 atomic regions from SNP 76534 to 77134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,588 DEBUG Processing 174/351 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,679 DEBUG Processing 332/852 atomic regions from SNP 99486 to 100086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,715 DEBUG Processing 141/629 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,718 DEBUG Processing 225/1109 atomic regions from SNP 67326 to 67926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,761 DEBUG Processing 330/830 atomic regions from SNP 98753 to 99353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,790 DEBUG Processing 257/993 atomic regions from SNP 76834 to 77434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,800 DEBUG Processing 175/351 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:44,899 DEBUG Processing 333/852 atomic regions from SNP 99786 to 100386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,939 DEBUG Processing 142/629 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:44,979 DEBUG Processing 226/1109 atomic regions from SNP 67626 to 68226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,983 DEBUG Processing 331/830 atomic regions from SNP 99053 to 99653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,015 DEBUG Processing 176/351 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,034 DEBUG Processing 258/993 atomic regions from SNP 77134 to 77734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,120 DEBUG Processing 334/852 atomic regions from SNP 100086 to 100686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,166 DEBUG Processing 143/629 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,210 DEBUG Processing 332/830 atomic regions from SNP 99353 to 99953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,237 DEBUG Processing 177/351 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,246 DEBUG Processing 227/1109 atomic regions from SNP 67926 to 68526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,284 DEBUG Processing 259/993 atomic regions from SNP 77434 to 78034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,337 DEBUG Processing 335/852 atomic regions from SNP 100386 to 100986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,388 DEBUG Processing 144/629 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,432 DEBUG Processing 333/830 atomic regions from SNP 99653 to 100253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,458 DEBUG Processing 178/351 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,510 DEBUG Processing 228/1109 atomic regions from SNP 68226 to 68826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,538 DEBUG Processing 260/993 atomic regions from SNP 77734 to 78334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,561 DEBUG Processing 336/852 atomic regions from SNP 100686 to 101286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,609 DEBUG Processing 145/629 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,651 DEBUG Processing 334/830 atomic regions from SNP 99953 to 100553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,673 DEBUG Processing 179/351 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:45,766 DEBUG Processing 229/1109 atomic regions from SNP 68526 to 69126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,783 DEBUG Processing 337/852 atomic regions from SNP 100986 to 101586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,784 DEBUG Processing 261/993 atomic regions from SNP 78034 to 78634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,832 DEBUG Processing 146/629 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:45,866 DEBUG Processing 335/830 atomic regions from SNP 100253 to 100853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,886 DEBUG Processing 180/351 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,025 DEBUG Processing 338/852 atomic regions from SNP 101286 to 101886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,042 DEBUG Processing 262/993 atomic regions from SNP 78334 to 78934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,048 DEBUG Processing 230/1109 atomic regions from SNP 68826 to 69426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,059 DEBUG Processing 147/629 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,084 DEBUG Processing 336/830 atomic regions from SNP 100553 to 101153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,100 DEBUG Processing 181/351 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,252 DEBUG Processing 339/852 atomic regions from SNP 101586 to 102186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,287 DEBUG Processing 148/629 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,294 DEBUG Processing 263/993 atomic regions from SNP 78634 to 79234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,314 DEBUG Processing 231/1109 atomic regions from SNP 69126 to 69726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,321 DEBUG Processing 182/351 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,328 DEBUG Processing 337/830 atomic regions from SNP 100853 to 101453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,481 DEBUG Processing 340/852 atomic regions from SNP 101886 to 102486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,522 DEBUG Processing 149/629 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,551 DEBUG Processing 183/351 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,552 DEBUG Processing 264/993 atomic regions from SNP 78934 to 79534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,567 DEBUG Processing 338/830 atomic regions from SNP 101153 to 101753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,588 DEBUG Processing 232/1109 atomic regions from SNP 69426 to 70026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,705 DEBUG Processing 341/852 atomic regions from SNP 102186 to 102786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,752 DEBUG Processing 150/629 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:46,776 DEBUG Processing 184/351 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:46,805 DEBUG Processing 265/993 atomic regions from SNP 79234 to 79834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,820 DEBUG Processing 339/830 atomic regions from SNP 101453 to 102053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,853 DEBUG Processing 233/1109 atomic regions from SNP 69726 to 70326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,925 DEBUG Processing 342/852 atomic regions from SNP 102486 to 103086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,978 DEBUG Processing 151/629 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,000 DEBUG Processing 185/351 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,051 DEBUG Processing 340/830 atomic regions from SNP 101753 to 102353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,057 DEBUG Processing 266/993 atomic regions from SNP 79534 to 80134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,119 DEBUG Processing 234/1109 atomic regions from SNP 70026 to 70626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,148 DEBUG Processing 343/852 atomic regions from SNP 102786 to 103386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,200 DEBUG Processing 152/629 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,219 DEBUG Processing 186/351 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,279 DEBUG Processing 341/830 atomic regions from SNP 102053 to 102653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,306 DEBUG Processing 267/993 atomic regions from SNP 79834 to 80434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,371 DEBUG Processing 344/852 atomic regions from SNP 103086 to 103686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,382 DEBUG Processing 235/1109 atomic regions from SNP 70326 to 70926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,424 DEBUG Processing 153/629 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,439 DEBUG Processing 187/351 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,507 DEBUG Processing 342/830 atomic regions from SNP 102353 to 102953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,555 DEBUG Processing 268/993 atomic regions from SNP 80134 to 80734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,598 DEBUG Processing 345/852 atomic regions from SNP 103386 to 103986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,651 DEBUG Processing 154/629 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,654 DEBUG Processing 236/1109 atomic regions from SNP 70626 to 71226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,665 DEBUG Processing 188/351 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,739 DEBUG Processing 343/830 atomic regions from SNP 102653 to 103253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,802 DEBUG Processing 269/993 atomic regions from SNP 80434 to 81034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,825 DEBUG Processing 346/852 atomic regions from SNP 103686 to 104286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,879 DEBUG Processing 155/629 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:47,889 DEBUG Processing 189/351 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:47,925 DEBUG Processing 237/1109 atomic regions from SNP 70926 to 71526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,971 DEBUG Processing 344/830 atomic regions from SNP 102953 to 103553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,058 DEBUG Processing 270/993 atomic regions from SNP 80734 to 81334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,078 DEBUG Processing 347/852 atomic regions from SNP 103986 to 104586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,112 DEBUG Processing 156/629 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,113 DEBUG Processing 190/351 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,195 DEBUG Processing 238/1109 atomic regions from SNP 71226 to 71826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,209 DEBUG Processing 345/830 atomic regions from SNP 103253 to 103853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,320 DEBUG Processing 271/993 atomic regions from SNP 81034 to 81634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,326 DEBUG Processing 348/852 atomic regions from SNP 104286 to 104886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,345 DEBUG Processing 157/629 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,384 DEBUG Processing 191/351 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,454 DEBUG Processing 346/830 atomic regions from SNP 103553 to 104153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,484 DEBUG Processing 239/1109 atomic regions from SNP 71526 to 72126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,593 DEBUG Processing 272/993 atomic regions from SNP 81334 to 81934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,603 DEBUG Processing 158/629 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,614 DEBUG Processing 349/852 atomic regions from SNP 104586 to 105186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,671 DEBUG Processing 192/351 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:48,722 DEBUG Processing 347/830 atomic regions from SNP 103853 to 104453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,785 DEBUG Processing 240/1109 atomic regions from SNP 71826 to 72426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,971 DEBUG Processing 159/629 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:48,984 DEBUG Processing 273/993 atomic regions from SNP 81634 to 82234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,985 DEBUG Processing 350/852 atomic regions from SNP 104886 to 105486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,075 DEBUG Processing 193/351 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,112 DEBUG Processing 348/830 atomic regions from SNP 104153 to 104753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,186 DEBUG Processing 241/1109 atomic regions from SNP 72126 to 72726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,231 DEBUG Processing 160/629 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,239 DEBUG Processing 351/852 atomic regions from SNP 105186 to 105786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,263 DEBUG Processing 274/993 atomic regions from SNP 81934 to 82534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,394 DEBUG Processing 194/351 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,460 DEBUG Processing 349/830 atomic regions from SNP 104453 to 105053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,586 DEBUG Processing 352/852 atomic regions from SNP 105486 to 106086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,590 DEBUG Processing 161/629 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,605 DEBUG Processing 242/1109 atomic regions from SNP 72426 to 73026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,621 DEBUG Processing 275/993 atomic regions from SNP 82234 to 82834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,653 DEBUG Processing 195/351 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:49,705 DEBUG Processing 350/830 atomic regions from SNP 104753 to 105353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,873 DEBUG Processing 162/629 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:49,874 DEBUG Processing 353/852 atomic regions from SNP 105786 to 106386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,960 DEBUG Processing 243/1109 atomic regions from SNP 72726 to 73326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,967 DEBUG Processing 276/993 atomic regions from SNP 82534 to 83134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,967 DEBUG Processing 196/351 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,015 DEBUG Processing 351/830 atomic regions from SNP 105053 to 105653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,135 DEBUG Processing 163/629 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,147 DEBUG Processing 354/852 atomic regions from SNP 106086 to 106686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,211 DEBUG Processing 197/351 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,234 DEBUG Processing 277/993 atomic regions from SNP 82834 to 83434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,240 DEBUG Processing 244/1109 atomic regions from SNP 73026 to 73626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,258 DEBUG Processing 352/830 atomic regions from SNP 105353 to 105953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,367 DEBUG Processing 164/629 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,383 DEBUG Processing 355/852 atomic regions from SNP 106386 to 106986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,444 DEBUG Processing 198/351 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,495 DEBUG Processing 353/830 atomic regions from SNP 105653 to 106253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,496 DEBUG Processing 278/993 atomic regions from SNP 83134 to 83734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,516 DEBUG Processing 245/1109 atomic regions from SNP 73326 to 73926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,603 DEBUG Processing 165/629 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,620 DEBUG Processing 356/852 atomic regions from SNP 106686 to 107286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,736 DEBUG Processing 199/351 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:50,822 DEBUG Processing 354/830 atomic regions from SNP 105953 to 106553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,836 DEBUG Processing 279/993 atomic regions from SNP 83434 to 84034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,869 DEBUG Processing 246/1109 atomic regions from SNP 73626 to 74226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,902 DEBUG Processing 166/629 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:50,913 DEBUG Processing 357/852 atomic regions from SNP 106986 to 107586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,005 DEBUG Processing 200/351 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:51,075 DEBUG Processing 355/830 atomic regions from SNP 106253 to 106853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,107 DEBUG Processing 280/993 atomic regions from SNP 83734 to 84334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,146 DEBUG Processing 167/629 atomic regions from SNP 49966 to 50566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,151 DEBUG Processing 247/1109 atomic regions from SNP 73926 to 74526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,158 DEBUG Processing 358/852 atomic regions from SNP 107286 to 107886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,228 DEBUG Processing 201/351 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:51,317 DEBUG Processing 356/830 atomic regions from SNP 106553 to 107153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,370 DEBUG Processing 281/993 atomic regions from SNP 84034 to 84634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,381 DEBUG Processing 168/629 atomic regions from SNP 50266 to 50866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,392 DEBUG Processing 359/852 atomic regions from SNP 107586 to 108186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,420 DEBUG Processing 248/1109 atomic regions from SNP 74226 to 74826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,458 DEBUG Processing 202/351 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:51,546 DEBUG Processing 357/830 atomic regions from SNP 106853 to 107453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,611 DEBUG Processing 169/629 atomic regions from SNP 50566 to 51166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,626 DEBUG Processing 282/993 atomic regions from SNP 84334 to 84934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,629 DEBUG Processing 360/852 atomic regions from SNP 107886 to 108486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,693 DEBUG Processing 249/1109 atomic regions from SNP 74526 to 75126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,696 DEBUG Processing 203/351 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:51,774 DEBUG Processing 358/830 atomic regions from SNP 107153 to 107753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,834 DEBUG Processing 170/629 atomic regions from SNP 50866 to 51466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:51,861 DEBUG Processing 361/852 atomic regions from SNP 108186 to 108786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,881 DEBUG Processing 283/993 atomic regions from SNP 84634 to 85234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,004 DEBUG Processing 204/351 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:52,018 DEBUG Processing 250/1109 atomic regions from SNP 74826 to 75426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,060 DEBUG Processing 359/830 atomic regions from SNP 107453 to 108053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,108 DEBUG Processing 171/629 atomic regions from SNP 51166 to 51766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,129 DEBUG Processing 362/852 atomic regions from SNP 108486 to 109086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,186 DEBUG Processing 284/993 atomic regions from SNP 84934 to 85534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,278 DEBUG Processing 205/351 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:52,334 DEBUG Processing 360/830 atomic regions from SNP 107753 to 108353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,335 DEBUG Processing 251/1109 atomic regions from SNP 75126 to 75726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,340 DEBUG Processing 172/629 atomic regions from SNP 51466 to 52066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,370 DEBUG Processing 363/852 atomic regions from SNP 108786 to 109386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,464 DEBUG Processing 285/993 atomic regions from SNP 85234 to 85834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,557 DEBUG Processing 206/351 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:52,623 DEBUG Processing 173/629 atomic regions from SNP 51766 to 52366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,637 DEBUG Processing 364/852 atomic regions from SNP 109086 to 109686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,642 DEBUG Processing 361/830 atomic regions from SNP 108053 to 108653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,671 DEBUG Processing 252/1109 atomic regions from SNP 75426 to 76026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,743 DEBUG Processing 286/993 atomic regions from SNP 85534 to 86134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,888 DEBUG Processing 207/351 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:52,982 DEBUG Processing 174/629 atomic regions from SNP 52066 to 52666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:52,990 DEBUG Processing 365/852 atomic regions from SNP 109386 to 109986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,002 DEBUG Processing 362/830 atomic regions from SNP 108353 to 108953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,053 DEBUG Processing 253/1109 atomic regions from SNP 75726 to 76326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,059 DEBUG Processing 287/993 atomic regions from SNP 85834 to 86434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,130 DEBUG Processing 208/351 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:53,354 DEBUG Processing 175/629 atomic regions from SNP 52366 to 52966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,410 DEBUG Processing 366/852 atomic regions from SNP 109686 to 110286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,419 DEBUG Processing 363/830 atomic regions from SNP 108653 to 109253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,495 DEBUG Processing 209/351 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:53,503 DEBUG Processing 288/993 atomic regions from SNP 86134 to 86734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,517 DEBUG Processing 254/1109 atomic regions from SNP 76026 to 76626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,690 DEBUG Processing 176/629 atomic regions from SNP 52666 to 53266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:53,828 DEBUG Processing 367/852 atomic regions from SNP 109986 to 110586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,837 DEBUG Processing 364/830 atomic regions from SNP 108953 to 109553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,920 DEBUG Processing 210/351 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:53,954 DEBUG Processing 289/993 atomic regions from SNP 86434 to 87034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,984 DEBUG Processing 255/1109 atomic regions from SNP 76326 to 76926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,070 DEBUG Processing 177/629 atomic regions from SNP 52966 to 53566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,214 DEBUG Processing 368/852 atomic regions from SNP 110286 to 110886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,219 DEBUG Processing 365/830 atomic regions from SNP 109253 to 109853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,337 DEBUG Processing 211/351 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:54,385 DEBUG Processing 290/993 atomic regions from SNP 86734 to 87334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,397 DEBUG Processing 178/629 atomic regions from SNP 53266 to 53866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,427 DEBUG Processing 256/1109 atomic regions from SNP 76626 to 77226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,594 DEBUG Processing 369/852 atomic regions from SNP 110586 to 111186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,598 DEBUG Processing 366/830 atomic regions from SNP 109553 to 110153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,759 DEBUG Processing 212/351 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:54,811 DEBUG Processing 179/629 atomic regions from SNP 53566 to 54166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:54,825 DEBUG Processing 291/993 atomic regions from SNP 87034 to 87634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,864 DEBUG Processing 257/1109 atomic regions from SNP 76926 to 77526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,950 DEBUG Processing 370/852 atomic regions from SNP 110886 to 111486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,959 DEBUG Processing 367/830 atomic regions from SNP 109853 to 110453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,149 DEBUG Processing 213/351 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:55,208 DEBUG Processing 180/629 atomic regions from SNP 53866 to 54466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,241 DEBUG Processing 292/993 atomic regions from SNP 87334 to 87934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,256 DEBUG Processing 371/852 atomic regions from SNP 111186 to 111786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,264 DEBUG Processing 368/830 atomic regions from SNP 110153 to 110753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,267 DEBUG Processing 258/1109 atomic regions from SNP 77226 to 77826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,473 DEBUG Processing 214/351 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:55,637 DEBUG Processing 181/629 atomic regions from SNP 54166 to 54766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:55,677 DEBUG Processing 372/852 atomic regions from SNP 111486 to 112086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,688 DEBUG Processing 369/830 atomic regions from SNP 110453 to 111053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,707 DEBUG Processing 293/993 atomic regions from SNP 87634 to 88234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,735 DEBUG Processing 259/1109 atomic regions from SNP 77526 to 78126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,789 DEBUG Processing 215/351 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:56,022 DEBUG Processing 182/629 atomic regions from SNP 54466 to 55066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,093 DEBUG Processing 373/852 atomic regions from SNP 111786 to 112386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,116 DEBUG Processing 370/830 atomic regions from SNP 110753 to 111353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,146 DEBUG Processing 294/993 atomic regions from SNP 87934 to 88534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,162 DEBUG Processing 216/351 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:56,194 DEBUG Processing 260/1109 atomic regions from SNP 77826 to 78426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,397 DEBUG Processing 183/629 atomic regions from SNP 54766 to 55366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,478 DEBUG Processing 374/852 atomic regions from SNP 112086 to 112686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,526 DEBUG Processing 371/830 atomic regions from SNP 111053 to 111653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,575 DEBUG Processing 295/993 atomic regions from SNP 88234 to 88834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,577 DEBUG Processing 217/351 atomic regions from SNP 65016 to 65617 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:56,615 DEBUG Processing 261/1109 atomic regions from SNP 78126 to 78726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,731 DEBUG Processing 184/629 atomic regions from SNP 55066 to 55666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:56,842 DEBUG Processing 375/852 atomic regions from SNP 112386 to 112986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,883 DEBUG Processing 372/830 atomic regions from SNP 111353 to 111953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,956 DEBUG Processing 296/993 atomic regions from SNP 88534 to 89134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,957 DEBUG Processing 218/351 atomic regions from SNP 65317 to 65918 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:57,034 DEBUG Processing 262/1109 atomic regions from SNP 78426 to 79026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,065 DEBUG Processing 185/629 atomic regions from SNP 55366 to 55966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,163 DEBUG Processing 376/852 atomic regions from SNP 112686 to 113286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,219 DEBUG Processing 373/830 atomic regions from SNP 111653 to 112253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,309 DEBUG Processing 219/351 atomic regions from SNP 65618 to 66219 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:57,321 DEBUG Processing 297/993 atomic regions from SNP 88834 to 89434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,425 DEBUG Processing 186/629 atomic regions from SNP 55666 to 56266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,454 DEBUG Processing 263/1109 atomic regions from SNP 78726 to 79326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,507 DEBUG Processing 377/852 atomic regions from SNP 112986 to 113586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,575 DEBUG Processing 374/830 atomic regions from SNP 111953 to 112553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,663 DEBUG Processing 220/351 atomic regions from SNP 65919 to 66520 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:57,701 DEBUG Processing 298/993 atomic regions from SNP 89134 to 89734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,801 DEBUG Processing 187/629 atomic regions from SNP 55966 to 56566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:57,878 DEBUG Processing 378/852 atomic regions from SNP 113286 to 113886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,885 DEBUG Processing 264/1109 atomic regions from SNP 79026 to 79626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,940 DEBUG Processing 375/830 atomic regions from SNP 112253 to 112853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,025 DEBUG Processing 221/351 atomic regions from SNP 66220 to 66821 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:58,112 DEBUG Processing 299/993 atomic regions from SNP 89434 to 90034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,183 DEBUG Processing 188/629 atomic regions from SNP 56266 to 56866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,270 DEBUG Processing 379/852 atomic regions from SNP 113586 to 114186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,293 DEBUG Processing 376/830 atomic regions from SNP 112553 to 113153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,321 DEBUG Processing 222/351 atomic regions from SNP 66521 to 67122 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:58,325 DEBUG Processing 265/1109 atomic regions from SNP 79326 to 79926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,484 DEBUG Processing 300/993 atomic regions from SNP 89734 to 90334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,536 DEBUG Processing 189/629 atomic regions from SNP 56566 to 57166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:58,647 DEBUG Processing 380/852 atomic regions from SNP 113886 to 114486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,667 DEBUG Processing 377/830 atomic regions from SNP 112853 to 113453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,681 DEBUG Processing 223/351 atomic regions from SNP 66822 to 67423 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:58,729 DEBUG Processing 266/1109 atomic regions from SNP 79626 to 80226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,810 DEBUG Processing 301/993 atomic regions from SNP 90034 to 90634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,842 DEBUG Processing 190/629 atomic regions from SNP 56866 to 57466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,032 DEBUG Processing 378/830 atomic regions from SNP 113153 to 113753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,037 DEBUG Processing 381/852 atomic regions from SNP 114186 to 114786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,060 DEBUG Processing 224/351 atomic regions from SNP 67123 to 67724 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:59,122 DEBUG Processing 191/629 atomic regions from SNP 57166 to 57766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,124 DEBUG Processing 267/1109 atomic regions from SNP 79926 to 80526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,131 DEBUG Processing 302/993 atomic regions from SNP 90334 to 90934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,324 DEBUG Processing 379/830 atomic regions from SNP 113453 to 114053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,326 DEBUG Processing 382/852 atomic regions from SNP 114486 to 115086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,378 DEBUG Processing 225/351 atomic regions from SNP 67424 to 68025 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:59,490 DEBUG Processing 192/629 atomic regions from SNP 57466 to 58066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,516 DEBUG Processing 303/993 atomic regions from SNP 90634 to 91234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,524 DEBUG Processing 268/1109 atomic regions from SNP 80226 to 80826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,559 DEBUG Processing 383/852 atomic regions from SNP 114786 to 115386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,566 DEBUG Processing 380/830 atomic regions from SNP 113753 to 114353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,603 DEBUG Processing 226/351 atomic regions from SNP 67725 to 68326 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:59,841 DEBUG Processing 193/629 atomic regions from SNP 57766 to 58366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:42:59,911 DEBUG Processing 384/852 atomic regions from SNP 115086 to 115686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,922 DEBUG Processing 304/993 atomic regions from SNP 90934 to 91534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,922 DEBUG Processing 227/351 atomic regions from SNP 68026 to 68627 for chrX (subchromosome 5 of 6). 2025-01-31 09:42:59,932 DEBUG Processing 381/830 atomic regions from SNP 114053 to 114653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,949 DEBUG Processing 269/1109 atomic regions from SNP 80526 to 81126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,109 DEBUG Processing 194/629 atomic regions from SNP 58066 to 58666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,291 DEBUG Processing 385/852 atomic regions from SNP 115386 to 115986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,309 DEBUG Processing 228/351 atomic regions from SNP 68327 to 68928 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:00,314 DEBUG Processing 382/830 atomic regions from SNP 114353 to 114953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,333 DEBUG Processing 305/993 atomic regions from SNP 91234 to 91834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,365 DEBUG Processing 270/1109 atomic regions from SNP 80826 to 81426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,376 DEBUG Processing 195/629 atomic regions from SNP 58366 to 58966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,656 DEBUG Processing 386/852 atomic regions from SNP 115686 to 116286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,683 DEBUG Processing 383/830 atomic regions from SNP 114653 to 115253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,751 DEBUG Processing 306/993 atomic regions from SNP 91534 to 92134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,754 DEBUG Processing 196/629 atomic regions from SNP 58666 to 59266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:00,793 DEBUG Processing 271/1109 atomic regions from SNP 81126 to 81726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,799 DEBUG Processing 229/351 atomic regions from SNP 68628 to 69229 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:01,001 DEBUG Processing 387/852 atomic regions from SNP 115986 to 116586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,040 DEBUG Processing 384/830 atomic regions from SNP 114953 to 115553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,154 DEBUG Processing 197/629 atomic regions from SNP 58966 to 59566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,171 DEBUG Processing 307/993 atomic regions from SNP 91834 to 92434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,191 DEBUG Processing 230/351 atomic regions from SNP 68929 to 69530 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:01,237 DEBUG Processing 272/1109 atomic regions from SNP 81426 to 82026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,355 DEBUG Processing 388/852 atomic regions from SNP 116286 to 116886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,416 DEBUG Processing 385/830 atomic regions from SNP 115253 to 115853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,517 DEBUG Processing 198/629 atomic regions from SNP 59266 to 59866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:01,598 DEBUG Processing 308/993 atomic regions from SNP 92134 to 92734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,600 DEBUG Processing 231/351 atomic regions from SNP 69230 to 69831 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:01,697 DEBUG Processing 273/1109 atomic regions from SNP 81726 to 82326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,705 DEBUG Processing 389/852 atomic regions from SNP 116586 to 117186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,803 DEBUG Processing 386/830 atomic regions from SNP 115553 to 116153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,884 DEBUG Processing 199/629 atomic regions from SNP 59566 to 60166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,004 DEBUG Processing 232/351 atomic regions from SNP 69531 to 70132 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:02,023 DEBUG Processing 309/993 atomic regions from SNP 92434 to 93034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,097 DEBUG Processing 390/852 atomic regions from SNP 116886 to 117486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,135 DEBUG Processing 274/1109 atomic regions from SNP 82026 to 82626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,180 DEBUG Processing 387/830 atomic regions from SNP 115853 to 116453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,253 DEBUG Processing 200/629 atomic regions from SNP 59866 to 60466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,390 DEBUG Processing 233/351 atomic regions from SNP 69832 to 70433 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:02,459 DEBUG Processing 310/993 atomic regions from SNP 92734 to 93334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,490 DEBUG Processing 391/852 atomic regions from SNP 117186 to 117786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,558 DEBUG Processing 388/830 atomic regions from SNP 116153 to 116753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,567 DEBUG Processing 275/1109 atomic regions from SNP 82326 to 82926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,628 DEBUG Processing 201/629 atomic regions from SNP 60166 to 60766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:02,769 DEBUG Processing 234/351 atomic regions from SNP 70133 to 70734 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:02,870 DEBUG Processing 311/993 atomic regions from SNP 93034 to 93634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,889 DEBUG Processing 392/852 atomic regions from SNP 117486 to 118086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,958 DEBUG Processing 389/830 atomic regions from SNP 116453 to 117053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,006 DEBUG Processing 202/629 atomic regions from SNP 60466 to 61066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,018 DEBUG Processing 276/1109 atomic regions from SNP 82626 to 83226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,164 DEBUG Processing 235/351 atomic regions from SNP 70434 to 71035 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:03,276 DEBUG Processing 312/993 atomic regions from SNP 93334 to 93934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,281 DEBUG Processing 393/852 atomic regions from SNP 117786 to 118386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,373 DEBUG Processing 390/830 atomic regions from SNP 116753 to 117353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,413 DEBUG Processing 203/629 atomic regions from SNP 60766 to 61366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,473 DEBUG Processing 277/1109 atomic regions from SNP 82926 to 83526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,553 DEBUG Processing 236/351 atomic regions from SNP 70735 to 71336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:03,663 DEBUG Processing 394/852 atomic regions from SNP 118086 to 118686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,676 DEBUG Processing 313/993 atomic regions from SNP 93634 to 94234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,761 DEBUG Processing 391/830 atomic regions from SNP 117053 to 117653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,819 DEBUG Processing 204/629 atomic regions from SNP 61066 to 61666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:03,904 DEBUG Processing 278/1109 atomic regions from SNP 83226 to 83826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,920 DEBUG Processing 237/351 atomic regions from SNP 71036 to 71636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:04,034 DEBUG Processing 395/852 atomic regions from SNP 118386 to 118986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,064 DEBUG Processing 314/993 atomic regions from SNP 93934 to 94534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,154 DEBUG Processing 392/830 atomic regions from SNP 117353 to 117953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,208 DEBUG Processing 205/629 atomic regions from SNP 61366 to 61966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,307 DEBUG Processing 238/351 atomic regions from SNP 71336 to 71936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:04,344 DEBUG Processing 279/1109 atomic regions from SNP 83526 to 84126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,413 DEBUG Processing 396/852 atomic regions from SNP 118686 to 119286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,449 DEBUG Processing 315/993 atomic regions from SNP 94234 to 94834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,534 DEBUG Processing 393/830 atomic regions from SNP 117653 to 118253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,597 DEBUG Processing 206/629 atomic regions from SNP 61666 to 62266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:04,689 DEBUG Processing 239/351 atomic regions from SNP 71636 to 72236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:04,768 DEBUG Processing 280/1109 atomic regions from SNP 83826 to 84426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,797 DEBUG Processing 397/852 atomic regions from SNP 118986 to 119586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,843 DEBUG Processing 316/993 atomic regions from SNP 94534 to 95134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,893 DEBUG Processing 394/830 atomic regions from SNP 117953 to 118553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,955 DEBUG Processing 207/629 atomic regions from SNP 61966 to 62566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,078 DEBUG Processing 240/351 atomic regions from SNP 71936 to 72536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:05,173 DEBUG Processing 398/852 atomic regions from SNP 119286 to 119886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,210 DEBUG Processing 281/1109 atomic regions from SNP 84126 to 84726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,216 DEBUG Processing 317/993 atomic regions from SNP 94834 to 95434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,223 DEBUG Processing 395/830 atomic regions from SNP 118253 to 118853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,235 DEBUG Processing 208/629 atomic regions from SNP 62266 to 62866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,464 DEBUG Processing 241/351 atomic regions from SNP 72236 to 72836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:05,601 DEBUG Processing 399/852 atomic regions from SNP 119586 to 120186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,632 DEBUG Processing 209/629 atomic regions from SNP 62566 to 63166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:05,635 DEBUG Processing 396/830 atomic regions from SNP 118553 to 119153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,658 DEBUG Processing 318/993 atomic regions from SNP 95134 to 95734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,672 DEBUG Processing 282/1109 atomic regions from SNP 84426 to 85026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,821 DEBUG Processing 242/351 atomic regions from SNP 72536 to 73136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:05,979 DEBUG Processing 400/852 atomic regions from SNP 119886 to 120486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,019 DEBUG Processing 210/629 atomic regions from SNP 62866 to 63466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,028 DEBUG Processing 397/830 atomic regions from SNP 118853 to 119453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,049 DEBUG Processing 319/993 atomic regions from SNP 95434 to 96034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,084 DEBUG Processing 283/1109 atomic regions from SNP 84726 to 85326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,184 DEBUG Processing 243/351 atomic regions from SNP 72836 to 73436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:06,344 DEBUG Processing 401/852 atomic regions from SNP 120186 to 120786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,398 DEBUG Processing 211/629 atomic regions from SNP 63166 to 63766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,410 DEBUG Processing 398/830 atomic regions from SNP 119153 to 119753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,463 DEBUG Processing 320/993 atomic regions from SNP 95734 to 96334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,505 DEBUG Processing 284/1109 atomic regions from SNP 85026 to 85626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,548 DEBUG Processing 244/351 atomic regions from SNP 73136 to 73736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:06,720 DEBUG Processing 402/852 atomic regions from SNP 120486 to 121086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,774 DEBUG Processing 212/629 atomic regions from SNP 63466 to 64066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:06,780 DEBUG Processing 399/830 atomic regions from SNP 119453 to 120053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,859 DEBUG Processing 321/993 atomic regions from SNP 96034 to 96634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,931 DEBUG Processing 245/351 atomic regions from SNP 73436 to 74036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:06,939 DEBUG Processing 285/1109 atomic regions from SNP 85326 to 85926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,106 DEBUG Processing 403/852 atomic regions from SNP 120786 to 121386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,167 DEBUG Processing 213/629 atomic regions from SNP 63766 to 64366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,186 DEBUG Processing 400/830 atomic regions from SNP 119753 to 120353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,256 DEBUG Processing 322/993 atomic regions from SNP 96334 to 96934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,327 DEBUG Processing 246/351 atomic regions from SNP 73736 to 74336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:07,375 DEBUG Processing 286/1109 atomic regions from SNP 85626 to 86226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,451 DEBUG Processing 404/852 atomic regions from SNP 121086 to 121686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,539 DEBUG Processing 214/629 atomic regions from SNP 64066 to 64666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,580 DEBUG Processing 401/830 atomic regions from SNP 120053 to 120653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,645 DEBUG Processing 323/993 atomic regions from SNP 96634 to 97234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,696 DEBUG Processing 247/351 atomic regions from SNP 74036 to 74636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:07,783 DEBUG Processing 287/1109 atomic regions from SNP 85926 to 86526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,795 DEBUG Processing 405/852 atomic regions from SNP 121386 to 121986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,902 DEBUG Processing 215/629 atomic regions from SNP 64366 to 64966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:07,973 DEBUG Processing 402/830 atomic regions from SNP 120353 to 120953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,029 DEBUG Processing 324/993 atomic regions from SNP 96934 to 97534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,084 DEBUG Processing 248/351 atomic regions from SNP 74336 to 74936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:08,189 DEBUG Processing 406/852 atomic regions from SNP 121686 to 122286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,197 DEBUG Processing 288/1109 atomic regions from SNP 86226 to 86826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,261 DEBUG Processing 216/629 atomic regions from SNP 64666 to 65266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,375 DEBUG Processing 403/830 atomic regions from SNP 120653 to 121253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,434 DEBUG Processing 325/993 atomic regions from SNP 97234 to 97834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,472 DEBUG Processing 249/351 atomic regions from SNP 74636 to 75236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:08,587 DEBUG Processing 407/852 atomic regions from SNP 121986 to 122586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,628 DEBUG Processing 289/1109 atomic regions from SNP 86526 to 87126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,630 DEBUG Processing 217/629 atomic regions from SNP 64966 to 65566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:08,757 DEBUG Processing 404/830 atomic regions from SNP 120953 to 121553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,842 DEBUG Processing 250/351 atomic regions from SNP 74936 to 75536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:08,843 DEBUG Processing 326/993 atomic regions from SNP 97534 to 98134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,977 DEBUG Processing 408/852 atomic regions from SNP 122286 to 122886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,036 DEBUG Processing 218/629 atomic regions from SNP 65266 to 65866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,105 DEBUG Processing 290/1109 atomic regions from SNP 86826 to 87426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,157 DEBUG Processing 405/830 atomic regions from SNP 121253 to 121853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,232 DEBUG Processing 251/351 atomic regions from SNP 75236 to 75836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:09,249 DEBUG Processing 327/993 atomic regions from SNP 97834 to 98434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,328 DEBUG Processing 409/852 atomic regions from SNP 122586 to 123186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,372 DEBUG Processing 219/629 atomic regions from SNP 65566 to 66166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,540 DEBUG Processing 406/830 atomic regions from SNP 121553 to 122153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,558 DEBUG Processing 291/1109 atomic regions from SNP 87126 to 87726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,576 DEBUG Processing 252/351 atomic regions from SNP 75536 to 76136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:09,611 DEBUG Processing 328/993 atomic regions from SNP 98134 to 98734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,637 DEBUG Processing 410/852 atomic regions from SNP 122886 to 123486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,645 DEBUG Processing 220/629 atomic regions from SNP 65866 to 66466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,864 DEBUG Processing 407/830 atomic regions from SNP 121853 to 122453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,905 DEBUG Processing 253/351 atomic regions from SNP 75836 to 76436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:09,949 DEBUG Processing 292/1109 atomic regions from SNP 87426 to 88026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,970 DEBUG Processing 411/852 atomic regions from SNP 123186 to 123786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,974 DEBUG Processing 221/629 atomic regions from SNP 66166 to 66766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:09,989 DEBUG Processing 329/993 atomic regions from SNP 98434 to 99034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,187 DEBUG Processing 408/830 atomic regions from SNP 122153 to 122753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,253 DEBUG Processing 254/351 atomic regions from SNP 76136 to 76736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:10,351 DEBUG Processing 412/852 atomic regions from SNP 123486 to 124086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,351 DEBUG Processing 222/629 atomic regions from SNP 66466 to 67066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,357 DEBUG Processing 293/1109 atomic regions from SNP 87726 to 88326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,381 DEBUG Processing 330/993 atomic regions from SNP 98734 to 99334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,504 DEBUG Processing 409/830 atomic regions from SNP 122453 to 123053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,604 DEBUG Processing 255/351 atomic regions from SNP 76436 to 77036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:10,697 DEBUG Processing 223/629 atomic regions from SNP 66766 to 67366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,704 DEBUG Processing 413/852 atomic regions from SNP 123786 to 124386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,761 DEBUG Processing 331/993 atomic regions from SNP 99034 to 99634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,769 DEBUG Processing 294/1109 atomic regions from SNP 88026 to 88626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,836 DEBUG Processing 410/830 atomic regions from SNP 122753 to 123353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,911 DEBUG Processing 256/351 atomic regions from SNP 76736 to 77336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:10,937 DEBUG Processing 224/629 atomic regions from SNP 67066 to 67666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:10,959 DEBUG Processing 414/852 atomic regions from SNP 124086 to 124686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,026 DEBUG Processing 332/993 atomic regions from SNP 99334 to 99934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,047 DEBUG Processing 295/1109 atomic regions from SNP 88326 to 88926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,079 DEBUG Processing 411/830 atomic regions from SNP 123053 to 123653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,159 DEBUG Processing 257/351 atomic regions from SNP 77036 to 77636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:11,168 DEBUG Processing 225/629 atomic regions from SNP 67366 to 67966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,191 DEBUG Processing 415/852 atomic regions from SNP 124386 to 124986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,283 DEBUG Processing 333/993 atomic regions from SNP 99634 to 100234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,314 DEBUG Processing 412/830 atomic regions from SNP 123353 to 123953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,315 DEBUG Processing 296/1109 atomic regions from SNP 88626 to 89226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,421 DEBUG Processing 226/629 atomic regions from SNP 67666 to 68266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,429 DEBUG Processing 258/351 atomic regions from SNP 77336 to 77936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:11,448 DEBUG Processing 416/852 atomic regions from SNP 124686 to 125286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,540 DEBUG Processing 334/993 atomic regions from SNP 99934 to 100534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,551 DEBUG Processing 413/830 atomic regions from SNP 123653 to 124253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,593 DEBUG Processing 297/1109 atomic regions from SNP 88926 to 89526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,642 DEBUG Processing 227/629 atomic regions from SNP 67966 to 68566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,662 DEBUG Processing 259/351 atomic regions from SNP 77636 to 78236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:11,687 DEBUG Processing 417/852 atomic regions from SNP 124986 to 125586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,805 DEBUG Processing 414/830 atomic regions from SNP 123953 to 124553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,816 DEBUG Processing 335/993 atomic regions from SNP 100234 to 100834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,862 DEBUG Processing 228/629 atomic regions from SNP 68266 to 68866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:11,877 DEBUG Processing 298/1109 atomic regions from SNP 89226 to 89826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,888 DEBUG Processing 260/351 atomic regions from SNP 77936 to 78536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:11,906 DEBUG Processing 418/852 atomic regions from SNP 125286 to 125886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,065 DEBUG Processing 415/830 atomic regions from SNP 124253 to 124853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,098 DEBUG Processing 336/993 atomic regions from SNP 100534 to 101134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,106 DEBUG Processing 229/629 atomic regions from SNP 68566 to 69166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,138 DEBUG Processing 261/351 atomic regions from SNP 78236 to 78836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:12,144 DEBUG Processing 419/852 atomic regions from SNP 125586 to 126186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,180 DEBUG Processing 299/1109 atomic regions from SNP 89526 to 90126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,325 DEBUG Processing 416/830 atomic regions from SNP 124553 to 125153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,379 DEBUG Processing 230/629 atomic regions from SNP 68866 to 69466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,391 DEBUG Processing 337/993 atomic regions from SNP 100834 to 101434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,414 DEBUG Processing 420/852 atomic regions from SNP 125886 to 126486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,416 DEBUG Processing 262/351 atomic regions from SNP 78536 to 79136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:12,485 DEBUG Processing 300/1109 atomic regions from SNP 89826 to 90426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,552 DEBUG Processing 417/830 atomic regions from SNP 124853 to 125453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,637 DEBUG Processing 231/629 atomic regions from SNP 69166 to 69766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,702 DEBUG Processing 338/993 atomic regions from SNP 101134 to 101734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,708 DEBUG Processing 263/351 atomic regions from SNP 78836 to 79436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:12,709 DEBUG Processing 421/852 atomic regions from SNP 126186 to 126786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,814 DEBUG Processing 301/1109 atomic regions from SNP 90126 to 90726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,839 DEBUG Processing 418/830 atomic regions from SNP 125153 to 125753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,874 DEBUG Processing 232/629 atomic regions from SNP 69466 to 70066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:12,985 DEBUG Processing 264/351 atomic regions from SNP 79136 to 79736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:12,987 DEBUG Processing 422/852 atomic regions from SNP 126486 to 127086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,007 DEBUG Processing 339/993 atomic regions from SNP 101434 to 102034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,150 DEBUG Processing 419/830 atomic regions from SNP 125453 to 126053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,178 DEBUG Processing 233/629 atomic regions from SNP 69766 to 70366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,193 DEBUG Processing 302/1109 atomic regions from SNP 90426 to 91026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,265 DEBUG Processing 265/351 atomic regions from SNP 79436 to 80036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:13,266 DEBUG Processing 423/852 atomic regions from SNP 126786 to 127386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,324 DEBUG Processing 340/993 atomic regions from SNP 101734 to 102334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,473 DEBUG Processing 420/830 atomic regions from SNP 125753 to 126353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,505 DEBUG Processing 234/629 atomic regions from SNP 70066 to 70666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,556 DEBUG Processing 303/1109 atomic regions from SNP 90726 to 91326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,565 DEBUG Processing 266/351 atomic regions from SNP 79736 to 80336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:13,568 DEBUG Processing 424/852 atomic regions from SNP 127086 to 127686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,638 DEBUG Processing 341/993 atomic regions from SNP 102034 to 102634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,820 DEBUG Processing 421/830 atomic regions from SNP 126053 to 126653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,874 DEBUG Processing 235/629 atomic regions from SNP 70366 to 70966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:13,923 DEBUG Processing 267/351 atomic regions from SNP 80036 to 80636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:13,932 DEBUG Processing 425/852 atomic regions from SNP 127386 to 127986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,962 DEBUG Processing 304/1109 atomic regions from SNP 91026 to 91626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,999 DEBUG Processing 342/993 atomic regions from SNP 102334 to 102934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,159 DEBUG Processing 422/830 atomic regions from SNP 126353 to 126953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,239 DEBUG Processing 236/629 atomic regions from SNP 70666 to 71266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,288 DEBUG Processing 426/852 atomic regions from SNP 127686 to 128286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,292 DEBUG Processing 268/351 atomic regions from SNP 80336 to 80936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:14,365 DEBUG Processing 305/1109 atomic regions from SNP 91326 to 91926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,376 DEBUG Processing 343/993 atomic regions from SNP 102634 to 103234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,482 DEBUG Processing 423/830 atomic regions from SNP 126653 to 127253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,595 DEBUG Processing 237/629 atomic regions from SNP 70966 to 71566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:14,654 DEBUG Processing 427/852 atomic regions from SNP 127986 to 128586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,661 DEBUG Processing 269/351 atomic regions from SNP 80636 to 81236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:14,767 DEBUG Processing 344/993 atomic regions from SNP 102934 to 103534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,788 DEBUG Processing 306/1109 atomic regions from SNP 91626 to 92226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,830 DEBUG Processing 424/830 atomic regions from SNP 126953 to 127553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,917 DEBUG Processing 238/629 atomic regions from SNP 71266 to 71866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,012 DEBUG Processing 428/852 atomic regions from SNP 128286 to 128886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,023 DEBUG Processing 270/351 atomic regions from SNP 80936 to 81536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:15,118 DEBUG Processing 345/993 atomic regions from SNP 103234 to 103834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,134 DEBUG Processing 425/830 atomic regions from SNP 127253 to 127853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,156 DEBUG Processing 307/1109 atomic regions from SNP 91926 to 92526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,226 DEBUG Processing 239/629 atomic regions from SNP 71566 to 72166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,337 DEBUG Processing 429/852 atomic regions from SNP 128586 to 129186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,355 DEBUG Processing 271/351 atomic regions from SNP 81236 to 81836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:15,454 DEBUG Processing 346/993 atomic regions from SNP 103534 to 104134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,466 DEBUG Processing 426/830 atomic regions from SNP 127553 to 128153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,516 DEBUG Processing 240/629 atomic regions from SNP 71866 to 72466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,527 DEBUG Processing 308/1109 atomic regions from SNP 92226 to 92826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,622 DEBUG Processing 430/852 atomic regions from SNP 128886 to 129486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,655 DEBUG Processing 272/351 atomic regions from SNP 81536 to 82136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:15,787 DEBUG Processing 427/830 atomic regions from SNP 127853 to 128453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,803 DEBUG Processing 347/993 atomic regions from SNP 103834 to 104434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,842 DEBUG Processing 241/629 atomic regions from SNP 72166 to 72766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:15,897 DEBUG Processing 309/1109 atomic regions from SNP 92526 to 93126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,898 DEBUG Processing 431/852 atomic regions from SNP 129186 to 129786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,928 DEBUG Processing 273/351 atomic regions from SNP 81836 to 82436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:16,099 DEBUG Processing 428/830 atomic regions from SNP 128153 to 128753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,132 DEBUG Processing 242/629 atomic regions from SNP 72466 to 73066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,136 DEBUG Processing 348/993 atomic regions from SNP 104134 to 104734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,166 DEBUG Processing 274/351 atomic regions from SNP 82136 to 82736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:16,180 DEBUG Processing 432/852 atomic regions from SNP 129486 to 130086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,227 DEBUG Processing 310/1109 atomic regions from SNP 92826 to 93426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,371 DEBUG Processing 429/830 atomic regions from SNP 128453 to 129053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,390 DEBUG Processing 243/629 atomic regions from SNP 72766 to 73366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,440 DEBUG Processing 275/351 atomic regions from SNP 82436 to 83036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:16,444 DEBUG Processing 349/993 atomic regions from SNP 104434 to 105034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,468 DEBUG Processing 433/852 atomic regions from SNP 129786 to 130386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,551 DEBUG Processing 311/1109 atomic regions from SNP 93126 to 93726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,631 DEBUG Processing 244/629 atomic regions from SNP 73066 to 73666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,631 DEBUG Processing 430/830 atomic regions from SNP 128753 to 129353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,735 DEBUG Processing 276/351 atomic regions from SNP 82736 to 83336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:16,763 DEBUG Processing 350/993 atomic regions from SNP 104734 to 105334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,799 DEBUG Processing 434/852 atomic regions from SNP 130086 to 130686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,934 DEBUG Processing 312/1109 atomic regions from SNP 93426 to 94026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,935 DEBUG Processing 245/629 atomic regions from SNP 73366 to 73966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:16,945 DEBUG Processing 431/830 atomic regions from SNP 129053 to 129653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,019 DEBUG Processing 277/351 atomic regions from SNP 83036 to 83636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:17,066 DEBUG Processing 351/993 atomic regions from SNP 105034 to 105634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,102 DEBUG Processing 435/852 atomic regions from SNP 130386 to 130986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,307 DEBUG Processing 246/629 atomic regions from SNP 73666 to 74266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,318 DEBUG Processing 432/830 atomic regions from SNP 129353 to 129953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,356 DEBUG Processing 313/1109 atomic regions from SNP 93726 to 94326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,361 DEBUG Processing 278/351 atomic regions from SNP 83336 to 83936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:17,401 DEBUG Processing 352/993 atomic regions from SNP 105334 to 105934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,408 DEBUG Processing 436/852 atomic regions from SNP 130686 to 131286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,707 DEBUG Processing 247/629 atomic regions from SNP 73966 to 74566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:17,734 DEBUG Processing 433/830 atomic regions from SNP 129653 to 130253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,772 DEBUG Processing 279/351 atomic regions from SNP 83636 to 84236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:17,814 DEBUG Processing 437/852 atomic regions from SNP 130986 to 131586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,825 DEBUG Processing 314/1109 atomic regions from SNP 94026 to 94626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,834 DEBUG Processing 353/993 atomic regions from SNP 105634 to 106234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,052 DEBUG Processing 248/629 atomic regions from SNP 74266 to 74866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,103 DEBUG Processing 434/830 atomic regions from SNP 129953 to 130553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,148 DEBUG Processing 280/351 atomic regions from SNP 83936 to 84536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:18,198 DEBUG Processing 438/852 atomic regions from SNP 131286 to 131886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,211 DEBUG Processing 354/993 atomic regions from SNP 105934 to 106534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,257 DEBUG Processing 315/1109 atomic regions from SNP 94326 to 94926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,395 DEBUG Processing 249/629 atomic regions from SNP 74566 to 75166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,466 DEBUG Processing 435/830 atomic regions from SNP 130253 to 130853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,529 DEBUG Processing 281/351 atomic regions from SNP 84236 to 84836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:18,598 DEBUG Processing 439/852 atomic regions from SNP 131586 to 132186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,615 DEBUG Processing 355/993 atomic regions from SNP 106234 to 106834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,694 DEBUG Processing 316/1109 atomic regions from SNP 94626 to 95226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,758 DEBUG Processing 250/629 atomic regions from SNP 74866 to 75466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,827 DEBUG Processing 436/830 atomic regions from SNP 130553 to 131153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,910 DEBUG Processing 282/351 atomic regions from SNP 84536 to 85136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:19,040 DEBUG Processing 440/852 atomic regions from SNP 131886 to 132486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,049 DEBUG Processing 356/993 atomic regions from SNP 106534 to 107134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,134 DEBUG Processing 317/1109 atomic regions from SNP 94926 to 95526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,134 DEBUG Processing 251/629 atomic regions from SNP 75166 to 75766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,214 DEBUG Processing 437/830 atomic regions from SNP 130853 to 131453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,279 DEBUG Processing 283/351 atomic regions from SNP 84836 to 85436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:19,450 DEBUG Processing 357/993 atomic regions from SNP 106834 to 107434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,455 DEBUG Processing 441/852 atomic regions from SNP 132186 to 132786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,528 DEBUG Processing 252/629 atomic regions from SNP 75466 to 76066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,585 DEBUG Processing 318/1109 atomic regions from SNP 95226 to 95826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,597 DEBUG Processing 438/830 atomic regions from SNP 131153 to 131753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,619 DEBUG Processing 284/351 atomic regions from SNP 85136 to 85736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:19,765 DEBUG Processing 358/993 atomic regions from SNP 107134 to 107734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,789 DEBUG Processing 442/852 atomic regions from SNP 132486 to 133086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,817 DEBUG Processing 253/629 atomic regions from SNP 75766 to 76366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,930 DEBUG Processing 439/830 atomic regions from SNP 131453 to 132053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,931 DEBUG Processing 285/351 atomic regions from SNP 85436 to 86036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:19,971 DEBUG Processing 319/1109 atomic regions from SNP 95526 to 96126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,116 DEBUG Processing 359/993 atomic regions from SNP 107434 to 108034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,150 DEBUG Processing 443/852 atomic regions from SNP 132786 to 133386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,171 DEBUG Processing 254/629 atomic regions from SNP 76066 to 76666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,264 DEBUG Processing 286/351 atomic regions from SNP 85736 to 86336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:20,293 DEBUG Processing 440/830 atomic regions from SNP 131753 to 132353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,422 DEBUG Processing 320/1109 atomic regions from SNP 95826 to 96426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,490 DEBUG Processing 360/993 atomic regions from SNP 107734 to 108334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,541 DEBUG Processing 444/852 atomic regions from SNP 133086 to 133686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,550 DEBUG Processing 255/629 atomic regions from SNP 76366 to 76966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,649 DEBUG Processing 287/351 atomic regions from SNP 86036 to 86636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:20,682 DEBUG Processing 441/830 atomic regions from SNP 132053 to 132653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,826 DEBUG Processing 321/1109 atomic regions from SNP 96126 to 96726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,901 DEBUG Processing 361/993 atomic regions from SNP 108034 to 108634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,960 DEBUG Processing 256/629 atomic regions from SNP 76666 to 77266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,987 DEBUG Processing 445/852 atomic regions from SNP 133386 to 133986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,097 DEBUG Processing 288/351 atomic regions from SNP 86336 to 86936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:21,106 DEBUG Processing 442/830 atomic regions from SNP 132353 to 132953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,276 DEBUG Processing 322/1109 atomic regions from SNP 96426 to 97026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,294 DEBUG Processing 362/993 atomic regions from SNP 108334 to 108934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,310 DEBUG Processing 257/629 atomic regions from SNP 76966 to 77566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,331 DEBUG Processing 446/852 atomic regions from SNP 133686 to 134286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,487 DEBUG Processing 289/351 atomic regions from SNP 86636 to 87236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:21,505 DEBUG Processing 443/830 atomic regions from SNP 132653 to 133253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,676 DEBUG Processing 258/629 atomic regions from SNP 77266 to 77866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,703 DEBUG Processing 323/1109 atomic regions from SNP 96726 to 97326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,703 DEBUG Processing 447/852 atomic regions from SNP 133986 to 134586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,708 DEBUG Processing 363/993 atomic regions from SNP 108634 to 109234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,870 DEBUG Processing 290/351 atomic regions from SNP 86936 to 87536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:21,890 DEBUG Processing 444/830 atomic regions from SNP 132953 to 133553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,072 DEBUG Processing 259/629 atomic regions from SNP 77566 to 78166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,122 DEBUG Processing 448/852 atomic regions from SNP 134286 to 134886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,156 DEBUG Processing 364/993 atomic regions from SNP 108934 to 109534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,164 DEBUG Processing 324/1109 atomic regions from SNP 97026 to 97626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,271 DEBUG Processing 291/351 atomic regions from SNP 87236 to 87836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:22,282 DEBUG Processing 445/830 atomic regions from SNP 133253 to 133853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,447 DEBUG Processing 260/629 atomic regions from SNP 77866 to 78466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,537 DEBUG Processing 449/852 atomic regions from SNP 134586 to 135186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,596 DEBUG Processing 365/993 atomic regions from SNP 109234 to 109834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,626 DEBUG Processing 325/1109 atomic regions from SNP 97326 to 97926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,648 DEBUG Processing 292/351 atomic regions from SNP 87536 to 88136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:22,681 DEBUG Processing 446/830 atomic regions from SNP 133553 to 134153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,843 DEBUG Processing 261/629 atomic regions from SNP 78166 to 78766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,910 DEBUG Processing 450/852 atomic regions from SNP 134886 to 135486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,013 DEBUG Processing 366/993 atomic regions from SNP 109534 to 110134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,090 DEBUG Processing 293/351 atomic regions from SNP 87836 to 88436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:23,103 DEBUG Processing 326/1109 atomic regions from SNP 97626 to 98226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,117 DEBUG Processing 447/830 atomic regions from SNP 133853 to 134453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,254 DEBUG Processing 262/629 atomic regions from SNP 78466 to 79066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,358 DEBUG Processing 451/852 atomic regions from SNP 135186 to 135786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,452 DEBUG Processing 367/993 atomic regions from SNP 109834 to 110434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,526 DEBUG Processing 294/351 atomic regions from SNP 88136 to 88736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:23,573 DEBUG Processing 448/830 atomic regions from SNP 134153 to 134753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,601 DEBUG Processing 327/1109 atomic regions from SNP 97926 to 98526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,682 DEBUG Processing 263/629 atomic regions from SNP 78766 to 79366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,811 DEBUG Processing 452/852 atomic regions from SNP 135486 to 136086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,883 DEBUG Processing 368/993 atomic regions from SNP 110134 to 110734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,008 DEBUG Processing 295/351 atomic regions from SNP 88436 to 89036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:24,017 DEBUG Processing 449/830 atomic regions from SNP 134453 to 135053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,089 DEBUG Processing 328/1109 atomic regions from SNP 98226 to 98826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,142 DEBUG Processing 264/629 atomic regions from SNP 79066 to 79666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,244 DEBUG Processing 453/852 atomic regions from SNP 135786 to 136386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,266 DEBUG Processing 369/993 atomic regions from SNP 110434 to 111034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,386 DEBUG Processing 296/351 atomic regions from SNP 88736 to 89336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:24,393 DEBUG Processing 450/830 atomic regions from SNP 134753 to 135353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,523 DEBUG Processing 329/1109 atomic regions from SNP 98526 to 99126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,546 DEBUG Processing 265/629 atomic regions from SNP 79366 to 79966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,638 DEBUG Processing 454/852 atomic regions from SNP 136086 to 136686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,643 DEBUG Processing 370/993 atomic regions from SNP 110734 to 111334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,670 DEBUG Processing 297/351 atomic regions from SNP 89036 to 89636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:24,697 DEBUG Processing 451/830 atomic regions from SNP 135053 to 135653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,923 DEBUG Processing 266/629 atomic regions from SNP 79666 to 80266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,926 DEBUG Processing 330/1109 atomic regions from SNP 98826 to 99426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,097 DEBUG Processing 455/852 atomic regions from SNP 136386 to 136986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,101 DEBUG Processing 298/351 atomic regions from SNP 89336 to 89936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:25,114 DEBUG Processing 452/830 atomic regions from SNP 135353 to 135953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,120 DEBUG Processing 371/993 atomic regions from SNP 111034 to 111634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,210 DEBUG Processing 267/629 atomic regions from SNP 79966 to 80566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,298 DEBUG Processing 331/1109 atomic regions from SNP 99126 to 99726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,557 DEBUG Processing 299/351 atomic regions from SNP 89636 to 90236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:25,578 DEBUG Processing 456/852 atomic regions from SNP 136686 to 137286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,581 DEBUG Processing 453/830 atomic regions from SNP 135653 to 136253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,611 DEBUG Processing 372/993 atomic regions from SNP 111334 to 111934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,625 DEBUG Processing 268/629 atomic regions from SNP 80266 to 80866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,729 DEBUG Processing 332/1109 atomic regions from SNP 99426 to 100026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,988 DEBUG Processing 300/351 atomic regions from SNP 89936 to 90536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:26,026 DEBUG Processing 454/830 atomic regions from SNP 135953 to 136553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,045 DEBUG Processing 457/852 atomic regions from SNP 136986 to 137586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,084 DEBUG Processing 373/993 atomic regions from SNP 111634 to 112234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,087 DEBUG Processing 269/629 atomic regions from SNP 80566 to 81166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,190 DEBUG Processing 333/1109 atomic regions from SNP 99726 to 100326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,397 DEBUG Processing 301/351 atomic regions from SNP 90236 to 90836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:26,436 DEBUG Processing 455/830 atomic regions from SNP 136253 to 136853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,479 DEBUG Processing 458/852 atomic regions from SNP 137286 to 137886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,491 DEBUG Processing 270/629 atomic regions from SNP 80866 to 81466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,520 DEBUG Processing 374/993 atomic regions from SNP 111934 to 112534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,601 DEBUG Processing 334/1109 atomic regions from SNP 100026 to 100626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,802 DEBUG Processing 302/351 atomic regions from SNP 90536 to 91136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:26,844 DEBUG Processing 456/830 atomic regions from SNP 136553 to 137153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,924 DEBUG Processing 271/629 atomic regions from SNP 81166 to 81766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,954 DEBUG Processing 459/852 atomic regions from SNP 137586 to 138186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,999 DEBUG Processing 375/993 atomic regions from SNP 112234 to 112834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,058 DEBUG Processing 335/1109 atomic regions from SNP 100326 to 100926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,174 DEBUG Processing 303/351 atomic regions from SNP 90836 to 91436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:27,216 DEBUG Processing 457/830 atomic regions from SNP 136853 to 137453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,333 DEBUG Processing 272/629 atomic regions from SNP 81466 to 82066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,417 DEBUG Processing 460/852 atomic regions from SNP 137886 to 138486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,451 DEBUG Processing 376/993 atomic regions from SNP 112534 to 113134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,557 DEBUG Processing 304/351 atomic regions from SNP 91136 to 91736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:27,561 DEBUG Processing 336/1109 atomic regions from SNP 100626 to 101226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,596 DEBUG Processing 458/830 atomic regions from SNP 137153 to 137753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,714 DEBUG Processing 273/629 atomic regions from SNP 81766 to 82366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,867 DEBUG Processing 461/852 atomic regions from SNP 138186 to 138786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,921 DEBUG Processing 377/993 atomic regions from SNP 112834 to 113434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,967 DEBUG Processing 305/351 atomic regions from SNP 91436 to 92036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:27,984 DEBUG Processing 459/830 atomic regions from SNP 137453 to 138053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,031 DEBUG Processing 337/1109 atomic regions from SNP 100926 to 101526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,040 DEBUG Processing 274/629 atomic regions from SNP 82066 to 82666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,263 DEBUG Processing 462/852 atomic regions from SNP 138486 to 139086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,361 DEBUG Processing 378/993 atomic regions from SNP 113134 to 113734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,378 DEBUG Processing 306/351 atomic regions from SNP 91736 to 92336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:28,390 DEBUG Processing 460/830 atomic regions from SNP 137753 to 138353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,445 DEBUG Processing 275/629 atomic regions from SNP 82366 to 82966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,482 DEBUG Processing 338/1109 atomic regions from SNP 101226 to 101826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,586 DEBUG Processing 463/852 atomic regions from SNP 138786 to 139386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,762 DEBUG Processing 379/993 atomic regions from SNP 113434 to 114034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,782 DEBUG Processing 307/351 atomic regions from SNP 92036 to 92636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:28,818 DEBUG Processing 461/830 atomic regions from SNP 138053 to 138653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,860 DEBUG Processing 276/629 atomic regions from SNP 82666 to 83266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,974 DEBUG Processing 339/1109 atomic regions from SNP 101526 to 102126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,979 DEBUG Processing 464/852 atomic regions from SNP 139086 to 139686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,062 DEBUG Processing 308/351 atomic regions from SNP 92336 to 92936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:29,079 DEBUG Processing 380/993 atomic regions from SNP 113734 to 114334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,152 DEBUG Processing 462/830 atomic regions from SNP 138353 to 138953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,229 DEBUG Processing 277/629 atomic regions from SNP 82966 to 83566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,439 DEBUG Processing 465/852 atomic regions from SNP 139386 to 139986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,440 DEBUG Processing 340/1109 atomic regions from SNP 101826 to 102426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,451 DEBUG Processing 309/351 atomic regions from SNP 92636 to 93236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:29,505 DEBUG Processing 381/993 atomic regions from SNP 114034 to 114634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,510 DEBUG Processing 463/830 atomic regions from SNP 138653 to 139253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,554 DEBUG Processing 278/629 atomic regions from SNP 83266 to 83866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,860 DEBUG Processing 466/852 atomic regions from SNP 139686 to 140286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,877 DEBUG Processing 310/351 atomic regions from SNP 92936 to 93536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:29,884 DEBUG Processing 341/1109 atomic regions from SNP 102126 to 102726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,939 DEBUG Processing 464/830 atomic regions from SNP 138953 to 139553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,939 DEBUG Processing 279/629 atomic regions from SNP 83566 to 84166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,967 DEBUG Processing 382/993 atomic regions from SNP 114334 to 114934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,285 DEBUG Processing 467/852 atomic regions from SNP 139986 to 140586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,305 DEBUG Processing 311/351 atomic regions from SNP 93236 to 93836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:30,348 DEBUG Processing 342/1109 atomic regions from SNP 102426 to 103026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,379 DEBUG Processing 280/629 atomic regions from SNP 83866 to 84466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,383 DEBUG Processing 465/830 atomic regions from SNP 139253 to 139853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,428 DEBUG Processing 383/993 atomic regions from SNP 114634 to 115234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,712 DEBUG Processing 312/351 atomic regions from SNP 93536 to 94136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:30,729 DEBUG Processing 468/852 atomic regions from SNP 140286 to 140886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,827 DEBUG Processing 343/1109 atomic regions from SNP 102726 to 103326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,827 DEBUG Processing 281/629 atomic regions from SNP 84166 to 84766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,835 DEBUG Processing 466/830 atomic regions from SNP 139553 to 140153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,916 DEBUG Processing 384/993 atomic regions from SNP 114934 to 115534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,101 DEBUG Processing 313/351 atomic regions from SNP 93836 to 94436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:31,149 DEBUG Processing 469/852 atomic regions from SNP 140586 to 141186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,268 DEBUG Processing 282/629 atomic regions from SNP 84466 to 85066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,268 DEBUG Processing 467/830 atomic regions from SNP 139853 to 140453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,316 DEBUG Processing 344/1109 atomic regions from SNP 103026 to 103626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,415 DEBUG Processing 385/993 atomic regions from SNP 115234 to 115834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,495 DEBUG Processing 314/351 atomic regions from SNP 94136 to 94736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:31,533 DEBUG Processing 470/852 atomic regions from SNP 140886 to 141486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,674 DEBUG Processing 283/629 atomic regions from SNP 84766 to 85366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,686 DEBUG Processing 468/830 atomic regions from SNP 140153 to 140753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,798 DEBUG Processing 345/1109 atomic regions from SNP 103326 to 103926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,882 DEBUG Processing 386/993 atomic regions from SNP 115534 to 116134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,923 DEBUG Processing 315/351 atomic regions from SNP 94436 to 95036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:31,939 DEBUG Processing 471/852 atomic regions from SNP 141186 to 141786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,081 DEBUG Processing 284/629 atomic regions from SNP 85066 to 85666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,120 DEBUG Processing 469/830 atomic regions from SNP 140453 to 141053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,260 DEBUG Processing 346/1109 atomic regions from SNP 103626 to 104226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,346 DEBUG Processing 387/993 atomic regions from SNP 115834 to 116434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,365 DEBUG Processing 316/351 atomic regions from SNP 94736 to 95336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:32,384 DEBUG Processing 472/852 atomic regions from SNP 141486 to 142086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,474 DEBUG Processing 285/629 atomic regions from SNP 85366 to 85966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,503 DEBUG Processing 470/830 atomic regions from SNP 140753 to 141353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,692 DEBUG Processing 347/1109 atomic regions from SNP 103926 to 104526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,766 DEBUG Processing 317/351 atomic regions from SNP 95036 to 95636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:32,775 DEBUG Processing 388/993 atomic regions from SNP 116134 to 116734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,775 DEBUG Processing 473/852 atomic regions from SNP 141786 to 142386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,856 DEBUG Processing 286/629 atomic regions from SNP 85666 to 86266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,872 DEBUG Processing 471/830 atomic regions from SNP 141053 to 141653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,092 DEBUG Processing 348/1109 atomic regions from SNP 104226 to 104826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,107 DEBUG Processing 318/351 atomic regions from SNP 95336 to 95936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:33,123 DEBUG Processing 474/852 atomic regions from SNP 142086 to 142686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,146 DEBUG Processing 389/993 atomic regions from SNP 116434 to 117034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,257 DEBUG Processing 472/830 atomic regions from SNP 141353 to 141953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,258 DEBUG Processing 287/629 atomic regions from SNP 85966 to 86566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,368 DEBUG Processing 319/351 atomic regions from SNP 95636 to 96236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:33,382 DEBUG Processing 475/852 atomic regions from SNP 142386 to 142986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,423 DEBUG Processing 349/1109 atomic regions from SNP 104526 to 105126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,425 DEBUG Processing 390/993 atomic regions from SNP 116734 to 117334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,599 DEBUG Processing 288/629 atomic regions from SNP 86266 to 86866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,606 DEBUG Processing 473/830 atomic regions from SNP 141653 to 142253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,728 DEBUG Processing 320/351 atomic regions from SNP 95936 to 96536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:33,753 DEBUG Processing 476/852 atomic regions from SNP 142686 to 143286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,785 DEBUG Processing 391/993 atomic regions from SNP 117034 to 117634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,788 DEBUG Processing 350/1109 atomic regions from SNP 104826 to 105426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,885 DEBUG Processing 289/629 atomic regions from SNP 86566 to 87166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,924 DEBUG Processing 474/830 atomic regions from SNP 141953 to 142553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,122 DEBUG Processing 321/351 atomic regions from SNP 96236 to 96836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:34,171 DEBUG Processing 477/852 atomic regions from SNP 142986 to 143586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,226 DEBUG Processing 392/993 atomic regions from SNP 117334 to 117934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,241 DEBUG Processing 290/629 atomic regions from SNP 86866 to 87466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,259 DEBUG Processing 351/1109 atomic regions from SNP 105126 to 105726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,264 DEBUG Processing 475/830 atomic regions from SNP 142253 to 142853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,508 DEBUG Processing 322/351 atomic regions from SNP 96536 to 97136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:34,600 DEBUG Processing 478/852 atomic regions from SNP 143286 to 143886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,708 DEBUG Processing 291/629 atomic regions from SNP 87166 to 87766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,717 DEBUG Processing 476/830 atomic regions from SNP 142553 to 143153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,728 DEBUG Processing 393/993 atomic regions from SNP 117634 to 118234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,757 DEBUG Processing 352/1109 atomic regions from SNP 105426 to 106026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,817 DEBUG Processing 323/351 atomic regions from SNP 96836 to 97436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:34,944 DEBUG Processing 479/852 atomic regions from SNP 143586 to 144186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,116 DEBUG Processing 292/629 atomic regions from SNP 87466 to 88066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,149 DEBUG Processing 477/830 atomic regions from SNP 142853 to 143453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,180 DEBUG Processing 324/351 atomic regions from SNP 97136 to 97736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:35,186 DEBUG Processing 394/993 atomic regions from SNP 117934 to 118534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,203 DEBUG Processing 353/1109 atomic regions from SNP 105726 to 106326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,215 DEBUG Processing 480/852 atomic regions from SNP 143886 to 144486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,351 DEBUG Processing 293/629 atomic regions from SNP 87766 to 88366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,498 DEBUG Processing 478/830 atomic regions from SNP 143153 to 143753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,609 DEBUG Processing 325/351 atomic regions from SNP 97436 to 98036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:35,630 DEBUG Processing 395/993 atomic regions from SNP 118234 to 118834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,631 DEBUG Processing 481/852 atomic regions from SNP 144186 to 144786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,652 DEBUG Processing 294/629 atomic regions from SNP 88066 to 88666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,660 DEBUG Processing 354/1109 atomic regions from SNP 106026 to 106626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,725 DEBUG Processing 479/830 atomic regions from SNP 143453 to 144053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,036 DEBUG Processing 326/351 atomic regions from SNP 97736 to 98336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:36,071 DEBUG Processing 482/852 atomic regions from SNP 144486 to 145086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,082 DEBUG Processing 396/993 atomic regions from SNP 118534 to 119134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,110 DEBUG Processing 295/629 atomic regions from SNP 88366 to 88966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,128 DEBUG Processing 480/830 atomic regions from SNP 143753 to 144353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,149 DEBUG Processing 355/1109 atomic regions from SNP 106326 to 106926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,409 DEBUG Processing 327/351 atomic regions from SNP 98036 to 98636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:36,513 DEBUG Processing 483/852 atomic regions from SNP 144786 to 145386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,539 DEBUG Processing 397/993 atomic regions from SNP 118834 to 119434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,543 DEBUG Processing 296/629 atomic regions from SNP 88666 to 89266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,596 DEBUG Processing 481/830 atomic regions from SNP 144053 to 144653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,643 DEBUG Processing 356/1109 atomic regions from SNP 106626 to 107226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,705 DEBUG Processing 328/351 atomic regions from SNP 98336 to 98936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:36,838 DEBUG Processing 484/852 atomic regions from SNP 145086 to 145686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,903 DEBUG Processing 297/629 atomic regions from SNP 88966 to 89566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,949 DEBUG Processing 398/993 atomic regions from SNP 119134 to 119734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,023 DEBUG Processing 482/830 atomic regions from SNP 144353 to 144953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,116 DEBUG Processing 329/351 atomic regions from SNP 98636 to 99236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:37,135 DEBUG Processing 357/1109 atomic regions from SNP 106926 to 107526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,160 DEBUG Processing 485/852 atomic regions from SNP 145386 to 145986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,237 DEBUG Processing 298/629 atomic regions from SNP 89266 to 89866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,326 DEBUG Processing 399/993 atomic regions from SNP 119434 to 120034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,446 DEBUG Processing 483/830 atomic regions from SNP 144653 to 145253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,519 DEBUG Processing 330/351 atomic regions from SNP 98936 to 99536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:37,547 DEBUG Processing 486/852 atomic regions from SNP 145686 to 146286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,549 DEBUG Processing 299/629 atomic regions from SNP 89566 to 90166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,584 DEBUG Processing 358/1109 atomic regions from SNP 107226 to 107826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,608 DEBUG Processing 400/993 atomic regions from SNP 119734 to 120334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,781 DEBUG Processing 484/830 atomic regions from SNP 144953 to 145553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,924 DEBUG Processing 331/351 atomic regions from SNP 99236 to 99836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:37,997 DEBUG Processing 300/629 atomic regions from SNP 89866 to 90466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,009 DEBUG Processing 487/852 atomic regions from SNP 145986 to 146586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,052 DEBUG Processing 401/993 atomic regions from SNP 120034 to 120634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,066 DEBUG Processing 359/1109 atomic regions from SNP 107526 to 108126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,110 DEBUG Processing 485/830 atomic regions from SNP 145253 to 145853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,308 DEBUG Processing 332/351 atomic regions from SNP 99536 to 100136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:38,402 DEBUG Processing 301/629 atomic regions from SNP 90166 to 90766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,455 DEBUG Processing 488/852 atomic regions from SNP 146286 to 146886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,564 DEBUG Processing 402/993 atomic regions from SNP 120334 to 120934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,567 DEBUG Processing 486/830 atomic regions from SNP 145553 to 146153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,583 DEBUG Processing 360/1109 atomic regions from SNP 107826 to 108426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,682 DEBUG Processing 333/351 atomic regions from SNP 99836 to 100436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:38,781 DEBUG Processing 302/629 atomic regions from SNP 90466 to 91066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,838 DEBUG Processing 489/852 atomic regions from SNP 146586 to 147186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,982 DEBUG Processing 487/830 atomic regions from SNP 145853 to 146453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,998 DEBUG Processing 403/993 atomic regions from SNP 120634 to 121234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,038 DEBUG Processing 334/351 atomic regions from SNP 100136 to 100736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:39,061 DEBUG Processing 361/1109 atomic regions from SNP 108126 to 108726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,089 DEBUG Processing 303/629 atomic regions from SNP 90766 to 91366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,199 DEBUG Processing 490/852 atomic regions from SNP 146886 to 147486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,335 DEBUG Processing 488/830 atomic regions from SNP 146153 to 146753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,371 DEBUG Processing 404/993 atomic regions from SNP 120934 to 121534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,433 DEBUG Processing 335/351 atomic regions from SNP 100436 to 101036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:39,466 DEBUG Processing 304/629 atomic regions from SNP 91066 to 91666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,514 DEBUG Processing 362/1109 atomic regions from SNP 108426 to 109026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,542 DEBUG Processing 491/852 atomic regions from SNP 147186 to 147786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,616 DEBUG Processing 489/830 atomic regions from SNP 146453 to 147053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,711 DEBUG Processing 405/993 atomic regions from SNP 121234 to 121834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,756 DEBUG Processing 336/351 atomic regions from SNP 100736 to 101336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:39,763 DEBUG Processing 305/629 atomic regions from SNP 91366 to 91966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,922 DEBUG Processing 490/830 atomic regions from SNP 146753 to 147353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,923 DEBUG Processing 492/852 atomic regions from SNP 147486 to 148086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,933 DEBUG Processing 363/1109 atomic regions from SNP 108726 to 109326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,017 DEBUG Processing 406/993 atomic regions from SNP 121534 to 122134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,038 DEBUG Processing 306/629 atomic regions from SNP 91666 to 92266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,048 DEBUG Processing 337/351 atomic regions from SNP 101036 to 101636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:40,320 DEBUG Processing 491/830 atomic regions from SNP 147053 to 147653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,333 DEBUG Processing 493/852 atomic regions from SNP 147786 to 148386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,364 DEBUG Processing 364/1109 atomic regions from SNP 109026 to 109626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,374 DEBUG Processing 307/629 atomic regions from SNP 91966 to 92566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,381 DEBUG Processing 338/351 atomic regions from SNP 101336 to 101936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:40,389 DEBUG Processing 407/993 atomic regions from SNP 121834 to 122434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,562 DEBUG Processing 492/830 atomic regions from SNP 147353 to 147953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,593 DEBUG Processing 494/852 atomic regions from SNP 148086 to 148686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,671 DEBUG Processing 365/1109 atomic regions from SNP 109326 to 109926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,679 DEBUG Processing 308/629 atomic regions from SNP 92266 to 92866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,687 DEBUG Processing 339/351 atomic regions from SNP 101636 to 102236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:40,713 DEBUG Processing 408/993 atomic regions from SNP 122134 to 122734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,797 DEBUG Processing 493/830 atomic regions from SNP 147653 to 148253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,852 DEBUG Processing 495/852 atomic regions from SNP 148386 to 148986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,956 DEBUG Processing 309/629 atomic regions from SNP 92566 to 93166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,985 DEBUG Processing 340/351 atomic regions from SNP 101936 to 102536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:40,998 DEBUG Processing 366/1109 atomic regions from SNP 109626 to 110226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,039 DEBUG Processing 409/993 atomic regions from SNP 122434 to 123034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,082 DEBUG Processing 494/830 atomic regions from SNP 147953 to 148553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,130 DEBUG Processing 496/852 atomic regions from SNP 148686 to 149286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,187 DEBUG Processing 310/629 atomic regions from SNP 92866 to 93466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,272 DEBUG Processing 341/351 atomic regions from SNP 102236 to 102836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:41,323 DEBUG Processing 367/1109 atomic regions from SNP 109926 to 110526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,387 DEBUG Processing 410/993 atomic regions from SNP 122734 to 123334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,411 DEBUG Processing 495/830 atomic regions from SNP 148253 to 148853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,454 DEBUG Processing 311/629 atomic regions from SNP 93166 to 93766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,457 DEBUG Processing 497/852 atomic regions from SNP 148986 to 149586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,526 DEBUG Processing 342/351 atomic regions from SNP 102536 to 103136 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:41,668 DEBUG Processing 368/1109 atomic regions from SNP 110226 to 110826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,750 DEBUG Processing 411/993 atomic regions from SNP 123034 to 123634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,760 DEBUG Processing 496/830 atomic regions from SNP 148553 to 149153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,796 DEBUG Processing 312/629 atomic regions from SNP 93466 to 94066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,821 DEBUG Processing 343/351 atomic regions from SNP 102836 to 103436 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:41,827 DEBUG Processing 498/852 atomic regions from SNP 149286 to 149886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,973 DEBUG Processing 369/1109 atomic regions from SNP 110526 to 111126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,099 DEBUG Processing 412/993 atomic regions from SNP 123334 to 123934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,101 DEBUG Processing 497/830 atomic regions from SNP 148853 to 149453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,155 DEBUG Processing 313/629 atomic regions from SNP 93766 to 94366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,211 DEBUG Processing 344/351 atomic regions from SNP 103136 to 103736 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:42,233 DEBUG Processing 499/852 atomic regions from SNP 149586 to 150186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,349 DEBUG Processing 370/1109 atomic regions from SNP 110826 to 111426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,386 DEBUG Processing 498/830 atomic regions from SNP 149153 to 149753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,408 DEBUG Processing 413/993 atomic regions from SNP 123634 to 124234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,460 DEBUG Processing 314/629 atomic regions from SNP 94066 to 94666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,577 DEBUG Processing 345/351 atomic regions from SNP 103436 to 104036 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:42,662 DEBUG Processing 500/852 atomic regions from SNP 149886 to 150486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,732 DEBUG Processing 499/830 atomic regions from SNP 149453 to 150053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,736 DEBUG Processing 315/629 atomic regions from SNP 94366 to 94966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,746 DEBUG Processing 371/1109 atomic regions from SNP 111126 to 111726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,758 DEBUG Processing 414/993 atomic regions from SNP 123934 to 124534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,898 DEBUG Processing 346/351 atomic regions from SNP 103736 to 104336 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:43,080 DEBUG Processing 501/852 atomic regions from SNP 150186 to 150786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,109 DEBUG Processing 500/830 atomic regions from SNP 149753 to 150353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,131 DEBUG Processing 316/629 atomic regions from SNP 94666 to 95266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,143 DEBUG Processing 415/993 atomic regions from SNP 124234 to 124834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,153 DEBUG Processing 347/351 atomic regions from SNP 104036 to 104636 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:43,153 DEBUG Processing 372/1109 atomic regions from SNP 111426 to 112026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,388 DEBUG Processing 502/852 atomic regions from SNP 150486 to 151086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,460 DEBUG Processing 501/830 atomic regions from SNP 150053 to 150653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,491 DEBUG Processing 317/629 atomic regions from SNP 94966 to 95566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,533 DEBUG Processing 348/351 atomic regions from SNP 104336 to 104936 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:43,561 DEBUG Processing 416/993 atomic regions from SNP 124534 to 125134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,579 DEBUG Processing 373/1109 atomic regions from SNP 111726 to 112326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,632 DEBUG Processing 503/852 atomic regions from SNP 150786 to 151386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,685 DEBUG Processing 502/830 atomic regions from SNP 150353 to 150953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,741 DEBUG Processing 318/629 atomic regions from SNP 95266 to 95866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,845 DEBUG Processing 349/351 atomic regions from SNP 104636 to 105236 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:43,928 DEBUG Processing 417/993 atomic regions from SNP 124834 to 125434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,956 DEBUG Processing 504/852 atomic regions from SNP 151086 to 151686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,957 DEBUG Processing 374/1109 atomic regions from SNP 112026 to 112626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,957 DEBUG Processing 503/830 atomic regions from SNP 150653 to 151253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,989 DEBUG Processing 319/629 atomic regions from SNP 95566 to 96166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,165 DEBUG Processing 350/351 atomic regions from SNP 104936 to 105536 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:44,347 DEBUG Processing 418/993 atomic regions from SNP 125134 to 125734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,361 DEBUG Processing 504/830 atomic regions from SNP 150953 to 151553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,365 DEBUG Processing 505/852 atomic regions from SNP 151386 to 151986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,368 DEBUG Processing 320/629 atomic regions from SNP 95866 to 96466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,402 DEBUG Processing 351/351 atomic regions from SNP 105236 to 105836 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:44,411 DEBUG Processing 375/1109 atomic regions from SNP 112326 to 112926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,731 DEBUG Unique SNPs positions in subchromosome 5: 105837 2025-01-31 09:43:44,788 DEBUG Processing 419/993 atomic regions from SNP 125434 to 126034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,788 DEBUG Processing 505/830 atomic regions from SNP 151253 to 151853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,806 DEBUG Processing 321/629 atomic regions from SNP 96166 to 96766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,813 DEBUG Processing 506/852 atomic regions from SNP 151686 to 152286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,894 DEBUG Processing 376/1109 atomic regions from SNP 112626 to 113226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,934 DEBUG Subchromosome time: 114.81629054993391, subchromosome SNPs: 105837 2025-01-31 09:43:44,951 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:45,015 DEBUG Processing 506/830 atomic regions from SNP 151553 to 152153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,047 DEBUG Processing 420/993 atomic regions from SNP 125734 to 126334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,057 DEBUG Processing 322/629 atomic regions from SNP 96466 to 97066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,083 DEBUG Processing 507/852 atomic regions from SNP 151986 to 152586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,221 DEBUG Processing 377/1109 atomic regions from SNP 112926 to 113526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,249 DEBUG Processing 507/830 atomic regions from SNP 151853 to 152453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,283 DEBUG Processing 323/629 atomic regions from SNP 96766 to 97366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,303 DEBUG Processing 421/993 atomic regions from SNP 126034 to 126634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,321 DEBUG Processing 508/852 atomic regions from SNP 152286 to 152886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,539 DEBUG Processing 508/830 atomic regions from SNP 152153 to 152753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,553 DEBUG Processing 324/629 atomic regions from SNP 97066 to 97666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,553 DEBUG Processing 378/1109 atomic regions from SNP 113226 to 113826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,588 DEBUG Processing 422/993 atomic regions from SNP 126334 to 126934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,596 DEBUG Processing 509/852 atomic regions from SNP 152586 to 153186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,815 DEBUG Processing 509/830 atomic regions from SNP 152453 to 153053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,848 DEBUG Processing 325/629 atomic regions from SNP 97366 to 97966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,918 DEBUG Processing 379/1109 atomic regions from SNP 113526 to 114126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,924 DEBUG Processing 510/852 atomic regions from SNP 152886 to 153486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,926 DEBUG Processing 423/993 atomic regions from SNP 126634 to 127234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,034 DEBUG Processing 510/830 atomic regions from SNP 152753 to 153353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,082 DEBUG Processing 326/629 atomic regions from SNP 97666 to 98266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,249 DEBUG Processing 511/852 atomic regions from SNP 153186 to 153786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,263 DEBUG Processing 424/993 atomic regions from SNP 126934 to 127534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,271 DEBUG Processing 380/1109 atomic regions from SNP 113826 to 114426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,334 DEBUG Processing 511/830 atomic regions from SNP 153053 to 153653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,347 DEBUG Processing 327/629 atomic regions from SNP 97966 to 98566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,485 DEBUG Processing 512/852 atomic regions from SNP 153486 to 154086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,591 DEBUG Processing 425/993 atomic regions from SNP 127234 to 127834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,608 DEBUG Processing 381/1109 atomic regions from SNP 114126 to 114726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,689 DEBUG Processing 512/830 atomic regions from SNP 153353 to 153953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,724 DEBUG Processing 328/629 atomic regions from SNP 98266 to 98866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,763 DEBUG Processing 513/852 atomic regions from SNP 153786 to 154386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,878 DEBUG Processing 426/993 atomic regions from SNP 127534 to 128134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,933 DEBUG Processing 382/1109 atomic regions from SNP 114426 to 115026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,033 DEBUG Processing 513/830 atomic regions from SNP 153653 to 154253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,095 DEBUG Processing 329/629 atomic regions from SNP 98566 to 99166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,160 DEBUG Processing 514/852 atomic regions from SNP 154086 to 154686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,215 DEBUG Processing 427/993 atomic regions from SNP 127834 to 128434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,284 DEBUG Processing 383/1109 atomic regions from SNP 114726 to 115326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,358 DEBUG Processing 514/830 atomic regions from SNP 153953 to 154553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,463 DEBUG Processing 330/629 atomic regions from SNP 98866 to 99466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,568 DEBUG Processing 515/852 atomic regions from SNP 154386 to 154986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,617 DEBUG Processing 428/993 atomic regions from SNP 128134 to 128734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,691 DEBUG Processing 515/830 atomic regions from SNP 154253 to 154853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,699 DEBUG Processing 384/1109 atomic regions from SNP 115026 to 115626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,829 DEBUG Processing 331/629 atomic regions from SNP 99166 to 99766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,977 DEBUG Processing 516/852 atomic regions from SNP 154686 to 155286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,046 DEBUG Processing 429/993 atomic regions from SNP 128434 to 129034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,093 DEBUG Processing 516/830 atomic regions from SNP 154553 to 155153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,152 DEBUG Processing 385/1109 atomic regions from SNP 115326 to 115926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,177 DEBUG Processing 332/629 atomic regions from SNP 99466 to 100066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,372 DEBUG Processing 517/852 atomic regions from SNP 154986 to 155586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,451 DEBUG Processing 430/993 atomic regions from SNP 128734 to 129334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,526 DEBUG Processing 517/830 atomic regions from SNP 154853 to 155453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,575 DEBUG Processing 333/629 atomic regions from SNP 99766 to 100366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,613 DEBUG Processing 386/1109 atomic regions from SNP 115626 to 116226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,788 DEBUG Processing 518/852 atomic regions from SNP 155286 to 155886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,853 DEBUG Processing 431/993 atomic regions from SNP 129034 to 129634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,961 DEBUG Processing 518/830 atomic regions from SNP 155153 to 155753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,992 DEBUG Processing 334/629 atomic regions from SNP 100066 to 100666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,076 DEBUG Processing 387/1109 atomic regions from SNP 115926 to 116526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,195 DEBUG Processing 519/852 atomic regions from SNP 155586 to 156186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,290 DEBUG Processing 432/993 atomic regions from SNP 129334 to 129934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,382 DEBUG Processing 519/830 atomic regions from SNP 155453 to 156053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,392 DEBUG Processing 335/629 atomic regions from SNP 100366 to 100966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,523 DEBUG Processing 388/1109 atomic regions from SNP 116226 to 116826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,601 DEBUG Processing 520/852 atomic regions from SNP 155886 to 156486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,706 DEBUG Processing 433/993 atomic regions from SNP 129634 to 130234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,784 DEBUG Processing 336/629 atomic regions from SNP 100666 to 101266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,801 DEBUG Processing 520/830 atomic regions from SNP 155753 to 156353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,977 DEBUG Processing 389/1109 atomic regions from SNP 116526 to 117126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,014 DEBUG Processing 521/852 atomic regions from SNP 156186 to 156786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,116 DEBUG Processing 434/993 atomic regions from SNP 129934 to 130534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,176 DEBUG Processing 337/629 atomic regions from SNP 100966 to 101566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,211 DEBUG Processing 521/830 atomic regions from SNP 156053 to 156653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,444 DEBUG Processing 522/852 atomic regions from SNP 156486 to 157086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,452 DEBUG Processing 390/1109 atomic regions from SNP 116826 to 117426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,521 DEBUG Processing 435/993 atomic regions from SNP 130234 to 130834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,530 DEBUG Processing 338/629 atomic regions from SNP 101266 to 101866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,552 DEBUG Processing 522/830 atomic regions from SNP 156353 to 156953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,860 DEBUG Processing 523/852 atomic regions from SNP 156786 to 157386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,903 DEBUG Processing 391/1109 atomic regions from SNP 117126 to 117726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,925 DEBUG Processing 339/629 atomic regions from SNP 101566 to 102166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,933 DEBUG Processing 523/830 atomic regions from SNP 156653 to 157253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,950 DEBUG Processing 436/993 atomic regions from SNP 130534 to 131134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,113 DEBUG Processing 524/852 atomic regions from SNP 157086 to 157686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,304 DEBUG Processing 392/1109 atomic regions from SNP 117426 to 118026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,330 DEBUG Processing 340/629 atomic regions from SNP 101866 to 102466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,331 DEBUG Processing 524/830 atomic regions from SNP 156953 to 157553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,363 DEBUG Processing 437/993 atomic regions from SNP 130834 to 131434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,462 DEBUG Processing 525/852 atomic regions from SNP 157386 to 157986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,723 DEBUG Processing 525/830 atomic regions from SNP 157253 to 157853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,724 DEBUG Processing 341/629 atomic regions from SNP 102166 to 102766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,759 DEBUG Processing 393/1109 atomic regions from SNP 117726 to 118326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,793 DEBUG Processing 438/993 atomic regions from SNP 131134 to 131734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,860 DEBUG Processing 526/852 atomic regions from SNP 157686 to 158286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,071 DEBUG Processing 342/629 atomic regions from SNP 102466 to 103066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,094 DEBUG Processing 526/830 atomic regions from SNP 157553 to 158153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,207 DEBUG Processing 394/1109 atomic regions from SNP 118026 to 118626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,227 DEBUG Processing 439/993 atomic regions from SNP 131434 to 132034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,279 DEBUG Processing 527/852 atomic regions from SNP 157986 to 158586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,381 DEBUG Processing 343/629 atomic regions from SNP 102766 to 103366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,422 DEBUG Processing 527/830 atomic regions from SNP 157853 to 158453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,660 DEBUG Processing 395/1109 atomic regions from SNP 118326 to 118926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,662 DEBUG Processing 440/993 atomic regions from SNP 131734 to 132334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,711 DEBUG Processing 528/852 atomic regions from SNP 158286 to 158886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,762 DEBUG Processing 344/629 atomic regions from SNP 103066 to 103666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,785 DEBUG Processing 528/830 atomic regions from SNP 158153 to 158753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,061 DEBUG Segmenting atomic regions: 2025-01-31 09:43:53,088 DEBUG Processing 441/993 atomic regions from SNP 132034 to 132634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,120 DEBUG Processing 396/1109 atomic regions from SNP 118626 to 119226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,134 DEBUG Processing 529/852 atomic regions from SNP 158586 to 159186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,164 DEBUG Processing 345/629 atomic regions from SNP 103366 to 103966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,168 DEBUG Processing 1/219 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,185 DEBUG Processing 529/830 atomic regions from SNP 158453 to 159053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,528 DEBUG Processing 442/993 atomic regions from SNP 132334 to 132934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,567 DEBUG Processing 530/852 atomic regions from SNP 158886 to 159486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,572 DEBUG Processing 2/219 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:53,588 DEBUG Processing 346/629 atomic regions from SNP 103666 to 104266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,590 DEBUG Processing 397/1109 atomic regions from SNP 118926 to 119526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,604 DEBUG Processing 530/830 atomic regions from SNP 158753 to 159353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,973 DEBUG Processing 443/993 atomic regions from SNP 132634 to 133234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,991 DEBUG Processing 531/852 atomic regions from SNP 159186 to 159786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,996 DEBUG Processing 3/219 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:54,019 DEBUG Processing 347/629 atomic regions from SNP 103966 to 104566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,034 DEBUG Processing 531/830 atomic regions from SNP 159053 to 159653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,069 DEBUG Processing 398/1109 atomic regions from SNP 119226 to 119826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,403 DEBUG Processing 4/219 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:54,414 DEBUG Processing 532/852 atomic regions from SNP 159486 to 160086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,419 DEBUG Processing 444/993 atomic regions from SNP 132934 to 133534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,430 DEBUG Processing 348/629 atomic regions from SNP 104266 to 104866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,438 DEBUG Processing 532/830 atomic regions from SNP 159353 to 159953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,495 DEBUG Processing 399/1109 atomic regions from SNP 119526 to 120126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,771 DEBUG Processing 5/219 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:54,795 DEBUG Processing 533/830 atomic regions from SNP 159653 to 160253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,800 DEBUG Processing 349/629 atomic regions from SNP 104566 to 105166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,817 DEBUG Processing 533/852 atomic regions from SNP 159786 to 160386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,820 DEBUG Processing 445/993 atomic regions from SNP 133234 to 133834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,850 DEBUG Processing 400/1109 atomic regions from SNP 119826 to 120426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,076 DEBUG Processing 6/219 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:55,142 DEBUG Processing 534/830 atomic regions from SNP 159953 to 160553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,151 DEBUG Processing 350/629 atomic regions from SNP 104866 to 105466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,151 DEBUG Processing 534/852 atomic regions from SNP 160086 to 160686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,175 DEBUG Processing 446/993 atomic regions from SNP 133534 to 134134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,205 DEBUG Processing 401/1109 atomic regions from SNP 120126 to 120726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,303 DEBUG Processing 7/219 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:55,454 DEBUG Processing 535/830 atomic regions from SNP 160253 to 160853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,490 DEBUG Processing 351/629 atomic regions from SNP 105166 to 105766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,509 DEBUG Processing 535/852 atomic regions from SNP 160386 to 160986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,552 DEBUG Processing 447/993 atomic regions from SNP 133834 to 134434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,598 DEBUG Processing 8/219 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:55,614 DEBUG Processing 402/1109 atomic regions from SNP 120426 to 121026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,701 DEBUG Processing 536/830 atomic regions from SNP 160553 to 161153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,822 DEBUG Processing 352/629 atomic regions from SNP 105466 to 106066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,842 DEBUG Processing 536/852 atomic regions from SNP 160686 to 161286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,939 DEBUG Processing 448/993 atomic regions from SNP 134134 to 134734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,961 DEBUG Processing 9/219 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:56,010 DEBUG Processing 537/830 atomic regions from SNP 160853 to 161453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,015 DEBUG Processing 403/1109 atomic regions from SNP 120726 to 121326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,094 DEBUG Processing 353/629 atomic regions from SNP 105766 to 106366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,121 DEBUG Processing 537/852 atomic regions from SNP 160986 to 161586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,302 DEBUG Processing 449/993 atomic regions from SNP 134434 to 135034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,325 DEBUG Processing 10/219 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:56,406 DEBUG Processing 538/830 atomic regions from SNP 161153 to 161753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,441 DEBUG Processing 354/629 atomic regions from SNP 106066 to 106666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,452 DEBUG Processing 404/1109 atomic regions from SNP 121026 to 121626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,500 DEBUG Processing 538/852 atomic regions from SNP 161286 to 161886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,612 DEBUG Processing 450/993 atomic regions from SNP 134734 to 135334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,627 DEBUG Processing 11/219 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:56,824 DEBUG Processing 539/830 atomic regions from SNP 161453 to 162053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,884 DEBUG Processing 355/629 atomic regions from SNP 106366 to 106966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,918 DEBUG Processing 405/1109 atomic regions from SNP 121326 to 121926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,940 DEBUG Processing 539/852 atomic regions from SNP 161586 to 162186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,954 DEBUG Processing 12/219 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:56,969 DEBUG Processing 451/993 atomic regions from SNP 135034 to 135634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,149 DEBUG Processing 540/830 atomic regions from SNP 161753 to 162353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,305 DEBUG Processing 356/629 atomic regions from SNP 106666 to 107266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,397 DEBUG Processing 13/219 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:57,414 DEBUG Processing 540/852 atomic regions from SNP 161886 to 162486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,418 DEBUG Processing 406/1109 atomic regions from SNP 121626 to 122226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,426 DEBUG Processing 452/993 atomic regions from SNP 135334 to 135934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,484 DEBUG Processing 541/830 atomic regions from SNP 162053 to 162653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,679 DEBUG Processing 357/629 atomic regions from SNP 106966 to 107566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,853 DEBUG Processing 14/219 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:57,881 DEBUG Processing 541/852 atomic regions from SNP 162186 to 162786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,893 DEBUG Processing 453/993 atomic regions from SNP 135634 to 136234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,932 DEBUG Processing 542/830 atomic regions from SNP 162353 to 162953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,947 DEBUG Processing 407/1109 atomic regions from SNP 121926 to 122526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,986 DEBUG Processing 358/629 atomic regions from SNP 107266 to 107866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,245 DEBUG Processing 15/219 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:58,288 DEBUG Processing 542/852 atomic regions from SNP 162486 to 163086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,315 DEBUG Processing 454/993 atomic regions from SNP 135934 to 136534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,331 DEBUG Processing 543/830 atomic regions from SNP 162653 to 163253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,345 DEBUG Processing 359/629 atomic regions from SNP 107566 to 108166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,384 DEBUG Processing 408/1109 atomic regions from SNP 122226 to 122826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,472 DEBUG Processing 16/219 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:58,590 DEBUG Processing 543/852 atomic regions from SNP 162786 to 163386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,663 DEBUG Processing 455/993 atomic regions from SNP 136234 to 136834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,683 DEBUG Processing 544/830 atomic regions from SNP 162953 to 163553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,684 DEBUG Processing 360/629 atomic regions from SNP 107866 to 108466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,760 DEBUG Processing 17/219 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:58,796 DEBUG Processing 409/1109 atomic regions from SNP 122526 to 123126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,845 DEBUG Processing 544/852 atomic regions from SNP 163086 to 163686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,926 DEBUG Processing 456/993 atomic regions from SNP 136534 to 137134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,960 DEBUG Processing 361/629 atomic regions from SNP 108166 to 108766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,961 DEBUG Processing 545/830 atomic regions from SNP 163253 to 163853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,043 DEBUG Processing 18/219 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:59,105 DEBUG Processing 545/852 atomic regions from SNP 163386 to 163986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,147 DEBUG Processing 410/1109 atomic regions from SNP 122826 to 123426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,194 DEBUG Processing 457/993 atomic regions from SNP 136834 to 137434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,222 DEBUG Processing 546/830 atomic regions from SNP 163553 to 164153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,224 DEBUG Processing 362/629 atomic regions from SNP 108466 to 109066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,320 DEBUG Processing 19/219 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:59,386 DEBUG Processing 546/852 atomic regions from SNP 163686 to 164286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,483 DEBUG Processing 363/629 atomic regions from SNP 108766 to 109366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,493 DEBUG Processing 547/830 atomic regions from SNP 163853 to 164453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,496 DEBUG Processing 458/993 atomic regions from SNP 137134 to 137734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,509 DEBUG Processing 411/1109 atomic regions from SNP 123126 to 123726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,578 DEBUG Processing 20/219 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:59,658 DEBUG Processing 547/852 atomic regions from SNP 163986 to 164586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,784 DEBUG Processing 364/629 atomic regions from SNP 109066 to 109666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,791 DEBUG Processing 548/830 atomic regions from SNP 164153 to 164753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,808 DEBUG Processing 459/993 atomic regions from SNP 137434 to 138034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,844 DEBUG Processing 21/219 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 6). 2025-01-31 09:43:59,887 DEBUG Processing 412/1109 atomic regions from SNP 123426 to 124026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,921 DEBUG Processing 548/852 atomic regions from SNP 164286 to 164886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,047 DEBUG Processing 549/830 atomic regions from SNP 164453 to 165053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,055 DEBUG Processing 365/629 atomic regions from SNP 109366 to 109966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,101 DEBUG Processing 460/993 atomic regions from SNP 137734 to 138334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,134 DEBUG Processing 22/219 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:00,223 DEBUG Processing 549/852 atomic regions from SNP 164586 to 165186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,241 DEBUG Processing 413/1109 atomic regions from SNP 123726 to 124326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,313 DEBUG Processing 366/629 atomic regions from SNP 109666 to 110266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,315 DEBUG Processing 550/830 atomic regions from SNP 164753 to 165353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,385 DEBUG Processing 23/219 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:00,402 DEBUG Processing 461/993 atomic regions from SNP 138034 to 138634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,474 DEBUG Processing 550/852 atomic regions from SNP 164886 to 165486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,528 DEBUG Processing 414/1109 atomic regions from SNP 124026 to 124626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,536 DEBUG Processing 367/629 atomic regions from SNP 109966 to 110566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,568 DEBUG Processing 551/830 atomic regions from SNP 165053 to 165653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,625 DEBUG Processing 24/219 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:00,665 DEBUG Processing 462/993 atomic regions from SNP 138334 to 138934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,729 DEBUG Processing 551/852 atomic regions from SNP 165186 to 165786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,758 DEBUG Processing 368/629 atomic regions from SNP 110266 to 110866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,796 DEBUG Processing 552/830 atomic regions from SNP 165353 to 165953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,805 DEBUG Processing 415/1109 atomic regions from SNP 124326 to 124926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,856 DEBUG Processing 25/219 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:00,929 DEBUG Processing 463/993 atomic regions from SNP 138634 to 139234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,966 DEBUG Processing 552/852 atomic regions from SNP 165486 to 166086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,989 DEBUG Processing 369/629 atomic regions from SNP 110566 to 111166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,029 DEBUG Processing 553/830 atomic regions from SNP 165653 to 166253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,089 DEBUG Processing 416/1109 atomic regions from SNP 124626 to 125226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,091 DEBUG Processing 26/219 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:01,192 DEBUG Processing 464/993 atomic regions from SNP 138934 to 139534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,204 DEBUG Processing 553/852 atomic regions from SNP 165786 to 166386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,225 DEBUG Processing 370/629 atomic regions from SNP 110866 to 111466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,263 DEBUG Processing 554/830 atomic regions from SNP 165953 to 166553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,348 DEBUG Processing 27/219 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:01,372 DEBUG Processing 417/1109 atomic regions from SNP 124926 to 125526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,453 DEBUG Processing 465/993 atomic regions from SNP 139234 to 139834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,456 DEBUG Processing 554/852 atomic regions from SNP 166086 to 166686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,461 DEBUG Processing 371/629 atomic regions from SNP 111166 to 111766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,493 DEBUG Processing 555/830 atomic regions from SNP 166253 to 166853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,580 DEBUG Processing 28/219 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:01,652 DEBUG Processing 418/1109 atomic regions from SNP 125226 to 125826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,696 DEBUG Processing 372/629 atomic regions from SNP 111466 to 112066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,717 DEBUG Processing 466/993 atomic regions from SNP 139534 to 140134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,719 DEBUG Processing 555/852 atomic regions from SNP 166386 to 166986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,721 DEBUG Processing 556/830 atomic regions from SNP 166553 to 167153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,808 DEBUG Processing 29/219 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:01,930 DEBUG Processing 373/629 atomic regions from SNP 111766 to 112366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,931 DEBUG Processing 419/1109 atomic regions from SNP 125526 to 126126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,956 DEBUG Processing 557/830 atomic regions from SNP 166853 to 167453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,975 DEBUG Processing 556/852 atomic regions from SNP 166686 to 167286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,980 DEBUG Processing 467/993 atomic regions from SNP 139834 to 140434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,036 DEBUG Processing 30/219 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:02,164 DEBUG Processing 374/629 atomic regions from SNP 112066 to 112666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,189 DEBUG Processing 558/830 atomic regions from SNP 167153 to 167753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,208 DEBUG Processing 420/1109 atomic regions from SNP 125826 to 126426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,219 DEBUG Processing 557/852 atomic regions from SNP 166986 to 167586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,244 DEBUG Processing 468/993 atomic regions from SNP 140134 to 140734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,275 DEBUG Processing 31/219 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:02,393 DEBUG Processing 375/629 atomic regions from SNP 112366 to 112966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,415 DEBUG Processing 559/830 atomic regions from SNP 167453 to 168053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,457 DEBUG Processing 558/852 atomic regions from SNP 167286 to 167886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,482 DEBUG Processing 421/1109 atomic regions from SNP 126126 to 126726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,509 DEBUG Processing 469/993 atomic regions from SNP 140434 to 141034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,511 DEBUG Processing 32/219 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:02,624 DEBUG Processing 376/629 atomic regions from SNP 112666 to 113266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,640 DEBUG Processing 560/830 atomic regions from SNP 167753 to 168353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,690 DEBUG Processing 559/852 atomic regions from SNP 167586 to 168186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,742 DEBUG Processing 33/219 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:02,756 DEBUG Processing 422/1109 atomic regions from SNP 126426 to 127026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,803 DEBUG Processing 470/993 atomic regions from SNP 140734 to 141334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,858 DEBUG Processing 377/629 atomic regions from SNP 112966 to 113566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,874 DEBUG Processing 561/830 atomic regions from SNP 168053 to 168653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,929 DEBUG Processing 560/852 atomic regions from SNP 167886 to 168486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,970 DEBUG Processing 34/219 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:03,035 DEBUG Processing 423/1109 atomic regions from SNP 126726 to 127326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,094 DEBUG Processing 378/629 atomic regions from SNP 113266 to 113866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,102 DEBUG Processing 471/993 atomic regions from SNP 141034 to 141634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,104 DEBUG Processing 562/830 atomic regions from SNP 168353 to 168953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,161 DEBUG Processing 561/852 atomic regions from SNP 168186 to 168786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,198 DEBUG Processing 35/219 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:03,313 DEBUG Processing 424/1109 atomic regions from SNP 127026 to 127626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,334 DEBUG Processing 379/629 atomic regions from SNP 113566 to 114166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,336 DEBUG Processing 563/830 atomic regions from SNP 168653 to 169253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,390 DEBUG Processing 472/993 atomic regions from SNP 141334 to 141934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,399 DEBUG Processing 562/852 atomic regions from SNP 168486 to 169086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,425 DEBUG Processing 36/219 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:03,571 DEBUG Processing 380/629 atomic regions from SNP 113866 to 114466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,587 DEBUG Processing 564/830 atomic regions from SNP 168953 to 169553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,590 DEBUG Processing 425/1109 atomic regions from SNP 127326 to 127926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,638 DEBUG Processing 563/852 atomic regions from SNP 168786 to 169386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,655 DEBUG Processing 37/219 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:03,655 DEBUG Processing 473/993 atomic regions from SNP 141634 to 142234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,807 DEBUG Processing 381/629 atomic regions from SNP 114166 to 114766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,844 DEBUG Processing 565/830 atomic regions from SNP 169253 to 169853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,876 DEBUG Processing 426/1109 atomic regions from SNP 127626 to 128226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,892 DEBUG Processing 38/219 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:03,898 DEBUG Processing 564/852 atomic regions from SNP 169086 to 169686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,919 DEBUG Processing 474/993 atomic regions from SNP 141934 to 142534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,037 DEBUG Processing 382/629 atomic regions from SNP 114466 to 115066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,081 DEBUG Processing 566/830 atomic regions from SNP 169553 to 170153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,131 DEBUG Processing 39/219 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:04,156 DEBUG Processing 565/852 atomic regions from SNP 169386 to 169986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,164 DEBUG Processing 427/1109 atomic regions from SNP 127926 to 128526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,181 DEBUG Processing 475/993 atomic regions from SNP 142234 to 142834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,267 DEBUG Processing 383/629 atomic regions from SNP 114766 to 115366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,315 DEBUG Processing 567/830 atomic regions from SNP 169853 to 170453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,366 DEBUG Processing 40/219 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:04,407 DEBUG Processing 566/852 atomic regions from SNP 169686 to 170286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,443 DEBUG Processing 476/993 atomic regions from SNP 142534 to 143134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,449 DEBUG Processing 428/1109 atomic regions from SNP 128226 to 128826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,504 DEBUG Processing 384/629 atomic regions from SNP 115066 to 115666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,548 DEBUG Processing 568/830 atomic regions from SNP 170153 to 170753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,599 DEBUG Processing 41/219 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:04,650 DEBUG Processing 567/852 atomic regions from SNP 169986 to 170586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,704 DEBUG Processing 477/993 atomic regions from SNP 142834 to 143434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,728 DEBUG Processing 429/1109 atomic regions from SNP 128526 to 129126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,742 DEBUG Processing 385/629 atomic regions from SNP 115366 to 115966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,803 DEBUG Processing 569/830 atomic regions from SNP 170453 to 171053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,840 DEBUG Processing 42/219 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:04,908 DEBUG Processing 568/852 atomic regions from SNP 170286 to 170886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,966 DEBUG Processing 478/993 atomic regions from SNP 143134 to 143734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,979 DEBUG Processing 386/629 atomic regions from SNP 115666 to 116266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,010 DEBUG Processing 430/1109 atomic regions from SNP 128826 to 129426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,043 DEBUG Processing 570/830 atomic regions from SNP 170753 to 171353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,074 DEBUG Processing 43/219 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:05,175 DEBUG Processing 569/852 atomic regions from SNP 170586 to 171186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,218 DEBUG Processing 387/629 atomic regions from SNP 115966 to 116566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,237 DEBUG Processing 479/993 atomic regions from SNP 143434 to 144034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,298 DEBUG Processing 431/1109 atomic regions from SNP 129126 to 129726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,298 DEBUG Processing 571/830 atomic regions from SNP 171053 to 171653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,317 DEBUG Processing 44/219 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:05,451 DEBUG Processing 570/852 atomic regions from SNP 170886 to 171486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,454 DEBUG Processing 388/629 atomic regions from SNP 116266 to 116866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,497 DEBUG Processing 480/993 atomic regions from SNP 143734 to 144334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,543 DEBUG Processing 572/830 atomic regions from SNP 171353 to 171953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,559 DEBUG Processing 45/219 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:05,588 DEBUG Processing 432/1109 atomic regions from SNP 129426 to 130026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,687 DEBUG Processing 389/629 atomic regions from SNP 116566 to 117166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,721 DEBUG Processing 571/852 atomic regions from SNP 171186 to 171786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,761 DEBUG Processing 481/993 atomic regions from SNP 144034 to 144634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,787 DEBUG Processing 573/830 atomic regions from SNP 171653 to 172253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,800 DEBUG Processing 46/219 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:05,872 DEBUG Processing 433/1109 atomic regions from SNP 129726 to 130326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,918 DEBUG Processing 390/629 atomic regions from SNP 116866 to 117466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,986 DEBUG Processing 572/852 atomic regions from SNP 171486 to 172086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,022 DEBUG Processing 482/993 atomic regions from SNP 144334 to 144934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,029 DEBUG Processing 574/830 atomic regions from SNP 171953 to 172553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,041 DEBUG Processing 47/219 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:06,149 DEBUG Processing 391/629 atomic regions from SNP 117166 to 117766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,151 DEBUG Processing 434/1109 atomic regions from SNP 130026 to 130626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,247 DEBUG Processing 573/852 atomic regions from SNP 171786 to 172386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,277 DEBUG Processing 575/830 atomic regions from SNP 172253 to 172853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,283 DEBUG Processing 483/993 atomic regions from SNP 144634 to 145234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,287 DEBUG Processing 48/219 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:06,399 DEBUG Processing 392/629 atomic regions from SNP 117466 to 118066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,422 DEBUG Processing 435/1109 atomic regions from SNP 130326 to 130926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,500 DEBUG Processing 574/852 atomic regions from SNP 172086 to 172686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,533 DEBUG Processing 49/219 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:06,542 DEBUG Processing 576/830 atomic regions from SNP 172553 to 173153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,543 DEBUG Processing 484/993 atomic regions from SNP 144934 to 145534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,656 DEBUG Processing 393/629 atomic regions from SNP 117766 to 118366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,691 DEBUG Processing 436/1109 atomic regions from SNP 130626 to 131226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,747 DEBUG Processing 575/852 atomic regions from SNP 172386 to 172986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,772 DEBUG Processing 50/219 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:06,796 DEBUG Processing 577/830 atomic regions from SNP 172853 to 173453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,806 DEBUG Processing 485/993 atomic regions from SNP 145234 to 145834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,885 DEBUG Processing 394/629 atomic regions from SNP 118066 to 118666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,967 DEBUG Processing 437/1109 atomic regions from SNP 130926 to 131526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,983 DEBUG Processing 576/852 atomic regions from SNP 172686 to 173286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,007 DEBUG Processing 51/219 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:07,060 DEBUG Processing 578/830 atomic regions from SNP 173153 to 173753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,072 DEBUG Processing 486/993 atomic regions from SNP 145534 to 146134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,116 DEBUG Processing 395/629 atomic regions from SNP 118366 to 118966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,220 DEBUG Processing 577/852 atomic regions from SNP 172986 to 173586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,247 DEBUG Processing 52/219 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:07,249 DEBUG Processing 438/1109 atomic regions from SNP 131226 to 131826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,313 DEBUG Processing 579/830 atomic regions from SNP 173453 to 174053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,338 DEBUG Processing 487/993 atomic regions from SNP 145834 to 146434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,362 DEBUG Processing 396/629 atomic regions from SNP 118666 to 119266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,455 DEBUG Processing 578/852 atomic regions from SNP 173286 to 173886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,487 DEBUG Processing 53/219 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:07,534 DEBUG Processing 439/1109 atomic regions from SNP 131526 to 132126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,572 DEBUG Processing 580/830 atomic regions from SNP 173753 to 174353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,600 DEBUG Processing 488/993 atomic regions from SNP 146134 to 146734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,610 DEBUG Processing 397/629 atomic regions from SNP 118966 to 119566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,683 DEBUG Processing 579/852 atomic regions from SNP 173586 to 174186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,723 DEBUG Processing 54/219 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:07,814 DEBUG Processing 581/830 atomic regions from SNP 174053 to 174653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,827 DEBUG Processing 440/1109 atomic regions from SNP 131826 to 132426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,866 DEBUG Processing 489/993 atomic regions from SNP 146434 to 147034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,870 DEBUG Processing 398/629 atomic regions from SNP 119266 to 119866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,911 DEBUG Processing 580/852 atomic regions from SNP 173886 to 174486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,957 DEBUG Processing 55/219 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:08,066 DEBUG Processing 582/830 atomic regions from SNP 174353 to 174953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,113 DEBUG Processing 399/629 atomic regions from SNP 119566 to 120166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,125 DEBUG Processing 441/1109 atomic regions from SNP 132126 to 132726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,132 DEBUG Processing 490/993 atomic regions from SNP 146734 to 147334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,141 DEBUG Processing 581/852 atomic regions from SNP 174186 to 174786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,182 DEBUG Processing 56/219 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:08,306 DEBUG Processing 583/830 atomic regions from SNP 174653 to 175253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,367 DEBUG Processing 400/629 atomic regions from SNP 119866 to 120466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,386 DEBUG Processing 582/852 atomic regions from SNP 174486 to 175086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,400 DEBUG Processing 491/993 atomic regions from SNP 147034 to 147634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,422 DEBUG Processing 442/1109 atomic regions from SNP 132426 to 133026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,423 DEBUG Processing 57/219 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:08,532 DEBUG Processing 584/830 atomic regions from SNP 174953 to 175553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,631 DEBUG Processing 583/852 atomic regions from SNP 174786 to 175386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,642 DEBUG Processing 401/629 atomic regions from SNP 120166 to 120766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,670 DEBUG Processing 58/219 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:08,670 DEBUG Processing 492/993 atomic regions from SNP 147334 to 147934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,719 DEBUG Processing 443/1109 atomic regions from SNP 132726 to 133326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,759 DEBUG Processing 585/830 atomic regions from SNP 175253 to 175853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,870 DEBUG Processing 584/852 atomic regions from SNP 175086 to 175686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,914 DEBUG Processing 59/219 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:08,915 DEBUG Processing 402/629 atomic regions from SNP 120466 to 121066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,941 DEBUG Processing 493/993 atomic regions from SNP 147634 to 148234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,001 DEBUG Processing 586/830 atomic regions from SNP 175553 to 176153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,015 DEBUG Processing 444/1109 atomic regions from SNP 133026 to 133626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,102 DEBUG Processing 585/852 atomic regions from SNP 175386 to 175986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,149 DEBUG Processing 60/219 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:09,175 DEBUG Processing 403/629 atomic regions from SNP 120766 to 121366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,211 DEBUG Processing 494/993 atomic regions from SNP 147934 to 148534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,252 DEBUG Processing 587/830 atomic regions from SNP 175853 to 176453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,310 DEBUG Processing 445/1109 atomic regions from SNP 133326 to 133926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,331 DEBUG Processing 586/852 atomic regions from SNP 175686 to 176286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,385 DEBUG Processing 61/219 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:09,445 DEBUG Processing 404/629 atomic regions from SNP 121066 to 121666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,478 DEBUG Processing 495/993 atomic regions from SNP 148234 to 148834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,499 DEBUG Processing 588/830 atomic regions from SNP 176153 to 176753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,563 DEBUG Processing 587/852 atomic regions from SNP 175986 to 176586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,593 DEBUG Processing 446/1109 atomic regions from SNP 133626 to 134226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,612 DEBUG Processing 62/219 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:09,709 DEBUG Processing 405/629 atomic regions from SNP 121366 to 121966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,741 DEBUG Processing 496/993 atomic regions from SNP 148534 to 149134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,757 DEBUG Processing 589/830 atomic regions from SNP 176453 to 177053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,802 DEBUG Processing 588/852 atomic regions from SNP 176286 to 176886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,843 DEBUG Processing 63/219 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:09,871 DEBUG Processing 447/1109 atomic regions from SNP 133926 to 134526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,955 DEBUG Processing 406/629 atomic regions from SNP 121666 to 122266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,003 DEBUG Processing 497/993 atomic regions from SNP 148834 to 149434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,018 DEBUG Processing 590/830 atomic regions from SNP 176753 to 177353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,039 DEBUG Processing 589/852 atomic regions from SNP 176586 to 177186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,069 DEBUG Processing 64/219 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:10,149 DEBUG Processing 448/1109 atomic regions from SNP 134226 to 134826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,198 DEBUG Processing 407/629 atomic regions from SNP 121966 to 122566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,256 DEBUG Processing 591/830 atomic regions from SNP 177053 to 177653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,263 DEBUG Processing 498/993 atomic regions from SNP 149134 to 149734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,271 DEBUG Processing 590/852 atomic regions from SNP 176886 to 177486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,296 DEBUG Processing 65/219 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:10,425 DEBUG Processing 449/1109 atomic regions from SNP 134526 to 135126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,441 DEBUG Processing 408/629 atomic regions from SNP 122266 to 122866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,497 DEBUG Processing 592/830 atomic regions from SNP 177353 to 177953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,508 DEBUG Processing 591/852 atomic regions from SNP 177186 to 177786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,529 DEBUG Processing 499/993 atomic regions from SNP 149434 to 150034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,530 DEBUG Processing 66/219 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:10,703 DEBUG Processing 450/1109 atomic regions from SNP 134826 to 135426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,718 DEBUG Processing 409/629 atomic regions from SNP 122566 to 123166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,751 DEBUG Processing 593/830 atomic regions from SNP 177653 to 178253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,755 DEBUG Processing 592/852 atomic regions from SNP 177486 to 178086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,773 DEBUG Processing 67/219 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:10,811 DEBUG Processing 500/993 atomic regions from SNP 149734 to 150334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,969 DEBUG Processing 410/629 atomic regions from SNP 122866 to 123466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,981 DEBUG Processing 451/1109 atomic regions from SNP 135126 to 135726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,989 DEBUG Processing 594/830 atomic regions from SNP 177953 to 178553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,994 DEBUG Processing 593/852 atomic regions from SNP 177786 to 178386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,011 DEBUG Processing 68/219 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:11,095 DEBUG Processing 501/993 atomic regions from SNP 150034 to 150634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,214 DEBUG Processing 411/629 atomic regions from SNP 123166 to 123766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,228 DEBUG Processing 595/830 atomic regions from SNP 178253 to 178853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,230 DEBUG Processing 594/852 atomic regions from SNP 178086 to 178686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,250 DEBUG Processing 69/219 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:11,264 DEBUG Processing 452/1109 atomic regions from SNP 135426 to 136026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,384 DEBUG Processing 502/993 atomic regions from SNP 150334 to 150934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,460 DEBUG Processing 412/629 atomic regions from SNP 123466 to 124066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,465 DEBUG Processing 595/852 atomic regions from SNP 178386 to 178986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,467 DEBUG Processing 596/830 atomic regions from SNP 178553 to 179153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,490 DEBUG Processing 70/219 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:11,551 DEBUG Processing 453/1109 atomic regions from SNP 135726 to 136326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,660 DEBUG Processing 503/993 atomic regions from SNP 150634 to 151234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,700 DEBUG Processing 597/830 atomic regions from SNP 178853 to 179453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,708 DEBUG Processing 413/629 atomic regions from SNP 123766 to 124366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,708 DEBUG Processing 596/852 atomic regions from SNP 178686 to 179286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,723 DEBUG Processing 71/219 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:11,826 DEBUG Processing 454/1109 atomic regions from SNP 136026 to 136626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,926 DEBUG Processing 504/993 atomic regions from SNP 150934 to 151534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,940 DEBUG Processing 598/830 atomic regions from SNP 179153 to 179753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,949 DEBUG Processing 414/629 atomic regions from SNP 124066 to 124666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,951 DEBUG Processing 597/852 atomic regions from SNP 178986 to 179586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,959 DEBUG Processing 72/219 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:12,101 DEBUG Processing 455/1109 atomic regions from SNP 136326 to 136926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,193 DEBUG Processing 415/629 atomic regions from SNP 124366 to 124966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,197 DEBUG Processing 598/852 atomic regions from SNP 179286 to 179886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,199 DEBUG Processing 599/830 atomic regions from SNP 179453 to 180053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,199 DEBUG Processing 505/993 atomic regions from SNP 151234 to 151834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,205 DEBUG Processing 73/219 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:12,408 DEBUG Processing 456/1109 atomic regions from SNP 136626 to 137226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,443 DEBUG Processing 74/219 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:12,445 DEBUG Processing 599/852 atomic regions from SNP 179586 to 180186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,455 DEBUG Processing 416/629 atomic regions from SNP 124666 to 125266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,462 DEBUG Processing 600/830 atomic regions from SNP 179753 to 180353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,471 DEBUG Processing 506/993 atomic regions from SNP 151534 to 152134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,676 DEBUG Processing 75/219 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:12,687 DEBUG Processing 600/852 atomic regions from SNP 179886 to 180486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,692 DEBUG Processing 457/1109 atomic regions from SNP 136926 to 137526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,731 DEBUG Processing 417/629 atomic regions from SNP 124966 to 125566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,736 DEBUG Processing 601/830 atomic regions from SNP 180053 to 180653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,771 DEBUG Processing 507/993 atomic regions from SNP 151834 to 152434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,909 DEBUG Processing 76/219 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:12,921 DEBUG Processing 601/852 atomic regions from SNP 180186 to 180786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,975 DEBUG Processing 458/1109 atomic regions from SNP 137226 to 137826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,993 DEBUG Processing 418/629 atomic regions from SNP 125266 to 125866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,997 DEBUG Processing 602/830 atomic regions from SNP 180353 to 180953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,062 DEBUG Processing 508/993 atomic regions from SNP 152134 to 152734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,141 DEBUG Processing 77/219 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:13,151 DEBUG Processing 602/852 atomic regions from SNP 180486 to 181086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,240 DEBUG Processing 419/629 atomic regions from SNP 125566 to 126166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,252 DEBUG Processing 459/1109 atomic regions from SNP 137526 to 138126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,255 DEBUG Processing 603/830 atomic regions from SNP 180653 to 181253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,342 DEBUG Processing 509/993 atomic regions from SNP 152434 to 153034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,377 DEBUG Processing 78/219 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:13,388 DEBUG Processing 603/852 atomic regions from SNP 180786 to 181386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,470 DEBUG Processing 420/629 atomic regions from SNP 125866 to 126466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,507 DEBUG Processing 604/830 atomic regions from SNP 180953 to 181553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,530 DEBUG Processing 460/1109 atomic regions from SNP 137826 to 138426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,609 DEBUG Processing 79/219 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:13,630 DEBUG Processing 604/852 atomic regions from SNP 181086 to 181686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,634 DEBUG Processing 510/993 atomic regions from SNP 152734 to 153334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,701 DEBUG Processing 421/629 atomic regions from SNP 126166 to 126766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,770 DEBUG Processing 605/830 atomic regions from SNP 181253 to 181853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,807 DEBUG Processing 461/1109 atomic regions from SNP 138126 to 138726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,839 DEBUG Processing 80/219 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:13,872 DEBUG Processing 605/852 atomic regions from SNP 181386 to 181986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,914 DEBUG Processing 511/993 atomic regions from SNP 153034 to 153634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,939 DEBUG Processing 422/629 atomic regions from SNP 126466 to 127066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,032 DEBUG Processing 606/830 atomic regions from SNP 181553 to 182153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,074 DEBUG Processing 81/219 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:14,090 DEBUG Processing 462/1109 atomic regions from SNP 138426 to 139026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,112 DEBUG Processing 606/852 atomic regions from SNP 181686 to 182286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,182 DEBUG Processing 423/629 atomic regions from SNP 126766 to 127366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,183 DEBUG Processing 512/993 atomic regions from SNP 153334 to 153934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,303 DEBUG Processing 607/830 atomic regions from SNP 181853 to 182453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,312 DEBUG Processing 82/219 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:14,348 DEBUG Processing 607/852 atomic regions from SNP 181986 to 182586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,374 DEBUG Processing 463/1109 atomic regions from SNP 138726 to 139326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,423 DEBUG Processing 424/629 atomic regions from SNP 127066 to 127666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,451 DEBUG Processing 513/993 atomic regions from SNP 153634 to 154234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,548 DEBUG Processing 83/219 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:14,579 DEBUG Processing 608/830 atomic regions from SNP 182153 to 182753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,582 DEBUG Processing 608/852 atomic regions from SNP 182286 to 182886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,659 DEBUG Processing 464/1109 atomic regions from SNP 139026 to 139626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,662 DEBUG Processing 425/629 atomic regions from SNP 127366 to 127966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,717 DEBUG Processing 514/993 atomic regions from SNP 153934 to 154534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,784 DEBUG Processing 84/219 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:14,814 DEBUG Processing 609/852 atomic regions from SNP 182586 to 183186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,851 DEBUG Processing 609/830 atomic regions from SNP 182453 to 183053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,922 DEBUG Processing 426/629 atomic regions from SNP 127666 to 128266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,932 DEBUG Processing 465/1109 atomic regions from SNP 139326 to 139926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,982 DEBUG Processing 515/993 atomic regions from SNP 154234 to 154834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,016 DEBUG Processing 85/219 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:15,058 DEBUG Processing 610/852 atomic regions from SNP 182886 to 183486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,123 DEBUG Processing 610/830 atomic regions from SNP 182753 to 183353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,186 DEBUG Processing 427/629 atomic regions from SNP 127966 to 128566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,210 DEBUG Processing 466/1109 atomic regions from SNP 139626 to 140226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,245 DEBUG Processing 516/993 atomic regions from SNP 154534 to 155134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,250 DEBUG Processing 86/219 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:15,308 DEBUG Processing 611/852 atomic regions from SNP 183186 to 183786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,388 DEBUG Processing 611/830 atomic regions from SNP 183053 to 183653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,434 DEBUG Processing 428/629 atomic regions from SNP 128266 to 128866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,482 DEBUG Processing 467/1109 atomic regions from SNP 139926 to 140526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,485 DEBUG Processing 87/219 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:15,509 DEBUG Processing 517/993 atomic regions from SNP 154834 to 155434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,564 DEBUG Processing 612/852 atomic regions from SNP 183486 to 184086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,620 DEBUG Processing 612/830 atomic regions from SNP 183353 to 183953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,664 DEBUG Processing 429/629 atomic regions from SNP 128566 to 129166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,722 DEBUG Processing 88/219 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:15,773 DEBUG Processing 518/993 atomic regions from SNP 155134 to 155734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,795 DEBUG Processing 468/1109 atomic regions from SNP 140226 to 140826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,805 DEBUG Processing 613/852 atomic regions from SNP 183786 to 184386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,853 DEBUG Processing 613/830 atomic regions from SNP 183653 to 184253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,894 DEBUG Processing 430/629 atomic regions from SNP 128866 to 129466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,947 DEBUG Processing 89/219 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:16,039 DEBUG Processing 519/993 atomic regions from SNP 155434 to 156034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,069 DEBUG Processing 614/852 atomic regions from SNP 184086 to 184686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,092 DEBUG Processing 469/1109 atomic regions from SNP 140526 to 141126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,095 DEBUG Processing 614/830 atomic regions from SNP 183953 to 184553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,125 DEBUG Processing 431/629 atomic regions from SNP 129166 to 129766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,169 DEBUG Processing 90/219 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:16,310 DEBUG Processing 520/993 atomic regions from SNP 155734 to 156334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,348 DEBUG Processing 615/830 atomic regions from SNP 184253 to 184853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,351 DEBUG Processing 615/852 atomic regions from SNP 184386 to 184986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,365 DEBUG Processing 432/629 atomic regions from SNP 129466 to 130066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,393 DEBUG Processing 470/1109 atomic regions from SNP 140826 to 141426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,398 DEBUG Processing 91/219 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:16,578 DEBUG Processing 521/993 atomic regions from SNP 156034 to 156634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,598 DEBUG Processing 616/830 atomic regions from SNP 184553 to 185153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,606 DEBUG Processing 433/629 atomic regions from SNP 129766 to 130366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,620 DEBUG Processing 616/852 atomic regions from SNP 184686 to 185286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,639 DEBUG Processing 92/219 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:16,684 DEBUG Processing 471/1109 atomic regions from SNP 141126 to 141726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,844 DEBUG Processing 617/830 atomic regions from SNP 184853 to 185453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,844 DEBUG Processing 522/993 atomic regions from SNP 156334 to 156934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,846 DEBUG Processing 434/629 atomic regions from SNP 130066 to 130666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,883 DEBUG Processing 93/219 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:16,889 DEBUG Processing 617/852 atomic regions from SNP 184986 to 185586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,966 DEBUG Processing 472/1109 atomic regions from SNP 141426 to 142026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,081 DEBUG Processing 618/830 atomic regions from SNP 185153 to 185753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,093 DEBUG Processing 435/629 atomic regions from SNP 130366 to 130966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,106 DEBUG Processing 523/993 atomic regions from SNP 156634 to 157234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,123 DEBUG Processing 94/219 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:17,127 DEBUG Processing 618/852 atomic regions from SNP 185286 to 185886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,264 DEBUG Processing 473/1109 atomic regions from SNP 141726 to 142326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,321 DEBUG Processing 619/830 atomic regions from SNP 185453 to 186053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,336 DEBUG Processing 436/629 atomic regions from SNP 130666 to 131266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,362 DEBUG Processing 95/219 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:17,365 DEBUG Processing 619/852 atomic regions from SNP 185586 to 186186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,369 DEBUG Processing 524/993 atomic regions from SNP 156934 to 157534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,569 DEBUG Processing 474/1109 atomic regions from SNP 142026 to 142626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,572 DEBUG Processing 437/629 atomic regions from SNP 130966 to 131566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,584 DEBUG Processing 620/830 atomic regions from SNP 185753 to 186353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,601 DEBUG Processing 620/852 atomic regions from SNP 185886 to 186486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,604 DEBUG Processing 96/219 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:17,631 DEBUG Processing 525/993 atomic regions from SNP 157234 to 157834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,811 DEBUG Processing 438/629 atomic regions from SNP 131266 to 131866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,842 DEBUG Processing 621/852 atomic regions from SNP 186186 to 186786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,847 DEBUG Processing 97/219 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:17,855 DEBUG Processing 621/830 atomic regions from SNP 186053 to 186653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,885 DEBUG Processing 475/1109 atomic regions from SNP 142326 to 142926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,894 DEBUG Processing 526/993 atomic regions from SNP 157534 to 158134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,051 DEBUG Processing 439/629 atomic regions from SNP 131566 to 132166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,083 DEBUG Processing 622/852 atomic regions from SNP 186486 to 187086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,104 DEBUG Processing 98/219 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:18,128 DEBUG Processing 622/830 atomic regions from SNP 186353 to 186953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,160 DEBUG Processing 527/993 atomic regions from SNP 157834 to 158434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,211 DEBUG Processing 476/1109 atomic regions from SNP 142626 to 143226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,292 DEBUG Processing 440/629 atomic regions from SNP 131866 to 132466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,317 DEBUG Processing 623/852 atomic regions from SNP 186786 to 187386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,344 DEBUG Processing 99/219 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:18,372 DEBUG Processing 623/830 atomic regions from SNP 186653 to 187253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,426 DEBUG Processing 528/993 atomic regions from SNP 158134 to 158734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,491 DEBUG Processing 477/1109 atomic regions from SNP 142926 to 143526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,538 DEBUG Processing 441/629 atomic regions from SNP 132166 to 132766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,556 DEBUG Processing 624/852 atomic regions from SNP 187086 to 187686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,579 DEBUG Processing 100/219 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:18,612 DEBUG Processing 624/830 atomic regions from SNP 186953 to 187553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,692 DEBUG Processing 529/993 atomic regions from SNP 158434 to 159034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,765 DEBUG Processing 478/1109 atomic regions from SNP 143226 to 143826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,783 DEBUG Processing 442/629 atomic regions from SNP 132466 to 133066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,806 DEBUG Processing 625/852 atomic regions from SNP 187386 to 187986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,815 DEBUG Processing 101/219 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:18,858 DEBUG Processing 625/830 atomic regions from SNP 187253 to 187853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,954 DEBUG Processing 530/993 atomic regions from SNP 158734 to 159334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,012 DEBUG Processing 443/629 atomic regions from SNP 132766 to 133366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,042 DEBUG Processing 626/852 atomic regions from SNP 187686 to 188286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,052 DEBUG Processing 102/219 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:19,059 DEBUG Processing 479/1109 atomic regions from SNP 143526 to 144126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,100 DEBUG Processing 626/830 atomic regions from SNP 187553 to 188153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,216 DEBUG Processing 531/993 atomic regions from SNP 159034 to 159634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,249 DEBUG Processing 444/629 atomic regions from SNP 133066 to 133666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,281 DEBUG Processing 627/852 atomic regions from SNP 187986 to 188586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,291 DEBUG Processing 103/219 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:19,347 DEBUG Processing 627/830 atomic regions from SNP 187853 to 188453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,354 DEBUG Processing 480/1109 atomic regions from SNP 143826 to 144426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,480 DEBUG Processing 532/993 atomic regions from SNP 159334 to 159934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,488 DEBUG Processing 445/629 atomic regions from SNP 133366 to 133966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,523 DEBUG Processing 628/852 atomic regions from SNP 188286 to 188886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,527 DEBUG Processing 104/219 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:19,596 DEBUG Processing 628/830 atomic regions from SNP 188153 to 188753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,644 DEBUG Processing 481/1109 atomic regions from SNP 144126 to 144726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,749 DEBUG Processing 533/993 atomic regions from SNP 159634 to 160234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,750 DEBUG Processing 446/629 atomic regions from SNP 133666 to 134266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,756 DEBUG Processing 105/219 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:19,768 DEBUG Processing 629/852 atomic regions from SNP 188586 to 189186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,852 DEBUG Processing 629/830 atomic regions from SNP 188453 to 189053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,953 DEBUG Processing 482/1109 atomic regions from SNP 144426 to 145026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,982 DEBUG Processing 106/219 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:20,009 DEBUG Processing 447/629 atomic regions from SNP 133966 to 134566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,014 DEBUG Processing 630/852 atomic regions from SNP 188886 to 189486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,014 DEBUG Processing 534/993 atomic regions from SNP 159934 to 160534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,099 DEBUG Processing 630/830 atomic regions from SNP 188753 to 189353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,209 DEBUG Processing 107/219 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:20,239 DEBUG Processing 483/1109 atomic regions from SNP 144726 to 145326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,255 DEBUG Processing 631/852 atomic regions from SNP 189186 to 189786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,262 DEBUG Processing 448/629 atomic regions from SNP 134266 to 134866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,280 DEBUG Processing 535/993 atomic regions from SNP 160234 to 160834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,338 DEBUG Processing 631/830 atomic regions from SNP 189053 to 189653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,434 DEBUG Processing 108/219 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:20,487 DEBUG Processing 632/852 atomic regions from SNP 189486 to 190086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,514 DEBUG Processing 449/629 atomic regions from SNP 134566 to 135166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,518 DEBUG Processing 484/1109 atomic regions from SNP 145026 to 145626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,544 DEBUG Processing 536/993 atomic regions from SNP 160534 to 161134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,580 DEBUG Processing 632/830 atomic regions from SNP 189353 to 189953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,661 DEBUG Processing 109/219 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:20,721 DEBUG Processing 633/852 atomic regions from SNP 189786 to 190386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,746 DEBUG Processing 450/629 atomic regions from SNP 134866 to 135466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,800 DEBUG Processing 485/1109 atomic regions from SNP 145326 to 145926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,807 DEBUG Processing 537/993 atomic regions from SNP 160834 to 161434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,824 DEBUG Processing 633/830 atomic regions from SNP 189653 to 190253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,891 DEBUG Processing 110/219 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:20,958 DEBUG Processing 634/852 atomic regions from SNP 190086 to 190686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,980 DEBUG Processing 451/629 atomic regions from SNP 135166 to 135766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,066 DEBUG Processing 538/993 atomic regions from SNP 161134 to 161734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,067 DEBUG Processing 634/830 atomic regions from SNP 189953 to 190553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,103 DEBUG Processing 486/1109 atomic regions from SNP 145626 to 146226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,132 DEBUG Processing 111/219 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:21,203 DEBUG Processing 635/852 atomic regions from SNP 190386 to 190986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,220 DEBUG Processing 452/629 atomic regions from SNP 135466 to 136066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,311 DEBUG Processing 635/830 atomic regions from SNP 190253 to 190853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,323 DEBUG Processing 539/993 atomic regions from SNP 161434 to 162034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,385 DEBUG Processing 112/219 atomic regions from SNP 33411 to 34012 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:21,398 DEBUG Processing 487/1109 atomic regions from SNP 145926 to 146526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,445 DEBUG Processing 636/852 atomic regions from SNP 190686 to 191286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,463 DEBUG Processing 453/629 atomic regions from SNP 135766 to 136366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,546 DEBUG Processing 636/830 atomic regions from SNP 190553 to 191153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,581 DEBUG Processing 540/993 atomic regions from SNP 161734 to 162334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,634 DEBUG Processing 113/219 atomic regions from SNP 33712 to 34313 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:21,685 DEBUG Processing 637/852 atomic regions from SNP 190986 to 191586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,687 DEBUG Processing 488/1109 atomic regions from SNP 146226 to 146826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,707 DEBUG Processing 454/629 atomic regions from SNP 136066 to 136666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,777 DEBUG Processing 637/830 atomic regions from SNP 190853 to 191453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,838 DEBUG Processing 541/993 atomic regions from SNP 162034 to 162634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,875 DEBUG Processing 114/219 atomic regions from SNP 34013 to 34614 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:21,920 DEBUG Processing 638/852 atomic regions from SNP 191286 to 191886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,969 DEBUG Processing 455/629 atomic regions from SNP 136366 to 136966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,970 DEBUG Processing 489/1109 atomic regions from SNP 146526 to 147126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,011 DEBUG Processing 638/830 atomic regions from SNP 191153 to 191753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,102 DEBUG Processing 542/993 atomic regions from SNP 162334 to 162934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,109 DEBUG Processing 115/219 atomic regions from SNP 34314 to 34915 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:22,155 DEBUG Processing 639/852 atomic regions from SNP 191586 to 192186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,227 DEBUG Processing 456/629 atomic regions from SNP 136666 to 137266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,254 DEBUG Processing 490/1109 atomic regions from SNP 146826 to 147426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,266 DEBUG Processing 639/830 atomic regions from SNP 191453 to 192053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,337 DEBUG Processing 116/219 atomic regions from SNP 34615 to 35216 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:22,368 DEBUG Processing 543/993 atomic regions from SNP 162634 to 163234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,393 DEBUG Processing 640/852 atomic regions from SNP 191886 to 192486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,459 DEBUG Processing 457/629 atomic regions from SNP 136966 to 137566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,517 DEBUG Processing 640/830 atomic regions from SNP 191753 to 192353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,539 DEBUG Processing 491/1109 atomic regions from SNP 147126 to 147726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,568 DEBUG Processing 117/219 atomic regions from SNP 34916 to 35517 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:22,631 DEBUG Processing 544/993 atomic regions from SNP 162934 to 163534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,634 DEBUG Processing 641/852 atomic regions from SNP 192186 to 192786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,694 DEBUG Processing 458/629 atomic regions from SNP 137266 to 137866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,767 DEBUG Processing 641/830 atomic regions from SNP 192053 to 192653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,805 DEBUG Processing 118/219 atomic regions from SNP 35217 to 35818 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:22,822 DEBUG Processing 492/1109 atomic regions from SNP 147426 to 148026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,888 DEBUG Processing 642/852 atomic regions from SNP 192486 to 193086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,901 DEBUG Processing 545/993 atomic regions from SNP 163234 to 163834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,930 DEBUG Processing 459/629 atomic regions from SNP 137566 to 138166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,039 DEBUG Processing 119/219 atomic regions from SNP 35518 to 36119 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:23,047 DEBUG Processing 642/830 atomic regions from SNP 192353 to 192953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,108 DEBUG Processing 493/1109 atomic regions from SNP 147726 to 148326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,157 DEBUG Processing 643/852 atomic regions from SNP 192786 to 193386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,170 DEBUG Processing 460/629 atomic regions from SNP 137866 to 138466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,170 DEBUG Processing 546/993 atomic regions from SNP 163534 to 164134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,268 DEBUG Processing 120/219 atomic regions from SNP 35819 to 36420 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:23,308 DEBUG Processing 643/830 atomic regions from SNP 192653 to 193253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,386 DEBUG Processing 494/1109 atomic regions from SNP 148026 to 148626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,403 DEBUG Processing 644/852 atomic regions from SNP 193086 to 193686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,431 DEBUG Processing 461/629 atomic regions from SNP 138166 to 138766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,441 DEBUG Processing 547/993 atomic regions from SNP 163834 to 164434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,495 DEBUG Processing 121/219 atomic regions from SNP 36120 to 36721 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:23,542 DEBUG Processing 644/830 atomic regions from SNP 192953 to 193553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,648 DEBUG Processing 645/852 atomic regions from SNP 193386 to 193986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,666 DEBUG Processing 495/1109 atomic regions from SNP 148326 to 148926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,672 DEBUG Processing 462/629 atomic regions from SNP 138466 to 139066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,708 DEBUG Processing 548/993 atomic regions from SNP 164134 to 164734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,734 DEBUG Processing 122/219 atomic regions from SNP 36421 to 37022 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:23,775 DEBUG Processing 645/830 atomic regions from SNP 193253 to 193853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,905 DEBUG Processing 646/852 atomic regions from SNP 193686 to 194286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,919 DEBUG Processing 463/629 atomic regions from SNP 138766 to 139366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,952 DEBUG Processing 496/1109 atomic regions from SNP 148626 to 149226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,971 DEBUG Processing 123/219 atomic regions from SNP 36722 to 37323 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:23,982 DEBUG Processing 549/993 atomic regions from SNP 164434 to 165034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,043 DEBUG Processing 646/830 atomic regions from SNP 193553 to 194153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,146 DEBUG Processing 647/852 atomic regions from SNP 193986 to 194586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,158 DEBUG Processing 464/629 atomic regions from SNP 139066 to 139666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,216 DEBUG Processing 124/219 atomic regions from SNP 37023 to 37624 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:24,234 DEBUG Processing 497/1109 atomic regions from SNP 148926 to 149526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,247 DEBUG Processing 550/993 atomic regions from SNP 164734 to 165334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,303 DEBUG Processing 647/830 atomic regions from SNP 193853 to 194453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,392 DEBUG Processing 648/852 atomic regions from SNP 194286 to 194886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,394 DEBUG Processing 465/629 atomic regions from SNP 139366 to 139966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,466 DEBUG Processing 125/219 atomic regions from SNP 37324 to 37925 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:24,516 DEBUG Processing 551/993 atomic regions from SNP 165034 to 165634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,541 DEBUG Processing 498/1109 atomic regions from SNP 149226 to 149826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,566 DEBUG Processing 648/830 atomic regions from SNP 194153 to 194753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,625 DEBUG Processing 466/629 atomic regions from SNP 139666 to 140266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,662 DEBUG Processing 649/852 atomic regions from SNP 194586 to 195186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,702 DEBUG Processing 126/219 atomic regions from SNP 37625 to 38226 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:24,778 DEBUG Processing 552/993 atomic regions from SNP 165334 to 165934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,826 DEBUG Processing 649/830 atomic regions from SNP 194453 to 195053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,836 DEBUG Processing 499/1109 atomic regions from SNP 149526 to 150126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,858 DEBUG Processing 467/629 atomic regions from SNP 139966 to 140566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,923 DEBUG Processing 650/852 atomic regions from SNP 194886 to 195486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,934 DEBUG Processing 127/219 atomic regions from SNP 37926 to 38527 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:25,038 DEBUG Processing 553/993 atomic regions from SNP 165634 to 166234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,080 DEBUG Processing 650/830 atomic regions from SNP 194753 to 195353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,085 DEBUG Processing 468/629 atomic regions from SNP 140266 to 140866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,111 DEBUG Processing 500/1109 atomic regions from SNP 149826 to 150426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,163 DEBUG Processing 651/852 atomic regions from SNP 195186 to 195786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,173 DEBUG Processing 128/219 atomic regions from SNP 38227 to 38828 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:25,300 DEBUG Processing 554/993 atomic regions from SNP 165934 to 166534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,314 DEBUG Processing 469/629 atomic regions from SNP 140566 to 141166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,320 DEBUG Processing 651/830 atomic regions from SNP 195053 to 195653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,387 DEBUG Processing 501/1109 atomic regions from SNP 150126 to 150726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,400 DEBUG Processing 652/852 atomic regions from SNP 195486 to 196086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,411 DEBUG Processing 129/219 atomic regions from SNP 38528 to 39129 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:25,549 DEBUG Processing 470/629 atomic regions from SNP 140866 to 141466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,563 DEBUG Processing 555/993 atomic regions from SNP 166234 to 166834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,577 DEBUG Processing 652/830 atomic regions from SNP 195353 to 195953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,633 DEBUG Processing 653/852 atomic regions from SNP 195786 to 196386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,641 DEBUG Processing 130/219 atomic regions from SNP 38829 to 39430 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:25,660 DEBUG Processing 502/1109 atomic regions from SNP 150426 to 151026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,789 DEBUG Processing 471/629 atomic regions from SNP 141166 to 141766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,826 DEBUG Processing 556/993 atomic regions from SNP 166534 to 167134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,837 DEBUG Processing 653/830 atomic regions from SNP 195653 to 196253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,866 DEBUG Processing 131/219 atomic regions from SNP 39130 to 39731 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:25,873 DEBUG Processing 654/852 atomic regions from SNP 196086 to 196686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,930 DEBUG Processing 503/1109 atomic regions from SNP 150726 to 151326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,032 DEBUG Processing 472/629 atomic regions from SNP 141466 to 142066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,092 DEBUG Processing 557/993 atomic regions from SNP 166834 to 167434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,095 DEBUG Processing 132/219 atomic regions from SNP 39431 to 40032 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:26,098 DEBUG Processing 654/830 atomic regions from SNP 195953 to 196553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,117 DEBUG Processing 655/852 atomic regions from SNP 196386 to 196986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,211 DEBUG Processing 504/1109 atomic regions from SNP 151026 to 151626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,284 DEBUG Processing 473/629 atomic regions from SNP 141766 to 142366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,332 DEBUG Processing 133/219 atomic regions from SNP 39732 to 40333 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:26,357 DEBUG Processing 558/993 atomic regions from SNP 167134 to 167734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,360 DEBUG Processing 655/830 atomic regions from SNP 196253 to 196853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,370 DEBUG Processing 656/852 atomic regions from SNP 196686 to 197286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,518 DEBUG Processing 505/1109 atomic regions from SNP 151326 to 151926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,538 DEBUG Processing 474/629 atomic regions from SNP 142066 to 142666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,574 DEBUG Processing 134/219 atomic regions from SNP 40033 to 40634 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:26,611 DEBUG Processing 657/852 atomic regions from SNP 196986 to 197586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,621 DEBUG Processing 656/830 atomic regions from SNP 196553 to 197153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,624 DEBUG Processing 559/993 atomic regions from SNP 167434 to 168034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,796 DEBUG Processing 475/629 atomic regions from SNP 142366 to 142966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,817 DEBUG Processing 135/219 atomic regions from SNP 40334 to 40935 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:26,826 DEBUG Processing 506/1109 atomic regions from SNP 151626 to 152226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,853 DEBUG Processing 658/852 atomic regions from SNP 197286 to 197886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,884 DEBUG Processing 657/830 atomic regions from SNP 196853 to 197453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,890 DEBUG Processing 560/993 atomic regions from SNP 167734 to 168334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,051 DEBUG Processing 136/219 atomic regions from SNP 40635 to 41236 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:27,056 DEBUG Processing 476/629 atomic regions from SNP 142666 to 143266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,095 DEBUG Processing 659/852 atomic regions from SNP 197586 to 198186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,126 DEBUG Processing 507/1109 atomic regions from SNP 151926 to 152526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,155 DEBUG Processing 658/830 atomic regions from SNP 197153 to 197753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,157 DEBUG Processing 561/993 atomic regions from SNP 168034 to 168634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,279 DEBUG Processing 137/219 atomic regions from SNP 40936 to 41537 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:27,326 DEBUG Processing 477/629 atomic regions from SNP 142966 to 143566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,336 DEBUG Processing 660/852 atomic regions from SNP 197886 to 198486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,407 DEBUG Processing 508/1109 atomic regions from SNP 152226 to 152826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,424 DEBUG Processing 659/830 atomic regions from SNP 197453 to 198053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,425 DEBUG Processing 562/993 atomic regions from SNP 168334 to 168934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,513 DEBUG Processing 138/219 atomic regions from SNP 41237 to 41838 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:27,573 DEBUG Processing 661/852 atomic regions from SNP 198186 to 198786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,576 DEBUG Processing 478/629 atomic regions from SNP 143266 to 143866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,682 DEBUG Processing 660/830 atomic regions from SNP 197753 to 198353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,687 DEBUG Processing 563/993 atomic regions from SNP 168634 to 169234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,697 DEBUG Processing 509/1109 atomic regions from SNP 152526 to 153126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,750 DEBUG Processing 139/219 atomic regions from SNP 41538 to 42139 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:27,808 DEBUG Processing 662/852 atomic regions from SNP 198486 to 199086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,814 DEBUG Processing 479/629 atomic regions from SNP 143566 to 144166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,935 DEBUG Processing 661/830 atomic regions from SNP 198053 to 198653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,949 DEBUG Processing 564/993 atomic regions from SNP 168934 to 169534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,994 DEBUG Processing 140/219 atomic regions from SNP 41839 to 42440 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:28,008 DEBUG Processing 510/1109 atomic regions from SNP 152826 to 153426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,046 DEBUG Processing 663/852 atomic regions from SNP 198786 to 199386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,058 DEBUG Processing 480/629 atomic regions from SNP 143866 to 144466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,181 DEBUG Processing 662/830 atomic regions from SNP 198353 to 198953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,211 DEBUG Processing 565/993 atomic regions from SNP 169234 to 169834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,248 DEBUG Processing 141/219 atomic regions from SNP 42140 to 42741 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:28,286 DEBUG Processing 664/852 atomic regions from SNP 199086 to 199686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,298 DEBUG Processing 481/629 atomic regions from SNP 144166 to 144766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,317 DEBUG Processing 511/1109 atomic regions from SNP 153126 to 153726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,428 DEBUG Processing 663/830 atomic regions from SNP 198653 to 199253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,470 DEBUG Processing 566/993 atomic regions from SNP 169534 to 170134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,492 DEBUG Processing 142/219 atomic regions from SNP 42441 to 43042 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:28,525 DEBUG Processing 665/852 atomic regions from SNP 199386 to 199986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,539 DEBUG Processing 482/629 atomic regions from SNP 144466 to 145066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,601 DEBUG Processing 512/1109 atomic regions from SNP 153426 to 154026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,696 DEBUG Processing 664/830 atomic regions from SNP 198953 to 199553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,733 DEBUG Processing 143/219 atomic regions from SNP 42742 to 43343 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:28,733 DEBUG Processing 567/993 atomic regions from SNP 169834 to 170434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,763 DEBUG Processing 666/852 atomic regions from SNP 199686 to 200286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,778 DEBUG Processing 483/629 atomic regions from SNP 144766 to 145366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,890 DEBUG Processing 513/1109 atomic regions from SNP 153726 to 154326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,966 DEBUG Processing 665/830 atomic regions from SNP 199253 to 199853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,976 DEBUG Processing 144/219 atomic regions from SNP 43043 to 43644 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:28,999 DEBUG Processing 667/852 atomic regions from SNP 199986 to 200586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,009 DEBUG Processing 568/993 atomic regions from SNP 170134 to 170734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,016 DEBUG Processing 484/629 atomic regions from SNP 145066 to 145666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,182 DEBUG Processing 514/1109 atomic regions from SNP 154026 to 154626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,219 DEBUG Processing 145/219 atomic regions from SNP 43344 to 43945 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:29,235 DEBUG Processing 666/830 atomic regions from SNP 199553 to 200153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,241 DEBUG Processing 668/852 atomic regions from SNP 200286 to 200886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,257 DEBUG Processing 485/629 atomic regions from SNP 145366 to 145966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,292 DEBUG Processing 569/993 atomic regions from SNP 170434 to 171034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,465 DEBUG Processing 146/219 atomic regions from SNP 43645 to 44246 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:29,489 DEBUG Processing 669/852 atomic regions from SNP 200586 to 201186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,492 DEBUG Processing 515/1109 atomic regions from SNP 154326 to 154926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,503 DEBUG Processing 486/629 atomic regions from SNP 145666 to 146266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,515 DEBUG Processing 667/830 atomic regions from SNP 199853 to 200453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,578 DEBUG Processing 570/993 atomic regions from SNP 170734 to 171334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,701 DEBUG Processing 147/219 atomic regions from SNP 43946 to 44547 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:29,732 DEBUG Processing 670/852 atomic regions from SNP 200886 to 201486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,741 DEBUG Processing 487/629 atomic regions from SNP 145966 to 146566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,778 DEBUG Processing 668/830 atomic regions from SNP 200153 to 200753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,795 DEBUG Processing 516/1109 atomic regions from SNP 154626 to 155226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,871 DEBUG Processing 571/993 atomic regions from SNP 171034 to 171634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,928 DEBUG Processing 148/219 atomic regions from SNP 44247 to 44848 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:29,973 DEBUG Processing 671/852 atomic regions from SNP 201186 to 201786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,981 DEBUG Processing 488/629 atomic regions from SNP 146266 to 146866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,037 DEBUG Processing 669/830 atomic regions from SNP 200453 to 201053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,100 DEBUG Processing 517/1109 atomic regions from SNP 154926 to 155526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,138 DEBUG Processing 572/993 atomic regions from SNP 171334 to 171934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,167 DEBUG Processing 149/219 atomic regions from SNP 44548 to 45149 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:30,211 DEBUG Processing 672/852 atomic regions from SNP 201486 to 202086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,224 DEBUG Processing 489/629 atomic regions from SNP 146566 to 147166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,278 DEBUG Processing 670/830 atomic regions from SNP 200753 to 201353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,401 DEBUG Processing 573/993 atomic regions from SNP 171634 to 172234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,410 DEBUG Processing 518/1109 atomic regions from SNP 155226 to 155826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,413 DEBUG Processing 150/219 atomic regions from SNP 44849 to 45450 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:30,450 DEBUG Processing 673/852 atomic regions from SNP 201786 to 202386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,491 DEBUG Processing 490/629 atomic regions from SNP 146866 to 147466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,533 DEBUG Processing 671/830 atomic regions from SNP 201053 to 201653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,652 DEBUG Processing 151/219 atomic regions from SNP 45150 to 45751 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:30,664 DEBUG Processing 574/993 atomic regions from SNP 171934 to 172534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,687 DEBUG Processing 674/852 atomic regions from SNP 202086 to 202686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,722 DEBUG Processing 519/1109 atomic regions from SNP 155526 to 156126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,747 DEBUG Processing 491/629 atomic regions from SNP 147166 to 147766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,806 DEBUG Processing 672/830 atomic regions from SNP 201353 to 201953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,895 DEBUG Processing 152/219 atomic regions from SNP 45451 to 46052 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:30,924 DEBUG Processing 675/852 atomic regions from SNP 202386 to 202986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,927 DEBUG Processing 575/993 atomic regions from SNP 172234 to 172834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,011 DEBUG Processing 492/629 atomic regions from SNP 147466 to 148066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,043 DEBUG Processing 520/1109 atomic regions from SNP 155826 to 156426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,071 DEBUG Processing 673/830 atomic regions from SNP 201653 to 202253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,134 DEBUG Processing 153/219 atomic regions from SNP 45752 to 46353 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:31,168 DEBUG Processing 676/852 atomic regions from SNP 202686 to 203286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,197 DEBUG Processing 576/993 atomic regions from SNP 172534 to 173134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,278 DEBUG Processing 493/629 atomic regions from SNP 147766 to 148366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,317 DEBUG Processing 674/830 atomic regions from SNP 201953 to 202553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,357 DEBUG Processing 521/1109 atomic regions from SNP 156126 to 156726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,425 DEBUG Processing 154/219 atomic regions from SNP 46053 to 46654 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:31,450 DEBUG Processing 677/852 atomic regions from SNP 202986 to 203586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,484 DEBUG Processing 577/993 atomic regions from SNP 172834 to 173434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,548 DEBUG Processing 494/629 atomic regions from SNP 148066 to 148666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,552 DEBUG Processing 675/830 atomic regions from SNP 202253 to 202853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,642 DEBUG Processing 522/1109 atomic regions from SNP 156426 to 157026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,698 DEBUG Processing 155/219 atomic regions from SNP 46354 to 46955 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:31,736 DEBUG Processing 678/852 atomic regions from SNP 203286 to 203886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,792 DEBUG Processing 578/993 atomic regions from SNP 173134 to 173734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,811 DEBUG Processing 676/830 atomic regions from SNP 202553 to 203153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,832 DEBUG Processing 495/629 atomic regions from SNP 148366 to 148966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,925 DEBUG Processing 523/1109 atomic regions from SNP 156726 to 157326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,937 DEBUG Processing 156/219 atomic regions from SNP 46655 to 47256 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:31,992 DEBUG Processing 679/852 atomic regions from SNP 203586 to 204186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,073 DEBUG Processing 677/830 atomic regions from SNP 202853 to 203453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,092 DEBUG Processing 579/993 atomic regions from SNP 173434 to 174034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,107 DEBUG Processing 496/629 atomic regions from SNP 148666 to 149266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,184 DEBUG Processing 157/219 atomic regions from SNP 46956 to 47557 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:32,219 DEBUG Processing 524/1109 atomic regions from SNP 157026 to 157626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,252 DEBUG Processing 680/852 atomic regions from SNP 203886 to 204486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,302 DEBUG Processing 678/830 atomic regions from SNP 203153 to 203753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,351 DEBUG Processing 580/993 atomic regions from SNP 173734 to 174334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,364 DEBUG Processing 497/629 atomic regions from SNP 148966 to 149566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,426 DEBUG Processing 158/219 atomic regions from SNP 47257 to 47858 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:32,507 DEBUG Processing 525/1109 atomic regions from SNP 157326 to 157926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,516 DEBUG Processing 681/852 atomic regions from SNP 204186 to 204786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,540 DEBUG Processing 679/830 atomic regions from SNP 203453 to 204053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,611 DEBUG Processing 581/993 atomic regions from SNP 174034 to 174634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,621 DEBUG Processing 498/629 atomic regions from SNP 149266 to 149866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,663 DEBUG Processing 159/219 atomic regions from SNP 47558 to 48159 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:32,778 DEBUG Processing 682/852 atomic regions from SNP 204486 to 205086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,782 DEBUG Processing 680/830 atomic regions from SNP 203753 to 204353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,791 DEBUG Processing 526/1109 atomic regions from SNP 157626 to 158226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,868 DEBUG Processing 582/993 atomic regions from SNP 174334 to 174934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,880 DEBUG Processing 499/629 atomic regions from SNP 149566 to 150166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,898 DEBUG Processing 160/219 atomic regions from SNP 47859 to 48460 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:33,023 DEBUG Processing 681/830 atomic regions from SNP 204053 to 204653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,032 DEBUG Processing 683/852 atomic regions from SNP 204786 to 205386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,074 DEBUG Processing 527/1109 atomic regions from SNP 157926 to 158526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,124 DEBUG Processing 583/993 atomic regions from SNP 174634 to 175234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,134 DEBUG Processing 161/219 atomic regions from SNP 48160 to 48761 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:33,142 DEBUG Processing 500/629 atomic regions from SNP 149866 to 150466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,265 DEBUG Processing 682/830 atomic regions from SNP 204353 to 204953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,279 DEBUG Processing 684/852 atomic regions from SNP 205086 to 205686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,356 DEBUG Processing 528/1109 atomic regions from SNP 158226 to 158826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,377 DEBUG Processing 162/219 atomic regions from SNP 48461 to 49062 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:33,386 DEBUG Processing 584/993 atomic regions from SNP 174934 to 175534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,403 DEBUG Processing 501/629 atomic regions from SNP 150166 to 150766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,516 DEBUG Processing 683/830 atomic regions from SNP 204653 to 205253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,531 DEBUG Processing 685/852 atomic regions from SNP 205386 to 205986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,614 DEBUG Processing 163/219 atomic regions from SNP 48762 to 49363 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:33,639 DEBUG Processing 529/1109 atomic regions from SNP 158526 to 159126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,654 DEBUG Processing 585/993 atomic regions from SNP 175234 to 175834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,672 DEBUG Processing 502/629 atomic regions from SNP 150466 to 151066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,795 DEBUG Processing 684/830 atomic regions from SNP 204953 to 205553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,826 DEBUG Processing 686/852 atomic regions from SNP 205686 to 206286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,876 DEBUG Processing 164/219 atomic regions from SNP 49063 to 49664 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:33,930 DEBUG Processing 586/993 atomic regions from SNP 175534 to 176134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,939 DEBUG Processing 503/629 atomic regions from SNP 150766 to 151366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,940 DEBUG Processing 530/1109 atomic regions from SNP 158826 to 159426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,029 DEBUG Processing 685/830 atomic regions from SNP 205253 to 205853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,067 DEBUG Processing 687/852 atomic regions from SNP 205986 to 206586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,154 DEBUG Processing 165/219 atomic regions from SNP 49364 to 49965 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:34,223 DEBUG Processing 504/629 atomic regions from SNP 151066 to 151666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,228 DEBUG Processing 587/993 atomic regions from SNP 175834 to 176434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,262 DEBUG Processing 531/1109 atomic regions from SNP 159126 to 159726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,280 DEBUG Processing 686/830 atomic regions from SNP 205553 to 206153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,303 DEBUG Processing 688/852 atomic regions from SNP 206286 to 206886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,385 DEBUG Processing 166/219 atomic regions from SNP 49665 to 50266 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:34,487 DEBUG Processing 505/629 atomic regions from SNP 151366 to 151966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,497 DEBUG Processing 588/993 atomic regions from SNP 176134 to 176734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,527 DEBUG Processing 687/830 atomic regions from SNP 205853 to 206453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,542 DEBUG Processing 689/852 atomic regions from SNP 206586 to 207186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,553 DEBUG Processing 532/1109 atomic regions from SNP 159426 to 160026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,623 DEBUG Processing 167/219 atomic regions from SNP 49966 to 50567 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:34,753 DEBUG Processing 506/629 atomic regions from SNP 151666 to 152266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,760 DEBUG Processing 589/993 atomic regions from SNP 176434 to 177034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,771 DEBUG Processing 688/830 atomic regions from SNP 206153 to 206753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,789 DEBUG Processing 690/852 atomic regions from SNP 206886 to 207486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,844 DEBUG Processing 533/1109 atomic regions from SNP 159726 to 160326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,872 DEBUG Processing 168/219 atomic regions from SNP 50267 to 50868 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:35,005 DEBUG Processing 689/830 atomic regions from SNP 206453 to 207053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,030 DEBUG Processing 507/629 atomic regions from SNP 151966 to 152566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,031 DEBUG Processing 590/993 atomic regions from SNP 176734 to 177334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,048 DEBUG Processing 691/852 atomic regions from SNP 207186 to 207786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,144 DEBUG Processing 169/219 atomic regions from SNP 50568 to 51169 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:35,160 DEBUG Processing 534/1109 atomic regions from SNP 160026 to 160626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,238 DEBUG Processing 690/830 atomic regions from SNP 206753 to 207353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,290 DEBUG Processing 591/993 atomic regions from SNP 177034 to 177634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,294 DEBUG Processing 692/852 atomic regions from SNP 207486 to 208086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,295 DEBUG Processing 508/629 atomic regions from SNP 152266 to 152866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,391 DEBUG Processing 170/219 atomic regions from SNP 50869 to 51470 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:35,458 DEBUG Processing 535/1109 atomic regions from SNP 160326 to 160926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,480 DEBUG Processing 691/830 atomic regions from SNP 207053 to 207653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,553 DEBUG Processing 592/993 atomic regions from SNP 177334 to 177934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,555 DEBUG Processing 693/852 atomic regions from SNP 207786 to 208386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,572 DEBUG Processing 509/629 atomic regions from SNP 152566 to 153166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,629 DEBUG Processing 171/219 atomic regions from SNP 51170 to 51771 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:35,723 DEBUG Processing 692/830 atomic regions from SNP 207353 to 207953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,744 DEBUG Processing 536/1109 atomic regions from SNP 160626 to 161226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,815 DEBUG Processing 593/993 atomic regions from SNP 177634 to 178234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,821 DEBUG Processing 694/852 atomic regions from SNP 208086 to 208686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,838 DEBUG Processing 510/629 atomic regions from SNP 152866 to 153466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,865 DEBUG Processing 172/219 atomic regions from SNP 51471 to 52072 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:35,966 DEBUG Processing 693/830 atomic regions from SNP 207653 to 208253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,027 DEBUG Processing 537/1109 atomic regions from SNP 160926 to 161526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,100 DEBUG Processing 594/993 atomic regions from SNP 177934 to 178534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,103 DEBUG Processing 695/852 atomic regions from SNP 208386 to 208986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,104 DEBUG Processing 511/629 atomic regions from SNP 153166 to 153766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,118 DEBUG Processing 173/219 atomic regions from SNP 51772 to 52373 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:36,241 DEBUG Processing 694/830 atomic regions from SNP 207953 to 208553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,323 DEBUG Processing 538/1109 atomic regions from SNP 161226 to 161826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,361 DEBUG Processing 696/852 atomic regions from SNP 208686 to 209286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,366 DEBUG Processing 174/219 atomic regions from SNP 52073 to 52674 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:36,377 DEBUG Processing 595/993 atomic regions from SNP 178234 to 178834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,382 DEBUG Processing 512/629 atomic regions from SNP 153466 to 154066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,482 DEBUG Processing 695/830 atomic regions from SNP 208253 to 208853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,638 DEBUG Processing 697/852 atomic regions from SNP 208986 to 209586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,642 DEBUG Processing 539/1109 atomic regions from SNP 161526 to 162126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,653 DEBUG Processing 175/219 atomic regions from SNP 52374 to 52975 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:36,684 DEBUG Processing 596/993 atomic regions from SNP 178534 to 179134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,689 DEBUG Processing 513/629 atomic regions from SNP 153766 to 154366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,745 DEBUG Processing 696/830 atomic regions from SNP 208553 to 209153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,914 DEBUG Processing 698/852 atomic regions from SNP 209286 to 209886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,926 DEBUG Processing 176/219 atomic regions from SNP 52675 to 53276 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:36,967 DEBUG Processing 540/1109 atomic regions from SNP 161826 to 162426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,970 DEBUG Processing 597/993 atomic regions from SNP 178834 to 179434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,971 DEBUG Processing 514/629 atomic regions from SNP 154066 to 154666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,003 DEBUG Processing 697/830 atomic regions from SNP 208853 to 209453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,161 DEBUG Processing 699/852 atomic regions from SNP 209586 to 210186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,171 DEBUG Processing 177/219 atomic regions from SNP 52976 to 53577 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:37,246 DEBUG Processing 515/629 atomic regions from SNP 154366 to 154966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,247 DEBUG Processing 598/993 atomic regions from SNP 179134 to 179734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,260 DEBUG Processing 698/830 atomic regions from SNP 209153 to 209753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,278 DEBUG Processing 541/1109 atomic regions from SNP 162126 to 162726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,431 DEBUG Processing 178/219 atomic regions from SNP 53277 to 53878 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:37,454 DEBUG Processing 700/852 atomic regions from SNP 209886 to 210486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,538 DEBUG Processing 599/993 atomic regions from SNP 179434 to 180034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,544 DEBUG Processing 516/629 atomic regions from SNP 154666 to 155266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,548 DEBUG Processing 699/830 atomic regions from SNP 209453 to 210053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,593 DEBUG Processing 542/1109 atomic regions from SNP 162426 to 163026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,675 DEBUG Processing 179/219 atomic regions from SNP 53578 to 54179 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:37,698 DEBUG Processing 701/852 atomic regions from SNP 210186 to 210786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,799 DEBUG Processing 600/993 atomic regions from SNP 179734 to 180334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,804 DEBUG Processing 517/629 atomic regions from SNP 154966 to 155566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,819 DEBUG Processing 700/830 atomic regions from SNP 209753 to 210353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,874 DEBUG Processing 543/1109 atomic regions from SNP 162726 to 163326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,926 DEBUG Processing 180/219 atomic regions from SNP 53879 to 54480 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:37,934 DEBUG Processing 702/852 atomic regions from SNP 210486 to 211086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,064 DEBUG Processing 601/993 atomic regions from SNP 180034 to 180634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,073 DEBUG Processing 518/629 atomic regions from SNP 155266 to 155866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,085 DEBUG Processing 701/830 atomic regions from SNP 210053 to 210653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,156 DEBUG Processing 544/1109 atomic regions from SNP 163026 to 163626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,168 DEBUG Processing 703/852 atomic regions from SNP 210786 to 211386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,177 DEBUG Processing 181/219 atomic regions from SNP 54180 to 54781 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:38,327 DEBUG Processing 602/993 atomic regions from SNP 180334 to 180934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,327 DEBUG Processing 519/629 atomic regions from SNP 155566 to 156166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,359 DEBUG Processing 702/830 atomic regions from SNP 210353 to 210953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,407 DEBUG Processing 704/852 atomic regions from SNP 211086 to 211686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,418 DEBUG Processing 182/219 atomic regions from SNP 54481 to 55082 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:38,440 DEBUG Processing 545/1109 atomic regions from SNP 163326 to 163926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,564 DEBUG Processing 520/629 atomic regions from SNP 155866 to 156466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,588 DEBUG Processing 603/993 atomic regions from SNP 180634 to 181234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,596 DEBUG Processing 703/830 atomic regions from SNP 210653 to 211253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,654 DEBUG Processing 183/219 atomic regions from SNP 54782 to 55383 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:38,667 DEBUG Processing 705/852 atomic regions from SNP 211386 to 211986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,719 DEBUG Processing 546/1109 atomic regions from SNP 163626 to 164226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,797 DEBUG Processing 521/629 atomic regions from SNP 156166 to 156766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,834 DEBUG Processing 704/830 atomic regions from SNP 210953 to 211553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,847 DEBUG Processing 604/993 atomic regions from SNP 180934 to 181534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,892 DEBUG Processing 184/219 atomic regions from SNP 55083 to 55684 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:38,903 DEBUG Processing 706/852 atomic regions from SNP 211686 to 212286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,998 DEBUG Processing 547/1109 atomic regions from SNP 163926 to 164526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,030 DEBUG Processing 522/629 atomic regions from SNP 156466 to 157066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,071 DEBUG Processing 705/830 atomic regions from SNP 211253 to 211853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,107 DEBUG Processing 605/993 atomic regions from SNP 181234 to 181834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,130 DEBUG Processing 185/219 atomic regions from SNP 55384 to 55985 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:39,139 DEBUG Processing 707/852 atomic regions from SNP 211986 to 212586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,273 DEBUG Processing 523/629 atomic regions from SNP 156766 to 157366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,279 DEBUG Processing 548/1109 atomic regions from SNP 164226 to 164826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,305 DEBUG Processing 706/830 atomic regions from SNP 211553 to 212153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,365 DEBUG Processing 186/219 atomic regions from SNP 55685 to 56286 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:39,374 DEBUG Processing 708/852 atomic regions from SNP 212286 to 212886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,374 DEBUG Processing 606/993 atomic regions from SNP 181534 to 182134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,508 DEBUG Processing 524/629 atomic regions from SNP 157066 to 157666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,550 DEBUG Processing 707/830 atomic regions from SNP 211853 to 212453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,567 DEBUG Processing 549/1109 atomic regions from SNP 164526 to 165126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,607 DEBUG Processing 187/219 atomic regions from SNP 55986 to 56587 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:39,612 DEBUG Processing 709/852 atomic regions from SNP 212586 to 213186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,635 DEBUG Processing 607/993 atomic regions from SNP 181834 to 182434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,763 DEBUG Processing 525/629 atomic regions from SNP 157366 to 157966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,789 DEBUG Processing 708/830 atomic regions from SNP 212153 to 212753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,846 DEBUG Processing 550/1109 atomic regions from SNP 164826 to 165426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,847 DEBUG Processing 710/852 atomic regions from SNP 212886 to 213486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,879 DEBUG Processing 188/219 atomic regions from SNP 56287 to 56888 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:39,897 DEBUG Processing 608/993 atomic regions from SNP 182134 to 182734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,003 DEBUG Processing 526/629 atomic regions from SNP 157666 to 158266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,025 DEBUG Processing 709/830 atomic regions from SNP 212453 to 213053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,083 DEBUG Processing 711/852 atomic regions from SNP 213186 to 213786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,124 DEBUG Processing 551/1109 atomic regions from SNP 165126 to 165726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,130 DEBUG Processing 189/219 atomic regions from SNP 56588 to 57189 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:40,159 DEBUG Processing 609/993 atomic regions from SNP 182434 to 183034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,249 DEBUG Processing 527/629 atomic regions from SNP 157966 to 158566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,260 DEBUG Processing 710/830 atomic regions from SNP 212753 to 213353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,321 DEBUG Processing 712/852 atomic regions from SNP 213486 to 214086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,383 DEBUG Processing 190/219 atomic regions from SNP 56889 to 57490 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:40,411 DEBUG Processing 552/1109 atomic regions from SNP 165426 to 166026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,427 DEBUG Processing 610/993 atomic regions from SNP 182734 to 183334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,498 DEBUG Processing 528/629 atomic regions from SNP 158266 to 158866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,499 DEBUG Processing 711/830 atomic regions from SNP 213053 to 213653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,556 DEBUG Processing 713/852 atomic regions from SNP 213786 to 214386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,617 DEBUG Processing 191/219 atomic regions from SNP 57190 to 57791 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:40,697 DEBUG Processing 611/993 atomic regions from SNP 183034 to 183634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,709 DEBUG Processing 553/1109 atomic regions from SNP 165726 to 166326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,755 DEBUG Processing 712/830 atomic regions from SNP 213353 to 213953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,766 DEBUG Processing 529/629 atomic regions from SNP 158566 to 159166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,792 DEBUG Processing 714/852 atomic regions from SNP 214086 to 214686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,843 DEBUG Processing 192/219 atomic regions from SNP 57491 to 58092 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:40,960 DEBUG Processing 612/993 atomic regions from SNP 183334 to 183934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,997 DEBUG Processing 554/1109 atomic regions from SNP 166026 to 166626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,008 DEBUG Processing 713/830 atomic regions from SNP 213653 to 214253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,013 DEBUG Processing 530/629 atomic regions from SNP 158866 to 159466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,036 DEBUG Processing 715/852 atomic regions from SNP 214386 to 214986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,072 DEBUG Processing 193/219 atomic regions from SNP 57792 to 58393 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:41,226 DEBUG Processing 613/993 atomic regions from SNP 183634 to 184234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,271 DEBUG Processing 714/830 atomic regions from SNP 213953 to 214553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,288 DEBUG Processing 531/629 atomic regions from SNP 159166 to 159766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,291 DEBUG Processing 716/852 atomic regions from SNP 214686 to 215286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,304 DEBUG Processing 555/1109 atomic regions from SNP 166326 to 166926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,316 DEBUG Processing 194/219 atomic regions from SNP 58093 to 58694 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:41,482 DEBUG Processing 614/993 atomic regions from SNP 183934 to 184534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,514 DEBUG Processing 715/830 atomic regions from SNP 214253 to 214853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,530 DEBUG Processing 717/852 atomic regions from SNP 214986 to 215586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,533 DEBUG Processing 532/629 atomic regions from SNP 159466 to 160066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,569 DEBUG Processing 195/219 atomic regions from SNP 58394 to 58995 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:41,602 DEBUG Processing 556/1109 atomic regions from SNP 166626 to 167226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,738 DEBUG Processing 615/993 atomic regions from SNP 184234 to 184834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,751 DEBUG Processing 716/830 atomic regions from SNP 214553 to 215153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,763 DEBUG Processing 718/852 atomic regions from SNP 215286 to 215886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,765 DEBUG Processing 533/629 atomic regions from SNP 159766 to 160366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,820 DEBUG Processing 196/219 atomic regions from SNP 58695 to 59296 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:41,899 DEBUG Processing 557/1109 atomic regions from SNP 166926 to 167526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,985 DEBUG Processing 717/830 atomic regions from SNP 214853 to 215453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,998 DEBUG Processing 534/629 atomic regions from SNP 160066 to 160666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,001 DEBUG Processing 719/852 atomic regions from SNP 215586 to 216186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,003 DEBUG Processing 616/993 atomic regions from SNP 184534 to 185134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,062 DEBUG Processing 197/219 atomic regions from SNP 58996 to 59597 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:42,190 DEBUG Processing 558/1109 atomic regions from SNP 167226 to 167826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,220 DEBUG Processing 718/830 atomic regions from SNP 215153 to 215753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,237 DEBUG Processing 535/629 atomic regions from SNP 160366 to 160966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,240 DEBUG Processing 720/852 atomic regions from SNP 215886 to 216486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,282 DEBUG Processing 617/993 atomic regions from SNP 184834 to 185434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,288 DEBUG Processing 198/219 atomic regions from SNP 59297 to 59898 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:42,463 DEBUG Processing 719/830 atomic regions from SNP 215453 to 216053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,483 DEBUG Processing 559/1109 atomic regions from SNP 167526 to 168126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,483 DEBUG Processing 721/852 atomic regions from SNP 216186 to 216786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,494 DEBUG Processing 536/629 atomic regions from SNP 160666 to 161266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,517 DEBUG Processing 199/219 atomic regions from SNP 59598 to 60199 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:42,566 DEBUG Processing 618/993 atomic regions from SNP 185134 to 185734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,713 DEBUG Processing 720/830 atomic regions from SNP 215753 to 216353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,729 DEBUG Processing 722/852 atomic regions from SNP 216486 to 217086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,761 DEBUG Processing 200/219 atomic regions from SNP 59899 to 60500 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:42,762 DEBUG Processing 537/629 atomic regions from SNP 160966 to 161566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,776 DEBUG Processing 560/1109 atomic regions from SNP 167826 to 168426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,835 DEBUG Processing 619/993 atomic regions from SNP 185434 to 186034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,965 DEBUG Processing 721/830 atomic regions from SNP 216053 to 216653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,974 DEBUG Processing 723/852 atomic regions from SNP 216786 to 217386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,015 DEBUG Processing 201/219 atomic regions from SNP 60200 to 60801 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:43,021 DEBUG Processing 538/629 atomic regions from SNP 161266 to 161866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,073 DEBUG Processing 561/1109 atomic regions from SNP 168126 to 168726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,098 DEBUG Processing 620/993 atomic regions from SNP 185734 to 186334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,206 DEBUG Processing 722/830 atomic regions from SNP 216353 to 216953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,213 DEBUG Processing 724/852 atomic regions from SNP 217086 to 217686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,257 DEBUG Processing 202/219 atomic regions from SNP 60501 to 61102 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:43,268 DEBUG Processing 539/629 atomic regions from SNP 161566 to 162166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,366 DEBUG Processing 621/993 atomic regions from SNP 186034 to 186634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,367 DEBUG Processing 562/1109 atomic regions from SNP 168426 to 169026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,448 DEBUG Processing 723/830 atomic regions from SNP 216653 to 217253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,449 DEBUG Processing 725/852 atomic regions from SNP 217386 to 217986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,497 DEBUG Processing 203/219 atomic regions from SNP 60802 to 61403 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:43,508 DEBUG Processing 540/629 atomic regions from SNP 161866 to 162466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,631 DEBUG Processing 622/993 atomic regions from SNP 186334 to 186934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,652 DEBUG Processing 563/1109 atomic regions from SNP 168726 to 169326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,692 DEBUG Processing 724/830 atomic regions from SNP 216953 to 217553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,704 DEBUG Processing 726/852 atomic regions from SNP 217686 to 218286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,734 DEBUG Processing 204/219 atomic regions from SNP 61103 to 61704 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:43,755 DEBUG Processing 541/629 atomic regions from SNP 162166 to 162766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,910 DEBUG Processing 623/993 atomic regions from SNP 186634 to 187234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,984 DEBUG Processing 564/1109 atomic regions from SNP 169026 to 169626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,005 DEBUG Processing 725/830 atomic regions from SNP 217253 to 217853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,019 DEBUG Processing 205/219 atomic regions from SNP 61404 to 62005 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:44,027 DEBUG Processing 727/852 atomic regions from SNP 217986 to 218586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,029 DEBUG Processing 542/629 atomic regions from SNP 162466 to 163066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,161 DEBUG Processing 624/993 atomic regions from SNP 186934 to 187534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,258 DEBUG Processing 565/1109 atomic regions from SNP 169326 to 169926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,267 DEBUG Processing 206/219 atomic regions from SNP 61705 to 62306 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:44,274 DEBUG Processing 543/629 atomic regions from SNP 162766 to 163366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,276 DEBUG Processing 726/830 atomic regions from SNP 217553 to 218153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,290 DEBUG Processing 728/852 atomic regions from SNP 218286 to 218886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,412 DEBUG Processing 625/993 atomic regions from SNP 187234 to 187834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,502 DEBUG Processing 207/219 atomic regions from SNP 62006 to 62607 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:44,512 DEBUG Processing 544/629 atomic regions from SNP 163066 to 163666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,536 DEBUG Processing 566/1109 atomic regions from SNP 169626 to 170226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,537 DEBUG Processing 727/830 atomic regions from SNP 217853 to 218453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,543 DEBUG Processing 729/852 atomic regions from SNP 218586 to 219186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,665 DEBUG Processing 626/993 atomic regions from SNP 187534 to 188134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,739 DEBUG Processing 208/219 atomic regions from SNP 62307 to 62908 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:44,745 DEBUG Processing 545/629 atomic regions from SNP 163366 to 163966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,792 DEBUG Processing 728/830 atomic regions from SNP 218153 to 218753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,809 DEBUG Processing 730/852 atomic regions from SNP 218886 to 219486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,818 DEBUG Processing 567/1109 atomic regions from SNP 169926 to 170526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,923 DEBUG Processing 627/993 atomic regions from SNP 187834 to 188434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,970 DEBUG Processing 209/219 atomic regions from SNP 62608 to 63209 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:45,002 DEBUG Processing 546/629 atomic regions from SNP 163666 to 164266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,043 DEBUG Processing 729/830 atomic regions from SNP 218453 to 219053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,048 DEBUG Processing 731/852 atomic regions from SNP 219186 to 219786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,098 DEBUG Processing 568/1109 atomic regions from SNP 170226 to 170826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,189 DEBUG Processing 628/993 atomic regions from SNP 188134 to 188734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,206 DEBUG Processing 210/219 atomic regions from SNP 62909 to 63510 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:45,264 DEBUG Processing 547/629 atomic regions from SNP 163966 to 164566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,286 DEBUG Processing 732/852 atomic regions from SNP 219486 to 220086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,309 DEBUG Processing 730/830 atomic regions from SNP 218753 to 219353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,380 DEBUG Processing 569/1109 atomic regions from SNP 170526 to 171126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,435 DEBUG Processing 211/219 atomic regions from SNP 63210 to 63811 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:45,451 DEBUG Processing 629/993 atomic regions from SNP 188434 to 189034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,527 DEBUG Processing 548/629 atomic regions from SNP 164266 to 164866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,528 DEBUG Processing 733/852 atomic regions from SNP 219786 to 220386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,596 DEBUG Processing 731/830 atomic regions from SNP 219053 to 219653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,665 DEBUG Processing 570/1109 atomic regions from SNP 170826 to 171426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,669 DEBUG Processing 212/219 atomic regions from SNP 63511 to 64112 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:45,721 DEBUG Processing 630/993 atomic regions from SNP 188734 to 189334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,769 DEBUG Processing 734/852 atomic regions from SNP 220086 to 220686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,802 DEBUG Processing 549/629 atomic regions from SNP 164566 to 165166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,886 DEBUG Processing 732/830 atomic regions from SNP 219353 to 219953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,909 DEBUG Processing 213/219 atomic regions from SNP 63812 to 64413 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:45,945 DEBUG Processing 571/1109 atomic regions from SNP 171126 to 171726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,990 DEBUG Processing 631/993 atomic regions from SNP 189034 to 189634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,030 DEBUG Processing 735/852 atomic regions from SNP 220386 to 220986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,049 DEBUG Processing 550/629 atomic regions from SNP 164866 to 165466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,134 DEBUG Processing 733/830 atomic regions from SNP 219653 to 220253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,152 DEBUG Processing 214/219 atomic regions from SNP 64113 to 64714 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:46,227 DEBUG Processing 572/1109 atomic regions from SNP 171426 to 172026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,259 DEBUG Processing 632/993 atomic regions from SNP 189334 to 189934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,275 DEBUG Processing 736/852 atomic regions from SNP 220686 to 221286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,310 DEBUG Processing 551/629 atomic regions from SNP 165166 to 165766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,376 DEBUG Processing 734/830 atomic regions from SNP 219953 to 220553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,387 DEBUG Processing 215/219 atomic regions from SNP 64414 to 65015 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:46,511 DEBUG Processing 573/1109 atomic regions from SNP 171726 to 172326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,523 DEBUG Processing 737/852 atomic regions from SNP 220986 to 221586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,528 DEBUG Processing 633/993 atomic regions from SNP 189634 to 190234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,587 DEBUG Processing 552/629 atomic regions from SNP 165466 to 166066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,625 DEBUG Processing 735/830 atomic regions from SNP 220253 to 220853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,632 DEBUG Processing 216/219 atomic regions from SNP 64715 to 65316 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:46,762 DEBUG Processing 738/852 atomic regions from SNP 221286 to 221886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,786 DEBUG Processing 574/1109 atomic regions from SNP 172026 to 172626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,795 DEBUG Processing 634/993 atomic regions from SNP 189934 to 190534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,853 DEBUG Processing 553/629 atomic regions from SNP 165766 to 166366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,881 DEBUG Processing 217/219 atomic regions from SNP 65016 to 65616 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:46,884 DEBUG Processing 736/830 atomic regions from SNP 220553 to 221153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,999 DEBUG Processing 739/852 atomic regions from SNP 221586 to 222186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,059 DEBUG Processing 635/993 atomic regions from SNP 190234 to 190834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,061 DEBUG Processing 575/1109 atomic regions from SNP 172326 to 172926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,118 DEBUG Processing 554/629 atomic regions from SNP 166066 to 166666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,135 DEBUG Processing 218/219 atomic regions from SNP 65316 to 65916 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:47,187 DEBUG Processing 737/830 atomic regions from SNP 220853 to 221453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,246 DEBUG Processing 740/852 atomic regions from SNP 221886 to 222486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,326 DEBUG Processing 636/993 atomic regions from SNP 190534 to 191134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,358 DEBUG Processing 576/1109 atomic regions from SNP 172626 to 173226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,359 DEBUG Processing 555/629 atomic regions from SNP 166366 to 166966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,388 DEBUG Processing 219/219 atomic regions from SNP 65616 to 66216 for chrX (subchromosome 6 of 6). 2025-01-31 09:44:47,511 DEBUG Processing 738/830 atomic regions from SNP 221153 to 221753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,531 DEBUG Processing 741/852 atomic regions from SNP 222186 to 222786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,535 DEBUG Unique SNPs positions in subchromosome 6: 66217 2025-01-31 09:44:47,629 DEBUG Processing 556/629 atomic regions from SNP 166666 to 167266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,632 DEBUG Subchromosome time: 62.681333124637604, subchromosome SNPs: 66217 2025-01-31 09:44:47,632 DEBUG Processing 637/993 atomic regions from SNP 190834 to 191434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,633 DEBUG Estimated BADs: [1.19, 10.73, 3.58, 1.19, 0.00, 0.00, 2.39, 0.60, 2.39, 1.19, 5.96, 2.39, 0.60, 2.39, 1.19, 2.39, 1.19, 0.40, 0.30, 1.19] SNP counts: [3864, 769, 10870, 16815, 2, 37, 7931, 12140, 10395, 28090, 2126, 4741, 21749, 7011, 4744, 12273, 7769, 17334, 11210, 55007] SNP IDs counts: [3864, 769, 10870, 16815, 2, 37, 7931, 12140, 10395, 28090, 2126, 4741, 21749, 7011, 4744, 12273, 7769, 17334, 11210, 55007] Critical gap: 765784bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 7.96Mbp, 14.35Mbp, 26.90Mbp[1.13Mbp], 28.03Mbp[0.98Mbp], 29.68Mbp[1.45Mbp], 40.51Mbp, 48.09Mbp, 54.27Mbp[0.89Mbp], 72.91Mbp, 74.23Mbp, 77.43Mbp, 91.31Mbp, 95.95Mbp, 98.90Mbp, 105.92Mbp, 110.81Mbp, 124.24Mbp[1.77Mbp], 134.01Mbp, 171.03Mbp] 2025-01-31 09:44:47,633 DEBUG chrX time: 62.68216313794255 s 2025-01-31 09:44:47,663 DEBUG Processing 577/1109 atomic regions from SNP 172926 to 173526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,829 DEBUG Processing 739/830 atomic regions from SNP 221453 to 222053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,870 DEBUG Processing 742/852 atomic regions from SNP 222486 to 223086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,905 DEBUG chrX: Fitting background model for 18 segments 2025-01-31 09:44:47,936 DEBUG Processing 557/629 atomic regions from SNP 166966 to 167566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,966 DEBUG Processing 638/993 atomic regions from SNP 191134 to 191734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,995 DEBUG Processing 578/1109 atomic regions from SNP 173226 to 173826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,115 DEBUG Processing 740/830 atomic regions from SNP 221753 to 222353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,159 DEBUG Processing 743/852 atomic regions from SNP 222786 to 223386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,216 DEBUG Processing 558/629 atomic regions from SNP 167266 to 167866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,255 DEBUG Processing 639/993 atomic regions from SNP 191434 to 192034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,293 DEBUG Processing 579/1109 atomic regions from SNP 173526 to 174126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,360 DEBUG Processing 741/830 atomic regions from SNP 222053 to 222653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,409 DEBUG Processing 744/852 atomic regions from SNP 223086 to 223686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,469 DEBUG Processing 559/629 atomic regions from SNP 167566 to 168166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,531 DEBUG Processing 640/993 atomic regions from SNP 191734 to 192334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,575 DEBUG Processing 580/1109 atomic regions from SNP 173826 to 174426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,600 DEBUG Processing 742/830 atomic regions from SNP 222353 to 222953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,648 DEBUG Processing 745/852 atomic regions from SNP 223386 to 223986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,712 DEBUG Processing 560/629 atomic regions from SNP 167866 to 168466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,817 DEBUG Processing 641/993 atomic regions from SNP 192034 to 192634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,878 DEBUG Processing 581/1109 atomic regions from SNP 174126 to 174726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,885 DEBUG Processing 743/830 atomic regions from SNP 222653 to 223253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,898 DEBUG Processing 746/852 atomic regions from SNP 223686 to 224286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,960 DEBUG Processing 561/629 atomic regions from SNP 168166 to 168766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,096 DEBUG Processing 642/993 atomic regions from SNP 192334 to 192934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,173 DEBUG Processing 744/830 atomic regions from SNP 222953 to 223553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,186 DEBUG Processing 747/852 atomic regions from SNP 223986 to 224586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,197 DEBUG Processing 582/1109 atomic regions from SNP 174426 to 175026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,245 DEBUG Processing 562/629 atomic regions from SNP 168466 to 169066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,371 DEBUG Processing 643/993 atomic regions from SNP 192634 to 193234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,469 DEBUG Processing 745/830 atomic regions from SNP 223253 to 223853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,471 DEBUG Processing 748/852 atomic regions from SNP 224286 to 224886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,515 DEBUG Processing 583/1109 atomic regions from SNP 174726 to 175326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,520 DEBUG Processing 563/629 atomic regions from SNP 168766 to 169366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,686 DEBUG Processing 644/993 atomic regions from SNP 192934 to 193534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,768 DEBUG Processing 746/830 atomic regions from SNP 223553 to 224153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,771 DEBUG Processing 749/852 atomic regions from SNP 224586 to 225186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,810 DEBUG Processing 564/629 atomic regions from SNP 169066 to 169666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,830 DEBUG Processing 584/1109 atomic regions from SNP 175026 to 175626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,042 DEBUG Processing 645/993 atomic regions from SNP 193234 to 193834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,085 DEBUG Processing 750/852 atomic regions from SNP 224886 to 225486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,115 DEBUG Processing 565/629 atomic regions from SNP 169366 to 169966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,116 DEBUG Processing 747/830 atomic regions from SNP 223853 to 224453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,170 DEBUG Processing 585/1109 atomic regions from SNP 175326 to 175926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,401 DEBUG Processing 646/993 atomic regions from SNP 193534 to 194134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,441 DEBUG Processing 751/852 atomic regions from SNP 225186 to 225786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,456 DEBUG Processing 566/629 atomic regions from SNP 169666 to 170266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,497 DEBUG Processing 748/830 atomic regions from SNP 224153 to 224753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,570 DEBUG Processing 586/1109 atomic regions from SNP 175626 to 176226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,790 DEBUG Processing 647/993 atomic regions from SNP 193834 to 194434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,821 DEBUG Processing 752/852 atomic regions from SNP 225486 to 226086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,852 DEBUG Processing 567/629 atomic regions from SNP 169966 to 170566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,890 DEBUG Processing 749/830 atomic regions from SNP 224453 to 225053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,023 DEBUG Processing 587/1109 atomic regions from SNP 175926 to 176526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,103 DEBUG Processing 753/852 atomic regions from SNP 225786 to 226386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,106 DEBUG Processing 648/993 atomic regions from SNP 194134 to 194734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,135 DEBUG Processing 568/629 atomic regions from SNP 170266 to 170866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,204 DEBUG Processing 750/830 atomic regions from SNP 224753 to 225353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,384 DEBUG Processing 754/852 atomic regions from SNP 226086 to 226686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,395 DEBUG Processing 588/1109 atomic regions from SNP 176226 to 176826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,412 DEBUG Processing 569/629 atomic regions from SNP 170566 to 171166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,426 DEBUG Processing 649/993 atomic regions from SNP 194434 to 195034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,447 DEBUG Processing 751/830 atomic regions from SNP 225053 to 225653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,711 DEBUG Processing 755/852 atomic regions from SNP 226386 to 226986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,742 DEBUG Processing 570/629 atomic regions from SNP 170866 to 171466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,750 DEBUG Processing 752/830 atomic regions from SNP 225353 to 225953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,775 DEBUG Processing 589/1109 atomic regions from SNP 176526 to 177126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,789 DEBUG Processing 650/993 atomic regions from SNP 194734 to 195334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,999 DEBUG Processing 756/852 atomic regions from SNP 226686 to 227286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,034 DEBUG Processing 753/830 atomic regions from SNP 225653 to 226253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,041 DEBUG Processing 571/629 atomic regions from SNP 171166 to 171766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,124 DEBUG Processing 590/1109 atomic regions from SNP 176826 to 177426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,133 DEBUG Processing 651/993 atomic regions from SNP 195034 to 195634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,255 DEBUG Processing 757/852 atomic regions from SNP 226986 to 227586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,271 DEBUG Processing 754/830 atomic regions from SNP 225953 to 226553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,321 DEBUG Processing 572/629 atomic regions from SNP 171466 to 172066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,411 DEBUG Processing 652/993 atomic regions from SNP 195334 to 195934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,419 DEBUG Processing 591/1109 atomic regions from SNP 177126 to 177726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,519 DEBUG Processing 758/852 atomic regions from SNP 227286 to 227886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,523 DEBUG Processing 755/830 atomic regions from SNP 226253 to 226853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,571 DEBUG Processing 573/629 atomic regions from SNP 171766 to 172366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,705 DEBUG Processing 653/993 atomic regions from SNP 195634 to 196234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,731 DEBUG Processing 592/1109 atomic regions from SNP 177426 to 178026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,838 DEBUG Processing 759/852 atomic regions from SNP 227586 to 228186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,859 DEBUG Processing 756/830 atomic regions from SNP 226553 to 227153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,870 DEBUG Processing 574/629 atomic regions from SNP 172066 to 172666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,049 DEBUG Processing 654/993 atomic regions from SNP 195934 to 196534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,067 DEBUG Processing 593/1109 atomic regions from SNP 177726 to 178326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,180 DEBUG Processing 760/852 atomic regions from SNP 227886 to 228486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,209 DEBUG Processing 575/629 atomic regions from SNP 172366 to 172966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,229 DEBUG Processing 757/830 atomic regions from SNP 226853 to 227453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,391 DEBUG Processing 655/993 atomic regions from SNP 196234 to 196834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,421 DEBUG Processing 594/1109 atomic regions from SNP 178026 to 178626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,564 DEBUG Processing 761/852 atomic regions from SNP 228186 to 228786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,585 DEBUG Processing 576/629 atomic regions from SNP 172666 to 173266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,593 DEBUG Processing 758/830 atomic regions from SNP 227153 to 227753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,795 DEBUG Processing 656/993 atomic regions from SNP 196534 to 197134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,808 DEBUG Processing 595/1109 atomic regions from SNP 178326 to 178926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,845 DEBUG Processing 762/852 atomic regions from SNP 228486 to 229086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,852 DEBUG Processing 577/629 atomic regions from SNP 172966 to 173566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,881 DEBUG Processing 759/830 atomic regions from SNP 227453 to 228053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,148 DEBUG Processing 657/993 atomic regions from SNP 196834 to 197434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,198 DEBUG Processing 596/1109 atomic regions from SNP 178626 to 179226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,213 DEBUG Processing 763/852 atomic regions from SNP 228786 to 229386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,240 DEBUG Processing 578/629 atomic regions from SNP 173266 to 173866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,287 DEBUG Processing 760/830 atomic regions from SNP 227753 to 228353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,493 DEBUG Processing 658/993 atomic regions from SNP 197134 to 197734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,557 DEBUG Processing 764/852 atomic regions from SNP 229086 to 229686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,566 DEBUG Processing 597/1109 atomic regions from SNP 178926 to 179526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,624 DEBUG Processing 579/629 atomic regions from SNP 173566 to 174166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,660 DEBUG Processing 761/830 atomic regions from SNP 228053 to 228653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,839 DEBUG Processing 765/852 atomic regions from SNP 229386 to 229986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,846 DEBUG Processing 659/993 atomic regions from SNP 197434 to 198034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,881 DEBUG Processing 598/1109 atomic regions from SNP 179226 to 179826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,899 DEBUG Processing 580/629 atomic regions from SNP 173866 to 174466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,918 DEBUG Processing 762/830 atomic regions from SNP 228353 to 228953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,084 DEBUG Processing 766/852 atomic regions from SNP 229686 to 230286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,141 DEBUG Processing 660/993 atomic regions from SNP 197734 to 198334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,163 DEBUG Processing 581/629 atomic regions from SNP 174166 to 174766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,165 DEBUG Processing 599/1109 atomic regions from SNP 179526 to 180126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,182 DEBUG Processing 763/830 atomic regions from SNP 228653 to 229253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,343 DEBUG Processing 767/852 atomic regions from SNP 229986 to 230586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,422 DEBUG Processing 582/629 atomic regions from SNP 174466 to 175066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,423 DEBUG Processing 661/993 atomic regions from SNP 198034 to 198634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,443 DEBUG Processing 600/1109 atomic regions from SNP 179826 to 180426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,462 DEBUG Processing 764/830 atomic regions from SNP 228953 to 229553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,593 DEBUG Processing 768/852 atomic regions from SNP 230286 to 230886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,689 DEBUG Processing 583/629 atomic regions from SNP 174766 to 175366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,708 DEBUG Processing 662/993 atomic regions from SNP 198334 to 198934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,728 DEBUG Processing 601/1109 atomic regions from SNP 180126 to 180726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,736 DEBUG Processing 765/830 atomic regions from SNP 229253 to 229853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,835 DEBUG Processing 769/852 atomic regions from SNP 230586 to 231186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,964 DEBUG Processing 584/629 atomic regions from SNP 175066 to 175666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,984 DEBUG Processing 663/993 atomic regions from SNP 198634 to 199234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,003 DEBUG Processing 766/830 atomic regions from SNP 229553 to 230153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,022 DEBUG Processing 602/1109 atomic regions from SNP 180426 to 181026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,074 DEBUG Processing 770/852 atomic regions from SNP 230886 to 231486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,231 DEBUG Processing 585/629 atomic regions from SNP 175366 to 175966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,256 DEBUG Processing 767/830 atomic regions from SNP 229853 to 230453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,282 DEBUG Processing 664/993 atomic regions from SNP 198934 to 199534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,317 DEBUG Processing 603/1109 atomic regions from SNP 180726 to 181326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,319 DEBUG Processing 771/852 atomic regions from SNP 231186 to 231786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,494 DEBUG Processing 586/629 atomic regions from SNP 175666 to 176266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,513 DEBUG Processing 768/830 atomic regions from SNP 230153 to 230753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,561 DEBUG Processing 665/993 atomic regions from SNP 199234 to 199834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,571 DEBUG Processing 772/852 atomic regions from SNP 231486 to 232086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,611 DEBUG Processing 604/1109 atomic regions from SNP 181026 to 181626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,740 DEBUG Processing 587/629 atomic regions from SNP 175966 to 176566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,763 DEBUG Processing 769/830 atomic regions from SNP 230453 to 231053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,824 DEBUG Processing 773/852 atomic regions from SNP 231786 to 232386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,840 DEBUG Processing 666/993 atomic regions from SNP 199534 to 200134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,892 DEBUG Processing 605/1109 atomic regions from SNP 181326 to 181926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,991 DEBUG Processing 588/629 atomic regions from SNP 176266 to 176866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,005 DEBUG Processing 770/830 atomic regions from SNP 230753 to 231353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,068 DEBUG Processing 774/852 atomic regions from SNP 232086 to 232686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,122 DEBUG Processing 667/993 atomic regions from SNP 199834 to 200434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,173 DEBUG Processing 606/1109 atomic regions from SNP 181626 to 182226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,244 DEBUG Processing 771/830 atomic regions from SNP 231053 to 231653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,256 DEBUG Processing 589/629 atomic regions from SNP 176566 to 177166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,317 DEBUG Processing 775/852 atomic regions from SNP 232386 to 232986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,400 DEBUG Processing 668/993 atomic regions from SNP 200134 to 200734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,454 DEBUG Processing 607/1109 atomic regions from SNP 181926 to 182526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,488 DEBUG Processing 772/830 atomic regions from SNP 231353 to 231953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,519 DEBUG Processing 590/629 atomic regions from SNP 176866 to 177466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,564 DEBUG Processing 776/852 atomic regions from SNP 232686 to 233286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,665 DEBUG Processing 669/993 atomic regions from SNP 200434 to 201034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,733 DEBUG Processing 773/830 atomic regions from SNP 231653 to 232253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,738 DEBUG Processing 608/1109 atomic regions from SNP 182226 to 182826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,774 DEBUG Processing 591/629 atomic regions from SNP 177166 to 177766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,820 DEBUG Processing 777/852 atomic regions from SNP 232986 to 233586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,934 DEBUG Processing 670/993 atomic regions from SNP 200734 to 201334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,976 DEBUG Processing 774/830 atomic regions from SNP 231953 to 232553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,027 DEBUG Processing 609/1109 atomic regions from SNP 182526 to 183126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,049 DEBUG Processing 592/629 atomic regions from SNP 177466 to 178066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,077 DEBUG Processing 778/852 atomic regions from SNP 233286 to 233886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,204 DEBUG Processing 671/993 atomic regions from SNP 201034 to 201634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,214 DEBUG Processing 775/830 atomic regions from SNP 232253 to 232853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,311 DEBUG Processing 610/1109 atomic regions from SNP 182826 to 183426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,323 DEBUG Processing 593/629 atomic regions from SNP 177766 to 178366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,329 DEBUG Processing 779/852 atomic regions from SNP 233586 to 234186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,484 DEBUG Processing 672/993 atomic regions from SNP 201334 to 201934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,486 DEBUG Processing 776/830 atomic regions from SNP 232553 to 233153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,584 DEBUG Processing 780/852 atomic regions from SNP 233886 to 234486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,590 DEBUG Processing 594/629 atomic regions from SNP 178066 to 178666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,600 DEBUG Processing 611/1109 atomic regions from SNP 183126 to 183726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,744 DEBUG Processing 777/830 atomic regions from SNP 232853 to 233453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,773 DEBUG Processing 673/993 atomic regions from SNP 201634 to 202234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,831 DEBUG Processing 781/852 atomic regions from SNP 234186 to 234786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,853 DEBUG Processing 595/629 atomic regions from SNP 178366 to 178966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,881 DEBUG Processing 612/1109 atomic regions from SNP 183426 to 184026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,010 DEBUG Processing 778/830 atomic regions from SNP 233153 to 233753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,045 DEBUG Processing 674/993 atomic regions from SNP 201934 to 202534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,080 DEBUG Processing 782/852 atomic regions from SNP 234486 to 235086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,105 DEBUG Processing 596/629 atomic regions from SNP 178666 to 179266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,160 DEBUG Processing 613/1109 atomic regions from SNP 183726 to 184326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,282 DEBUG Processing 779/830 atomic regions from SNP 233453 to 234053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,318 DEBUG Processing 675/993 atomic regions from SNP 202234 to 202834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,330 DEBUG Processing 783/852 atomic regions from SNP 234786 to 235386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,359 DEBUG Processing 597/629 atomic regions from SNP 178966 to 179566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,437 DEBUG Processing 614/1109 atomic regions from SNP 184026 to 184626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,536 DEBUG Processing 780/830 atomic regions from SNP 233753 to 234353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,596 DEBUG Processing 784/852 atomic regions from SNP 235086 to 235686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,610 DEBUG Processing 676/993 atomic regions from SNP 202534 to 203134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,634 DEBUG Processing 598/629 atomic regions from SNP 179266 to 179866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,713 DEBUG Processing 615/1109 atomic regions from SNP 184326 to 184926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,785 DEBUG Processing 781/830 atomic regions from SNP 234053 to 234653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,848 DEBUG Processing 785/852 atomic regions from SNP 235386 to 235986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,887 DEBUG Processing 599/629 atomic regions from SNP 179566 to 180166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,901 DEBUG Processing 677/993 atomic regions from SNP 202834 to 203434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,002 DEBUG Processing 616/1109 atomic regions from SNP 184626 to 185226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,054 DEBUG Processing 782/830 atomic regions from SNP 234353 to 234953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,100 DEBUG Processing 786/852 atomic regions from SNP 235686 to 236286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,140 DEBUG Processing 600/629 atomic regions from SNP 179866 to 180466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,199 DEBUG Processing 678/993 atomic regions from SNP 203134 to 203734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,281 DEBUG Processing 617/1109 atomic regions from SNP 184926 to 185526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,312 DEBUG Processing 783/830 atomic regions from SNP 234653 to 235253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,344 DEBUG Processing 787/852 atomic regions from SNP 235986 to 236586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,394 DEBUG Processing 601/629 atomic regions from SNP 180166 to 180766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,503 DEBUG Processing 679/993 atomic regions from SNP 203434 to 204034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,558 DEBUG Processing 618/1109 atomic regions from SNP 185226 to 185826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,575 DEBUG Processing 784/830 atomic regions from SNP 234953 to 235553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,590 DEBUG Processing 788/852 atomic regions from SNP 236286 to 236886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,640 DEBUG Processing 602/629 atomic regions from SNP 180466 to 181066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,781 DEBUG Processing 680/993 atomic regions from SNP 203734 to 204334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,833 DEBUG Processing 785/830 atomic regions from SNP 235253 to 235853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,834 DEBUG Processing 619/1109 atomic regions from SNP 185526 to 186126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,841 DEBUG Processing 789/852 atomic regions from SNP 236586 to 237186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,912 DEBUG Processing 603/629 atomic regions from SNP 180766 to 181366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,061 DEBUG Processing 681/993 atomic regions from SNP 204034 to 204634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,081 DEBUG Processing 786/830 atomic regions from SNP 235553 to 236153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,097 DEBUG Processing 790/852 atomic regions from SNP 236886 to 237486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,116 DEBUG Processing 620/1109 atomic regions from SNP 185826 to 186426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,204 DEBUG Processing 604/629 atomic regions from SNP 181066 to 181666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,338 DEBUG Processing 682/993 atomic regions from SNP 204334 to 204934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,348 DEBUG Processing 787/830 atomic regions from SNP 235853 to 236453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,357 DEBUG Processing 791/852 atomic regions from SNP 237186 to 237786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,401 DEBUG Processing 621/1109 atomic regions from SNP 186126 to 186726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,469 DEBUG Processing 605/629 atomic regions from SNP 181366 to 181966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,603 DEBUG Processing 788/830 atomic regions from SNP 236153 to 236753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,610 DEBUG Processing 792/852 atomic regions from SNP 237486 to 238086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,610 DEBUG Processing 683/993 atomic regions from SNP 204634 to 205234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,695 DEBUG Processing 622/1109 atomic regions from SNP 186426 to 187026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,740 DEBUG Processing 606/629 atomic regions from SNP 181666 to 182266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,837 DEBUG Processing 789/830 atomic regions from SNP 236453 to 237053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,853 DEBUG Processing 793/852 atomic regions from SNP 237786 to 238386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,880 DEBUG Processing 684/993 atomic regions from SNP 204934 to 205534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,988 DEBUG Processing 623/1109 atomic regions from SNP 186726 to 187326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,997 DEBUG Processing 607/629 atomic regions from SNP 181966 to 182566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,069 DEBUG Processing 790/830 atomic regions from SNP 236753 to 237353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,093 DEBUG Processing 794/852 atomic regions from SNP 238086 to 238686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,148 DEBUG Processing 685/993 atomic regions from SNP 205234 to 205834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,252 DEBUG Processing 608/629 atomic regions from SNP 182266 to 182866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,272 DEBUG Processing 624/1109 atomic regions from SNP 187026 to 187626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,311 DEBUG Processing 791/830 atomic regions from SNP 237053 to 237653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,337 DEBUG Processing 795/852 atomic regions from SNP 238386 to 238986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,415 DEBUG Processing 686/993 atomic regions from SNP 205534 to 206134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,508 DEBUG Processing 609/629 atomic regions from SNP 182566 to 183166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,554 DEBUG Processing 625/1109 atomic regions from SNP 187326 to 187926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,559 DEBUG Processing 792/830 atomic regions from SNP 237353 to 237953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,592 DEBUG Processing 796/852 atomic regions from SNP 238686 to 239286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,686 DEBUG Processing 687/993 atomic regions from SNP 205834 to 206434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,759 DEBUG Processing 610/629 atomic regions from SNP 182866 to 183466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,837 DEBUG Processing 793/830 atomic regions from SNP 237653 to 238253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,840 DEBUG Processing 626/1109 atomic regions from SNP 187626 to 188226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,846 DEBUG Processing 797/852 atomic regions from SNP 238986 to 239586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,968 DEBUG Processing 688/993 atomic regions from SNP 206134 to 206734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,026 DEBUG Processing 611/629 atomic regions from SNP 183166 to 183766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,165 DEBUG Processing 794/830 atomic regions from SNP 237953 to 238553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,171 DEBUG Processing 798/852 atomic regions from SNP 239286 to 239886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,201 DEBUG Processing 627/1109 atomic regions from SNP 187926 to 188526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,308 DEBUG Processing 689/993 atomic regions from SNP 206434 to 207034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,320 DEBUG Processing 612/629 atomic regions from SNP 183466 to 184066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,487 DEBUG Processing 795/830 atomic regions from SNP 238253 to 238853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,511 DEBUG Processing 799/852 atomic regions from SNP 239586 to 240186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,578 DEBUG Processing 628/1109 atomic regions from SNP 188226 to 188826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,702 DEBUG Processing 613/629 atomic regions from SNP 183766 to 184366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,709 DEBUG Processing 690/993 atomic regions from SNP 206734 to 207334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,803 DEBUG Processing 796/830 atomic regions from SNP 238553 to 239153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,841 DEBUG Processing 800/852 atomic regions from SNP 239886 to 240486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,919 DEBUG Processing 629/1109 atomic regions from SNP 188526 to 189126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,076 DEBUG Processing 614/629 atomic regions from SNP 184066 to 184666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,134 DEBUG Processing 691/993 atomic regions from SNP 207034 to 207634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,180 DEBUG Processing 797/830 atomic regions from SNP 238853 to 239453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,227 DEBUG Processing 801/852 atomic regions from SNP 240186 to 240786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,337 DEBUG Processing 630/1109 atomic regions from SNP 188826 to 189426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,424 DEBUG Processing 615/629 atomic regions from SNP 184366 to 184966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,549 DEBUG Processing 692/993 atomic regions from SNP 207334 to 207934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,622 DEBUG Processing 798/830 atomic regions from SNP 239153 to 239753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,643 DEBUG Processing 802/852 atomic regions from SNP 240486 to 241086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,762 DEBUG Processing 631/1109 atomic regions from SNP 189126 to 189726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,779 DEBUG Processing 616/629 atomic regions from SNP 184666 to 185266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,930 DEBUG Processing 693/993 atomic regions from SNP 207634 to 208234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,030 DEBUG Processing 799/830 atomic regions from SNP 239453 to 240053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,054 DEBUG Processing 803/852 atomic regions from SNP 240786 to 241386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,187 DEBUG Processing 617/629 atomic regions from SNP 184966 to 185566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,201 DEBUG Processing 632/1109 atomic regions from SNP 189426 to 190026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,296 DEBUG Processing 694/993 atomic regions from SNP 207934 to 208534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,330 DEBUG Processing 800/830 atomic regions from SNP 239753 to 240353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,360 DEBUG Processing 804/852 atomic regions from SNP 241086 to 241686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,489 DEBUG Processing 618/629 atomic regions from SNP 185266 to 185866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,516 DEBUG Processing 633/1109 atomic regions from SNP 189726 to 190326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,584 DEBUG Processing 695/993 atomic regions from SNP 208234 to 208834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,586 DEBUG Processing 801/830 atomic regions from SNP 240053 to 240653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,622 DEBUG Processing 805/852 atomic regions from SNP 241386 to 241986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,754 DEBUG Processing 619/629 atomic regions from SNP 185566 to 186166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,814 DEBUG Processing 634/1109 atomic regions from SNP 190026 to 190626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,893 DEBUG Processing 802/830 atomic regions from SNP 240353 to 240953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,913 DEBUG Processing 806/852 atomic regions from SNP 241686 to 242286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,917 DEBUG Processing 696/993 atomic regions from SNP 208534 to 209134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,044 DEBUG Processing 620/629 atomic regions from SNP 185866 to 186466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,125 DEBUG Processing 635/1109 atomic regions from SNP 190326 to 190926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,195 DEBUG Processing 803/830 atomic regions from SNP 240653 to 241253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,233 DEBUG Processing 807/852 atomic regions from SNP 241986 to 242586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,259 DEBUG Processing 697/993 atomic regions from SNP 208834 to 209434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,358 DEBUG Processing 621/629 atomic regions from SNP 186166 to 186766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,478 DEBUG Processing 636/1109 atomic regions from SNP 190626 to 191226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,513 DEBUG Processing 804/830 atomic regions from SNP 240953 to 241553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,562 DEBUG Processing 808/852 atomic regions from SNP 242286 to 242886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,598 DEBUG Processing 698/993 atomic regions from SNP 209134 to 209734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,703 DEBUG Processing 622/629 atomic regions from SNP 186466 to 187066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,847 DEBUG Processing 805/830 atomic regions from SNP 241253 to 241853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,852 DEBUG Processing 637/1109 atomic regions from SNP 190926 to 191526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,897 DEBUG Processing 809/852 atomic regions from SNP 242586 to 243186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,926 DEBUG Processing 699/993 atomic regions from SNP 209434 to 210034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,029 DEBUG Processing 623/629 atomic regions from SNP 186766 to 187366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,229 DEBUG Processing 806/830 atomic regions from SNP 241553 to 242153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,264 DEBUG Processing 638/1109 atomic regions from SNP 191226 to 191826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,280 DEBUG Processing 810/852 atomic regions from SNP 242886 to 243486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,307 DEBUG Processing 700/993 atomic regions from SNP 209734 to 210334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,373 DEBUG Processing 624/629 atomic regions from SNP 187066 to 187666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,588 DEBUG Processing 807/830 atomic regions from SNP 241853 to 242453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,677 DEBUG Processing 811/852 atomic regions from SNP 243186 to 243786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,705 DEBUG Processing 639/1109 atomic regions from SNP 191526 to 192126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,721 DEBUG Processing 701/993 atomic regions from SNP 210034 to 210634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,721 DEBUG Processing 625/629 atomic regions from SNP 187366 to 187966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,823 DEBUG Processing 808/830 atomic regions from SNP 242153 to 242753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,934 DEBUG Processing 812/852 atomic regions from SNP 243486 to 244086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,007 DEBUG Processing 640/1109 atomic regions from SNP 191826 to 192426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,014 DEBUG Processing 626/629 atomic regions from SNP 187666 to 188266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,025 DEBUG Processing 702/993 atomic regions from SNP 210334 to 210934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,061 DEBUG Processing 809/830 atomic regions from SNP 242453 to 243053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,165 DEBUG Processing 813/852 atomic regions from SNP 243786 to 244386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,287 DEBUG Processing 641/1109 atomic regions from SNP 192126 to 192726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,291 DEBUG Processing 627/629 atomic regions from SNP 187966 to 188566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,301 DEBUG Processing 703/993 atomic regions from SNP 210634 to 211234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,304 DEBUG Processing 810/830 atomic regions from SNP 242753 to 243353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,397 DEBUG Processing 814/852 atomic regions from SNP 244086 to 244686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,554 DEBUG Processing 811/830 atomic regions from SNP 243053 to 243653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,568 DEBUG Processing 628/629 atomic regions from SNP 188266 to 188866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,572 DEBUG Processing 704/993 atomic regions from SNP 210934 to 211534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,576 DEBUG Processing 642/1109 atomic regions from SNP 192426 to 193026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,641 DEBUG Processing 815/852 atomic regions from SNP 244386 to 244986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,794 DEBUG Processing 812/830 atomic regions from SNP 243353 to 243953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,839 DEBUG Processing 629/629 atomic regions from SNP 188566 to 189166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,847 DEBUG Processing 705/993 atomic regions from SNP 211234 to 211834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,863 DEBUG Processing 643/1109 atomic regions from SNP 192726 to 193326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,907 DEBUG Processing 816/852 atomic regions from SNP 244686 to 245286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,991 DEBUG Unique SNPs positions in subchromosome 2: 189167 2025-01-31 09:45:09,034 DEBUG Processing 813/830 atomic regions from SNP 243653 to 244253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,118 DEBUG Processing 706/993 atomic regions from SNP 211534 to 212134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,149 DEBUG Processing 644/1109 atomic regions from SNP 193026 to 193626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,165 DEBUG Processing 817/852 atomic regions from SNP 244986 to 245586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,274 DEBUG Processing 814/830 atomic regions from SNP 243953 to 244553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,402 DEBUG Processing 707/993 atomic regions from SNP 211834 to 212434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,406 DEBUG Processing 818/852 atomic regions from SNP 245286 to 245886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,424 DEBUG Processing 645/1109 atomic regions from SNP 193326 to 193926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,548 DEBUG Processing 815/830 atomic regions from SNP 244253 to 244853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,645 DEBUG Processing 819/852 atomic regions from SNP 245586 to 246186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,680 DEBUG Processing 708/993 atomic regions from SNP 212134 to 212734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,699 DEBUG Processing 646/1109 atomic regions from SNP 193626 to 194226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,813 DEBUG Processing 816/830 atomic regions from SNP 244553 to 245153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,892 DEBUG Processing 820/852 atomic regions from SNP 245886 to 246486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,971 DEBUG Processing 709/993 atomic regions from SNP 212434 to 213034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,973 DEBUG Processing 647/1109 atomic regions from SNP 193926 to 194526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,067 DEBUG Processing 817/830 atomic regions from SNP 244853 to 245453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,137 DEBUG Processing 821/852 atomic regions from SNP 246186 to 246786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,240 DEBUG Processing 710/993 atomic regions from SNP 212734 to 213334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,247 DEBUG Processing 648/1109 atomic regions from SNP 194226 to 194826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,310 DEBUG Processing 818/830 atomic regions from SNP 245153 to 245753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,376 DEBUG Processing 822/852 atomic regions from SNP 246486 to 247086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,508 DEBUG Processing 711/993 atomic regions from SNP 213034 to 213634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,521 DEBUG Processing 649/1109 atomic regions from SNP 194526 to 195126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,570 DEBUG Processing 819/830 atomic regions from SNP 245453 to 246053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,613 DEBUG Processing 823/852 atomic regions from SNP 246786 to 247386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,781 DEBUG Processing 712/993 atomic regions from SNP 213334 to 213934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,796 DEBUG Processing 650/1109 atomic regions from SNP 194826 to 195426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,821 DEBUG Processing 820/830 atomic regions from SNP 245753 to 246353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,848 DEBUG Processing 824/852 atomic regions from SNP 247086 to 247686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,054 DEBUG Processing 713/993 atomic regions from SNP 213634 to 214234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,060 DEBUG Processing 821/830 atomic regions from SNP 246053 to 246653 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,089 DEBUG Processing 825/852 atomic regions from SNP 247386 to 247986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,097 DEBUG Processing 651/1109 atomic regions from SNP 195126 to 195726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,301 DEBUG Processing 822/830 atomic regions from SNP 246353 to 246953 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,327 DEBUG Processing 714/993 atomic regions from SNP 213934 to 214534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,332 DEBUG Processing 826/852 atomic regions from SNP 247686 to 248286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,403 DEBUG Processing 652/1109 atomic regions from SNP 195426 to 196026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,548 DEBUG Processing 823/830 atomic regions from SNP 246653 to 247253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,584 DEBUG Processing 827/852 atomic regions from SNP 247986 to 248586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,604 DEBUG Processing 715/993 atomic regions from SNP 214234 to 214834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,690 DEBUG Processing 653/1109 atomic regions from SNP 195726 to 196326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,790 DEBUG Processing 824/830 atomic regions from SNP 246953 to 247553 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,837 DEBUG Processing 828/852 atomic regions from SNP 248286 to 248886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,883 DEBUG Processing 716/993 atomic regions from SNP 214534 to 215134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,962 DEBUG Processing 654/1109 atomic regions from SNP 196026 to 196626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,028 DEBUG Processing 825/830 atomic regions from SNP 247253 to 247853 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,087 DEBUG Processing 829/852 atomic regions from SNP 248586 to 249186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,165 DEBUG Processing 717/993 atomic regions from SNP 214834 to 215434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,238 DEBUG Processing 655/1109 atomic regions from SNP 196326 to 196926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,257 DEBUG Processing 826/830 atomic regions from SNP 247553 to 248153 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,267 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:45:12,329 DEBUG Processing 830/852 atomic regions from SNP 248886 to 249486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,449 DEBUG Processing 718/993 atomic regions from SNP 215134 to 215734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,499 DEBUG Processing 827/830 atomic regions from SNP 247853 to 248453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,521 DEBUG Processing 656/1109 atomic regions from SNP 196626 to 197226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,570 DEBUG Processing 831/852 atomic regions from SNP 249186 to 249786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,740 DEBUG Processing 719/993 atomic regions from SNP 215434 to 216034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,743 DEBUG Processing 828/830 atomic regions from SNP 248153 to 248753 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,808 DEBUG Processing 657/1109 atomic regions from SNP 196926 to 197526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,817 DEBUG Processing 832/852 atomic regions from SNP 249486 to 250086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,988 DEBUG Processing 829/830 atomic regions from SNP 248453 to 249053 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,027 DEBUG Processing 720/993 atomic regions from SNP 215734 to 216334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,072 DEBUG Processing 833/852 atomic regions from SNP 249786 to 250386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,096 DEBUG Processing 658/1109 atomic regions from SNP 197226 to 197826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,253 DEBUG Processing 830/830 atomic regions from SNP 248753 to 249353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,299 DEBUG Processing 721/993 atomic regions from SNP 216034 to 216634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,323 DEBUG Processing 834/852 atomic regions from SNP 250086 to 250686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,395 DEBUG Unique SNPs positions in subchromosome 1: 249354 2025-01-31 09:45:13,401 DEBUG Processing 659/1109 atomic regions from SNP 197526 to 198126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,570 DEBUG Processing 722/993 atomic regions from SNP 216334 to 216934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,571 DEBUG Processing 835/852 atomic regions from SNP 250386 to 250986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,689 DEBUG Processing 660/1109 atomic regions from SNP 197826 to 198426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,876 DEBUG Processing 836/852 atomic regions from SNP 250686 to 251286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,917 DEBUG Processing 723/993 atomic regions from SNP 216634 to 217234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,016 DEBUG Processing 661/1109 atomic regions from SNP 198126 to 198726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,124 DEBUG Processing 837/852 atomic regions from SNP 250986 to 251586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,190 DEBUG Processing 724/993 atomic regions from SNP 216934 to 217534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,308 DEBUG Processing 662/1109 atomic regions from SNP 198426 to 199026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,370 DEBUG Processing 838/852 atomic regions from SNP 251286 to 251886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,463 DEBUG Processing 725/993 atomic regions from SNP 217234 to 217834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,611 DEBUG Processing 663/1109 atomic regions from SNP 198726 to 199326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,613 DEBUG Processing 839/852 atomic regions from SNP 251586 to 252186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,750 DEBUG Processing 726/993 atomic regions from SNP 217534 to 218134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,850 DEBUG Processing 840/852 atomic regions from SNP 251886 to 252486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,912 DEBUG Processing 664/1109 atomic regions from SNP 199026 to 199626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,034 DEBUG Processing 727/993 atomic regions from SNP 217834 to 218434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,091 DEBUG Processing 841/852 atomic regions from SNP 252186 to 252786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,185 DEBUG Processing 665/1109 atomic regions from SNP 199326 to 199926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,328 DEBUG Processing 728/993 atomic regions from SNP 218134 to 218734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,342 DEBUG Processing 842/852 atomic regions from SNP 252486 to 253086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,454 DEBUG Processing 666/1109 atomic regions from SNP 199626 to 200226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,585 DEBUG Processing 843/852 atomic regions from SNP 252786 to 253386 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,600 DEBUG Processing 729/993 atomic regions from SNP 218434 to 219034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,723 DEBUG Processing 667/1109 atomic regions from SNP 199926 to 200526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,825 DEBUG Processing 844/852 atomic regions from SNP 253086 to 253686 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,883 DEBUG Processing 730/993 atomic regions from SNP 218734 to 219334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,999 DEBUG Processing 668/1109 atomic regions from SNP 200226 to 200826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,067 DEBUG Processing 845/852 atomic regions from SNP 253386 to 253986 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,182 DEBUG Processing 731/993 atomic regions from SNP 219034 to 219634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,278 DEBUG Processing 669/1109 atomic regions from SNP 200526 to 201126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,306 DEBUG Processing 846/852 atomic regions from SNP 253686 to 254286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,472 DEBUG Processing 732/993 atomic regions from SNP 219334 to 219934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,552 DEBUG Processing 847/852 atomic regions from SNP 253986 to 254586 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,554 DEBUG Processing 670/1109 atomic regions from SNP 200826 to 201426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,729 DEBUG Processing 733/993 atomic regions from SNP 219634 to 220234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,793 DEBUG Processing 848/852 atomic regions from SNP 254286 to 254886 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,831 DEBUG Processing 671/1109 atomic regions from SNP 201126 to 201726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,016 DEBUG Processing 734/993 atomic regions from SNP 219934 to 220534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,081 DEBUG Processing 849/852 atomic regions from SNP 254586 to 255186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,155 DEBUG Processing 672/1109 atomic regions from SNP 201426 to 202026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,339 DEBUG Processing 735/993 atomic regions from SNP 220234 to 220834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,416 DEBUG Processing 850/852 atomic regions from SNP 254886 to 255486 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,554 DEBUG Processing 673/1109 atomic regions from SNP 201726 to 202326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,623 DEBUG Processing 736/993 atomic regions from SNP 220534 to 221134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,659 DEBUG Processing 851/852 atomic regions from SNP 255186 to 255786 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,881 DEBUG Processing 674/1109 atomic regions from SNP 202026 to 202626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,969 DEBUG Processing 737/993 atomic regions from SNP 220834 to 221434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,981 DEBUG Processing 852/852 atomic regions from SNP 255486 to 256086 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,142 DEBUG Unique SNPs positions in subchromosome 1: 256087 2025-01-31 09:45:18,192 DEBUG Processing 675/1109 atomic regions from SNP 202326 to 202926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,298 DEBUG Processing 738/993 atomic regions from SNP 221134 to 221734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,482 DEBUG Processing 676/1109 atomic regions from SNP 202626 to 203226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,582 DEBUG Processing 739/993 atomic regions from SNP 221434 to 222034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,659 DEBUG Subchromosome time: 210.15791302919388, subchromosome SNPs: 189167 2025-01-31 09:45:18,660 DEBUG Estimated BADs: [0.90, 1.81, 0.18, 0.60, 1.81, 0.45, 5.43, 3.62, 0.60, 1.81, 0.36, 1.81, 0.26, 0.90, 1.81, 3.62, 0.30, 0.90, 5.43, 3.62, 9.05, 5.43, 1.81, 5.43] SNP counts: [8515, 13220, 3576, 21694, 4001, 7817, 3017, 10994, 6273, 17435, 26739, 13520, 4778, 6911, 17821, 6523, 4703, 1889, 7497, 21578, 8153, 10910, 7342, 16101] SNP IDs counts: [8515, 13220, 3576, 21694, 4001, 7817, 3017, 10994, 6273, 17435, 26739, 13520, 4778, 6911, 17821, 6523, 4703, 1889, 7497, 21578, 8153, 10910, 7342, 16101] Critical gap: 699084bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.53Mbp, 16.27Mbp, 18.85Mbp, 32.65Mbp, 34.88Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 48.69Mbp, 52.73Mbp, 64.16Mbp, 81.79Mbp, 89.54Mbp, 92.68Mbp, 96.85Mbp, 106.78Mbp, 110.34Mbp, 113.85Mbp, 115.04Mbp, 119.22Mbp, 131.72Mbp, 136.01Mbp, 141.72Mbp, 147.84Mbp, 156.51Mbp] 2025-01-31 09:45:18,660 DEBUG chr4 time: 210.158558819443 s 2025-01-31 09:45:18,770 DEBUG Processing 677/1109 atomic regions from SNP 202926 to 203526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,831 DEBUG chr4: Fitting background model for 24 segments 2025-01-31 09:45:18,862 DEBUG Processing 740/993 atomic regions from SNP 221734 to 222334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,082 DEBUG Processing 678/1109 atomic regions from SNP 203226 to 203826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,170 DEBUG Processing 741/993 atomic regions from SNP 222034 to 222634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,469 DEBUG Processing 679/1109 atomic regions from SNP 203526 to 204126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,549 DEBUG Processing 742/993 atomic regions from SNP 222334 to 222934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,811 DEBUG Processing 680/1109 atomic regions from SNP 203826 to 204426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,852 DEBUG Processing 743/993 atomic regions from SNP 222634 to 223234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,199 DEBUG Processing 681/1109 atomic regions from SNP 204126 to 204726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,241 DEBUG Processing 744/993 atomic regions from SNP 222934 to 223534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,493 DEBUG Processing 682/1109 atomic regions from SNP 204426 to 205026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,523 DEBUG Processing 745/993 atomic regions from SNP 223234 to 223834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,776 DEBUG Processing 683/1109 atomic regions from SNP 204726 to 205326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,798 DEBUG Processing 746/993 atomic regions from SNP 223534 to 224134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,048 DEBUG Processing 684/1109 atomic regions from SNP 205026 to 205626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,069 DEBUG Processing 747/993 atomic regions from SNP 223834 to 224434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,316 DEBUG Processing 685/1109 atomic regions from SNP 205326 to 205926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,333 DEBUG Processing 748/993 atomic regions from SNP 224134 to 224734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,585 DEBUG Processing 686/1109 atomic regions from SNP 205626 to 206226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,601 DEBUG Processing 749/993 atomic regions from SNP 224434 to 225034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,861 DEBUG Processing 687/1109 atomic regions from SNP 205926 to 206526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,865 DEBUG Processing 750/993 atomic regions from SNP 224734 to 225334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,134 DEBUG Processing 751/993 atomic regions from SNP 225034 to 225634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,138 DEBUG Processing 688/1109 atomic regions from SNP 206226 to 206826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,400 DEBUG Processing 752/993 atomic regions from SNP 225334 to 225934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,418 DEBUG Processing 689/1109 atomic regions from SNP 206526 to 207126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,672 DEBUG Processing 753/993 atomic regions from SNP 225634 to 226234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,697 DEBUG Processing 690/1109 atomic regions from SNP 206826 to 207426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,939 DEBUG Processing 754/993 atomic regions from SNP 225934 to 226534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,971 DEBUG Processing 691/1109 atomic regions from SNP 207126 to 207726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,209 DEBUG Processing 755/993 atomic regions from SNP 226234 to 226834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,240 DEBUG Processing 692/1109 atomic regions from SNP 207426 to 208026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,480 DEBUG Processing 756/993 atomic regions from SNP 226534 to 227134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,510 DEBUG Processing 693/1109 atomic regions from SNP 207726 to 208326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,746 DEBUG Processing 757/993 atomic regions from SNP 226834 to 227434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,818 DEBUG Processing 694/1109 atomic regions from SNP 208026 to 208626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,011 DEBUG Processing 758/993 atomic regions from SNP 227134 to 227734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,101 DEBUG Processing 695/1109 atomic regions from SNP 208326 to 208926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,274 DEBUG Processing 759/993 atomic regions from SNP 227434 to 228034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,377 DEBUG Processing 696/1109 atomic regions from SNP 208626 to 209226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,541 DEBUG Processing 760/993 atomic regions from SNP 227734 to 228334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,649 DEBUG Processing 697/1109 atomic regions from SNP 208926 to 209526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,802 DEBUG Processing 761/993 atomic regions from SNP 228034 to 228634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,914 DEBUG Processing 698/1109 atomic regions from SNP 209226 to 209826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,066 DEBUG Processing 762/993 atomic regions from SNP 228334 to 228934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,179 DEBUG Processing 699/1109 atomic regions from SNP 209526 to 210126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,331 DEBUG Processing 763/993 atomic regions from SNP 228634 to 229234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,439 DEBUG Processing 700/1109 atomic regions from SNP 209826 to 210426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,594 DEBUG Processing 764/993 atomic regions from SNP 228934 to 229534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,700 DEBUG Processing 701/1109 atomic regions from SNP 210126 to 210726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,858 DEBUG Processing 765/993 atomic regions from SNP 229234 to 229834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,961 DEBUG Processing 702/1109 atomic regions from SNP 210426 to 211026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,123 DEBUG Processing 766/993 atomic regions from SNP 229534 to 230134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,228 DEBUG Processing 703/1109 atomic regions from SNP 210726 to 211326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,391 DEBUG Processing 767/993 atomic regions from SNP 229834 to 230434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,506 DEBUG Processing 704/1109 atomic regions from SNP 211026 to 211626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,665 DEBUG Processing 768/993 atomic regions from SNP 230134 to 230734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,778 DEBUG Processing 705/1109 atomic regions from SNP 211326 to 211926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,928 DEBUG Processing 769/993 atomic regions from SNP 230434 to 231034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,050 DEBUG Processing 706/1109 atomic regions from SNP 211626 to 212226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,193 DEBUG Processing 770/993 atomic regions from SNP 230734 to 231334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,318 DEBUG Processing 707/1109 atomic regions from SNP 211926 to 212526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,461 DEBUG Processing 771/993 atomic regions from SNP 231034 to 231634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,595 DEBUG Processing 708/1109 atomic regions from SNP 212226 to 212826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,721 DEBUG Processing 772/993 atomic regions from SNP 231334 to 231934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,883 DEBUG Processing 709/1109 atomic regions from SNP 212526 to 213126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,980 DEBUG Processing 773/993 atomic regions from SNP 231634 to 232234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,174 DEBUG Processing 710/1109 atomic regions from SNP 212826 to 213426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,240 DEBUG Processing 774/993 atomic regions from SNP 231934 to 232534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,468 DEBUG Processing 711/1109 atomic regions from SNP 213126 to 213726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,500 DEBUG Processing 775/993 atomic regions from SNP 232234 to 232834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,769 DEBUG Processing 776/993 atomic regions from SNP 232534 to 233134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,776 DEBUG Processing 712/1109 atomic regions from SNP 213426 to 214026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,040 DEBUG Processing 777/993 atomic regions from SNP 232834 to 233434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,078 DEBUG Processing 713/1109 atomic regions from SNP 213726 to 214326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,176 DEBUG Subchromosome time: 276.5963643975556, subchromosome SNPs: 256087 2025-01-31 09:45:29,176 DEBUG Estimated BADs: [0.62, 3.70, 0.92, 3.70, 0.92, 1.85, 0.62, 16.64, 1.85, 0.92, 5.55, 16.64, 1.85, 16.64, 5.55, 12.94, 3.70, 0.62, 3.70, 0.92, 3.70, 0.26, 1.85, 0.26, 1.85, 0.62] SNP counts: [8941, 2316, 13162, 1539, 13293, 23116, 10879, 1124, 29760, 24097, 7060, 4799, 5722, 3884, 19515, 2329, 3355, 6565, 5424, 5680, 32102, 3289, 8461, 6852, 5418, 7405] SNP IDs counts: [8941, 2316, 13162, 1539, 13293, 23116, 10879, 1124, 29760, 24097, 7060, 4799, 5722, 3884, 19515, 2329, 3355, 6565, 5424, 5680, 32102, 3289, 8461, 6852, 5418, 7405] Critical gap: 712468bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.88Mbp, 10.19Mbp, 19.16Mbp, 20.03Mbp, 28.39Mbp, 42.29Mbp, 51.06Mbp, 51.66Mbp, 69.12Mbp, 84.01Mbp, 87.79Mbp, 90.36Mbp, 94.31Mbp, 96.48Mbp, 107.33Mbp, 108.55Mbp, 110.43Mbp, 114.87Mbp, 117.88Mbp, 121.16Mbp, 139.19Mbp, 141.98Mbp, 146.92Mbp, 151.76Mbp, 154.75Mbp, 160.04Mbp] 2025-01-31 09:45:29,177 DEBUG chr3 time: 276.5970724225044 s 2025-01-31 09:45:29,343 DEBUG Processing 778/993 atomic regions from SNP 233134 to 233734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,450 DEBUG chr3: Fitting background model for 26 segments 2025-01-31 09:45:29,456 DEBUG Processing 714/1109 atomic regions from SNP 214026 to 214626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,686 DEBUG Processing 779/993 atomic regions from SNP 233434 to 234034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,847 DEBUG Processing 715/1109 atomic regions from SNP 214326 to 214926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,055 DEBUG Processing 780/993 atomic regions from SNP 233734 to 234334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,245 DEBUG Processing 716/1109 atomic regions from SNP 214626 to 215226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,439 DEBUG Processing 781/993 atomic regions from SNP 234034 to 234634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,630 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:45:30,632 DEBUG chr6: Signal quantile: 0.993. signal threshold: 12. Best RMSEA: 0.020 2025-01-31 09:45:30,692 DEBUG Processing 717/1109 atomic regions from SNP 214926 to 215526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,796 DEBUG Processing 782/993 atomic regions from SNP 234334 to 234934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,979 DEBUG Processing 718/1109 atomic regions from SNP 215226 to 215826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,087 DEBUG Processing 783/993 atomic regions from SNP 234634 to 235234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,266 DEBUG Processing 719/1109 atomic regions from SNP 215526 to 216126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,359 DEBUG Processing 784/993 atomic regions from SNP 234934 to 235534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,545 DEBUG Processing 720/1109 atomic regions from SNP 215826 to 216426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,675 DEBUG Processing 785/993 atomic regions from SNP 235234 to 235834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,867 DEBUG Processing 721/1109 atomic regions from SNP 216126 to 216726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,988 DEBUG Processing 786/993 atomic regions from SNP 235534 to 236134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,129 DEBUG Subchromosome time: 278.5226942412555, subchromosome SNPs: 249354 2025-01-31 09:45:32,129 DEBUG Estimated BADs: [0.55, 1.64, 4.91, 1.64, 8.18, 3.27, 0.41, 0.82, 0.41, 1.64, 0.20, 1.64, 0.27, 1.64, 0.33, 1.64, 0.55, 1.64, 3.27, 8.18, 3.27, 6.54, 1.64, 8.18, 1.64, 4.91, 3.27] SNP counts: [25867, 4389, 3896, 8328, 1579, 14589, 5386, 6006, 8104, 5996, 13173, 9315, 3914, 12007, 15295, 12907, 4176, 6584, 17849, 3493, 8585, 10006, 7892, 712, 7336, 18305, 13665] SNP IDs counts: [25867, 4389, 3896, 8328, 1579, 14589, 5386, 6006, 8104, 5996, 13173, 9315, 3914, 12007, 15295, 12907, 4176, 6584, 17849, 3493, 8585, 10006, 7892, 712, 7336, 18305, 13665] Critical gap: 684230bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 20.87Mbp, 23.39Mbp, 25.50Mbp, 30.41Mbp, 31.24Mbp, 39.14Mbp, 42.54Mbp, 46.08Mbp, 51.08Mbp, 54.35Mbp, 63.41Mbp, 68.58Mbp, 71.24Mbp, 77.94Mbp, 88.04Mbp, 97.63Mbp, 99.97Mbp, 103.65Mbp, 113.72Mbp, 115.56Mbp, 120.09Mbp, 125.43Mbp, 129.71Mbp, 130.14Mbp, 134.14Mbp, 144.09Mbp, 151.83Mbp] 2025-01-31 09:45:32,129 DEBUG chr5 time: 278.52324033901095 s 2025-01-31 09:45:32,211 DEBUG Processing 722/1109 atomic regions from SNP 216426 to 217026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,315 DEBUG Processing 787/993 atomic regions from SNP 235834 to 236434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,387 DEBUG chr5: Fitting background model for 27 segments 2025-01-31 09:45:32,613 DEBUG Processing 723/1109 atomic regions from SNP 216726 to 217326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,682 DEBUG Processing 788/993 atomic regions from SNP 236134 to 236734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,934 DEBUG Processing 724/1109 atomic regions from SNP 217026 to 217626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,966 DEBUG Processing 789/993 atomic regions from SNP 236434 to 237034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,242 DEBUG Processing 725/1109 atomic regions from SNP 217326 to 217926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,252 DEBUG Processing 790/993 atomic regions from SNP 236734 to 237334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,531 DEBUG Processing 791/993 atomic regions from SNP 237034 to 237634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,552 DEBUG Processing 726/1109 atomic regions from SNP 217626 to 218226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,812 DEBUG Processing 792/993 atomic regions from SNP 237334 to 237934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,846 DEBUG Processing 727/1109 atomic regions from SNP 217926 to 218526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,089 DEBUG chr6 total SNP count: 247891 2025-01-31 09:45:34,089 DEBUG chr6 length: 149736546 2025-01-31 09:45:34,089 DEBUG ----------------------------------------- 2025-01-31 09:45:34,089 INFO Processing SNPs in chr6 2025-01-31 09:45:34,096 DEBUG Processing 793/993 atomic regions from SNP 237634 to 238234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,164 DEBUG Processing 728/1109 atomic regions from SNP 218226 to 218826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,352 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 247891)] 2025-01-31 09:45:34,370 DEBUG Processing 794/993 atomic regions from SNP 237934 to 238534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,468 DEBUG Processing 729/1109 atomic regions from SNP 218526 to 219126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,528 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:34,650 DEBUG Processing 795/993 atomic regions from SNP 238234 to 238834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,756 DEBUG Processing 730/1109 atomic regions from SNP 218826 to 219426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,923 DEBUG Processing 796/993 atomic regions from SNP 238534 to 239134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,048 DEBUG Processing 731/1109 atomic regions from SNP 219126 to 219726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,193 DEBUG Processing 797/993 atomic regions from SNP 238834 to 239434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,318 DEBUG Processing 732/1109 atomic regions from SNP 219426 to 220026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,463 DEBUG Processing 798/993 atomic regions from SNP 239134 to 239734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,602 DEBUG Processing 733/1109 atomic regions from SNP 219726 to 220326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,733 DEBUG Processing 799/993 atomic regions from SNP 239434 to 240034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,905 DEBUG Processing 734/1109 atomic regions from SNP 220026 to 220626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,998 DEBUG Processing 800/993 atomic regions from SNP 239734 to 240334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,209 DEBUG Processing 735/1109 atomic regions from SNP 220326 to 220926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,258 DEBUG Processing 801/993 atomic regions from SNP 240034 to 240634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,516 DEBUG Processing 736/1109 atomic regions from SNP 220626 to 221226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,520 DEBUG Processing 802/993 atomic regions from SNP 240334 to 240934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,781 DEBUG Processing 803/993 atomic regions from SNP 240634 to 241234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,814 DEBUG Processing 737/1109 atomic regions from SNP 220926 to 221526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,041 DEBUG Processing 804/993 atomic regions from SNP 240934 to 241534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,095 DEBUG Processing 738/1109 atomic regions from SNP 221226 to 221826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,303 DEBUG Processing 805/993 atomic regions from SNP 241234 to 241834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,365 DEBUG Processing 739/1109 atomic regions from SNP 221526 to 222126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,590 DEBUG Processing 806/993 atomic regions from SNP 241534 to 242134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,651 DEBUG Processing 740/1109 atomic regions from SNP 221826 to 222426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,857 DEBUG Processing 807/993 atomic regions from SNP 241834 to 242434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,963 DEBUG Processing 741/1109 atomic regions from SNP 222126 to 222726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,132 DEBUG Processing 808/993 atomic regions from SNP 242134 to 242734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,251 DEBUG Processing 742/1109 atomic regions from SNP 222426 to 223026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,408 DEBUG Processing 809/993 atomic regions from SNP 242434 to 243034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,530 DEBUG Processing 743/1109 atomic regions from SNP 222726 to 223326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,689 DEBUG Processing 810/993 atomic regions from SNP 242734 to 243334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,813 DEBUG Processing 744/1109 atomic regions from SNP 223026 to 223626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,963 DEBUG Processing 811/993 atomic regions from SNP 243034 to 243634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,112 DEBUG Processing 745/1109 atomic regions from SNP 223326 to 223926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,237 DEBUG Processing 812/993 atomic regions from SNP 243334 to 243934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,420 DEBUG Processing 746/1109 atomic regions from SNP 223626 to 224226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,502 DEBUG Processing 813/993 atomic regions from SNP 243634 to 244234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,739 DEBUG Processing 747/1109 atomic regions from SNP 223926 to 224526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,767 DEBUG Processing 814/993 atomic regions from SNP 243934 to 244534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,028 DEBUG Processing 815/993 atomic regions from SNP 244234 to 244834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,047 DEBUG Processing 748/1109 atomic regions from SNP 224226 to 224826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,295 DEBUG Processing 816/993 atomic regions from SNP 244534 to 245134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,359 DEBUG Processing 749/1109 atomic regions from SNP 224526 to 225126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,569 DEBUG Processing 817/993 atomic regions from SNP 244834 to 245434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,680 DEBUG Processing 750/1109 atomic regions from SNP 224826 to 225426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,850 DEBUG Processing 818/993 atomic regions from SNP 245134 to 245734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,971 DEBUG Processing 751/1109 atomic regions from SNP 225126 to 225726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,134 DEBUG Processing 819/993 atomic regions from SNP 245434 to 246034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,264 DEBUG Processing 752/1109 atomic regions from SNP 225426 to 226026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,414 DEBUG Processing 820/993 atomic regions from SNP 245734 to 246334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,567 DEBUG Processing 753/1109 atomic regions from SNP 225726 to 226326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,693 DEBUG Processing 821/993 atomic regions from SNP 246034 to 246634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,873 DEBUG Processing 754/1109 atomic regions from SNP 226026 to 226626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,972 DEBUG Processing 822/993 atomic regions from SNP 246334 to 246934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,165 DEBUG Processing 755/1109 atomic regions from SNP 226326 to 226926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,250 DEBUG Processing 823/993 atomic regions from SNP 246634 to 247234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,445 DEBUG Processing 756/1109 atomic regions from SNP 226626 to 227226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,525 DEBUG Processing 824/993 atomic regions from SNP 246934 to 247534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,745 DEBUG Processing 757/1109 atomic regions from SNP 226926 to 227526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,807 DEBUG Processing 825/993 atomic regions from SNP 247234 to 247834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,056 DEBUG Processing 758/1109 atomic regions from SNP 227226 to 227826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,066 DEBUG Processing 826/993 atomic regions from SNP 247534 to 248134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,331 DEBUG Processing 827/993 atomic regions from SNP 247834 to 248434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,374 DEBUG Processing 759/1109 atomic regions from SNP 227526 to 228126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,596 DEBUG Processing 828/993 atomic regions from SNP 248134 to 248734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,685 DEBUG Processing 760/1109 atomic regions from SNP 227826 to 228426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,862 DEBUG Processing 829/993 atomic regions from SNP 248434 to 249034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,977 DEBUG Processing 761/1109 atomic regions from SNP 228126 to 228726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,136 DEBUG Processing 830/993 atomic regions from SNP 248734 to 249334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,272 DEBUG Processing 762/1109 atomic regions from SNP 228426 to 229026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,410 DEBUG Processing 831/993 atomic regions from SNP 249034 to 249634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,569 DEBUG Processing 763/1109 atomic regions from SNP 228726 to 229326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,686 DEBUG Processing 832/993 atomic regions from SNP 249334 to 249934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,868 DEBUG Processing 764/1109 atomic regions from SNP 229026 to 229626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,959 DEBUG Processing 833/993 atomic regions from SNP 249634 to 250234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,148 DEBUG Processing 765/1109 atomic regions from SNP 229326 to 229926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,238 DEBUG Processing 834/993 atomic regions from SNP 249934 to 250534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,417 DEBUG Processing 766/1109 atomic regions from SNP 229626 to 230226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,518 DEBUG Processing 835/993 atomic regions from SNP 250234 to 250834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,688 DEBUG Processing 767/1109 atomic regions from SNP 229926 to 230526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,796 DEBUG Processing 836/993 atomic regions from SNP 250534 to 251134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,956 DEBUG Processing 768/1109 atomic regions from SNP 230226 to 230826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,073 DEBUG Processing 837/993 atomic regions from SNP 250834 to 251434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,218 DEBUG Processing 769/1109 atomic regions from SNP 230526 to 231126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,347 DEBUG Processing 838/993 atomic regions from SNP 251134 to 251734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,483 DEBUG Processing 770/1109 atomic regions from SNP 230826 to 231426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,616 DEBUG Processing 839/993 atomic regions from SNP 251434 to 252034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,749 DEBUG Processing 771/1109 atomic regions from SNP 231126 to 231726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,879 DEBUG Processing 840/993 atomic regions from SNP 251734 to 252334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,018 DEBUG Processing 772/1109 atomic regions from SNP 231426 to 232026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,145 DEBUG Processing 841/993 atomic regions from SNP 252034 to 252634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,288 DEBUG Processing 773/1109 atomic regions from SNP 231726 to 232326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,416 DEBUG Processing 842/993 atomic regions from SNP 252334 to 252934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,558 DEBUG Processing 774/1109 atomic regions from SNP 232026 to 232626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,692 DEBUG Processing 843/993 atomic regions from SNP 252634 to 253234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,833 DEBUG Processing 775/1109 atomic regions from SNP 232326 to 232926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,974 DEBUG Processing 844/993 atomic regions from SNP 252934 to 253534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,118 DEBUG Processing 776/1109 atomic regions from SNP 232626 to 233226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,253 DEBUG Processing 845/993 atomic regions from SNP 253234 to 253834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,412 DEBUG Processing 777/1109 atomic regions from SNP 232926 to 233526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,538 DEBUG Processing 846/993 atomic regions from SNP 253534 to 254134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,693 DEBUG Processing 778/1109 atomic regions from SNP 233226 to 233826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,828 DEBUG Processing 847/993 atomic regions from SNP 253834 to 254434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,974 DEBUG Processing 779/1109 atomic regions from SNP 233526 to 234126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,104 DEBUG Processing 848/993 atomic regions from SNP 254134 to 254734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,256 DEBUG Processing 780/1109 atomic regions from SNP 233826 to 234426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,382 DEBUG Processing 849/993 atomic regions from SNP 254434 to 255034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,537 DEBUG Processing 781/1109 atomic regions from SNP 234126 to 234726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,656 DEBUG Processing 850/993 atomic regions from SNP 254734 to 255334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,826 DEBUG Processing 782/1109 atomic regions from SNP 234426 to 235026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,927 DEBUG Processing 851/993 atomic regions from SNP 255034 to 255634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,114 DEBUG Processing 783/1109 atomic regions from SNP 234726 to 235326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,216 DEBUG Processing 852/993 atomic regions from SNP 255334 to 255934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,403 DEBUG Processing 784/1109 atomic regions from SNP 235026 to 235626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,511 DEBUG Processing 853/993 atomic regions from SNP 255634 to 256234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,686 DEBUG Processing 785/1109 atomic regions from SNP 235326 to 235926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,820 DEBUG Processing 854/993 atomic regions from SNP 255934 to 256534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,970 DEBUG Processing 786/1109 atomic regions from SNP 235626 to 236226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,094 DEBUG Processing 855/993 atomic regions from SNP 256234 to 256834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,254 DEBUG Processing 787/1109 atomic regions from SNP 235926 to 236526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,384 DEBUG Processing 856/993 atomic regions from SNP 256534 to 257134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,539 DEBUG Processing 788/1109 atomic regions from SNP 236226 to 236826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,685 DEBUG Processing 857/993 atomic regions from SNP 256834 to 257434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,817 DEBUG Processing 789/1109 atomic regions from SNP 236526 to 237126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,966 DEBUG Processing 858/993 atomic regions from SNP 257134 to 257734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,095 DEBUG Processing 790/1109 atomic regions from SNP 236826 to 237426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,253 DEBUG Processing 859/993 atomic regions from SNP 257434 to 258034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,375 DEBUG Processing 791/1109 atomic regions from SNP 237126 to 237726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,544 DEBUG Processing 860/993 atomic regions from SNP 257734 to 258334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,655 DEBUG Processing 792/1109 atomic regions from SNP 237426 to 238026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,846 DEBUG Processing 861/993 atomic regions from SNP 258034 to 258634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,943 DEBUG Processing 793/1109 atomic regions from SNP 237726 to 238326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,147 DEBUG Processing 862/993 atomic regions from SNP 258334 to 258934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,231 DEBUG Processing 794/1109 atomic regions from SNP 238026 to 238626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,423 DEBUG Processing 863/993 atomic regions from SNP 258634 to 259234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,519 DEBUG Processing 795/1109 atomic regions from SNP 238326 to 238926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,692 DEBUG Processing 864/993 atomic regions from SNP 258934 to 259534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,810 DEBUG Processing 796/1109 atomic regions from SNP 238626 to 239226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,956 DEBUG Processing 865/993 atomic regions from SNP 259234 to 259834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,102 DEBUG Processing 797/1109 atomic regions from SNP 238926 to 239526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,225 DEBUG Processing 866/993 atomic regions from SNP 259534 to 260134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,388 DEBUG Processing 798/1109 atomic regions from SNP 239226 to 239826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,512 DEBUG Processing 867/993 atomic regions from SNP 259834 to 260434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,667 DEBUG Processing 799/1109 atomic regions from SNP 239526 to 240126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,813 DEBUG Processing 868/993 atomic regions from SNP 260134 to 260734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,961 DEBUG Processing 800/1109 atomic regions from SNP 239826 to 240426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,092 DEBUG Processing 869/993 atomic regions from SNP 260434 to 261034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,241 DEBUG Processing 801/1109 atomic regions from SNP 240126 to 240726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,361 DEBUG Processing 870/993 atomic regions from SNP 260734 to 261334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,536 DEBUG Processing 802/1109 atomic regions from SNP 240426 to 241026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,635 DEBUG Processing 871/993 atomic regions from SNP 261034 to 261634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,836 DEBUG Processing 803/1109 atomic regions from SNP 240726 to 241326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,900 DEBUG Processing 872/993 atomic regions from SNP 261334 to 261934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,106 DEBUG Processing 804/1109 atomic regions from SNP 241026 to 241626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,172 DEBUG Processing 873/993 atomic regions from SNP 261634 to 262234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,381 DEBUG Processing 805/1109 atomic regions from SNP 241326 to 241926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,467 DEBUG Processing 874/993 atomic regions from SNP 261934 to 262534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,662 DEBUG Processing 806/1109 atomic regions from SNP 241626 to 242226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,755 DEBUG Processing 875/993 atomic regions from SNP 262234 to 262834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,940 DEBUG Processing 807/1109 atomic regions from SNP 241926 to 242526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,034 DEBUG Processing 876/993 atomic regions from SNP 262534 to 263134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,217 DEBUG Processing 808/1109 atomic regions from SNP 242226 to 242826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,320 DEBUG Processing 877/993 atomic regions from SNP 262834 to 263434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,494 DEBUG Processing 809/1109 atomic regions from SNP 242526 to 243126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,611 DEBUG Processing 878/993 atomic regions from SNP 263134 to 263734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,768 DEBUG Processing 810/1109 atomic regions from SNP 242826 to 243426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,879 DEBUG Processing 879/993 atomic regions from SNP 263434 to 264034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,060 DEBUG Processing 811/1109 atomic regions from SNP 243126 to 243726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,152 DEBUG Processing 880/993 atomic regions from SNP 263734 to 264334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,344 DEBUG Processing 812/1109 atomic regions from SNP 243426 to 244026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,438 DEBUG Processing 881/993 atomic regions from SNP 264034 to 264634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,630 DEBUG Processing 813/1109 atomic regions from SNP 243726 to 244326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,729 DEBUG Processing 882/993 atomic regions from SNP 264334 to 264934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,931 DEBUG Processing 814/1109 atomic regions from SNP 244026 to 244626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,010 DEBUG Processing 883/993 atomic regions from SNP 264634 to 265234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,221 DEBUG Processing 815/1109 atomic regions from SNP 244326 to 244926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,289 DEBUG Processing 884/993 atomic regions from SNP 264934 to 265534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,507 DEBUG Processing 816/1109 atomic regions from SNP 244626 to 245226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,571 DEBUG Processing 885/993 atomic regions from SNP 265234 to 265834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,793 DEBUG Processing 817/1109 atomic regions from SNP 244926 to 245526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,861 DEBUG Processing 886/993 atomic regions from SNP 265534 to 266134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,083 DEBUG Processing 818/1109 atomic regions from SNP 245226 to 245826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,128 DEBUG Processing 887/993 atomic regions from SNP 265834 to 266434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,368 DEBUG Processing 819/1109 atomic regions from SNP 245526 to 246126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,401 DEBUG Processing 888/993 atomic regions from SNP 266134 to 266734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,643 DEBUG Processing 820/1109 atomic regions from SNP 245826 to 246426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,665 DEBUG Processing 889/993 atomic regions from SNP 266434 to 267034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,915 DEBUG Processing 821/1109 atomic regions from SNP 246126 to 246726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,943 DEBUG Processing 890/993 atomic regions from SNP 266734 to 267334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,191 DEBUG Processing 822/1109 atomic regions from SNP 246426 to 247026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,219 DEBUG Processing 891/993 atomic regions from SNP 267034 to 267634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,466 DEBUG Processing 823/1109 atomic regions from SNP 246726 to 247326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,488 DEBUG Processing 892/993 atomic regions from SNP 267334 to 267934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,742 DEBUG Processing 824/1109 atomic regions from SNP 247026 to 247626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,769 DEBUG Processing 893/993 atomic regions from SNP 267634 to 268234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,014 DEBUG Processing 825/1109 atomic regions from SNP 247326 to 247926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,053 DEBUG Processing 894/993 atomic regions from SNP 267934 to 268534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,283 DEBUG Processing 826/1109 atomic regions from SNP 247626 to 248226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,322 DEBUG Processing 895/993 atomic regions from SNP 268234 to 268834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,556 DEBUG Processing 827/1109 atomic regions from SNP 247926 to 248526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,593 DEBUG Processing 896/993 atomic regions from SNP 268534 to 269134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,837 DEBUG Processing 828/1109 atomic regions from SNP 248226 to 248826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,865 DEBUG Processing 897/993 atomic regions from SNP 268834 to 269434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,134 DEBUG Processing 829/1109 atomic regions from SNP 248526 to 249126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,151 DEBUG Processing 898/993 atomic regions from SNP 269134 to 269734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,422 DEBUG Processing 899/993 atomic regions from SNP 269434 to 270034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,422 DEBUG Processing 830/1109 atomic regions from SNP 248826 to 249426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,697 DEBUG Processing 900/993 atomic regions from SNP 269734 to 270334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,708 DEBUG Processing 831/1109 atomic regions from SNP 249126 to 249726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,973 DEBUG Processing 901/993 atomic regions from SNP 270034 to 270634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,987 DEBUG Processing 832/1109 atomic regions from SNP 249426 to 250026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,249 DEBUG Processing 902/993 atomic regions from SNP 270334 to 270934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,260 DEBUG Processing 833/1109 atomic regions from SNP 249726 to 250326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,523 DEBUG Processing 903/993 atomic regions from SNP 270634 to 271234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,535 DEBUG Processing 834/1109 atomic regions from SNP 250026 to 250626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,798 DEBUG Processing 904/993 atomic regions from SNP 270934 to 271534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,814 DEBUG Processing 835/1109 atomic regions from SNP 250326 to 250926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,077 DEBUG Processing 905/993 atomic regions from SNP 271234 to 271834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,100 DEBUG Processing 836/1109 atomic regions from SNP 250626 to 251226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,267 DEBUG Segmenting atomic regions: 2025-01-31 09:46:05,360 DEBUG Processing 906/993 atomic regions from SNP 271534 to 272134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,380 DEBUG Processing 1/825 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,390 DEBUG Processing 837/1109 atomic regions from SNP 250926 to 251526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,632 DEBUG Processing 2/825 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,636 DEBUG Processing 907/993 atomic regions from SNP 271834 to 272434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,683 DEBUG Processing 838/1109 atomic regions from SNP 251226 to 251826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,881 DEBUG Processing 3/825 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:05,913 DEBUG Processing 908/993 atomic regions from SNP 272134 to 272734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,974 DEBUG Processing 839/1109 atomic regions from SNP 251526 to 252126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,120 DEBUG Processing 4/825 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,191 DEBUG Processing 909/993 atomic regions from SNP 272434 to 273034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,270 DEBUG Processing 840/1109 atomic regions from SNP 251826 to 252426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,350 DEBUG Processing 5/825 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,468 DEBUG Processing 910/993 atomic regions from SNP 272734 to 273334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,575 DEBUG Processing 841/1109 atomic regions from SNP 252126 to 252726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,587 DEBUG Processing 6/825 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,745 DEBUG Processing 911/993 atomic regions from SNP 273034 to 273634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,830 DEBUG Processing 7/825 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:06,881 DEBUG Processing 842/1109 atomic regions from SNP 252426 to 253026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,024 DEBUG Processing 912/993 atomic regions from SNP 273334 to 273934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,077 DEBUG Processing 8/825 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,181 DEBUG Processing 843/1109 atomic regions from SNP 252726 to 253326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,297 DEBUG Processing 913/993 atomic regions from SNP 273634 to 274234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,316 DEBUG Processing 9/825 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,476 DEBUG Processing 844/1109 atomic regions from SNP 253026 to 253626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,553 DEBUG Processing 10/825 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,570 DEBUG Processing 914/993 atomic regions from SNP 273934 to 274534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,769 DEBUG Processing 845/1109 atomic regions from SNP 253326 to 253926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,790 DEBUG Processing 11/825 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:07,836 DEBUG Processing 915/993 atomic regions from SNP 274234 to 274834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,044 DEBUG Processing 12/825 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,068 DEBUG Processing 846/1109 atomic regions from SNP 253626 to 254226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,101 DEBUG Processing 916/993 atomic regions from SNP 274534 to 275134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,319 DEBUG Processing 13/825 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,361 DEBUG Processing 847/1109 atomic regions from SNP 253926 to 254526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,371 DEBUG Processing 917/993 atomic regions from SNP 274834 to 275434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,582 DEBUG Processing 14/825 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,644 DEBUG Processing 918/993 atomic regions from SNP 275134 to 275734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,651 DEBUG Processing 848/1109 atomic regions from SNP 254226 to 254826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,831 DEBUG Processing 15/825 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:08,917 DEBUG Processing 919/993 atomic regions from SNP 275434 to 276034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,941 DEBUG Processing 849/1109 atomic regions from SNP 254526 to 255126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,076 DEBUG Processing 16/825 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,197 DEBUG Processing 920/993 atomic regions from SNP 275734 to 276334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,226 DEBUG Processing 850/1109 atomic regions from SNP 254826 to 255426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,323 DEBUG Processing 17/825 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,471 DEBUG Processing 921/993 atomic regions from SNP 276034 to 276634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,506 DEBUG Processing 851/1109 atomic regions from SNP 255126 to 255726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,570 DEBUG Processing 18/825 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:09,766 DEBUG Processing 922/993 atomic regions from SNP 276334 to 276934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,787 DEBUG Processing 852/1109 atomic regions from SNP 255426 to 256026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,820 DEBUG Processing 19/825 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,052 DEBUG Processing 923/993 atomic regions from SNP 276634 to 277234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,066 DEBUG Processing 20/825 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,069 DEBUG Processing 853/1109 atomic regions from SNP 255726 to 256326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,305 DEBUG Processing 21/825 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,348 DEBUG Processing 924/993 atomic regions from SNP 276934 to 277534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,350 DEBUG Processing 854/1109 atomic regions from SNP 256026 to 256626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,547 DEBUG Processing 22/825 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,622 DEBUG Processing 925/993 atomic regions from SNP 277234 to 277834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,635 DEBUG Processing 855/1109 atomic regions from SNP 256326 to 256926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,786 DEBUG Processing 23/825 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:10,897 DEBUG Processing 926/993 atomic regions from SNP 277534 to 278134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,922 DEBUG Processing 856/1109 atomic regions from SNP 256626 to 257226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,028 DEBUG Processing 24/825 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,172 DEBUG Processing 927/993 atomic regions from SNP 277834 to 278434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,218 DEBUG Processing 857/1109 atomic regions from SNP 256926 to 257526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,271 DEBUG Processing 25/825 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,448 DEBUG Processing 928/993 atomic regions from SNP 278134 to 278734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,509 DEBUG Processing 858/1109 atomic regions from SNP 257226 to 257826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,518 DEBUG Processing 26/825 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,727 DEBUG Processing 929/993 atomic regions from SNP 278434 to 279034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,773 DEBUG Processing 27/825 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:11,796 DEBUG Processing 859/1109 atomic regions from SNP 257526 to 258126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,015 DEBUG Processing 930/993 atomic regions from SNP 278734 to 279334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,024 DEBUG Processing 28/825 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,084 DEBUG Processing 860/1109 atomic regions from SNP 257826 to 258426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,277 DEBUG Processing 29/825 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,334 DEBUG Processing 931/993 atomic regions from SNP 279034 to 279634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,370 DEBUG Processing 861/1109 atomic regions from SNP 258126 to 258726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,533 DEBUG Processing 30/825 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,634 DEBUG Processing 932/993 atomic regions from SNP 279334 to 279934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,655 DEBUG Processing 862/1109 atomic regions from SNP 258426 to 259026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,794 DEBUG Processing 31/825 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:12,912 DEBUG Processing 933/993 atomic regions from SNP 279634 to 280234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,944 DEBUG Processing 863/1109 atomic regions from SNP 258726 to 259326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,063 DEBUG Processing 32/825 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,201 DEBUG Processing 934/993 atomic regions from SNP 279934 to 280534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,245 DEBUG Processing 864/1109 atomic regions from SNP 259026 to 259626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,305 DEBUG Processing 33/825 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,488 DEBUG Processing 935/993 atomic regions from SNP 280234 to 280834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,541 DEBUG Processing 865/1109 atomic regions from SNP 259326 to 259926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,553 DEBUG Processing 34/825 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,771 DEBUG Processing 936/993 atomic regions from SNP 280534 to 281134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,809 DEBUG Processing 35/825 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:13,869 DEBUG Processing 866/1109 atomic regions from SNP 259626 to 260226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,060 DEBUG Processing 937/993 atomic regions from SNP 280834 to 281434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,066 DEBUG Processing 36/825 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,194 DEBUG Processing 867/1109 atomic regions from SNP 259926 to 260526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,318 DEBUG Processing 37/825 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,370 DEBUG Processing 938/993 atomic regions from SNP 281134 to 281734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,491 DEBUG Processing 868/1109 atomic regions from SNP 260226 to 260826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,572 DEBUG Processing 38/825 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,666 DEBUG Processing 939/993 atomic regions from SNP 281434 to 282034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,783 DEBUG Processing 869/1109 atomic regions from SNP 260526 to 261126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,819 DEBUG Processing 39/825 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:14,946 DEBUG Processing 940/993 atomic regions from SNP 281734 to 282334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,068 DEBUG Processing 40/825 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,074 DEBUG Processing 870/1109 atomic regions from SNP 260826 to 261426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,220 DEBUG Processing 941/993 atomic regions from SNP 282034 to 282634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,320 DEBUG Processing 41/825 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,375 DEBUG Processing 871/1109 atomic regions from SNP 261126 to 261726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,498 DEBUG Processing 942/993 atomic regions from SNP 282334 to 282934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,562 DEBUG Processing 42/825 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:15,690 DEBUG Processing 872/1109 atomic regions from SNP 261426 to 262026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,780 DEBUG Processing 943/993 atomic regions from SNP 282634 to 283234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,805 DEBUG Processing 43/825 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,021 DEBUG Processing 873/1109 atomic regions from SNP 261726 to 262326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,056 DEBUG Processing 44/825 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,066 DEBUG Processing 944/993 atomic regions from SNP 282934 to 283534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,312 DEBUG Processing 45/825 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,335 DEBUG Processing 874/1109 atomic regions from SNP 262026 to 262626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,374 DEBUG Processing 945/993 atomic regions from SNP 283234 to 283834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,572 DEBUG Processing 46/825 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,653 DEBUG Processing 875/1109 atomic regions from SNP 262326 to 262926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,666 DEBUG Processing 946/993 atomic regions from SNP 283534 to 284134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,829 DEBUG Processing 47/825 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:16,972 DEBUG Processing 947/993 atomic regions from SNP 283834 to 284434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,975 DEBUG Processing 876/1109 atomic regions from SNP 262626 to 263226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,077 DEBUG Processing 48/825 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,276 DEBUG Processing 948/993 atomic regions from SNP 284134 to 284734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,289 DEBUG Processing 877/1109 atomic regions from SNP 262926 to 263526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,324 DEBUG Processing 49/825 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,565 DEBUG Processing 50/825 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,584 DEBUG Processing 949/993 atomic regions from SNP 284434 to 285034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,591 DEBUG Processing 878/1109 atomic regions from SNP 263226 to 263826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,814 DEBUG Processing 51/825 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:17,880 DEBUG Processing 950/993 atomic regions from SNP 284734 to 285334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,896 DEBUG Processing 879/1109 atomic regions from SNP 263526 to 264126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,068 DEBUG Processing 52/825 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,177 DEBUG Processing 951/993 atomic regions from SNP 285034 to 285634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,186 DEBUG Processing 880/1109 atomic regions from SNP 263826 to 264426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,332 DEBUG Processing 53/825 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,468 DEBUG Processing 881/1109 atomic regions from SNP 264126 to 264726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,471 DEBUG Processing 952/993 atomic regions from SNP 285334 to 285934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,593 DEBUG Processing 54/825 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:18,752 DEBUG Processing 953/993 atomic regions from SNP 285634 to 286234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,755 DEBUG Processing 882/1109 atomic regions from SNP 264426 to 265026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,841 DEBUG Processing 55/825 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,029 DEBUG Processing 954/993 atomic regions from SNP 285934 to 286534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,041 DEBUG Processing 883/1109 atomic regions from SNP 264726 to 265326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,085 DEBUG Processing 56/825 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,305 DEBUG Processing 955/993 atomic regions from SNP 286234 to 286834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,321 DEBUG Processing 57/825 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,328 DEBUG Processing 884/1109 atomic regions from SNP 265026 to 265626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,569 DEBUG Processing 58/825 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,579 DEBUG Processing 956/993 atomic regions from SNP 286534 to 287134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,613 DEBUG Processing 885/1109 atomic regions from SNP 265326 to 265926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,820 DEBUG Processing 59/825 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:19,846 DEBUG Processing 957/993 atomic regions from SNP 286834 to 287434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,898 DEBUG Processing 886/1109 atomic regions from SNP 265626 to 266226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,066 DEBUG Processing 60/825 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,115 DEBUG Processing 958/993 atomic regions from SNP 287134 to 287734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,181 DEBUG Processing 887/1109 atomic regions from SNP 265926 to 266526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,316 DEBUG Processing 61/825 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,392 DEBUG Processing 959/993 atomic regions from SNP 287434 to 288034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,466 DEBUG Processing 888/1109 atomic regions from SNP 266226 to 266826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,561 DEBUG Processing 62/825 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,666 DEBUG Processing 960/993 atomic regions from SNP 287734 to 288334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,750 DEBUG Processing 889/1109 atomic regions from SNP 266526 to 267126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,810 DEBUG Processing 63/825 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:20,943 DEBUG Processing 961/993 atomic regions from SNP 288034 to 288634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,036 DEBUG Processing 890/1109 atomic regions from SNP 266826 to 267426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,059 DEBUG Processing 64/825 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,220 DEBUG Processing 962/993 atomic regions from SNP 288334 to 288934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,304 DEBUG Processing 65/825 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,322 DEBUG Processing 891/1109 atomic regions from SNP 267126 to 267726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,500 DEBUG Processing 963/993 atomic regions from SNP 288634 to 289234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,549 DEBUG Processing 66/825 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,611 DEBUG Processing 892/1109 atomic regions from SNP 267426 to 268026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,787 DEBUG Processing 67/825 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:21,793 DEBUG Processing 964/993 atomic regions from SNP 288934 to 289534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,899 DEBUG Processing 893/1109 atomic regions from SNP 267726 to 268326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,044 DEBUG Processing 68/825 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,105 DEBUG Processing 965/993 atomic regions from SNP 289234 to 289834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,191 DEBUG Processing 894/1109 atomic regions from SNP 268026 to 268626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,295 DEBUG Processing 69/825 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,387 DEBUG Processing 966/993 atomic regions from SNP 289534 to 290134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,490 DEBUG Processing 895/1109 atomic regions from SNP 268326 to 268926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,551 DEBUG Processing 70/825 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,669 DEBUG Processing 967/993 atomic regions from SNP 289834 to 290434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,787 DEBUG Processing 896/1109 atomic regions from SNP 268626 to 269226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,809 DEBUG Processing 71/825 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:22,949 DEBUG Processing 968/993 atomic regions from SNP 290134 to 290734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,063 DEBUG Processing 72/825 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,094 DEBUG Processing 897/1109 atomic regions from SNP 268926 to 269526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,223 DEBUG Processing 969/993 atomic regions from SNP 290434 to 291034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,318 DEBUG Processing 73/825 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,393 DEBUG Processing 898/1109 atomic regions from SNP 269226 to 269826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,511 DEBUG Processing 970/993 atomic regions from SNP 290734 to 291334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,571 DEBUG Processing 74/825 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,690 DEBUG Processing 899/1109 atomic regions from SNP 269526 to 270126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,784 DEBUG Processing 971/993 atomic regions from SNP 291034 to 291634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,828 DEBUG Processing 75/825 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:23,986 DEBUG Processing 900/1109 atomic regions from SNP 269826 to 270426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,059 DEBUG Processing 972/993 atomic regions from SNP 291334 to 291934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,087 DEBUG Processing 76/825 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,286 DEBUG Processing 901/1109 atomic regions from SNP 270126 to 270726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,340 DEBUG Processing 973/993 atomic regions from SNP 291634 to 292234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,351 DEBUG Processing 77/825 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,603 DEBUG Processing 902/1109 atomic regions from SNP 270426 to 271026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,612 DEBUG Processing 78/825 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,615 DEBUG Processing 974/993 atomic regions from SNP 291934 to 292534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,870 DEBUG Processing 79/825 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:24,885 DEBUG Processing 975/993 atomic regions from SNP 292234 to 292834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,929 DEBUG Processing 903/1109 atomic regions from SNP 270726 to 271326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,137 DEBUG Processing 80/825 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,160 DEBUG Processing 976/993 atomic regions from SNP 292534 to 293134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,262 DEBUG Processing 904/1109 atomic regions from SNP 271026 to 271626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,404 DEBUG Processing 81/825 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,436 DEBUG Processing 977/993 atomic regions from SNP 292834 to 293434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,585 DEBUG Processing 905/1109 atomic regions from SNP 271326 to 271926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,660 DEBUG Processing 82/825 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:25,748 DEBUG Processing 978/993 atomic regions from SNP 293134 to 293734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,883 DEBUG Processing 906/1109 atomic regions from SNP 271626 to 272226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,916 DEBUG Processing 83/825 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,041 DEBUG Processing 979/993 atomic regions from SNP 293434 to 294034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,172 DEBUG Processing 84/825 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,179 DEBUG Processing 907/1109 atomic regions from SNP 271926 to 272526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,316 DEBUG Processing 980/993 atomic regions from SNP 293734 to 294334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,433 DEBUG Processing 85/825 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,495 DEBUG Processing 908/1109 atomic regions from SNP 272226 to 272826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,588 DEBUG Processing 981/993 atomic regions from SNP 294034 to 294634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,686 DEBUG Processing 86/825 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:26,812 DEBUG Processing 909/1109 atomic regions from SNP 272526 to 273126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,881 DEBUG Processing 982/993 atomic regions from SNP 294334 to 294934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,934 DEBUG Processing 87/825 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,102 DEBUG Processing 910/1109 atomic regions from SNP 272826 to 273426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,167 DEBUG Processing 983/993 atomic regions from SNP 294634 to 295234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,182 DEBUG Processing 88/825 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,393 DEBUG Processing 911/1109 atomic regions from SNP 273126 to 273726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,433 DEBUG Processing 89/825 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,439 DEBUG Processing 984/993 atomic regions from SNP 294934 to 295534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,677 DEBUG Processing 90/825 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,696 DEBUG Processing 912/1109 atomic regions from SNP 273426 to 274026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,709 DEBUG Processing 985/993 atomic regions from SNP 295234 to 295834 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,932 DEBUG Processing 91/825 atomic regions from SNP 27090 to 27690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:27,941 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:46:27,982 DEBUG Processing 986/993 atomic regions from SNP 295534 to 296134 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,001 DEBUG Processing 913/1109 atomic regions from SNP 273726 to 274326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,189 DEBUG Processing 92/825 atomic regions from SNP 27390 to 27990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,258 DEBUG Processing 987/993 atomic regions from SNP 295834 to 296434 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,296 DEBUG Processing 914/1109 atomic regions from SNP 274026 to 274626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,372 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:46:28,454 DEBUG Processing 93/825 atomic regions from SNP 27690 to 28290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,528 DEBUG Processing 988/993 atomic regions from SNP 296134 to 296734 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,585 DEBUG Processing 915/1109 atomic regions from SNP 274326 to 274926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,703 DEBUG Processing 94/825 atomic regions from SNP 27990 to 28590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:28,801 DEBUG Processing 989/993 atomic regions from SNP 296434 to 297034 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,878 DEBUG Processing 916/1109 atomic regions from SNP 274626 to 275226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,957 DEBUG Processing 95/825 atomic regions from SNP 28290 to 28890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,076 DEBUG Processing 990/993 atomic regions from SNP 296734 to 297334 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,173 DEBUG Processing 917/1109 atomic regions from SNP 274926 to 275526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,219 DEBUG Processing 96/825 atomic regions from SNP 28590 to 29190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,367 DEBUG Processing 991/993 atomic regions from SNP 297034 to 297634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,478 DEBUG Processing 918/1109 atomic regions from SNP 275226 to 275826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,483 DEBUG Processing 97/825 atomic regions from SNP 28890 to 29490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,639 DEBUG Processing 992/993 atomic regions from SNP 297334 to 297934 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,738 DEBUG Processing 98/825 atomic regions from SNP 29190 to 29790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:29,774 DEBUG Processing 919/1109 atomic regions from SNP 275526 to 276126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,909 DEBUG Processing 993/993 atomic regions from SNP 297634 to 298234 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,986 DEBUG Processing 99/825 atomic regions from SNP 29490 to 30090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,043 DEBUG Unique SNPs positions in subchromosome 1: 298235 2025-01-31 09:46:30,071 DEBUG Processing 920/1109 atomic regions from SNP 275826 to 276426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,223 DEBUG Processing 100/825 atomic regions from SNP 29790 to 30390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,361 DEBUG Processing 921/1109 atomic regions from SNP 276126 to 276726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,458 DEBUG Processing 101/825 atomic regions from SNP 30090 to 30690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,654 DEBUG Processing 922/1109 atomic regions from SNP 276426 to 277026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,704 DEBUG Processing 102/825 atomic regions from SNP 30390 to 30990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,953 DEBUG Processing 103/825 atomic regions from SNP 30690 to 31290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:30,965 DEBUG Processing 923/1109 atomic regions from SNP 276726 to 277326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,207 DEBUG Processing 104/825 atomic regions from SNP 30990 to 31590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,258 DEBUG Processing 924/1109 atomic regions from SNP 277026 to 277626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,456 DEBUG Processing 105/825 atomic regions from SNP 31290 to 31890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,545 DEBUG Processing 925/1109 atomic regions from SNP 277326 to 277926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,704 DEBUG Processing 106/825 atomic regions from SNP 31590 to 32190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:31,822 DEBUG Processing 926/1109 atomic regions from SNP 277626 to 278226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,958 DEBUG Processing 107/825 atomic regions from SNP 31890 to 32490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,104 DEBUG Processing 927/1109 atomic regions from SNP 277926 to 278526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,211 DEBUG Processing 108/825 atomic regions from SNP 32190 to 32790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,408 DEBUG Processing 928/1109 atomic regions from SNP 278226 to 278826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,457 DEBUG Processing 109/825 atomic regions from SNP 32490 to 33090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,706 DEBUG Processing 110/825 atomic regions from SNP 32790 to 33390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:32,717 DEBUG Processing 929/1109 atomic regions from SNP 278526 to 279126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,959 DEBUG Processing 111/825 atomic regions from SNP 33090 to 33690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,038 DEBUG Processing 930/1109 atomic regions from SNP 278826 to 279426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,211 DEBUG Processing 112/825 atomic regions from SNP 33390 to 33990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,360 DEBUG Processing 931/1109 atomic regions from SNP 279126 to 279726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,458 DEBUG Processing 113/825 atomic regions from SNP 33690 to 34290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,677 DEBUG Processing 932/1109 atomic regions from SNP 279426 to 280026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,704 DEBUG Processing 114/825 atomic regions from SNP 33990 to 34590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,944 DEBUG Processing 115/825 atomic regions from SNP 34290 to 34890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:33,988 DEBUG Processing 933/1109 atomic regions from SNP 279726 to 280326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,173 DEBUG Processing 116/825 atomic regions from SNP 34590 to 35190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,287 DEBUG Processing 934/1109 atomic regions from SNP 280026 to 280626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,424 DEBUG Processing 117/825 atomic regions from SNP 34890 to 35490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,579 DEBUG Processing 935/1109 atomic regions from SNP 280326 to 280926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,677 DEBUG Processing 118/825 atomic regions from SNP 35190 to 35790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:34,877 DEBUG Processing 936/1109 atomic regions from SNP 280626 to 281226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,938 DEBUG Processing 119/825 atomic regions from SNP 35490 to 36090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,170 DEBUG Processing 937/1109 atomic regions from SNP 280926 to 281526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,196 DEBUG Processing 120/825 atomic regions from SNP 35790 to 36390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,451 DEBUG Processing 121/825 atomic regions from SNP 36090 to 36690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,461 DEBUG Processing 938/1109 atomic regions from SNP 281226 to 281826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,697 DEBUG Processing 122/825 atomic regions from SNP 36390 to 36990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:35,744 DEBUG Processing 939/1109 atomic regions from SNP 281526 to 282126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,936 DEBUG Processing 123/825 atomic regions from SNP 36690 to 37290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,040 DEBUG Processing 940/1109 atomic regions from SNP 281826 to 282426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,174 DEBUG Processing 124/825 atomic regions from SNP 36990 to 37590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,356 DEBUG Processing 941/1109 atomic regions from SNP 282126 to 282726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,417 DEBUG Processing 125/825 atomic regions from SNP 37290 to 37890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,652 DEBUG Processing 942/1109 atomic regions from SNP 282426 to 283026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,663 DEBUG Processing 126/825 atomic regions from SNP 37590 to 38190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,907 DEBUG Processing 127/825 atomic regions from SNP 37890 to 38490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:36,940 DEBUG Processing 943/1109 atomic regions from SNP 282726 to 283326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,150 DEBUG Processing 128/825 atomic regions from SNP 38190 to 38790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,230 DEBUG Processing 944/1109 atomic regions from SNP 283026 to 283626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,384 DEBUG Processing 129/825 atomic regions from SNP 38490 to 39090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,453 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:46:37,515 DEBUG Processing 945/1109 atomic regions from SNP 283326 to 283926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,622 DEBUG Processing 130/825 atomic regions from SNP 38790 to 39390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:37,809 DEBUG Processing 946/1109 atomic regions from SNP 283626 to 284226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,867 DEBUG Processing 131/825 atomic regions from SNP 39090 to 39690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,101 DEBUG Processing 947/1109 atomic regions from SNP 283926 to 284526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,117 DEBUG Processing 132/825 atomic regions from SNP 39390 to 39990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,366 DEBUG Processing 133/825 atomic regions from SNP 39690 to 40290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,393 DEBUG Processing 948/1109 atomic regions from SNP 284226 to 284826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,611 DEBUG Processing 134/825 atomic regions from SNP 39990 to 40590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,684 DEBUG Processing 949/1109 atomic regions from SNP 284526 to 285126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,854 DEBUG Processing 135/825 atomic regions from SNP 40290 to 40890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:38,971 DEBUG Processing 950/1109 atomic regions from SNP 284826 to 285426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,094 DEBUG Processing 136/825 atomic regions from SNP 40590 to 41190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,256 DEBUG Processing 951/1109 atomic regions from SNP 285126 to 285726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,331 DEBUG Processing 137/825 atomic regions from SNP 40890 to 41490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,543 DEBUG Processing 952/1109 atomic regions from SNP 285426 to 286026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,609 DEBUG Processing 138/825 atomic regions from SNP 41190 to 41790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:39,829 DEBUG Processing 953/1109 atomic regions from SNP 285726 to 286326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,854 DEBUG Processing 139/825 atomic regions from SNP 41490 to 42090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,096 DEBUG Processing 140/825 atomic regions from SNP 41790 to 42390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,115 DEBUG Processing 954/1109 atomic regions from SNP 286026 to 286626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,340 DEBUG Processing 141/825 atomic regions from SNP 42090 to 42690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,405 DEBUG Processing 955/1109 atomic regions from SNP 286326 to 286926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,594 DEBUG Processing 142/825 atomic regions from SNP 42390 to 42990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,702 DEBUG Processing 956/1109 atomic regions from SNP 286626 to 287226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,854 DEBUG Processing 143/825 atomic regions from SNP 42690 to 43290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:40,996 DEBUG Processing 957/1109 atomic regions from SNP 286926 to 287526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,116 DEBUG Processing 144/825 atomic regions from SNP 42990 to 43590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,293 DEBUG Processing 958/1109 atomic regions from SNP 287226 to 287826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,371 DEBUG Processing 145/825 atomic regions from SNP 43290 to 43890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,592 DEBUG Processing 959/1109 atomic regions from SNP 287526 to 288126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,638 DEBUG Processing 146/825 atomic regions from SNP 43590 to 44190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:41,886 DEBUG Processing 960/1109 atomic regions from SNP 287826 to 288426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,887 DEBUG Processing 147/825 atomic regions from SNP 43890 to 44490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,154 DEBUG Processing 148/825 atomic regions from SNP 44190 to 44790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,189 DEBUG Processing 961/1109 atomic regions from SNP 288126 to 288726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,442 DEBUG Processing 149/825 atomic regions from SNP 44490 to 45090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,514 DEBUG Processing 962/1109 atomic regions from SNP 288426 to 289026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,714 DEBUG Processing 150/825 atomic regions from SNP 44790 to 45390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:42,829 DEBUG Processing 963/1109 atomic regions from SNP 288726 to 289326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,964 DEBUG Processing 151/825 atomic regions from SNP 45090 to 45690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,149 DEBUG Processing 964/1109 atomic regions from SNP 289026 to 289626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,209 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:46:43,212 DEBUG chr10: Signal quantile: 0.991. signal threshold: 12. Best RMSEA: 0.017 2025-01-31 09:46:43,212 DEBUG Processing 152/825 atomic regions from SNP 45390 to 45990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,466 DEBUG Processing 153/825 atomic regions from SNP 45690 to 46290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,471 DEBUG Processing 965/1109 atomic regions from SNP 289326 to 289926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,744 DEBUG Processing 154/825 atomic regions from SNP 45990 to 46590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:43,799 DEBUG Processing 966/1109 atomic regions from SNP 289626 to 290226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,022 DEBUG Processing 155/825 atomic regions from SNP 46290 to 46890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,113 DEBUG Processing 967/1109 atomic regions from SNP 289926 to 290526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,276 DEBUG Processing 156/825 atomic regions from SNP 46590 to 47190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,403 DEBUG Processing 968/1109 atomic regions from SNP 290226 to 290826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,535 DEBUG Processing 157/825 atomic regions from SNP 46890 to 47490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,686 DEBUG Processing 969/1109 atomic regions from SNP 290526 to 291126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,787 DEBUG Processing 158/825 atomic regions from SNP 47190 to 47790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:44,987 DEBUG Processing 970/1109 atomic regions from SNP 290826 to 291426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,024 DEBUG Processing 159/825 atomic regions from SNP 47490 to 48090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,263 DEBUG Processing 160/825 atomic regions from SNP 47790 to 48390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,301 DEBUG Processing 971/1109 atomic regions from SNP 291126 to 291726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,507 DEBUG Processing 161/825 atomic regions from SNP 48090 to 48690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,605 DEBUG Processing 972/1109 atomic regions from SNP 291426 to 292026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,616 DEBUG chr10 total SNP count: 217650 2025-01-31 09:46:45,616 DEBUG chr10 length: 130694993 2025-01-31 09:46:45,617 DEBUG ----------------------------------------- 2025-01-31 09:46:45,617 INFO Processing SNPs in chr10 2025-01-31 09:46:45,764 DEBUG Processing 162/825 atomic regions from SNP 48390 to 48990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:45,844 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217650)] 2025-01-31 09:46:45,878 DEBUG Processing 973/1109 atomic regions from SNP 291726 to 292326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,998 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:46,014 DEBUG Processing 163/825 atomic regions from SNP 48690 to 49290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,149 DEBUG Processing 974/1109 atomic regions from SNP 292026 to 292626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,269 DEBUG Processing 164/825 atomic regions from SNP 48990 to 49590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,428 DEBUG Processing 975/1109 atomic regions from SNP 292326 to 292926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,513 DEBUG Processing 165/825 atomic regions from SNP 49290 to 49890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,709 DEBUG Processing 976/1109 atomic regions from SNP 292626 to 293226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,756 DEBUG Processing 166/825 atomic regions from SNP 49590 to 50190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:46,994 DEBUG Processing 977/1109 atomic regions from SNP 292926 to 293526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,004 DEBUG Processing 167/825 atomic regions from SNP 49890 to 50490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,255 DEBUG Processing 168/825 atomic regions from SNP 50190 to 50790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,287 DEBUG Processing 978/1109 atomic regions from SNP 293226 to 293826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,503 DEBUG Processing 169/825 atomic regions from SNP 50490 to 51090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,562 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:46:47,564 DEBUG chr7: Signal quantile: 0.988. signal threshold: 12. Best RMSEA: 0.014 2025-01-31 09:46:47,588 DEBUG Processing 979/1109 atomic regions from SNP 293526 to 294126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,743 DEBUG Processing 170/825 atomic regions from SNP 50790 to 51390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:47,879 DEBUG Processing 980/1109 atomic regions from SNP 293826 to 294426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,990 DEBUG Processing 171/825 atomic regions from SNP 51090 to 51690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,172 DEBUG Processing 981/1109 atomic regions from SNP 294126 to 294726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,239 DEBUG Processing 172/825 atomic regions from SNP 51390 to 51990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,460 DEBUG Processing 982/1109 atomic regions from SNP 294426 to 295026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,493 DEBUG Processing 173/825 atomic regions from SNP 51690 to 52290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,734 DEBUG Processing 174/825 atomic regions from SNP 51990 to 52590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:48,746 DEBUG Processing 983/1109 atomic regions from SNP 294726 to 295326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,988 DEBUG Processing 175/825 atomic regions from SNP 52290 to 52890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,040 DEBUG Processing 984/1109 atomic regions from SNP 295026 to 295626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,225 DEBUG Processing 176/825 atomic regions from SNP 52590 to 53190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,331 DEBUG Processing 985/1109 atomic regions from SNP 295326 to 295926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,487 DEBUG Processing 177/825 atomic regions from SNP 52890 to 53490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,631 DEBUG Processing 986/1109 atomic regions from SNP 295626 to 296226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,754 DEBUG Processing 178/825 atomic regions from SNP 53190 to 53790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:49,926 DEBUG Processing 987/1109 atomic regions from SNP 295926 to 296526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,013 DEBUG Processing 179/825 atomic regions from SNP 53490 to 54090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,228 DEBUG Processing 988/1109 atomic regions from SNP 296226 to 296826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,254 DEBUG chr7 total SNP count: 226312 2025-01-31 09:46:50,254 DEBUG chr7 length: 145441459 2025-01-31 09:46:50,254 DEBUG ----------------------------------------- 2025-01-31 09:46:50,254 INFO Processing SNPs in chr7 2025-01-31 09:46:50,296 DEBUG Processing 180/825 atomic regions from SNP 53790 to 54390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,521 DEBUG Processing 989/1109 atomic regions from SNP 296526 to 297126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,541 DEBUG Processing 181/825 atomic regions from SNP 54090 to 54690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,625 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20126), (20126, 20138), (20138, 226312)] 2025-01-31 09:46:50,733 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:50,778 DEBUG Processing 182/825 atomic regions from SNP 54390 to 54990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:50,823 DEBUG Processing 990/1109 atomic regions from SNP 296826 to 297426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,024 DEBUG Processing 183/825 atomic regions from SNP 54690 to 55290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,115 DEBUG Processing 991/1109 atomic regions from SNP 297126 to 297726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,277 DEBUG Processing 184/825 atomic regions from SNP 54990 to 55590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,397 DEBUG Processing 992/1109 atomic regions from SNP 297426 to 298026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,521 DEBUG Processing 185/825 atomic regions from SNP 55290 to 55890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,682 DEBUG Processing 993/1109 atomic regions from SNP 297726 to 298326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,770 DEBUG Processing 186/825 atomic regions from SNP 55590 to 56190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:51,973 DEBUG Processing 994/1109 atomic regions from SNP 298026 to 298626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,019 DEBUG Processing 187/825 atomic regions from SNP 55890 to 56490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,262 DEBUG Processing 995/1109 atomic regions from SNP 298326 to 298926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,271 DEBUG Processing 188/825 atomic regions from SNP 56190 to 56790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,515 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:46:52,517 DEBUG chr8: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.017 2025-01-31 09:46:52,517 DEBUG Processing 189/825 atomic regions from SNP 56490 to 57090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,549 DEBUG Processing 996/1109 atomic regions from SNP 298626 to 299226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,762 DEBUG Processing 190/825 atomic regions from SNP 56790 to 57390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:52,840 DEBUG Processing 997/1109 atomic regions from SNP 298926 to 299526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,009 DEBUG Processing 191/825 atomic regions from SNP 57090 to 57690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,138 DEBUG Processing 998/1109 atomic regions from SNP 299226 to 299826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,198 DEBUG Segmenting atomic regions: 2025-01-31 09:46:53,259 DEBUG Processing 192/825 atomic regions from SNP 57390 to 57990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,301 DEBUG Processing 1/66 atomic regions from SNP 0 to 601 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:53,424 DEBUG Processing 999/1109 atomic regions from SNP 299526 to 300126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,506 DEBUG Processing 193/825 atomic regions from SNP 57690 to 58290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,509 DEBUG Processing 2/66 atomic regions from SNP 301 to 902 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:53,710 DEBUG Processing 1000/1109 atomic regions from SNP 299826 to 300426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,735 DEBUG Processing 3/66 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:53,756 DEBUG Processing 194/825 atomic regions from SNP 57990 to 58590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:53,991 DEBUG Processing 4/66 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:54,012 DEBUG Processing 1001/1109 atomic regions from SNP 300126 to 300726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,024 DEBUG Processing 195/825 atomic regions from SNP 58290 to 58890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,213 DEBUG Processing 5/66 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:54,284 DEBUG Processing 196/825 atomic regions from SNP 58590 to 59190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,322 DEBUG Processing 1002/1109 atomic regions from SNP 300426 to 301026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,419 DEBUG Processing 6/66 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:54,547 DEBUG Processing 197/825 atomic regions from SNP 58890 to 59490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,621 DEBUG Processing 1003/1109 atomic regions from SNP 300726 to 301326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,654 DEBUG Processing 7/66 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:54,826 DEBUG Processing 198/825 atomic regions from SNP 59190 to 59790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:54,905 DEBUG Processing 8/66 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:54,921 DEBUG Processing 1004/1109 atomic regions from SNP 301026 to 301626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,968 DEBUG chr8 total SNP count: 212986 2025-01-31 09:46:54,969 DEBUG chr8 length: 129401213 2025-01-31 09:46:54,969 DEBUG ----------------------------------------- 2025-01-31 09:46:54,969 INFO Processing SNPs in chr8 2025-01-31 09:46:55,095 DEBUG Processing 199/825 atomic regions from SNP 59490 to 60090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,158 DEBUG Processing 9/66 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:55,185 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 212986)] 2025-01-31 09:46:55,220 DEBUG Processing 1005/1109 atomic regions from SNP 301326 to 301926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,334 DEBUG Processing 200/825 atomic regions from SNP 59790 to 60390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,335 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:55,417 DEBUG Processing 10/66 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:55,542 DEBUG Processing 1006/1109 atomic regions from SNP 301626 to 302226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,601 DEBUG Processing 201/825 atomic regions from SNP 60090 to 60690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,672 DEBUG Processing 11/66 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:55,856 DEBUG Processing 1007/1109 atomic regions from SNP 301926 to 302526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,863 DEBUG Processing 202/825 atomic regions from SNP 60390 to 60990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:55,889 DEBUG Processing 12/66 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:56,104 DEBUG Processing 13/66 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:56,112 DEBUG Processing 203/825 atomic regions from SNP 60690 to 61290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,141 DEBUG Processing 1008/1109 atomic regions from SNP 302226 to 302826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,324 DEBUG Processing 14/66 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:56,375 DEBUG Processing 204/825 atomic regions from SNP 60990 to 61590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,425 DEBUG Processing 1009/1109 atomic regions from SNP 302526 to 303126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,545 DEBUG Processing 15/66 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:56,643 DEBUG Processing 205/825 atomic regions from SNP 61290 to 61890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,710 DEBUG Processing 1010/1109 atomic regions from SNP 302826 to 303426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,791 DEBUG Processing 16/66 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:56,893 DEBUG Processing 206/825 atomic regions from SNP 61590 to 62190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:56,992 DEBUG Processing 1011/1109 atomic regions from SNP 303126 to 303726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,032 DEBUG Processing 17/66 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:57,153 DEBUG Processing 207/825 atomic regions from SNP 61890 to 62490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,271 DEBUG Processing 18/66 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:57,275 DEBUG Processing 1012/1109 atomic regions from SNP 303426 to 304026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,488 DEBUG Processing 208/825 atomic regions from SNP 62190 to 62790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,557 DEBUG Processing 19/66 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:57,594 DEBUG Processing 1013/1109 atomic regions from SNP 303726 to 304326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,732 DEBUG Processing 209/825 atomic regions from SNP 62490 to 63090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:57,818 DEBUG Processing 20/66 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:57,911 DEBUG Processing 1014/1109 atomic regions from SNP 304026 to 304626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,962 DEBUG Processing 210/825 atomic regions from SNP 62790 to 63390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,033 DEBUG Processing 21/66 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:58,211 DEBUG Processing 211/825 atomic regions from SNP 63090 to 63690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,223 DEBUG Processing 1015/1109 atomic regions from SNP 304326 to 304926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,245 DEBUG Processing 22/66 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:58,456 DEBUG Processing 212/825 atomic regions from SNP 63390 to 63990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,464 DEBUG Processing 23/66 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:58,528 DEBUG Processing 1016/1109 atomic regions from SNP 304626 to 305226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,688 DEBUG Processing 24/66 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:58,698 DEBUG Processing 213/825 atomic regions from SNP 63690 to 64290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:58,818 DEBUG Processing 1017/1109 atomic regions from SNP 304926 to 305526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,906 DEBUG Processing 25/66 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:58,926 DEBUG Processing 214/825 atomic regions from SNP 63990 to 64590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,056 DEBUG Subchromosome time: 361.6953004151583, subchromosome SNPs: 298235 2025-01-31 09:46:59,059 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:59,136 DEBUG Processing 26/66 atomic regions from SNP 7525 to 8125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:59,139 DEBUG Processing 1018/1109 atomic regions from SNP 305226 to 305826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,178 DEBUG Processing 215/825 atomic regions from SNP 64290 to 64890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,347 DEBUG Processing 27/66 atomic regions from SNP 7825 to 8425 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:59,413 DEBUG Processing 216/825 atomic regions from SNP 64590 to 65190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,448 DEBUG Processing 1019/1109 atomic regions from SNP 305526 to 306126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,568 DEBUG Processing 28/66 atomic regions from SNP 8125 to 8725 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:59,656 DEBUG Processing 217/825 atomic regions from SNP 64890 to 65490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:46:59,754 DEBUG Processing 1020/1109 atomic regions from SNP 305826 to 306426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,785 DEBUG Processing 29/66 atomic regions from SNP 8425 to 9025 for chr7 (subchromosome 1 of 3). 2025-01-31 09:46:59,898 DEBUG Processing 218/825 atomic regions from SNP 65190 to 65790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,000 DEBUG Processing 30/66 atomic regions from SNP 8725 to 9325 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:00,020 DEBUG Segmenting atomic regions: 2025-01-31 09:47:00,069 DEBUG Processing 1021/1109 atomic regions from SNP 306126 to 306726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,145 DEBUG Processing 219/825 atomic regions from SNP 65490 to 66090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,161 DEBUG Processing 1/25 atomic regions from SNP 0 to 602 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:00,215 DEBUG Processing 31/66 atomic regions from SNP 9025 to 9625 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:00,384 DEBUG Processing 1022/1109 atomic regions from SNP 306426 to 307026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,391 DEBUG Processing 220/825 atomic regions from SNP 65790 to 66390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,431 DEBUG Processing 2/25 atomic regions from SNP 302 to 904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:00,445 DEBUG Processing 32/66 atomic regions from SNP 9325 to 9925 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:00,652 DEBUG Processing 221/825 atomic regions from SNP 66090 to 66690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,671 DEBUG Processing 33/66 atomic regions from SNP 9625 to 10225 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:00,693 DEBUG Processing 3/25 atomic regions from SNP 604 to 1205 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:00,717 DEBUG Processing 1023/1109 atomic regions from SNP 306726 to 307326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,889 DEBUG Processing 34/66 atomic regions from SNP 9925 to 10525 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:00,898 DEBUG Processing 222/825 atomic regions from SNP 66390 to 66990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:00,940 DEBUG Processing 4/25 atomic regions from SNP 905 to 1506 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:01,039 DEBUG Processing 1024/1109 atomic regions from SNP 307026 to 307626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,135 DEBUG Processing 35/66 atomic regions from SNP 10225 to 10825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:01,136 DEBUG Processing 223/825 atomic regions from SNP 66690 to 67290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,190 DEBUG Processing 5/25 atomic regions from SNP 1206 to 1807 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:01,353 DEBUG Processing 1025/1109 atomic regions from SNP 307326 to 307926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,366 DEBUG Processing 36/66 atomic regions from SNP 10525 to 11125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:01,383 DEBUG Processing 224/825 atomic regions from SNP 66990 to 67590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,440 DEBUG Processing 6/25 atomic regions from SNP 1507 to 2108 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:01,580 DEBUG Processing 37/66 atomic regions from SNP 10825 to 11425 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:01,637 DEBUG Processing 225/825 atomic regions from SNP 67290 to 67890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,646 DEBUG Processing 1026/1109 atomic regions from SNP 307626 to 308226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,692 DEBUG Processing 7/25 atomic regions from SNP 1808 to 2409 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:01,791 DEBUG Processing 38/66 atomic regions from SNP 11125 to 11725 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:01,885 DEBUG Processing 226/825 atomic regions from SNP 67590 to 68190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:01,938 DEBUG Processing 1027/1109 atomic regions from SNP 307926 to 308526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,947 DEBUG Processing 8/25 atomic regions from SNP 2109 to 2710 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:01,998 DEBUG Processing 39/66 atomic regions from SNP 11425 to 12025 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:02,130 DEBUG Processing 227/825 atomic regions from SNP 67890 to 68490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,203 DEBUG Processing 9/25 atomic regions from SNP 2410 to 3011 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:02,210 DEBUG Processing 40/66 atomic regions from SNP 11725 to 12325 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:02,243 DEBUG Processing 1028/1109 atomic regions from SNP 308226 to 308826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,379 DEBUG Processing 228/825 atomic regions from SNP 68190 to 68790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,429 DEBUG Processing 41/66 atomic regions from SNP 12025 to 12625 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:02,465 DEBUG Processing 10/25 atomic regions from SNP 2711 to 3312 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:02,524 DEBUG Processing 1029/1109 atomic regions from SNP 308526 to 309126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,628 DEBUG Processing 229/825 atomic regions from SNP 68490 to 69090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,648 DEBUG Processing 42/66 atomic regions from SNP 12325 to 12925 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:02,724 DEBUG Processing 11/25 atomic regions from SNP 3012 to 3613 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:02,815 DEBUG Processing 1030/1109 atomic regions from SNP 308826 to 309426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,872 DEBUG Processing 43/66 atomic regions from SNP 12625 to 13225 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:02,876 DEBUG Processing 230/825 atomic regions from SNP 68790 to 69390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:02,991 DEBUG Processing 12/25 atomic regions from SNP 3313 to 3914 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:03,085 DEBUG Processing 44/66 atomic regions from SNP 12925 to 13525 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:03,106 DEBUG Processing 1031/1109 atomic regions from SNP 309126 to 309726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,117 DEBUG Processing 231/825 atomic regions from SNP 69090 to 69690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,264 DEBUG Processing 13/25 atomic regions from SNP 3614 to 4215 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:03,303 DEBUG Processing 45/66 atomic regions from SNP 13225 to 13825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:03,356 DEBUG Processing 232/825 atomic regions from SNP 69390 to 69990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,392 DEBUG Processing 1032/1109 atomic regions from SNP 309426 to 310026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,551 DEBUG Processing 46/66 atomic regions from SNP 13525 to 14125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:03,557 DEBUG Processing 14/25 atomic regions from SNP 3915 to 4516 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:03,597 DEBUG Processing 233/825 atomic regions from SNP 69690 to 70290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,673 DEBUG Processing 1033/1109 atomic regions from SNP 309726 to 310326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,801 DEBUG Processing 47/66 atomic regions from SNP 13825 to 14425 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:03,841 DEBUG Processing 234/825 atomic regions from SNP 69990 to 70590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:03,860 DEBUG Processing 15/25 atomic regions from SNP 4216 to 4817 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:03,964 DEBUG Processing 1034/1109 atomic regions from SNP 310026 to 310626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,052 DEBUG Processing 48/66 atomic regions from SNP 14125 to 14725 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:04,092 DEBUG Processing 235/825 atomic regions from SNP 70290 to 70890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,158 DEBUG Processing 16/25 atomic regions from SNP 4517 to 5118 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:04,255 DEBUG Processing 1035/1109 atomic regions from SNP 310326 to 310926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,301 DEBUG Processing 49/66 atomic regions from SNP 14425 to 15025 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:04,335 DEBUG Processing 236/825 atomic regions from SNP 70590 to 71190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,432 DEBUG Processing 17/25 atomic regions from SNP 4818 to 5419 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:04,524 DEBUG Processing 50/66 atomic regions from SNP 14725 to 15325 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:04,550 DEBUG Processing 1036/1109 atomic regions from SNP 310626 to 311226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,577 DEBUG Processing 237/825 atomic regions from SNP 70890 to 71490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,714 DEBUG Processing 18/25 atomic regions from SNP 5119 to 5720 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:04,746 DEBUG Processing 51/66 atomic regions from SNP 15025 to 15625 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:04,829 DEBUG Processing 238/825 atomic regions from SNP 71190 to 71790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,878 DEBUG Processing 1037/1109 atomic regions from SNP 310926 to 311526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,990 DEBUG Processing 52/66 atomic regions from SNP 15325 to 15925 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:04,999 DEBUG Processing 19/25 atomic regions from SNP 5420 to 6021 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:05,086 DEBUG Processing 239/825 atomic regions from SNP 71490 to 72090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,184 DEBUG Processing 1038/1109 atomic regions from SNP 311226 to 311826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,220 DEBUG Processing 53/66 atomic regions from SNP 15625 to 16225 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:05,273 DEBUG Processing 20/25 atomic regions from SNP 5721 to 6322 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:05,344 DEBUG Processing 240/825 atomic regions from SNP 71790 to 72390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,433 DEBUG Processing 54/66 atomic regions from SNP 15925 to 16525 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:05,467 DEBUG Processing 1039/1109 atomic regions from SNP 311526 to 312126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,557 DEBUG Processing 21/25 atomic regions from SNP 6022 to 6623 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:05,595 DEBUG Processing 241/825 atomic regions from SNP 72090 to 72690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,651 DEBUG Processing 55/66 atomic regions from SNP 16225 to 16825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:05,751 DEBUG Processing 1040/1109 atomic regions from SNP 311826 to 312426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,843 DEBUG Processing 242/825 atomic regions from SNP 72390 to 72990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,850 DEBUG Processing 22/25 atomic regions from SNP 6323 to 6924 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:05,878 DEBUG Processing 56/66 atomic regions from SNP 16525 to 17125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:06,041 DEBUG Processing 1041/1109 atomic regions from SNP 312126 to 312726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,089 DEBUG Processing 243/825 atomic regions from SNP 72690 to 73290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,098 DEBUG Processing 57/66 atomic regions from SNP 16825 to 17425 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:06,142 DEBUG Processing 23/25 atomic regions from SNP 6624 to 7225 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:06,321 DEBUG Processing 58/66 atomic regions from SNP 17125 to 17725 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:06,323 DEBUG Processing 1042/1109 atomic regions from SNP 312426 to 313026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,334 DEBUG Processing 244/825 atomic regions from SNP 72990 to 73590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,442 DEBUG Processing 24/25 atomic regions from SNP 6925 to 7526 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:06,542 DEBUG Processing 59/66 atomic regions from SNP 17425 to 18025 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:06,588 DEBUG Processing 245/825 atomic regions from SNP 73290 to 73890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,616 DEBUG Processing 1043/1109 atomic regions from SNP 312726 to 313326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,733 DEBUG Processing 25/25 atomic regions from SNP 7226 to 7827 for chr2 (subchromosome 2 of 2). 2025-01-31 09:47:06,756 DEBUG Processing 60/66 atomic regions from SNP 17725 to 18325 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:06,835 DEBUG Processing 246/825 atomic regions from SNP 73590 to 74190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,863 DEBUG Unique SNPs positions in subchromosome 2: 7828 2025-01-31 09:47:06,873 DEBUG Subchromosome time: 7.81456633284688, subchromosome SNPs: 7828 2025-01-31 09:47:06,874 DEBUG Estimated BADs: [1.79, 0.90, 1.79, 5.37, 0.36, 3.58, 0.36, 1.79, 0.22, 0.90, 0.26, 3.58, 0.90, 3.58, 1.79, 0.90, 8.95, 0.20, 1.79, 3.58, 0.18, 1.79, 0.60, 1.79, 0.90, 3.58, 0.26, 1.79, 3.58, 1.79, 0.30, 0.90, 5.37, 1.79, 5.37, 1.79, 3.58, 1.79, 8.95] SNP counts: [8200, 17501, 11527, 21428, 1138, 4318, 8030, 1788, 3892, 9559, 5260, 802, 20881, 6993, 13490, 5886, 1319, 5704, 2024, 7881, 7800, 12638, 6890, 4462, 6909, 7854, 1721, 5526, 7704, 11091, 2992, 20511, 13728, 8688, 9013, 7942, 5145, 3715, 4113] SNP IDs counts: [8200, 17501, 11527, 21428, 1138, 4318, 8030, 1788, 3892, 9559, 5260, 802, 20881, 6993, 13490, 5886, 1319, 5704, 2024, 7881, 7800, 12638, 6890, 4462, 6909, 7854, 1721, 5526, 7704, 11091, 2992, 20511, 13728, 8688, 9013, 7942, 5145, 3715, 4113] Critical gap: 736989bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.58Mbp, 18.03Mbp, 24.92Mbp, 36.24Mbp, 37.00Mbp, 39.39Mbp, 44.54Mbp, 45.50Mbp, 48.02Mbp, 53.39Mbp, 57.07Mbp, 57.52Mbp, 69.78Mbp, 73.49Mbp, 80.86Mbp, 84.65Mbp, 85.37Mbp, 89.37Mbp, 90.84Mbp, 95.06Mbp, 100.90Mbp, 107.87Mbp, 112.24Mbp, 114.78Mbp, 118.65Mbp, 122.87Mbp, 123.99Mbp, 127.05Mbp, 131.16Mbp, 137.33Mbp, 139.13Mbp, 150.90Mbp, 158.52Mbp, 163.26Mbp, 168.05Mbp, 172.29Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:47:06,874 DEBUG chr2 time: 7.8152283653616905 s 2025-01-31 09:47:06,909 DEBUG Processing 1044/1109 atomic regions from SNP 313026 to 313626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,987 DEBUG Processing 61/66 atomic regions from SNP 18025 to 18625 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:07,065 DEBUG chr2: Fitting background model for 39 segments 2025-01-31 09:47:07,078 DEBUG Processing 247/825 atomic regions from SNP 73890 to 74490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,225 DEBUG Processing 1045/1109 atomic regions from SNP 313326 to 313926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,240 DEBUG Processing 62/66 atomic regions from SNP 18325 to 18925 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:07,315 DEBUG Processing 248/825 atomic regions from SNP 74190 to 74790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,504 DEBUG Processing 63/66 atomic regions from SNP 18625 to 19225 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:07,542 DEBUG Processing 1046/1109 atomic regions from SNP 313626 to 314226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,587 DEBUG Processing 249/825 atomic regions from SNP 74490 to 75090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,775 DEBUG Processing 64/66 atomic regions from SNP 18925 to 19525 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:07,852 DEBUG Processing 1047/1109 atomic regions from SNP 313926 to 314526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,871 DEBUG Processing 250/825 atomic regions from SNP 74790 to 75390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,045 DEBUG Processing 65/66 atomic regions from SNP 19225 to 19825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:08,129 DEBUG Processing 251/825 atomic regions from SNP 75090 to 75690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,149 DEBUG Processing 1048/1109 atomic regions from SNP 314226 to 314826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,300 DEBUG Processing 66/66 atomic regions from SNP 19525 to 20125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:47:08,379 DEBUG Processing 252/825 atomic regions from SNP 75390 to 75990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,425 DEBUG Unique SNPs positions in subchromosome 1: 20126 2025-01-31 09:47:08,474 DEBUG Processing 1049/1109 atomic regions from SNP 314526 to 315126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,481 DEBUG Subchromosome time: 17.74751976877451, subchromosome SNPs: 20126 2025-01-31 09:47:08,535 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:08,617 DEBUG Processing 253/825 atomic regions from SNP 75690 to 76290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,803 DEBUG Processing 1050/1109 atomic regions from SNP 314826 to 315426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,861 DEBUG Processing 254/825 atomic regions from SNP 75990 to 76590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,112 DEBUG Processing 1051/1109 atomic regions from SNP 315126 to 315726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,113 DEBUG Processing 255/825 atomic regions from SNP 76290 to 76890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,368 DEBUG Processing 256/825 atomic regions from SNP 76590 to 77190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,412 DEBUG Processing 1052/1109 atomic regions from SNP 315426 to 316026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,624 DEBUG Processing 257/825 atomic regions from SNP 76890 to 77490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,709 DEBUG Processing 1053/1109 atomic regions from SNP 315726 to 316326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,908 DEBUG Processing 258/825 atomic regions from SNP 77190 to 77790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,047 DEBUG Processing 1054/1109 atomic regions from SNP 316026 to 316626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,206 DEBUG Processing 259/825 atomic regions from SNP 77490 to 78090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,418 DEBUG Processing 1055/1109 atomic regions from SNP 316326 to 316926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,514 DEBUG Processing 260/825 atomic regions from SNP 77790 to 78390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,764 DEBUG Processing 1056/1109 atomic regions from SNP 316626 to 317226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,790 DEBUG Processing 261/825 atomic regions from SNP 78090 to 78690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,060 DEBUG Processing 262/825 atomic regions from SNP 78390 to 78990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,076 DEBUG Processing 1057/1109 atomic regions from SNP 316926 to 317526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,314 DEBUG Processing 263/825 atomic regions from SNP 78690 to 79290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,376 DEBUG Processing 1058/1109 atomic regions from SNP 317226 to 317826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,560 DEBUG Processing 264/825 atomic regions from SNP 78990 to 79590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,667 DEBUG Processing 1059/1109 atomic regions from SNP 317526 to 318126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,815 DEBUG Processing 265/825 atomic regions from SNP 79290 to 79890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,967 DEBUG Processing 1060/1109 atomic regions from SNP 317826 to 318426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,073 DEBUG Processing 266/825 atomic regions from SNP 79590 to 80190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,260 DEBUG Processing 1061/1109 atomic regions from SNP 318126 to 318726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,323 DEBUG Processing 267/825 atomic regions from SNP 79890 to 80490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,561 DEBUG Processing 1062/1109 atomic regions from SNP 318426 to 319026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,578 DEBUG Processing 268/825 atomic regions from SNP 80190 to 80790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,608 DEBUG Segmenting atomic regions: 2025-01-31 09:47:12,706 DEBUG Processing 1/724 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:12,834 DEBUG Processing 269/825 atomic regions from SNP 80490 to 81090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,861 DEBUG Processing 1063/1109 atomic regions from SNP 318726 to 319326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,942 DEBUG Processing 2/724 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,090 DEBUG Processing 270/825 atomic regions from SNP 80790 to 81390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,155 DEBUG Processing 1064/1109 atomic regions from SNP 319026 to 319626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,174 DEBUG Processing 3/724 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,354 DEBUG Processing 271/825 atomic regions from SNP 81090 to 81690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,403 DEBUG Processing 4/724 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,448 DEBUG Processing 1065/1109 atomic regions from SNP 319326 to 319926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,632 DEBUG Processing 5/724 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,638 DEBUG Processing 272/825 atomic regions from SNP 81390 to 81990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,741 DEBUG Processing 1066/1109 atomic regions from SNP 319626 to 320226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,862 DEBUG Processing 6/724 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:13,891 DEBUG Processing 273/825 atomic regions from SNP 81690 to 82290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,030 DEBUG Processing 1067/1109 atomic regions from SNP 319926 to 320526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,087 DEBUG Processing 7/724 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,144 DEBUG Processing 274/825 atomic regions from SNP 81990 to 82590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,322 DEBUG Processing 1068/1109 atomic regions from SNP 320226 to 320826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,327 DEBUG Processing 8/724 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,393 DEBUG Processing 275/825 atomic regions from SNP 82290 to 82890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,566 DEBUG Processing 9/724 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,604 DEBUG Processing 1069/1109 atomic regions from SNP 320526 to 321126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,641 DEBUG Processing 276/825 atomic regions from SNP 82590 to 83190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,796 DEBUG Processing 10/724 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:14,894 DEBUG Processing 277/825 atomic regions from SNP 82890 to 83490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,898 DEBUG Processing 1070/1109 atomic regions from SNP 320826 to 321426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,011 DEBUG Processing 11/724 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,145 DEBUG Processing 278/825 atomic regions from SNP 83190 to 83790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,191 DEBUG Processing 1071/1109 atomic regions from SNP 321126 to 321726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,229 DEBUG Processing 12/724 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,392 DEBUG Processing 279/825 atomic regions from SNP 83490 to 84090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,461 DEBUG Processing 13/724 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,482 DEBUG Processing 1072/1109 atomic regions from SNP 321426 to 322026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,628 DEBUG Processing 280/825 atomic regions from SNP 83790 to 84390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,684 DEBUG Processing 14/724 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:15,768 DEBUG Processing 1073/1109 atomic regions from SNP 321726 to 322326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,869 DEBUG Processing 281/825 atomic regions from SNP 84090 to 84690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,911 DEBUG Processing 15/724 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,058 DEBUG Processing 1074/1109 atomic regions from SNP 322026 to 322626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,126 DEBUG Processing 282/825 atomic regions from SNP 84390 to 84990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,142 DEBUG Processing 16/724 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,347 DEBUG Processing 1075/1109 atomic regions from SNP 322326 to 322926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,377 DEBUG Processing 283/825 atomic regions from SNP 84690 to 85290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,393 DEBUG Processing 17/724 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,612 DEBUG Processing 18/724 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,625 DEBUG Processing 284/825 atomic regions from SNP 84990 to 85590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,636 DEBUG Processing 1076/1109 atomic regions from SNP 322626 to 323226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,830 DEBUG Processing 19/724 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:16,869 DEBUG Processing 285/825 atomic regions from SNP 85290 to 85890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,938 DEBUG Processing 1077/1109 atomic regions from SNP 322926 to 323526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,047 DEBUG Processing 20/724 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,110 DEBUG Processing 286/825 atomic regions from SNP 85590 to 86190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,238 DEBUG Processing 1078/1109 atomic regions from SNP 323226 to 323826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,272 DEBUG Processing 21/724 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,347 DEBUG Processing 287/825 atomic regions from SNP 85890 to 86490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,496 DEBUG Processing 22/724 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,532 DEBUG Processing 1079/1109 atomic regions from SNP 323526 to 324126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,588 DEBUG Processing 288/825 atomic regions from SNP 86190 to 86790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,722 DEBUG Processing 23/724 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:17,834 DEBUG Processing 1080/1109 atomic regions from SNP 323826 to 324426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,843 DEBUG Processing 289/825 atomic regions from SNP 86490 to 87090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,947 DEBUG Processing 24/724 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,089 DEBUG Processing 290/825 atomic regions from SNP 86790 to 87390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,125 DEBUG Processing 1081/1109 atomic regions from SNP 324126 to 324726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,172 DEBUG Processing 25/724 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,341 DEBUG Processing 291/825 atomic regions from SNP 87090 to 87690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,405 DEBUG Processing 26/724 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,410 DEBUG Processing 1082/1109 atomic regions from SNP 324426 to 325026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,608 DEBUG Processing 292/825 atomic regions from SNP 87390 to 87990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,642 DEBUG Processing 27/724 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,697 DEBUG Processing 1083/1109 atomic regions from SNP 324726 to 325326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,863 DEBUG Processing 28/724 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:18,864 DEBUG Processing 293/825 atomic regions from SNP 87690 to 88290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,014 DEBUG Processing 1084/1109 atomic regions from SNP 325026 to 325626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,084 DEBUG Processing 29/724 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,105 DEBUG Processing 294/825 atomic regions from SNP 87990 to 88590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,311 DEBUG Processing 30/724 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,335 DEBUG Processing 1085/1109 atomic regions from SNP 325326 to 325926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,350 DEBUG Processing 295/825 atomic regions from SNP 88290 to 88890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,541 DEBUG Processing 31/724 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,608 DEBUG Processing 296/825 atomic regions from SNP 88590 to 89190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,660 DEBUG Processing 1086/1109 atomic regions from SNP 325626 to 326226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,769 DEBUG Processing 32/724 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:19,858 DEBUG Processing 297/825 atomic regions from SNP 88890 to 89490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,989 DEBUG Processing 1087/1109 atomic regions from SNP 325926 to 326526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,994 DEBUG Processing 33/724 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,106 DEBUG Processing 298/825 atomic regions from SNP 89190 to 89790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,216 DEBUG Processing 34/724 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,313 DEBUG Processing 1088/1109 atomic regions from SNP 326226 to 326826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,360 DEBUG Processing 299/825 atomic regions from SNP 89490 to 90090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,440 DEBUG Processing 35/724 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,616 DEBUG Processing 300/825 atomic regions from SNP 89790 to 90390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,628 DEBUG Processing 1089/1109 atomic regions from SNP 326526 to 327126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,671 DEBUG Processing 36/724 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,866 DEBUG Processing 301/825 atomic regions from SNP 90090 to 90690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,901 DEBUG Processing 37/724 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:20,958 DEBUG Processing 1090/1109 atomic regions from SNP 326826 to 327426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,116 DEBUG Processing 302/825 atomic regions from SNP 90390 to 90990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,128 DEBUG Processing 38/724 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,294 DEBUG Processing 1091/1109 atomic regions from SNP 327126 to 327726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,357 DEBUG Processing 39/724 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,359 DEBUG Processing 303/825 atomic regions from SNP 90690 to 91290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,451 DEBUG Segmenting atomic regions: 2025-01-31 09:47:21,547 DEBUG Processing 1/708 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,585 DEBUG Processing 40/724 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,600 DEBUG Processing 1092/1109 atomic regions from SNP 327426 to 328026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,622 DEBUG Processing 304/825 atomic regions from SNP 90990 to 91590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,779 DEBUG Processing 2/708 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:21,808 DEBUG Processing 41/724 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:21,891 DEBUG Processing 305/825 atomic regions from SNP 91290 to 91890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,898 DEBUG Processing 1093/1109 atomic regions from SNP 327726 to 328326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,011 DEBUG Processing 3/708 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,021 DEBUG Processing 42/724 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,144 DEBUG Processing 306/825 atomic regions from SNP 91590 to 92190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,193 DEBUG Processing 1094/1109 atomic regions from SNP 328026 to 328626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,241 DEBUG Processing 43/724 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,256 DEBUG Processing 4/708 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,396 DEBUG Processing 307/825 atomic regions from SNP 91890 to 92490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,473 DEBUG Processing 44/724 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,487 DEBUG Processing 5/708 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,493 DEBUG Processing 1095/1109 atomic regions from SNP 328326 to 328926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,636 DEBUG Processing 308/825 atomic regions from SNP 92190 to 92790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,705 DEBUG Processing 45/724 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,729 DEBUG Processing 6/708 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:22,797 DEBUG Processing 1096/1109 atomic regions from SNP 328626 to 329226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,895 DEBUG Processing 309/825 atomic regions from SNP 92490 to 93090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,923 DEBUG Processing 46/724 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:22,979 DEBUG Processing 7/708 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,095 DEBUG Processing 1097/1109 atomic regions from SNP 328926 to 329526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,134 DEBUG Processing 310/825 atomic regions from SNP 92790 to 93390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,139 DEBUG Processing 47/724 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,228 DEBUG Processing 8/708 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,368 DEBUG Processing 48/724 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,392 DEBUG Processing 311/825 atomic regions from SNP 93090 to 93690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,405 DEBUG Processing 1098/1109 atomic regions from SNP 329226 to 329826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,462 DEBUG Processing 9/708 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,599 DEBUG Processing 49/724 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,654 DEBUG Processing 312/825 atomic regions from SNP 93390 to 93990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,702 DEBUG Processing 10/708 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:23,707 DEBUG Processing 1099/1109 atomic regions from SNP 329526 to 330126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,817 DEBUG Processing 50/724 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:23,914 DEBUG Processing 313/825 atomic regions from SNP 93690 to 94290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,948 DEBUG Processing 11/708 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,017 DEBUG Processing 1100/1109 atomic regions from SNP 329826 to 330426 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,037 DEBUG Processing 51/724 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,170 DEBUG Processing 314/825 atomic regions from SNP 93990 to 94590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,184 DEBUG Processing 12/708 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,260 DEBUG Processing 52/724 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,331 DEBUG Processing 1101/1109 atomic regions from SNP 330126 to 330726 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,421 DEBUG Processing 13/708 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,423 DEBUG Processing 315/825 atomic regions from SNP 94290 to 94890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,485 DEBUG Processing 53/724 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,623 DEBUG Processing 1102/1109 atomic regions from SNP 330426 to 331026 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,657 DEBUG Processing 14/708 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,679 DEBUG Processing 316/825 atomic regions from SNP 94590 to 95190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,714 DEBUG Processing 54/724 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:24,897 DEBUG Processing 15/708 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:24,914 DEBUG Processing 1103/1109 atomic regions from SNP 330726 to 331326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,942 DEBUG Processing 317/825 atomic regions from SNP 94890 to 95490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,943 DEBUG Processing 55/724 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,128 DEBUG Processing 16/708 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,181 DEBUG Processing 56/724 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,207 DEBUG Processing 318/825 atomic regions from SNP 95190 to 95790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,216 DEBUG Processing 1104/1109 atomic regions from SNP 331026 to 331626 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,350 DEBUG Processing 17/708 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,418 DEBUG Processing 57/724 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,466 DEBUG Processing 319/825 atomic regions from SNP 95490 to 96090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,523 DEBUG Processing 1105/1109 atomic regions from SNP 331326 to 331926 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,581 DEBUG Processing 18/708 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,646 DEBUG Processing 58/724 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,716 DEBUG Processing 320/825 atomic regions from SNP 95790 to 96390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,812 DEBUG Processing 19/708 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:25,841 DEBUG Processing 1106/1109 atomic regions from SNP 331626 to 332226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,878 DEBUG Processing 59/724 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:25,964 DEBUG Processing 321/825 atomic regions from SNP 96090 to 96690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,046 DEBUG Processing 20/708 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,109 DEBUG Processing 60/724 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,176 DEBUG Processing 1107/1109 atomic regions from SNP 331926 to 332526 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,233 DEBUG Processing 322/825 atomic regions from SNP 96390 to 96990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,275 DEBUG Processing 21/708 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,328 DEBUG Processing 61/724 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,486 DEBUG Processing 1108/1109 atomic regions from SNP 332226 to 332826 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,507 DEBUG Processing 323/825 atomic regions from SNP 96690 to 97290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,518 DEBUG Processing 22/708 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,560 DEBUG Processing 62/724 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,766 DEBUG Processing 23/708 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:26,779 DEBUG Processing 324/825 atomic regions from SNP 96990 to 97590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,819 DEBUG Processing 1109/1109 atomic regions from SNP 332526 to 333126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,821 DEBUG Processing 63/724 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:26,986 DEBUG Unique SNPs positions in subchromosome 1: 333127 2025-01-31 09:47:27,002 DEBUG Processing 24/708 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,041 DEBUG Processing 325/825 atomic regions from SNP 97290 to 97890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,058 DEBUG Processing 64/724 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,231 DEBUG Processing 25/708 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,290 DEBUG Processing 65/724 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,291 DEBUG Processing 326/825 atomic regions from SNP 97590 to 98190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,464 DEBUG Processing 26/708 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,519 DEBUG Processing 66/724 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,544 DEBUG Processing 327/825 atomic regions from SNP 97890 to 98490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,694 DEBUG Processing 27/708 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,755 DEBUG Processing 67/724 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:27,805 DEBUG Processing 328/825 atomic regions from SNP 98190 to 98790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,918 DEBUG Processing 28/708 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:27,987 DEBUG Processing 68/724 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,072 DEBUG Processing 329/825 atomic regions from SNP 98490 to 99090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,143 DEBUG Processing 29/708 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,212 DEBUG Processing 69/724 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,333 DEBUG Processing 330/825 atomic regions from SNP 98790 to 99390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,382 DEBUG Processing 30/708 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,438 DEBUG Processing 70/724 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,588 DEBUG Processing 331/825 atomic regions from SNP 99090 to 99690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,621 DEBUG Processing 31/708 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,669 DEBUG Processing 71/724 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:28,845 DEBUG Processing 332/825 atomic regions from SNP 99390 to 99990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,865 DEBUG Processing 32/708 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:28,904 DEBUG Processing 72/724 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,101 DEBUG Processing 333/825 atomic regions from SNP 99690 to 100290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,106 DEBUG Processing 33/708 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,141 DEBUG Processing 73/724 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,337 DEBUG Processing 34/708 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,359 DEBUG Processing 334/825 atomic regions from SNP 99990 to 100590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,366 DEBUG Processing 74/724 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,572 DEBUG Processing 35/708 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,593 DEBUG Processing 75/724 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,620 DEBUG Processing 335/825 atomic regions from SNP 100290 to 100890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,812 DEBUG Processing 36/708 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:29,823 DEBUG Processing 76/724 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:29,882 DEBUG Processing 336/825 atomic regions from SNP 100590 to 101190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,052 DEBUG Processing 37/708 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,056 DEBUG Processing 77/724 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,139 DEBUG Processing 337/825 atomic regions from SNP 100890 to 101490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,288 DEBUG Processing 78/724 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,291 DEBUG Processing 38/708 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,407 DEBUG Processing 338/825 atomic regions from SNP 101190 to 101790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,511 DEBUG Processing 79/724 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,529 DEBUG Processing 39/708 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,667 DEBUG Processing 339/825 atomic regions from SNP 101490 to 102090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,730 DEBUG Processing 80/724 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,759 DEBUG Processing 40/708 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:30,928 DEBUG Processing 340/825 atomic regions from SNP 101790 to 102390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,959 DEBUG Processing 81/724 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:30,997 DEBUG Processing 41/708 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,185 DEBUG Processing 82/724 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,187 DEBUG Processing 341/825 atomic regions from SNP 102090 to 102690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,242 DEBUG Processing 42/708 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,409 DEBUG Processing 83/724 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,439 DEBUG Processing 342/825 atomic regions from SNP 102390 to 102990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,497 DEBUG Processing 43/708 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,635 DEBUG Processing 84/724 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,687 DEBUG Processing 343/825 atomic regions from SNP 102690 to 103290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,742 DEBUG Processing 44/708 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:31,865 DEBUG Processing 85/724 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:31,941 DEBUG Processing 344/825 atomic regions from SNP 102990 to 103590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,978 DEBUG Processing 45/708 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,096 DEBUG Processing 86/724 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,200 DEBUG Processing 345/825 atomic regions from SNP 103290 to 103890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,230 DEBUG Processing 46/708 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,317 DEBUG Processing 87/724 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,455 DEBUG Processing 346/825 atomic regions from SNP 103590 to 104190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,496 DEBUG Processing 47/708 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,538 DEBUG Processing 88/724 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,711 DEBUG Processing 347/825 atomic regions from SNP 103890 to 104490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,737 DEBUG Processing 48/708 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,763 DEBUG Processing 89/724 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:32,968 DEBUG Processing 348/825 atomic regions from SNP 104190 to 104790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,971 DEBUG Processing 49/708 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:32,987 DEBUG Processing 90/724 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,214 DEBUG Processing 50/708 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,216 DEBUG Processing 91/724 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,229 DEBUG Processing 349/825 atomic regions from SNP 104490 to 105090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,445 DEBUG Processing 92/724 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,455 DEBUG Processing 51/708 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,494 DEBUG Processing 350/825 atomic regions from SNP 104790 to 105390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,669 DEBUG Processing 93/724 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,692 DEBUG Processing 52/708 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:33,755 DEBUG Processing 351/825 atomic regions from SNP 105090 to 105690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,893 DEBUG Processing 94/724 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:33,917 DEBUG Processing 53/708 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,014 DEBUG Processing 352/825 atomic regions from SNP 105390 to 105990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,123 DEBUG Processing 95/724 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,151 DEBUG Processing 54/708 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,258 DEBUG Segmenting atomic regions: 2025-01-31 09:47:34,273 DEBUG Processing 353/825 atomic regions from SNP 105690 to 106290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,358 DEBUG Processing 96/724 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,362 DEBUG Processing 1/686 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,386 DEBUG Processing 55/708 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,530 DEBUG Processing 354/825 atomic regions from SNP 105990 to 106590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,588 DEBUG Processing 97/724 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,597 DEBUG Processing 2/686 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,638 DEBUG Processing 56/708 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:34,783 DEBUG Processing 355/825 atomic regions from SNP 106290 to 106890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,826 DEBUG Processing 98/724 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:34,835 DEBUG Processing 3/686 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:34,886 DEBUG Processing 57/708 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,038 DEBUG Processing 356/825 atomic regions from SNP 106590 to 107190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,082 DEBUG Processing 4/686 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,095 DEBUG Processing 99/724 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,133 DEBUG Processing 58/708 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,291 DEBUG Processing 357/825 atomic regions from SNP 106890 to 107490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,327 DEBUG Processing 5/686 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,341 DEBUG Processing 100/724 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,371 DEBUG Processing 59/708 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,571 DEBUG Processing 358/825 atomic regions from SNP 107190 to 107790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,574 DEBUG Processing 101/724 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,585 DEBUG Processing 6/686 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,609 DEBUG Processing 60/708 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:35,808 DEBUG Processing 102/724 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:35,845 DEBUG Processing 359/825 atomic regions from SNP 107490 to 108090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,847 DEBUG Processing 7/686 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:35,850 DEBUG Processing 61/708 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,048 DEBUG Processing 103/724 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,088 DEBUG Processing 8/686 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,090 DEBUG Processing 62/708 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,106 DEBUG Processing 360/825 atomic regions from SNP 107790 to 108390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,285 DEBUG Processing 104/724 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,333 DEBUG Processing 63/708 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,360 DEBUG Processing 9/686 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,366 DEBUG Processing 361/825 atomic regions from SNP 108090 to 108690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,516 DEBUG Processing 105/724 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,571 DEBUG Processing 64/708 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,623 DEBUG Processing 362/825 atomic regions from SNP 108390 to 108990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,623 DEBUG Processing 10/686 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,754 DEBUG Processing 106/724 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:36,802 DEBUG Processing 65/708 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:36,880 DEBUG Processing 363/825 atomic regions from SNP 108690 to 109290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,884 DEBUG Processing 11/686 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:36,999 DEBUG Processing 107/724 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,043 DEBUG Processing 66/708 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,136 DEBUG Processing 364/825 atomic regions from SNP 108990 to 109590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,148 DEBUG Processing 12/686 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,250 DEBUG Processing 108/724 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,303 DEBUG Processing 67/708 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,390 DEBUG Processing 13/686 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,396 DEBUG Processing 365/825 atomic regions from SNP 109290 to 109890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,482 DEBUG Processing 109/724 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,549 DEBUG Processing 68/708 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,658 DEBUG Processing 366/825 atomic regions from SNP 109590 to 110190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,658 DEBUG Processing 14/686 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,715 DEBUG Processing 110/724 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:37,784 DEBUG Processing 69/708 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:37,910 DEBUG Processing 15/686 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:37,921 DEBUG Processing 367/825 atomic regions from SNP 109890 to 110490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,957 DEBUG Processing 111/724 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,024 DEBUG Processing 70/708 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,150 DEBUG Processing 16/686 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,185 DEBUG Processing 368/825 atomic regions from SNP 110190 to 110790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,197 DEBUG Processing 112/724 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,261 DEBUG Processing 71/708 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,390 DEBUG Processing 17/686 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,437 DEBUG Processing 113/724 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,453 DEBUG Processing 369/825 atomic regions from SNP 110490 to 111090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,501 DEBUG Processing 72/708 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,632 DEBUG Processing 18/686 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,676 DEBUG Processing 114/724 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,722 DEBUG Processing 370/825 atomic regions from SNP 110790 to 111390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,743 DEBUG Processing 73/708 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:38,876 DEBUG Processing 19/686 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:38,918 DEBUG Processing 115/724 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:38,993 DEBUG Processing 371/825 atomic regions from SNP 111090 to 111690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,995 DEBUG Processing 74/708 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,117 DEBUG Processing 20/686 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,161 DEBUG Processing 116/724 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,243 DEBUG Processing 75/708 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,263 DEBUG Processing 372/825 atomic regions from SNP 111390 to 111990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,374 DEBUG Processing 21/686 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,399 DEBUG Processing 117/724 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,483 DEBUG Processing 76/708 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,525 DEBUG Processing 373/825 atomic regions from SNP 111690 to 112290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,630 DEBUG Processing 118/724 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,646 DEBUG Processing 22/686 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,716 DEBUG Processing 77/708 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:39,787 DEBUG Processing 374/825 atomic regions from SNP 111990 to 112590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,868 DEBUG Processing 119/724 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:39,917 DEBUG Processing 23/686 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:39,947 DEBUG Processing 78/708 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,054 DEBUG Processing 375/825 atomic regions from SNP 112290 to 112890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,111 DEBUG Processing 120/724 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,180 DEBUG Processing 79/708 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,189 DEBUG Processing 24/686 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,338 DEBUG Processing 376/825 atomic regions from SNP 112590 to 113190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,352 DEBUG Processing 121/724 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,422 DEBUG Processing 80/708 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,445 DEBUG Processing 25/686 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,587 DEBUG Processing 122/724 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,591 DEBUG Processing 377/825 atomic regions from SNP 112890 to 113490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,675 DEBUG Processing 81/708 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:40,686 DEBUG Processing 26/686 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,821 DEBUG Processing 123/724 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:40,845 DEBUG Processing 378/825 atomic regions from SNP 113190 to 113790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,921 DEBUG Processing 27/686 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:40,921 DEBUG Processing 82/708 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,061 DEBUG Processing 124/724 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,107 DEBUG Processing 379/825 atomic regions from SNP 113490 to 114090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,164 DEBUG Processing 83/708 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,177 DEBUG Processing 28/686 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,294 DEBUG Processing 125/724 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,411 DEBUG Processing 380/825 atomic regions from SNP 113790 to 114390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,414 DEBUG Processing 84/708 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,451 DEBUG Processing 29/686 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,518 DEBUG Processing 126/724 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,663 DEBUG Processing 85/708 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,702 DEBUG Processing 30/686 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,707 DEBUG Processing 381/825 atomic regions from SNP 114090 to 114690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,753 DEBUG Processing 127/724 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,903 DEBUG Processing 86/708 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:41,970 DEBUG Processing 31/686 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:41,996 DEBUG Processing 128/724 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:41,998 DEBUG Processing 382/825 atomic regions from SNP 114390 to 114990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,139 DEBUG Processing 87/708 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,235 DEBUG Processing 129/724 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,245 DEBUG Processing 32/686 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,276 DEBUG Processing 383/825 atomic regions from SNP 114690 to 115290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,377 DEBUG Processing 88/708 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,466 DEBUG Processing 130/724 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,501 DEBUG Processing 33/686 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,543 DEBUG Processing 384/825 atomic regions from SNP 114990 to 115590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,631 DEBUG Processing 89/708 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,699 DEBUG Processing 131/724 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:42,756 DEBUG Processing 34/686 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:42,813 DEBUG Processing 385/825 atomic regions from SNP 115290 to 115890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,883 DEBUG Processing 90/708 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:42,942 DEBUG Processing 132/724 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,013 DEBUG Processing 35/686 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,107 DEBUG Processing 386/825 atomic regions from SNP 115590 to 116190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,127 DEBUG Processing 91/708 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,175 DEBUG Processing 133/724 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,250 DEBUG Processing 36/686 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,366 DEBUG Processing 92/708 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,395 DEBUG Processing 134/724 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,396 DEBUG Processing 387/825 atomic regions from SNP 115890 to 116490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,487 DEBUG Processing 37/686 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,608 DEBUG Processing 93/708 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,620 DEBUG Processing 135/724 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,664 DEBUG Processing 388/825 atomic regions from SNP 116190 to 116790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,730 DEBUG Processing 38/686 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:43,849 DEBUG Processing 94/708 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:43,856 DEBUG Processing 136/724 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:43,933 DEBUG Processing 389/825 atomic regions from SNP 116490 to 117090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,987 DEBUG Processing 39/686 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,087 DEBUG Processing 95/708 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,105 DEBUG Processing 137/724 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,214 DEBUG Processing 390/825 atomic regions from SNP 116790 to 117390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,255 DEBUG Processing 40/686 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,329 DEBUG Processing 96/708 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,341 DEBUG Processing 138/724 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,475 DEBUG Processing 391/825 atomic regions from SNP 117090 to 117690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,518 DEBUG Processing 41/686 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,583 DEBUG Processing 139/724 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,584 DEBUG Processing 97/708 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:44,738 DEBUG Processing 392/825 atomic regions from SNP 117390 to 117990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,789 DEBUG Processing 42/686 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:44,825 DEBUG Processing 140/724 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:44,857 DEBUG Processing 98/708 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,004 DEBUG Processing 393/825 atomic regions from SNP 117690 to 118290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,051 DEBUG Processing 43/686 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,062 DEBUG Processing 141/724 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,104 DEBUG Processing 99/708 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,275 DEBUG Processing 394/825 atomic regions from SNP 117990 to 118590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,295 DEBUG Processing 44/686 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,298 DEBUG Processing 142/724 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,370 DEBUG Processing 100/708 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,529 DEBUG Processing 143/724 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,530 DEBUG Processing 45/686 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,543 DEBUG Processing 395/825 atomic regions from SNP 118290 to 118890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,615 DEBUG Processing 101/708 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,758 DEBUG Processing 144/724 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:45,761 DEBUG Processing 46/686 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:45,812 DEBUG Processing 396/825 atomic regions from SNP 118590 to 119190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,869 DEBUG Processing 102/708 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:45,996 DEBUG Processing 145/724 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,002 DEBUG Processing 47/686 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,076 DEBUG Processing 397/825 atomic regions from SNP 118890 to 119490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,123 DEBUG Processing 103/708 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,245 DEBUG Processing 146/724 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,254 DEBUG Processing 48/686 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,342 DEBUG Processing 398/825 atomic regions from SNP 119190 to 119790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,381 DEBUG Processing 104/708 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,489 DEBUG Processing 147/724 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,499 DEBUG Processing 49/686 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,605 DEBUG Processing 399/825 atomic regions from SNP 119490 to 120090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,649 DEBUG Processing 105/708 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,728 DEBUG Processing 148/724 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,739 DEBUG Processing 50/686 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:46,870 DEBUG Processing 400/825 atomic regions from SNP 119790 to 120390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,894 DEBUG Processing 106/708 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:46,970 DEBUG Processing 149/724 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:46,981 DEBUG Processing 51/686 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,131 DEBUG Processing 401/825 atomic regions from SNP 120090 to 120690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,141 DEBUG Processing 107/708 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,214 DEBUG Processing 150/724 atomic regions from SNP 44849 to 45449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,227 DEBUG Processing 52/686 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,383 DEBUG Processing 108/708 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,392 DEBUG Processing 402/825 atomic regions from SNP 120390 to 120990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,455 DEBUG Processing 151/724 atomic regions from SNP 45149 to 45749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,481 DEBUG Processing 53/686 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,629 DEBUG Processing 109/708 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,663 DEBUG Processing 403/825 atomic regions from SNP 120690 to 121290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,695 DEBUG Processing 152/724 atomic regions from SNP 45449 to 46049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,749 DEBUG Processing 54/686 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:47,868 DEBUG Processing 110/708 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:47,933 DEBUG Processing 404/825 atomic regions from SNP 120990 to 121590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,937 DEBUG Processing 153/724 atomic regions from SNP 45749 to 46349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:47,991 DEBUG Processing 55/686 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,114 DEBUG Processing 111/708 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,181 DEBUG Processing 154/724 atomic regions from SNP 46049 to 46649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,208 DEBUG Processing 405/825 atomic regions from SNP 121290 to 121890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,234 DEBUG Processing 56/686 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,353 DEBUG Processing 112/708 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,402 DEBUG Processing 155/724 atomic regions from SNP 46349 to 46949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,461 DEBUG Processing 57/686 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,463 DEBUG Processing 406/825 atomic regions from SNP 121590 to 122190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,593 DEBUG Processing 113/708 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,631 DEBUG Processing 156/724 atomic regions from SNP 46649 to 47249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,686 DEBUG Processing 58/686 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,718 DEBUG Processing 407/825 atomic regions from SNP 121890 to 122490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,835 DEBUG Processing 114/708 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:48,867 DEBUG Processing 157/724 atomic regions from SNP 46949 to 47549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:48,916 DEBUG Processing 59/686 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:48,967 DEBUG Processing 408/825 atomic regions from SNP 122190 to 122790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,077 DEBUG Processing 115/708 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,099 DEBUG Processing 158/724 atomic regions from SNP 47249 to 47849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,155 DEBUG Processing 60/686 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,223 DEBUG Processing 409/825 atomic regions from SNP 122490 to 123090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,319 DEBUG Processing 116/708 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,330 DEBUG Processing 159/724 atomic regions from SNP 47549 to 48149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,402 DEBUG Processing 61/686 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,469 DEBUG Processing 410/825 atomic regions from SNP 122790 to 123390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,559 DEBUG Processing 117/708 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,562 DEBUG Processing 160/724 atomic regions from SNP 47849 to 48449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,654 DEBUG Processing 62/686 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,718 DEBUG Processing 411/825 atomic regions from SNP 123090 to 123690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,790 DEBUG Processing 118/708 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:49,798 DEBUG Processing 161/724 atomic regions from SNP 48149 to 48749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:49,897 DEBUG Processing 63/686 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:49,972 DEBUG Processing 412/825 atomic regions from SNP 123390 to 123990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,026 DEBUG Processing 162/724 atomic regions from SNP 48449 to 49049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,045 DEBUG Processing 119/708 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,132 DEBUG Processing 64/686 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,229 DEBUG Processing 413/825 atomic regions from SNP 123690 to 124290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,252 DEBUG Processing 163/724 atomic regions from SNP 48749 to 49349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,303 DEBUG Processing 120/708 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,364 DEBUG Processing 65/686 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,482 DEBUG Processing 164/724 atomic regions from SNP 49049 to 49649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,493 DEBUG Processing 414/825 atomic regions from SNP 123990 to 124590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,551 DEBUG Processing 121/708 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,599 DEBUG Processing 66/686 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,718 DEBUG Processing 165/724 atomic regions from SNP 49349 to 49949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:50,751 DEBUG Processing 415/825 atomic regions from SNP 124290 to 124890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,795 DEBUG Processing 122/708 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:50,835 DEBUG Processing 67/686 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:50,948 DEBUG Processing 166/724 atomic regions from SNP 49649 to 50249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,013 DEBUG Processing 416/825 atomic regions from SNP 124590 to 125190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,035 DEBUG Processing 123/708 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,072 DEBUG Processing 68/686 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,175 DEBUG Processing 167/724 atomic regions from SNP 49949 to 50549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,273 DEBUG Processing 417/825 atomic regions from SNP 124890 to 125490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,276 DEBUG Processing 124/708 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,309 DEBUG Processing 69/686 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,409 DEBUG Processing 168/724 atomic regions from SNP 50249 to 50849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,514 DEBUG Processing 125/708 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,534 DEBUG Processing 418/825 atomic regions from SNP 125190 to 125790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,546 DEBUG Processing 70/686 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,648 DEBUG Processing 169/724 atomic regions from SNP 50549 to 51149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,754 DEBUG Processing 126/708 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:51,784 DEBUG Processing 71/686 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:51,796 DEBUG Processing 419/825 atomic regions from SNP 125490 to 126090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,888 DEBUG Processing 170/724 atomic regions from SNP 50849 to 51449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:51,991 DEBUG Processing 127/708 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,028 DEBUG Processing 72/686 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,060 DEBUG Processing 420/825 atomic regions from SNP 125790 to 126390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,121 DEBUG Processing 171/724 atomic regions from SNP 51149 to 51749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,260 DEBUG Processing 128/708 atomic regions from SNP 38227 to 38828 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,275 DEBUG Processing 73/686 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,326 DEBUG Processing 421/825 atomic regions from SNP 126090 to 126690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,353 DEBUG Processing 172/724 atomic regions from SNP 51449 to 52049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,544 DEBUG Processing 74/686 atomic regions from SNP 21973 to 22573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,545 DEBUG Processing 129/708 atomic regions from SNP 38528 to 39129 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,595 DEBUG Processing 173/724 atomic regions from SNP 51749 to 52349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,604 DEBUG Processing 422/825 atomic regions from SNP 126390 to 126990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,783 DEBUG Processing 130/708 atomic regions from SNP 38829 to 39430 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:52,788 DEBUG Processing 75/686 atomic regions from SNP 22273 to 22873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:52,836 DEBUG Processing 174/724 atomic regions from SNP 52049 to 52649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:52,864 DEBUG Processing 423/825 atomic regions from SNP 126690 to 127290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,020 DEBUG Processing 131/708 atomic regions from SNP 39130 to 39731 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,029 DEBUG Processing 76/686 atomic regions from SNP 22573 to 23173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,070 DEBUG Processing 175/724 atomic regions from SNP 52349 to 52949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,118 DEBUG Processing 424/825 atomic regions from SNP 126990 to 127590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,256 DEBUG Processing 132/708 atomic regions from SNP 39431 to 40032 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,274 DEBUG Processing 77/686 atomic regions from SNP 22873 to 23473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,305 DEBUG Processing 176/724 atomic regions from SNP 52649 to 53249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,377 DEBUG Processing 425/825 atomic regions from SNP 127290 to 127890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,493 DEBUG Processing 133/708 atomic regions from SNP 39732 to 40333 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,545 DEBUG Processing 78/686 atomic regions from SNP 23173 to 23773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,545 DEBUG Processing 177/724 atomic regions from SNP 52949 to 53549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,633 DEBUG Processing 426/825 atomic regions from SNP 127590 to 128190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,733 DEBUG Processing 134/708 atomic regions from SNP 40033 to 40634 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:53,793 DEBUG Processing 178/724 atomic regions from SNP 53249 to 53849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:53,807 DEBUG Processing 79/686 atomic regions from SNP 23473 to 24073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:53,890 DEBUG Processing 427/825 atomic regions from SNP 127890 to 128490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,975 DEBUG Processing 135/708 atomic regions from SNP 40334 to 40935 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,038 DEBUG Processing 179/724 atomic regions from SNP 53549 to 54149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,053 DEBUG Processing 80/686 atomic regions from SNP 23773 to 24373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,146 DEBUG Processing 428/825 atomic regions from SNP 128190 to 128790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,217 DEBUG Processing 136/708 atomic regions from SNP 40635 to 41236 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,279 DEBUG Processing 180/724 atomic regions from SNP 53849 to 54449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,296 DEBUG Processing 81/686 atomic regions from SNP 24073 to 24673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,415 DEBUG Processing 429/825 atomic regions from SNP 128490 to 129090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,461 DEBUG Processing 137/708 atomic regions from SNP 40936 to 41537 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,518 DEBUG Processing 181/724 atomic regions from SNP 54149 to 54749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,534 DEBUG Processing 82/686 atomic regions from SNP 24373 to 24973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,676 DEBUG Processing 430/825 atomic regions from SNP 128790 to 129390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,703 DEBUG Processing 138/708 atomic regions from SNP 41237 to 41838 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:54,761 DEBUG Processing 182/724 atomic regions from SNP 54449 to 55049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:54,777 DEBUG Processing 83/686 atomic regions from SNP 24673 to 25273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:54,926 DEBUG Subchromosome time: 415.32015703246, subchromosome SNPs: 333127 2025-01-31 09:47:54,927 DEBUG Estimated BADs: [0.61, 5.52, 0.92, 11.04, 0.46, 7.36, 0.61, 3.68, 1.84, 18.40, 0.61, 1.84, 3.68, 9.20, 0.92, 3.68, 14.72, 1.84, 18.40, 3.68, 9.20, 0.61, 3.68, 0.37, 5.52, 1.84, 0.61, 1.84, 5.52, 1.84, 0.46, 3.68, 0.31, 0.92, 3.68, 18.40, 3.68, 1.84, 7.36, 3.68, 9.20, 3.68] SNP counts: [10131, 813, 10267, 98, 23477, 203, 4178, 10854, 8761, 138, 12691, 11085, 11463, 1160, 12312, 3832, 2188, 18020, 753, 11765, 1929, 19380, 3509, 16257, 3384, 4997, 4390, 9515, 10727, 5925, 6305, 1189, 5983, 4582, 36611, 547, 1544, 10563, 5602, 17696, 2101, 6202] SNP IDs counts: [10131, 813, 10267, 98, 23477, 203, 4178, 10854, 8761, 138, 12691, 11085, 11463, 1160, 12312, 3832, 2188, 18020, 753, 11765, 1929, 19380, 3509, 16257, 3384, 4997, 4390, 9515, 10727, 5925, 6305, 1189, 5983, 4582, 36611, 547, 1544, 10563, 5602, 17696, 2101, 6202] Critical gap: 765922bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.97Mbp, 16.09Mbp, 16.14Mbp, 30.86Mbp, 30.99Mbp, 33.52Mbp, 39.36Mbp, 44.10Mbp, 44.17Mbp, 52.10Mbp, 58.34Mbp, 64.61Mbp, 65.22Mbp, 72.20Mbp, 74.27Mbp, 75.49Mbp, 86.14Mbp, 86.54Mbp, 92.83Mbp, 93.84Mbp, 105.80Mbp, 107.79Mbp, 118.31Mbp, 120.09Mbp, 122.89Mbp, 125.43Mbp, 130.69Mbp, 136.32Mbp, 139.60Mbp, 143.70Mbp, 144.41Mbp, 148.34Mbp, 151.07Mbp, 171.03Mbp, 171.33Mbp, 172.19Mbp, 178.29Mbp, 181.25Mbp, 190.82Mbp, 191.93Mbp, 195.47Mbp] 2025-01-31 09:47:54,927 DEBUG chr1 time: 415.32089077681303 s 2025-01-31 09:47:54,934 DEBUG Processing 431/825 atomic regions from SNP 129090 to 129690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,940 DEBUG Processing 139/708 atomic regions from SNP 41538 to 42139 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,003 DEBUG Processing 183/724 atomic regions from SNP 54749 to 55349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,018 DEBUG Processing 84/686 atomic regions from SNP 24973 to 25573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,148 DEBUG chr1: Fitting background model for 42 segments 2025-01-31 09:47:55,172 DEBUG Processing 140/708 atomic regions from SNP 41839 to 42440 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,188 DEBUG Processing 432/825 atomic regions from SNP 129390 to 129990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,245 DEBUG Processing 184/724 atomic regions from SNP 55049 to 55649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,264 DEBUG Processing 85/686 atomic regions from SNP 25273 to 25873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,407 DEBUG Processing 141/708 atomic regions from SNP 42140 to 42741 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,442 DEBUG Processing 433/825 atomic regions from SNP 129690 to 130290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,481 DEBUG Processing 185/724 atomic regions from SNP 55349 to 55949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,505 DEBUG Processing 86/686 atomic regions from SNP 25573 to 26173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,649 DEBUG Processing 142/708 atomic regions from SNP 42441 to 43042 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,701 DEBUG Processing 434/825 atomic regions from SNP 129990 to 130590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,718 DEBUG Processing 186/724 atomic regions from SNP 55649 to 56249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,743 DEBUG Processing 87/686 atomic regions from SNP 25873 to 26473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:55,888 DEBUG Processing 143/708 atomic regions from SNP 42742 to 43343 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:55,955 DEBUG Processing 187/724 atomic regions from SNP 55949 to 56549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:55,964 DEBUG Processing 435/825 atomic regions from SNP 130290 to 130890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,984 DEBUG Processing 88/686 atomic regions from SNP 26173 to 26773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,122 DEBUG Processing 144/708 atomic regions from SNP 43043 to 43644 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,202 DEBUG Processing 188/724 atomic regions from SNP 56249 to 56849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,219 DEBUG Processing 436/825 atomic regions from SNP 130590 to 131190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,233 DEBUG Processing 89/686 atomic regions from SNP 26473 to 27073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,356 DEBUG Processing 145/708 atomic regions from SNP 43344 to 43945 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,434 DEBUG Processing 189/724 atomic regions from SNP 56549 to 57149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,465 DEBUG Processing 437/825 atomic regions from SNP 130890 to 131490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,467 DEBUG Processing 90/686 atomic regions from SNP 26773 to 27373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,588 DEBUG Processing 146/708 atomic regions from SNP 43645 to 44246 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,666 DEBUG Processing 190/724 atomic regions from SNP 56849 to 57449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,702 DEBUG Processing 91/686 atomic regions from SNP 27073 to 27673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,724 DEBUG Processing 438/825 atomic regions from SNP 131190 to 131790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,813 DEBUG Processing 147/708 atomic regions from SNP 43946 to 44547 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:56,901 DEBUG Processing 191/724 atomic regions from SNP 57149 to 57749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:56,938 DEBUG Processing 92/686 atomic regions from SNP 27373 to 27973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:56,986 DEBUG Processing 439/825 atomic regions from SNP 131490 to 132090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,043 DEBUG Processing 148/708 atomic regions from SNP 44247 to 44848 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,128 DEBUG Processing 192/724 atomic regions from SNP 57449 to 58049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,169 DEBUG Processing 93/686 atomic regions from SNP 27673 to 28273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,285 DEBUG Processing 440/825 atomic regions from SNP 131790 to 132390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,310 DEBUG Processing 149/708 atomic regions from SNP 44548 to 45149 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,384 DEBUG Processing 193/724 atomic regions from SNP 57749 to 58349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,423 DEBUG Processing 94/686 atomic regions from SNP 27973 to 28573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,613 DEBUG Processing 150/708 atomic regions from SNP 44849 to 45450 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:57,615 DEBUG Processing 441/825 atomic regions from SNP 132090 to 132690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,689 DEBUG Processing 194/724 atomic regions from SNP 58049 to 58649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:57,735 DEBUG Processing 95/686 atomic regions from SNP 28273 to 28873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:57,944 DEBUG Processing 151/708 atomic regions from SNP 45150 to 45751 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,003 DEBUG Processing 442/825 atomic regions from SNP 132390 to 132990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,034 DEBUG Processing 195/724 atomic regions from SNP 58349 to 58949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,085 DEBUG Processing 96/686 atomic regions from SNP 28573 to 29173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,280 DEBUG Processing 152/708 atomic regions from SNP 45451 to 46052 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,386 DEBUG Processing 196/724 atomic regions from SNP 58649 to 59249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,419 DEBUG Processing 443/825 atomic regions from SNP 132690 to 133290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,441 DEBUG Processing 97/686 atomic regions from SNP 28873 to 29473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,610 DEBUG Processing 153/708 atomic regions from SNP 45752 to 46353 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,649 DEBUG Processing 197/724 atomic regions from SNP 58949 to 59549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,696 DEBUG Processing 98/686 atomic regions from SNP 29173 to 29773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:58,726 DEBUG Processing 444/825 atomic regions from SNP 132990 to 133590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,864 DEBUG Processing 154/708 atomic regions from SNP 46053 to 46654 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:58,891 DEBUG Processing 198/724 atomic regions from SNP 59249 to 59849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:58,934 DEBUG Processing 99/686 atomic regions from SNP 29473 to 30073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,029 DEBUG Processing 445/825 atomic regions from SNP 133290 to 133890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,106 DEBUG Processing 155/708 atomic regions from SNP 46354 to 46955 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,123 DEBUG Processing 199/724 atomic regions from SNP 59549 to 60149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,169 DEBUG Processing 100/686 atomic regions from SNP 29773 to 30373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,319 DEBUG Processing 446/825 atomic regions from SNP 133590 to 134190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,361 DEBUG Processing 156/708 atomic regions from SNP 46655 to 47256 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,379 DEBUG Processing 200/724 atomic regions from SNP 59849 to 60449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,431 DEBUG Processing 101/686 atomic regions from SNP 30073 to 30673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,620 DEBUG Processing 157/708 atomic regions from SNP 46956 to 47557 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,622 DEBUG Processing 447/825 atomic regions from SNP 133890 to 134490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,644 DEBUG Processing 201/724 atomic regions from SNP 60149 to 60749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,679 DEBUG Processing 102/686 atomic regions from SNP 30373 to 30973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:47:59,962 DEBUG Processing 158/708 atomic regions from SNP 47257 to 47858 for chr8 (subchromosome 1 of 1). 2025-01-31 09:47:59,972 DEBUG Processing 202/724 atomic regions from SNP 60449 to 61049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:47:59,983 DEBUG Processing 448/825 atomic regions from SNP 134190 to 134790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,003 DEBUG Processing 103/686 atomic regions from SNP 30673 to 31273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,314 DEBUG Processing 159/708 atomic regions from SNP 47558 to 48159 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,320 DEBUG Processing 203/724 atomic regions from SNP 60749 to 61349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,353 DEBUG Processing 104/686 atomic regions from SNP 30973 to 31573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,361 DEBUG Processing 449/825 atomic regions from SNP 134490 to 135090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,659 DEBUG Processing 204/724 atomic regions from SNP 61049 to 61649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:00,670 DEBUG Processing 160/708 atomic regions from SNP 47859 to 48460 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:00,728 DEBUG Processing 105/686 atomic regions from SNP 31273 to 31873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:00,744 DEBUG Processing 450/825 atomic regions from SNP 134790 to 135390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,034 DEBUG Processing 205/724 atomic regions from SNP 61349 to 61949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,036 DEBUG Processing 161/708 atomic regions from SNP 48160 to 48761 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,129 DEBUG Processing 106/686 atomic regions from SNP 31573 to 32173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,146 DEBUG Processing 451/825 atomic regions from SNP 135090 to 135690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,421 DEBUG Processing 206/724 atomic regions from SNP 61649 to 62249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,434 DEBUG Processing 162/708 atomic regions from SNP 48461 to 49062 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,512 DEBUG Processing 107/686 atomic regions from SNP 31873 to 32473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,513 DEBUG Processing 452/825 atomic regions from SNP 135390 to 135990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,655 DEBUG Processing 207/724 atomic regions from SNP 61949 to 62549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,686 DEBUG Processing 163/708 atomic regions from SNP 48762 to 49363 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:01,792 DEBUG Processing 108/686 atomic regions from SNP 32173 to 32773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:01,793 DEBUG Processing 453/825 atomic regions from SNP 135690 to 136290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,877 DEBUG Processing 208/724 atomic regions from SNP 62249 to 62849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:01,949 DEBUG Processing 164/708 atomic regions from SNP 49063 to 49664 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,050 DEBUG Processing 109/686 atomic regions from SNP 32473 to 33073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,062 DEBUG Processing 454/825 atomic regions from SNP 135990 to 136590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,101 DEBUG Processing 209/724 atomic regions from SNP 62549 to 63149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,172 DEBUG Processing 165/708 atomic regions from SNP 49364 to 49965 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,323 DEBUG Processing 110/686 atomic regions from SNP 32773 to 33373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,333 DEBUG Processing 455/825 atomic regions from SNP 136290 to 136890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,345 DEBUG Processing 210/724 atomic regions from SNP 62849 to 63449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,419 DEBUG Processing 166/708 atomic regions from SNP 49665 to 50266 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,585 DEBUG Processing 111/686 atomic regions from SNP 33073 to 33673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,596 DEBUG Processing 456/825 atomic regions from SNP 136590 to 137190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,605 DEBUG Processing 211/724 atomic regions from SNP 63149 to 63749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,656 DEBUG Processing 167/708 atomic regions from SNP 49966 to 50567 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:02,840 DEBUG Processing 112/686 atomic regions from SNP 33373 to 33973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:02,858 DEBUG Processing 212/724 atomic regions from SNP 63449 to 64049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:02,867 DEBUG Processing 457/825 atomic regions from SNP 136890 to 137490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,893 DEBUG Processing 168/708 atomic regions from SNP 50267 to 50868 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,101 DEBUG Processing 213/724 atomic regions from SNP 63749 to 64349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,113 DEBUG Processing 113/686 atomic regions from SNP 33673 to 34273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,134 DEBUG Processing 169/708 atomic regions from SNP 50568 to 51169 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,148 DEBUG Processing 458/825 atomic regions from SNP 137190 to 137790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,328 DEBUG Processing 214/724 atomic regions from SNP 64049 to 64649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,374 DEBUG Processing 170/708 atomic regions from SNP 50869 to 51470 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,379 DEBUG Processing 114/686 atomic regions from SNP 33973 to 34573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,414 DEBUG Processing 459/825 atomic regions from SNP 137490 to 138090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,562 DEBUG Processing 215/724 atomic regions from SNP 64349 to 64949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,616 DEBUG Processing 171/708 atomic regions from SNP 51170 to 51771 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,655 DEBUG Processing 115/686 atomic regions from SNP 34273 to 34873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:03,704 DEBUG Processing 460/825 atomic regions from SNP 137790 to 138390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,797 DEBUG Processing 216/724 atomic regions from SNP 64649 to 65249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:03,865 DEBUG Processing 172/708 atomic regions from SNP 51471 to 52072 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:03,911 DEBUG Processing 116/686 atomic regions from SNP 34573 to 35173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,004 DEBUG Processing 461/825 atomic regions from SNP 138090 to 138690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,056 DEBUG Processing 217/724 atomic regions from SNP 64949 to 65549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,117 DEBUG Processing 173/708 atomic regions from SNP 51772 to 52373 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,140 DEBUG Processing 117/686 atomic regions from SNP 34873 to 35473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,266 DEBUG Processing 462/825 atomic regions from SNP 138390 to 138990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,281 DEBUG Processing 218/724 atomic regions from SNP 65249 to 65849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,366 DEBUG Processing 174/708 atomic regions from SNP 52073 to 52674 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,370 DEBUG Processing 118/686 atomic regions from SNP 35173 to 35773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,495 DEBUG Processing 219/724 atomic regions from SNP 65549 to 66149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,555 DEBUG Processing 463/825 atomic regions from SNP 138690 to 139290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,598 DEBUG Processing 119/686 atomic regions from SNP 35473 to 36073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,607 DEBUG Processing 175/708 atomic regions from SNP 52374 to 52975 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,707 DEBUG Processing 220/724 atomic regions from SNP 65849 to 66449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:04,819 DEBUG Processing 120/686 atomic regions from SNP 35773 to 36373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:04,844 DEBUG Processing 464/825 atomic regions from SNP 138990 to 139590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,850 DEBUG Processing 176/708 atomic regions from SNP 52675 to 53276 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:04,948 DEBUG Processing 221/724 atomic regions from SNP 66149 to 66749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,033 DEBUG Processing 121/686 atomic regions from SNP 36073 to 36673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,083 DEBUG Processing 177/708 atomic regions from SNP 52976 to 53577 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,116 DEBUG Processing 465/825 atomic regions from SNP 139290 to 139890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,176 DEBUG Processing 222/724 atomic regions from SNP 66449 to 67049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,278 DEBUG Processing 122/686 atomic regions from SNP 36373 to 36973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,306 DEBUG Processing 178/708 atomic regions from SNP 53277 to 53878 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,391 DEBUG Processing 466/825 atomic regions from SNP 139590 to 140190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,413 DEBUG Processing 223/724 atomic regions from SNP 66749 to 67349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,533 DEBUG Processing 179/708 atomic regions from SNP 53578 to 54179 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,541 DEBUG Processing 123/686 atomic regions from SNP 36673 to 37273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,655 DEBUG Processing 224/724 atomic regions from SNP 67049 to 67649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,660 DEBUG Processing 467/825 atomic regions from SNP 139890 to 140490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,770 DEBUG Processing 180/708 atomic regions from SNP 53879 to 54480 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:05,784 DEBUG Processing 124/686 atomic regions from SNP 36973 to 37573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:05,901 DEBUG Processing 225/724 atomic regions from SNP 67349 to 67949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:05,930 DEBUG Processing 468/825 atomic regions from SNP 140190 to 140790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,007 DEBUG Processing 125/686 atomic regions from SNP 37273 to 37873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,007 DEBUG Processing 181/708 atomic regions from SNP 54180 to 54781 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,147 DEBUG Processing 226/724 atomic regions from SNP 67649 to 68249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,195 DEBUG Processing 469/825 atomic regions from SNP 140490 to 141090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,225 DEBUG Processing 126/686 atomic regions from SNP 37573 to 38173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,232 DEBUG Processing 182/708 atomic regions from SNP 54481 to 55082 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,377 DEBUG Processing 227/724 atomic regions from SNP 67949 to 68549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,449 DEBUG Processing 127/686 atomic regions from SNP 37873 to 38473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,463 DEBUG Processing 183/708 atomic regions from SNP 54782 to 55383 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,465 DEBUG Processing 470/825 atomic regions from SNP 140790 to 141390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,603 DEBUG Processing 228/724 atomic regions from SNP 68249 to 68849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,680 DEBUG Processing 128/686 atomic regions from SNP 38173 to 38773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,703 DEBUG Processing 184/708 atomic regions from SNP 55083 to 55684 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:06,750 DEBUG Processing 471/825 atomic regions from SNP 141090 to 141690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,818 DEBUG Processing 229/724 atomic regions from SNP 68549 to 69149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:06,908 DEBUG Processing 129/686 atomic regions from SNP 38473 to 39073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:06,937 DEBUG Processing 185/708 atomic regions from SNP 55384 to 55985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,035 DEBUG Processing 230/724 atomic regions from SNP 68849 to 69449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,043 DEBUG Processing 472/825 atomic regions from SNP 141390 to 141990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,132 DEBUG Processing 130/686 atomic regions from SNP 38773 to 39373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,161 DEBUG Processing 186/708 atomic regions from SNP 55685 to 56286 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,267 DEBUG Processing 231/724 atomic regions from SNP 69149 to 69749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,310 DEBUG Processing 473/825 atomic regions from SNP 141690 to 142290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,359 DEBUG Processing 131/686 atomic regions from SNP 39073 to 39673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,394 DEBUG Processing 187/708 atomic regions from SNP 55986 to 56587 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,516 DEBUG Processing 232/724 atomic regions from SNP 69449 to 70049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,580 DEBUG Processing 132/686 atomic regions from SNP 39373 to 39973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,583 DEBUG Processing 474/825 atomic regions from SNP 141990 to 142590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,621 DEBUG Processing 188/708 atomic regions from SNP 56287 to 56888 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,742 DEBUG Processing 233/724 atomic regions from SNP 69749 to 70349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:07,805 DEBUG Processing 133/686 atomic regions from SNP 39673 to 40273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:07,846 DEBUG Processing 475/825 atomic regions from SNP 142290 to 142890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,849 DEBUG Processing 189/708 atomic regions from SNP 56588 to 57189 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:07,965 DEBUG Processing 234/724 atomic regions from SNP 70049 to 70649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,043 DEBUG Processing 134/686 atomic regions from SNP 39973 to 40573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,084 DEBUG Processing 190/708 atomic regions from SNP 56889 to 57490 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,121 DEBUG Processing 476/825 atomic regions from SNP 142590 to 143190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,178 DEBUG Processing 235/724 atomic regions from SNP 70349 to 70949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,277 DEBUG Processing 135/686 atomic regions from SNP 40273 to 40873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,329 DEBUG Processing 191/708 atomic regions from SNP 57190 to 57791 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,393 DEBUG Processing 236/724 atomic regions from SNP 70649 to 71249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,402 DEBUG Processing 477/825 atomic regions from SNP 142890 to 143490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,509 DEBUG Processing 136/686 atomic regions from SNP 40573 to 41173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,562 DEBUG Processing 192/708 atomic regions from SNP 57491 to 58092 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,619 DEBUG Processing 237/724 atomic regions from SNP 70949 to 71549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,692 DEBUG Processing 478/825 atomic regions from SNP 143190 to 143790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,723 DEBUG Processing 137/686 atomic regions from SNP 40873 to 41473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,788 DEBUG Processing 193/708 atomic regions from SNP 57792 to 58393 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:08,845 DEBUG Processing 238/724 atomic regions from SNP 71249 to 71849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:08,942 DEBUG Processing 138/686 atomic regions from SNP 41173 to 41773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:08,975 DEBUG Processing 479/825 atomic regions from SNP 143490 to 144090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,022 DEBUG Processing 194/708 atomic regions from SNP 58093 to 58694 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,065 DEBUG Processing 239/724 atomic regions from SNP 71549 to 72149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,166 DEBUG Processing 139/686 atomic regions from SNP 41473 to 42073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,223 DEBUG Processing 480/825 atomic regions from SNP 143790 to 144390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,252 DEBUG Processing 195/708 atomic regions from SNP 58394 to 58995 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,284 DEBUG Processing 240/724 atomic regions from SNP 71849 to 72449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,391 DEBUG Processing 140/686 atomic regions from SNP 41773 to 42373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,476 DEBUG Processing 196/708 atomic regions from SNP 58695 to 59296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,478 DEBUG Processing 481/825 atomic regions from SNP 144090 to 144690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,503 DEBUG Processing 241/724 atomic regions from SNP 72149 to 72749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,607 DEBUG Processing 141/686 atomic regions from SNP 42073 to 42673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,709 DEBUG Processing 197/708 atomic regions from SNP 58996 to 59597 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,732 DEBUG Processing 242/724 atomic regions from SNP 72449 to 73049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:09,743 DEBUG Processing 482/825 atomic regions from SNP 144390 to 144990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,822 DEBUG Processing 142/686 atomic regions from SNP 42373 to 42973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:09,947 DEBUG Processing 198/708 atomic regions from SNP 59297 to 59898 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:09,963 DEBUG Processing 243/724 atomic regions from SNP 72749 to 73349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,007 DEBUG Processing 483/825 atomic regions from SNP 144690 to 145290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,048 DEBUG Processing 143/686 atomic regions from SNP 42673 to 43273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,186 DEBUG Processing 244/724 atomic regions from SNP 73049 to 73649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,188 DEBUG Processing 199/708 atomic regions from SNP 59598 to 60199 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,283 DEBUG Processing 144/686 atomic regions from SNP 42973 to 43573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,286 DEBUG Processing 484/825 atomic regions from SNP 144990 to 145590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,405 DEBUG Processing 245/724 atomic regions from SNP 73349 to 73949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,433 DEBUG Processing 200/708 atomic regions from SNP 59899 to 60500 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,545 DEBUG Processing 145/686 atomic regions from SNP 43273 to 43873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,607 DEBUG Processing 485/825 atomic regions from SNP 145290 to 145890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,678 DEBUG Processing 246/724 atomic regions from SNP 73649 to 74249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:10,739 DEBUG Processing 201/708 atomic regions from SNP 60200 to 60801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:10,809 DEBUG Processing 146/686 atomic regions from SNP 43573 to 44173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:10,929 DEBUG Processing 486/825 atomic regions from SNP 145590 to 146190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,002 DEBUG Processing 247/724 atomic regions from SNP 73949 to 74549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,097 DEBUG Processing 202/708 atomic regions from SNP 60501 to 61102 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,132 DEBUG Processing 147/686 atomic regions from SNP 43873 to 44473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,277 DEBUG Processing 487/825 atomic regions from SNP 145890 to 146490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,344 DEBUG Processing 248/724 atomic regions from SNP 74249 to 74849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,460 DEBUG Processing 203/708 atomic regions from SNP 60802 to 61403 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,484 DEBUG Processing 148/686 atomic regions from SNP 44173 to 44773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,667 DEBUG Processing 488/825 atomic regions from SNP 146190 to 146790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,678 DEBUG Processing 249/724 atomic regions from SNP 74549 to 75149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:11,765 DEBUG Processing 149/686 atomic regions from SNP 44473 to 45073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:11,766 DEBUG Processing 204/708 atomic regions from SNP 61103 to 61704 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:11,978 DEBUG Processing 250/724 atomic regions from SNP 74849 to 75449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,028 DEBUG Processing 489/825 atomic regions from SNP 146490 to 147090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,118 DEBUG Processing 150/686 atomic regions from SNP 44773 to 45373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,126 DEBUG Processing 205/708 atomic regions from SNP 61404 to 62005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,268 DEBUG Processing 251/724 atomic regions from SNP 75149 to 75749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,380 DEBUG Processing 490/825 atomic regions from SNP 146790 to 147390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,475 DEBUG Processing 151/686 atomic regions from SNP 45073 to 45673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,496 DEBUG Processing 206/708 atomic regions from SNP 61705 to 62306 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,626 DEBUG Processing 252/724 atomic regions from SNP 75449 to 76049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,670 DEBUG Processing 491/825 atomic regions from SNP 147090 to 147690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,706 DEBUG Processing 152/686 atomic regions from SNP 45373 to 45973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,752 DEBUG Processing 207/708 atomic regions from SNP 62006 to 62607 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:12,854 DEBUG Processing 253/724 atomic regions from SNP 75749 to 76349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:12,936 DEBUG Processing 153/686 atomic regions from SNP 45673 to 46273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:12,955 DEBUG Processing 492/825 atomic regions from SNP 147390 to 147990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,987 DEBUG Processing 208/708 atomic regions from SNP 62307 to 62908 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,067 DEBUG Processing 254/724 atomic regions from SNP 76049 to 76649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,196 DEBUG Processing 154/686 atomic regions from SNP 45973 to 46573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,302 DEBUG Processing 493/825 atomic regions from SNP 147690 to 148290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,304 DEBUG Processing 209/708 atomic regions from SNP 62608 to 63209 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,367 DEBUG Processing 255/724 atomic regions from SNP 76349 to 76949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,470 DEBUG Processing 155/686 atomic regions from SNP 46273 to 46873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,650 DEBUG Processing 210/708 atomic regions from SNP 62909 to 63510 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,657 DEBUG Processing 494/825 atomic regions from SNP 147990 to 148590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,706 DEBUG Processing 256/724 atomic regions from SNP 76649 to 77249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:13,779 DEBUG Processing 156/686 atomic regions from SNP 46573 to 47173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:13,978 DEBUG Processing 211/708 atomic regions from SNP 63210 to 63811 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:13,998 DEBUG Processing 257/724 atomic regions from SNP 76949 to 77549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,000 DEBUG Processing 495/825 atomic regions from SNP 148290 to 148890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,034 DEBUG Processing 157/686 atomic regions from SNP 46873 to 47473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,209 DEBUG Processing 212/708 atomic regions from SNP 63511 to 64112 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,236 DEBUG Processing 258/724 atomic regions from SNP 77249 to 77849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,278 DEBUG Processing 158/686 atomic regions from SNP 47173 to 47773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,278 DEBUG Processing 496/825 atomic regions from SNP 148590 to 149190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,487 DEBUG Processing 213/708 atomic regions from SNP 63812 to 64413 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,495 DEBUG Processing 259/724 atomic regions from SNP 77549 to 78149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,554 DEBUG Processing 159/686 atomic regions from SNP 47473 to 48073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,574 DEBUG Processing 497/825 atomic regions from SNP 148890 to 149490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,719 DEBUG Processing 214/708 atomic regions from SNP 64113 to 64714 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:14,721 DEBUG Processing 260/724 atomic regions from SNP 77849 to 78449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,783 DEBUG Processing 160/686 atomic regions from SNP 47773 to 48373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:14,852 DEBUG Processing 498/825 atomic regions from SNP 149190 to 149790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,944 DEBUG Processing 261/724 atomic regions from SNP 78149 to 78749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:14,957 DEBUG Processing 215/708 atomic regions from SNP 64414 to 65015 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,007 DEBUG Processing 161/686 atomic regions from SNP 48073 to 48673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,117 DEBUG Processing 499/825 atomic regions from SNP 149490 to 150090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,212 DEBUG Processing 262/724 atomic regions from SNP 78449 to 79049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,225 DEBUG Processing 216/708 atomic regions from SNP 64715 to 65316 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,252 DEBUG Processing 162/686 atomic regions from SNP 48373 to 48973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,382 DEBUG Processing 500/825 atomic regions from SNP 149790 to 150390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,484 DEBUG Processing 263/724 atomic regions from SNP 78749 to 79349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,521 DEBUG Processing 217/708 atomic regions from SNP 65016 to 65617 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,542 DEBUG Processing 163/686 atomic regions from SNP 48673 to 49273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,698 DEBUG Processing 501/825 atomic regions from SNP 150090 to 150690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,785 DEBUG Processing 264/724 atomic regions from SNP 79049 to 79649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:15,833 DEBUG Processing 218/708 atomic regions from SNP 65317 to 65918 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:15,845 DEBUG Processing 164/686 atomic regions from SNP 48973 to 49573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:15,963 DEBUG Processing 502/825 atomic regions from SNP 150390 to 150990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,009 DEBUG Processing 265/724 atomic regions from SNP 79349 to 79949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,078 DEBUG Processing 165/686 atomic regions from SNP 49273 to 49873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,092 DEBUG Processing 219/708 atomic regions from SNP 65618 to 66219 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,269 DEBUG Processing 266/724 atomic regions from SNP 79649 to 80249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,272 DEBUG Processing 503/825 atomic regions from SNP 150690 to 151290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,310 DEBUG Processing 166/686 atomic regions from SNP 49573 to 50173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,343 DEBUG Processing 220/708 atomic regions from SNP 65919 to 66520 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,496 DEBUG Processing 267/724 atomic regions from SNP 79949 to 80549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,533 DEBUG Processing 504/825 atomic regions from SNP 150990 to 151590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,540 DEBUG Processing 167/686 atomic regions from SNP 49873 to 50473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,588 DEBUG Processing 221/708 atomic regions from SNP 66220 to 66821 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,706 DEBUG Processing 268/724 atomic regions from SNP 80249 to 80849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,759 DEBUG Processing 168/686 atomic regions from SNP 50173 to 50773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:16,779 DEBUG Processing 505/825 atomic regions from SNP 151290 to 151890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,817 DEBUG Processing 222/708 atomic regions from SNP 66521 to 67122 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:16,919 DEBUG Processing 269/724 atomic regions from SNP 80549 to 81149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:16,975 DEBUG Processing 169/686 atomic regions from SNP 50473 to 51073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,036 DEBUG Processing 506/825 atomic regions from SNP 151590 to 152190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,052 DEBUG Processing 223/708 atomic regions from SNP 66822 to 67423 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,136 DEBUG Processing 270/724 atomic regions from SNP 80849 to 81449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,195 DEBUG Processing 170/686 atomic regions from SNP 50773 to 51373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,293 DEBUG Processing 224/708 atomic regions from SNP 67123 to 67724 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,300 DEBUG Processing 507/825 atomic regions from SNP 151890 to 152490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,360 DEBUG Processing 271/724 atomic regions from SNP 81149 to 81749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,440 DEBUG Processing 171/686 atomic regions from SNP 51073 to 51673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,523 DEBUG Processing 225/708 atomic regions from SNP 67424 to 68025 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,557 DEBUG Processing 508/825 atomic regions from SNP 152190 to 152790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,591 DEBUG Processing 272/724 atomic regions from SNP 81449 to 82049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,665 DEBUG Processing 172/686 atomic regions from SNP 51373 to 51973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,746 DEBUG Processing 226/708 atomic regions from SNP 67725 to 68326 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:17,803 DEBUG Processing 509/825 atomic regions from SNP 152490 to 153090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,814 DEBUG Processing 273/724 atomic regions from SNP 81749 to 82349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:17,887 DEBUG Processing 173/686 atomic regions from SNP 51673 to 52273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:17,967 DEBUG Processing 227/708 atomic regions from SNP 68026 to 68627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,035 DEBUG Processing 274/724 atomic regions from SNP 82049 to 82649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,043 DEBUG Processing 510/825 atomic regions from SNP 152790 to 153390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,104 DEBUG Processing 174/686 atomic regions from SNP 51973 to 52573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,197 DEBUG Processing 228/708 atomic regions from SNP 68327 to 68928 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,265 DEBUG Processing 275/724 atomic regions from SNP 82349 to 82949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,296 DEBUG Processing 511/825 atomic regions from SNP 153090 to 153690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,329 DEBUG Processing 175/686 atomic regions from SNP 52273 to 52873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,427 DEBUG Processing 229/708 atomic regions from SNP 68628 to 69229 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,494 DEBUG Processing 276/724 atomic regions from SNP 82649 to 83249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,548 DEBUG Processing 512/825 atomic regions from SNP 153390 to 153990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,558 DEBUG Processing 176/686 atomic regions from SNP 52573 to 53173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,643 DEBUG Processing 230/708 atomic regions from SNP 68929 to 69530 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,718 DEBUG Processing 277/724 atomic regions from SNP 82949 to 83549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,779 DEBUG Processing 177/686 atomic regions from SNP 52873 to 53473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:18,786 DEBUG Processing 513/825 atomic regions from SNP 153690 to 154290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,864 DEBUG Processing 231/708 atomic regions from SNP 69230 to 69831 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:18,938 DEBUG Processing 278/724 atomic regions from SNP 83249 to 83849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:18,995 DEBUG Processing 178/686 atomic regions from SNP 53173 to 53773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,037 DEBUG Processing 514/825 atomic regions from SNP 153990 to 154590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,085 DEBUG Processing 232/708 atomic regions from SNP 69531 to 70132 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,156 DEBUG Processing 279/724 atomic regions from SNP 83549 to 84149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,216 DEBUG Processing 179/686 atomic regions from SNP 53473 to 54073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,279 DEBUG Processing 515/825 atomic regions from SNP 154290 to 154890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,303 DEBUG Processing 233/708 atomic regions from SNP 69832 to 70433 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,371 DEBUG Processing 280/724 atomic regions from SNP 83849 to 84449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,436 DEBUG Processing 180/686 atomic regions from SNP 53773 to 54373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,517 DEBUG Processing 516/825 atomic regions from SNP 154590 to 155190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,533 DEBUG Processing 234/708 atomic regions from SNP 70133 to 70734 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,589 DEBUG Processing 281/724 atomic regions from SNP 84149 to 84749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,656 DEBUG Processing 181/686 atomic regions from SNP 54073 to 54673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,752 DEBUG Processing 517/825 atomic regions from SNP 154890 to 155490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,758 DEBUG Processing 235/708 atomic regions from SNP 70434 to 71035 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,809 DEBUG Processing 282/724 atomic regions from SNP 84449 to 85049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:19,872 DEBUG Processing 182/686 atomic regions from SNP 54373 to 54973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:19,987 DEBUG Processing 236/708 atomic regions from SNP 70735 to 71336 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:19,988 DEBUG Processing 518/825 atomic regions from SNP 155190 to 155790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,025 DEBUG Processing 283/724 atomic regions from SNP 84749 to 85349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,093 DEBUG Processing 183/686 atomic regions from SNP 54673 to 55273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,207 DEBUG Processing 237/708 atomic regions from SNP 71036 to 71637 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,225 DEBUG Processing 519/825 atomic regions from SNP 155490 to 156090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,242 DEBUG Processing 284/724 atomic regions from SNP 85049 to 85649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,312 DEBUG Processing 184/686 atomic regions from SNP 54973 to 55573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,430 DEBUG Processing 238/708 atomic regions from SNP 71337 to 71938 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,472 DEBUG Processing 285/724 atomic regions from SNP 85349 to 85949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,475 DEBUG Processing 520/825 atomic regions from SNP 155790 to 156390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,538 DEBUG Processing 185/686 atomic regions from SNP 55273 to 55873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,648 DEBUG Processing 239/708 atomic regions from SNP 71638 to 72239 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,694 DEBUG Processing 286/724 atomic regions from SNP 85649 to 86249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,711 DEBUG Processing 521/825 atomic regions from SNP 156090 to 156690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,755 DEBUG Processing 186/686 atomic regions from SNP 55573 to 56173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:20,864 DEBUG Processing 240/708 atomic regions from SNP 71939 to 72540 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:20,912 DEBUG Processing 287/724 atomic regions from SNP 85949 to 86549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:20,947 DEBUG Processing 522/825 atomic regions from SNP 156390 to 156990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,980 DEBUG Processing 187/686 atomic regions from SNP 55873 to 56473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,080 DEBUG Processing 241/708 atomic regions from SNP 72240 to 72841 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,126 DEBUG Processing 288/724 atomic regions from SNP 86249 to 86849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,185 DEBUG Processing 523/825 atomic regions from SNP 156690 to 157290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,197 DEBUG Processing 188/686 atomic regions from SNP 56173 to 56773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,309 DEBUG Processing 242/708 atomic regions from SNP 72541 to 73142 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,344 DEBUG Processing 289/724 atomic regions from SNP 86549 to 87149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,410 DEBUG Processing 189/686 atomic regions from SNP 56473 to 57073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,417 DEBUG Processing 524/825 atomic regions from SNP 156990 to 157590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,530 DEBUG Processing 243/708 atomic regions from SNP 72842 to 73443 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,567 DEBUG Processing 290/724 atomic regions from SNP 86849 to 87449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,630 DEBUG Processing 190/686 atomic regions from SNP 56773 to 57373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,650 DEBUG Processing 525/825 atomic regions from SNP 157290 to 157890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,751 DEBUG Processing 244/708 atomic regions from SNP 73143 to 73744 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:21,799 DEBUG Processing 291/724 atomic regions from SNP 87149 to 87749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:21,866 DEBUG Processing 191/686 atomic regions from SNP 57073 to 57673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:21,900 DEBUG Processing 526/825 atomic regions from SNP 157590 to 158190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,969 DEBUG Processing 245/708 atomic regions from SNP 73444 to 74045 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,025 DEBUG Processing 292/724 atomic regions from SNP 87449 to 88049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,099 DEBUG Processing 192/686 atomic regions from SNP 57373 to 57973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,153 DEBUG Processing 527/825 atomic regions from SNP 157890 to 158490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,195 DEBUG Processing 246/708 atomic regions from SNP 73745 to 74346 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,250 DEBUG Processing 293/724 atomic regions from SNP 87749 to 88349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,324 DEBUG Processing 193/686 atomic regions from SNP 57673 to 58273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,397 DEBUG Processing 528/825 atomic regions from SNP 158190 to 158790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,422 DEBUG Processing 247/708 atomic regions from SNP 74046 to 74647 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,464 DEBUG Processing 294/724 atomic regions from SNP 88049 to 88649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,546 DEBUG Processing 194/686 atomic regions from SNP 57973 to 58573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,651 DEBUG Processing 248/708 atomic regions from SNP 74347 to 74948 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,668 DEBUG Processing 529/825 atomic regions from SNP 158490 to 159090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,681 DEBUG Processing 295/724 atomic regions from SNP 88349 to 88949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,815 DEBUG Processing 195/686 atomic regions from SNP 58273 to 58873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:22,949 DEBUG Processing 249/708 atomic regions from SNP 74648 to 75249 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:22,955 DEBUG Processing 296/724 atomic regions from SNP 88649 to 89249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:22,975 DEBUG Processing 530/825 atomic regions from SNP 158790 to 159390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,106 DEBUG Processing 196/686 atomic regions from SNP 58573 to 59173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,190 DEBUG Processing 297/724 atomic regions from SNP 88949 to 89549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,197 DEBUG Processing 250/708 atomic regions from SNP 74949 to 75550 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,233 DEBUG Processing 531/825 atomic regions from SNP 159090 to 159690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,335 DEBUG Processing 197/686 atomic regions from SNP 58873 to 59473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,412 DEBUG Processing 298/724 atomic regions from SNP 89249 to 89849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,423 DEBUG Processing 251/708 atomic regions from SNP 75250 to 75851 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,483 DEBUG Processing 532/825 atomic regions from SNP 159390 to 159990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,558 DEBUG Processing 198/686 atomic regions from SNP 59173 to 59773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,632 DEBUG Processing 299/724 atomic regions from SNP 89549 to 90149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,652 DEBUG Processing 252/708 atomic regions from SNP 75551 to 76152 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,731 DEBUG Processing 533/825 atomic regions from SNP 159690 to 160290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,784 DEBUG Processing 199/686 atomic regions from SNP 59473 to 60073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:23,856 DEBUG Processing 300/724 atomic regions from SNP 89849 to 90449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:23,889 DEBUG Processing 253/708 atomic regions from SNP 75852 to 76453 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:23,981 DEBUG Processing 534/825 atomic regions from SNP 159990 to 160590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,003 DEBUG Processing 200/686 atomic regions from SNP 59773 to 60373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,076 DEBUG Processing 301/724 atomic regions from SNP 90149 to 90749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,125 DEBUG Processing 254/708 atomic regions from SNP 76153 to 76754 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,228 DEBUG Processing 201/686 atomic regions from SNP 60073 to 60673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,233 DEBUG Processing 535/825 atomic regions from SNP 160290 to 160890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,290 DEBUG Processing 302/724 atomic regions from SNP 90449 to 91049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,343 DEBUG Processing 255/708 atomic regions from SNP 76454 to 77055 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,462 DEBUG Processing 202/686 atomic regions from SNP 60373 to 60973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,484 DEBUG Processing 536/825 atomic regions from SNP 160590 to 161190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,514 DEBUG Processing 303/724 atomic regions from SNP 90749 to 91349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,575 DEBUG Processing 256/708 atomic regions from SNP 76755 to 77356 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,689 DEBUG Processing 203/686 atomic regions from SNP 60673 to 61273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,728 DEBUG Processing 537/825 atomic regions from SNP 160890 to 161490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,745 DEBUG Processing 304/724 atomic regions from SNP 91049 to 91649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,803 DEBUG Processing 257/708 atomic regions from SNP 77056 to 77657 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:24,914 DEBUG Processing 204/686 atomic regions from SNP 60973 to 61573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:24,971 DEBUG Processing 305/724 atomic regions from SNP 91349 to 91949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:24,974 DEBUG Processing 538/825 atomic regions from SNP 161190 to 161790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,036 DEBUG Processing 258/708 atomic regions from SNP 77357 to 77958 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,139 DEBUG Processing 205/686 atomic regions from SNP 61273 to 61873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,200 DEBUG Processing 306/724 atomic regions from SNP 91649 to 92249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,216 DEBUG Processing 539/825 atomic regions from SNP 161490 to 162090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,270 DEBUG Processing 259/708 atomic regions from SNP 77658 to 78259 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,385 DEBUG Processing 206/686 atomic regions from SNP 61573 to 62173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,443 DEBUG Processing 307/724 atomic regions from SNP 91949 to 92549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,470 DEBUG Processing 540/825 atomic regions from SNP 161790 to 162390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,510 DEBUG Processing 260/708 atomic regions from SNP 77959 to 78560 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,619 DEBUG Processing 207/686 atomic regions from SNP 61873 to 62473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,676 DEBUG Processing 308/724 atomic regions from SNP 92249 to 92849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,711 DEBUG Processing 541/825 atomic regions from SNP 162090 to 162690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,742 DEBUG Processing 261/708 atomic regions from SNP 78260 to 78861 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:25,844 DEBUG Processing 208/686 atomic regions from SNP 62173 to 62773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:25,927 DEBUG Processing 309/724 atomic regions from SNP 92549 to 93149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:25,958 DEBUG Processing 542/825 atomic regions from SNP 162390 to 162990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,975 DEBUG Processing 262/708 atomic regions from SNP 78561 to 79162 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,118 DEBUG Processing 209/686 atomic regions from SNP 62473 to 63073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,166 DEBUG Processing 310/724 atomic regions from SNP 92849 to 93449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,213 DEBUG Processing 543/825 atomic regions from SNP 162690 to 163290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,213 DEBUG Processing 263/708 atomic regions from SNP 78862 to 79463 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,362 DEBUG Processing 210/686 atomic regions from SNP 62773 to 63373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,403 DEBUG Processing 311/724 atomic regions from SNP 93149 to 93749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,449 DEBUG Processing 264/708 atomic regions from SNP 79163 to 79764 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,471 DEBUG Processing 544/825 atomic regions from SNP 162990 to 163590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,600 DEBUG Processing 211/686 atomic regions from SNP 63073 to 63673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,640 DEBUG Processing 312/724 atomic regions from SNP 93449 to 94049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,688 DEBUG Processing 265/708 atomic regions from SNP 79464 to 80065 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,724 DEBUG Processing 545/825 atomic regions from SNP 163290 to 163890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,836 DEBUG Processing 212/686 atomic regions from SNP 63373 to 63973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:26,880 DEBUG Processing 313/724 atomic regions from SNP 93749 to 94349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:26,922 DEBUG Processing 266/708 atomic regions from SNP 79765 to 80366 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:26,976 DEBUG Processing 546/825 atomic regions from SNP 163590 to 164190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,072 DEBUG Processing 213/686 atomic regions from SNP 63673 to 64273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,124 DEBUG Processing 314/724 atomic regions from SNP 94049 to 94649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,208 DEBUG Processing 267/708 atomic regions from SNP 80066 to 80667 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,281 DEBUG Processing 547/825 atomic regions from SNP 163890 to 164490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,360 DEBUG Processing 214/686 atomic regions from SNP 63973 to 64573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,391 DEBUG Processing 315/724 atomic regions from SNP 94349 to 94949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,527 DEBUG Processing 268/708 atomic regions from SNP 80367 to 80968 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,638 DEBUG Processing 548/825 atomic regions from SNP 164190 to 164790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,692 DEBUG Processing 215/686 atomic regions from SNP 64273 to 64873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:27,718 DEBUG Processing 316/724 atomic regions from SNP 94649 to 95249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:27,853 DEBUG Processing 269/708 atomic regions from SNP 80668 to 81269 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:27,972 DEBUG Processing 549/825 atomic regions from SNP 164490 to 165090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,020 DEBUG Processing 216/686 atomic regions from SNP 64573 to 65173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,064 DEBUG Processing 317/724 atomic regions from SNP 94949 to 95549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,207 DEBUG Processing 270/708 atomic regions from SNP 80969 to 81570 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,297 DEBUG Processing 550/825 atomic regions from SNP 164790 to 165390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,315 DEBUG Processing 217/686 atomic regions from SNP 64873 to 65473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,375 DEBUG Processing 318/724 atomic regions from SNP 95249 to 95849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,545 DEBUG Processing 271/708 atomic regions from SNP 81270 to 81871 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,665 DEBUG Processing 551/825 atomic regions from SNP 165090 to 165690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,670 DEBUG Processing 218/686 atomic regions from SNP 65173 to 65773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,707 DEBUG Processing 319/724 atomic regions from SNP 95549 to 96149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:28,775 DEBUG Processing 272/708 atomic regions from SNP 81571 to 82172 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:28,922 DEBUG Processing 219/686 atomic regions from SNP 65473 to 66073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:28,929 DEBUG Processing 552/825 atomic regions from SNP 165390 to 165990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,972 DEBUG Processing 320/724 atomic regions from SNP 95849 to 96449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,005 DEBUG Processing 273/708 atomic regions from SNP 81872 to 82473 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,156 DEBUG Processing 220/686 atomic regions from SNP 65773 to 66373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,178 DEBUG Processing 553/825 atomic regions from SNP 165690 to 166290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,225 DEBUG Processing 321/724 atomic regions from SNP 96149 to 96749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,240 DEBUG Processing 274/708 atomic regions from SNP 82173 to 82774 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,389 DEBUG Processing 221/686 atomic regions from SNP 66073 to 66673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,425 DEBUG Processing 554/825 atomic regions from SNP 165990 to 166590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,452 DEBUG Processing 322/724 atomic regions from SNP 96449 to 97049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,471 DEBUG Processing 275/708 atomic regions from SNP 82474 to 83075 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,627 DEBUG Processing 222/686 atomic regions from SNP 66373 to 66973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,676 DEBUG Processing 555/825 atomic regions from SNP 166290 to 166890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,678 DEBUG Processing 323/724 atomic regions from SNP 96749 to 97349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,705 DEBUG Processing 276/708 atomic regions from SNP 82775 to 83376 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:29,865 DEBUG Processing 223/686 atomic regions from SNP 66673 to 67273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:29,910 DEBUG Processing 324/724 atomic regions from SNP 97049 to 97649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:29,925 DEBUG Processing 556/825 atomic regions from SNP 166590 to 167190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,938 DEBUG Processing 277/708 atomic regions from SNP 83076 to 83677 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,102 DEBUG Processing 224/686 atomic regions from SNP 66973 to 67573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,151 DEBUG Processing 325/724 atomic regions from SNP 97349 to 97949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,176 DEBUG Processing 557/825 atomic regions from SNP 166890 to 167490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,184 DEBUG Processing 278/708 atomic regions from SNP 83377 to 83978 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,330 DEBUG Processing 225/686 atomic regions from SNP 67273 to 67873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,383 DEBUG Processing 326/724 atomic regions from SNP 97649 to 98249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,410 DEBUG Processing 279/708 atomic regions from SNP 83678 to 84279 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,417 DEBUG Processing 558/825 atomic regions from SNP 167190 to 167790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,559 DEBUG Processing 226/686 atomic regions from SNP 67573 to 68173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,610 DEBUG Processing 327/724 atomic regions from SNP 97949 to 98549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,632 DEBUG Processing 280/708 atomic regions from SNP 83979 to 84580 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,657 DEBUG Processing 559/825 atomic regions from SNP 167490 to 168090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,797 DEBUG Processing 227/686 atomic regions from SNP 67873 to 68473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:30,863 DEBUG Processing 281/708 atomic regions from SNP 84280 to 84881 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:30,865 DEBUG Processing 328/724 atomic regions from SNP 98249 to 98849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:30,900 DEBUG Processing 560/825 atomic regions from SNP 167790 to 168390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,039 DEBUG Processing 228/686 atomic regions from SNP 68173 to 68773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,105 DEBUG Processing 282/708 atomic regions from SNP 84581 to 85182 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,116 DEBUG Processing 329/724 atomic regions from SNP 98549 to 99149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,152 DEBUG Processing 561/825 atomic regions from SNP 168090 to 168690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,282 DEBUG Processing 229/686 atomic regions from SNP 68473 to 69073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,342 DEBUG Processing 283/708 atomic regions from SNP 84882 to 85483 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,369 DEBUG Processing 330/724 atomic regions from SNP 98849 to 99449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,408 DEBUG Processing 562/825 atomic regions from SNP 168390 to 168990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,516 DEBUG Processing 230/686 atomic regions from SNP 68773 to 69373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,571 DEBUG Processing 284/708 atomic regions from SNP 85183 to 85784 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,598 DEBUG Processing 331/724 atomic regions from SNP 99149 to 99749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,663 DEBUG Processing 563/825 atomic regions from SNP 168690 to 169290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,750 DEBUG Processing 231/686 atomic regions from SNP 69073 to 69673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:31,802 DEBUG Processing 285/708 atomic regions from SNP 85484 to 86085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:31,830 DEBUG Processing 332/724 atomic regions from SNP 99449 to 100049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:31,907 DEBUG Processing 564/825 atomic regions from SNP 168990 to 169590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,978 DEBUG Processing 232/686 atomic regions from SNP 69373 to 69973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,025 DEBUG Processing 286/708 atomic regions from SNP 85785 to 86385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,081 DEBUG Processing 333/724 atomic regions from SNP 99749 to 100349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,146 DEBUG Processing 565/825 atomic regions from SNP 169290 to 169890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,222 DEBUG Processing 233/686 atomic regions from SNP 69673 to 70273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,246 DEBUG Processing 287/708 atomic regions from SNP 86085 to 86685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,341 DEBUG Processing 334/724 atomic regions from SNP 100049 to 100649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,385 DEBUG Processing 566/825 atomic regions from SNP 169590 to 170190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,465 DEBUG Processing 288/708 atomic regions from SNP 86385 to 86985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,476 DEBUG Processing 234/686 atomic regions from SNP 69973 to 70573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,593 DEBUG Processing 335/724 atomic regions from SNP 100349 to 100949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,619 DEBUG Processing 567/825 atomic regions from SNP 169890 to 170490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,696 DEBUG Processing 289/708 atomic regions from SNP 86685 to 87285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,713 DEBUG Processing 235/686 atomic regions from SNP 70273 to 70873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:32,836 DEBUG Processing 336/724 atomic regions from SNP 100649 to 101249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:32,852 DEBUG Processing 568/825 atomic regions from SNP 170190 to 170790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,915 DEBUG Processing 290/708 atomic regions from SNP 86985 to 87585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:32,944 DEBUG Processing 236/686 atomic regions from SNP 70573 to 71173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,084 DEBUG Processing 337/724 atomic regions from SNP 100949 to 101549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,087 DEBUG Processing 569/825 atomic regions from SNP 170490 to 171090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,130 DEBUG Processing 291/708 atomic regions from SNP 87285 to 87885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,171 DEBUG Processing 237/686 atomic regions from SNP 70873 to 71473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,325 DEBUG Processing 338/724 atomic regions from SNP 101249 to 101849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,328 DEBUG Processing 570/825 atomic regions from SNP 170790 to 171390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,368 DEBUG Processing 292/708 atomic regions from SNP 87585 to 88185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,398 DEBUG Processing 238/686 atomic regions from SNP 71173 to 71773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,562 DEBUG Processing 339/724 atomic regions from SNP 101549 to 102149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,573 DEBUG Processing 571/825 atomic regions from SNP 171090 to 171690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,597 DEBUG Processing 293/708 atomic regions from SNP 87885 to 88485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,630 DEBUG Processing 239/686 atomic regions from SNP 71473 to 72073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:33,823 DEBUG Processing 572/825 atomic regions from SNP 171390 to 171990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,823 DEBUG Processing 340/724 atomic regions from SNP 101849 to 102449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:33,840 DEBUG Processing 294/708 atomic regions from SNP 88185 to 88785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:33,872 DEBUG Processing 240/686 atomic regions from SNP 71773 to 72373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,069 DEBUG Processing 573/825 atomic regions from SNP 171690 to 172290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,071 DEBUG Processing 295/708 atomic regions from SNP 88485 to 89085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,077 DEBUG Processing 341/724 atomic regions from SNP 102149 to 102749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,109 DEBUG Processing 241/686 atomic regions from SNP 72073 to 72673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,291 DEBUG Processing 296/708 atomic regions from SNP 88785 to 89385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,305 DEBUG Processing 342/724 atomic regions from SNP 102449 to 103049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,307 DEBUG Processing 574/825 atomic regions from SNP 171990 to 172590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,338 DEBUG Processing 242/686 atomic regions from SNP 72373 to 72973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,524 DEBUG Processing 297/708 atomic regions from SNP 89085 to 89685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,531 DEBUG Processing 343/724 atomic regions from SNP 102749 to 103349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,558 DEBUG Processing 575/825 atomic regions from SNP 172290 to 172890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,572 DEBUG Processing 243/686 atomic regions from SNP 72673 to 73273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,751 DEBUG Processing 298/708 atomic regions from SNP 89385 to 89985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,760 DEBUG Processing 344/724 atomic regions from SNP 103049 to 103649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:34,803 DEBUG Processing 576/825 atomic regions from SNP 172590 to 173190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,805 DEBUG Processing 244/686 atomic regions from SNP 72973 to 73573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:34,981 DEBUG Processing 299/708 atomic regions from SNP 89685 to 90285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:34,994 DEBUG Processing 345/724 atomic regions from SNP 103349 to 103949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,039 DEBUG Processing 245/686 atomic regions from SNP 73273 to 73873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,045 DEBUG Processing 577/825 atomic regions from SNP 172890 to 173490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,194 DEBUG Processing 300/708 atomic regions from SNP 89985 to 90585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,219 DEBUG Processing 346/724 atomic regions from SNP 103649 to 104249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,268 DEBUG Processing 246/686 atomic regions from SNP 73573 to 74173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,279 DEBUG Processing 578/825 atomic regions from SNP 173190 to 173790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,419 DEBUG Processing 301/708 atomic regions from SNP 90285 to 90885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,443 DEBUG Processing 347/724 atomic regions from SNP 103949 to 104549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,493 DEBUG Processing 247/686 atomic regions from SNP 73873 to 74473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,519 DEBUG Processing 579/825 atomic regions from SNP 173490 to 174090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,644 DEBUG Processing 302/708 atomic regions from SNP 90585 to 91185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,671 DEBUG Processing 348/724 atomic regions from SNP 104249 to 104849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,718 DEBUG Processing 248/686 atomic regions from SNP 74173 to 74773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:35,763 DEBUG Processing 580/825 atomic regions from SNP 173790 to 174390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,858 DEBUG Processing 303/708 atomic regions from SNP 90885 to 91485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:35,895 DEBUG Processing 349/724 atomic regions from SNP 104549 to 105149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:35,945 DEBUG Processing 249/686 atomic regions from SNP 74473 to 75073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,005 DEBUG Processing 581/825 atomic regions from SNP 174090 to 174690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,086 DEBUG Processing 304/708 atomic regions from SNP 91185 to 91785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,129 DEBUG Processing 350/724 atomic regions from SNP 104849 to 105449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,177 DEBUG Processing 250/686 atomic regions from SNP 74773 to 75373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,248 DEBUG Processing 582/825 atomic regions from SNP 174390 to 174990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,308 DEBUG Processing 305/708 atomic regions from SNP 91485 to 92085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,361 DEBUG Processing 351/724 atomic regions from SNP 105149 to 105749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,415 DEBUG Processing 251/686 atomic regions from SNP 75073 to 75673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,493 DEBUG Processing 583/825 atomic regions from SNP 174690 to 175290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,534 DEBUG Processing 306/708 atomic regions from SNP 91785 to 92385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,583 DEBUG Processing 352/724 atomic regions from SNP 105449 to 106049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,651 DEBUG Processing 252/686 atomic regions from SNP 75373 to 75973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:36,749 DEBUG Processing 584/825 atomic regions from SNP 174990 to 175590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,764 DEBUG Processing 307/708 atomic regions from SNP 92085 to 92685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:36,801 DEBUG Processing 353/724 atomic regions from SNP 105749 to 106349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:36,887 DEBUG Processing 253/686 atomic regions from SNP 75673 to 76273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,020 DEBUG Processing 308/708 atomic regions from SNP 92385 to 92985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,021 DEBUG Processing 585/825 atomic regions from SNP 175290 to 175890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,033 DEBUG Processing 354/724 atomic regions from SNP 106049 to 106649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,107 DEBUG Processing 254/686 atomic regions from SNP 75973 to 76573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,317 DEBUG Processing 586/825 atomic regions from SNP 175590 to 176190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,329 DEBUG Processing 309/708 atomic regions from SNP 92685 to 93285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,330 DEBUG Processing 355/724 atomic regions from SNP 106349 to 106949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,389 DEBUG Processing 255/686 atomic regions from SNP 76273 to 76873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,556 DEBUG Processing 356/724 atomic regions from SNP 106649 to 107249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,562 DEBUG Processing 587/825 atomic regions from SNP 175890 to 176490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,578 DEBUG Processing 310/708 atomic regions from SNP 92985 to 93585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,628 DEBUG Processing 256/686 atomic regions from SNP 76573 to 77173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:37,781 DEBUG Processing 357/724 atomic regions from SNP 106949 to 107549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:37,807 DEBUG Processing 311/708 atomic regions from SNP 93285 to 93885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:37,809 DEBUG Processing 588/825 atomic regions from SNP 176190 to 176790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,859 DEBUG Processing 257/686 atomic regions from SNP 76873 to 77473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,014 DEBUG Processing 358/724 atomic regions from SNP 107249 to 107849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,039 DEBUG Processing 312/708 atomic regions from SNP 93585 to 94185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,058 DEBUG Processing 589/825 atomic regions from SNP 176490 to 177090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,088 DEBUG Processing 258/686 atomic regions from SNP 77173 to 77773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,261 DEBUG Processing 359/724 atomic regions from SNP 107549 to 108149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,287 DEBUG Processing 313/708 atomic regions from SNP 93885 to 94485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,344 DEBUG Processing 590/825 atomic regions from SNP 176790 to 177390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,362 DEBUG Processing 259/686 atomic regions from SNP 77473 to 78073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,542 DEBUG Processing 360/724 atomic regions from SNP 107849 to 108449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,555 DEBUG Processing 314/708 atomic regions from SNP 94185 to 94785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:38,673 DEBUG Processing 591/825 atomic regions from SNP 177090 to 177690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,700 DEBUG Processing 260/686 atomic regions from SNP 77773 to 78373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:38,842 DEBUG Processing 361/724 atomic regions from SNP 108149 to 108749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:38,863 DEBUG Processing 315/708 atomic regions from SNP 94485 to 95085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,016 DEBUG Processing 592/825 atomic regions from SNP 177390 to 177990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,062 DEBUG Processing 261/686 atomic regions from SNP 78073 to 78673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,180 DEBUG Processing 362/724 atomic regions from SNP 108449 to 109049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,183 DEBUG Processing 316/708 atomic regions from SNP 94785 to 95385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,281 DEBUG Processing 593/825 atomic regions from SNP 177690 to 178290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,302 DEBUG Processing 262/686 atomic regions from SNP 78373 to 78973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,423 DEBUG Processing 363/724 atomic regions from SNP 108749 to 109349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,429 DEBUG Processing 317/708 atomic regions from SNP 95085 to 95685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,547 DEBUG Processing 594/825 atomic regions from SNP 177990 to 178590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,554 DEBUG Processing 263/686 atomic regions from SNP 78673 to 79273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,676 DEBUG Processing 364/724 atomic regions from SNP 109049 to 109649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,696 DEBUG Processing 318/708 atomic regions from SNP 95385 to 95985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:39,851 DEBUG Processing 264/686 atomic regions from SNP 78973 to 79573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:39,852 DEBUG Processing 595/825 atomic regions from SNP 178290 to 178890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,950 DEBUG Processing 365/724 atomic regions from SNP 109349 to 109949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:39,959 DEBUG Processing 319/708 atomic regions from SNP 95685 to 96285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,183 DEBUG Processing 265/686 atomic regions from SNP 79273 to 79873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,188 DEBUG Processing 596/825 atomic regions from SNP 178590 to 179190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,221 DEBUG Processing 366/724 atomic regions from SNP 109649 to 110249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,226 DEBUG Processing 320/708 atomic regions from SNP 95985 to 96585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,543 DEBUG Processing 266/686 atomic regions from SNP 79573 to 80173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,552 DEBUG Processing 597/825 atomic regions from SNP 178890 to 179490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,578 DEBUG Processing 367/724 atomic regions from SNP 109949 to 110549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:40,584 DEBUG Processing 321/708 atomic regions from SNP 96285 to 96885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,787 DEBUG Processing 598/825 atomic regions from SNP 179190 to 179790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,796 DEBUG Processing 267/686 atomic regions from SNP 79873 to 80473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:40,825 DEBUG Processing 322/708 atomic regions from SNP 96585 to 97185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:40,833 DEBUG Processing 368/724 atomic regions from SNP 110249 to 110849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,024 DEBUG Processing 268/686 atomic regions from SNP 80173 to 80773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,026 DEBUG Processing 599/825 atomic regions from SNP 179490 to 180090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,044 DEBUG Processing 323/708 atomic regions from SNP 96885 to 97485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,061 DEBUG Processing 369/724 atomic regions from SNP 110549 to 111149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,257 DEBUG Processing 269/686 atomic regions from SNP 80473 to 81073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,269 DEBUG Processing 324/708 atomic regions from SNP 97185 to 97785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,273 DEBUG Processing 600/825 atomic regions from SNP 179790 to 180390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,288 DEBUG Processing 370/724 atomic regions from SNP 110849 to 111449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,495 DEBUG Processing 270/686 atomic regions from SNP 80773 to 81373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,499 DEBUG Processing 325/708 atomic regions from SNP 97485 to 98085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,520 DEBUG Processing 601/825 atomic regions from SNP 180090 to 180690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,522 DEBUG Processing 371/724 atomic regions from SNP 111149 to 111749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,725 DEBUG Processing 326/708 atomic regions from SNP 97785 to 98385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,730 DEBUG Processing 271/686 atomic regions from SNP 81073 to 81673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,759 DEBUG Processing 372/724 atomic regions from SNP 111449 to 112049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:41,764 DEBUG Processing 602/825 atomic regions from SNP 180390 to 180990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,951 DEBUG Processing 327/708 atomic regions from SNP 98085 to 98685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:41,965 DEBUG Processing 272/686 atomic regions from SNP 81373 to 81973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:41,993 DEBUG Processing 373/724 atomic regions from SNP 111749 to 112349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,009 DEBUG Processing 603/825 atomic regions from SNP 180690 to 181290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,229 DEBUG Processing 328/708 atomic regions from SNP 98385 to 98985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,251 DEBUG Processing 273/686 atomic regions from SNP 81673 to 82273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,268 DEBUG Processing 374/724 atomic regions from SNP 112049 to 112649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,298 DEBUG Processing 604/825 atomic regions from SNP 180990 to 181590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,459 DEBUG Processing 329/708 atomic regions from SNP 98685 to 99285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,487 DEBUG Processing 274/686 atomic regions from SNP 81973 to 82573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,504 DEBUG Processing 375/724 atomic regions from SNP 112349 to 112949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,553 DEBUG Processing 605/825 atomic regions from SNP 181290 to 181890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,686 DEBUG Processing 330/708 atomic regions from SNP 98985 to 99585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,722 DEBUG Processing 275/686 atomic regions from SNP 82273 to 82873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,735 DEBUG Processing 376/724 atomic regions from SNP 112649 to 113249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:42,791 DEBUG Processing 606/825 atomic regions from SNP 181590 to 182190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,916 DEBUG Processing 331/708 atomic regions from SNP 99285 to 99885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:42,954 DEBUG Processing 276/686 atomic regions from SNP 82573 to 83173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:42,973 DEBUG Processing 377/724 atomic regions from SNP 112949 to 113549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,027 DEBUG Processing 607/825 atomic regions from SNP 181890 to 182490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,150 DEBUG Processing 332/708 atomic regions from SNP 99585 to 100185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,187 DEBUG Processing 277/686 atomic regions from SNP 82873 to 83473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,235 DEBUG Processing 378/724 atomic regions from SNP 113249 to 113849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,264 DEBUG Processing 608/825 atomic regions from SNP 182190 to 182790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,382 DEBUG Processing 333/708 atomic regions from SNP 99885 to 100485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,418 DEBUG Processing 278/686 atomic regions from SNP 83173 to 83773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,473 DEBUG Processing 379/724 atomic regions from SNP 113549 to 114149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,502 DEBUG Processing 609/825 atomic regions from SNP 182490 to 183090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,604 DEBUG Processing 334/708 atomic regions from SNP 100185 to 100785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,647 DEBUG Processing 279/686 atomic regions from SNP 83473 to 84073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,707 DEBUG Processing 380/724 atomic regions from SNP 113849 to 114449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,747 DEBUG Processing 610/825 atomic regions from SNP 182790 to 183390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,822 DEBUG Processing 335/708 atomic regions from SNP 100485 to 101085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:43,878 DEBUG Processing 280/686 atomic regions from SNP 83773 to 84373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:43,943 DEBUG Processing 381/724 atomic regions from SNP 114149 to 114749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:43,996 DEBUG Processing 611/825 atomic regions from SNP 183090 to 183690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,048 DEBUG Processing 336/708 atomic regions from SNP 100785 to 101385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,104 DEBUG Processing 281/686 atomic regions from SNP 84073 to 84673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,177 DEBUG Processing 382/724 atomic regions from SNP 114449 to 115049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,239 DEBUG Processing 612/825 atomic regions from SNP 183390 to 183990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,279 DEBUG Processing 337/708 atomic regions from SNP 101085 to 101685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,327 DEBUG Processing 282/686 atomic regions from SNP 84373 to 84973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,408 DEBUG Processing 383/724 atomic regions from SNP 114749 to 115349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,488 DEBUG Processing 613/825 atomic regions from SNP 183690 to 184290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,509 DEBUG Processing 338/708 atomic regions from SNP 101385 to 101985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,551 DEBUG Processing 283/686 atomic regions from SNP 84673 to 85273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,633 DEBUG Processing 384/724 atomic regions from SNP 115049 to 115649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,733 DEBUG Processing 614/825 atomic regions from SNP 183990 to 184590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,738 DEBUG Processing 339/708 atomic regions from SNP 101685 to 102285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,774 DEBUG Processing 284/686 atomic regions from SNP 84973 to 85573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:44,874 DEBUG Processing 385/724 atomic regions from SNP 115349 to 115949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:44,979 DEBUG Processing 340/708 atomic regions from SNP 101985 to 102585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:44,988 DEBUG Processing 615/825 atomic regions from SNP 184290 to 184890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,012 DEBUG Processing 285/686 atomic regions from SNP 85273 to 85873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,106 DEBUG Processing 386/724 atomic regions from SNP 115649 to 116249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,223 DEBUG Processing 341/708 atomic regions from SNP 102285 to 102885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,248 DEBUG Processing 286/686 atomic regions from SNP 85573 to 86173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,253 DEBUG Processing 616/825 atomic regions from SNP 184590 to 185190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,333 DEBUG Processing 387/724 atomic regions from SNP 115949 to 116549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,454 DEBUG Processing 342/708 atomic regions from SNP 102585 to 103185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,483 DEBUG Processing 287/686 atomic regions from SNP 85873 to 86473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,529 DEBUG Processing 617/825 atomic regions from SNP 184890 to 185490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,563 DEBUG Processing 388/724 atomic regions from SNP 116249 to 116849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,684 DEBUG Processing 343/708 atomic regions from SNP 102885 to 103485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,709 DEBUG Processing 288/686 atomic regions from SNP 86173 to 86773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:45,800 DEBUG Processing 389/724 atomic regions from SNP 116549 to 117149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:45,805 DEBUG Processing 618/825 atomic regions from SNP 185190 to 185790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,910 DEBUG Processing 344/708 atomic regions from SNP 103185 to 103785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:45,934 DEBUG Processing 289/686 atomic regions from SNP 86473 to 87073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,059 DEBUG Processing 390/724 atomic regions from SNP 116849 to 117449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,113 DEBUG Processing 619/825 atomic regions from SNP 185490 to 186090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,165 DEBUG Processing 345/708 atomic regions from SNP 103485 to 104085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,175 DEBUG Processing 290/686 atomic regions from SNP 86773 to 87373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,280 DEBUG Processing 391/724 atomic regions from SNP 117149 to 117749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,398 DEBUG Processing 620/825 atomic regions from SNP 185790 to 186390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,406 DEBUG Processing 346/708 atomic regions from SNP 103785 to 104385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,408 DEBUG Processing 291/686 atomic regions from SNP 87073 to 87673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,507 DEBUG Processing 392/724 atomic regions from SNP 117449 to 118049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,631 DEBUG Processing 292/686 atomic regions from SNP 87373 to 87973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,636 DEBUG Processing 347/708 atomic regions from SNP 104085 to 104685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,672 DEBUG Processing 621/825 atomic regions from SNP 186090 to 186690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,738 DEBUG Processing 393/724 atomic regions from SNP 117749 to 118349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:46,854 DEBUG Processing 293/686 atomic regions from SNP 87673 to 88273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:46,865 DEBUG Processing 348/708 atomic regions from SNP 104385 to 104985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:46,935 DEBUG Processing 622/825 atomic regions from SNP 186390 to 186990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,962 DEBUG Processing 394/724 atomic regions from SNP 118049 to 118649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,081 DEBUG Processing 294/686 atomic regions from SNP 87973 to 88573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,096 DEBUG Processing 349/708 atomic regions from SNP 104685 to 105285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,179 DEBUG Processing 623/825 atomic regions from SNP 186690 to 187290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,191 DEBUG Processing 395/724 atomic regions from SNP 118349 to 118949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,304 DEBUG Processing 295/686 atomic regions from SNP 88273 to 88873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,324 DEBUG Processing 350/708 atomic regions from SNP 104985 to 105585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,432 DEBUG Processing 396/724 atomic regions from SNP 118649 to 119249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,433 DEBUG Processing 624/825 atomic regions from SNP 186990 to 187590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,540 DEBUG Processing 296/686 atomic regions from SNP 88573 to 89173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,553 DEBUG Processing 351/708 atomic regions from SNP 105285 to 105885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,668 DEBUG Processing 397/724 atomic regions from SNP 118949 to 119549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,697 DEBUG Processing 625/825 atomic regions from SNP 187290 to 187890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,780 DEBUG Processing 297/686 atomic regions from SNP 88873 to 89473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:47,793 DEBUG Processing 352/708 atomic regions from SNP 105585 to 106185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:47,903 DEBUG Processing 398/724 atomic regions from SNP 119249 to 119849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:47,954 DEBUG Processing 626/825 atomic regions from SNP 187590 to 188190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,018 DEBUG Processing 298/686 atomic regions from SNP 89173 to 89773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,021 DEBUG Processing 353/708 atomic regions from SNP 105885 to 106485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,080 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:48:48,139 DEBUG Processing 399/724 atomic regions from SNP 119549 to 120149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,217 DEBUG Processing 627/825 atomic regions from SNP 187890 to 188490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,254 DEBUG Processing 354/708 atomic regions from SNP 106185 to 106785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,272 DEBUG Processing 299/686 atomic regions from SNP 89473 to 90073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,380 DEBUG Processing 400/724 atomic regions from SNP 119849 to 120449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,490 DEBUG Processing 628/825 atomic regions from SNP 188190 to 188790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,495 DEBUG Processing 355/708 atomic regions from SNP 106485 to 107085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,523 DEBUG Processing 300/686 atomic regions from SNP 89773 to 90373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,620 DEBUG Processing 401/724 atomic regions from SNP 120149 to 120749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,734 DEBUG Processing 356/708 atomic regions from SNP 106785 to 107385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,756 DEBUG Processing 629/825 atomic regions from SNP 188490 to 189090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,757 DEBUG Processing 301/686 atomic regions from SNP 90073 to 90673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:48,864 DEBUG Processing 402/724 atomic regions from SNP 120449 to 121049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:48,971 DEBUG Processing 357/708 atomic regions from SNP 107085 to 107685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:48,990 DEBUG Processing 302/686 atomic regions from SNP 90373 to 90973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,003 DEBUG Processing 630/825 atomic regions from SNP 188790 to 189390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,096 DEBUG Processing 403/724 atomic regions from SNP 120749 to 121349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,217 DEBUG Processing 358/708 atomic regions from SNP 107385 to 107985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,229 DEBUG Processing 303/686 atomic regions from SNP 90673 to 91273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,252 DEBUG Processing 631/825 atomic regions from SNP 189090 to 189690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,333 DEBUG Processing 404/724 atomic regions from SNP 121049 to 121649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,466 DEBUG Processing 359/708 atomic regions from SNP 107685 to 108285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,483 DEBUG Processing 304/686 atomic regions from SNP 90973 to 91573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,515 DEBUG Processing 632/825 atomic regions from SNP 189390 to 189990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,570 DEBUG Processing 405/724 atomic regions from SNP 121349 to 121949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,713 DEBUG Processing 360/708 atomic regions from SNP 107985 to 108585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:49,748 DEBUG Processing 305/686 atomic regions from SNP 91273 to 91873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:49,792 DEBUG Processing 633/825 atomic regions from SNP 189690 to 190290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,811 DEBUG Processing 406/724 atomic regions from SNP 121649 to 122249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:49,971 DEBUG Processing 361/708 atomic regions from SNP 108285 to 108885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,017 DEBUG Processing 306/686 atomic regions from SNP 91573 to 92173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,053 DEBUG Processing 407/724 atomic regions from SNP 121949 to 122549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,068 DEBUG Processing 634/825 atomic regions from SNP 189990 to 190590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,235 DEBUG Processing 362/708 atomic regions from SNP 108585 to 109185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,266 DEBUG Processing 307/686 atomic regions from SNP 91873 to 92473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,289 DEBUG Processing 408/724 atomic regions from SNP 122249 to 122849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,336 DEBUG Processing 635/825 atomic regions from SNP 190290 to 190890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,500 DEBUG Processing 363/708 atomic regions from SNP 108885 to 109485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,516 DEBUG Processing 308/686 atomic regions from SNP 92173 to 92773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,538 DEBUG Processing 409/724 atomic regions from SNP 122549 to 123149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,580 DEBUG Processing 636/825 atomic regions from SNP 190590 to 191190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,770 DEBUG Processing 309/686 atomic regions from SNP 92473 to 93073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:50,777 DEBUG Processing 364/708 atomic regions from SNP 109185 to 109785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:50,802 DEBUG Processing 410/724 atomic regions from SNP 122849 to 123449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:50,828 DEBUG Processing 637/825 atomic regions from SNP 190890 to 191490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,034 DEBUG Processing 310/686 atomic regions from SNP 92773 to 93373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,035 DEBUG Processing 365/708 atomic regions from SNP 109485 to 110085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,071 DEBUG Processing 411/724 atomic regions from SNP 123149 to 123749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,077 DEBUG Processing 638/825 atomic regions from SNP 191190 to 191790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,269 DEBUG Processing 366/708 atomic regions from SNP 109785 to 110385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,284 DEBUG Processing 311/686 atomic regions from SNP 93073 to 93673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,316 DEBUG Processing 412/724 atomic regions from SNP 123449 to 124049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,330 DEBUG Processing 639/825 atomic regions from SNP 191490 to 192090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,525 DEBUG Processing 312/686 atomic regions from SNP 93373 to 93973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,526 DEBUG Processing 367/708 atomic regions from SNP 110085 to 110685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,558 DEBUG Processing 413/724 atomic regions from SNP 123749 to 124349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,580 DEBUG Processing 640/825 atomic regions from SNP 191790 to 192390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,766 DEBUG Processing 313/686 atomic regions from SNP 93673 to 94273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:51,792 DEBUG Processing 368/708 atomic regions from SNP 110385 to 110985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:51,802 DEBUG Processing 414/724 atomic regions from SNP 124049 to 124649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:51,831 DEBUG Processing 641/825 atomic regions from SNP 192090 to 192690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,004 DEBUG Processing 314/686 atomic regions from SNP 93973 to 94573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,039 DEBUG Processing 369/708 atomic regions from SNP 110685 to 111285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,049 DEBUG Processing 415/724 atomic regions from SNP 124349 to 124949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,079 DEBUG Processing 642/825 atomic regions from SNP 192390 to 192990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,246 DEBUG Processing 315/686 atomic regions from SNP 94273 to 94873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,274 DEBUG Processing 370/708 atomic regions from SNP 110985 to 111585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,290 DEBUG Processing 416/724 atomic regions from SNP 124649 to 125249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,326 DEBUG Processing 643/825 atomic regions from SNP 192690 to 193290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,479 DEBUG Processing 316/686 atomic regions from SNP 94573 to 95173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,502 DEBUG Processing 371/708 atomic regions from SNP 111285 to 111885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,533 DEBUG Processing 417/724 atomic regions from SNP 124949 to 125549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,578 DEBUG Processing 644/825 atomic regions from SNP 192990 to 193590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,707 DEBUG Processing 317/686 atomic regions from SNP 94873 to 95473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,724 DEBUG Processing 372/708 atomic regions from SNP 111585 to 112185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:52,770 DEBUG Processing 418/724 atomic regions from SNP 125249 to 125849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:52,822 DEBUG Processing 645/825 atomic regions from SNP 193290 to 193890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,938 DEBUG Processing 318/686 atomic regions from SNP 95173 to 95773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:52,966 DEBUG Processing 373/708 atomic regions from SNP 111885 to 112485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,032 DEBUG Processing 419/724 atomic regions from SNP 125549 to 126149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,099 DEBUG Processing 646/825 atomic regions from SNP 193590 to 194190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,179 DEBUG Processing 319/686 atomic regions from SNP 95473 to 96073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,220 DEBUG Processing 374/708 atomic regions from SNP 112185 to 112785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,282 DEBUG Processing 420/724 atomic regions from SNP 125849 to 126449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,364 DEBUG Processing 647/825 atomic regions from SNP 193890 to 194490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,416 DEBUG Processing 320/686 atomic regions from SNP 95773 to 96373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,447 DEBUG Processing 375/708 atomic regions from SNP 112485 to 113085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,534 DEBUG Processing 421/724 atomic regions from SNP 126149 to 126749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,606 DEBUG Processing 648/825 atomic regions from SNP 194190 to 194790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,645 DEBUG Processing 321/686 atomic regions from SNP 96073 to 96673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,669 DEBUG Processing 376/708 atomic regions from SNP 112785 to 113385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:53,802 DEBUG Processing 422/724 atomic regions from SNP 126449 to 127049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:53,851 DEBUG Processing 649/825 atomic regions from SNP 194490 to 195090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,876 DEBUG Processing 322/686 atomic regions from SNP 96373 to 96973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:53,896 DEBUG Processing 377/708 atomic regions from SNP 113085 to 113685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,036 DEBUG Processing 423/724 atomic regions from SNP 126749 to 127349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,094 DEBUG Processing 650/825 atomic regions from SNP 194790 to 195390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,113 DEBUG Processing 323/686 atomic regions from SNP 96673 to 97273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,126 DEBUG Processing 378/708 atomic regions from SNP 113385 to 113985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,292 DEBUG Processing 424/724 atomic regions from SNP 127049 to 127649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,335 DEBUG Processing 651/825 atomic regions from SNP 195090 to 195690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,348 DEBUG Processing 324/686 atomic regions from SNP 96973 to 97573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,353 DEBUG Processing 379/708 atomic regions from SNP 113685 to 114285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,556 DEBUG Processing 425/724 atomic regions from SNP 127349 to 127949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,573 DEBUG Processing 380/708 atomic regions from SNP 113985 to 114585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,573 DEBUG Processing 652/825 atomic regions from SNP 195390 to 195990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,577 DEBUG Processing 325/686 atomic regions from SNP 97273 to 97873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,811 DEBUG Processing 381/708 atomic regions from SNP 114285 to 114885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:54,813 DEBUG Processing 326/686 atomic regions from SNP 97573 to 98173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:54,819 DEBUG Processing 426/724 atomic regions from SNP 127649 to 128249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:54,829 DEBUG Processing 653/825 atomic regions from SNP 195690 to 196290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,046 DEBUG Processing 382/708 atomic regions from SNP 114585 to 115185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,056 DEBUG Processing 327/686 atomic regions from SNP 97873 to 98473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,082 DEBUG Processing 427/724 atomic regions from SNP 127949 to 128549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,083 DEBUG Processing 654/825 atomic regions from SNP 195990 to 196590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,276 DEBUG Processing 383/708 atomic regions from SNP 114885 to 115485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,296 DEBUG Processing 328/686 atomic regions from SNP 98173 to 98773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,323 DEBUG Processing 428/724 atomic regions from SNP 128249 to 128849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,341 DEBUG Processing 655/825 atomic regions from SNP 196290 to 196890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,499 DEBUG Processing 384/708 atomic regions from SNP 115185 to 115785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,531 DEBUG Processing 329/686 atomic regions from SNP 98473 to 99073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,560 DEBUG Processing 429/724 atomic regions from SNP 128549 to 129149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,604 DEBUG Processing 656/825 atomic regions from SNP 196590 to 197190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,732 DEBUG Processing 385/708 atomic regions from SNP 115485 to 116085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:55,765 DEBUG Processing 330/686 atomic regions from SNP 98773 to 99373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:55,793 DEBUG Processing 430/724 atomic regions from SNP 128849 to 129449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:55,847 DEBUG Processing 657/825 atomic regions from SNP 196890 to 197490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,959 DEBUG Processing 386/708 atomic regions from SNP 115785 to 116385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,005 DEBUG Processing 331/686 atomic regions from SNP 99073 to 99673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,029 DEBUG Processing 431/724 atomic regions from SNP 129149 to 129749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,074 DEBUG Processing 658/825 atomic regions from SNP 197190 to 197790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,207 DEBUG Processing 387/708 atomic regions from SNP 116085 to 116685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,259 DEBUG Processing 332/686 atomic regions from SNP 99373 to 99973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,267 DEBUG Processing 432/724 atomic regions from SNP 129449 to 130049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,311 DEBUG Processing 659/825 atomic regions from SNP 197490 to 198090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,427 DEBUG Processing 388/708 atomic regions from SNP 116385 to 116985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,496 DEBUG Processing 333/686 atomic regions from SNP 99673 to 100273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,531 DEBUG Processing 433/724 atomic regions from SNP 129749 to 130349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,574 DEBUG Processing 660/825 atomic regions from SNP 197790 to 198390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,659 DEBUG Processing 389/708 atomic regions from SNP 116685 to 117285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,731 DEBUG Processing 334/686 atomic regions from SNP 99973 to 100573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:56,805 DEBUG Processing 434/724 atomic regions from SNP 130049 to 130649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:56,845 DEBUG Processing 661/825 atomic regions from SNP 198090 to 198690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,889 DEBUG Processing 390/708 atomic regions from SNP 116985 to 117585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:56,960 DEBUG Processing 335/686 atomic regions from SNP 100273 to 100873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,077 DEBUG Processing 435/724 atomic regions from SNP 130349 to 130949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,109 DEBUG Processing 662/825 atomic regions from SNP 198390 to 198990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,112 DEBUG Processing 391/708 atomic regions from SNP 117285 to 117885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,201 DEBUG Processing 336/686 atomic regions from SNP 100573 to 101173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,336 DEBUG Processing 392/708 atomic regions from SNP 117585 to 118185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,356 DEBUG Processing 436/724 atomic regions from SNP 130649 to 131249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,377 DEBUG Processing 663/825 atomic regions from SNP 198690 to 199290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,437 DEBUG Processing 337/686 atomic regions from SNP 100873 to 101473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,558 DEBUG Processing 393/708 atomic regions from SNP 117885 to 118485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,628 DEBUG Processing 437/724 atomic regions from SNP 130949 to 131549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,637 DEBUG Processing 664/825 atomic regions from SNP 198990 to 199590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,675 DEBUG Processing 338/686 atomic regions from SNP 101173 to 101773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,805 DEBUG Processing 394/708 atomic regions from SNP 118185 to 118785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:57,921 DEBUG Processing 438/724 atomic regions from SNP 131249 to 131849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:57,943 DEBUG Processing 339/686 atomic regions from SNP 101473 to 102073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:57,956 DEBUG Processing 665/825 atomic regions from SNP 199290 to 199890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,038 DEBUG Processing 395/708 atomic regions from SNP 118485 to 119085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,183 DEBUG Processing 340/686 atomic regions from SNP 101773 to 102373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,196 DEBUG Processing 439/724 atomic regions from SNP 131549 to 132149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,232 DEBUG Processing 666/825 atomic regions from SNP 199590 to 200190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,259 DEBUG Processing 396/708 atomic regions from SNP 118785 to 119385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,421 DEBUG Processing 341/686 atomic regions from SNP 102073 to 102673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,473 DEBUG Processing 440/724 atomic regions from SNP 131849 to 132449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,487 DEBUG Processing 397/708 atomic regions from SNP 119085 to 119685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,502 DEBUG Processing 667/825 atomic regions from SNP 199890 to 200490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,662 DEBUG Processing 342/686 atomic regions from SNP 102373 to 102973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,725 DEBUG Processing 398/708 atomic regions from SNP 119385 to 119985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,752 DEBUG Processing 441/724 atomic regions from SNP 132149 to 132749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:58,753 DEBUG Processing 668/825 atomic regions from SNP 200190 to 200790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,901 DEBUG Processing 343/686 atomic regions from SNP 102673 to 103273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:58,953 DEBUG Processing 399/708 atomic regions from SNP 119685 to 120285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:58,998 DEBUG Processing 669/825 atomic regions from SNP 200490 to 201090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,037 DEBUG Processing 442/724 atomic regions from SNP 132449 to 133049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,134 DEBUG Processing 344/686 atomic regions from SNP 102973 to 103573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,176 DEBUG Processing 400/708 atomic regions from SNP 119985 to 120585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,245 DEBUG Processing 670/825 atomic regions from SNP 200790 to 201390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,312 DEBUG Processing 443/724 atomic regions from SNP 132749 to 133349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,360 DEBUG Processing 345/686 atomic regions from SNP 103273 to 103873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,397 DEBUG Processing 401/708 atomic regions from SNP 120285 to 120885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,490 DEBUG Processing 671/825 atomic regions from SNP 201090 to 201690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,614 DEBUG Processing 444/724 atomic regions from SNP 133049 to 133649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:48:59,636 DEBUG Processing 346/686 atomic regions from SNP 103573 to 104173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,651 DEBUG Processing 402/708 atomic regions from SNP 120585 to 121185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,750 DEBUG Processing 672/825 atomic regions from SNP 201390 to 201990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,874 DEBUG Processing 347/686 atomic regions from SNP 103873 to 104473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:48:59,883 DEBUG Processing 403/708 atomic regions from SNP 120885 to 121485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:48:59,891 DEBUG Processing 445/724 atomic regions from SNP 133349 to 133949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,025 DEBUG Processing 673/825 atomic regions from SNP 201690 to 202290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,108 DEBUG Processing 348/686 atomic regions from SNP 104173 to 104773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,111 DEBUG Processing 404/708 atomic regions from SNP 121185 to 121785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,162 DEBUG Processing 446/724 atomic regions from SNP 133649 to 134249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,269 DEBUG Processing 674/825 atomic regions from SNP 201990 to 202590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,334 DEBUG Processing 405/708 atomic regions from SNP 121485 to 122085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,348 DEBUG Processing 349/686 atomic regions from SNP 104473 to 105073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,407 DEBUG Processing 447/724 atomic regions from SNP 133949 to 134549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,520 DEBUG Processing 675/825 atomic regions from SNP 202290 to 202890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,584 DEBUG Processing 406/708 atomic regions from SNP 121785 to 122385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,605 DEBUG Processing 350/686 atomic regions from SNP 104773 to 105373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,656 DEBUG Processing 448/724 atomic regions from SNP 134249 to 134849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:00,797 DEBUG Processing 676/825 atomic regions from SNP 202590 to 203190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,842 DEBUG Processing 407/708 atomic regions from SNP 122085 to 122685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:00,882 DEBUG Processing 351/686 atomic regions from SNP 105073 to 105673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:00,934 DEBUG Processing 449/724 atomic regions from SNP 134549 to 135149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,093 DEBUG Processing 677/825 atomic regions from SNP 202890 to 203490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,108 DEBUG Processing 408/708 atomic regions from SNP 122385 to 122985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,131 DEBUG Processing 352/686 atomic regions from SNP 105373 to 105973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,192 DEBUG Processing 450/724 atomic regions from SNP 134849 to 135449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,338 DEBUG Processing 409/708 atomic regions from SNP 122685 to 123285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,342 DEBUG Processing 678/825 atomic regions from SNP 203190 to 203790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,371 DEBUG Processing 353/686 atomic regions from SNP 105673 to 106273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,447 DEBUG Processing 451/724 atomic regions from SNP 135149 to 135749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,597 DEBUG Processing 410/708 atomic regions from SNP 122985 to 123585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,620 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:49:01,621 DEBUG Processing 679/825 atomic regions from SNP 203490 to 204090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,621 DEBUG chr14: Signal quantile: 0.994. signal threshold: 12. Best RMSEA: 0.024 2025-01-31 09:49:01,643 DEBUG Processing 354/686 atomic regions from SNP 105973 to 106573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,702 DEBUG Processing 452/724 atomic regions from SNP 135449 to 136049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:01,826 DEBUG Processing 411/708 atomic regions from SNP 123285 to 123885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:01,869 DEBUG Processing 680/825 atomic regions from SNP 203790 to 204390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,892 DEBUG Processing 355/686 atomic regions from SNP 106273 to 106873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:01,941 DEBUG Processing 453/724 atomic regions from SNP 135749 to 136349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,055 DEBUG Processing 412/708 atomic regions from SNP 123585 to 124185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,115 DEBUG Processing 681/825 atomic regions from SNP 204090 to 204690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,132 DEBUG Processing 356/686 atomic regions from SNP 106573 to 107173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,181 DEBUG Processing 454/724 atomic regions from SNP 136049 to 136649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,309 DEBUG Processing 413/708 atomic regions from SNP 123885 to 124485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,358 DEBUG Processing 682/825 atomic regions from SNP 204390 to 204990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,370 DEBUG Processing 357/686 atomic regions from SNP 106873 to 107473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,418 DEBUG Processing 455/724 atomic regions from SNP 136349 to 136949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,566 DEBUG Processing 414/708 atomic regions from SNP 124185 to 124785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,603 DEBUG Processing 683/825 atomic regions from SNP 204690 to 205290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,612 DEBUG Processing 358/686 atomic regions from SNP 107173 to 107773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,655 DEBUG Processing 456/724 atomic regions from SNP 136649 to 137249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:02,801 DEBUG Processing 415/708 atomic regions from SNP 124485 to 125085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:02,850 DEBUG Processing 359/686 atomic regions from SNP 107473 to 108073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:02,861 DEBUG Processing 684/825 atomic regions from SNP 204990 to 205590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,893 DEBUG Processing 457/724 atomic regions from SNP 136949 to 137549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,036 DEBUG Processing 416/708 atomic regions from SNP 124785 to 125385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,103 DEBUG Processing 360/686 atomic regions from SNP 107773 to 108373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,138 DEBUG Processing 458/724 atomic regions from SNP 137249 to 137849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,151 DEBUG Processing 685/825 atomic regions from SNP 205290 to 205890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,261 DEBUG Processing 417/708 atomic regions from SNP 125085 to 125685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,348 DEBUG Processing 361/686 atomic regions from SNP 108073 to 108673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,383 DEBUG Processing 459/724 atomic regions from SNP 137549 to 138149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,439 DEBUG Processing 686/825 atomic regions from SNP 205590 to 206190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,483 DEBUG Processing 418/708 atomic regions from SNP 125385 to 125985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,587 DEBUG Processing 362/686 atomic regions from SNP 108373 to 108973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,625 DEBUG Processing 460/724 atomic regions from SNP 137849 to 138449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,709 DEBUG Processing 419/708 atomic regions from SNP 125685 to 126285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,725 DEBUG Processing 687/825 atomic regions from SNP 205890 to 206490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,833 DEBUG Processing 363/686 atomic regions from SNP 108673 to 109273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:03,879 DEBUG Processing 461/724 atomic regions from SNP 138149 to 138749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:03,940 DEBUG Processing 420/708 atomic regions from SNP 125985 to 126585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:03,996 DEBUG Processing 688/825 atomic regions from SNP 206190 to 206790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,996 DEBUG chr14 total SNP count: 191688 2025-01-31 09:49:03,996 DEBUG chr14 length: 124902244 2025-01-31 09:49:03,997 DEBUG ----------------------------------------- 2025-01-31 09:49:03,997 INFO Processing SNPs in chr14 2025-01-31 09:49:04,079 DEBUG Processing 364/686 atomic regions from SNP 108973 to 109573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,131 DEBUG Processing 462/724 atomic regions from SNP 138449 to 139049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,186 DEBUG Processing 421/708 atomic regions from SNP 126285 to 126885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,247 DEBUG Processing 689/825 atomic regions from SNP 206490 to 207090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,312 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 18), (18, 118), (118, 191688)] 2025-01-31 09:49:04,319 DEBUG Processing 365/686 atomic regions from SNP 109273 to 109873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,380 DEBUG Processing 463/724 atomic regions from SNP 138749 to 139349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,399 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:04,407 DEBUG Processing 422/708 atomic regions from SNP 126585 to 127185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,413 DEBUG Segmenting atomic regions: 2025-01-31 09:49:04,499 DEBUG Processing 690/825 atomic regions from SNP 206790 to 207390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,500 DEBUG Processing 1/1 atomic regions from SNP 0 to 99 for chr14 (subchromosome 2 of 3). 2025-01-31 09:49:04,503 DEBUG Unique SNPs positions in subchromosome 2: 100 2025-01-31 09:49:04,504 DEBUG Subchromosome time: 0.10465382412075996, subchromosome SNPs: 100 2025-01-31 09:49:04,554 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:04,557 DEBUG Processing 366/686 atomic regions from SNP 109573 to 110173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,629 DEBUG Processing 464/724 atomic regions from SNP 139049 to 139649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,634 DEBUG Processing 423/708 atomic regions from SNP 126885 to 127485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,737 DEBUG Processing 691/825 atomic regions from SNP 207090 to 207690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,799 DEBUG Processing 367/686 atomic regions from SNP 109873 to 110473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:04,861 DEBUG Processing 424/708 atomic regions from SNP 127185 to 127785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:04,869 DEBUG Processing 465/724 atomic regions from SNP 139349 to 139949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:04,994 DEBUG Processing 692/825 atomic regions from SNP 207390 to 207990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,042 DEBUG Processing 368/686 atomic regions from SNP 110173 to 110773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,089 DEBUG Processing 425/708 atomic regions from SNP 127485 to 128085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,118 DEBUG Processing 466/724 atomic regions from SNP 139649 to 140249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,237 DEBUG Processing 693/825 atomic regions from SNP 207690 to 208290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,282 DEBUG Processing 369/686 atomic regions from SNP 110473 to 111073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,313 DEBUG Processing 426/708 atomic regions from SNP 127785 to 128385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,357 DEBUG Processing 467/724 atomic regions from SNP 139949 to 140549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,480 DEBUG Processing 694/825 atomic regions from SNP 207990 to 208590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,521 DEBUG Processing 370/686 atomic regions from SNP 110773 to 111373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,538 DEBUG Processing 427/708 atomic regions from SNP 128085 to 128685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,589 DEBUG Processing 468/724 atomic regions from SNP 140249 to 140849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,720 DEBUG Processing 695/825 atomic regions from SNP 208290 to 208890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,762 DEBUG Processing 371/686 atomic regions from SNP 111073 to 111673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:05,764 DEBUG Processing 428/708 atomic regions from SNP 128385 to 128985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:05,823 DEBUG Processing 469/724 atomic regions from SNP 140549 to 141149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:05,965 DEBUG Processing 696/825 atomic regions from SNP 208590 to 209190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,990 DEBUG Processing 429/708 atomic regions from SNP 128685 to 129285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,008 DEBUG Processing 372/686 atomic regions from SNP 111373 to 111973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,060 DEBUG Processing 470/724 atomic regions from SNP 140849 to 141449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,209 DEBUG Processing 697/825 atomic regions from SNP 208890 to 209490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,217 DEBUG Processing 430/708 atomic regions from SNP 128985 to 129585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,246 DEBUG Processing 373/686 atomic regions from SNP 111673 to 112273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,295 DEBUG Processing 471/724 atomic regions from SNP 141149 to 141749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,448 DEBUG Processing 431/708 atomic regions from SNP 129285 to 129885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,460 DEBUG Processing 698/825 atomic regions from SNP 209190 to 209790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,488 DEBUG Processing 374/686 atomic regions from SNP 111973 to 112573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,533 DEBUG Processing 472/724 atomic regions from SNP 141449 to 142049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,681 DEBUG Processing 432/708 atomic regions from SNP 129585 to 130185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,711 DEBUG Processing 699/825 atomic regions from SNP 209490 to 210090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,731 DEBUG Processing 375/686 atomic regions from SNP 112273 to 112873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:06,769 DEBUG Processing 473/724 atomic regions from SNP 141749 to 142349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:06,916 DEBUG Processing 433/708 atomic regions from SNP 129885 to 130485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:06,963 DEBUG Processing 700/825 atomic regions from SNP 209790 to 210390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,007 DEBUG Processing 474/724 atomic regions from SNP 142049 to 142649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,010 DEBUG Processing 376/686 atomic regions from SNP 112573 to 113173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,141 DEBUG Processing 434/708 atomic regions from SNP 130185 to 130785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,214 DEBUG Processing 701/825 atomic regions from SNP 210090 to 210690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,251 DEBUG Processing 475/724 atomic regions from SNP 142349 to 142949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,253 DEBUG Processing 377/686 atomic regions from SNP 112873 to 113473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,357 DEBUG Processing 435/708 atomic regions from SNP 130485 to 131085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,473 DEBUG Processing 702/825 atomic regions from SNP 210390 to 210990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,495 DEBUG Processing 476/724 atomic regions from SNP 142649 to 143249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,495 DEBUG Processing 378/686 atomic regions from SNP 113173 to 113773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,596 DEBUG Processing 436/708 atomic regions from SNP 130785 to 131385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,736 DEBUG Processing 703/825 atomic regions from SNP 210690 to 211290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,740 DEBUG Processing 379/686 atomic regions from SNP 113473 to 114073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,744 DEBUG Processing 477/724 atomic regions from SNP 142949 to 143549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,851 DEBUG Processing 437/708 atomic regions from SNP 131085 to 131685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:07,982 DEBUG Processing 380/686 atomic regions from SNP 113773 to 114373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:07,987 DEBUG Processing 478/724 atomic regions from SNP 143249 to 143849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:07,995 DEBUG Processing 704/825 atomic regions from SNP 210990 to 211590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,112 DEBUG Processing 438/708 atomic regions from SNP 131385 to 131985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,218 DEBUG Processing 381/686 atomic regions from SNP 114073 to 114673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,226 DEBUG Processing 479/724 atomic regions from SNP 143549 to 144149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,237 DEBUG Processing 705/825 atomic regions from SNP 211290 to 211890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,380 DEBUG Processing 439/708 atomic regions from SNP 131685 to 132285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,457 DEBUG Processing 382/686 atomic regions from SNP 114373 to 114973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,465 DEBUG Processing 480/724 atomic regions from SNP 143849 to 144449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,476 DEBUG Processing 706/825 atomic regions from SNP 211590 to 212190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,627 DEBUG Processing 440/708 atomic regions from SNP 131985 to 132585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,696 DEBUG Processing 383/686 atomic regions from SNP 114673 to 115273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,705 DEBUG Processing 481/724 atomic regions from SNP 144149 to 144749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,731 DEBUG Processing 707/825 atomic regions from SNP 211890 to 212490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,853 DEBUG Processing 441/708 atomic regions from SNP 132285 to 132885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:08,937 DEBUG Processing 384/686 atomic regions from SNP 114973 to 115573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:08,946 DEBUG Processing 482/724 atomic regions from SNP 144449 to 145049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,007 DEBUG Processing 708/825 atomic regions from SNP 212190 to 212790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,088 DEBUG Processing 442/708 atomic regions from SNP 132585 to 133185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,178 DEBUG Processing 385/686 atomic regions from SNP 115273 to 115873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,185 DEBUG Processing 483/724 atomic regions from SNP 144749 to 145349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,265 DEBUG Processing 709/825 atomic regions from SNP 212490 to 213090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,353 DEBUG Processing 443/708 atomic regions from SNP 132885 to 133485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,414 DEBUG Processing 386/686 atomic regions from SNP 115573 to 116173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,435 DEBUG Processing 484/724 atomic regions from SNP 145049 to 145649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,543 DEBUG Processing 710/825 atomic regions from SNP 212790 to 213390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,619 DEBUG Processing 444/708 atomic regions from SNP 133185 to 133785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,648 DEBUG Processing 387/686 atomic regions from SNP 115873 to 116473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,670 DEBUG Processing 485/724 atomic regions from SNP 145349 to 145949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,797 DEBUG Processing 711/825 atomic regions from SNP 213090 to 213690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,883 DEBUG Processing 388/686 atomic regions from SNP 116173 to 116773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:09,887 DEBUG Processing 445/708 atomic regions from SNP 133485 to 134085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:09,909 DEBUG Processing 486/724 atomic regions from SNP 145649 to 146249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,034 DEBUG Processing 712/825 atomic regions from SNP 213390 to 213990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,124 DEBUG Processing 389/686 atomic regions from SNP 116473 to 117073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,144 DEBUG Processing 446/708 atomic regions from SNP 133785 to 134385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,151 DEBUG Processing 487/724 atomic regions from SNP 145949 to 146549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,273 DEBUG Processing 713/825 atomic regions from SNP 213690 to 214290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,364 DEBUG Processing 390/686 atomic regions from SNP 116773 to 117373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,383 DEBUG Processing 447/708 atomic regions from SNP 134085 to 134685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,394 DEBUG Processing 488/724 atomic regions from SNP 146249 to 146849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,518 DEBUG Processing 714/825 atomic regions from SNP 213990 to 214590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,596 DEBUG Processing 391/686 atomic regions from SNP 117073 to 117673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,617 DEBUG Processing 448/708 atomic regions from SNP 134385 to 134985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,630 DEBUG Processing 489/724 atomic regions from SNP 146549 to 147149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,770 DEBUG Processing 715/825 atomic regions from SNP 214290 to 214890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,832 DEBUG Processing 392/686 atomic regions from SNP 117373 to 117973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,850 DEBUG Processing 449/708 atomic regions from SNP 134685 to 135285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,869 DEBUG Processing 490/724 atomic regions from SNP 146849 to 147449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,019 DEBUG Processing 716/825 atomic regions from SNP 214590 to 215190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,070 DEBUG Processing 393/686 atomic regions from SNP 117673 to 118273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,080 DEBUG Processing 450/708 atomic regions from SNP 134985 to 135585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,106 DEBUG Processing 491/724 atomic regions from SNP 147149 to 147749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,275 DEBUG Processing 717/825 atomic regions from SNP 214890 to 215490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,306 DEBUG Processing 394/686 atomic regions from SNP 117973 to 118573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,318 DEBUG Processing 451/708 atomic regions from SNP 135285 to 135885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,344 DEBUG Processing 492/724 atomic regions from SNP 147449 to 148049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,526 DEBUG Processing 718/825 atomic regions from SNP 215190 to 215790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,539 DEBUG Processing 395/686 atomic regions from SNP 118273 to 118873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,560 DEBUG Processing 452/708 atomic regions from SNP 135585 to 136185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,581 DEBUG Processing 493/724 atomic regions from SNP 147749 to 148349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,773 DEBUG Processing 719/825 atomic regions from SNP 215490 to 216090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,775 DEBUG Processing 396/686 atomic regions from SNP 118573 to 119173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,796 DEBUG Processing 453/708 atomic regions from SNP 135885 to 136485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,816 DEBUG Processing 494/724 atomic regions from SNP 148049 to 148649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,007 DEBUG Processing 397/686 atomic regions from SNP 118873 to 119473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,013 DEBUG Processing 720/825 atomic regions from SNP 215790 to 216390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,026 DEBUG Processing 454/708 atomic regions from SNP 136185 to 136785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,053 DEBUG Processing 495/724 atomic regions from SNP 148349 to 148949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,239 DEBUG Processing 398/686 atomic regions from SNP 119173 to 119773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,247 DEBUG Processing 721/825 atomic regions from SNP 216090 to 216690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,249 DEBUG Processing 455/708 atomic regions from SNP 136485 to 137085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,289 DEBUG Processing 496/724 atomic regions from SNP 148649 to 149249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,469 DEBUG Processing 456/708 atomic regions from SNP 136785 to 137385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,470 DEBUG Processing 399/686 atomic regions from SNP 119473 to 120073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,489 DEBUG Processing 722/825 atomic regions from SNP 216390 to 216990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,525 DEBUG Processing 497/724 atomic regions from SNP 148949 to 149549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,695 DEBUG Processing 457/708 atomic regions from SNP 137085 to 137685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,702 DEBUG Processing 400/686 atomic regions from SNP 119773 to 120373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,733 DEBUG Processing 723/825 atomic regions from SNP 216690 to 217290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,763 DEBUG Processing 498/724 atomic regions from SNP 149249 to 149849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,916 DEBUG Processing 458/708 atomic regions from SNP 137385 to 137985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,935 DEBUG Processing 401/686 atomic regions from SNP 120073 to 120673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,975 DEBUG Processing 724/825 atomic regions from SNP 216990 to 217590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,003 DEBUG Processing 499/724 atomic regions from SNP 149549 to 150149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,140 DEBUG Processing 459/708 atomic regions from SNP 137685 to 138285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,173 DEBUG Processing 402/686 atomic regions from SNP 120373 to 120973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,227 DEBUG Processing 725/825 atomic regions from SNP 217290 to 217890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,269 DEBUG Processing 500/724 atomic regions from SNP 149849 to 150449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,371 DEBUG Processing 460/708 atomic regions from SNP 137985 to 138585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,401 DEBUG Processing 403/686 atomic regions from SNP 120673 to 121273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,464 DEBUG Processing 726/825 atomic regions from SNP 217590 to 218190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,536 DEBUG Processing 501/724 atomic regions from SNP 150149 to 150749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,601 DEBUG Processing 461/708 atomic regions from SNP 138285 to 138885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,634 DEBUG Processing 404/686 atomic regions from SNP 120973 to 121573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,704 DEBUG Processing 727/825 atomic regions from SNP 217890 to 218490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,777 DEBUG Processing 502/724 atomic regions from SNP 150449 to 151049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,833 DEBUG Processing 462/708 atomic regions from SNP 138585 to 139185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,889 DEBUG Processing 405/686 atomic regions from SNP 121273 to 121873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,948 DEBUG Processing 728/825 atomic regions from SNP 218190 to 218790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,014 DEBUG Processing 503/724 atomic regions from SNP 150749 to 151349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,056 DEBUG Processing 463/708 atomic regions from SNP 138885 to 139485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,131 DEBUG Processing 406/686 atomic regions from SNP 121573 to 122173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,197 DEBUG Processing 729/825 atomic regions from SNP 218490 to 219090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,254 DEBUG Processing 504/724 atomic regions from SNP 151049 to 151649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,290 DEBUG Processing 464/708 atomic regions from SNP 139185 to 139785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,364 DEBUG Processing 407/686 atomic regions from SNP 121873 to 122473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,448 DEBUG Processing 730/825 atomic regions from SNP 218790 to 219390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,497 DEBUG Processing 505/724 atomic regions from SNP 151349 to 151949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,527 DEBUG Processing 465/708 atomic regions from SNP 139485 to 140085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,599 DEBUG Processing 408/686 atomic regions from SNP 122173 to 122773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,696 DEBUG Processing 731/825 atomic regions from SNP 219090 to 219690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,743 DEBUG Processing 506/724 atomic regions from SNP 151649 to 152249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,761 DEBUG Processing 466/708 atomic regions from SNP 139785 to 140385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,860 DEBUG Processing 409/686 atomic regions from SNP 122473 to 123073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,942 DEBUG Processing 732/825 atomic regions from SNP 219390 to 219990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,989 DEBUG Processing 507/724 atomic regions from SNP 151949 to 152549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,997 DEBUG Processing 467/708 atomic regions from SNP 140085 to 140685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,109 DEBUG Processing 410/686 atomic regions from SNP 122773 to 123373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,182 DEBUG Processing 733/825 atomic regions from SNP 219690 to 220290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,224 DEBUG Processing 468/708 atomic regions from SNP 140385 to 140985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,234 DEBUG Processing 508/724 atomic regions from SNP 152249 to 152849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,350 DEBUG Processing 411/686 atomic regions from SNP 123073 to 123673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,437 DEBUG Processing 734/825 atomic regions from SNP 219990 to 220590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,461 DEBUG Processing 469/708 atomic regions from SNP 140685 to 141285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,478 DEBUG Processing 509/724 atomic regions from SNP 152549 to 153149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,590 DEBUG Processing 412/686 atomic regions from SNP 123373 to 123973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,686 DEBUG Processing 735/825 atomic regions from SNP 220290 to 220890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,702 DEBUG Processing 470/708 atomic regions from SNP 140985 to 141585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,727 DEBUG Processing 510/724 atomic regions from SNP 152849 to 153449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,840 DEBUG Processing 413/686 atomic regions from SNP 123673 to 124273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,936 DEBUG Processing 736/825 atomic regions from SNP 220590 to 221190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,945 DEBUG Processing 471/708 atomic regions from SNP 141285 to 141885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,974 DEBUG Processing 511/724 atomic regions from SNP 153149 to 153749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,091 DEBUG Processing 414/686 atomic regions from SNP 123973 to 124573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,184 DEBUG Processing 472/708 atomic regions from SNP 141585 to 142185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,186 DEBUG Processing 737/825 atomic regions from SNP 220890 to 221490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,235 DEBUG Processing 512/724 atomic regions from SNP 153449 to 154049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,332 DEBUG Processing 415/686 atomic regions from SNP 124273 to 124873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,413 DEBUG Processing 473/708 atomic regions from SNP 141885 to 142485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,438 DEBUG Processing 738/825 atomic regions from SNP 221190 to 221790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,488 DEBUG Processing 513/724 atomic regions from SNP 153749 to 154349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,575 DEBUG Processing 416/686 atomic regions from SNP 124573 to 125173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,638 DEBUG Processing 474/708 atomic regions from SNP 142185 to 142785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,720 DEBUG Processing 739/825 atomic regions from SNP 221490 to 222090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,728 DEBUG Processing 514/724 atomic regions from SNP 154049 to 154649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,817 DEBUG Processing 417/686 atomic regions from SNP 124873 to 125473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,862 DEBUG Processing 475/708 atomic regions from SNP 142485 to 143085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,976 DEBUG Processing 515/724 atomic regions from SNP 154349 to 154949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,999 DEBUG Processing 740/825 atomic regions from SNP 221790 to 222390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,059 DEBUG Processing 418/686 atomic regions from SNP 125173 to 125773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,089 DEBUG Processing 476/708 atomic regions from SNP 142785 to 143385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,214 DEBUG Processing 516/724 atomic regions from SNP 154649 to 155249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,280 DEBUG Processing 741/825 atomic regions from SNP 222090 to 222690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,314 DEBUG Processing 419/686 atomic regions from SNP 125473 to 126073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,320 DEBUG Processing 477/708 atomic regions from SNP 143085 to 143685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,454 DEBUG Processing 517/724 atomic regions from SNP 154949 to 155549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,551 DEBUG Processing 742/825 atomic regions from SNP 222390 to 222990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,570 DEBUG Processing 478/708 atomic regions from SNP 143385 to 143985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,586 DEBUG Processing 420/686 atomic regions from SNP 125773 to 126373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,690 DEBUG Processing 518/724 atomic regions from SNP 155249 to 155849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,809 DEBUG Processing 743/825 atomic regions from SNP 222690 to 223290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,813 DEBUG Processing 479/708 atomic regions from SNP 143685 to 144285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,846 DEBUG Processing 421/686 atomic regions from SNP 126073 to 126673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,929 DEBUG Processing 519/724 atomic regions from SNP 155549 to 156149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,058 DEBUG Processing 480/708 atomic regions from SNP 143985 to 144585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,076 DEBUG Processing 744/825 atomic regions from SNP 222990 to 223590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,116 DEBUG Processing 422/686 atomic regions from SNP 126373 to 126973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,171 DEBUG Processing 520/724 atomic regions from SNP 155849 to 156449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,294 DEBUG Processing 481/708 atomic regions from SNP 144285 to 144885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,328 DEBUG Processing 745/825 atomic regions from SNP 223290 to 223890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,375 DEBUG Processing 423/686 atomic regions from SNP 126673 to 127273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,418 DEBUG Processing 521/724 atomic regions from SNP 156149 to 156749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,529 DEBUG Processing 482/708 atomic regions from SNP 144585 to 145185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,579 DEBUG Processing 746/825 atomic regions from SNP 223590 to 224190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,623 DEBUG Processing 424/686 atomic regions from SNP 126973 to 127573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,664 DEBUG Processing 522/724 atomic regions from SNP 156449 to 157049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,764 DEBUG Processing 483/708 atomic regions from SNP 144885 to 145485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,834 DEBUG Processing 747/825 atomic regions from SNP 223890 to 224490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,894 DEBUG Processing 425/686 atomic regions from SNP 127273 to 127873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,909 DEBUG Processing 523/724 atomic regions from SNP 156749 to 157349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,994 DEBUG Processing 484/708 atomic regions from SNP 145185 to 145785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,083 DEBUG Processing 748/825 atomic regions from SNP 224190 to 224790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,151 DEBUG Processing 426/686 atomic regions from SNP 127573 to 128173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,155 DEBUG Processing 524/724 atomic regions from SNP 157049 to 157649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,232 DEBUG Processing 485/708 atomic regions from SNP 145485 to 146085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,337 DEBUG Processing 749/825 atomic regions from SNP 224490 to 225090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,401 DEBUG Processing 427/686 atomic regions from SNP 127873 to 128473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,406 DEBUG Processing 525/724 atomic regions from SNP 157349 to 157949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,478 DEBUG Processing 486/708 atomic regions from SNP 145785 to 146385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,606 DEBUG Processing 750/825 atomic regions from SNP 224790 to 225390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,660 DEBUG Processing 526/724 atomic regions from SNP 157649 to 158249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,663 DEBUG Processing 428/686 atomic regions from SNP 128173 to 128773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,723 DEBUG Processing 487/708 atomic regions from SNP 146085 to 146685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,884 DEBUG Processing 751/825 atomic regions from SNP 225090 to 225690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,907 DEBUG Processing 527/724 atomic regions from SNP 157949 to 158549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,932 DEBUG Processing 429/686 atomic regions from SNP 128473 to 129073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,964 DEBUG Processing 488/708 atomic regions from SNP 146385 to 146985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,150 DEBUG Processing 752/825 atomic regions from SNP 225390 to 225990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,165 DEBUG Processing 528/724 atomic regions from SNP 158249 to 158849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,178 DEBUG Processing 430/686 atomic regions from SNP 128773 to 129373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,204 DEBUG Processing 489/708 atomic regions from SNP 146685 to 147285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,409 DEBUG Processing 529/724 atomic regions from SNP 158549 to 159149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,411 DEBUG Processing 753/825 atomic regions from SNP 225690 to 226290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,445 DEBUG Processing 431/686 atomic regions from SNP 129073 to 129673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,445 DEBUG Processing 490/708 atomic regions from SNP 146985 to 147585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,648 DEBUG Processing 530/724 atomic regions from SNP 158849 to 159449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,668 DEBUG Processing 754/825 atomic regions from SNP 225990 to 226590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,683 DEBUG Processing 432/686 atomic regions from SNP 129373 to 129973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,686 DEBUG Processing 491/708 atomic regions from SNP 147285 to 147885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,893 DEBUG Processing 531/724 atomic regions from SNP 159149 to 159749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,923 DEBUG Processing 755/825 atomic regions from SNP 226290 to 226890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,928 DEBUG Processing 433/686 atomic regions from SNP 129673 to 130273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,931 DEBUG Processing 492/708 atomic regions from SNP 147585 to 148185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,139 DEBUG Processing 532/724 atomic regions from SNP 159449 to 160049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,172 DEBUG Processing 493/708 atomic regions from SNP 147885 to 148485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,178 DEBUG Processing 434/686 atomic regions from SNP 129973 to 130573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,179 DEBUG Processing 756/825 atomic regions from SNP 226590 to 227190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,387 DEBUG Processing 533/724 atomic regions from SNP 159749 to 160349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,404 DEBUG Processing 494/708 atomic regions from SNP 148185 to 148785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,422 DEBUG Processing 435/686 atomic regions from SNP 130273 to 130873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,431 DEBUG Processing 757/825 atomic regions from SNP 226890 to 227490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,637 DEBUG Processing 534/724 atomic regions from SNP 160049 to 160649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,640 DEBUG Processing 495/708 atomic regions from SNP 148485 to 149085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,678 DEBUG Processing 436/686 atomic regions from SNP 130573 to 131173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,693 DEBUG Processing 758/825 atomic regions from SNP 227190 to 227790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,871 DEBUG Processing 496/708 atomic regions from SNP 148785 to 149385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,895 DEBUG Processing 535/724 atomic regions from SNP 160349 to 160949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,929 DEBUG Processing 437/686 atomic regions from SNP 130873 to 131473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,947 DEBUG Processing 759/825 atomic regions from SNP 227490 to 228090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,096 DEBUG Processing 497/708 atomic regions from SNP 149085 to 149685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,139 DEBUG Processing 536/724 atomic regions from SNP 160649 to 161249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,174 DEBUG Processing 438/686 atomic regions from SNP 131173 to 131773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,193 DEBUG Processing 760/825 atomic regions from SNP 227790 to 228390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,324 DEBUG Processing 498/708 atomic regions from SNP 149385 to 149985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,375 DEBUG Processing 537/724 atomic regions from SNP 160949 to 161549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,410 DEBUG Processing 439/686 atomic regions from SNP 131473 to 132073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,441 DEBUG Processing 761/825 atomic regions from SNP 228090 to 228690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,564 DEBUG Processing 499/708 atomic regions from SNP 149685 to 150285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,612 DEBUG Processing 538/724 atomic regions from SNP 161249 to 161849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,648 DEBUG Processing 440/686 atomic regions from SNP 131773 to 132373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,690 DEBUG Processing 762/825 atomic regions from SNP 228390 to 228990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,791 DEBUG Processing 500/708 atomic regions from SNP 149985 to 150585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,850 DEBUG Processing 539/724 atomic regions from SNP 161549 to 162149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,888 DEBUG Processing 441/686 atomic regions from SNP 132073 to 132673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,943 DEBUG Processing 763/825 atomic regions from SNP 228690 to 229290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,052 DEBUG Processing 501/708 atomic regions from SNP 150285 to 150885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,111 DEBUG Processing 540/724 atomic regions from SNP 161849 to 162449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,136 DEBUG Processing 442/686 atomic regions from SNP 132373 to 132973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,198 DEBUG Processing 764/825 atomic regions from SNP 228990 to 229590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,300 DEBUG Processing 502/708 atomic regions from SNP 150585 to 151185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,355 DEBUG Processing 541/724 atomic regions from SNP 162149 to 162749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,377 DEBUG Processing 443/686 atomic regions from SNP 132673 to 133273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,443 DEBUG Processing 765/825 atomic regions from SNP 229290 to 229890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,537 DEBUG Processing 503/708 atomic regions from SNP 150885 to 151485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,596 DEBUG Processing 542/724 atomic regions from SNP 162449 to 163049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,612 DEBUG Processing 444/686 atomic regions from SNP 132973 to 133573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,692 DEBUG Processing 766/825 atomic regions from SNP 229590 to 230190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,776 DEBUG Processing 504/708 atomic regions from SNP 151185 to 151785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,837 DEBUG Processing 543/724 atomic regions from SNP 162749 to 163349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,852 DEBUG Processing 445/686 atomic regions from SNP 133273 to 133873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,940 DEBUG Processing 767/825 atomic regions from SNP 229890 to 230490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,030 DEBUG Processing 505/708 atomic regions from SNP 151485 to 152085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,083 DEBUG Processing 544/724 atomic regions from SNP 163049 to 163649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,096 DEBUG Processing 446/686 atomic regions from SNP 133573 to 134173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,190 DEBUG Processing 768/825 atomic regions from SNP 230190 to 230790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,295 DEBUG Processing 506/708 atomic regions from SNP 151785 to 152385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,327 DEBUG Processing 545/724 atomic regions from SNP 163349 to 163949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,342 DEBUG Processing 447/686 atomic regions from SNP 133873 to 134473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,444 DEBUG Processing 769/825 atomic regions from SNP 230490 to 231090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,538 DEBUG Processing 507/708 atomic regions from SNP 152085 to 152685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,579 DEBUG Processing 546/724 atomic regions from SNP 163649 to 164249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,591 DEBUG Processing 448/686 atomic regions from SNP 134173 to 134773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,695 DEBUG Processing 770/825 atomic regions from SNP 230790 to 231390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,785 DEBUG Processing 508/708 atomic regions from SNP 152385 to 152985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,848 DEBUG Processing 449/686 atomic regions from SNP 134473 to 135073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,856 DEBUG Processing 547/724 atomic regions from SNP 163949 to 164549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,936 DEBUG Processing 771/825 atomic regions from SNP 231090 to 231690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,032 DEBUG Processing 509/708 atomic regions from SNP 152685 to 153285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,099 DEBUG Processing 450/686 atomic regions from SNP 134773 to 135373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,106 DEBUG Processing 548/724 atomic regions from SNP 164249 to 164849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,145 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:49:25,180 DEBUG Processing 772/825 atomic regions from SNP 231390 to 231990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,264 DEBUG Processing 510/708 atomic regions from SNP 152985 to 153585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,349 DEBUG Processing 451/686 atomic regions from SNP 135073 to 135673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,358 DEBUG Processing 549/724 atomic regions from SNP 164549 to 165149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,427 DEBUG Processing 773/825 atomic regions from SNP 231690 to 232290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,526 DEBUG Processing 511/708 atomic regions from SNP 153285 to 153885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,603 DEBUG Processing 452/686 atomic regions from SNP 135373 to 135973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,607 DEBUG Processing 550/724 atomic regions from SNP 164849 to 165449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,675 DEBUG Processing 774/825 atomic regions from SNP 231990 to 232590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,781 DEBUG Processing 512/708 atomic regions from SNP 153585 to 154185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,851 DEBUG Processing 453/686 atomic regions from SNP 135673 to 136273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,859 DEBUG Processing 551/724 atomic regions from SNP 165149 to 165749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,920 DEBUG Processing 775/825 atomic regions from SNP 232290 to 232890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,010 DEBUG Processing 513/708 atomic regions from SNP 153885 to 154485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,096 DEBUG Processing 454/686 atomic regions from SNP 135973 to 136573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,107 DEBUG Processing 552/724 atomic regions from SNP 165449 to 166049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,174 DEBUG Processing 776/825 atomic regions from SNP 232590 to 233190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,241 DEBUG Processing 514/708 atomic regions from SNP 154185 to 154785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,339 DEBUG Processing 455/686 atomic regions from SNP 136273 to 136873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,352 DEBUG Processing 553/724 atomic regions from SNP 165749 to 166349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,431 DEBUG Processing 777/825 atomic regions from SNP 232890 to 233490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,475 DEBUG Processing 515/708 atomic regions from SNP 154485 to 155085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,586 DEBUG Processing 456/686 atomic regions from SNP 136573 to 137173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,601 DEBUG Processing 554/724 atomic regions from SNP 166049 to 166649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,688 DEBUG Processing 778/825 atomic regions from SNP 233190 to 233790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,712 DEBUG Processing 516/708 atomic regions from SNP 154785 to 155385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,826 DEBUG Processing 457/686 atomic regions from SNP 136873 to 137473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,844 DEBUG Processing 555/724 atomic regions from SNP 166349 to 166949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,940 DEBUG Processing 779/825 atomic regions from SNP 233490 to 234090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,949 DEBUG Processing 517/708 atomic regions from SNP 155085 to 155685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,069 DEBUG Processing 458/686 atomic regions from SNP 137173 to 137773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,091 DEBUG Processing 556/724 atomic regions from SNP 166649 to 167249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,186 DEBUG Processing 518/708 atomic regions from SNP 155385 to 155985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,193 DEBUG Processing 780/825 atomic regions from SNP 233790 to 234390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,311 DEBUG Processing 459/686 atomic regions from SNP 137473 to 138073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,335 DEBUG Processing 557/724 atomic regions from SNP 166949 to 167549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,420 DEBUG Processing 519/708 atomic regions from SNP 155685 to 156285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,445 DEBUG Processing 781/825 atomic regions from SNP 234090 to 234690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,555 DEBUG Processing 460/686 atomic regions from SNP 137773 to 138373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,578 DEBUG Processing 558/724 atomic regions from SNP 167249 to 167849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,656 DEBUG Processing 520/708 atomic regions from SNP 155985 to 156585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,693 DEBUG Processing 782/825 atomic regions from SNP 234390 to 234990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,798 DEBUG Processing 461/686 atomic regions from SNP 138073 to 138673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,823 DEBUG Processing 559/724 atomic regions from SNP 167549 to 168149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,889 DEBUG Processing 521/708 atomic regions from SNP 156285 to 156885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,945 DEBUG Processing 783/825 atomic regions from SNP 234690 to 235290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,046 DEBUG Processing 462/686 atomic regions from SNP 138373 to 138973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,070 DEBUG Processing 560/724 atomic regions from SNP 167849 to 168449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,132 DEBUG Processing 522/708 atomic regions from SNP 156585 to 157185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,206 DEBUG Processing 784/825 atomic regions from SNP 234990 to 235590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,293 DEBUG Processing 463/686 atomic regions from SNP 138673 to 139273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,318 DEBUG Processing 561/724 atomic regions from SNP 168149 to 168749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,362 DEBUG Processing 523/708 atomic regions from SNP 156885 to 157485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,389 DEBUG Segmenting atomic regions: 2025-01-31 09:49:28,458 DEBUG Processing 785/825 atomic regions from SNP 235290 to 235890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,478 DEBUG Processing 1/637 atomic regions from SNP 0 to 601 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,543 DEBUG Processing 464/686 atomic regions from SNP 138973 to 139573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,570 DEBUG Processing 562/724 atomic regions from SNP 168449 to 169049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,589 DEBUG Processing 524/708 atomic regions from SNP 157185 to 157785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,708 DEBUG Processing 2/637 atomic regions from SNP 301 to 902 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,714 DEBUG Processing 786/825 atomic regions from SNP 235590 to 236190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,818 DEBUG Processing 525/708 atomic regions from SNP 157485 to 158085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,820 DEBUG Processing 563/724 atomic regions from SNP 168749 to 169349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,821 DEBUG Processing 465/686 atomic regions from SNP 139273 to 139873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,935 DEBUG Processing 3/637 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:28,966 DEBUG Processing 787/825 atomic regions from SNP 235890 to 236490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,057 DEBUG Processing 526/708 atomic regions from SNP 157785 to 158385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,066 DEBUG Processing 466/686 atomic regions from SNP 139573 to 140173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,073 DEBUG Processing 564/724 atomic regions from SNP 169049 to 169649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,172 DEBUG Processing 4/637 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,239 DEBUG Processing 788/825 atomic regions from SNP 236190 to 236790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,306 DEBUG Processing 527/708 atomic regions from SNP 158085 to 158685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,317 DEBUG Processing 467/686 atomic regions from SNP 139873 to 140473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,321 DEBUG Processing 565/724 atomic regions from SNP 169349 to 169949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,432 DEBUG Processing 5/637 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,511 DEBUG Processing 789/825 atomic regions from SNP 236490 to 237090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,606 DEBUG Processing 528/708 atomic regions from SNP 158385 to 158985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,631 DEBUG Processing 468/686 atomic regions from SNP 140173 to 140773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,631 DEBUG Processing 566/724 atomic regions from SNP 169649 to 170249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,675 DEBUG Processing 6/637 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:29,760 DEBUG Processing 790/825 atomic regions from SNP 236790 to 237390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,842 DEBUG Processing 529/708 atomic regions from SNP 158685 to 159285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,887 DEBUG Processing 567/724 atomic regions from SNP 169949 to 170549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,902 DEBUG Processing 469/686 atomic regions from SNP 140473 to 141073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,911 DEBUG Processing 7/637 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,005 DEBUG Processing 791/825 atomic regions from SNP 237090 to 237690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,068 DEBUG Processing 530/708 atomic regions from SNP 158985 to 159585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,137 DEBUG Processing 568/724 atomic regions from SNP 170249 to 170849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,147 DEBUG Processing 8/637 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,165 DEBUG Processing 470/686 atomic regions from SNP 140773 to 141373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,258 DEBUG Processing 792/825 atomic regions from SNP 237390 to 237990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,293 DEBUG Processing 531/708 atomic regions from SNP 159285 to 159885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,380 DEBUG Processing 9/637 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,380 DEBUG Processing 569/724 atomic regions from SNP 170549 to 171149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,431 DEBUG Processing 471/686 atomic regions from SNP 141073 to 141673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,516 DEBUG Processing 793/825 atomic regions from SNP 237690 to 238290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,529 DEBUG Processing 532/708 atomic regions from SNP 159585 to 160185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,614 DEBUG Processing 10/637 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,629 DEBUG Processing 570/724 atomic regions from SNP 170849 to 171449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,685 DEBUG Processing 472/686 atomic regions from SNP 141373 to 141973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,769 DEBUG Processing 533/708 atomic regions from SNP 159885 to 160485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,775 DEBUG Processing 794/825 atomic regions from SNP 237990 to 238590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,871 DEBUG Processing 11/637 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:30,900 DEBUG Processing 571/724 atomic regions from SNP 171149 to 171749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,992 DEBUG Processing 473/686 atomic regions from SNP 141673 to 142273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,051 DEBUG Processing 534/708 atomic regions from SNP 160185 to 160785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,076 DEBUG Processing 795/825 atomic regions from SNP 238290 to 238890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,157 DEBUG Processing 12/637 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:31,197 DEBUG Processing 572/724 atomic regions from SNP 171449 to 172049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,326 DEBUG Processing 474/686 atomic regions from SNP 141973 to 142573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,370 DEBUG Processing 535/708 atomic regions from SNP 160485 to 161085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,404 DEBUG Processing 796/825 atomic regions from SNP 238590 to 239190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,414 DEBUG Processing 13/637 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:31,458 DEBUG Processing 573/724 atomic regions from SNP 171749 to 172349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,646 DEBUG Processing 475/686 atomic regions from SNP 142273 to 142873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,706 DEBUG Processing 536/708 atomic regions from SNP 160785 to 161385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,752 DEBUG Processing 14/637 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:31,777 DEBUG Processing 797/825 atomic regions from SNP 238890 to 239490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,804 DEBUG Processing 574/724 atomic regions from SNP 172049 to 172649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,961 DEBUG Processing 476/686 atomic regions from SNP 142573 to 143173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,021 DEBUG Processing 537/708 atomic regions from SNP 161085 to 161685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,093 DEBUG Processing 15/637 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:32,113 DEBUG Processing 798/825 atomic regions from SNP 239190 to 239790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,119 DEBUG Processing 575/724 atomic regions from SNP 172349 to 172949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,233 DEBUG Processing 477/686 atomic regions from SNP 142873 to 143473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,256 DEBUG Processing 538/708 atomic regions from SNP 161385 to 161985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,337 DEBUG Processing 16/637 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:32,380 DEBUG Processing 799/825 atomic regions from SNP 239490 to 240090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,389 DEBUG Processing 576/724 atomic regions from SNP 172649 to 173249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,479 DEBUG Processing 478/686 atomic regions from SNP 143173 to 143773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,488 DEBUG Processing 539/708 atomic regions from SNP 161685 to 162285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,568 DEBUG Processing 17/637 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:32,629 DEBUG Processing 800/825 atomic regions from SNP 239790 to 240390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,642 DEBUG Processing 577/724 atomic regions from SNP 172949 to 173549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,723 DEBUG Processing 479/686 atomic regions from SNP 143473 to 144073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,726 DEBUG Processing 540/708 atomic regions from SNP 161985 to 162585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,795 DEBUG Processing 18/637 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:32,876 DEBUG Processing 801/825 atomic regions from SNP 240090 to 240690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,900 DEBUG Processing 578/724 atomic regions from SNP 173249 to 173849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,973 DEBUG Processing 541/708 atomic regions from SNP 162285 to 162885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,974 DEBUG Processing 480/686 atomic regions from SNP 143773 to 144373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,022 DEBUG Processing 19/637 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:33,126 DEBUG Processing 802/825 atomic regions from SNP 240390 to 240990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,147 DEBUG Processing 579/724 atomic regions from SNP 173549 to 174149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,221 DEBUG Processing 542/708 atomic regions from SNP 162585 to 163185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,231 DEBUG Processing 481/686 atomic regions from SNP 144073 to 144673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,250 DEBUG Processing 20/637 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:33,381 DEBUG Processing 803/825 atomic regions from SNP 240690 to 241290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,395 DEBUG Processing 580/724 atomic regions from SNP 173849 to 174449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,461 DEBUG Processing 543/708 atomic regions from SNP 162885 to 163485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,476 DEBUG Processing 482/686 atomic regions from SNP 144373 to 144973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,480 DEBUG Processing 21/637 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:33,636 DEBUG Processing 804/825 atomic regions from SNP 240990 to 241590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,647 DEBUG Processing 581/724 atomic regions from SNP 174149 to 174749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,712 DEBUG Processing 544/708 atomic regions from SNP 163185 to 163785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,719 DEBUG Processing 22/637 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:33,733 DEBUG Processing 483/686 atomic regions from SNP 144673 to 145273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,888 DEBUG Processing 805/825 atomic regions from SNP 241290 to 241890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,899 DEBUG Processing 582/724 atomic regions from SNP 174449 to 175049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,959 DEBUG Processing 545/708 atomic regions from SNP 163485 to 164085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,966 DEBUG Processing 23/637 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:33,987 DEBUG Processing 484/686 atomic regions from SNP 144973 to 145573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,137 DEBUG Processing 806/825 atomic regions from SNP 241590 to 242190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,144 DEBUG Processing 583/724 atomic regions from SNP 174749 to 175349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,203 DEBUG Processing 546/708 atomic regions from SNP 163785 to 164385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,208 DEBUG Processing 24/637 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:34,239 DEBUG Processing 485/686 atomic regions from SNP 145273 to 145873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,380 DEBUG Processing 807/825 atomic regions from SNP 241890 to 242490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,385 DEBUG Processing 584/724 atomic regions from SNP 175049 to 175649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,435 DEBUG Processing 547/708 atomic regions from SNP 164085 to 164685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,442 DEBUG Processing 25/637 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:34,487 DEBUG Processing 486/686 atomic regions from SNP 145573 to 146173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,626 DEBUG Processing 808/825 atomic regions from SNP 242190 to 242790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,628 DEBUG Processing 585/724 atomic regions from SNP 175349 to 175949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,667 DEBUG Processing 548/708 atomic regions from SNP 164385 to 164985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,676 DEBUG Processing 26/637 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:34,738 DEBUG Processing 487/686 atomic regions from SNP 145873 to 146473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,876 DEBUG Processing 586/724 atomic regions from SNP 175649 to 176249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,900 DEBUG Processing 809/825 atomic regions from SNP 242490 to 243090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,904 DEBUG Processing 549/708 atomic regions from SNP 164685 to 165285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,909 DEBUG Processing 27/637 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:34,982 DEBUG Processing 488/686 atomic regions from SNP 146173 to 146773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,123 DEBUG Processing 587/724 atomic regions from SNP 175949 to 176549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,136 DEBUG Processing 550/708 atomic regions from SNP 164985 to 165585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,143 DEBUG Processing 28/637 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:35,155 DEBUG Processing 810/825 atomic regions from SNP 242790 to 243390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,229 DEBUG Processing 489/686 atomic regions from SNP 146473 to 147073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,369 DEBUG Processing 551/708 atomic regions from SNP 165285 to 165885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,370 DEBUG Processing 588/724 atomic regions from SNP 176249 to 176849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,373 DEBUG Processing 29/637 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:35,403 DEBUG Processing 811/825 atomic regions from SNP 243090 to 243690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,476 DEBUG Processing 490/686 atomic regions from SNP 146773 to 147373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,605 DEBUG Processing 552/708 atomic regions from SNP 165585 to 166185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,607 DEBUG Processing 30/637 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:35,617 DEBUG Processing 589/724 atomic regions from SNP 176549 to 177149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,648 DEBUG Processing 812/825 atomic regions from SNP 243390 to 243990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,720 DEBUG Processing 491/686 atomic regions from SNP 147073 to 147673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,839 DEBUG Processing 553/708 atomic regions from SNP 165885 to 166485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,839 DEBUG Processing 31/637 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:35,865 DEBUG Processing 590/724 atomic regions from SNP 176849 to 177449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,891 DEBUG Processing 813/825 atomic regions from SNP 243690 to 244290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,954 DEBUG Processing 492/686 atomic regions from SNP 147373 to 147973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,072 DEBUG Processing 32/637 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:36,072 DEBUG Processing 554/708 atomic regions from SNP 166185 to 166785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,113 DEBUG Processing 591/724 atomic regions from SNP 177149 to 177749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,136 DEBUG Processing 814/825 atomic regions from SNP 243990 to 244590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,192 DEBUG Processing 493/686 atomic regions from SNP 147673 to 148273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,302 DEBUG Processing 555/708 atomic regions from SNP 166485 to 167085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,304 DEBUG Processing 33/637 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:36,363 DEBUG Processing 592/724 atomic regions from SNP 177449 to 178049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,382 DEBUG Processing 815/825 atomic regions from SNP 244290 to 244890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,434 DEBUG Processing 494/686 atomic regions from SNP 147973 to 148573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,532 DEBUG Processing 556/708 atomic regions from SNP 166785 to 167385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,538 DEBUG Processing 34/637 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:36,615 DEBUG Processing 593/724 atomic regions from SNP 177749 to 178349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,628 DEBUG Processing 816/825 atomic regions from SNP 244590 to 245190 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,683 DEBUG Processing 495/686 atomic regions from SNP 148273 to 148873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,762 DEBUG Processing 557/708 atomic regions from SNP 167085 to 167685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,772 DEBUG Processing 35/637 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:36,863 DEBUG Processing 594/724 atomic regions from SNP 178049 to 178649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,872 DEBUG Processing 817/825 atomic regions from SNP 244890 to 245490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,931 DEBUG Processing 496/686 atomic regions from SNP 148573 to 149173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,999 DEBUG Processing 558/708 atomic regions from SNP 167385 to 167985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,008 DEBUG Processing 36/637 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:37,116 DEBUG Processing 595/724 atomic regions from SNP 178349 to 178949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,121 DEBUG Processing 818/825 atomic regions from SNP 245190 to 245790 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,181 DEBUG Processing 497/686 atomic regions from SNP 148873 to 149473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,250 DEBUG Processing 37/637 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:37,273 DEBUG Processing 559/708 atomic regions from SNP 167685 to 168285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,374 DEBUG Processing 596/724 atomic regions from SNP 178649 to 179249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,382 DEBUG Processing 819/825 atomic regions from SNP 245490 to 246090 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,430 DEBUG Processing 498/686 atomic regions from SNP 149173 to 149773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,486 DEBUG Processing 38/637 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:37,506 DEBUG Processing 560/708 atomic regions from SNP 167985 to 168585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,629 DEBUG Processing 820/825 atomic regions from SNP 245790 to 246390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,630 DEBUG Processing 597/724 atomic regions from SNP 178949 to 179549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,682 DEBUG Processing 499/686 atomic regions from SNP 149473 to 150073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,720 DEBUG Processing 39/637 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:37,737 DEBUG Processing 561/708 atomic regions from SNP 168285 to 168885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,879 DEBUG Processing 821/825 atomic regions from SNP 246090 to 246690 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,884 DEBUG Processing 598/724 atomic regions from SNP 179249 to 179849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,938 DEBUG Processing 500/686 atomic regions from SNP 149773 to 150373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,957 DEBUG Processing 40/637 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:37,978 DEBUG Processing 562/708 atomic regions from SNP 168585 to 169185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,128 DEBUG Processing 822/825 atomic regions from SNP 246390 to 246990 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,131 DEBUG Processing 599/724 atomic regions from SNP 179549 to 180149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,195 DEBUG Processing 41/637 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:38,199 DEBUG Processing 501/686 atomic regions from SNP 150073 to 150673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,251 DEBUG Processing 563/708 atomic regions from SNP 168885 to 169485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,376 DEBUG Processing 823/825 atomic regions from SNP 246690 to 247290 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,378 DEBUG Processing 600/724 atomic regions from SNP 179849 to 180449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,432 DEBUG Processing 42/637 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:38,446 DEBUG Processing 502/686 atomic regions from SNP 150373 to 150973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,520 DEBUG Processing 564/708 atomic regions from SNP 169185 to 169785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,626 DEBUG Processing 601/724 atomic regions from SNP 180149 to 180749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,640 DEBUG Processing 824/825 atomic regions from SNP 246990 to 247590 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,669 DEBUG Processing 43/637 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:38,702 DEBUG Processing 503/686 atomic regions from SNP 150673 to 151273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,796 DEBUG Processing 565/708 atomic regions from SNP 169485 to 170085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,886 DEBUG Processing 602/724 atomic regions from SNP 180449 to 181049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,899 DEBUG Processing 825/825 atomic regions from SNP 247290 to 247890 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,915 DEBUG Processing 44/637 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:38,958 DEBUG Processing 504/686 atomic regions from SNP 150973 to 151573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,049 DEBUG Unique SNPs positions in subchromosome 1: 247891 2025-01-31 09:49:39,069 DEBUG Processing 566/708 atomic regions from SNP 169785 to 170385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,143 DEBUG Processing 603/724 atomic regions from SNP 180749 to 181349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,157 DEBUG Processing 45/637 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:39,216 DEBUG Processing 505/686 atomic regions from SNP 151273 to 151873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,339 DEBUG Processing 567/708 atomic regions from SNP 170085 to 170685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,393 DEBUG Processing 46/637 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:39,398 DEBUG Processing 604/724 atomic regions from SNP 181049 to 181649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,469 DEBUG Processing 506/686 atomic regions from SNP 151573 to 152173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,601 DEBUG Processing 568/708 atomic regions from SNP 170385 to 170985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,628 DEBUG Processing 47/637 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:39,655 DEBUG Processing 605/724 atomic regions from SNP 181349 to 181949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,748 DEBUG Processing 507/686 atomic regions from SNP 151873 to 152473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,870 DEBUG Processing 569/708 atomic regions from SNP 170685 to 171285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,873 DEBUG Processing 48/637 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:39,914 DEBUG Processing 606/724 atomic regions from SNP 181649 to 182249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,019 DEBUG Processing 508/686 atomic regions from SNP 152173 to 152773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,111 DEBUG Processing 570/708 atomic regions from SNP 170985 to 171585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,114 DEBUG Processing 49/637 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:40,168 DEBUG Processing 607/724 atomic regions from SNP 181949 to 182549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,275 DEBUG Processing 509/686 atomic regions from SNP 152473 to 153073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,350 DEBUG Processing 571/708 atomic regions from SNP 171285 to 171885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,353 DEBUG Processing 50/637 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:40,423 DEBUG Processing 608/724 atomic regions from SNP 182249 to 182849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,525 DEBUG Processing 510/686 atomic regions from SNP 152773 to 153373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,581 DEBUG Processing 572/708 atomic regions from SNP 171585 to 172185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,593 DEBUG Processing 51/637 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:40,676 DEBUG Processing 609/724 atomic regions from SNP 182549 to 183149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,773 DEBUG Processing 511/686 atomic regions from SNP 153073 to 153673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,827 DEBUG Processing 573/708 atomic regions from SNP 171885 to 172485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,831 DEBUG Processing 52/637 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:40,924 DEBUG Processing 610/724 atomic regions from SNP 182849 to 183449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,034 DEBUG Processing 512/686 atomic regions from SNP 153373 to 153973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,112 DEBUG Processing 53/637 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:41,127 DEBUG Processing 574/708 atomic regions from SNP 172185 to 172785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,251 DEBUG Processing 611/724 atomic regions from SNP 183149 to 183749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,419 DEBUG Processing 513/686 atomic regions from SNP 153673 to 154273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,473 DEBUG Processing 54/637 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:41,515 DEBUG Processing 575/708 atomic regions from SNP 172485 to 173085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,645 DEBUG Processing 612/724 atomic regions from SNP 183449 to 184049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,735 DEBUG Processing 514/686 atomic regions from SNP 153973 to 154573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,789 DEBUG Processing 55/637 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:41,839 DEBUG Processing 576/708 atomic regions from SNP 172785 to 173385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,916 DEBUG Processing 613/724 atomic regions from SNP 183749 to 184349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,032 DEBUG Processing 515/686 atomic regions from SNP 154273 to 154873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,055 DEBUG Processing 56/637 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:42,103 DEBUG Processing 577/708 atomic regions from SNP 173085 to 173685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,202 DEBUG Processing 614/724 atomic regions from SNP 184049 to 184649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,290 DEBUG Processing 516/686 atomic regions from SNP 154573 to 155173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,297 DEBUG Processing 57/637 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:42,343 DEBUG Processing 578/708 atomic regions from SNP 173385 to 173985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,461 DEBUG Processing 615/724 atomic regions from SNP 184349 to 184949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,575 DEBUG Processing 58/637 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:42,585 DEBUG Processing 517/686 atomic regions from SNP 154873 to 155473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,607 DEBUG Processing 579/708 atomic regions from SNP 173685 to 174285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,751 DEBUG Processing 616/724 atomic regions from SNP 184649 to 185249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,841 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:49:42,843 DEBUG chr9: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:49:42,864 DEBUG Processing 59/637 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:42,888 DEBUG Processing 518/686 atomic regions from SNP 155173 to 155773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,890 DEBUG Processing 580/708 atomic regions from SNP 173985 to 174585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,002 DEBUG Processing 617/724 atomic regions from SNP 184949 to 185549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,104 DEBUG Processing 60/637 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:43,139 DEBUG Processing 581/708 atomic regions from SNP 174285 to 174885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,145 DEBUG Processing 519/686 atomic regions from SNP 155473 to 156073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,265 DEBUG Processing 618/724 atomic regions from SNP 185249 to 185849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,395 DEBUG Processing 61/637 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:43,428 DEBUG Processing 582/708 atomic regions from SNP 174585 to 175185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,436 DEBUG Processing 520/686 atomic regions from SNP 155773 to 156373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,588 DEBUG Processing 619/724 atomic regions from SNP 185549 to 186149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,697 DEBUG Processing 583/708 atomic regions from SNP 174885 to 175485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,701 DEBUG Processing 62/637 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:43,718 DEBUG Processing 521/686 atomic regions from SNP 156073 to 156673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,839 DEBUG Processing 620/724 atomic regions from SNP 185849 to 186449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,973 DEBUG Processing 584/708 atomic regions from SNP 175185 to 175785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,997 DEBUG Processing 63/637 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:43,999 DEBUG Processing 522/686 atomic regions from SNP 156373 to 156973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,116 DEBUG Processing 621/724 atomic regions from SNP 186149 to 186749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,216 DEBUG Processing 585/708 atomic regions from SNP 175485 to 176085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,231 DEBUG Processing 64/637 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:44,248 DEBUG Processing 523/686 atomic regions from SNP 156673 to 157273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,361 DEBUG Processing 622/724 atomic regions from SNP 186449 to 187049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,459 DEBUG Processing 586/708 atomic regions from SNP 175785 to 176385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,466 DEBUG Processing 65/637 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:44,506 DEBUG Processing 524/686 atomic regions from SNP 156973 to 157573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,611 DEBUG Processing 623/724 atomic regions from SNP 186749 to 187349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,702 DEBUG Processing 66/637 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:44,706 DEBUG Processing 587/708 atomic regions from SNP 176085 to 176685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,759 DEBUG Processing 525/686 atomic regions from SNP 157273 to 157873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,859 DEBUG Processing 624/724 atomic regions from SNP 187049 to 187649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,937 DEBUG Processing 67/637 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:44,944 DEBUG Processing 588/708 atomic regions from SNP 176385 to 176985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,012 DEBUG Processing 526/686 atomic regions from SNP 157573 to 158173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,113 DEBUG Processing 625/724 atomic regions from SNP 187349 to 187949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,169 DEBUG Processing 68/637 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:45,181 DEBUG Processing 589/708 atomic regions from SNP 176685 to 177285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,264 DEBUG Processing 527/686 atomic regions from SNP 157873 to 158473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,357 DEBUG Processing 626/724 atomic regions from SNP 187649 to 188249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,401 DEBUG Processing 69/637 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:45,430 DEBUG Processing 590/708 atomic regions from SNP 176985 to 177585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,517 DEBUG Processing 528/686 atomic regions from SNP 158173 to 158773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,556 DEBUG chr9 total SNP count: 213304 2025-01-31 09:49:45,557 DEBUG chr9 length: 124595110 2025-01-31 09:49:45,557 DEBUG ----------------------------------------- 2025-01-31 09:49:45,557 INFO Processing SNPs in chr9 2025-01-31 09:49:45,609 DEBUG Processing 627/724 atomic regions from SNP 187949 to 188549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,661 DEBUG Processing 70/637 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:45,665 DEBUG Processing 591/708 atomic regions from SNP 177285 to 177885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,767 DEBUG Processing 529/686 atomic regions from SNP 158473 to 159073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,777 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 213304)] 2025-01-31 09:49:45,862 DEBUG Processing 628/724 atomic regions from SNP 188249 to 188849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,897 DEBUG Processing 592/708 atomic regions from SNP 177585 to 178185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,901 DEBUG Processing 71/637 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:45,928 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:46,011 DEBUG Processing 530/686 atomic regions from SNP 158773 to 159373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,038 DEBUG Subchromosome time: 251.51008293032646, subchromosome SNPs: 247891 2025-01-31 09:49:46,038 DEBUG Estimated BADs: [1.61, 0.81, 3.22, 0.81, 6.45, 1.61, 0.81, 3.22, 1.61, 0.81, 9.67, 0.81, 4.84, 1.61, 0.27, 0.81, 4.84, 1.61, 0.81, 9.67, 3.22, 16.12, 3.22, 0.81, 8.06, 1.61] SNP counts: [10608, 30067, 13082, 4423, 2905, 8085, 5326, 6859, 11036, 14718, 188, 5110, 3352, 3213, 6293, 7199, 14832, 11082, 26352, 1482, 18918, 1154, 9276, 5820, 751, 25760] SNP IDs counts: [10608, 30067, 13082, 4423, 2905, 8085, 5326, 6859, 11036, 14718, 188, 5110, 3352, 3213, 6293, 7199, 14832, 11082, 26352, 1482, 18918, 1154, 9276, 5820, 751, 25760] Critical gap: 676123bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.31Mbp, 28.20Mbp, 35.24Mbp, 37.84Mbp, 39.37Mbp, 44.23Mbp, 47.59Mbp, 51.50Mbp, 57.67Mbp, 67.00Mbp, 67.10Mbp, 70.71Mbp, 72.49Mbp, 74.37Mbp, 78.55Mbp, 82.99Mbp, 91.10Mbp, 97.14Mbp, 112.89Mbp, 113.66Mbp, 124.66Mbp, 125.27Mbp, 130.54Mbp, 134.77Mbp, 135.17Mbp, 149.74Mbp] 2025-01-31 09:49:46,039 DEBUG chr6 time: 251.51062758639455 s 2025-01-31 09:49:46,111 DEBUG Processing 629/724 atomic regions from SNP 188549 to 189149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,132 DEBUG Processing 593/708 atomic regions from SNP 177885 to 178485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,155 DEBUG Processing 72/637 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:46,192 DEBUG chr6: Fitting background model for 26 segments 2025-01-31 09:49:46,254 DEBUG Processing 531/686 atomic regions from SNP 159073 to 159673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,362 DEBUG Processing 630/724 atomic regions from SNP 188849 to 189449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,364 DEBUG Processing 594/708 atomic regions from SNP 178185 to 178785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,412 DEBUG Processing 73/637 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:46,497 DEBUG Processing 532/686 atomic regions from SNP 159373 to 159973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,599 DEBUG Processing 595/708 atomic regions from SNP 178485 to 179085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,607 DEBUG Processing 631/724 atomic regions from SNP 189149 to 189749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,684 DEBUG Processing 74/637 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:46,749 DEBUG Processing 533/686 atomic regions from SNP 159673 to 160273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,838 DEBUG Processing 596/708 atomic regions from SNP 178785 to 179385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,854 DEBUG Processing 632/724 atomic regions from SNP 189449 to 190049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,936 DEBUG Processing 75/637 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:46,998 DEBUG Processing 534/686 atomic regions from SNP 159973 to 160573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,081 DEBUG Processing 597/708 atomic regions from SNP 179085 to 179685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,102 DEBUG Processing 633/724 atomic regions from SNP 189749 to 190349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,201 DEBUG Processing 76/637 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:47,247 DEBUG Processing 535/686 atomic regions from SNP 160273 to 160873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,339 DEBUG Processing 598/708 atomic regions from SNP 179385 to 179985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,348 DEBUG Processing 634/724 atomic regions from SNP 190049 to 190649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,466 DEBUG Processing 77/637 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:47,501 DEBUG Processing 536/686 atomic regions from SNP 160573 to 161173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,595 DEBUG Processing 635/724 atomic regions from SNP 190349 to 190949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,603 DEBUG Processing 599/708 atomic regions from SNP 179685 to 180285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,732 DEBUG Processing 78/637 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:47,782 DEBUG Processing 537/686 atomic regions from SNP 160873 to 161473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,852 DEBUG Processing 636/724 atomic regions from SNP 190649 to 191249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,865 DEBUG Processing 600/708 atomic regions from SNP 179985 to 180585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,961 DEBUG Processing 79/637 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:48,042 DEBUG Processing 538/686 atomic regions from SNP 161173 to 161773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,099 DEBUG Processing 637/724 atomic regions from SNP 190949 to 191549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,131 DEBUG Processing 601/708 atomic regions from SNP 180285 to 180885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,183 DEBUG Processing 80/637 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:48,286 DEBUG Processing 539/686 atomic regions from SNP 161473 to 162073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,346 DEBUG Processing 638/724 atomic regions from SNP 191249 to 191849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,405 DEBUG Processing 602/708 atomic regions from SNP 180585 to 181185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,441 DEBUG Processing 81/637 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:48,525 DEBUG Processing 540/686 atomic regions from SNP 161773 to 162373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,588 DEBUG Processing 639/724 atomic regions from SNP 191549 to 192149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,662 DEBUG Processing 603/708 atomic regions from SNP 180885 to 181485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,687 DEBUG Processing 82/637 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:48,764 DEBUG Processing 541/686 atomic regions from SNP 162073 to 162673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,827 DEBUG Processing 640/724 atomic regions from SNP 191849 to 192449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,934 DEBUG Processing 604/708 atomic regions from SNP 181185 to 181785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,943 DEBUG Processing 83/637 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:49,004 DEBUG Processing 542/686 atomic regions from SNP 162373 to 162973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,069 DEBUG Processing 641/724 atomic regions from SNP 192149 to 192749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,175 DEBUG Processing 84/637 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:49,197 DEBUG Processing 605/708 atomic regions from SNP 181485 to 182085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,242 DEBUG Processing 543/686 atomic regions from SNP 162673 to 163273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,306 DEBUG Processing 642/724 atomic regions from SNP 192449 to 193049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,399 DEBUG Processing 85/637 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:49,441 DEBUG Processing 606/708 atomic regions from SNP 181785 to 182385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,487 DEBUG Processing 544/686 atomic regions from SNP 162973 to 163573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,549 DEBUG Processing 643/724 atomic regions from SNP 192749 to 193349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,632 DEBUG Processing 86/637 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:49,687 DEBUG Processing 607/708 atomic regions from SNP 182085 to 182685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,738 DEBUG Processing 545/686 atomic regions from SNP 163273 to 163873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,792 DEBUG Processing 644/724 atomic regions from SNP 193049 to 193649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,856 DEBUG Processing 87/637 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:49,929 DEBUG Processing 608/708 atomic regions from SNP 182385 to 182985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,980 DEBUG Processing 546/686 atomic regions from SNP 163573 to 164173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,037 DEBUG Processing 645/724 atomic regions from SNP 193349 to 193949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,084 DEBUG Processing 88/637 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:50,176 DEBUG Processing 609/708 atomic regions from SNP 182685 to 183285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,223 DEBUG Processing 547/686 atomic regions from SNP 163873 to 164473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,283 DEBUG Processing 646/724 atomic regions from SNP 193649 to 194249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,312 DEBUG Processing 89/637 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:50,425 DEBUG Processing 610/708 atomic regions from SNP 182985 to 183585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,465 DEBUG Processing 548/686 atomic regions from SNP 164173 to 164773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,536 DEBUG Processing 90/637 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:50,552 DEBUG Processing 647/724 atomic regions from SNP 193949 to 194549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,676 DEBUG Processing 611/708 atomic regions from SNP 183285 to 183885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,715 DEBUG Processing 549/686 atomic regions from SNP 164473 to 165073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,769 DEBUG Processing 91/637 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:50,808 DEBUG Processing 648/724 atomic regions from SNP 194249 to 194849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,920 DEBUG Processing 612/708 atomic regions from SNP 183585 to 184185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,952 DEBUG Processing 550/686 atomic regions from SNP 164773 to 165373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,999 DEBUG Processing 92/637 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:51,054 DEBUG Processing 649/724 atomic regions from SNP 194549 to 195149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,155 DEBUG Processing 613/708 atomic regions from SNP 183885 to 184485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,187 DEBUG Processing 551/686 atomic regions from SNP 165073 to 165673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,220 DEBUG Processing 93/637 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:51,299 DEBUG Processing 650/724 atomic regions from SNP 194849 to 195449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,389 DEBUG Processing 614/708 atomic regions from SNP 184185 to 184785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,428 DEBUG Processing 552/686 atomic regions from SNP 165373 to 165973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,444 DEBUG Processing 94/637 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:51,565 DEBUG Processing 651/724 atomic regions from SNP 195149 to 195749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,622 DEBUG Processing 615/708 atomic regions from SNP 184485 to 185085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,667 DEBUG Processing 95/637 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:51,684 DEBUG Processing 553/686 atomic regions from SNP 165673 to 166273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,808 DEBUG Processing 652/724 atomic regions from SNP 195449 to 196049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,855 DEBUG Processing 616/708 atomic regions from SNP 184785 to 185385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,888 DEBUG Processing 96/637 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:51,923 DEBUG Processing 554/686 atomic regions from SNP 165973 to 166573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,055 DEBUG Processing 653/724 atomic regions from SNP 195749 to 196349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,091 DEBUG Processing 617/708 atomic regions from SNP 185085 to 185685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,112 DEBUG Processing 97/637 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:52,160 DEBUG Processing 555/686 atomic regions from SNP 166273 to 166873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,306 DEBUG Processing 654/724 atomic regions from SNP 196049 to 196649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,327 DEBUG Processing 618/708 atomic regions from SNP 185385 to 185985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,347 DEBUG Processing 98/637 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:52,407 DEBUG Processing 556/686 atomic regions from SNP 166573 to 167173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,552 DEBUG Processing 655/724 atomic regions from SNP 196349 to 196949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,567 DEBUG Processing 619/708 atomic regions from SNP 185685 to 186285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,580 DEBUG Processing 99/637 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:52,655 DEBUG Processing 557/686 atomic regions from SNP 166873 to 167473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,797 DEBUG Processing 656/724 atomic regions from SNP 196649 to 197249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,806 DEBUG Processing 620/708 atomic regions from SNP 185985 to 186585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,810 DEBUG Processing 100/637 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:52,901 DEBUG Processing 558/686 atomic regions from SNP 167173 to 167773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,042 DEBUG Processing 101/637 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:53,046 DEBUG Processing 657/724 atomic regions from SNP 196949 to 197549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,048 DEBUG Processing 621/708 atomic regions from SNP 186285 to 186885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,149 DEBUG Processing 559/686 atomic regions from SNP 167473 to 168073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,285 DEBUG Processing 102/637 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:53,297 DEBUG Processing 622/708 atomic regions from SNP 186585 to 187185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,310 DEBUG Processing 658/724 atomic regions from SNP 197249 to 197849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,394 DEBUG Processing 560/686 atomic regions from SNP 167773 to 168373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,520 DEBUG Processing 103/637 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:53,542 DEBUG Processing 623/708 atomic regions from SNP 186885 to 187485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,586 DEBUG Processing 659/724 atomic regions from SNP 197549 to 198149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,640 DEBUG Processing 561/686 atomic regions from SNP 168073 to 168673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,749 DEBUG Processing 104/637 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:53,782 DEBUG Processing 624/708 atomic regions from SNP 187185 to 187785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,848 DEBUG Processing 660/724 atomic regions from SNP 197849 to 198449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,887 DEBUG Processing 562/686 atomic regions from SNP 168373 to 168973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,979 DEBUG Processing 105/637 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:54,029 DEBUG Processing 625/708 atomic regions from SNP 187485 to 188085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,095 DEBUG Processing 661/724 atomic regions from SNP 198149 to 198749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,133 DEBUG Processing 563/686 atomic regions from SNP 168673 to 169273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,213 DEBUG Processing 106/637 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:54,278 DEBUG Processing 626/708 atomic regions from SNP 187785 to 188385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,346 DEBUG Processing 662/724 atomic regions from SNP 198449 to 199049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,382 DEBUG Processing 564/686 atomic regions from SNP 168973 to 169573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,443 DEBUG Processing 107/637 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:54,527 DEBUG Processing 627/708 atomic regions from SNP 188085 to 188685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,597 DEBUG Processing 663/724 atomic regions from SNP 198749 to 199349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,652 DEBUG Processing 565/686 atomic regions from SNP 169273 to 169873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,673 DEBUG Processing 108/637 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:54,768 DEBUG Processing 628/708 atomic regions from SNP 188385 to 188985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,849 DEBUG Processing 664/724 atomic regions from SNP 199049 to 199649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,914 DEBUG Processing 566/686 atomic regions from SNP 169573 to 170173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,919 DEBUG Processing 109/637 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:55,007 DEBUG Processing 629/708 atomic regions from SNP 188685 to 189285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,091 DEBUG Processing 665/724 atomic regions from SNP 199349 to 199949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,166 DEBUG Processing 567/686 atomic regions from SNP 169873 to 170473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,170 DEBUG Processing 110/637 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:55,248 DEBUG Processing 630/708 atomic regions from SNP 188985 to 189585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,331 DEBUG Processing 666/724 atomic regions from SNP 199649 to 200249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,400 DEBUG Processing 111/637 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:55,414 DEBUG Processing 568/686 atomic regions from SNP 170173 to 170773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,507 DEBUG Processing 631/708 atomic regions from SNP 189285 to 189885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,576 DEBUG Processing 667/724 atomic regions from SNP 199949 to 200549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,628 DEBUG Processing 112/637 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:55,658 DEBUG Processing 569/686 atomic regions from SNP 170473 to 171073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,748 DEBUG Processing 632/708 atomic regions from SNP 189585 to 190185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,826 DEBUG Processing 668/724 atomic regions from SNP 200249 to 200849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,857 DEBUG Processing 113/637 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:55,916 DEBUG Processing 570/686 atomic regions from SNP 170773 to 171373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,007 DEBUG Processing 633/708 atomic regions from SNP 189885 to 190485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,075 DEBUG Processing 669/724 atomic regions from SNP 200549 to 201149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,089 DEBUG Processing 114/637 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:56,191 DEBUG Processing 571/686 atomic regions from SNP 171073 to 171673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,271 DEBUG Processing 634/708 atomic regions from SNP 190185 to 190785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,319 DEBUG Processing 115/637 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:56,322 DEBUG Processing 670/724 atomic regions from SNP 200849 to 201449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,467 DEBUG Processing 572/686 atomic regions from SNP 171373 to 171973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,534 DEBUG Processing 635/708 atomic regions from SNP 190485 to 191085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,545 DEBUG Processing 116/637 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:56,561 DEBUG Processing 671/724 atomic regions from SNP 201149 to 201749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,742 DEBUG Processing 573/686 atomic regions from SNP 171673 to 172273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,779 DEBUG Processing 117/637 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:56,797 DEBUG Processing 636/708 atomic regions from SNP 190785 to 191385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,811 DEBUG Processing 672/724 atomic regions from SNP 201449 to 202049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,017 DEBUG Processing 118/637 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:57,028 DEBUG Processing 574/686 atomic regions from SNP 171973 to 172573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,045 DEBUG Processing 637/708 atomic regions from SNP 191085 to 191685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,071 DEBUG Processing 673/724 atomic regions from SNP 201749 to 202349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,263 DEBUG Processing 119/637 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:57,299 DEBUG Processing 638/708 atomic regions from SNP 191385 to 191985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,316 DEBUG Processing 575/686 atomic regions from SNP 172273 to 172873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,322 DEBUG Processing 674/724 atomic regions from SNP 202049 to 202649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,491 DEBUG Processing 120/637 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:57,539 DEBUG Processing 639/708 atomic regions from SNP 191685 to 192285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,572 DEBUG Processing 675/724 atomic regions from SNP 202349 to 202949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,594 DEBUG Processing 576/686 atomic regions from SNP 172573 to 173173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,731 DEBUG Processing 121/637 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:57,784 DEBUG Processing 640/708 atomic regions from SNP 191985 to 192585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,825 DEBUG Processing 676/724 atomic regions from SNP 202649 to 203249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,878 DEBUG Processing 577/686 atomic regions from SNP 172873 to 173473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,969 DEBUG Processing 122/637 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:58,030 DEBUG Processing 641/708 atomic regions from SNP 192285 to 192885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,081 DEBUG Processing 677/724 atomic regions from SNP 202949 to 203549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,156 DEBUG Processing 578/686 atomic regions from SNP 173173 to 173773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,197 DEBUG Processing 123/637 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:58,269 DEBUG Processing 642/708 atomic regions from SNP 192585 to 193185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,333 DEBUG Processing 678/724 atomic regions from SNP 203249 to 203849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,427 DEBUG Processing 124/637 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:58,437 DEBUG Processing 579/686 atomic regions from SNP 173473 to 174073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,518 DEBUG Processing 643/708 atomic regions from SNP 192885 to 193485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,585 DEBUG Processing 679/724 atomic regions from SNP 203549 to 204149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,659 DEBUG Processing 125/637 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:58,725 DEBUG Processing 580/686 atomic regions from SNP 173773 to 174373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,771 DEBUG Processing 644/708 atomic regions from SNP 193185 to 193785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,830 DEBUG Processing 680/724 atomic regions from SNP 203849 to 204449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,885 DEBUG Processing 126/637 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:58,995 DEBUG Processing 581/686 atomic regions from SNP 174073 to 174673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,999 DEBUG Processing 645/708 atomic regions from SNP 193485 to 194085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,082 DEBUG Processing 681/724 atomic regions from SNP 204149 to 204749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,112 DEBUG Processing 127/637 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:59,234 DEBUG Processing 646/708 atomic regions from SNP 193785 to 194385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,238 DEBUG Processing 582/686 atomic regions from SNP 174373 to 174973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,340 DEBUG Processing 682/724 atomic regions from SNP 204449 to 205049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,344 DEBUG Processing 128/637 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:59,471 DEBUG Processing 647/708 atomic regions from SNP 194085 to 194685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,493 DEBUG Processing 583/686 atomic regions from SNP 174673 to 175273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,579 DEBUG Processing 129/637 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:59,591 DEBUG Processing 683/724 atomic regions from SNP 204749 to 205349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,734 DEBUG Processing 648/708 atomic regions from SNP 194385 to 194985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,761 DEBUG Processing 584/686 atomic regions from SNP 174973 to 175573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,837 DEBUG Processing 130/637 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 3 of 3). 2025-01-31 09:49:59,842 DEBUG Processing 684/724 atomic regions from SNP 205049 to 205649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,002 DEBUG Processing 649/708 atomic regions from SNP 194685 to 195285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,015 DEBUG Processing 585/686 atomic regions from SNP 175273 to 175873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,078 DEBUG Processing 131/637 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:00,092 DEBUG Processing 685/724 atomic regions from SNP 205349 to 205949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,279 DEBUG Processing 650/708 atomic regions from SNP 194985 to 195585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,285 DEBUG Processing 586/686 atomic regions from SNP 175573 to 176173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,322 DEBUG Processing 132/637 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:00,355 DEBUG Processing 686/724 atomic regions from SNP 205649 to 206249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,530 DEBUG Processing 651/708 atomic regions from SNP 195285 to 195885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,535 DEBUG Processing 587/686 atomic regions from SNP 175873 to 176473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,564 DEBUG Processing 133/637 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:00,608 DEBUG Processing 687/724 atomic regions from SNP 205949 to 206549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,783 DEBUG Processing 588/686 atomic regions from SNP 176173 to 176773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,791 DEBUG Processing 652/708 atomic regions from SNP 195585 to 196185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,832 DEBUG Processing 134/637 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:00,866 DEBUG Processing 688/724 atomic regions from SNP 206249 to 206849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,020 DEBUG Processing 589/686 atomic regions from SNP 176473 to 177073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,039 DEBUG Processing 653/708 atomic regions from SNP 195885 to 196485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,078 DEBUG Processing 135/637 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:01,118 DEBUG Processing 689/724 atomic regions from SNP 206549 to 207149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,266 DEBUG Processing 590/686 atomic regions from SNP 176773 to 177373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,318 DEBUG Processing 654/708 atomic regions from SNP 196185 to 196785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,326 DEBUG Processing 136/637 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:01,378 DEBUG Processing 690/724 atomic regions from SNP 206849 to 207449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,520 DEBUG Processing 591/686 atomic regions from SNP 177073 to 177673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,599 DEBUG Processing 137/637 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:01,603 DEBUG Processing 655/708 atomic regions from SNP 196485 to 197085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,633 DEBUG Processing 691/724 atomic regions from SNP 207149 to 207749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,768 DEBUG Processing 592/686 atomic regions from SNP 177373 to 177973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,871 DEBUG Processing 138/637 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:01,878 DEBUG Processing 656/708 atomic regions from SNP 196785 to 197385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,888 DEBUG Processing 692/724 atomic regions from SNP 207449 to 208049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,012 DEBUG Processing 593/686 atomic regions from SNP 177673 to 178273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,129 DEBUG Processing 139/637 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:02,143 DEBUG Processing 657/708 atomic regions from SNP 197085 to 197685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,145 DEBUG Processing 693/724 atomic regions from SNP 207749 to 208349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,258 DEBUG Processing 594/686 atomic regions from SNP 177973 to 178573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,375 DEBUG Processing 140/637 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:02,396 DEBUG Processing 694/724 atomic regions from SNP 208049 to 208649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,398 DEBUG Processing 658/708 atomic regions from SNP 197385 to 197985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,512 DEBUG Processing 595/686 atomic regions from SNP 178273 to 178873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,603 DEBUG Processing 141/637 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:02,645 DEBUG Processing 659/708 atomic regions from SNP 197685 to 198285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,646 DEBUG Processing 695/724 atomic regions from SNP 208349 to 208949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,762 DEBUG Processing 596/686 atomic regions from SNP 178573 to 179173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,836 DEBUG Processing 142/637 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:02,894 DEBUG Processing 696/724 atomic regions from SNP 208649 to 209249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,898 DEBUG Processing 660/708 atomic regions from SNP 197985 to 198585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,024 DEBUG Processing 597/686 atomic regions from SNP 178873 to 179473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,093 DEBUG Processing 143/637 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:03,141 DEBUG Processing 697/724 atomic regions from SNP 208949 to 209549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,145 DEBUG Processing 661/708 atomic regions from SNP 198285 to 198885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,290 DEBUG Processing 598/686 atomic regions from SNP 179173 to 179773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,355 DEBUG Processing 144/637 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:03,394 DEBUG Processing 698/724 atomic regions from SNP 209249 to 209849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,406 DEBUG Processing 662/708 atomic regions from SNP 198585 to 199185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,558 DEBUG Processing 599/686 atomic regions from SNP 179473 to 180073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,591 DEBUG Processing 145/637 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:03,642 DEBUG Processing 699/724 atomic regions from SNP 209549 to 210149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,671 DEBUG Processing 663/708 atomic regions from SNP 198885 to 199485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,804 DEBUG Processing 600/686 atomic regions from SNP 179773 to 180373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,819 DEBUG Processing 146/637 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:03,886 DEBUG Processing 700/724 atomic regions from SNP 209849 to 210449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,944 DEBUG Processing 664/708 atomic regions from SNP 199185 to 199785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,054 DEBUG Processing 147/637 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:04,056 DEBUG Processing 601/686 atomic regions from SNP 180073 to 180673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,135 DEBUG Processing 701/724 atomic regions from SNP 210149 to 210749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,218 DEBUG Processing 665/708 atomic regions from SNP 199485 to 200085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,295 DEBUG Processing 148/637 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:04,315 DEBUG Processing 602/686 atomic regions from SNP 180373 to 180973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,375 DEBUG Processing 702/724 atomic regions from SNP 210449 to 211049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,475 DEBUG Processing 666/708 atomic regions from SNP 199785 to 200385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,532 DEBUG Processing 149/637 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:04,569 DEBUG Processing 603/686 atomic regions from SNP 180673 to 181273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,618 DEBUG Processing 703/724 atomic regions from SNP 210749 to 211349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,746 DEBUG Processing 667/708 atomic regions from SNP 200085 to 200685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,766 DEBUG Processing 150/637 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:04,828 DEBUG Processing 604/686 atomic regions from SNP 180973 to 181573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,871 DEBUG Processing 704/724 atomic regions from SNP 211049 to 211649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,006 DEBUG Processing 151/637 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:05,031 DEBUG Processing 668/708 atomic regions from SNP 200385 to 200985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,086 DEBUG Processing 605/686 atomic regions from SNP 181273 to 181873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,153 DEBUG Processing 705/724 atomic regions from SNP 211349 to 211949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,238 DEBUG Processing 152/637 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:05,322 DEBUG Processing 669/708 atomic regions from SNP 200685 to 201285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,337 DEBUG Processing 606/686 atomic regions from SNP 181573 to 182173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,442 DEBUG Processing 706/724 atomic regions from SNP 211649 to 212249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,466 DEBUG Processing 153/637 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:05,591 DEBUG Processing 607/686 atomic regions from SNP 181873 to 182473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,607 DEBUG Processing 670/708 atomic regions from SNP 200985 to 201585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,693 DEBUG Processing 154/637 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:05,728 DEBUG Processing 707/724 atomic regions from SNP 211949 to 212549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,840 DEBUG Processing 608/686 atomic regions from SNP 182173 to 182773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,873 DEBUG Processing 671/708 atomic regions from SNP 201285 to 201885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,924 DEBUG Processing 155/637 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:06,003 DEBUG Processing 708/724 atomic regions from SNP 212249 to 212849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,111 DEBUG Processing 609/686 atomic regions from SNP 182473 to 183073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,147 DEBUG Processing 672/708 atomic regions from SNP 201585 to 202185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,161 DEBUG Processing 156/637 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:06,291 DEBUG Processing 709/724 atomic regions from SNP 212549 to 213149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,384 DEBUG Processing 610/686 atomic regions from SNP 182773 to 183373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,398 DEBUG Processing 157/637 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:06,427 DEBUG Processing 673/708 atomic regions from SNP 201885 to 202485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,557 DEBUG Processing 710/724 atomic regions from SNP 212849 to 213449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,633 DEBUG Processing 158/637 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:06,645 DEBUG Processing 611/686 atomic regions from SNP 183073 to 183673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,706 DEBUG Processing 674/708 atomic regions from SNP 202185 to 202785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,802 DEBUG Processing 711/724 atomic regions from SNP 213149 to 213749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,892 DEBUG Processing 159/637 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:06,904 DEBUG Processing 612/686 atomic regions from SNP 183373 to 183973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,997 DEBUG Processing 675/708 atomic regions from SNP 202485 to 203085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,086 DEBUG Processing 712/724 atomic regions from SNP 213449 to 214049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,157 DEBUG Processing 160/637 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:07,183 DEBUG Processing 613/686 atomic regions from SNP 183673 to 184273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,283 DEBUG Processing 676/708 atomic regions from SNP 202785 to 203385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,376 DEBUG Processing 713/724 atomic regions from SNP 213749 to 214349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,399 DEBUG Processing 161/637 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:07,446 DEBUG Processing 614/686 atomic regions from SNP 183973 to 184573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,572 DEBUG Processing 677/708 atomic regions from SNP 203085 to 203685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,632 DEBUG Processing 162/637 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:07,663 DEBUG Processing 714/724 atomic regions from SNP 214049 to 214649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,710 DEBUG Processing 615/686 atomic regions from SNP 184273 to 184873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,847 DEBUG Processing 678/708 atomic regions from SNP 203385 to 203985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,864 DEBUG Processing 163/637 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:07,947 DEBUG Processing 715/724 atomic regions from SNP 214349 to 214949 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,984 DEBUG Processing 616/686 atomic regions from SNP 184573 to 185173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,091 DEBUG Processing 164/637 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:08,114 DEBUG Processing 679/708 atomic regions from SNP 203685 to 204285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,234 DEBUG Processing 716/724 atomic regions from SNP 214649 to 215249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,248 DEBUG Processing 617/686 atomic regions from SNP 184873 to 185473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,331 DEBUG Processing 165/637 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:08,382 DEBUG Processing 680/708 atomic regions from SNP 203985 to 204585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,501 DEBUG Processing 618/686 atomic regions from SNP 185173 to 185773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,513 DEBUG Processing 717/724 atomic regions from SNP 214949 to 215549 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,560 DEBUG Processing 166/637 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:08,643 DEBUG Processing 681/708 atomic regions from SNP 204285 to 204885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,752 DEBUG Processing 619/686 atomic regions from SNP 185473 to 186073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,765 DEBUG Processing 718/724 atomic regions from SNP 215249 to 215849 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,790 DEBUG Processing 167/637 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:08,891 DEBUG Processing 682/708 atomic regions from SNP 204585 to 205185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,003 DEBUG Processing 620/686 atomic regions from SNP 185773 to 186373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,018 DEBUG Processing 719/724 atomic regions from SNP 215549 to 216149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,026 DEBUG Processing 168/637 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:09,160 DEBUG Processing 683/708 atomic regions from SNP 204885 to 205485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,260 DEBUG Processing 621/686 atomic regions from SNP 186073 to 186673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,268 DEBUG Processing 169/637 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:09,278 DEBUG Processing 720/724 atomic regions from SNP 215849 to 216449 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,406 DEBUG Processing 684/708 atomic regions from SNP 205185 to 205785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,512 DEBUG Processing 170/637 atomic regions from SNP 50869 to 51469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:09,520 DEBUG Processing 622/686 atomic regions from SNP 186373 to 186973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,541 DEBUG Processing 721/724 atomic regions from SNP 216149 to 216749 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,647 DEBUG Processing 685/708 atomic regions from SNP 205485 to 206085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,740 DEBUG Processing 171/637 atomic regions from SNP 51169 to 51769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:09,776 DEBUG Processing 623/686 atomic regions from SNP 186673 to 187273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,799 DEBUG Processing 722/724 atomic regions from SNP 216449 to 217049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,897 DEBUG Processing 686/708 atomic regions from SNP 205785 to 206385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,968 DEBUG Processing 172/637 atomic regions from SNP 51469 to 52069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:10,024 DEBUG Processing 624/686 atomic regions from SNP 186973 to 187573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,048 DEBUG Processing 723/724 atomic regions from SNP 216749 to 217349 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,145 DEBUG Processing 687/708 atomic regions from SNP 206085 to 206685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,190 DEBUG Processing 173/637 atomic regions from SNP 51769 to 52369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:10,270 DEBUG Processing 625/686 atomic regions from SNP 187273 to 187873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,296 DEBUG Processing 724/724 atomic regions from SNP 217049 to 217649 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,390 DEBUG Processing 688/708 atomic regions from SNP 206385 to 206985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,429 DEBUG Processing 174/637 atomic regions from SNP 52069 to 52669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:10,437 DEBUG Unique SNPs positions in subchromosome 1: 217650 2025-01-31 09:50:10,505 DEBUG Processing 626/686 atomic regions from SNP 187573 to 188173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,638 DEBUG Processing 689/708 atomic regions from SNP 206685 to 207285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,663 DEBUG Processing 175/637 atomic regions from SNP 52369 to 52969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:10,757 DEBUG Processing 627/686 atomic regions from SNP 187873 to 188473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,880 DEBUG Processing 690/708 atomic regions from SNP 206985 to 207585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,896 DEBUG Processing 176/637 atomic regions from SNP 52669 to 53269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:11,004 DEBUG Processing 628/686 atomic regions from SNP 188173 to 188773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,122 DEBUG Processing 177/637 atomic regions from SNP 52969 to 53569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:11,131 DEBUG Processing 691/708 atomic regions from SNP 207285 to 207885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,282 DEBUG Processing 629/686 atomic regions from SNP 188473 to 189073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,348 DEBUG Processing 178/637 atomic regions from SNP 53269 to 53869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:11,372 DEBUG Processing 692/708 atomic regions from SNP 207585 to 208185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,526 DEBUG Processing 630/686 atomic regions from SNP 188773 to 189373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,574 DEBUG Processing 179/637 atomic regions from SNP 53569 to 54169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:11,631 DEBUG Processing 693/708 atomic regions from SNP 207885 to 208485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,775 DEBUG Processing 631/686 atomic regions from SNP 189073 to 189673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,802 DEBUG Processing 180/637 atomic regions from SNP 53869 to 54469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:11,909 DEBUG Processing 694/708 atomic regions from SNP 208185 to 208785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,026 DEBUG Processing 632/686 atomic regions from SNP 189373 to 189973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,031 DEBUG Processing 181/637 atomic regions from SNP 54169 to 54769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:12,157 DEBUG Processing 695/708 atomic regions from SNP 208485 to 209085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,266 DEBUG Processing 182/637 atomic regions from SNP 54469 to 55069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:12,284 DEBUG Processing 633/686 atomic regions from SNP 189673 to 190273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,424 DEBUG Processing 696/708 atomic regions from SNP 208785 to 209385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,496 DEBUG Processing 183/637 atomic regions from SNP 54769 to 55369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:12,529 DEBUG Processing 634/686 atomic regions from SNP 189973 to 190573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,669 DEBUG Processing 697/708 atomic regions from SNP 209085 to 209685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,723 DEBUG Processing 184/637 atomic regions from SNP 55069 to 55669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:12,774 DEBUG Processing 635/686 atomic regions from SNP 190273 to 190873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,909 DEBUG Processing 698/708 atomic regions from SNP 209385 to 209985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,955 DEBUG Processing 185/637 atomic regions from SNP 55369 to 55969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:13,025 DEBUG Processing 636/686 atomic regions from SNP 190573 to 191173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,140 DEBUG Segmenting atomic regions: 2025-01-31 09:50:13,151 DEBUG Processing 699/708 atomic regions from SNP 209685 to 210285 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,185 DEBUG Processing 186/637 atomic regions from SNP 55669 to 56269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:13,239 DEBUG Processing 1/710 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,279 DEBUG Processing 637/686 atomic regions from SNP 190873 to 191473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,404 DEBUG Processing 700/708 atomic regions from SNP 209985 to 210585 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,414 DEBUG Processing 187/637 atomic regions from SNP 55969 to 56569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:13,488 DEBUG Processing 2/710 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,538 DEBUG Processing 638/686 atomic regions from SNP 191173 to 191773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,633 DEBUG Processing 188/637 atomic regions from SNP 56269 to 56869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:13,640 DEBUG Processing 701/708 atomic regions from SNP 210285 to 210885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,738 DEBUG Processing 3/710 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:13,784 DEBUG Processing 639/686 atomic regions from SNP 191473 to 192073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,860 DEBUG Processing 189/637 atomic regions from SNP 56569 to 57169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:13,878 DEBUG Processing 702/708 atomic regions from SNP 210585 to 211185 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,989 DEBUG Processing 4/710 atomic regions from SNP 903 to 1503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,035 DEBUG Processing 640/686 atomic regions from SNP 191773 to 192373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,091 DEBUG Processing 190/637 atomic regions from SNP 56869 to 57469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:14,125 DEBUG Processing 703/708 atomic regions from SNP 210885 to 211485 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,239 DEBUG Processing 5/710 atomic regions from SNP 1203 to 1803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,280 DEBUG Processing 641/686 atomic regions from SNP 192073 to 192673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,318 DEBUG Processing 191/637 atomic regions from SNP 57169 to 57769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:14,364 DEBUG Processing 704/708 atomic regions from SNP 211185 to 211785 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,481 DEBUG Processing 6/710 atomic regions from SNP 1503 to 2103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,530 DEBUG Processing 642/686 atomic regions from SNP 192373 to 192973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,548 DEBUG Processing 192/637 atomic regions from SNP 57469 to 58069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:14,598 DEBUG Processing 705/708 atomic regions from SNP 211485 to 212085 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,720 DEBUG Processing 7/710 atomic regions from SNP 1803 to 2403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:14,775 DEBUG Processing 643/686 atomic regions from SNP 192673 to 193273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,777 DEBUG Processing 193/637 atomic regions from SNP 57769 to 58369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:14,833 DEBUG Processing 706/708 atomic regions from SNP 211785 to 212385 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,955 DEBUG Processing 8/710 atomic regions from SNP 2103 to 2703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,013 DEBUG Processing 194/637 atomic regions from SNP 58069 to 58669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:15,014 DEBUG Processing 644/686 atomic regions from SNP 192973 to 193573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,072 DEBUG Processing 707/708 atomic regions from SNP 212085 to 212685 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,190 DEBUG Processing 9/710 atomic regions from SNP 2403 to 3003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,232 DEBUG Processing 195/637 atomic regions from SNP 58369 to 58969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:15,252 DEBUG Processing 645/686 atomic regions from SNP 193273 to 193873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,311 DEBUG Processing 708/708 atomic regions from SNP 212385 to 212985 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,423 DEBUG Processing 10/710 atomic regions from SNP 2703 to 3303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,448 DEBUG Processing 196/637 atomic regions from SNP 58669 to 59269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:15,458 DEBUG Unique SNPs positions in subchromosome 1: 212986 2025-01-31 09:50:15,487 DEBUG Processing 646/686 atomic regions from SNP 193573 to 194173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,607 DEBUG Subchromosome time: 209.60915851593018, subchromosome SNPs: 217650 2025-01-31 09:50:15,608 DEBUG Estimated BADs: [1.64, 16.43, 0.55, 1.64, 0.82, 4.93, 1.64, 0.21, 0.82, 1.64, 4.93, 0.55, 1.64, 4.93, 16.43, 1.64, 0.41, 0.82, 1.64, 11.50, 1.64] SNP counts: [4718, 128, 2721, 43970, 11359, 6368, 5965, 4201, 11392, 4293, 6957, 2541, 18053, 7180, 4196, 30605, 7797, 18119, 20758, 3429, 2900] SNP IDs counts: [4718, 128, 2721, 43970, 11359, 6368, 5965, 4201, 11392, 4293, 6957, 2541, 18053, 7180, 4196, 30605, 7797, 18119, 20758, 3429, 2900] Critical gap: 627694bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.78Mbp, 5.85Mbp, 7.61Mbp, 33.24Mbp, 40.08Mbp, 43.47Mbp, 46.81Mbp, 49.80Mbp, 56.99Mbp, 59.79Mbp, 63.45Mbp, 65.23Mbp, 75.63Mbp, 79.64Mbp, 82.20Mbp, 99.28Mbp, 104.38Mbp, 115.24Mbp, 126.90Mbp, 128.72Mbp, 130.69Mbp] 2025-01-31 09:50:15,608 DEBUG chr10 time: 209.60978700965643 s 2025-01-31 09:50:15,656 DEBUG Processing 11/710 atomic regions from SNP 3003 to 3603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,668 DEBUG Processing 197/637 atomic regions from SNP 58969 to 59569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:15,721 DEBUG Processing 647/686 atomic regions from SNP 193873 to 194473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,751 DEBUG chr10: Fitting background model for 21 segments 2025-01-31 09:50:15,887 DEBUG Processing 12/710 atomic regions from SNP 3303 to 3903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:15,891 DEBUG Processing 198/637 atomic regions from SNP 59269 to 59869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:15,963 DEBUG Processing 648/686 atomic regions from SNP 194173 to 194773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,115 DEBUG Processing 199/637 atomic regions from SNP 59569 to 60169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:16,124 DEBUG Processing 13/710 atomic regions from SNP 3603 to 4203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,211 DEBUG Processing 649/686 atomic regions from SNP 194473 to 195073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,340 DEBUG Processing 200/637 atomic regions from SNP 59869 to 60469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:16,364 DEBUG Processing 14/710 atomic regions from SNP 3903 to 4503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,448 DEBUG Processing 650/686 atomic regions from SNP 194773 to 195373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,569 DEBUG Processing 201/637 atomic regions from SNP 60169 to 60769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:16,603 DEBUG Processing 15/710 atomic regions from SNP 4203 to 4803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,688 DEBUG Processing 651/686 atomic regions from SNP 195073 to 195673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,826 DEBUG Processing 202/637 atomic regions from SNP 60469 to 61069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:16,860 DEBUG Processing 16/710 atomic regions from SNP 4503 to 5103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:16,940 DEBUG Processing 652/686 atomic regions from SNP 195373 to 195973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,075 DEBUG Processing 203/637 atomic regions from SNP 60769 to 61369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:17,127 DEBUG Processing 17/710 atomic regions from SNP 4803 to 5403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,257 DEBUG Processing 653/686 atomic regions from SNP 195673 to 196273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,349 DEBUG Processing 204/637 atomic regions from SNP 61069 to 61669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:17,375 DEBUG Processing 18/710 atomic regions from SNP 5103 to 5703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,504 DEBUG Processing 654/686 atomic regions from SNP 195973 to 196573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,581 DEBUG Processing 205/637 atomic regions from SNP 61369 to 61969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:17,610 DEBUG Processing 19/710 atomic regions from SNP 5403 to 6003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:17,750 DEBUG Processing 655/686 atomic regions from SNP 196273 to 196873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,810 DEBUG Processing 206/637 atomic regions from SNP 61669 to 62269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:17,847 DEBUG Processing 20/710 atomic regions from SNP 5703 to 6303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,031 DEBUG Processing 656/686 atomic regions from SNP 196573 to 197173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,039 DEBUG Processing 207/637 atomic regions from SNP 61969 to 62569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:18,085 DEBUG Processing 21/710 atomic regions from SNP 6003 to 6603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,276 DEBUG Processing 208/637 atomic regions from SNP 62269 to 62869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:18,285 DEBUG Processing 657/686 atomic regions from SNP 196873 to 197473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,321 DEBUG Processing 22/710 atomic regions from SNP 6303 to 6903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,512 DEBUG Processing 209/637 atomic regions from SNP 62569 to 63169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:18,543 DEBUG Processing 658/686 atomic regions from SNP 197173 to 197773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,561 DEBUG Processing 23/710 atomic regions from SNP 6603 to 7203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:18,795 DEBUG Processing 210/637 atomic regions from SNP 62869 to 63469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:18,843 DEBUG Processing 659/686 atomic regions from SNP 197473 to 198073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,846 DEBUG Processing 24/710 atomic regions from SNP 6903 to 7503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,029 DEBUG Processing 211/637 atomic regions from SNP 63169 to 63769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:19,082 DEBUG Processing 25/710 atomic regions from SNP 7203 to 7803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,120 DEBUG Processing 660/686 atomic regions from SNP 197773 to 198373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,261 DEBUG Processing 212/637 atomic regions from SNP 63469 to 64069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:19,321 DEBUG Processing 26/710 atomic regions from SNP 7503 to 8103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,390 DEBUG Processing 661/686 atomic regions from SNP 198073 to 198673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,499 DEBUG Processing 213/637 atomic regions from SNP 63769 to 64369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:19,572 DEBUG Processing 27/710 atomic regions from SNP 7803 to 8403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,670 DEBUG Processing 662/686 atomic regions from SNP 198373 to 198973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,735 DEBUG Processing 214/637 atomic regions from SNP 64069 to 64669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:19,811 DEBUG Processing 28/710 atomic regions from SNP 8103 to 8703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:19,959 DEBUG Processing 663/686 atomic regions from SNP 198673 to 199273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,974 DEBUG Processing 215/637 atomic regions from SNP 64369 to 64969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:20,050 DEBUG Processing 29/710 atomic regions from SNP 8403 to 9003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,219 DEBUG Processing 216/637 atomic regions from SNP 64669 to 65269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:20,233 DEBUG Processing 664/686 atomic regions from SNP 198973 to 199573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,292 DEBUG Processing 30/710 atomic regions from SNP 8703 to 9303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,441 DEBUG Processing 217/637 atomic regions from SNP 64969 to 65569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:20,499 DEBUG Processing 665/686 atomic regions from SNP 199273 to 199873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,536 DEBUG Processing 31/710 atomic regions from SNP 9003 to 9603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,664 DEBUG Processing 218/637 atomic regions from SNP 65269 to 65869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:20,755 DEBUG Processing 666/686 atomic regions from SNP 199573 to 200173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,778 DEBUG Processing 32/710 atomic regions from SNP 9303 to 9903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:20,891 DEBUG Processing 219/637 atomic regions from SNP 65569 to 66169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:21,014 DEBUG Processing 667/686 atomic regions from SNP 199873 to 200473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,024 DEBUG Processing 33/710 atomic regions from SNP 9603 to 10203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,119 DEBUG Processing 220/637 atomic regions from SNP 65869 to 66469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:21,267 DEBUG Processing 34/710 atomic regions from SNP 9903 to 10503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,280 DEBUG Processing 668/686 atomic regions from SNP 200173 to 200773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,351 DEBUG Processing 221/637 atomic regions from SNP 66169 to 66769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:21,507 DEBUG Processing 35/710 atomic regions from SNP 10203 to 10803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,534 DEBUG Processing 669/686 atomic regions from SNP 200473 to 201073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,577 DEBUG Processing 222/637 atomic regions from SNP 66469 to 67069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:21,740 DEBUG Processing 36/710 atomic regions from SNP 10503 to 11103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:21,793 DEBUG Processing 670/686 atomic regions from SNP 200773 to 201373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,800 DEBUG Processing 223/637 atomic regions from SNP 66769 to 67369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:21,974 DEBUG Processing 37/710 atomic regions from SNP 10803 to 11403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,024 DEBUG Processing 224/637 atomic regions from SNP 67069 to 67669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:22,044 DEBUG Processing 671/686 atomic regions from SNP 201073 to 201673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,204 DEBUG Processing 38/710 atomic regions from SNP 11103 to 11703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,246 DEBUG Processing 225/637 atomic regions from SNP 67369 to 67969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:22,282 DEBUG Processing 672/686 atomic regions from SNP 201373 to 201973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,434 DEBUG Processing 39/710 atomic regions from SNP 11403 to 12003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,468 DEBUG Processing 226/637 atomic regions from SNP 67669 to 68269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:22,518 DEBUG Processing 673/686 atomic regions from SNP 201673 to 202273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,667 DEBUG Processing 40/710 atomic regions from SNP 11703 to 12303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,693 DEBUG Processing 227/637 atomic regions from SNP 67969 to 68569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:22,756 DEBUG Processing 674/686 atomic regions from SNP 201973 to 202573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,910 DEBUG Processing 41/710 atomic regions from SNP 12003 to 12603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:22,922 DEBUG Processing 228/637 atomic regions from SNP 68269 to 68869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:22,997 DEBUG Processing 675/686 atomic regions from SNP 202273 to 202873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,149 DEBUG Processing 42/710 atomic regions from SNP 12303 to 12903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,153 DEBUG Processing 229/637 atomic regions from SNP 68569 to 69169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:23,238 DEBUG Processing 676/686 atomic regions from SNP 202573 to 203173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,380 DEBUG Processing 230/637 atomic regions from SNP 68869 to 69469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:23,390 DEBUG Processing 43/710 atomic regions from SNP 12603 to 13203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,488 DEBUG Processing 677/686 atomic regions from SNP 202873 to 203473 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,603 DEBUG Processing 231/637 atomic regions from SNP 69169 to 69769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:23,629 DEBUG Processing 44/710 atomic regions from SNP 12903 to 13503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:23,746 DEBUG Processing 678/686 atomic regions from SNP 203173 to 203773 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,828 DEBUG Processing 232/637 atomic regions from SNP 69469 to 70069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:23,876 DEBUG Processing 45/710 atomic regions from SNP 13203 to 13803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,001 DEBUG Processing 679/686 atomic regions from SNP 203473 to 204073 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,054 DEBUG Processing 233/637 atomic regions from SNP 69769 to 70369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:24,119 DEBUG Processing 46/710 atomic regions from SNP 13503 to 14103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,250 DEBUG Processing 680/686 atomic regions from SNP 203773 to 204373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,293 DEBUG Processing 234/637 atomic regions from SNP 70069 to 70669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:24,360 DEBUG Processing 47/710 atomic regions from SNP 13803 to 14403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,501 DEBUG Processing 681/686 atomic regions from SNP 204073 to 204673 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,565 DEBUG Processing 235/637 atomic regions from SNP 70369 to 70969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:24,606 DEBUG Processing 48/710 atomic regions from SNP 14103 to 14703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:24,752 DEBUG Processing 682/686 atomic regions from SNP 204373 to 204973 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,833 DEBUG Processing 236/637 atomic regions from SNP 70669 to 71269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:24,852 DEBUG Processing 49/710 atomic regions from SNP 14403 to 15003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,003 DEBUG Processing 683/686 atomic regions from SNP 204673 to 205273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,080 DEBUG Processing 237/637 atomic regions from SNP 70969 to 71569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:25,103 DEBUG Processing 50/710 atomic regions from SNP 14703 to 15303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,260 DEBUG Processing 684/686 atomic regions from SNP 204973 to 205573 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,318 DEBUG Processing 238/637 atomic regions from SNP 71269 to 71869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:25,373 DEBUG Processing 51/710 atomic regions from SNP 15003 to 15603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,504 DEBUG Processing 685/686 atomic regions from SNP 205273 to 205873 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,549 DEBUG Processing 239/637 atomic regions from SNP 71569 to 72169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:25,621 DEBUG Processing 52/710 atomic regions from SNP 15303 to 15903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,746 DEBUG Processing 686/686 atomic regions from SNP 205573 to 206173 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,780 DEBUG Processing 240/637 atomic regions from SNP 71869 to 72469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:25,867 DEBUG Processing 53/710 atomic regions from SNP 15603 to 16203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:25,900 DEBUG Unique SNPs positions in subchromosome 3: 206174 2025-01-31 09:50:26,054 DEBUG Processing 241/637 atomic regions from SNP 72169 to 72769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:26,112 DEBUG Processing 54/710 atomic regions from SNP 15903 to 16503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,332 DEBUG Processing 242/637 atomic regions from SNP 72469 to 73069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:26,367 DEBUG Processing 55/710 atomic regions from SNP 16203 to 16803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,611 DEBUG Processing 243/637 atomic regions from SNP 72769 to 73369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:26,630 DEBUG Processing 56/710 atomic regions from SNP 16503 to 17103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:26,859 DEBUG Processing 244/637 atomic regions from SNP 73069 to 73669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:26,882 DEBUG Processing 57/710 atomic regions from SNP 16803 to 17403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,093 DEBUG Processing 245/637 atomic regions from SNP 73369 to 73969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:27,130 DEBUG Processing 58/710 atomic regions from SNP 17103 to 17703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,322 DEBUG Processing 246/637 atomic regions from SNP 73669 to 74269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:27,385 DEBUG Processing 59/710 atomic regions from SNP 17403 to 18003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,549 DEBUG Processing 247/637 atomic regions from SNP 73969 to 74569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:27,635 DEBUG Processing 60/710 atomic regions from SNP 17703 to 18303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,774 DEBUG Processing 248/637 atomic regions from SNP 74269 to 74869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:27,781 DEBUG Subchromosome time: 212.44534986838698, subchromosome SNPs: 212986 2025-01-31 09:50:27,781 DEBUG Estimated BADs: [4.03, 0.20, 0.67, 4.03, 2.02, 4.03, 0.34, 2.02, 0.22, 1.01, 0.40, 18.15, 0.50, 20.16, 1.01, 18.15, 6.05, 2.02, 12.10, 2.02, 6.05, 0.29, 1.01, 6.05, 2.02, 6.05, 2.02, 4.03, 14.11, 4.03] SNP counts: [2646, 4028, 3610, 9639, 15596, 4003, 3594, 12649, 3608, 17458, 10658, 149, 5135, 99, 14371, 2274, 2465, 18770, 2932, 16613, 4269, 9891, 3077, 5208, 6515, 1916, 8617, 4679, 9322, 9195] SNP IDs counts: [2646, 4028, 3610, 9639, 15596, 4003, 3594, 12649, 3608, 17458, 10658, 149, 5135, 99, 14371, 2274, 2465, 18770, 2932, 16613, 4269, 9891, 3077, 5208, 6515, 1916, 8617, 4679, 9322, 9195] Critical gap: 628234bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.69Mbp, 7.65Mbp, 9.72Mbp, 14.87Mbp, 25.60Mbp, 27.83Mbp, 30.18Mbp, 37.41Mbp, 39.84Mbp, 50.02Mbp, 57.46Mbp, 57.54Mbp, 60.95Mbp, 61.01Mbp, 69.75Mbp, 70.93Mbp, 72.47Mbp, 83.56Mbp, 85.09Mbp, 94.16Mbp, 96.50Mbp, 102.82Mbp, 104.53Mbp, 107.38Mbp, 110.85Mbp, 111.85Mbp, 116.87Mbp, 119.34Mbp, 124.31Mbp, 129.40Mbp] 2025-01-31 09:50:27,781 DEBUG chr8 time: 212.44595097750425 s 2025-01-31 09:50:27,878 DEBUG Processing 61/710 atomic regions from SNP 18003 to 18603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:27,919 DEBUG chr8: Fitting background model for 30 segments 2025-01-31 09:50:28,006 DEBUG Processing 249/637 atomic regions from SNP 74569 to 75169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:28,122 DEBUG Processing 62/710 atomic regions from SNP 18303 to 18903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,245 DEBUG Processing 250/637 atomic regions from SNP 74869 to 75469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:28,371 DEBUG Processing 63/710 atomic regions from SNP 18603 to 19203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,512 DEBUG Processing 251/637 atomic regions from SNP 75169 to 75769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:28,631 DEBUG Processing 64/710 atomic regions from SNP 18903 to 19503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:28,860 DEBUG Processing 252/637 atomic regions from SNP 75469 to 76069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:28,958 DEBUG Processing 65/710 atomic regions from SNP 19203 to 19803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,162 DEBUG Processing 253/637 atomic regions from SNP 75769 to 76369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:29,281 DEBUG Processing 66/710 atomic regions from SNP 19503 to 20103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,512 DEBUG Processing 254/637 atomic regions from SNP 76069 to 76669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:29,621 DEBUG Processing 67/710 atomic regions from SNP 19803 to 20403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:29,775 DEBUG Processing 255/637 atomic regions from SNP 76369 to 76969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:29,882 DEBUG Processing 68/710 atomic regions from SNP 20103 to 20703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,023 DEBUG Processing 256/637 atomic regions from SNP 76669 to 77269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:30,129 DEBUG Processing 69/710 atomic regions from SNP 20403 to 21003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,267 DEBUG Processing 257/637 atomic regions from SNP 76969 to 77569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:30,373 DEBUG Processing 70/710 atomic regions from SNP 20703 to 21303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,532 DEBUG Processing 258/637 atomic regions from SNP 77269 to 77869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:30,617 DEBUG Processing 71/710 atomic regions from SNP 21003 to 21603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:30,799 DEBUG Processing 259/637 atomic regions from SNP 77569 to 78169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:30,874 DEBUG Processing 72/710 atomic regions from SNP 21303 to 21903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,065 DEBUG Processing 260/637 atomic regions from SNP 77869 to 78469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:31,178 DEBUG Processing 73/710 atomic regions from SNP 21603 to 22203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,353 DEBUG Processing 261/637 atomic regions from SNP 78169 to 78769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:31,454 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:50:31,455 DEBUG Processing 74/710 atomic regions from SNP 21903 to 22503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,602 DEBUG Processing 262/637 atomic regions from SNP 78469 to 79069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:31,721 DEBUG Processing 75/710 atomic regions from SNP 22203 to 22803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:31,833 DEBUG Processing 263/637 atomic regions from SNP 78769 to 79369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:31,977 DEBUG Processing 76/710 atomic regions from SNP 22503 to 23103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,084 DEBUG Processing 264/637 atomic regions from SNP 79069 to 79669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:32,232 DEBUG Processing 77/710 atomic regions from SNP 22803 to 23403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,349 DEBUG Processing 265/637 atomic regions from SNP 79369 to 79969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:32,486 DEBUG Processing 78/710 atomic regions from SNP 23103 to 23703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,602 DEBUG Processing 266/637 atomic regions from SNP 79669 to 80269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:32,737 DEBUG Processing 79/710 atomic regions from SNP 23403 to 24003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:32,830 DEBUG Processing 267/637 atomic regions from SNP 79969 to 80569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:32,992 DEBUG Processing 80/710 atomic regions from SNP 23703 to 24303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,074 DEBUG Processing 268/637 atomic regions from SNP 80269 to 80869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:33,234 DEBUG Processing 81/710 atomic regions from SNP 24003 to 24603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,288 DEBUG Processing 269/637 atomic regions from SNP 80569 to 81169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:33,485 DEBUG Processing 82/710 atomic regions from SNP 24303 to 24903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,502 DEBUG Processing 270/637 atomic regions from SNP 80869 to 81469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:33,724 DEBUG Processing 271/637 atomic regions from SNP 81169 to 81769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:33,734 DEBUG Processing 83/710 atomic regions from SNP 24603 to 25203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:33,968 DEBUG Processing 272/637 atomic regions from SNP 81469 to 82069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:33,983 DEBUG Processing 84/710 atomic regions from SNP 24903 to 25503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,207 DEBUG Processing 273/637 atomic regions from SNP 81769 to 82369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:34,233 DEBUG Processing 85/710 atomic regions from SNP 25203 to 25803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,435 DEBUG Processing 274/637 atomic regions from SNP 82069 to 82669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:34,489 DEBUG Processing 86/710 atomic regions from SNP 25503 to 26103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,664 DEBUG Processing 275/637 atomic regions from SNP 82369 to 82969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:34,738 DEBUG Processing 87/710 atomic regions from SNP 25803 to 26403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:34,898 DEBUG Processing 276/637 atomic regions from SNP 82669 to 83269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:34,982 DEBUG Processing 88/710 atomic regions from SNP 26103 to 26703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,131 DEBUG Processing 277/637 atomic regions from SNP 82969 to 83569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:35,228 DEBUG Processing 89/710 atomic regions from SNP 26403 to 27003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,357 DEBUG Processing 278/637 atomic regions from SNP 83269 to 83869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:35,472 DEBUG Processing 90/710 atomic regions from SNP 26703 to 27303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,576 DEBUG Processing 279/637 atomic regions from SNP 83569 to 84169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:35,719 DEBUG Processing 91/710 atomic regions from SNP 27003 to 27603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,790 DEBUG Processing 280/637 atomic regions from SNP 83869 to 84469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:35,956 DEBUG Processing 92/710 atomic regions from SNP 27303 to 27903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:35,995 DEBUG Processing 281/637 atomic regions from SNP 84169 to 84769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:36,201 DEBUG Processing 93/710 atomic regions from SNP 27603 to 28203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,212 DEBUG Processing 282/637 atomic regions from SNP 84469 to 85069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:36,423 DEBUG Processing 283/637 atomic regions from SNP 84769 to 85369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:36,439 DEBUG Processing 94/710 atomic regions from SNP 27903 to 28503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,635 DEBUG Processing 284/637 atomic regions from SNP 85069 to 85669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:36,696 DEBUG Processing 95/710 atomic regions from SNP 28203 to 28803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:36,844 DEBUG Processing 285/637 atomic regions from SNP 85369 to 85969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:36,960 DEBUG Processing 96/710 atomic regions from SNP 28503 to 29103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,060 DEBUG Processing 286/637 atomic regions from SNP 85669 to 86269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:37,242 DEBUG Processing 97/710 atomic regions from SNP 28803 to 29403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,282 DEBUG Processing 287/637 atomic regions from SNP 85969 to 86569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:37,508 DEBUG Processing 288/637 atomic regions from SNP 86269 to 86869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:37,542 DEBUG Processing 98/710 atomic regions from SNP 29103 to 29703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,738 DEBUG Processing 289/637 atomic regions from SNP 86569 to 87169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:37,847 DEBUG Processing 99/710 atomic regions from SNP 29403 to 30003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:37,969 DEBUG Processing 290/637 atomic regions from SNP 86869 to 87469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:38,194 DEBUG Processing 100/710 atomic regions from SNP 29703 to 30303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,213 DEBUG Processing 291/637 atomic regions from SNP 87169 to 87769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:38,443 DEBUG Processing 292/637 atomic regions from SNP 87469 to 88069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:38,472 DEBUG Processing 101/710 atomic regions from SNP 30003 to 30603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,680 DEBUG Processing 293/637 atomic regions from SNP 87769 to 88369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:38,735 DEBUG Processing 102/710 atomic regions from SNP 30303 to 30903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:38,927 DEBUG Processing 294/637 atomic regions from SNP 88069 to 88669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:39,015 DEBUG Processing 103/710 atomic regions from SNP 30603 to 31203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,228 DEBUG Processing 295/637 atomic regions from SNP 88369 to 88969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:39,318 DEBUG Processing 104/710 atomic regions from SNP 30903 to 31503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,443 DEBUG Processing 296/637 atomic regions from SNP 88669 to 89269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:39,623 DEBUG Processing 105/710 atomic regions from SNP 31203 to 31803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:39,734 DEBUG Processing 297/637 atomic regions from SNP 88969 to 89569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:40,013 DEBUG Processing 106/710 atomic regions from SNP 31503 to 32103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,084 DEBUG Processing 298/637 atomic regions from SNP 89269 to 89869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:40,259 DEBUG Processing 107/710 atomic regions from SNP 31803 to 32403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,318 DEBUG Processing 299/637 atomic regions from SNP 89569 to 90169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:40,497 DEBUG Processing 108/710 atomic regions from SNP 32103 to 32703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,540 DEBUG Processing 300/637 atomic regions from SNP 89869 to 90469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:40,782 DEBUG Processing 109/710 atomic regions from SNP 32403 to 33003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:40,841 DEBUG Processing 301/637 atomic regions from SNP 90169 to 90769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:41,087 DEBUG Processing 110/710 atomic regions from SNP 32703 to 33303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,149 DEBUG Processing 302/637 atomic regions from SNP 90469 to 91069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:41,218 DEBUG Subchromosome time: 212.6825962215662, subchromosome SNPs: 206174 2025-01-31 09:50:41,219 DEBUG Estimated BADs: [0.83, 6.65, 0.33, 3.33, 0.55, 16.63, 0.42, 6.65, 0.83, 9.98, 0.00, 0.21, 6.65, 0.83, 6.65, 0.42, 3.33, 1.66, 0.55, 1.66, 13.31, 4.99, 0.33, 1.66, 0.42, 1.66, 0.28, 1.66, 0.55, 1.66, 0.28, 1.66, 4.99, 1.66, 0.24, 1.66, 0.42, 9.98, 0.24, 3.33, 0.83, 3.33, 1.66, 11.64, 1.66, 11.64, 3.33] SNP counts: [804, 2355, 830, 2447, 3677, 271, 3127, 2262, 2353, 2000, 12, 1003, 3362, 1778, 7198, 1797, 3936, 5134, 5333, 2382, 2328, 2850, 1751, 3019, 8090, 2119, 9582, 9011, 8887, 4899, 2688, 2321, 3105, 7187, 5390, 3605, 3717, 149, 3935, 12421, 10229, 3482, 28175, 3228, 23636, 1346, 7101] SNP IDs counts: [804, 2355, 830, 2447, 3677, 271, 3127, 2262, 2353, 2000, 12, 1003, 3362, 1778, 7198, 1797, 3936, 5134, 5333, 2382, 2328, 2850, 1751, 3019, 8090, 2119, 9582, 9011, 8887, 4899, 2688, 2321, 3105, 7187, 5390, 3605, 3717, 149, 3935, 12421, 10229, 3482, 28175, 3228, 23636, 1346, 7101] Critical gap: 675100bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.58Mbp, 5.13Mbp, 5.76Mbp, 7.30Mbp, 12.92Mbp, 13.07Mbp, 15.92Mbp, 17.10Mbp, 18.99Mbp, 20.07Mbp[0.70Mbp], 20.95Mbp[1.82Mbp], 24.08Mbp, 25.93Mbp, 27.15Mbp, 31.07Mbp, 33.72Mbp, 35.91Mbp, 39.55Mbp, 43.11Mbp, 44.46Mbp, 45.68Mbp, 47.17Mbp, 48.37Mbp, 50.04Mbp, 55.37Mbp, 56.66Mbp, 63.48Mbp, 68.39Mbp, 73.52Mbp, 76.33Mbp, 77.95Mbp, 79.23Mbp, 80.85Mbp, 84.82Mbp, 88.55Mbp, 90.63Mbp, 92.83Mbp, 92.91Mbp, 95.54Mbp, 102.20Mbp, 109.09Mbp, 110.94Mbp, 126.26Mbp, 127.97Mbp, 140.80Mbp, 141.50Mbp, 145.44Mbp] 2025-01-31 09:50:41,219 DEBUG chr7 time: 212.68327187001705 s 2025-01-31 09:50:41,391 DEBUG chr7: Fitting background model for 46 segments 2025-01-31 09:50:41,421 DEBUG Processing 111/710 atomic regions from SNP 33003 to 33603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,426 DEBUG Processing 303/637 atomic regions from SNP 90769 to 91369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:41,763 DEBUG Processing 112/710 atomic regions from SNP 33303 to 33903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:41,765 DEBUG Processing 304/637 atomic regions from SNP 91069 to 91669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:42,128 DEBUG Processing 305/637 atomic regions from SNP 91369 to 91969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:42,141 DEBUG Processing 113/710 atomic regions from SNP 33603 to 34203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,414 DEBUG Processing 306/637 atomic regions from SNP 91669 to 92269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:42,447 DEBUG Processing 114/710 atomic regions from SNP 33903 to 34503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,643 DEBUG Processing 307/637 atomic regions from SNP 91969 to 92569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:42,703 DEBUG Processing 115/710 atomic regions from SNP 34203 to 34803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:42,885 DEBUG Processing 308/637 atomic regions from SNP 92269 to 92869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:42,997 DEBUG Processing 116/710 atomic regions from SNP 34503 to 35103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,187 DEBUG Processing 309/637 atomic regions from SNP 92569 to 93169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:43,325 DEBUG Processing 117/710 atomic regions from SNP 34803 to 35403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,430 DEBUG Processing 310/637 atomic regions from SNP 92869 to 93469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:43,566 DEBUG Processing 118/710 atomic regions from SNP 35103 to 35703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,654 DEBUG Processing 311/637 atomic regions from SNP 93169 to 93769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:43,801 DEBUG Processing 119/710 atomic regions from SNP 35403 to 36003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:43,874 DEBUG Processing 312/637 atomic regions from SNP 93469 to 94069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:44,082 DEBUG Processing 120/710 atomic regions from SNP 35703 to 36303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,140 DEBUG Processing 313/637 atomic regions from SNP 93769 to 94369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:44,352 DEBUG Processing 121/710 atomic regions from SNP 36003 to 36603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,405 DEBUG Processing 314/637 atomic regions from SNP 94069 to 94669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:44,593 DEBUG Processing 122/710 atomic regions from SNP 36303 to 36903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,626 DEBUG Processing 315/637 atomic regions from SNP 94369 to 94969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:44,911 DEBUG Processing 123/710 atomic regions from SNP 36603 to 37203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:44,937 DEBUG Processing 316/637 atomic regions from SNP 94669 to 95269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:45,173 DEBUG Processing 124/710 atomic regions from SNP 36903 to 37503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,185 DEBUG Processing 317/637 atomic regions from SNP 94969 to 95569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:45,423 DEBUG Processing 125/710 atomic regions from SNP 37203 to 37803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,436 DEBUG Processing 318/637 atomic regions from SNP 95269 to 95869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:45,653 DEBUG Processing 319/637 atomic regions from SNP 95569 to 96169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:45,663 DEBUG Processing 126/710 atomic regions from SNP 37503 to 38103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:45,872 DEBUG Processing 320/637 atomic regions from SNP 95869 to 96469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:45,904 DEBUG Processing 127/710 atomic regions from SNP 37803 to 38403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,099 DEBUG Processing 321/637 atomic regions from SNP 96169 to 96769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:46,136 DEBUG Processing 128/710 atomic regions from SNP 38103 to 38703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,309 DEBUG Processing 322/637 atomic regions from SNP 96469 to 97069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:46,366 DEBUG Processing 129/710 atomic regions from SNP 38403 to 39003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,518 DEBUG Processing 323/637 atomic regions from SNP 96769 to 97369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:46,595 DEBUG Processing 130/710 atomic regions from SNP 38703 to 39303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,731 DEBUG Processing 324/637 atomic regions from SNP 97069 to 97669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:46,824 DEBUG Processing 131/710 atomic regions from SNP 39003 to 39603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:46,943 DEBUG Processing 325/637 atomic regions from SNP 97369 to 97969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:47,051 DEBUG Processing 132/710 atomic regions from SNP 39303 to 39903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,158 DEBUG Processing 326/637 atomic regions from SNP 97669 to 98269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:47,280 DEBUG Processing 133/710 atomic regions from SNP 39603 to 40203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,376 DEBUG Processing 327/637 atomic regions from SNP 97969 to 98569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:47,513 DEBUG Processing 134/710 atomic regions from SNP 39903 to 40503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,610 DEBUG Processing 328/637 atomic regions from SNP 98269 to 98869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:47,743 DEBUG Processing 135/710 atomic regions from SNP 40203 to 40803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:47,839 DEBUG Processing 329/637 atomic regions from SNP 98569 to 99169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:47,975 DEBUG Processing 136/710 atomic regions from SNP 40503 to 41103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,062 DEBUG Processing 330/637 atomic regions from SNP 98869 to 99469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:48,196 DEBUG Processing 137/710 atomic regions from SNP 40803 to 41403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,288 DEBUG Processing 331/637 atomic regions from SNP 99169 to 99769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:48,425 DEBUG Processing 138/710 atomic regions from SNP 41103 to 41703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,510 DEBUG Processing 332/637 atomic regions from SNP 99469 to 100069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:48,660 DEBUG Processing 139/710 atomic regions from SNP 41403 to 42003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,726 DEBUG Processing 333/637 atomic regions from SNP 99769 to 100369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:48,898 DEBUG Processing 140/710 atomic regions from SNP 41703 to 42303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:48,941 DEBUG Processing 334/637 atomic regions from SNP 100069 to 100669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:49,133 DEBUG Processing 141/710 atomic regions from SNP 42003 to 42603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,153 DEBUG Processing 335/637 atomic regions from SNP 100369 to 100969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:49,365 DEBUG Processing 336/637 atomic regions from SNP 100669 to 101269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:49,368 DEBUG Processing 142/710 atomic regions from SNP 42303 to 42903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,577 DEBUG Processing 337/637 atomic regions from SNP 100969 to 101569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:49,606 DEBUG Processing 143/710 atomic regions from SNP 42603 to 43203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:49,783 DEBUG Processing 338/637 atomic regions from SNP 101269 to 101869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:49,842 DEBUG Processing 144/710 atomic regions from SNP 42903 to 43503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,000 DEBUG Processing 339/637 atomic regions from SNP 101569 to 102169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:50,079 DEBUG Processing 145/710 atomic regions from SNP 43203 to 43803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,213 DEBUG Processing 340/637 atomic regions from SNP 101869 to 102469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:50,312 DEBUG Processing 146/710 atomic regions from SNP 43503 to 44103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,432 DEBUG Processing 341/637 atomic regions from SNP 102169 to 102769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:50,544 DEBUG Processing 147/710 atomic regions from SNP 43803 to 44403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,656 DEBUG Processing 342/637 atomic regions from SNP 102469 to 103069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:50,772 DEBUG Processing 148/710 atomic regions from SNP 44103 to 44703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:50,874 DEBUG Processing 343/637 atomic regions from SNP 102769 to 103369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:51,006 DEBUG Processing 149/710 atomic regions from SNP 44403 to 45003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,096 DEBUG Processing 344/637 atomic regions from SNP 103069 to 103669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:51,238 DEBUG Processing 150/710 atomic regions from SNP 44703 to 45303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,346 DEBUG Processing 345/637 atomic regions from SNP 103369 to 103969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:51,458 DEBUG Processing 151/710 atomic regions from SNP 45003 to 45603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,564 DEBUG Processing 346/637 atomic regions from SNP 103669 to 104269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:51,681 DEBUG Processing 152/710 atomic regions from SNP 45303 to 45903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:51,805 DEBUG Processing 347/637 atomic regions from SNP 103969 to 104569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:51,924 DEBUG Processing 153/710 atomic regions from SNP 45603 to 46203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,044 DEBUG Processing 348/637 atomic regions from SNP 104269 to 104869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:52,155 DEBUG Processing 154/710 atomic regions from SNP 45903 to 46503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,256 DEBUG Processing 349/637 atomic regions from SNP 104569 to 105169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:52,400 DEBUG Processing 155/710 atomic regions from SNP 46203 to 46803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,473 DEBUG Processing 350/637 atomic regions from SNP 104869 to 105469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:52,703 DEBUG Processing 156/710 atomic regions from SNP 46503 to 47103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:52,792 DEBUG Processing 351/637 atomic regions from SNP 105169 to 105769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:53,049 DEBUG Processing 157/710 atomic regions from SNP 46803 to 47403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,115 DEBUG Processing 352/637 atomic regions from SNP 105469 to 106069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:53,340 DEBUG Processing 158/710 atomic regions from SNP 47103 to 47703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,420 DEBUG Processing 353/637 atomic regions from SNP 105769 to 106369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:53,643 DEBUG Processing 159/710 atomic regions from SNP 47403 to 48003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:53,649 DEBUG Processing 354/637 atomic regions from SNP 106069 to 106669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:53,888 DEBUG Processing 355/637 atomic regions from SNP 106369 to 106969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:53,909 DEBUG Processing 160/710 atomic regions from SNP 47703 to 48303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,108 DEBUG Processing 356/637 atomic regions from SNP 106669 to 107269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:54,148 DEBUG Processing 161/710 atomic regions from SNP 48003 to 48603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,175 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:50:54,177 DEBUG chr11: Signal quantile: 0.986. signal threshold: 13. Best RMSEA: 0.012 2025-01-31 09:50:54,310 DEBUG Processing 357/637 atomic regions from SNP 106969 to 107569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:54,384 DEBUG Processing 162/710 atomic regions from SNP 48303 to 48903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,513 DEBUG Processing 358/637 atomic regions from SNP 107269 to 107869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:54,611 DEBUG Processing 163/710 atomic regions from SNP 48603 to 49203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,720 DEBUG Processing 359/637 atomic regions from SNP 107569 to 108169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:54,842 DEBUG Processing 164/710 atomic regions from SNP 48903 to 49503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:54,934 DEBUG Processing 360/637 atomic regions from SNP 107869 to 108469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:55,070 DEBUG Processing 165/710 atomic regions from SNP 49203 to 49803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,149 DEBUG Processing 361/637 atomic regions from SNP 108169 to 108769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:55,301 DEBUG Processing 166/710 atomic regions from SNP 49503 to 50103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,355 DEBUG Processing 362/637 atomic regions from SNP 108469 to 109069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:55,541 DEBUG Processing 167/710 atomic regions from SNP 49803 to 50403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,558 DEBUG Processing 363/637 atomic regions from SNP 108769 to 109369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:55,789 DEBUG Processing 168/710 atomic regions from SNP 50103 to 50703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:55,793 DEBUG Processing 364/637 atomic regions from SNP 109069 to 109669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:56,018 DEBUG Processing 365/637 atomic regions from SNP 109369 to 109969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:56,030 DEBUG Processing 169/710 atomic regions from SNP 50403 to 51003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,227 DEBUG Processing 366/637 atomic regions from SNP 109669 to 110269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:56,266 DEBUG Processing 170/710 atomic regions from SNP 50703 to 51303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,441 DEBUG Processing 367/637 atomic regions from SNP 109969 to 110569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:56,493 DEBUG chr11 total SNP count: 211815 2025-01-31 09:50:56,493 DEBUG chr11 length: 122082543 2025-01-31 09:50:56,493 DEBUG ----------------------------------------- 2025-01-31 09:50:56,493 INFO Processing SNPs in chr11 2025-01-31 09:50:56,512 DEBUG Processing 171/710 atomic regions from SNP 51003 to 51603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,654 DEBUG Processing 368/637 atomic regions from SNP 110269 to 110869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:56,719 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211815)] 2025-01-31 09:50:56,753 DEBUG Processing 172/710 atomic regions from SNP 51303 to 51903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:56,869 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:56,870 DEBUG Processing 369/637 atomic regions from SNP 110569 to 111169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:56,987 DEBUG Processing 173/710 atomic regions from SNP 51603 to 52203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,085 DEBUG Processing 370/637 atomic regions from SNP 110869 to 111469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:57,224 DEBUG Processing 174/710 atomic regions from SNP 51903 to 52503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,292 DEBUG Processing 371/637 atomic regions from SNP 111169 to 111769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:57,461 DEBUG Processing 175/710 atomic regions from SNP 52203 to 52803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,504 DEBUG Processing 372/637 atomic regions from SNP 111469 to 112069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:57,701 DEBUG Processing 176/710 atomic regions from SNP 52503 to 53103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:57,707 DEBUG Processing 373/637 atomic regions from SNP 111769 to 112369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:57,912 DEBUG Processing 374/637 atomic regions from SNP 112069 to 112669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:57,937 DEBUG Processing 177/710 atomic regions from SNP 52803 to 53403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,117 DEBUG Processing 375/637 atomic regions from SNP 112369 to 112969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:58,170 DEBUG Processing 178/710 atomic regions from SNP 53103 to 53703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,321 DEBUG Processing 376/637 atomic regions from SNP 112669 to 113269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:58,403 DEBUG Processing 179/710 atomic regions from SNP 53403 to 54003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,526 DEBUG Processing 377/637 atomic regions from SNP 112969 to 113569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:58,632 DEBUG Processing 180/710 atomic regions from SNP 53703 to 54303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,762 DEBUG Processing 378/637 atomic regions from SNP 113269 to 113869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:58,870 DEBUG Processing 181/710 atomic regions from SNP 54003 to 54603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:58,987 DEBUG Processing 379/637 atomic regions from SNP 113569 to 114169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:59,114 DEBUG Processing 182/710 atomic regions from SNP 54303 to 54903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,201 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:50:59,215 DEBUG Processing 380/637 atomic regions from SNP 113869 to 114469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:59,363 DEBUG Processing 183/710 atomic regions from SNP 54603 to 55203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,446 DEBUG Processing 381/637 atomic regions from SNP 114169 to 114769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:59,614 DEBUG Processing 184/710 atomic regions from SNP 54903 to 55503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,665 DEBUG Processing 382/637 atomic regions from SNP 114469 to 115069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:50:59,899 DEBUG Processing 185/710 atomic regions from SNP 55203 to 55803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:50:59,936 DEBUG Processing 383/637 atomic regions from SNP 114769 to 115369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:00,130 DEBUG Processing 186/710 atomic regions from SNP 55503 to 56103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,152 DEBUG Processing 384/637 atomic regions from SNP 115069 to 115669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:00,359 DEBUG Processing 385/637 atomic regions from SNP 115369 to 115969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:00,362 DEBUG Processing 187/710 atomic regions from SNP 55803 to 56403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,574 DEBUG Processing 386/637 atomic regions from SNP 115669 to 116269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:00,606 DEBUG Processing 188/710 atomic regions from SNP 56103 to 56703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:00,789 DEBUG Processing 387/637 atomic regions from SNP 115969 to 116569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:00,850 DEBUG Processing 189/710 atomic regions from SNP 56403 to 57003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,039 DEBUG Processing 388/637 atomic regions from SNP 116269 to 116869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:01,164 DEBUG Processing 190/710 atomic regions from SNP 56703 to 57303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,298 DEBUG Processing 389/637 atomic regions from SNP 116569 to 117169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:01,504 DEBUG Processing 191/710 atomic regions from SNP 57003 to 57603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,647 DEBUG Processing 390/637 atomic regions from SNP 116869 to 117469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:01,809 DEBUG Processing 192/710 atomic regions from SNP 57303 to 57903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:01,982 DEBUG Processing 391/637 atomic regions from SNP 117169 to 117769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:02,122 DEBUG Processing 193/710 atomic regions from SNP 57603 to 58203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,233 DEBUG Processing 392/637 atomic regions from SNP 117469 to 118069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:02,410 DEBUG Processing 194/710 atomic regions from SNP 57903 to 58503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,512 DEBUG Processing 393/637 atomic regions from SNP 117769 to 118369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:02,653 DEBUG Processing 195/710 atomic regions from SNP 58203 to 58803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,726 DEBUG Processing 394/637 atomic regions from SNP 118069 to 118669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:02,895 DEBUG Processing 196/710 atomic regions from SNP 58503 to 59103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:02,946 DEBUG Processing 395/637 atomic regions from SNP 118369 to 118969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:03,138 DEBUG Processing 197/710 atomic regions from SNP 58803 to 59403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,153 DEBUG Processing 396/637 atomic regions from SNP 118669 to 119269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:03,359 DEBUG Processing 397/637 atomic regions from SNP 118969 to 119569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:03,377 DEBUG Processing 198/710 atomic regions from SNP 59103 to 59703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,564 DEBUG Processing 398/637 atomic regions from SNP 119269 to 119869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:03,617 DEBUG Processing 199/710 atomic regions from SNP 59403 to 60003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:03,788 DEBUG Processing 399/637 atomic regions from SNP 119569 to 120169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:03,860 DEBUG Processing 200/710 atomic regions from SNP 59703 to 60303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,031 DEBUG Processing 400/637 atomic regions from SNP 119869 to 120469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:04,108 DEBUG Processing 201/710 atomic regions from SNP 60003 to 60603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,285 DEBUG Processing 401/637 atomic regions from SNP 120169 to 120769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:04,370 DEBUG Processing 202/710 atomic regions from SNP 60303 to 60903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,581 DEBUG Processing 402/637 atomic regions from SNP 120469 to 121069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:04,677 DEBUG Processing 203/710 atomic regions from SNP 60603 to 61203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:04,802 DEBUG Processing 403/637 atomic regions from SNP 120769 to 121369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:04,967 DEBUG Processing 204/710 atomic regions from SNP 60903 to 61503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,051 DEBUG Processing 404/637 atomic regions from SNP 121069 to 121669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:05,207 DEBUG Processing 205/710 atomic regions from SNP 61203 to 61803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,312 DEBUG Processing 405/637 atomic regions from SNP 121369 to 121969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:05,556 DEBUG Processing 206/710 atomic regions from SNP 61503 to 62103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,600 DEBUG Processing 406/637 atomic regions from SNP 121669 to 122269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:05,803 DEBUG Processing 207/710 atomic regions from SNP 61803 to 62403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:05,828 DEBUG Processing 407/637 atomic regions from SNP 121969 to 122569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:06,034 DEBUG Processing 408/637 atomic regions from SNP 122269 to 122869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:06,038 DEBUG Processing 208/710 atomic regions from SNP 62103 to 62703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,241 DEBUG Processing 409/637 atomic regions from SNP 122569 to 123169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:06,277 DEBUG Processing 209/710 atomic regions from SNP 62403 to 63003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,455 DEBUG Processing 410/637 atomic regions from SNP 122869 to 123469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:06,515 DEBUG Processing 210/710 atomic regions from SNP 62703 to 63303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,675 DEBUG Processing 411/637 atomic regions from SNP 123169 to 123769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:06,765 DEBUG Processing 211/710 atomic regions from SNP 63003 to 63603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:06,895 DEBUG Processing 412/637 atomic regions from SNP 123469 to 124069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:07,009 DEBUG Processing 212/710 atomic regions from SNP 63303 to 63903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,110 DEBUG Processing 413/637 atomic regions from SNP 123769 to 124369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:07,242 DEBUG Processing 213/710 atomic regions from SNP 63603 to 64203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,319 DEBUG Processing 414/637 atomic regions from SNP 124069 to 124669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:07,480 DEBUG Processing 214/710 atomic regions from SNP 63903 to 64503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,532 DEBUG Processing 415/637 atomic regions from SNP 124369 to 124969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:07,730 DEBUG Processing 215/710 atomic regions from SNP 64203 to 64803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:07,744 DEBUG Processing 416/637 atomic regions from SNP 124669 to 125269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:07,961 DEBUG Processing 417/637 atomic regions from SNP 124969 to 125569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:07,977 DEBUG Processing 216/710 atomic regions from SNP 64503 to 65103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,178 DEBUG Processing 418/637 atomic regions from SNP 125269 to 125869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:08,220 DEBUG Processing 217/710 atomic regions from SNP 64803 to 65403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,398 DEBUG Processing 419/637 atomic regions from SNP 125569 to 126169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:08,465 DEBUG Processing 218/710 atomic regions from SNP 65103 to 65703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,612 DEBUG Processing 420/637 atomic regions from SNP 125869 to 126469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:08,706 DEBUG Processing 219/710 atomic regions from SNP 65403 to 66003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:08,818 DEBUG Processing 421/637 atomic regions from SNP 126169 to 126769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:08,947 DEBUG Processing 220/710 atomic regions from SNP 65703 to 66303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,028 DEBUG Processing 422/637 atomic regions from SNP 126469 to 127069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:09,188 DEBUG Processing 221/710 atomic regions from SNP 66003 to 66603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,238 DEBUG Processing 423/637 atomic regions from SNP 126769 to 127369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:09,446 DEBUG Processing 222/710 atomic regions from SNP 66303 to 66903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,452 DEBUG Processing 424/637 atomic regions from SNP 127069 to 127669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:09,665 DEBUG Processing 425/637 atomic regions from SNP 127369 to 127969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:09,689 DEBUG Processing 223/710 atomic regions from SNP 66603 to 67203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:09,886 DEBUG Processing 426/637 atomic regions from SNP 127669 to 128269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:09,947 DEBUG Processing 224/710 atomic regions from SNP 66903 to 67503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,106 DEBUG Processing 427/637 atomic regions from SNP 127969 to 128569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:10,196 DEBUG Processing 225/710 atomic regions from SNP 67203 to 67803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,355 DEBUG Processing 428/637 atomic regions from SNP 128269 to 128869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:10,514 DEBUG Processing 226/710 atomic regions from SNP 67503 to 68103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,622 DEBUG Processing 429/637 atomic regions from SNP 128569 to 129169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:10,880 DEBUG Processing 227/710 atomic regions from SNP 67803 to 68403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:10,929 DEBUG Processing 430/637 atomic regions from SNP 128869 to 129469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:11,183 DEBUG Processing 431/637 atomic regions from SNP 129169 to 129769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:11,185 DEBUG Processing 228/710 atomic regions from SNP 68103 to 68703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,416 DEBUG Processing 432/637 atomic regions from SNP 129469 to 130069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:11,451 DEBUG Processing 229/710 atomic regions from SNP 68403 to 69003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,638 DEBUG Processing 433/637 atomic regions from SNP 129769 to 130369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:11,709 DEBUG Processing 230/710 atomic regions from SNP 68703 to 69303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:11,853 DEBUG Processing 434/637 atomic regions from SNP 130069 to 130669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:11,952 DEBUG Processing 231/710 atomic regions from SNP 69003 to 69603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,069 DEBUG Processing 435/637 atomic regions from SNP 130369 to 130969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:12,227 DEBUG Processing 232/710 atomic regions from SNP 69303 to 69903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,288 DEBUG Processing 436/637 atomic regions from SNP 130669 to 131269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:12,505 DEBUG Processing 233/710 atomic regions from SNP 69603 to 70203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,508 DEBUG Processing 437/637 atomic regions from SNP 130969 to 131569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:12,730 DEBUG Processing 438/637 atomic regions from SNP 131269 to 131869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:12,791 DEBUG Processing 234/710 atomic regions from SNP 69903 to 70503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:12,936 DEBUG Processing 439/637 atomic regions from SNP 131569 to 132169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:13,047 DEBUG Processing 235/710 atomic regions from SNP 70203 to 70803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,144 DEBUG Processing 440/637 atomic regions from SNP 131869 to 132469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:13,292 DEBUG Processing 236/710 atomic regions from SNP 70503 to 71103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,354 DEBUG Processing 441/637 atomic regions from SNP 132169 to 132769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:13,548 DEBUG Processing 237/710 atomic regions from SNP 70803 to 71403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,569 DEBUG Processing 442/637 atomic regions from SNP 132469 to 133069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:13,781 DEBUG Processing 443/637 atomic regions from SNP 132769 to 133369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:13,795 DEBUG Processing 238/710 atomic regions from SNP 71103 to 71703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:13,998 DEBUG Processing 444/637 atomic regions from SNP 133069 to 133669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:14,045 DEBUG Processing 239/710 atomic regions from SNP 71403 to 72003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,235 DEBUG Processing 445/637 atomic regions from SNP 133369 to 133969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:14,318 DEBUG Processing 240/710 atomic regions from SNP 71703 to 72303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,544 DEBUG Processing 446/637 atomic regions from SNP 133669 to 134269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:14,646 DEBUG Processing 241/710 atomic regions from SNP 72003 to 72603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,762 DEBUG Processing 447/637 atomic regions from SNP 133969 to 134569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:14,891 DEBUG Processing 242/710 atomic regions from SNP 72303 to 72903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:14,988 DEBUG Processing 448/637 atomic regions from SNP 134269 to 134869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:15,199 DEBUG Processing 243/710 atomic regions from SNP 72603 to 73203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,267 DEBUG Processing 449/637 atomic regions from SNP 134569 to 135169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:15,519 DEBUG Processing 244/710 atomic regions from SNP 72903 to 73503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,571 DEBUG Processing 450/637 atomic regions from SNP 134869 to 135469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:15,649 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:51:15,651 DEBUG chr13: Signal quantile: 0.991. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:51:15,775 DEBUG Processing 245/710 atomic regions from SNP 73203 to 73803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:15,793 DEBUG Processing 451/637 atomic regions from SNP 135169 to 135769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:16,011 DEBUG Processing 452/637 atomic regions from SNP 135469 to 136069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:16,021 DEBUG Processing 246/710 atomic regions from SNP 73503 to 74103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,226 DEBUG Processing 453/637 atomic regions from SNP 135769 to 136369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:16,257 DEBUG Processing 247/710 atomic regions from SNP 73803 to 74403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,445 DEBUG Processing 454/637 atomic regions from SNP 136069 to 136669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:16,496 DEBUG Processing 248/710 atomic regions from SNP 74103 to 74703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,667 DEBUG Processing 455/637 atomic regions from SNP 136369 to 136969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:16,737 DEBUG Processing 249/710 atomic regions from SNP 74403 to 75003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:16,956 DEBUG Processing 456/637 atomic regions from SNP 136669 to 137269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:17,060 DEBUG Processing 250/710 atomic regions from SNP 74703 to 75303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,177 DEBUG Processing 457/637 atomic regions from SNP 136969 to 137569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:17,360 DEBUG Processing 251/710 atomic regions from SNP 75003 to 75603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,436 DEBUG Processing 458/637 atomic regions from SNP 137269 to 137869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:17,593 DEBUG Processing 252/710 atomic regions from SNP 75303 to 75903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,661 DEBUG Processing 459/637 atomic regions from SNP 137569 to 138169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:17,832 DEBUG Processing 253/710 atomic regions from SNP 75603 to 76203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:17,873 DEBUG Processing 460/637 atomic regions from SNP 137869 to 138469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:18,079 DEBUG Processing 254/710 atomic regions from SNP 75903 to 76503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,088 DEBUG Processing 461/637 atomic regions from SNP 138169 to 138769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:18,104 DEBUG chr13 total SNP count: 199659 2025-01-31 09:51:18,104 DEBUG chr13 length: 120421639 2025-01-31 09:51:18,104 DEBUG ----------------------------------------- 2025-01-31 09:51:18,104 INFO Processing SNPs in chr13 2025-01-31 09:51:18,306 DEBUG Processing 462/637 atomic regions from SNP 138469 to 139069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:18,316 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 199659)] 2025-01-31 09:51:18,327 DEBUG Processing 255/710 atomic regions from SNP 76203 to 76803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,457 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:18,522 DEBUG Processing 463/637 atomic regions from SNP 138769 to 139369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:18,557 DEBUG Processing 256/710 atomic regions from SNP 76503 to 77103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,736 DEBUG Processing 464/637 atomic regions from SNP 139069 to 139669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:18,781 DEBUG Processing 257/710 atomic regions from SNP 76803 to 77403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:18,946 DEBUG Processing 465/637 atomic regions from SNP 139369 to 139969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:19,005 DEBUG Processing 258/710 atomic regions from SNP 77103 to 77703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,153 DEBUG Processing 466/637 atomic regions from SNP 139669 to 140269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:19,236 DEBUG Processing 259/710 atomic regions from SNP 77403 to 78003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,354 DEBUG Processing 467/637 atomic regions from SNP 139969 to 140569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:19,478 DEBUG Processing 260/710 atomic regions from SNP 77703 to 78303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,559 DEBUG Processing 468/637 atomic regions from SNP 140269 to 140869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:19,711 DEBUG Processing 261/710 atomic regions from SNP 78003 to 78603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,762 DEBUG Processing 469/637 atomic regions from SNP 140569 to 141169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:19,945 DEBUG Processing 262/710 atomic regions from SNP 78303 to 78903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:19,969 DEBUG Processing 470/637 atomic regions from SNP 140869 to 141469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:20,176 DEBUG Processing 263/710 atomic regions from SNP 78603 to 79203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,176 DEBUG Processing 471/637 atomic regions from SNP 141169 to 141769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:20,381 DEBUG Processing 472/637 atomic regions from SNP 141469 to 142069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:20,404 DEBUG Processing 264/710 atomic regions from SNP 78903 to 79503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,585 DEBUG Processing 473/637 atomic regions from SNP 141769 to 142369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:20,632 DEBUG Processing 265/710 atomic regions from SNP 79203 to 79803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,787 DEBUG Processing 474/637 atomic regions from SNP 142069 to 142669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:20,861 DEBUG Processing 266/710 atomic regions from SNP 79503 to 80103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:20,997 DEBUG Processing 475/637 atomic regions from SNP 142369 to 142969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:21,097 DEBUG Processing 267/710 atomic regions from SNP 79803 to 80403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,209 DEBUG Processing 476/637 atomic regions from SNP 142669 to 143269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:21,330 DEBUG Processing 268/710 atomic regions from SNP 80103 to 80703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,426 DEBUG Processing 477/637 atomic regions from SNP 142969 to 143569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:21,568 DEBUG Processing 269/710 atomic regions from SNP 80403 to 81003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,638 DEBUG Processing 478/637 atomic regions from SNP 143269 to 143869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:21,805 DEBUG Processing 270/710 atomic regions from SNP 80703 to 81303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:21,853 DEBUG Processing 479/637 atomic regions from SNP 143569 to 144169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:22,046 DEBUG Processing 271/710 atomic regions from SNP 81003 to 81603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,066 DEBUG Processing 480/637 atomic regions from SNP 143869 to 144469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:22,279 DEBUG Processing 481/637 atomic regions from SNP 144169 to 144769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:22,286 DEBUG Processing 272/710 atomic regions from SNP 81303 to 81903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,486 DEBUG Processing 482/637 atomic regions from SNP 144469 to 145069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:22,526 DEBUG Processing 273/710 atomic regions from SNP 81603 to 82203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,695 DEBUG Processing 483/637 atomic regions from SNP 144769 to 145369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:22,782 DEBUG Processing 274/710 atomic regions from SNP 81903 to 82503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:22,911 DEBUG Processing 484/637 atomic regions from SNP 145069 to 145669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:23,019 DEBUG Processing 275/710 atomic regions from SNP 82203 to 82803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,122 DEBUG Processing 485/637 atomic regions from SNP 145369 to 145969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:23,252 DEBUG Processing 276/710 atomic regions from SNP 82503 to 83103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,335 DEBUG Processing 486/637 atomic regions from SNP 145669 to 146269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:23,489 DEBUG Processing 277/710 atomic regions from SNP 82803 to 83403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,547 DEBUG Processing 487/637 atomic regions from SNP 145969 to 146569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:23,729 DEBUG Processing 278/710 atomic regions from SNP 83103 to 83703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,760 DEBUG Processing 488/637 atomic regions from SNP 146269 to 146869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:23,822 DEBUG Segmenting atomic regions: 2025-01-31 09:51:23,919 DEBUG Processing 1/705 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:23,974 DEBUG Processing 279/710 atomic regions from SNP 83403 to 84003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:23,977 DEBUG Processing 489/637 atomic regions from SNP 146569 to 147169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:24,192 DEBUG Processing 2/705 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,194 DEBUG Processing 490/637 atomic regions from SNP 146869 to 147469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:24,229 DEBUG Processing 280/710 atomic regions from SNP 83703 to 84303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,410 DEBUG Processing 491/637 atomic regions from SNP 147169 to 147769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:24,440 DEBUG Processing 3/705 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,481 DEBUG Processing 281/710 atomic regions from SNP 84003 to 84603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,623 DEBUG Processing 492/637 atomic regions from SNP 147469 to 148069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:24,681 DEBUG Processing 4/705 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,725 DEBUG Processing 282/710 atomic regions from SNP 84303 to 84903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:24,843 DEBUG Processing 493/637 atomic regions from SNP 147769 to 148369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:24,915 DEBUG Processing 5/705 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:24,969 DEBUG Processing 283/710 atomic regions from SNP 84603 to 85203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,065 DEBUG Processing 494/637 atomic regions from SNP 148069 to 148669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:25,150 DEBUG Processing 6/705 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,214 DEBUG Processing 284/710 atomic regions from SNP 84903 to 85503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,289 DEBUG Processing 495/637 atomic regions from SNP 148369 to 148969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:25,418 DEBUG Processing 7/705 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,466 DEBUG Processing 285/710 atomic regions from SNP 85203 to 85803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,505 DEBUG Processing 496/637 atomic regions from SNP 148669 to 149269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:25,671 DEBUG Processing 8/705 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,712 DEBUG Processing 286/710 atomic regions from SNP 85503 to 86103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:25,718 DEBUG Processing 497/637 atomic regions from SNP 148969 to 149569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:25,909 DEBUG Processing 9/705 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:25,929 DEBUG Processing 498/637 atomic regions from SNP 149269 to 149869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:25,956 DEBUG Processing 287/710 atomic regions from SNP 85803 to 86403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,152 DEBUG Processing 10/705 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,179 DEBUG Processing 499/637 atomic regions from SNP 149569 to 150169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:26,210 DEBUG Processing 288/710 atomic regions from SNP 86103 to 86703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,399 DEBUG Processing 500/637 atomic regions from SNP 149869 to 150469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:26,410 DEBUG Processing 11/705 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,466 DEBUG Processing 289/710 atomic regions from SNP 86403 to 87003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,617 DEBUG Processing 501/637 atomic regions from SNP 150169 to 150769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:26,668 DEBUG Processing 12/705 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,705 DEBUG Processing 290/710 atomic regions from SNP 86703 to 87303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:26,837 DEBUG Processing 502/637 atomic regions from SNP 150469 to 151069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:26,934 DEBUG Processing 13/705 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:26,945 DEBUG Processing 291/710 atomic regions from SNP 87003 to 87603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,053 DEBUG Processing 503/637 atomic regions from SNP 150769 to 151369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:27,184 DEBUG Processing 14/705 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,188 DEBUG Processing 292/710 atomic regions from SNP 87303 to 87903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,269 DEBUG Processing 504/637 atomic regions from SNP 151069 to 151669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:27,422 DEBUG Processing 15/705 atomic regions from SNP 4214 to 4814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,439 DEBUG Processing 293/710 atomic regions from SNP 87603 to 88203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,493 DEBUG Processing 505/637 atomic regions from SNP 151369 to 151969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:27,657 DEBUG Processing 16/705 atomic regions from SNP 4514 to 5114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,682 DEBUG Processing 294/710 atomic regions from SNP 87903 to 88503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:27,702 DEBUG Processing 506/637 atomic regions from SNP 151669 to 152269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:27,890 DEBUG Processing 17/705 atomic regions from SNP 4814 to 5414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:27,915 DEBUG Processing 507/637 atomic regions from SNP 151969 to 152569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:27,918 DEBUG Processing 295/710 atomic regions from SNP 88203 to 88803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,136 DEBUG Processing 508/637 atomic regions from SNP 152269 to 152869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:28,147 DEBUG Processing 18/705 atomic regions from SNP 5114 to 5714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,184 DEBUG Processing 296/710 atomic regions from SNP 88503 to 89103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,361 DEBUG Processing 509/637 atomic regions from SNP 152569 to 153169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:28,399 DEBUG Processing 19/705 atomic regions from SNP 5414 to 6014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,439 DEBUG Processing 297/710 atomic regions from SNP 88803 to 89403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,583 DEBUG Processing 510/637 atomic regions from SNP 152869 to 153469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:28,641 DEBUG Processing 20/705 atomic regions from SNP 5714 to 6314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,677 DEBUG Processing 298/710 atomic regions from SNP 89103 to 89703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:28,805 DEBUG Processing 511/637 atomic regions from SNP 153169 to 153769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:28,908 DEBUG Processing 21/705 atomic regions from SNP 6014 to 6614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:28,922 DEBUG Processing 299/710 atomic regions from SNP 89403 to 90003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,019 DEBUG Processing 512/637 atomic regions from SNP 153469 to 154069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:29,167 DEBUG Processing 300/710 atomic regions from SNP 89703 to 90303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,171 DEBUG Processing 22/705 atomic regions from SNP 6314 to 6914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,228 DEBUG Processing 513/637 atomic regions from SNP 153769 to 154369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:29,416 DEBUG Processing 301/710 atomic regions from SNP 90003 to 90603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,420 DEBUG Processing 23/705 atomic regions from SNP 6614 to 7214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,442 DEBUG Processing 514/637 atomic regions from SNP 154069 to 154669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:29,662 DEBUG Processing 515/637 atomic regions from SNP 154369 to 154969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:29,665 DEBUG Processing 24/705 atomic regions from SNP 6914 to 7514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,668 DEBUG Processing 302/710 atomic regions from SNP 90303 to 90903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:29,883 DEBUG Processing 516/637 atomic regions from SNP 154669 to 155269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:29,903 DEBUG Processing 25/705 atomic regions from SNP 7214 to 7814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:29,917 DEBUG Processing 303/710 atomic regions from SNP 90603 to 91203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,098 DEBUG Processing 517/637 atomic regions from SNP 154969 to 155569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:30,137 DEBUG Processing 26/705 atomic regions from SNP 7514 to 8114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,160 DEBUG Processing 304/710 atomic regions from SNP 90903 to 91503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,312 DEBUG Processing 518/637 atomic regions from SNP 155269 to 155869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:30,367 DEBUG Processing 27/705 atomic regions from SNP 7814 to 8414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,401 DEBUG Processing 305/710 atomic regions from SNP 91203 to 91803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,526 DEBUG Processing 519/637 atomic regions from SNP 155569 to 156169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:30,603 DEBUG Processing 28/705 atomic regions from SNP 8114 to 8714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,642 DEBUG Processing 306/710 atomic regions from SNP 91503 to 92103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,738 DEBUG Processing 520/637 atomic regions from SNP 155869 to 156469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:30,840 DEBUG Processing 29/705 atomic regions from SNP 8414 to 9014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:30,888 DEBUG Processing 307/710 atomic regions from SNP 91803 to 92403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:30,949 DEBUG Processing 521/637 atomic regions from SNP 156169 to 156769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:31,076 DEBUG Processing 30/705 atomic regions from SNP 8714 to 9314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,151 DEBUG Processing 308/710 atomic regions from SNP 92103 to 92703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,184 DEBUG Processing 522/637 atomic regions from SNP 156469 to 157069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:31,316 DEBUG Processing 31/705 atomic regions from SNP 9014 to 9614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,399 DEBUG Processing 309/710 atomic regions from SNP 92403 to 93003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,402 DEBUG Processing 523/637 atomic regions from SNP 156769 to 157369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:31,551 DEBUG Processing 32/705 atomic regions from SNP 9314 to 9914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,625 DEBUG Processing 524/637 atomic regions from SNP 157069 to 157669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:31,658 DEBUG Processing 310/710 atomic regions from SNP 92703 to 93303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:31,781 DEBUG Processing 33/705 atomic regions from SNP 9614 to 10214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:31,845 DEBUG Processing 525/637 atomic regions from SNP 157369 to 157969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:31,939 DEBUG Processing 311/710 atomic regions from SNP 93003 to 93603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,018 DEBUG Processing 34/705 atomic regions from SNP 9914 to 10514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,063 DEBUG Processing 526/637 atomic regions from SNP 157669 to 158269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:32,219 DEBUG Processing 312/710 atomic regions from SNP 93303 to 93903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,255 DEBUG Processing 35/705 atomic regions from SNP 10214 to 10814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,270 DEBUG Processing 527/637 atomic regions from SNP 157969 to 158569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:32,473 DEBUG Processing 313/710 atomic regions from SNP 93603 to 94203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,476 DEBUG Processing 528/637 atomic regions from SNP 158269 to 158869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:32,492 DEBUG Processing 36/705 atomic regions from SNP 10514 to 11114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,688 DEBUG Processing 529/637 atomic regions from SNP 158569 to 159169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:32,735 DEBUG Processing 37/705 atomic regions from SNP 10814 to 11414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:32,740 DEBUG Processing 314/710 atomic regions from SNP 93903 to 94503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:32,894 DEBUG Processing 530/637 atomic regions from SNP 158869 to 159469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:32,971 DEBUG Processing 38/705 atomic regions from SNP 11114 to 11714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,014 DEBUG Processing 315/710 atomic regions from SNP 94203 to 94803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,103 DEBUG Processing 531/637 atomic regions from SNP 159169 to 159769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:33,209 DEBUG Processing 39/705 atomic regions from SNP 11414 to 12014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,285 DEBUG Processing 316/710 atomic regions from SNP 94503 to 95103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,313 DEBUG Processing 532/637 atomic regions from SNP 159469 to 160069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:33,440 DEBUG Processing 40/705 atomic regions from SNP 11714 to 12314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,526 DEBUG Processing 533/637 atomic regions from SNP 159769 to 160369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:33,553 DEBUG Processing 317/710 atomic regions from SNP 94803 to 95403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,679 DEBUG Processing 41/705 atomic regions from SNP 12014 to 12614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,737 DEBUG Processing 534/637 atomic regions from SNP 160069 to 160669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:33,804 DEBUG Processing 318/710 atomic regions from SNP 95103 to 95703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:33,916 DEBUG Processing 42/705 atomic regions from SNP 12314 to 12914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:33,948 DEBUG Processing 535/637 atomic regions from SNP 160369 to 160969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:34,082 DEBUG Processing 319/710 atomic regions from SNP 95403 to 96003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,157 DEBUG Processing 43/705 atomic regions from SNP 12614 to 13214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,169 DEBUG Processing 536/637 atomic regions from SNP 160669 to 161269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:34,352 DEBUG Processing 320/710 atomic regions from SNP 95703 to 96303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,398 DEBUG Processing 44/705 atomic regions from SNP 12914 to 13514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,399 DEBUG Processing 537/637 atomic regions from SNP 160969 to 161569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:34,648 DEBUG Processing 321/710 atomic regions from SNP 96003 to 96603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:34,653 DEBUG Processing 538/637 atomic regions from SNP 161269 to 161869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:34,661 DEBUG Processing 45/705 atomic regions from SNP 13214 to 13814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,918 DEBUG Processing 539/637 atomic regions from SNP 161569 to 162169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:34,937 DEBUG Processing 46/705 atomic regions from SNP 13514 to 14114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:34,943 DEBUG Processing 322/710 atomic regions from SNP 96303 to 96903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,144 DEBUG Processing 540/637 atomic regions from SNP 161869 to 162469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:35,176 DEBUG Processing 47/705 atomic regions from SNP 13814 to 14414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,193 DEBUG Processing 323/710 atomic regions from SNP 96603 to 97203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,362 DEBUG Processing 541/637 atomic regions from SNP 162169 to 162769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:35,413 DEBUG Processing 48/705 atomic regions from SNP 14114 to 14714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,446 DEBUG Processing 324/710 atomic regions from SNP 96903 to 97503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,576 DEBUG Processing 542/637 atomic regions from SNP 162469 to 163069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:35,655 DEBUG Processing 49/705 atomic regions from SNP 14414 to 15014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,709 DEBUG Processing 325/710 atomic regions from SNP 97203 to 97803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:35,789 DEBUG Processing 543/637 atomic regions from SNP 162769 to 163369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:35,901 DEBUG Processing 50/705 atomic regions from SNP 14714 to 15314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:35,964 DEBUG Processing 326/710 atomic regions from SNP 97503 to 98103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,001 DEBUG Processing 544/637 atomic regions from SNP 163069 to 163669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:36,154 DEBUG Processing 51/705 atomic regions from SNP 15014 to 15614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,227 DEBUG Processing 545/637 atomic regions from SNP 163369 to 163969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:36,243 DEBUG Processing 327/710 atomic regions from SNP 97803 to 98403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,399 DEBUG Processing 52/705 atomic regions from SNP 15314 to 15914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,445 DEBUG Processing 546/637 atomic regions from SNP 163669 to 164269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:36,519 DEBUG Processing 328/710 atomic regions from SNP 98103 to 98703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,633 DEBUG Processing 53/705 atomic regions from SNP 15614 to 16214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,671 DEBUG Processing 547/637 atomic regions from SNP 163969 to 164569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:36,755 DEBUG Processing 329/710 atomic regions from SNP 98403 to 99003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:36,864 DEBUG Processing 54/705 atomic regions from SNP 15914 to 16514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:36,895 DEBUG Processing 548/637 atomic regions from SNP 164269 to 164869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:36,990 DEBUG Processing 330/710 atomic regions from SNP 98703 to 99303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,091 DEBUG Processing 55/705 atomic regions from SNP 16214 to 16814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,120 DEBUG Processing 549/637 atomic regions from SNP 164569 to 165169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:37,234 DEBUG Processing 331/710 atomic regions from SNP 99003 to 99603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,337 DEBUG Processing 56/705 atomic regions from SNP 16514 to 17114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,342 DEBUG Processing 550/637 atomic regions from SNP 164869 to 165469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:37,480 DEBUG Processing 332/710 atomic regions from SNP 99303 to 99903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,565 DEBUG Processing 57/705 atomic regions from SNP 16814 to 17414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,566 DEBUG Processing 551/637 atomic regions from SNP 165169 to 165769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:37,721 DEBUG Processing 333/710 atomic regions from SNP 99603 to 100203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:37,793 DEBUG Processing 552/637 atomic regions from SNP 165469 to 166069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:37,799 DEBUG Processing 58/705 atomic regions from SNP 17114 to 17714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:37,968 DEBUG Processing 334/710 atomic regions from SNP 99903 to 100503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,029 DEBUG Processing 553/637 atomic regions from SNP 165769 to 166369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:38,045 DEBUG Processing 59/705 atomic regions from SNP 17414 to 18014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,202 DEBUG Processing 335/710 atomic regions from SNP 100203 to 100803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,255 DEBUG Processing 554/637 atomic regions from SNP 166069 to 166669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:38,280 DEBUG Processing 60/705 atomic regions from SNP 17714 to 18314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,440 DEBUG Processing 336/710 atomic regions from SNP 100503 to 101103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,474 DEBUG Processing 555/637 atomic regions from SNP 166369 to 166969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:38,515 DEBUG Processing 61/705 atomic regions from SNP 18014 to 18614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,664 DEBUG Processing 337/710 atomic regions from SNP 100803 to 101403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,693 DEBUG Processing 556/637 atomic regions from SNP 166669 to 167269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:38,741 DEBUG Processing 62/705 atomic regions from SNP 18314 to 18914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:38,897 DEBUG Processing 338/710 atomic regions from SNP 101103 to 101703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:38,907 DEBUG Processing 557/637 atomic regions from SNP 166969 to 167569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:38,964 DEBUG Processing 63/705 atomic regions from SNP 18614 to 19214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,126 DEBUG Processing 339/710 atomic regions from SNP 101403 to 102003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,129 DEBUG Processing 558/637 atomic regions from SNP 167269 to 167869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:39,190 DEBUG Processing 64/705 atomic regions from SNP 18914 to 19514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,354 DEBUG Processing 559/637 atomic regions from SNP 167569 to 168169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:39,359 DEBUG Processing 340/710 atomic regions from SNP 101703 to 102303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,416 DEBUG Processing 65/705 atomic regions from SNP 19214 to 19814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,585 DEBUG Processing 560/637 atomic regions from SNP 167869 to 168469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:39,594 DEBUG Processing 341/710 atomic regions from SNP 102003 to 102603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,653 DEBUG Processing 66/705 atomic regions from SNP 19514 to 20114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:39,813 DEBUG Processing 561/637 atomic regions from SNP 168169 to 168769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:39,827 DEBUG Processing 342/710 atomic regions from SNP 102303 to 102903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:39,886 DEBUG Processing 67/705 atomic regions from SNP 19814 to 20414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,034 DEBUG Processing 562/637 atomic regions from SNP 168469 to 169069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:40,054 DEBUG Processing 343/710 atomic regions from SNP 102603 to 103203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,118 DEBUG Processing 68/705 atomic regions from SNP 20114 to 20714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,232 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:51:40,254 DEBUG Processing 563/637 atomic regions from SNP 168769 to 169369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:40,279 DEBUG Processing 344/710 atomic regions from SNP 102903 to 103503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,342 DEBUG Processing 69/705 atomic regions from SNP 20414 to 21014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,479 DEBUG Processing 564/637 atomic regions from SNP 169069 to 169669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:40,537 DEBUG Processing 345/710 atomic regions from SNP 103203 to 103803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,570 DEBUG Processing 70/705 atomic regions from SNP 20714 to 21314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,709 DEBUG Processing 565/637 atomic regions from SNP 169369 to 169969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:40,777 DEBUG Processing 346/710 atomic regions from SNP 103503 to 104103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:40,798 DEBUG Processing 71/705 atomic regions from SNP 21014 to 21614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:40,938 DEBUG Processing 566/637 atomic regions from SNP 169669 to 170269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:41,019 DEBUG Processing 347/710 atomic regions from SNP 103803 to 104403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,020 DEBUG Processing 72/705 atomic regions from SNP 21314 to 21914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,171 DEBUG Processing 567/637 atomic regions from SNP 169969 to 170569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:41,250 DEBUG Processing 73/705 atomic regions from SNP 21614 to 22214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,286 DEBUG Processing 348/710 atomic regions from SNP 104103 to 104703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,407 DEBUG Processing 568/637 atomic regions from SNP 170269 to 170869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:41,497 DEBUG Processing 74/705 atomic regions from SNP 21914 to 22514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,536 DEBUG Processing 349/710 atomic regions from SNP 104403 to 105003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,629 DEBUG Processing 569/637 atomic regions from SNP 170569 to 171169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:41,724 DEBUG Processing 75/705 atomic regions from SNP 22214 to 22814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:41,774 DEBUG Processing 350/710 atomic regions from SNP 104703 to 105303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:41,855 DEBUG Processing 570/637 atomic regions from SNP 170869 to 171469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:41,949 DEBUG Processing 76/705 atomic regions from SNP 22514 to 23114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,017 DEBUG Processing 351/710 atomic regions from SNP 105003 to 105603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,080 DEBUG Processing 571/637 atomic regions from SNP 171169 to 171769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:42,179 DEBUG Processing 77/705 atomic regions from SNP 22814 to 23414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,256 DEBUG Processing 352/710 atomic regions from SNP 105303 to 105903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,296 DEBUG Processing 572/637 atomic regions from SNP 171469 to 172069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:42,407 DEBUG Processing 78/705 atomic regions from SNP 23114 to 23714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,507 DEBUG Processing 353/710 atomic regions from SNP 105603 to 106203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,518 DEBUG Processing 573/637 atomic regions from SNP 171769 to 172369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:42,638 DEBUG Processing 79/705 atomic regions from SNP 23414 to 24014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,738 DEBUG Processing 574/637 atomic regions from SNP 172069 to 172669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:42,766 DEBUG Processing 354/710 atomic regions from SNP 105903 to 106503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:42,869 DEBUG Processing 80/705 atomic regions from SNP 23714 to 24314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:42,969 DEBUG Processing 575/637 atomic regions from SNP 172369 to 172969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:43,039 DEBUG Processing 355/710 atomic regions from SNP 106203 to 106803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,104 DEBUG Processing 81/705 atomic regions from SNP 24014 to 24614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,198 DEBUG Processing 576/637 atomic regions from SNP 172669 to 173269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:43,319 DEBUG Processing 356/710 atomic regions from SNP 106503 to 107103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,333 DEBUG Processing 82/705 atomic regions from SNP 24314 to 24914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,426 DEBUG Processing 577/637 atomic regions from SNP 172969 to 173569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:43,567 DEBUG Processing 83/705 atomic regions from SNP 24614 to 25214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,579 DEBUG Processing 357/710 atomic regions from SNP 106803 to 107403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,659 DEBUG Processing 578/637 atomic regions from SNP 173269 to 173869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:43,806 DEBUG Processing 84/705 atomic regions from SNP 24914 to 25514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:43,825 DEBUG Processing 358/710 atomic regions from SNP 107103 to 107703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:43,890 DEBUG Processing 579/637 atomic regions from SNP 173569 to 174169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:44,041 DEBUG Processing 85/705 atomic regions from SNP 25214 to 25814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,080 DEBUG Processing 359/710 atomic regions from SNP 107403 to 108003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,118 DEBUG Processing 580/637 atomic regions from SNP 173869 to 174469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:44,281 DEBUG Processing 86/705 atomic regions from SNP 25514 to 26114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,336 DEBUG Processing 581/637 atomic regions from SNP 174169 to 174769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:44,341 DEBUG Processing 360/710 atomic regions from SNP 107703 to 108303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,517 DEBUG Processing 87/705 atomic regions from SNP 25814 to 26414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,560 DEBUG Processing 582/637 atomic regions from SNP 174469 to 175069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:44,594 DEBUG Processing 361/710 atomic regions from SNP 108003 to 108603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,672 DEBUG Segmenting atomic regions: 2025-01-31 09:51:44,746 DEBUG Processing 88/705 atomic regions from SNP 26114 to 26714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,763 DEBUG Processing 1/664 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:44,784 DEBUG Processing 583/637 atomic regions from SNP 174769 to 175369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:44,853 DEBUG Processing 362/710 atomic regions from SNP 108303 to 108903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:44,980 DEBUG Processing 89/705 atomic regions from SNP 26414 to 27014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:44,999 DEBUG Processing 2/664 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,026 DEBUG Processing 584/637 atomic regions from SNP 175069 to 175669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:45,136 DEBUG Processing 363/710 atomic regions from SNP 108603 to 109203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,220 DEBUG Processing 90/705 atomic regions from SNP 26714 to 27314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,233 DEBUG Processing 3/664 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,265 DEBUG Processing 585/637 atomic regions from SNP 175369 to 175969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:45,396 DEBUG Processing 364/710 atomic regions from SNP 108903 to 109503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,452 DEBUG Processing 91/705 atomic regions from SNP 27014 to 27614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,461 DEBUG Processing 4/664 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,500 DEBUG Processing 586/637 atomic regions from SNP 175669 to 176269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:45,682 DEBUG Processing 365/710 atomic regions from SNP 109203 to 109803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,690 DEBUG Processing 5/664 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,697 DEBUG Processing 92/705 atomic regions from SNP 27314 to 27914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,730 DEBUG Processing 587/637 atomic regions from SNP 175969 to 176569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:45,918 DEBUG Processing 6/664 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:45,939 DEBUG Processing 93/705 atomic regions from SNP 27614 to 28214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:45,949 DEBUG Processing 366/710 atomic regions from SNP 109503 to 110103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:45,962 DEBUG Processing 588/637 atomic regions from SNP 176269 to 176869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:46,141 DEBUG Processing 7/664 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,175 DEBUG Processing 94/705 atomic regions from SNP 27914 to 28514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,189 DEBUG Processing 589/637 atomic regions from SNP 176569 to 177169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:46,207 DEBUG Processing 367/710 atomic regions from SNP 109803 to 110403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,364 DEBUG Processing 8/664 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,411 DEBUG Processing 95/705 atomic regions from SNP 28214 to 28814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,416 DEBUG Processing 590/637 atomic regions from SNP 176869 to 177469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:46,466 DEBUG Processing 368/710 atomic regions from SNP 110103 to 110703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,591 DEBUG Processing 9/664 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,646 DEBUG Processing 591/637 atomic regions from SNP 177169 to 177769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:46,649 DEBUG Processing 96/705 atomic regions from SNP 28514 to 29114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,736 DEBUG Processing 369/710 atomic regions from SNP 110403 to 111003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:46,815 DEBUG Processing 10/664 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:46,871 DEBUG Processing 592/637 atomic regions from SNP 177469 to 178069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:46,878 DEBUG Processing 97/705 atomic regions from SNP 28814 to 29414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:46,979 DEBUG Processing 370/710 atomic regions from SNP 110703 to 111303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,048 DEBUG Processing 11/664 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,101 DEBUG Processing 593/637 atomic regions from SNP 177769 to 178369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:47,122 DEBUG Processing 98/705 atomic regions from SNP 29114 to 29714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,215 DEBUG Processing 371/710 atomic regions from SNP 111003 to 111603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,278 DEBUG Processing 12/664 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,333 DEBUG Processing 594/637 atomic regions from SNP 178069 to 178669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:47,368 DEBUG Processing 99/705 atomic regions from SNP 29414 to 30014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,459 DEBUG Processing 372/710 atomic regions from SNP 111303 to 111903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,502 DEBUG Processing 13/664 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,564 DEBUG Processing 595/637 atomic regions from SNP 178369 to 178969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:47,602 DEBUG Processing 100/705 atomic regions from SNP 29714 to 30314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,695 DEBUG Processing 373/710 atomic regions from SNP 111603 to 112203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,729 DEBUG Processing 14/664 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:47,793 DEBUG Processing 596/637 atomic regions from SNP 178669 to 179269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:47,836 DEBUG Processing 101/705 atomic regions from SNP 30014 to 30614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:47,949 DEBUG Processing 374/710 atomic regions from SNP 111903 to 112503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:47,952 DEBUG Processing 15/664 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,023 DEBUG Processing 597/637 atomic regions from SNP 178969 to 179569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:48,067 DEBUG Processing 102/705 atomic regions from SNP 30314 to 30914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,173 DEBUG Processing 16/664 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,191 DEBUG Processing 375/710 atomic regions from SNP 112203 to 112803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,248 DEBUG Processing 598/637 atomic regions from SNP 179269 to 179869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:48,297 DEBUG Processing 103/705 atomic regions from SNP 30614 to 31214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,398 DEBUG Processing 17/664 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,431 DEBUG Processing 376/710 atomic regions from SNP 112503 to 113103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,471 DEBUG Processing 599/637 atomic regions from SNP 179569 to 180169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:48,545 DEBUG Processing 104/705 atomic regions from SNP 30914 to 31514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,631 DEBUG Processing 18/664 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,674 DEBUG Processing 377/710 atomic regions from SNP 112803 to 113403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,697 DEBUG Processing 600/637 atomic regions from SNP 179869 to 180469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:48,771 DEBUG Processing 105/705 atomic regions from SNP 31214 to 31814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:48,865 DEBUG Processing 19/664 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:48,922 DEBUG Processing 378/710 atomic regions from SNP 113103 to 113703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:48,927 DEBUG Processing 601/637 atomic regions from SNP 180169 to 180769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:48,998 DEBUG Processing 106/705 atomic regions from SNP 31514 to 32114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,099 DEBUG Processing 20/664 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,157 DEBUG Processing 602/637 atomic regions from SNP 180469 to 181069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:49,165 DEBUG Processing 379/710 atomic regions from SNP 113403 to 114003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,227 DEBUG Processing 107/705 atomic regions from SNP 31814 to 32414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,332 DEBUG Processing 21/664 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,391 DEBUG Processing 603/637 atomic regions from SNP 180769 to 181369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:49,408 DEBUG Processing 380/710 atomic regions from SNP 113703 to 114303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,461 DEBUG Processing 108/705 atomic regions from SNP 32114 to 32714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,568 DEBUG Processing 22/664 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,623 DEBUG Processing 604/637 atomic regions from SNP 181069 to 181669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:49,657 DEBUG Processing 381/710 atomic regions from SNP 114003 to 114603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,707 DEBUG Processing 109/705 atomic regions from SNP 32414 to 33014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:49,800 DEBUG Processing 23/664 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:49,860 DEBUG Processing 605/637 atomic regions from SNP 181369 to 181969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:49,906 DEBUG Processing 382/710 atomic regions from SNP 114303 to 114903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:49,945 DEBUG Processing 110/705 atomic regions from SNP 32714 to 33314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,024 DEBUG Processing 24/664 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,091 DEBUG Processing 606/637 atomic regions from SNP 181669 to 182269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:50,155 DEBUG Processing 383/710 atomic regions from SNP 114603 to 115203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,196 DEBUG Processing 111/705 atomic regions from SNP 33014 to 33614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,248 DEBUG Processing 25/664 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,316 DEBUG Processing 607/637 atomic regions from SNP 181969 to 182569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:50,402 DEBUG Processing 384/710 atomic regions from SNP 114903 to 115503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,464 DEBUG Processing 112/705 atomic regions from SNP 33314 to 33914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,480 DEBUG Processing 26/664 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,548 DEBUG Processing 608/637 atomic regions from SNP 182269 to 182869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:50,649 DEBUG Processing 385/710 atomic regions from SNP 115203 to 115803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,714 DEBUG Processing 27/664 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,732 DEBUG Processing 113/705 atomic regions from SNP 33614 to 34214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:50,781 DEBUG Processing 609/637 atomic regions from SNP 182569 to 183169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:50,890 DEBUG Processing 386/710 atomic regions from SNP 115503 to 116103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:50,949 DEBUG Processing 28/664 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:50,976 DEBUG Processing 114/705 atomic regions from SNP 33914 to 34514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,011 DEBUG Processing 610/637 atomic regions from SNP 182869 to 183469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:51,129 DEBUG Processing 387/710 atomic regions from SNP 115803 to 116403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,179 DEBUG Processing 29/664 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,221 DEBUG Processing 115/705 atomic regions from SNP 34214 to 34814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,244 DEBUG Processing 611/637 atomic regions from SNP 183169 to 183769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:51,374 DEBUG Processing 388/710 atomic regions from SNP 116103 to 116703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,412 DEBUG Processing 30/664 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,469 DEBUG Processing 116/705 atomic regions from SNP 34514 to 35114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,479 DEBUG Processing 612/637 atomic regions from SNP 183469 to 184069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:51,625 DEBUG Processing 389/710 atomic regions from SNP 116403 to 117003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,643 DEBUG Processing 31/664 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,718 DEBUG Processing 613/637 atomic regions from SNP 183769 to 184369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:51,719 DEBUG Processing 117/705 atomic regions from SNP 34814 to 35414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:51,872 DEBUG Processing 32/664 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:51,875 DEBUG Processing 390/710 atomic regions from SNP 116703 to 117303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:51,954 DEBUG Processing 614/637 atomic regions from SNP 184069 to 184669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:51,966 DEBUG Processing 118/705 atomic regions from SNP 35114 to 35714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,097 DEBUG Processing 33/664 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,121 DEBUG Processing 391/710 atomic regions from SNP 117003 to 117603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,195 DEBUG Processing 615/637 atomic regions from SNP 184369 to 184969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:52,214 DEBUG Processing 119/705 atomic regions from SNP 35414 to 36014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,319 DEBUG Processing 34/664 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,371 DEBUG Processing 392/710 atomic regions from SNP 117303 to 117903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,430 DEBUG Processing 616/637 atomic regions from SNP 184669 to 185269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:52,468 DEBUG Processing 120/705 atomic regions from SNP 35714 to 36314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,558 DEBUG Processing 35/664 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,629 DEBUG Processing 393/710 atomic regions from SNP 117603 to 118203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,649 DEBUG Processing 617/637 atomic regions from SNP 184969 to 185569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:52,712 DEBUG Processing 121/705 atomic regions from SNP 36014 to 36614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:52,792 DEBUG Processing 36/664 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:52,864 DEBUG Processing 618/637 atomic regions from SNP 185269 to 185869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:52,878 DEBUG Processing 394/710 atomic regions from SNP 117903 to 118503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:52,952 DEBUG Processing 122/705 atomic regions from SNP 36314 to 36914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,020 DEBUG Processing 37/664 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,086 DEBUG Processing 619/637 atomic regions from SNP 185569 to 186169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:53,124 DEBUG Processing 395/710 atomic regions from SNP 118203 to 118803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,191 DEBUG Processing 123/705 atomic regions from SNP 36614 to 37214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,254 DEBUG Processing 38/664 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,341 DEBUG Processing 620/637 atomic regions from SNP 185869 to 186469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:53,364 DEBUG Processing 396/710 atomic regions from SNP 118503 to 119103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,431 DEBUG Processing 124/705 atomic regions from SNP 36914 to 37514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,485 DEBUG Processing 39/664 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,584 DEBUG Processing 621/637 atomic regions from SNP 186169 to 186769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:53,626 DEBUG Processing 397/710 atomic regions from SNP 118803 to 119403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,645 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:51:53,646 DEBUG chr12: Signal quantile: 0.993. signal threshold: 11. Best RMSEA: 0.020 2025-01-31 09:51:53,708 DEBUG Processing 125/705 atomic regions from SNP 37214 to 37814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:53,727 DEBUG Processing 40/664 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,836 DEBUG Processing 622/637 atomic regions from SNP 186469 to 187069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:53,884 DEBUG Processing 398/710 atomic regions from SNP 119103 to 119703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:53,941 DEBUG Processing 41/664 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:53,948 DEBUG Processing 126/705 atomic regions from SNP 37514 to 38114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,097 DEBUG Processing 623/637 atomic regions from SNP 186769 to 187369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:54,135 DEBUG Processing 399/710 atomic regions from SNP 119403 to 120003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,159 DEBUG Processing 42/664 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,192 DEBUG Processing 127/705 atomic regions from SNP 37814 to 38414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,348 DEBUG Processing 624/637 atomic regions from SNP 187069 to 187669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:54,379 DEBUG Processing 43/664 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,381 DEBUG Processing 400/710 atomic regions from SNP 119703 to 120303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,438 DEBUG Processing 128/705 atomic regions from SNP 38114 to 38714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,605 DEBUG Processing 625/637 atomic regions from SNP 187369 to 187969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:54,605 DEBUG Processing 44/664 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,628 DEBUG Processing 401/710 atomic regions from SNP 120003 to 120603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,684 DEBUG Processing 129/705 atomic regions from SNP 38414 to 39014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:54,839 DEBUG Processing 45/664 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:54,840 DEBUG Processing 626/637 atomic regions from SNP 187669 to 188269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:54,880 DEBUG Processing 402/710 atomic regions from SNP 120303 to 120903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:54,933 DEBUG Processing 130/705 atomic regions from SNP 38714 to 39314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,070 DEBUG Processing 46/664 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,074 DEBUG Processing 627/637 atomic regions from SNP 187969 to 188569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:55,134 DEBUG Processing 403/710 atomic regions from SNP 120603 to 121203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,186 DEBUG Processing 131/705 atomic regions from SNP 39014 to 39614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,301 DEBUG Processing 47/664 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,309 DEBUG Processing 628/637 atomic regions from SNP 188269 to 188869 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:55,383 DEBUG Processing 404/710 atomic regions from SNP 120903 to 121503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,434 DEBUG Processing 132/705 atomic regions from SNP 39314 to 39914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,533 DEBUG Processing 48/664 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,543 DEBUG Processing 629/637 atomic regions from SNP 188569 to 189169 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:55,626 DEBUG Processing 405/710 atomic regions from SNP 121203 to 121803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,676 DEBUG Processing 133/705 atomic regions from SNP 39614 to 40214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,764 DEBUG Processing 49/664 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:55,778 DEBUG Processing 630/637 atomic regions from SNP 188869 to 189469 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:55,864 DEBUG Processing 406/710 atomic regions from SNP 121503 to 122103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:55,917 DEBUG Processing 134/705 atomic regions from SNP 39914 to 40514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:55,938 DEBUG chr12 total SNP count: 192360 2025-01-31 09:51:55,939 DEBUG chr12 length: 120129022 2025-01-31 09:51:55,939 DEBUG ----------------------------------------- 2025-01-31 09:51:55,939 INFO Processing SNPs in chr12 2025-01-31 09:51:56,001 DEBUG Processing 50/664 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,017 DEBUG Processing 631/637 atomic regions from SNP 189169 to 189769 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:56,102 DEBUG Processing 407/710 atomic regions from SNP 121803 to 122403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,142 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 192360)] 2025-01-31 09:51:56,149 DEBUG Processing 135/705 atomic regions from SNP 40214 to 40814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,233 DEBUG Processing 51/664 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,251 DEBUG Processing 632/637 atomic regions from SNP 189469 to 190069 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:56,278 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:56,358 DEBUG Processing 408/710 atomic regions from SNP 122103 to 122703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,372 DEBUG Processing 136/705 atomic regions from SNP 40514 to 41114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,460 DEBUG Processing 52/664 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,484 DEBUG Processing 633/637 atomic regions from SNP 189769 to 190369 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:56,609 DEBUG Processing 137/705 atomic regions from SNP 40814 to 41414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,624 DEBUG Processing 409/710 atomic regions from SNP 122403 to 123003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,675 DEBUG Processing 53/664 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,707 DEBUG Processing 634/637 atomic regions from SNP 190069 to 190669 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:56,843 DEBUG Processing 138/705 atomic regions from SNP 41114 to 41714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:56,882 DEBUG Processing 410/710 atomic regions from SNP 122703 to 123303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:56,893 DEBUG Processing 54/664 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:56,926 DEBUG Processing 635/637 atomic regions from SNP 190369 to 190969 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:57,087 DEBUG Processing 139/705 atomic regions from SNP 41414 to 42014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,118 DEBUG Processing 55/664 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,131 DEBUG Processing 411/710 atomic regions from SNP 123003 to 123603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,149 DEBUG Processing 636/637 atomic regions from SNP 190669 to 191269 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:57,323 DEBUG Processing 140/705 atomic regions from SNP 41714 to 42314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,342 DEBUG Processing 56/664 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,370 DEBUG Processing 412/710 atomic regions from SNP 123303 to 123903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,372 DEBUG Processing 637/637 atomic regions from SNP 190969 to 191569 for chr14 (subchromosome 3 of 3). 2025-01-31 09:51:57,505 DEBUG Unique SNPs positions in subchromosome 3: 191570 2025-01-31 09:51:57,562 DEBUG Processing 141/705 atomic regions from SNP 42014 to 42614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,562 DEBUG Processing 57/664 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,618 DEBUG Processing 413/710 atomic regions from SNP 123603 to 124203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:57,783 DEBUG Processing 58/664 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:57,804 DEBUG Processing 142/705 atomic regions from SNP 42314 to 42914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:57,867 DEBUG Processing 414/710 atomic regions from SNP 123903 to 124503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,024 DEBUG Processing 59/664 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,041 DEBUG Processing 143/705 atomic regions from SNP 42614 to 43214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,121 DEBUG Processing 415/710 atomic regions from SNP 124203 to 124803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,243 DEBUG Processing 60/664 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,283 DEBUG Processing 144/705 atomic regions from SNP 42914 to 43514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,367 DEBUG Processing 416/710 atomic regions from SNP 124503 to 125103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,462 DEBUG Processing 61/664 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,524 DEBUG Processing 145/705 atomic regions from SNP 43214 to 43814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,624 DEBUG Processing 417/710 atomic regions from SNP 124803 to 125403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,677 DEBUG Processing 62/664 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:58,770 DEBUG Processing 146/705 atomic regions from SNP 43514 to 44114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:58,864 DEBUG Processing 418/710 atomic regions from SNP 125103 to 125703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:58,896 DEBUG Processing 63/664 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,017 DEBUG Processing 147/705 atomic regions from SNP 43814 to 44414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,107 DEBUG Processing 419/710 atomic regions from SNP 125403 to 126003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,118 DEBUG Processing 64/664 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,265 DEBUG Processing 148/705 atomic regions from SNP 44114 to 44714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,346 DEBUG Processing 65/664 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,358 DEBUG Processing 420/710 atomic regions from SNP 125703 to 126303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,515 DEBUG Processing 149/705 atomic regions from SNP 44414 to 45014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,578 DEBUG Processing 66/664 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,610 DEBUG Processing 421/710 atomic regions from SNP 126003 to 126603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,756 DEBUG Processing 150/705 atomic regions from SNP 44714 to 45314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:51:59,813 DEBUG Processing 67/664 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:51:59,865 DEBUG Processing 422/710 atomic regions from SNP 126303 to 126903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:51:59,991 DEBUG Processing 151/705 atomic regions from SNP 45014 to 45614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,039 DEBUG Processing 68/664 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,113 DEBUG Processing 423/710 atomic regions from SNP 126603 to 127203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,236 DEBUG Processing 152/705 atomic regions from SNP 45314 to 45914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,266 DEBUG Processing 69/664 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,359 DEBUG Processing 424/710 atomic regions from SNP 126903 to 127503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,476 DEBUG Processing 153/705 atomic regions from SNP 45614 to 46214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,488 DEBUG Processing 70/664 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,615 DEBUG Processing 425/710 atomic regions from SNP 127203 to 127803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,713 DEBUG Processing 71/664 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,725 DEBUG Processing 154/705 atomic regions from SNP 45914 to 46514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:00,875 DEBUG Processing 426/710 atomic regions from SNP 127503 to 128103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:00,932 DEBUG Processing 72/664 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:00,975 DEBUG Processing 155/705 atomic regions from SNP 46214 to 46814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,114 DEBUG Processing 427/710 atomic regions from SNP 127803 to 128403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,155 DEBUG Processing 73/664 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,218 DEBUG Processing 156/705 atomic regions from SNP 46514 to 47114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,354 DEBUG Processing 428/710 atomic regions from SNP 128103 to 128703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,366 DEBUG Processing 74/664 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,450 DEBUG Processing 157/705 atomic regions from SNP 46814 to 47414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,580 DEBUG Processing 75/664 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,595 DEBUG Processing 429/710 atomic regions from SNP 128403 to 129003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,682 DEBUG Processing 158/705 atomic regions from SNP 47114 to 47714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:01,796 DEBUG Processing 76/664 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:01,842 DEBUG Processing 430/710 atomic regions from SNP 128703 to 129303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:01,919 DEBUG Processing 159/705 atomic regions from SNP 47414 to 48014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,012 DEBUG Processing 77/664 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,087 DEBUG Processing 431/710 atomic regions from SNP 129003 to 129603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,157 DEBUG Processing 160/705 atomic regions from SNP 47714 to 48314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,226 DEBUG Processing 78/664 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,326 DEBUG Processing 432/710 atomic regions from SNP 129303 to 129903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,406 DEBUG Processing 161/705 atomic regions from SNP 48014 to 48614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,444 DEBUG Processing 79/664 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,565 DEBUG Processing 433/710 atomic regions from SNP 129603 to 130203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,661 DEBUG Processing 162/705 atomic regions from SNP 48314 to 48914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:02,663 DEBUG Processing 80/664 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,800 DEBUG Processing 434/710 atomic regions from SNP 129903 to 130503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:02,876 DEBUG Processing 81/664 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:02,896 DEBUG Processing 163/705 atomic regions from SNP 48614 to 49214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,038 DEBUG Processing 435/710 atomic regions from SNP 130203 to 130803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,094 DEBUG Processing 82/664 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,150 DEBUG Processing 164/705 atomic regions from SNP 48914 to 49514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,282 DEBUG Processing 436/710 atomic regions from SNP 130503 to 131103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,310 DEBUG Processing 83/664 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,406 DEBUG Processing 165/705 atomic regions from SNP 49214 to 49814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,525 DEBUG Processing 84/664 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,526 DEBUG Processing 437/710 atomic regions from SNP 130803 to 131403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,635 DEBUG Processing 166/705 atomic regions from SNP 49514 to 50114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,741 DEBUG Processing 85/664 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:03,772 DEBUG Processing 438/710 atomic regions from SNP 131103 to 131703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:03,871 DEBUG Processing 167/705 atomic regions from SNP 49814 to 50414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:03,953 DEBUG Processing 86/664 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,018 DEBUG Processing 439/710 atomic regions from SNP 131403 to 132003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,107 DEBUG Processing 168/705 atomic regions from SNP 50114 to 50714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,164 DEBUG Processing 87/664 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,277 DEBUG Processing 440/710 atomic regions from SNP 131703 to 132303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,346 DEBUG Processing 169/705 atomic regions from SNP 50414 to 51014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,377 DEBUG Processing 88/664 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,537 DEBUG Processing 441/710 atomic regions from SNP 132003 to 132603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,592 DEBUG Processing 170/705 atomic regions from SNP 50714 to 51314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:04,596 DEBUG Processing 89/664 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,805 DEBUG Processing 442/710 atomic regions from SNP 132303 to 132903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:04,818 DEBUG Processing 90/664 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:04,835 DEBUG Processing 171/705 atomic regions from SNP 51014 to 51614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,042 DEBUG Processing 91/664 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,065 DEBUG Processing 443/710 atomic regions from SNP 132603 to 133203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,077 DEBUG Processing 172/705 atomic regions from SNP 51314 to 51914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,262 DEBUG Processing 92/664 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,325 DEBUG Processing 173/705 atomic regions from SNP 51614 to 52214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,339 DEBUG Processing 444/710 atomic regions from SNP 132903 to 133503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,478 DEBUG Processing 93/664 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,572 DEBUG Processing 174/705 atomic regions from SNP 51914 to 52514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,589 DEBUG Processing 445/710 atomic regions from SNP 133203 to 133803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,692 DEBUG Processing 94/664 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:05,807 DEBUG Processing 175/705 atomic regions from SNP 52214 to 52814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:05,831 DEBUG Processing 446/710 atomic regions from SNP 133503 to 134103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:05,909 DEBUG Processing 95/664 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,042 DEBUG Processing 176/705 atomic regions from SNP 52514 to 53114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,069 DEBUG Subchromosome time: 181.51427207142115, subchromosome SNPs: 191570 2025-01-31 09:52:06,069 DEBUG Estimated BADs: [0.00, 0.22, 3.01, 0.75, 15.07, 0.75, 7.53, 3.01, 0.30, 3.01, 15.07, 1.51, 6.03, 3.01, 0.25, 1.51, 0.30, 1.51, 0.30, 0.75, 4.52, 1.51] SNP counts: [18, 100, 1896, 16608, 91, 2054, 3837, 27668, 4799, 15138, 692, 2286, 6348, 40033, 8083, 2766, 16167, 12296, 11064, 13880, 1460, 4404] SNP IDs counts: [18, 100, 1896, 16608, 91, 2054, 3837, 27668, 4799, 15138, 692, 2286, 6348, 40033, 8083, 2766, 16167, 12296, 11064, 13880, 1460, 4404] Critical gap: 631596bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 3.29Mbp[0.64Mbp], 5.09Mbp[0.75Mbp], 8.57Mbp, 18.23Mbp, 18.29Mbp, 19.70Mbp, 21.73Mbp, 37.18Mbp, 40.43Mbp, 51.98Mbp, 52.34Mbp, 54.36Mbp, 57.83Mbp, 80.23Mbp, 85.99Mbp, 87.55Mbp, 98.43Mbp, 105.55Mbp, 113.11Mbp, 121.27Mbp, 122.03Mbp, 124.90Mbp] 2025-01-31 09:52:06,069 DEBUG chr14 time: 181.51491691544652 s 2025-01-31 09:52:06,076 DEBUG Processing 447/710 atomic regions from SNP 133803 to 134403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,128 DEBUG Processing 96/664 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,204 DEBUG chr14: Fitting background model for 21 segments 2025-01-31 09:52:06,285 DEBUG Processing 177/705 atomic regions from SNP 52814 to 53414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,319 DEBUG Processing 448/710 atomic regions from SNP 134103 to 134703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,352 DEBUG Processing 97/664 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,520 DEBUG Processing 178/705 atomic regions from SNP 53114 to 53714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,556 DEBUG Processing 449/710 atomic regions from SNP 134403 to 135003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,579 DEBUG Processing 98/664 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,753 DEBUG Processing 179/705 atomic regions from SNP 53414 to 54014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:06,797 DEBUG Processing 450/710 atomic regions from SNP 134703 to 135303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:06,827 DEBUG Processing 99/664 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:06,977 DEBUG Processing 180/705 atomic regions from SNP 53714 to 54314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,037 DEBUG Processing 451/710 atomic regions from SNP 135003 to 135603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,074 DEBUG Processing 100/664 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,201 DEBUG Processing 181/705 atomic regions from SNP 54014 to 54614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,272 DEBUG Processing 452/710 atomic regions from SNP 135303 to 135903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,299 DEBUG Processing 101/664 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,427 DEBUG Processing 182/705 atomic regions from SNP 54314 to 54914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,505 DEBUG Processing 453/710 atomic regions from SNP 135603 to 136203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,537 DEBUG Processing 102/664 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,657 DEBUG Processing 183/705 atomic regions from SNP 54614 to 55214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,737 DEBUG Processing 454/710 atomic regions from SNP 135903 to 136503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:07,788 DEBUG Processing 103/664 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:07,888 DEBUG Processing 184/705 atomic regions from SNP 54914 to 55514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:07,971 DEBUG Processing 455/710 atomic regions from SNP 136203 to 136803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,041 DEBUG Processing 104/664 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,126 DEBUG Processing 185/705 atomic regions from SNP 55214 to 55814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,214 DEBUG Processing 456/710 atomic regions from SNP 136503 to 137103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,261 DEBUG Processing 105/664 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,360 DEBUG Processing 186/705 atomic regions from SNP 55514 to 56114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,452 DEBUG Processing 457/710 atomic regions from SNP 136803 to 137403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,476 DEBUG Processing 106/664 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,603 DEBUG Processing 187/705 atomic regions from SNP 55814 to 56414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,694 DEBUG Processing 107/664 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,705 DEBUG Processing 458/710 atomic regions from SNP 137103 to 137703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:08,849 DEBUG Processing 188/705 atomic regions from SNP 56114 to 56714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:08,919 DEBUG Processing 108/664 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:08,942 DEBUG Processing 459/710 atomic regions from SNP 137403 to 138003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,085 DEBUG Processing 189/705 atomic regions from SNP 56414 to 57014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,148 DEBUG Processing 109/664 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,185 DEBUG Processing 460/710 atomic regions from SNP 137703 to 138303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,331 DEBUG Processing 190/705 atomic regions from SNP 56714 to 57314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,399 DEBUG Processing 110/664 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,431 DEBUG Processing 461/710 atomic regions from SNP 138003 to 138603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,583 DEBUG Processing 191/705 atomic regions from SNP 57014 to 57614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,671 DEBUG Processing 111/664 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:09,678 DEBUG Processing 462/710 atomic regions from SNP 138303 to 138903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,832 DEBUG Processing 192/705 atomic regions from SNP 57314 to 57914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:09,918 DEBUG Processing 463/710 atomic regions from SNP 138603 to 139203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:09,932 DEBUG Processing 112/664 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,082 DEBUG Processing 193/705 atomic regions from SNP 57614 to 58214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,162 DEBUG Processing 464/710 atomic regions from SNP 138903 to 139503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,185 DEBUG Processing 113/664 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,338 DEBUG Processing 194/705 atomic regions from SNP 57914 to 58514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,407 DEBUG Processing 465/710 atomic regions from SNP 139203 to 139803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,410 DEBUG Processing 114/664 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,589 DEBUG Processing 195/705 atomic regions from SNP 58214 to 58814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,626 DEBUG Processing 115/664 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,646 DEBUG Processing 466/710 atomic regions from SNP 139503 to 140103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:10,827 DEBUG Processing 196/705 atomic regions from SNP 58514 to 59114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:10,842 DEBUG Processing 116/664 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:10,885 DEBUG Processing 467/710 atomic regions from SNP 139803 to 140403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,064 DEBUG Processing 197/705 atomic regions from SNP 58814 to 59414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,068 DEBUG Processing 117/664 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,129 DEBUG Processing 468/710 atomic regions from SNP 140103 to 140703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,294 DEBUG Processing 198/705 atomic regions from SNP 59114 to 59714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,307 DEBUG Processing 118/664 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,372 DEBUG Processing 469/710 atomic regions from SNP 140403 to 141003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,521 DEBUG Processing 199/705 atomic regions from SNP 59414 to 60014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,532 DEBUG Processing 119/664 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,612 DEBUG Processing 470/710 atomic regions from SNP 140703 to 141303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,752 DEBUG Processing 120/664 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,753 DEBUG Processing 200/705 atomic regions from SNP 59714 to 60314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:11,856 DEBUG Processing 471/710 atomic regions from SNP 141003 to 141603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:11,970 DEBUG Processing 121/664 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:11,978 DEBUG Processing 201/705 atomic regions from SNP 60014 to 60614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,096 DEBUG Processing 472/710 atomic regions from SNP 141303 to 141903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,182 DEBUG Processing 122/664 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,200 DEBUG Processing 202/705 atomic regions from SNP 60314 to 60914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,339 DEBUG Processing 473/710 atomic regions from SNP 141603 to 142203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,396 DEBUG Processing 123/664 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,427 DEBUG Processing 203/705 atomic regions from SNP 60614 to 61214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,585 DEBUG Processing 474/710 atomic regions from SNP 141903 to 142503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,615 DEBUG Processing 124/664 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,665 DEBUG Processing 204/705 atomic regions from SNP 60914 to 61514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:12,833 DEBUG Processing 475/710 atomic regions from SNP 142203 to 142803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:12,835 DEBUG Processing 125/664 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:12,906 DEBUG Processing 205/705 atomic regions from SNP 61214 to 61814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,062 DEBUG Processing 126/664 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,077 DEBUG Processing 476/710 atomic regions from SNP 142503 to 143103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,149 DEBUG Processing 206/705 atomic regions from SNP 61514 to 62114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,279 DEBUG Processing 127/664 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,320 DEBUG Processing 477/710 atomic regions from SNP 142803 to 143403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,394 DEBUG Processing 207/705 atomic regions from SNP 61814 to 62414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,494 DEBUG Processing 128/664 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,573 DEBUG Processing 478/710 atomic regions from SNP 143103 to 143703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,636 DEBUG Processing 208/705 atomic regions from SNP 62114 to 62714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,711 DEBUG Processing 129/664 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:13,813 DEBUG Processing 479/710 atomic regions from SNP 143403 to 144003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:13,882 DEBUG Processing 209/705 atomic regions from SNP 62414 to 63014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:13,933 DEBUG Processing 130/664 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,054 DEBUG Processing 480/710 atomic regions from SNP 143703 to 144303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,123 DEBUG Processing 210/705 atomic regions from SNP 62714 to 63314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,158 DEBUG Processing 131/664 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,293 DEBUG Processing 481/710 atomic regions from SNP 144003 to 144603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,364 DEBUG Processing 211/705 atomic regions from SNP 63014 to 63614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,385 DEBUG Processing 132/664 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,527 DEBUG Processing 482/710 atomic regions from SNP 144303 to 144903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,604 DEBUG Processing 212/705 atomic regions from SNP 63314 to 63914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,609 DEBUG Processing 133/664 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,763 DEBUG Processing 483/710 atomic regions from SNP 144603 to 145203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:14,828 DEBUG Processing 134/664 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:14,843 DEBUG Processing 213/705 atomic regions from SNP 63614 to 64214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:14,998 DEBUG Processing 484/710 atomic regions from SNP 144903 to 145503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,047 DEBUG Processing 135/664 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,085 DEBUG Processing 214/705 atomic regions from SNP 63914 to 64514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,233 DEBUG Processing 485/710 atomic regions from SNP 145203 to 145803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,266 DEBUG Processing 136/664 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,320 DEBUG Processing 215/705 atomic regions from SNP 64214 to 64814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,472 DEBUG Processing 486/710 atomic regions from SNP 145503 to 146103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,491 DEBUG Processing 137/664 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,556 DEBUG Processing 216/705 atomic regions from SNP 64514 to 65114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,714 DEBUG Processing 487/710 atomic regions from SNP 145803 to 146403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:15,716 DEBUG Processing 138/664 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,789 DEBUG Processing 217/705 atomic regions from SNP 64814 to 65414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:15,939 DEBUG Processing 139/664 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:15,955 DEBUG Processing 488/710 atomic regions from SNP 146103 to 146703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,023 DEBUG Processing 218/705 atomic regions from SNP 65114 to 65714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,158 DEBUG Processing 140/664 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,187 DEBUG Processing 489/710 atomic regions from SNP 146403 to 147003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,253 DEBUG Processing 219/705 atomic regions from SNP 65414 to 66014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,375 DEBUG Processing 141/664 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,420 DEBUG Processing 490/710 atomic regions from SNP 146703 to 147303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,485 DEBUG Processing 220/705 atomic regions from SNP 65714 to 66314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,591 DEBUG Processing 142/664 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,649 DEBUG Processing 491/710 atomic regions from SNP 147003 to 147603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,719 DEBUG Processing 221/705 atomic regions from SNP 66014 to 66614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:16,806 DEBUG Processing 143/664 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:16,883 DEBUG Processing 492/710 atomic regions from SNP 147303 to 147903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:16,951 DEBUG Processing 222/705 atomic regions from SNP 66314 to 66914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,024 DEBUG Processing 144/664 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,118 DEBUG Processing 493/710 atomic regions from SNP 147603 to 148203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,187 DEBUG Processing 223/705 atomic regions from SNP 66614 to 67214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,243 DEBUG Processing 145/664 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,356 DEBUG Processing 494/710 atomic regions from SNP 147903 to 148503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,424 DEBUG Processing 224/705 atomic regions from SNP 66914 to 67514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,468 DEBUG Processing 146/664 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,610 DEBUG Processing 495/710 atomic regions from SNP 148203 to 148803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,677 DEBUG Processing 225/705 atomic regions from SNP 67214 to 67814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,709 DEBUG Processing 147/664 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:17,861 DEBUG Processing 496/710 atomic regions from SNP 148503 to 149103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:17,919 DEBUG Processing 226/705 atomic regions from SNP 67514 to 68114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:17,939 DEBUG Processing 148/664 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,102 DEBUG Processing 497/710 atomic regions from SNP 148803 to 149403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,158 DEBUG Processing 149/664 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,160 DEBUG Processing 227/705 atomic regions from SNP 67814 to 68414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,342 DEBUG Processing 498/710 atomic regions from SNP 149103 to 149703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,380 DEBUG Processing 150/664 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,400 DEBUG Processing 228/705 atomic regions from SNP 68114 to 68714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,588 DEBUG Processing 499/710 atomic regions from SNP 149403 to 150003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,602 DEBUG Processing 151/664 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,644 DEBUG Processing 229/705 atomic regions from SNP 68414 to 69014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:18,824 DEBUG Processing 152/664 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:18,836 DEBUG Processing 500/710 atomic regions from SNP 149703 to 150303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:18,891 DEBUG Processing 230/705 atomic regions from SNP 68714 to 69314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,045 DEBUG Processing 153/664 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,083 DEBUG Processing 501/710 atomic regions from SNP 150003 to 150603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,133 DEBUG Processing 231/705 atomic regions from SNP 69014 to 69614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,279 DEBUG Processing 154/664 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,331 DEBUG Processing 502/710 atomic regions from SNP 150303 to 150903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,377 DEBUG Processing 232/705 atomic regions from SNP 69314 to 69914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,505 DEBUG Processing 155/664 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,573 DEBUG Processing 503/710 atomic regions from SNP 150603 to 151203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,612 DEBUG Processing 233/705 atomic regions from SNP 69614 to 70214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,732 DEBUG Processing 156/664 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:19,812 DEBUG Processing 504/710 atomic regions from SNP 150903 to 151503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:19,845 DEBUG Processing 234/705 atomic regions from SNP 69914 to 70514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:19,953 DEBUG Processing 157/664 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,049 DEBUG Processing 505/710 atomic regions from SNP 151203 to 151803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,077 DEBUG Processing 235/705 atomic regions from SNP 70214 to 70814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,175 DEBUG Processing 158/664 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,209 DEBUG Segmenting atomic regions: 2025-01-31 09:52:20,290 DEBUG Processing 506/710 atomic regions from SNP 151503 to 152103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,297 DEBUG Processing 1/640 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,313 DEBUG Processing 236/705 atomic regions from SNP 70514 to 71114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,398 DEBUG Processing 159/664 atomic regions from SNP 47558 to 48158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,517 DEBUG Processing 2/640 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,551 DEBUG Processing 507/710 atomic regions from SNP 151803 to 152403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,553 DEBUG Processing 237/705 atomic regions from SNP 70814 to 71414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,623 DEBUG Processing 160/664 atomic regions from SNP 47858 to 48458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,750 DEBUG Processing 3/640 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:20,798 DEBUG Processing 238/705 atomic regions from SNP 71114 to 71714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:20,799 DEBUG Processing 508/710 atomic regions from SNP 152103 to 152703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:20,851 DEBUG Processing 161/664 atomic regions from SNP 48158 to 48758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:20,978 DEBUG Processing 4/640 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,039 DEBUG Processing 239/705 atomic regions from SNP 71414 to 72014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,052 DEBUG Processing 509/710 atomic regions from SNP 152403 to 153003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,073 DEBUG Processing 162/664 atomic regions from SNP 48458 to 49058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,210 DEBUG Processing 5/640 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,287 DEBUG Processing 240/705 atomic regions from SNP 71714 to 72314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,305 DEBUG Processing 163/664 atomic regions from SNP 48758 to 49358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,307 DEBUG Processing 510/710 atomic regions from SNP 152703 to 153303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,435 DEBUG Processing 6/640 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,531 DEBUG Processing 164/664 atomic regions from SNP 49058 to 49658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,533 DEBUG Processing 241/705 atomic regions from SNP 72014 to 72614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,573 DEBUG Processing 511/710 atomic regions from SNP 153003 to 153603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,665 DEBUG Processing 7/640 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,752 DEBUG Processing 165/664 atomic regions from SNP 49358 to 49958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:21,767 DEBUG Processing 242/705 atomic regions from SNP 72314 to 72914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:21,818 DEBUG Processing 512/710 atomic regions from SNP 153303 to 153903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:21,891 DEBUG Processing 8/640 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:21,970 DEBUG Processing 166/664 atomic regions from SNP 49658 to 50258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,000 DEBUG Processing 243/705 atomic regions from SNP 72614 to 73214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,064 DEBUG Processing 513/710 atomic regions from SNP 153603 to 154203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,117 DEBUG Processing 9/640 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,195 DEBUG Processing 167/664 atomic regions from SNP 49958 to 50558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,237 DEBUG Processing 244/705 atomic regions from SNP 72914 to 73514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,308 DEBUG Processing 514/710 atomic regions from SNP 153903 to 154503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,345 DEBUG Processing 10/640 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,416 DEBUG Processing 168/664 atomic regions from SNP 50258 to 50858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,470 DEBUG Processing 245/705 atomic regions from SNP 73214 to 73814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,556 DEBUG Processing 515/710 atomic regions from SNP 154203 to 154803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,578 DEBUG Processing 11/640 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,641 DEBUG Processing 169/664 atomic regions from SNP 50558 to 51158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,708 DEBUG Processing 246/705 atomic regions from SNP 73514 to 74114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:22,803 DEBUG Processing 516/710 atomic regions from SNP 154503 to 155103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:22,825 DEBUG Processing 12/640 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:22,885 DEBUG Processing 170/664 atomic regions from SNP 50858 to 51458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:22,945 DEBUG Processing 247/705 atomic regions from SNP 73814 to 74414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,047 DEBUG Processing 517/710 atomic regions from SNP 154803 to 155403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,048 DEBUG Processing 13/640 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,061 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:52:23,129 DEBUG Processing 171/664 atomic regions from SNP 51158 to 51758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,184 DEBUG Processing 248/705 atomic regions from SNP 74114 to 74714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,272 DEBUG Processing 14/640 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,294 DEBUG Processing 518/710 atomic regions from SNP 155103 to 155703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,376 DEBUG Processing 172/664 atomic regions from SNP 51458 to 52058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,420 DEBUG Processing 249/705 atomic regions from SNP 74414 to 75014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,490 DEBUG Processing 15/640 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,534 DEBUG Processing 519/710 atomic regions from SNP 155403 to 156003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,609 DEBUG Processing 173/664 atomic regions from SNP 51758 to 52358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,655 DEBUG Processing 250/705 atomic regions from SNP 74714 to 75314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,710 DEBUG Processing 16/640 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:23,783 DEBUG Processing 520/710 atomic regions from SNP 155703 to 156303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:23,831 DEBUG Processing 174/664 atomic regions from SNP 52058 to 52658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:23,894 DEBUG Processing 251/705 atomic regions from SNP 75014 to 75614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:23,928 DEBUG Processing 17/640 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,053 DEBUG Processing 521/710 atomic regions from SNP 156003 to 156603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,085 DEBUG Processing 175/664 atomic regions from SNP 52358 to 52958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,160 DEBUG Processing 252/705 atomic regions from SNP 75314 to 75914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,179 DEBUG Processing 18/640 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,296 DEBUG Processing 522/710 atomic regions from SNP 156303 to 156903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,301 DEBUG Processing 176/664 atomic regions from SNP 52658 to 53258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,403 DEBUG Processing 253/705 atomic regions from SNP 75614 to 76214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,405 DEBUG Processing 19/640 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,516 DEBUG Processing 177/664 atomic regions from SNP 52958 to 53558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,545 DEBUG Processing 523/710 atomic regions from SNP 156603 to 157203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,625 DEBUG Processing 20/640 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,650 DEBUG Processing 254/705 atomic regions from SNP 75914 to 76514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,735 DEBUG Processing 178/664 atomic regions from SNP 53258 to 53858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:24,791 DEBUG Processing 524/710 atomic regions from SNP 156903 to 157503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:24,845 DEBUG Processing 21/640 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:24,892 DEBUG Processing 255/705 atomic regions from SNP 76214 to 76814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:24,957 DEBUG Processing 179/664 atomic regions from SNP 53558 to 54158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,035 DEBUG Processing 525/710 atomic regions from SNP 157203 to 157803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,066 DEBUG Processing 22/640 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,133 DEBUG Processing 256/705 atomic regions from SNP 76514 to 77114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,205 DEBUG Processing 180/664 atomic regions from SNP 53858 to 54458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,293 DEBUG Processing 526/710 atomic regions from SNP 157503 to 158103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,299 DEBUG Processing 23/640 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,384 DEBUG Processing 257/705 atomic regions from SNP 76814 to 77414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,442 DEBUG Processing 181/664 atomic regions from SNP 54158 to 54758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,531 DEBUG Processing 24/640 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,559 DEBUG Processing 527/710 atomic regions from SNP 157803 to 158403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,631 DEBUG Processing 258/705 atomic regions from SNP 77114 to 77714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,675 DEBUG Processing 182/664 atomic regions from SNP 54458 to 55058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,767 DEBUG Processing 25/640 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:25,818 DEBUG Processing 528/710 atomic regions from SNP 158103 to 158703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:25,905 DEBUG Processing 259/705 atomic regions from SNP 77414 to 78014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:25,920 DEBUG Processing 183/664 atomic regions from SNP 54758 to 55358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:25,997 DEBUG Processing 26/640 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,073 DEBUG Processing 529/710 atomic regions from SNP 158403 to 159003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,143 DEBUG Processing 184/664 atomic regions from SNP 55058 to 55658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,155 DEBUG Processing 260/705 atomic regions from SNP 77714 to 78314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,230 DEBUG Processing 27/640 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,327 DEBUG Processing 530/710 atomic regions from SNP 158703 to 159303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,369 DEBUG Processing 185/664 atomic regions from SNP 55358 to 55958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,398 DEBUG Processing 261/705 atomic regions from SNP 78014 to 78614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,460 DEBUG Processing 28/640 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,584 DEBUG Processing 531/710 atomic regions from SNP 159003 to 159603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,596 DEBUG Processing 186/664 atomic regions from SNP 55658 to 56258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,645 DEBUG Processing 262/705 atomic regions from SNP 78314 to 78914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,690 DEBUG Processing 29/640 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:26,822 DEBUG Processing 187/664 atomic regions from SNP 55958 to 56558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:26,837 DEBUG Processing 532/710 atomic regions from SNP 159303 to 159903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:26,889 DEBUG Processing 263/705 atomic regions from SNP 78614 to 79214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:26,917 DEBUG Processing 30/640 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,048 DEBUG Processing 188/664 atomic regions from SNP 56258 to 56858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,089 DEBUG Processing 533/710 atomic regions from SNP 159603 to 160203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,134 DEBUG Processing 264/705 atomic regions from SNP 78914 to 79514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,138 DEBUG Processing 31/640 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,272 DEBUG Processing 189/664 atomic regions from SNP 56558 to 57158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,344 DEBUG Processing 534/710 atomic regions from SNP 159903 to 160503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,371 DEBUG Processing 32/640 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,376 DEBUG Processing 265/705 atomic regions from SNP 79214 to 79814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,490 DEBUG Processing 190/664 atomic regions from SNP 56858 to 57458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,598 DEBUG Processing 535/710 atomic regions from SNP 160203 to 160803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,605 DEBUG Processing 33/640 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,633 DEBUG Processing 266/705 atomic regions from SNP 79514 to 80114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,715 DEBUG Processing 191/664 atomic regions from SNP 57158 to 57758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:27,838 DEBUG Processing 34/640 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:27,883 DEBUG Processing 536/710 atomic regions from SNP 160503 to 161103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:27,915 DEBUG Processing 267/705 atomic regions from SNP 79814 to 80414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:27,933 DEBUG Processing 192/664 atomic regions from SNP 57458 to 58058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,065 DEBUG Processing 35/640 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,144 DEBUG Processing 537/710 atomic regions from SNP 160803 to 161403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,169 DEBUG Processing 268/705 atomic regions from SNP 80114 to 80714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,177 DEBUG Processing 193/664 atomic regions from SNP 57758 to 58358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,287 DEBUG Processing 36/640 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,386 DEBUG Processing 538/710 atomic regions from SNP 161103 to 161703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,410 DEBUG Processing 269/705 atomic regions from SNP 80414 to 81014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,440 DEBUG Processing 194/664 atomic regions from SNP 58058 to 58658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,503 DEBUG Processing 37/640 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,627 DEBUG Processing 539/710 atomic regions from SNP 161403 to 162003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,649 DEBUG Processing 270/705 atomic regions from SNP 80714 to 81314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,674 DEBUG Processing 195/664 atomic regions from SNP 58358 to 58958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,725 DEBUG Processing 38/640 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:28,892 DEBUG Processing 540/710 atomic regions from SNP 161703 to 162303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:28,900 DEBUG Processing 271/705 atomic regions from SNP 81014 to 81614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:28,910 DEBUG Processing 196/664 atomic regions from SNP 58658 to 59258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:28,949 DEBUG Processing 39/640 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,146 DEBUG Processing 197/664 atomic regions from SNP 58958 to 59558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,156 DEBUG Processing 272/705 atomic regions from SNP 81314 to 81914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,165 DEBUG Processing 541/710 atomic regions from SNP 162003 to 162603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,182 DEBUG Processing 40/640 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,398 DEBUG Processing 198/664 atomic regions from SNP 59258 to 59858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,414 DEBUG Processing 273/705 atomic regions from SNP 81614 to 82214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,420 DEBUG Processing 41/640 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,428 DEBUG Processing 542/710 atomic regions from SNP 162303 to 162903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,633 DEBUG Processing 199/664 atomic regions from SNP 59558 to 60158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,655 DEBUG Processing 42/640 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,668 DEBUG Processing 274/705 atomic regions from SNP 81914 to 82514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,695 DEBUG Processing 543/710 atomic regions from SNP 162603 to 163203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:29,859 DEBUG Processing 200/664 atomic regions from SNP 59858 to 60458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:29,883 DEBUG Processing 43/640 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:29,944 DEBUG Processing 275/705 atomic regions from SNP 82214 to 82814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:29,968 DEBUG Processing 544/710 atomic regions from SNP 162903 to 163503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,083 DEBUG Processing 201/664 atomic regions from SNP 60158 to 60758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,098 DEBUG Processing 44/640 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,230 DEBUG Processing 276/705 atomic regions from SNP 82514 to 83114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,232 DEBUG Processing 545/710 atomic regions from SNP 163203 to 163803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,307 DEBUG Processing 202/664 atomic regions from SNP 60458 to 61058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,326 DEBUG Processing 45/640 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,488 DEBUG Processing 546/710 atomic regions from SNP 163503 to 164103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,491 DEBUG Processing 277/705 atomic regions from SNP 82814 to 83414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,532 DEBUG Processing 203/664 atomic regions from SNP 60758 to 61358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,556 DEBUG Processing 46/640 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,744 DEBUG Processing 278/705 atomic regions from SNP 83114 to 83714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,746 DEBUG Processing 547/710 atomic regions from SNP 163803 to 164403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:30,754 DEBUG Processing 204/664 atomic regions from SNP 61058 to 61658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,785 DEBUG Processing 47/640 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:30,969 DEBUG Processing 205/664 atomic regions from SNP 61358 to 61958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:30,988 DEBUG Processing 279/705 atomic regions from SNP 83414 to 84014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:30,992 DEBUG Processing 548/710 atomic regions from SNP 164103 to 164703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,005 DEBUG Processing 48/640 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,192 DEBUG Processing 206/664 atomic regions from SNP 61658 to 62258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,228 DEBUG Processing 49/640 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,239 DEBUG Processing 549/710 atomic regions from SNP 164403 to 165003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,263 DEBUG Processing 280/705 atomic regions from SNP 83714 to 84314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,417 DEBUG Processing 207/664 atomic regions from SNP 61958 to 62558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,447 DEBUG Processing 50/640 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,485 DEBUG Processing 550/710 atomic regions from SNP 164703 to 165303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,502 DEBUG Processing 281/705 atomic regions from SNP 84014 to 84614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,644 DEBUG Processing 208/664 atomic regions from SNP 62258 to 62858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,671 DEBUG Processing 51/640 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,730 DEBUG Processing 551/710 atomic regions from SNP 165003 to 165603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,741 DEBUG Processing 282/705 atomic regions from SNP 84314 to 84914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:31,875 DEBUG Processing 209/664 atomic regions from SNP 62558 to 63158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:31,890 DEBUG Processing 52/640 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:31,976 DEBUG Processing 552/710 atomic regions from SNP 165303 to 165903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:31,982 DEBUG Processing 283/705 atomic regions from SNP 84614 to 85214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,114 DEBUG Processing 210/664 atomic regions from SNP 62858 to 63458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,117 DEBUG Processing 53/640 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,226 DEBUG Processing 284/705 atomic regions from SNP 84914 to 85514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,229 DEBUG Processing 553/710 atomic regions from SNP 165603 to 166203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,338 DEBUG Processing 54/640 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,338 DEBUG Processing 211/664 atomic regions from SNP 63158 to 63758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,464 DEBUG Processing 285/705 atomic regions from SNP 85214 to 85814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,473 DEBUG Processing 554/710 atomic regions from SNP 165903 to 166503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,566 DEBUG Processing 55/640 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,577 DEBUG Processing 212/664 atomic regions from SNP 63458 to 64058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,715 DEBUG Processing 286/705 atomic regions from SNP 85514 to 86114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,730 DEBUG Processing 555/710 atomic regions from SNP 166203 to 166803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:32,806 DEBUG Processing 56/640 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:32,833 DEBUG Processing 213/664 atomic regions from SNP 63758 to 64358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:32,973 DEBUG Processing 287/705 atomic regions from SNP 85814 to 86414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:32,976 DEBUG Processing 556/710 atomic regions from SNP 166503 to 167103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,028 DEBUG Processing 57/640 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,065 DEBUG Processing 214/664 atomic regions from SNP 64058 to 64658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,236 DEBUG Processing 288/705 atomic regions from SNP 86114 to 86714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,257 DEBUG Processing 557/710 atomic regions from SNP 166803 to 167403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,272 DEBUG Processing 58/640 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,339 DEBUG Processing 215/664 atomic regions from SNP 64358 to 64958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,487 DEBUG Processing 289/705 atomic regions from SNP 86414 to 87014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,507 DEBUG Processing 59/640 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,525 DEBUG Processing 558/710 atomic regions from SNP 167103 to 167703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,573 DEBUG Processing 216/664 atomic regions from SNP 64658 to 65258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,724 DEBUG Processing 290/705 atomic regions from SNP 86714 to 87314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:33,726 DEBUG Processing 60/640 atomic regions from SNP 17759 to 18359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,783 DEBUG Processing 559/710 atomic regions from SNP 167403 to 168003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:33,798 DEBUG Processing 217/664 atomic regions from SNP 64958 to 65558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:33,936 DEBUG Processing 61/640 atomic regions from SNP 18059 to 18659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:33,958 DEBUG Processing 291/705 atomic regions from SNP 87014 to 87614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,021 DEBUG Processing 218/664 atomic regions from SNP 65258 to 65858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,027 DEBUG Processing 560/710 atomic regions from SNP 167703 to 168303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,154 DEBUG Processing 62/640 atomic regions from SNP 18359 to 18959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,197 DEBUG Processing 292/705 atomic regions from SNP 87314 to 87914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,242 DEBUG Processing 219/664 atomic regions from SNP 65558 to 66158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,278 DEBUG Processing 561/710 atomic regions from SNP 168003 to 168603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,375 DEBUG Processing 63/640 atomic regions from SNP 18659 to 19259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,437 DEBUG Processing 293/705 atomic regions from SNP 87614 to 88214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,461 DEBUG Processing 220/664 atomic regions from SNP 65858 to 66458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,527 DEBUG Processing 562/710 atomic regions from SNP 168303 to 168903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,592 DEBUG Processing 64/640 atomic regions from SNP 18959 to 19559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,672 DEBUG Processing 294/705 atomic regions from SNP 87914 to 88514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,687 DEBUG Processing 221/664 atomic regions from SNP 66158 to 66758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,791 DEBUG Processing 563/710 atomic regions from SNP 168603 to 169203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:34,828 DEBUG Processing 65/640 atomic regions from SNP 19259 to 19859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:34,920 DEBUG Processing 222/664 atomic regions from SNP 66458 to 67058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:34,928 DEBUG Processing 295/705 atomic regions from SNP 88214 to 88814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:34,989 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:52:35,056 DEBUG Processing 564/710 atomic regions from SNP 168903 to 169503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,061 DEBUG Processing 66/640 atomic regions from SNP 19559 to 20159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,152 DEBUG Processing 223/664 atomic regions from SNP 66758 to 67358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,179 DEBUG Processing 296/705 atomic regions from SNP 88514 to 89114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,290 DEBUG Processing 67/640 atomic regions from SNP 19859 to 20459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,315 DEBUG Processing 565/710 atomic regions from SNP 169203 to 169803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,384 DEBUG Processing 224/664 atomic regions from SNP 67058 to 67658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,410 DEBUG Processing 297/705 atomic regions from SNP 88814 to 89414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,521 DEBUG Processing 68/640 atomic regions from SNP 20159 to 20759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,576 DEBUG Processing 566/710 atomic regions from SNP 169503 to 170103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,612 DEBUG Processing 225/664 atomic regions from SNP 67358 to 67958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,649 DEBUG Processing 298/705 atomic regions from SNP 89114 to 89714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,748 DEBUG Processing 69/640 atomic regions from SNP 20459 to 21059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:35,855 DEBUG Processing 567/710 atomic regions from SNP 169803 to 170403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:35,861 DEBUG Processing 226/664 atomic regions from SNP 67658 to 68258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:35,916 DEBUG Processing 299/705 atomic regions from SNP 89414 to 90014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:35,934 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:52:35,936 DEBUG chr15: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.015 2025-01-31 09:52:35,969 DEBUG Processing 70/640 atomic regions from SNP 20759 to 21359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,099 DEBUG Processing 227/664 atomic regions from SNP 67958 to 68558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,117 DEBUG Processing 568/710 atomic regions from SNP 170103 to 170703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,157 DEBUG Processing 300/705 atomic regions from SNP 89714 to 90314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,190 DEBUG Processing 71/640 atomic regions from SNP 21059 to 21659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,358 DEBUG Processing 228/664 atomic regions from SNP 68258 to 68858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,363 DEBUG Processing 569/710 atomic regions from SNP 170403 to 171003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,404 DEBUG Processing 301/705 atomic regions from SNP 90014 to 90614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,416 DEBUG Processing 72/640 atomic regions from SNP 21359 to 21959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,601 DEBUG Processing 229/664 atomic regions from SNP 68558 to 69158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,614 DEBUG Processing 570/710 atomic regions from SNP 170703 to 171303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,649 DEBUG Processing 73/640 atomic regions from SNP 21659 to 22259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,658 DEBUG Processing 302/705 atomic regions from SNP 90314 to 90914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:36,823 DEBUG Processing 230/664 atomic regions from SNP 68858 to 69458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:36,867 DEBUG Processing 571/710 atomic regions from SNP 171003 to 171603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:36,879 DEBUG Processing 74/640 atomic regions from SNP 21959 to 22559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:36,905 DEBUG Processing 303/705 atomic regions from SNP 90614 to 91214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,046 DEBUG Processing 231/664 atomic regions from SNP 69158 to 69758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,105 DEBUG Processing 75/640 atomic regions from SNP 22259 to 22859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,120 DEBUG Processing 572/710 atomic regions from SNP 171303 to 171903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,156 DEBUG Processing 304/705 atomic regions from SNP 90914 to 91514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,270 DEBUG Processing 232/664 atomic regions from SNP 69458 to 70058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,329 DEBUG Processing 76/640 atomic regions from SNP 22559 to 23159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,373 DEBUG Processing 573/710 atomic regions from SNP 171603 to 172203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,408 DEBUG Processing 305/705 atomic regions from SNP 91214 to 91814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,501 DEBUG Processing 233/664 atomic regions from SNP 69758 to 70358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,554 DEBUG Processing 77/640 atomic regions from SNP 22859 to 23459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,648 DEBUG Processing 574/710 atomic regions from SNP 171903 to 172503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,661 DEBUG Processing 306/705 atomic regions from SNP 91514 to 92114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,729 DEBUG Processing 234/664 atomic regions from SNP 70058 to 70658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:37,777 DEBUG Processing 78/640 atomic regions from SNP 23159 to 23759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:37,909 DEBUG Processing 575/710 atomic regions from SNP 172203 to 172803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:37,910 DEBUG chr15 total SNP count: 175005 2025-01-31 09:52:37,911 DEBUG chr15 length: 104043685 2025-01-31 09:52:37,911 DEBUG ----------------------------------------- 2025-01-31 09:52:37,911 INFO Processing SNPs in chr15 2025-01-31 09:52:37,919 DEBUG Processing 307/705 atomic regions from SNP 91814 to 92414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:37,978 DEBUG Processing 235/664 atomic regions from SNP 70358 to 70958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,010 DEBUG Processing 79/640 atomic regions from SNP 23459 to 24059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,093 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 175005)] 2025-01-31 09:52:38,162 DEBUG Processing 576/710 atomic regions from SNP 172503 to 173103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,166 DEBUG Processing 308/705 atomic regions from SNP 92114 to 92714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,218 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:38,235 DEBUG Processing 236/664 atomic regions from SNP 70658 to 71258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,235 DEBUG Processing 80/640 atomic regions from SNP 23759 to 24359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,426 DEBUG Processing 309/705 atomic regions from SNP 92414 to 93014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,430 DEBUG Processing 577/710 atomic regions from SNP 172803 to 173403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,473 DEBUG Processing 237/664 atomic regions from SNP 70958 to 71558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,474 DEBUG Processing 81/640 atomic regions from SNP 24059 to 24659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,682 DEBUG Processing 310/705 atomic regions from SNP 92714 to 93314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,691 DEBUG Processing 578/710 atomic regions from SNP 173103 to 173703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,708 DEBUG Processing 238/664 atomic regions from SNP 71258 to 71858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,709 DEBUG Processing 82/640 atomic regions from SNP 24359 to 24959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:38,932 DEBUG Processing 311/705 atomic regions from SNP 93014 to 93614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:38,939 DEBUG Processing 239/664 atomic regions from SNP 71558 to 72158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:38,949 DEBUG Processing 579/710 atomic regions from SNP 173403 to 174003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:38,966 DEBUG Processing 83/640 atomic regions from SNP 24659 to 25259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,173 DEBUG Processing 240/664 atomic regions from SNP 71858 to 72458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,208 DEBUG Processing 580/710 atomic regions from SNP 173703 to 174303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,212 DEBUG Processing 312/705 atomic regions from SNP 93314 to 93914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,215 DEBUG Processing 84/640 atomic regions from SNP 24959 to 25559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,406 DEBUG Processing 241/664 atomic regions from SNP 72158 to 72758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,451 DEBUG Processing 85/640 atomic regions from SNP 25259 to 25859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,468 DEBUG Processing 313/705 atomic regions from SNP 93614 to 94214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,471 DEBUG Processing 581/710 atomic regions from SNP 174003 to 174603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,637 DEBUG Processing 242/664 atomic regions from SNP 72458 to 73058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,680 DEBUG Processing 86/640 atomic regions from SNP 25559 to 26159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,728 DEBUG Processing 314/705 atomic regions from SNP 93914 to 94514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,733 DEBUG Processing 582/710 atomic regions from SNP 174303 to 174903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:39,896 DEBUG Processing 243/664 atomic regions from SNP 72758 to 73358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:39,906 DEBUG Processing 87/640 atomic regions from SNP 25859 to 26459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:39,987 DEBUG Processing 315/705 atomic regions from SNP 94214 to 94814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:39,992 DEBUG Processing 583/710 atomic regions from SNP 174603 to 175203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,124 DEBUG Processing 88/640 atomic regions from SNP 26159 to 26759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,148 DEBUG Processing 244/664 atomic regions from SNP 73058 to 73658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,263 DEBUG Processing 316/705 atomic regions from SNP 94514 to 95114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,270 DEBUG Processing 584/710 atomic regions from SNP 174903 to 175503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,346 DEBUG Processing 89/640 atomic regions from SNP 26459 to 27059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,379 DEBUG Processing 245/664 atomic regions from SNP 73358 to 73958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,519 DEBUG Processing 317/705 atomic regions from SNP 94814 to 95414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,540 DEBUG Processing 585/710 atomic regions from SNP 175203 to 175803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,577 DEBUG Processing 90/640 atomic regions from SNP 26759 to 27359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,610 DEBUG Processing 246/664 atomic regions from SNP 73658 to 74258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:40,773 DEBUG Processing 318/705 atomic regions from SNP 95114 to 95714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:40,800 DEBUG Processing 586/710 atomic regions from SNP 175503 to 176103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:40,813 DEBUG Processing 91/640 atomic regions from SNP 27059 to 27659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:40,845 DEBUG Processing 247/664 atomic regions from SNP 73958 to 74558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,036 DEBUG Processing 319/705 atomic regions from SNP 95414 to 96014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,045 DEBUG Processing 92/640 atomic regions from SNP 27359 to 27959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,060 DEBUG Processing 587/710 atomic regions from SNP 175803 to 176403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,078 DEBUG Processing 248/664 atomic regions from SNP 74258 to 74858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,275 DEBUG Processing 93/640 atomic regions from SNP 27659 to 28259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,310 DEBUG Processing 249/664 atomic regions from SNP 74558 to 75158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,315 DEBUG Processing 320/705 atomic regions from SNP 95714 to 96314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,318 DEBUG Processing 588/710 atomic regions from SNP 176103 to 176703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,500 DEBUG Processing 94/640 atomic regions from SNP 27959 to 28559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,553 DEBUG Processing 250/664 atomic regions from SNP 74858 to 75458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,573 DEBUG Processing 589/710 atomic regions from SNP 176403 to 177003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,585 DEBUG Processing 321/705 atomic regions from SNP 96014 to 96614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,732 DEBUG Processing 95/640 atomic regions from SNP 28259 to 28859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:41,803 DEBUG Processing 251/664 atomic regions from SNP 75158 to 75758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:41,828 DEBUG Processing 590/710 atomic regions from SNP 176703 to 177303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:41,854 DEBUG Processing 322/705 atomic regions from SNP 96314 to 96914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:41,962 DEBUG Processing 96/640 atomic regions from SNP 28559 to 29159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,028 DEBUG Processing 252/664 atomic regions from SNP 75458 to 76058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,075 DEBUG Processing 591/710 atomic regions from SNP 177003 to 177603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,104 DEBUG Processing 323/705 atomic regions from SNP 96614 to 97214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,189 DEBUG Processing 97/640 atomic regions from SNP 28859 to 29459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,246 DEBUG Processing 253/664 atomic regions from SNP 75758 to 76358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,322 DEBUG Processing 592/710 atomic regions from SNP 177303 to 177903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,353 DEBUG Processing 324/705 atomic regions from SNP 96914 to 97514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,422 DEBUG Processing 98/640 atomic regions from SNP 29159 to 29759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,471 DEBUG Processing 254/664 atomic regions from SNP 76058 to 76658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,571 DEBUG Processing 593/710 atomic regions from SNP 177603 to 178203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,609 DEBUG Processing 325/705 atomic regions from SNP 97214 to 97814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,687 DEBUG Processing 99/640 atomic regions from SNP 29459 to 30059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:42,695 DEBUG Processing 255/664 atomic regions from SNP 76358 to 76958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,825 DEBUG Processing 594/710 atomic regions from SNP 177903 to 178503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:42,872 DEBUG Processing 326/705 atomic regions from SNP 97514 to 98114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:42,921 DEBUG Processing 256/664 atomic regions from SNP 76658 to 77258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:42,942 DEBUG Processing 100/640 atomic regions from SNP 29759 to 30359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,084 DEBUG Processing 595/710 atomic regions from SNP 178203 to 178803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,143 DEBUG Processing 327/705 atomic regions from SNP 97814 to 98414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,151 DEBUG Processing 257/664 atomic regions from SNP 76958 to 77558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,192 DEBUG Processing 101/640 atomic regions from SNP 30059 to 30659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,344 DEBUG Processing 596/710 atomic regions from SNP 178503 to 179103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,382 DEBUG Processing 258/664 atomic regions from SNP 77258 to 77858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,426 DEBUG Processing 328/705 atomic regions from SNP 98114 to 98714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,434 DEBUG Processing 102/640 atomic regions from SNP 30359 to 30959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,598 DEBUG Processing 597/710 atomic regions from SNP 178803 to 179403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,617 DEBUG Processing 259/664 atomic regions from SNP 77558 to 78158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,668 DEBUG Processing 103/640 atomic regions from SNP 30659 to 31259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,682 DEBUG Processing 329/705 atomic regions from SNP 98414 to 99014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:43,860 DEBUG Processing 598/710 atomic regions from SNP 179103 to 179703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:43,861 DEBUG Processing 260/664 atomic regions from SNP 77858 to 78458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:43,901 DEBUG Processing 104/640 atomic regions from SNP 30959 to 31559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:43,952 DEBUG Processing 330/705 atomic regions from SNP 98714 to 99314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,103 DEBUG Processing 261/664 atomic regions from SNP 78158 to 78758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,114 DEBUG Processing 599/710 atomic regions from SNP 179403 to 180003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,124 DEBUG Processing 105/640 atomic regions from SNP 31259 to 31859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,218 DEBUG Processing 331/705 atomic regions from SNP 99014 to 99614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,350 DEBUG Processing 106/640 atomic regions from SNP 31559 to 32159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,362 DEBUG Processing 262/664 atomic regions from SNP 78458 to 79058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,363 DEBUG Processing 600/710 atomic regions from SNP 179703 to 180303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,485 DEBUG Processing 332/705 atomic regions from SNP 99314 to 99914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,570 DEBUG Processing 107/640 atomic regions from SNP 31859 to 32459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,611 DEBUG Processing 263/664 atomic regions from SNP 78758 to 79358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,613 DEBUG Processing 601/710 atomic regions from SNP 180003 to 180603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,726 DEBUG Processing 333/705 atomic regions from SNP 99614 to 100214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:44,791 DEBUG Processing 108/640 atomic regions from SNP 32159 to 32759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:44,866 DEBUG Processing 264/664 atomic regions from SNP 79058 to 79658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:44,877 DEBUG Processing 602/710 atomic regions from SNP 180303 to 180903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:44,970 DEBUG Processing 334/705 atomic regions from SNP 99914 to 100514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,016 DEBUG Processing 109/640 atomic regions from SNP 32459 to 33059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,120 DEBUG Processing 265/664 atomic regions from SNP 79358 to 79958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,153 DEBUG Processing 603/710 atomic regions from SNP 180603 to 181203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,218 DEBUG Processing 335/705 atomic regions from SNP 100214 to 100814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,247 DEBUG Processing 110/640 atomic regions from SNP 32759 to 33359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,357 DEBUG Processing 266/664 atomic regions from SNP 79658 to 80258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,420 DEBUG Processing 604/710 atomic regions from SNP 180903 to 181503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,467 DEBUG Processing 336/705 atomic regions from SNP 100514 to 101114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,476 DEBUG Processing 111/640 atomic regions from SNP 33059 to 33659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,595 DEBUG Processing 267/664 atomic regions from SNP 79958 to 80558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,672 DEBUG Processing 605/710 atomic regions from SNP 181203 to 181803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,711 DEBUG Processing 112/640 atomic regions from SNP 33359 to 33959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,713 DEBUG Processing 337/705 atomic regions from SNP 100814 to 101414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:45,823 DEBUG Processing 268/664 atomic regions from SNP 80258 to 80858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:45,937 DEBUG Processing 113/640 atomic regions from SNP 33659 to 34259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:45,940 DEBUG Processing 606/710 atomic regions from SNP 181503 to 182103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:45,956 DEBUG Processing 338/705 atomic regions from SNP 101114 to 101714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,052 DEBUG Processing 269/664 atomic regions from SNP 80558 to 81158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,146 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:52:46,147 DEBUG chr16: Signal quantile: 0.992. signal threshold: 12. Best RMSEA: 0.019 2025-01-31 09:52:46,158 DEBUG Processing 114/640 atomic regions from SNP 33959 to 34559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,191 DEBUG Processing 607/710 atomic regions from SNP 181803 to 182403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,202 DEBUG Processing 339/705 atomic regions from SNP 101414 to 102014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,279 DEBUG Processing 270/664 atomic regions from SNP 80858 to 81458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,384 DEBUG Processing 115/640 atomic regions from SNP 34259 to 34859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,446 DEBUG Processing 608/710 atomic regions from SNP 182103 to 182703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,451 DEBUG Processing 340/705 atomic regions from SNP 101714 to 102314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,511 DEBUG Processing 271/664 atomic regions from SNP 81158 to 81758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,613 DEBUG Processing 116/640 atomic regions from SNP 34559 to 35159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,708 DEBUG Processing 341/705 atomic regions from SNP 102014 to 102614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:46,729 DEBUG Processing 609/710 atomic regions from SNP 182403 to 183003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:46,741 DEBUG Processing 272/664 atomic regions from SNP 81458 to 82058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,841 DEBUG Processing 117/640 atomic regions from SNP 34859 to 35459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:46,970 DEBUG Processing 273/664 atomic regions from SNP 81758 to 82358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:46,982 DEBUG Processing 342/705 atomic regions from SNP 102314 to 102914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,021 DEBUG Processing 610/710 atomic regions from SNP 182703 to 183303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,063 DEBUG Processing 118/640 atomic regions from SNP 35159 to 35759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,203 DEBUG Processing 274/664 atomic regions from SNP 82058 to 82658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,243 DEBUG Processing 343/705 atomic regions from SNP 102614 to 103214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,296 DEBUG Processing 119/640 atomic regions from SNP 35459 to 36059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,313 DEBUG Processing 611/710 atomic regions from SNP 183003 to 183603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,436 DEBUG Processing 275/664 atomic regions from SNP 82358 to 82958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,491 DEBUG Processing 344/705 atomic regions from SNP 102914 to 103514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,524 DEBUG Processing 120/640 atomic regions from SNP 35759 to 36359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,585 DEBUG Processing 612/710 atomic regions from SNP 183303 to 183903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,691 DEBUG Processing 276/664 atomic regions from SNP 82658 to 83258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,742 DEBUG Processing 345/705 atomic regions from SNP 103214 to 103814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:47,751 DEBUG Processing 121/640 atomic regions from SNP 36059 to 36659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,881 DEBUG Processing 613/710 atomic regions from SNP 183603 to 184203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:47,951 DEBUG Processing 277/664 atomic regions from SNP 82958 to 83558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:47,986 DEBUG Processing 122/640 atomic regions from SNP 36359 to 36959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:47,998 DEBUG Processing 346/705 atomic regions from SNP 103514 to 104114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,028 DEBUG chr16 total SNP count: 163508 2025-01-31 09:52:48,028 DEBUG chr16 length: 98207768 2025-01-31 09:52:48,028 DEBUG ----------------------------------------- 2025-01-31 09:52:48,028 INFO Processing SNPs in chr16 2025-01-31 09:52:48,162 DEBUG Processing 614/710 atomic regions from SNP 183903 to 184503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,196 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 163508)] 2025-01-31 09:52:48,199 DEBUG Processing 278/664 atomic regions from SNP 83258 to 83858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,216 DEBUG Processing 123/640 atomic regions from SNP 36659 to 37259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,248 DEBUG Processing 347/705 atomic regions from SNP 103814 to 104414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,311 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:48,417 DEBUG Processing 279/664 atomic regions from SNP 83558 to 84158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,440 DEBUG Processing 615/710 atomic regions from SNP 184203 to 184803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,457 DEBUG Processing 124/640 atomic regions from SNP 36959 to 37559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,498 DEBUG Processing 348/705 atomic regions from SNP 104114 to 104714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,636 DEBUG Processing 280/664 atomic regions from SNP 83858 to 84458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,684 DEBUG Processing 125/640 atomic regions from SNP 37259 to 37859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:48,723 DEBUG Processing 616/710 atomic regions from SNP 184503 to 185103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,749 DEBUG Processing 349/705 atomic regions from SNP 104414 to 105014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:48,863 DEBUG Processing 281/664 atomic regions from SNP 84158 to 84758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:48,916 DEBUG Processing 126/640 atomic regions from SNP 37559 to 38159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,011 DEBUG Processing 350/705 atomic regions from SNP 104714 to 105314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,015 DEBUG Processing 617/710 atomic regions from SNP 184803 to 185403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,091 DEBUG Processing 282/664 atomic regions from SNP 84458 to 85058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,140 DEBUG Processing 127/640 atomic regions from SNP 37859 to 38459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,270 DEBUG Processing 351/705 atomic regions from SNP 105014 to 105614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,292 DEBUG Processing 618/710 atomic regions from SNP 185103 to 185703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,323 DEBUG Processing 283/664 atomic regions from SNP 84758 to 85358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,372 DEBUG Processing 128/640 atomic regions from SNP 38159 to 38759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,522 DEBUG Processing 352/705 atomic regions from SNP 105314 to 105914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,552 DEBUG Processing 284/664 atomic regions from SNP 85058 to 85658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,578 DEBUG Processing 619/710 atomic regions from SNP 185403 to 186003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,604 DEBUG Processing 129/640 atomic regions from SNP 38459 to 39059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,784 DEBUG Processing 353/705 atomic regions from SNP 105614 to 106214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:49,790 DEBUG Processing 285/664 atomic regions from SNP 85358 to 85958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:49,835 DEBUG Processing 130/640 atomic regions from SNP 38759 to 39359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:49,847 DEBUG Processing 620/710 atomic regions from SNP 185703 to 186303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,020 DEBUG Processing 286/664 atomic regions from SNP 85658 to 86258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,036 DEBUG Processing 354/705 atomic regions from SNP 105914 to 106514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,065 DEBUG Processing 131/640 atomic regions from SNP 39059 to 39659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:50,101 DEBUG Processing 621/710 atomic regions from SNP 186003 to 186603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,244 DEBUG Processing 287/664 atomic regions from SNP 85958 to 86558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,271 DEBUG Processing 355/705 atomic regions from SNP 106214 to 106814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,280 DEBUG Processing 132/640 atomic regions from SNP 39359 to 39959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:50,350 DEBUG Processing 622/710 atomic regions from SNP 186303 to 186903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,473 DEBUG Processing 288/664 atomic regions from SNP 86258 to 86858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,504 DEBUG Processing 133/640 atomic regions from SNP 39659 to 40259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:50,516 DEBUG Processing 356/705 atomic regions from SNP 106514 to 107114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,602 DEBUG Processing 623/710 atomic regions from SNP 186603 to 187203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,704 DEBUG Processing 289/664 atomic regions from SNP 86558 to 87158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,729 DEBUG Processing 134/640 atomic regions from SNP 39959 to 40559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:50,762 DEBUG Processing 357/705 atomic regions from SNP 106814 to 107414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:50,853 DEBUG Processing 624/710 atomic regions from SNP 186903 to 187503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,931 DEBUG Processing 290/664 atomic regions from SNP 86858 to 87458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:50,955 DEBUG Processing 135/640 atomic regions from SNP 40259 to 40859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:51,012 DEBUG Processing 358/705 atomic regions from SNP 107114 to 107714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,119 DEBUG Processing 625/710 atomic regions from SNP 187203 to 187803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,176 DEBUG Processing 291/664 atomic regions from SNP 87158 to 87758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,184 DEBUG Processing 136/640 atomic regions from SNP 40559 to 41159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:51,266 DEBUG Processing 359/705 atomic regions from SNP 107414 to 108014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,376 DEBUG Processing 626/710 atomic regions from SNP 187503 to 188103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,402 DEBUG Processing 292/664 atomic regions from SNP 87458 to 88058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,402 DEBUG Processing 137/640 atomic regions from SNP 40859 to 41459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:51,510 DEBUG Processing 360/705 atomic regions from SNP 107714 to 108314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,619 DEBUG Processing 138/640 atomic regions from SNP 41159 to 41759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:51,629 DEBUG Processing 293/664 atomic regions from SNP 87758 to 88358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,636 DEBUG Processing 627/710 atomic regions from SNP 187803 to 188403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,752 DEBUG Processing 361/705 atomic regions from SNP 108014 to 108614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:51,840 DEBUG Processing 139/640 atomic regions from SNP 41459 to 42059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:51,878 DEBUG Processing 294/664 atomic regions from SNP 88058 to 88658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:51,901 DEBUG Processing 628/710 atomic regions from SNP 188103 to 188703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,990 DEBUG Processing 362/705 atomic regions from SNP 108314 to 108914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,070 DEBUG Processing 140/640 atomic regions from SNP 41759 to 42359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:52,138 DEBUG Processing 295/664 atomic regions from SNP 88358 to 88958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,178 DEBUG Processing 629/710 atomic regions from SNP 188403 to 189003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,234 DEBUG Processing 363/705 atomic regions from SNP 108614 to 109214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,301 DEBUG Processing 141/640 atomic regions from SNP 42059 to 42659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:52,381 DEBUG Processing 296/664 atomic regions from SNP 88658 to 89258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,436 DEBUG Processing 630/710 atomic regions from SNP 188703 to 189303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,478 DEBUG Processing 364/705 atomic regions from SNP 108914 to 109514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,531 DEBUG Processing 142/640 atomic regions from SNP 42359 to 42959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:52,616 DEBUG Processing 297/664 atomic regions from SNP 88958 to 89558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,690 DEBUG Processing 631/710 atomic regions from SNP 189003 to 189603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,726 DEBUG Processing 365/705 atomic regions from SNP 109214 to 109814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:52,779 DEBUG Processing 143/640 atomic regions from SNP 42659 to 43259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:52,878 DEBUG Processing 298/664 atomic regions from SNP 89258 to 89858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:52,955 DEBUG Processing 632/710 atomic regions from SNP 189303 to 189903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,985 DEBUG Processing 366/705 atomic regions from SNP 109514 to 110114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,044 DEBUG Processing 144/640 atomic regions from SNP 42959 to 43559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:53,131 DEBUG Processing 299/664 atomic regions from SNP 89558 to 90158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,216 DEBUG Processing 633/710 atomic regions from SNP 189603 to 190203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,236 DEBUG Processing 367/705 atomic regions from SNP 109814 to 110414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,276 DEBUG Processing 145/640 atomic regions from SNP 43259 to 43859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:53,391 DEBUG Processing 300/664 atomic regions from SNP 89858 to 90458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,473 DEBUG Processing 634/710 atomic regions from SNP 189903 to 190503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,482 DEBUG Processing 368/705 atomic regions from SNP 110114 to 110714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,499 DEBUG Processing 146/640 atomic regions from SNP 43559 to 44159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:53,658 DEBUG Processing 301/664 atomic regions from SNP 90158 to 90758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,725 DEBUG Processing 147/640 atomic regions from SNP 43859 to 44459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:53,738 DEBUG Processing 635/710 atomic regions from SNP 190203 to 190803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,739 DEBUG Processing 369/705 atomic regions from SNP 110414 to 111014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,908 DEBUG Processing 302/664 atomic regions from SNP 90458 to 91058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:53,956 DEBUG Processing 148/640 atomic regions from SNP 44159 to 44759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:53,992 DEBUG Processing 370/705 atomic regions from SNP 110714 to 111314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:53,996 DEBUG Processing 636/710 atomic regions from SNP 190503 to 191103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,143 DEBUG Processing 303/664 atomic regions from SNP 90758 to 91358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,192 DEBUG Processing 149/640 atomic regions from SNP 44459 to 45059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:54,247 DEBUG Processing 371/705 atomic regions from SNP 111014 to 111614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,249 DEBUG Processing 637/710 atomic regions from SNP 190803 to 191403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,373 DEBUG Processing 304/664 atomic regions from SNP 91058 to 91658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,425 DEBUG Processing 150/640 atomic regions from SNP 44759 to 45359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:54,502 DEBUG Processing 372/705 atomic regions from SNP 111314 to 111914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,502 DEBUG Processing 638/710 atomic regions from SNP 191103 to 191703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,600 DEBUG Processing 305/664 atomic regions from SNP 91358 to 91958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,662 DEBUG Processing 151/640 atomic regions from SNP 45059 to 45659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:54,750 DEBUG Processing 373/705 atomic regions from SNP 111614 to 112214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:54,756 DEBUG Processing 639/710 atomic regions from SNP 191403 to 192003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,831 DEBUG Processing 306/664 atomic regions from SNP 91658 to 92258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:54,900 DEBUG Processing 152/640 atomic regions from SNP 45359 to 45959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:55,004 DEBUG Processing 374/705 atomic regions from SNP 111914 to 112514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,013 DEBUG Processing 640/710 atomic regions from SNP 191703 to 192303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,060 DEBUG Processing 307/664 atomic regions from SNP 91958 to 92558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,114 DEBUG Processing 153/640 atomic regions from SNP 45659 to 46259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:55,259 DEBUG Processing 375/705 atomic regions from SNP 112214 to 112814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,270 DEBUG Processing 641/710 atomic regions from SNP 192003 to 192603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,291 DEBUG Processing 308/664 atomic regions from SNP 92258 to 92858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,329 DEBUG Processing 154/640 atomic regions from SNP 45959 to 46559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:55,508 DEBUG Processing 376/705 atomic regions from SNP 112514 to 113114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,516 DEBUG Processing 309/664 atomic regions from SNP 92558 to 93158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,524 DEBUG Processing 642/710 atomic regions from SNP 192303 to 192903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,552 DEBUG Processing 155/640 atomic regions from SNP 46259 to 46859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:55,745 DEBUG Processing 310/664 atomic regions from SNP 92858 to 93458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:55,761 DEBUG Processing 377/705 atomic regions from SNP 112814 to 113414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:55,779 DEBUG Processing 156/640 atomic regions from SNP 46559 to 47159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:55,780 DEBUG Processing 643/710 atomic regions from SNP 192603 to 193203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,975 DEBUG Processing 311/664 atomic regions from SNP 93158 to 93758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,005 DEBUG Processing 157/640 atomic regions from SNP 46859 to 47459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:56,007 DEBUG Processing 378/705 atomic regions from SNP 113114 to 113714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,032 DEBUG Processing 644/710 atomic regions from SNP 192903 to 193503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,208 DEBUG Processing 312/664 atomic regions from SNP 93458 to 94058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,227 DEBUG Processing 158/640 atomic regions from SNP 47159 to 47759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:56,250 DEBUG Processing 379/705 atomic regions from SNP 113414 to 114014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,279 DEBUG Processing 645/710 atomic regions from SNP 193203 to 193803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,439 DEBUG Processing 313/664 atomic regions from SNP 93758 to 94358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,443 DEBUG Processing 159/640 atomic regions from SNP 47459 to 48059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:56,484 DEBUG Processing 380/705 atomic regions from SNP 113714 to 114314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,520 DEBUG Processing 646/710 atomic regions from SNP 193503 to 194103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,668 DEBUG Processing 160/640 atomic regions from SNP 47759 to 48359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:56,675 DEBUG Processing 314/664 atomic regions from SNP 94058 to 94658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:56,746 DEBUG Processing 381/705 atomic regions from SNP 114014 to 114614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:56,768 DEBUG Processing 647/710 atomic regions from SNP 193803 to 194403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,894 DEBUG Processing 161/640 atomic regions from SNP 48059 to 48659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:56,911 DEBUG Processing 315/664 atomic regions from SNP 94358 to 94958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,017 DEBUG Processing 648/710 atomic regions from SNP 194103 to 194703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,020 DEBUG Processing 382/705 atomic regions from SNP 114314 to 114914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,120 DEBUG Processing 162/640 atomic regions from SNP 48359 to 48959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:57,148 DEBUG Processing 316/664 atomic regions from SNP 94658 to 95258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,280 DEBUG Processing 383/705 atomic regions from SNP 114614 to 115214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,284 DEBUG Processing 649/710 atomic regions from SNP 194403 to 195003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,343 DEBUG Processing 163/640 atomic regions from SNP 48659 to 49259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:57,413 DEBUG Processing 317/664 atomic regions from SNP 94958 to 95558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,526 DEBUG Processing 650/710 atomic regions from SNP 194703 to 195303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,541 DEBUG Processing 384/705 atomic regions from SNP 114914 to 115514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,570 DEBUG Processing 164/640 atomic regions from SNP 48959 to 49559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:57,667 DEBUG Processing 318/664 atomic regions from SNP 95258 to 95858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:57,797 DEBUG Processing 165/640 atomic regions from SNP 49259 to 49859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:57,810 DEBUG Processing 651/710 atomic regions from SNP 195003 to 195603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,817 DEBUG Processing 385/705 atomic regions from SNP 115214 to 115814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:57,918 DEBUG Processing 319/664 atomic regions from SNP 95558 to 96158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,017 DEBUG Processing 166/640 atomic regions from SNP 49559 to 50159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,069 DEBUG Processing 652/710 atomic regions from SNP 195303 to 195903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,104 DEBUG Processing 386/705 atomic regions from SNP 115514 to 116114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,165 DEBUG Processing 320/664 atomic regions from SNP 95858 to 96458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,242 DEBUG Processing 167/640 atomic regions from SNP 49859 to 50459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,328 DEBUG Processing 653/710 atomic regions from SNP 195603 to 196203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,391 DEBUG Processing 387/705 atomic regions from SNP 115814 to 116414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,395 DEBUG Processing 321/664 atomic regions from SNP 96158 to 96758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,459 DEBUG Processing 168/640 atomic regions from SNP 50159 to 50759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,573 DEBUG Processing 654/710 atomic regions from SNP 195903 to 196503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,623 DEBUG Processing 322/664 atomic regions from SNP 96458 to 97058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,671 DEBUG Processing 388/705 atomic regions from SNP 116114 to 116714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:58,680 DEBUG Processing 169/640 atomic regions from SNP 50459 to 51059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,814 DEBUG Processing 655/710 atomic regions from SNP 196203 to 196803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,850 DEBUG Processing 323/664 atomic regions from SNP 96758 to 97358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:58,906 DEBUG Processing 170/640 atomic regions from SNP 50759 to 51359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:58,951 DEBUG Processing 389/705 atomic regions from SNP 116414 to 117014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,088 DEBUG Processing 656/710 atomic regions from SNP 196503 to 197103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,108 DEBUG Processing 324/664 atomic regions from SNP 97058 to 97658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,177 DEBUG Processing 171/640 atomic regions from SNP 51059 to 51659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,255 DEBUG Processing 390/705 atomic regions from SNP 116714 to 117314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,368 DEBUG Processing 657/710 atomic regions from SNP 196803 to 197403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,375 DEBUG Processing 325/664 atomic regions from SNP 97358 to 97958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,436 DEBUG Processing 172/640 atomic regions from SNP 51359 to 51959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,537 DEBUG Processing 391/705 atomic regions from SNP 117014 to 117614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,604 DEBUG Processing 326/664 atomic regions from SNP 97658 to 98258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,624 DEBUG Processing 658/710 atomic regions from SNP 197103 to 197703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,678 DEBUG Processing 173/640 atomic regions from SNP 51659 to 52259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:52:59,811 DEBUG Processing 392/705 atomic regions from SNP 117314 to 117914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:52:59,852 DEBUG Processing 327/664 atomic regions from SNP 97958 to 98558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:52:59,878 DEBUG Processing 659/710 atomic regions from SNP 197403 to 198003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,911 DEBUG Processing 174/640 atomic regions from SNP 51959 to 52559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,078 DEBUG Processing 393/705 atomic regions from SNP 117614 to 118214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,100 DEBUG Processing 328/664 atomic regions from SNP 98258 to 98858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,132 DEBUG Processing 660/710 atomic regions from SNP 197703 to 198303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,141 DEBUG Processing 175/640 atomic regions from SNP 52259 to 52859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,318 DEBUG Processing 329/664 atomic regions from SNP 98558 to 99158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,333 DEBUG Processing 394/705 atomic regions from SNP 117914 to 118514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,378 DEBUG Processing 176/640 atomic regions from SNP 52559 to 53159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,398 DEBUG Processing 661/710 atomic regions from SNP 198003 to 198603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,536 DEBUG Processing 330/664 atomic regions from SNP 98858 to 99458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,582 DEBUG Processing 395/705 atomic regions from SNP 118214 to 118814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,602 DEBUG Segmenting atomic regions: 2025-01-31 09:53:00,609 DEBUG Processing 177/640 atomic regions from SNP 52859 to 53459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,656 DEBUG Processing 662/710 atomic regions from SNP 198303 to 198903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,683 DEBUG Processing 1/582 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,755 DEBUG Processing 331/664 atomic regions from SNP 99158 to 99758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:00,828 DEBUG Processing 396/705 atomic regions from SNP 118514 to 119114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,833 DEBUG Processing 178/640 atomic regions from SNP 53159 to 53759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:00,902 DEBUG Processing 2/582 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:00,911 DEBUG Processing 663/710 atomic regions from SNP 198603 to 199203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,980 DEBUG Processing 332/664 atomic regions from SNP 99458 to 100058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,054 DEBUG Processing 179/640 atomic regions from SNP 53459 to 54059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,069 DEBUG Processing 397/705 atomic regions from SNP 118814 to 119414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,122 DEBUG Processing 3/582 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,165 DEBUG Processing 664/710 atomic regions from SNP 198903 to 199503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,211 DEBUG Processing 333/664 atomic regions from SNP 99758 to 100358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,271 DEBUG Processing 180/640 atomic regions from SNP 53759 to 54359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,313 DEBUG Processing 398/705 atomic regions from SNP 119114 to 119714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,331 DEBUG Processing 4/582 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,419 DEBUG Processing 665/710 atomic regions from SNP 199203 to 199803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,442 DEBUG Processing 334/664 atomic regions from SNP 100058 to 100658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,491 DEBUG Processing 181/640 atomic regions from SNP 54059 to 54659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,536 DEBUG Processing 5/582 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,553 DEBUG Processing 399/705 atomic regions from SNP 119414 to 120014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,672 DEBUG Processing 666/710 atomic regions from SNP 199503 to 200103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,673 DEBUG Processing 335/664 atomic regions from SNP 100358 to 100958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,715 DEBUG Processing 182/640 atomic regions from SNP 54359 to 54959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,781 DEBUG Processing 6/582 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:01,810 DEBUG Processing 400/705 atomic regions from SNP 119714 to 120314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,898 DEBUG Processing 336/664 atomic regions from SNP 100658 to 101258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:01,923 DEBUG Processing 667/710 atomic regions from SNP 199803 to 200403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,937 DEBUG Processing 183/640 atomic regions from SNP 54659 to 55259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:01,978 DEBUG Processing 7/582 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,048 DEBUG Processing 401/705 atomic regions from SNP 120014 to 120614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,121 DEBUG Processing 337/664 atomic regions from SNP 100958 to 101558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,160 DEBUG Processing 184/640 atomic regions from SNP 54959 to 55559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,173 DEBUG Processing 668/710 atomic regions from SNP 200103 to 200703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,181 DEBUG Processing 8/582 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,301 DEBUG Processing 402/705 atomic regions from SNP 120314 to 120914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,346 DEBUG Processing 338/664 atomic regions from SNP 101258 to 101858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,383 DEBUG Processing 185/640 atomic regions from SNP 55259 to 55859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,394 DEBUG Processing 9/582 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,421 DEBUG Processing 669/710 atomic regions from SNP 200403 to 201003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,564 DEBUG Processing 403/705 atomic regions from SNP 120614 to 121214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,565 DEBUG Processing 339/664 atomic regions from SNP 101558 to 102158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,601 DEBUG Processing 10/582 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,609 DEBUG Processing 186/640 atomic regions from SNP 55559 to 56159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,669 DEBUG Processing 670/710 atomic regions from SNP 200703 to 201303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,779 DEBUG Processing 340/664 atomic regions from SNP 101858 to 102458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:02,801 DEBUG Processing 404/705 atomic regions from SNP 120914 to 121514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,810 DEBUG Processing 11/582 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:02,830 DEBUG Processing 187/640 atomic regions from SNP 55859 to 56459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:02,912 DEBUG Processing 671/710 atomic regions from SNP 201003 to 201603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,991 DEBUG Processing 341/664 atomic regions from SNP 102158 to 102758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,033 DEBUG Processing 12/582 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,038 DEBUG Processing 405/705 atomic regions from SNP 121214 to 121814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,051 DEBUG Processing 188/640 atomic regions from SNP 56159 to 56759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,150 DEBUG Processing 672/710 atomic regions from SNP 201303 to 201903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,203 DEBUG Processing 342/664 atomic regions from SNP 102458 to 103058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,267 DEBUG Processing 13/582 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,277 DEBUG Processing 189/640 atomic regions from SNP 56459 to 57059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,279 DEBUG Processing 406/705 atomic regions from SNP 121514 to 122114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,391 DEBUG Processing 673/710 atomic regions from SNP 201603 to 202203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,428 DEBUG Processing 343/664 atomic regions from SNP 102758 to 103358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,476 DEBUG Processing 14/582 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,496 DEBUG Processing 190/640 atomic regions from SNP 56759 to 57359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,535 DEBUG Processing 407/705 atomic regions from SNP 121814 to 122414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,632 DEBUG Processing 674/710 atomic regions from SNP 201903 to 202503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,655 DEBUG Processing 344/664 atomic regions from SNP 103058 to 103658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,671 DEBUG Processing 15/582 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,721 DEBUG Processing 191/640 atomic regions from SNP 57059 to 57659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:03,779 DEBUG Processing 408/705 atomic regions from SNP 122114 to 122714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,873 DEBUG Processing 16/582 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:03,874 DEBUG Processing 675/710 atomic regions from SNP 202203 to 202803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,887 DEBUG Processing 345/664 atomic regions from SNP 103358 to 103958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:03,939 DEBUG Processing 192/640 atomic regions from SNP 57359 to 57959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,026 DEBUG Processing 409/705 atomic regions from SNP 122414 to 123014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,084 DEBUG Processing 17/582 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,113 DEBUG Processing 676/710 atomic regions from SNP 202503 to 203103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,135 DEBUG Processing 346/664 atomic regions from SNP 103658 to 104258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,151 DEBUG Processing 193/640 atomic regions from SNP 57659 to 58259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,270 DEBUG Processing 410/705 atomic regions from SNP 122714 to 123314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,297 DEBUG Processing 18/582 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,356 DEBUG Processing 677/710 atomic regions from SNP 202803 to 203403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,366 DEBUG Processing 194/640 atomic regions from SNP 57959 to 58559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,375 DEBUG Processing 347/664 atomic regions from SNP 103958 to 104558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,508 DEBUG Processing 19/582 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,514 DEBUG Processing 411/705 atomic regions from SNP 123014 to 123614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,585 DEBUG Processing 195/640 atomic regions from SNP 58259 to 58859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,604 DEBUG Processing 678/710 atomic regions from SNP 203103 to 203703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,608 DEBUG Processing 348/664 atomic regions from SNP 104258 to 104858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,725 DEBUG Processing 20/582 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:04,765 DEBUG Processing 412/705 atomic regions from SNP 123314 to 123914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,811 DEBUG Processing 196/640 atomic regions from SNP 58559 to 59159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:04,846 DEBUG Processing 349/664 atomic regions from SNP 104558 to 105158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:04,856 DEBUG Processing 679/710 atomic regions from SNP 203403 to 204003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,955 DEBUG Processing 21/582 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,001 DEBUG Processing 413/705 atomic regions from SNP 123614 to 124214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,035 DEBUG Processing 197/640 atomic regions from SNP 58859 to 59459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,092 DEBUG Processing 350/664 atomic regions from SNP 104858 to 105458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,104 DEBUG Processing 680/710 atomic regions from SNP 203703 to 204303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,191 DEBUG Processing 22/582 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,241 DEBUG Processing 414/705 atomic regions from SNP 123914 to 124514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,258 DEBUG Processing 198/640 atomic regions from SNP 59159 to 59759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,336 DEBUG Processing 351/664 atomic regions from SNP 105158 to 105758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,374 DEBUG Processing 681/710 atomic regions from SNP 204003 to 204603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,412 DEBUG Processing 23/582 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,482 DEBUG Processing 199/640 atomic regions from SNP 59459 to 60059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,486 DEBUG Processing 415/705 atomic regions from SNP 124214 to 124814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,573 DEBUG Processing 352/664 atomic regions from SNP 105458 to 106058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,631 DEBUG Processing 24/582 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,640 DEBUG Processing 682/710 atomic regions from SNP 204303 to 204903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,711 DEBUG Processing 200/640 atomic regions from SNP 59759 to 60359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:05,763 DEBUG Processing 416/705 atomic regions from SNP 124514 to 125114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,801 DEBUG Processing 353/664 atomic regions from SNP 105758 to 106358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:05,855 DEBUG Processing 25/582 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:05,896 DEBUG Processing 683/710 atomic regions from SNP 204603 to 205203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,942 DEBUG Processing 201/640 atomic regions from SNP 60059 to 60659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,024 DEBUG Processing 354/664 atomic regions from SNP 106058 to 106658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,028 DEBUG Processing 417/705 atomic regions from SNP 124814 to 125414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,064 DEBUG Processing 26/582 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,146 DEBUG Processing 684/710 atomic regions from SNP 204903 to 205503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,171 DEBUG Processing 202/640 atomic regions from SNP 60359 to 60959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,249 DEBUG Processing 355/664 atomic regions from SNP 106358 to 106958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,269 DEBUG Processing 27/582 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,281 DEBUG Processing 418/705 atomic regions from SNP 125114 to 125714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,399 DEBUG Processing 685/710 atomic regions from SNP 205203 to 205803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,400 DEBUG Processing 203/640 atomic regions from SNP 60659 to 61259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,497 DEBUG Processing 28/582 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,502 DEBUG Processing 356/664 atomic regions from SNP 106658 to 107258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,544 DEBUG Processing 419/705 atomic regions from SNP 125414 to 126014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,627 DEBUG Processing 204/640 atomic regions from SNP 60959 to 61559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,677 DEBUG Processing 686/710 atomic regions from SNP 205503 to 206103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,728 DEBUG Processing 357/664 atomic regions from SNP 106958 to 107558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,729 DEBUG Processing 29/582 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:06,809 DEBUG Processing 420/705 atomic regions from SNP 125714 to 126314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,846 DEBUG Processing 205/640 atomic regions from SNP 61259 to 61859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:06,949 DEBUG Processing 687/710 atomic regions from SNP 205803 to 206403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,954 DEBUG Processing 358/664 atomic regions from SNP 107258 to 107858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:06,967 DEBUG Processing 30/582 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,067 DEBUG Processing 206/640 atomic regions from SNP 61559 to 62159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,090 DEBUG Processing 421/705 atomic regions from SNP 126014 to 126614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,175 DEBUG Processing 359/664 atomic regions from SNP 107558 to 108158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,201 DEBUG Processing 31/582 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,205 DEBUG Processing 688/710 atomic regions from SNP 206103 to 206703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,283 DEBUG Processing 207/640 atomic regions from SNP 61859 to 62459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,348 DEBUG Processing 422/705 atomic regions from SNP 126314 to 126914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,395 DEBUG Processing 360/664 atomic regions from SNP 107858 to 108458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,436 DEBUG Processing 32/582 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,488 DEBUG Processing 689/710 atomic regions from SNP 206403 to 207003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,508 DEBUG Processing 208/640 atomic regions from SNP 62159 to 62759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,597 DEBUG Processing 423/705 atomic regions from SNP 126614 to 127214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,612 DEBUG Processing 361/664 atomic regions from SNP 108158 to 108758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,672 DEBUG Processing 33/582 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,737 DEBUG Processing 209/640 atomic regions from SNP 62459 to 63059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:07,752 DEBUG Processing 690/710 atomic regions from SNP 206703 to 207303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,830 DEBUG Processing 362/664 atomic regions from SNP 108458 to 109058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:07,837 DEBUG Processing 424/705 atomic regions from SNP 126914 to 127514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,911 DEBUG Processing 34/582 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:07,966 DEBUG Processing 210/640 atomic regions from SNP 62759 to 63359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,016 DEBUG Processing 691/710 atomic regions from SNP 207003 to 207603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,054 DEBUG Processing 363/664 atomic regions from SNP 108758 to 109358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,081 DEBUG Processing 425/705 atomic regions from SNP 127214 to 127814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,134 DEBUG Processing 35/582 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,193 DEBUG Processing 211/640 atomic regions from SNP 63059 to 63659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,274 DEBUG Processing 692/710 atomic regions from SNP 207303 to 207903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,277 DEBUG Processing 364/664 atomic regions from SNP 109058 to 109658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,338 DEBUG Processing 426/705 atomic regions from SNP 127514 to 128114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,363 DEBUG Processing 36/582 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,428 DEBUG Processing 212/640 atomic regions from SNP 63359 to 63959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,508 DEBUG Processing 365/664 atomic regions from SNP 109358 to 109958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,540 DEBUG Processing 693/710 atomic regions from SNP 207603 to 208203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,586 DEBUG Processing 37/582 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,587 DEBUG Processing 427/705 atomic regions from SNP 127814 to 128414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,652 DEBUG Processing 213/640 atomic regions from SNP 63659 to 64259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,736 DEBUG Processing 366/664 atomic regions from SNP 109658 to 110258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:08,819 DEBUG Processing 694/710 atomic regions from SNP 207903 to 208503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,827 DEBUG Processing 38/582 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:08,843 DEBUG Processing 428/705 atomic regions from SNP 128114 to 128714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,871 DEBUG Segmenting atomic regions: 2025-01-31 09:53:08,882 DEBUG Processing 214/640 atomic regions from SNP 63959 to 64559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:08,945 DEBUG Processing 1/544 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:08,968 DEBUG Processing 367/664 atomic regions from SNP 109958 to 110558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,051 DEBUG Processing 39/582 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,072 DEBUG Processing 695/710 atomic regions from SNP 208203 to 208803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,095 DEBUG Processing 429/705 atomic regions from SNP 128414 to 129014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,110 DEBUG Processing 215/640 atomic regions from SNP 64259 to 64859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,152 DEBUG Processing 2/544 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:09,204 DEBUG Processing 368/664 atomic regions from SNP 110258 to 110858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,265 DEBUG Processing 40/582 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,345 DEBUG Processing 216/640 atomic regions from SNP 64559 to 65159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,351 DEBUG Processing 430/705 atomic regions from SNP 128714 to 129314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,353 DEBUG Processing 696/710 atomic regions from SNP 208503 to 209103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,368 DEBUG Processing 3/544 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:09,434 DEBUG Processing 369/664 atomic regions from SNP 110558 to 111158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,478 DEBUG Processing 41/582 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,575 DEBUG Processing 217/640 atomic regions from SNP 64859 to 65459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,586 DEBUG Processing 4/544 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:09,604 DEBUG Processing 431/705 atomic regions from SNP 129014 to 129614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,638 DEBUG Processing 697/710 atomic regions from SNP 208803 to 209403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,676 DEBUG Processing 370/664 atomic regions from SNP 110858 to 111458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,696 DEBUG Processing 42/582 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:09,796 DEBUG Processing 5/544 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:09,800 DEBUG Processing 218/640 atomic regions from SNP 65159 to 65759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:09,864 DEBUG Processing 432/705 atomic regions from SNP 129314 to 129914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,897 DEBUG Processing 698/710 atomic regions from SNP 209103 to 209703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,934 DEBUG Processing 371/664 atomic regions from SNP 111158 to 111758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:09,935 DEBUG Processing 43/582 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,000 DEBUG Processing 6/544 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:10,020 DEBUG Processing 219/640 atomic regions from SNP 65459 to 66059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,151 DEBUG Processing 433/705 atomic regions from SNP 129614 to 130214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,155 DEBUG Processing 699/710 atomic regions from SNP 209403 to 210003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,177 DEBUG Processing 372/664 atomic regions from SNP 111458 to 112058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,183 DEBUG Processing 44/582 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,230 DEBUG Processing 7/544 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:10,244 DEBUG Processing 220/640 atomic regions from SNP 65759 to 66359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,416 DEBUG Processing 373/664 atomic regions from SNP 111758 to 112358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,416 DEBUG Processing 45/582 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,423 DEBUG Processing 434/705 atomic regions from SNP 129914 to 130514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,426 DEBUG Processing 700/710 atomic regions from SNP 209703 to 210303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,469 DEBUG Processing 8/544 atomic regions from SNP 2107 to 2707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:10,472 DEBUG Processing 221/640 atomic regions from SNP 66059 to 66659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,653 DEBUG Processing 374/664 atomic regions from SNP 112058 to 112658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,657 DEBUG Processing 46/582 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,686 DEBUG Processing 701/710 atomic regions from SNP 210003 to 210603 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,695 DEBUG Processing 435/705 atomic regions from SNP 130214 to 130814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,702 DEBUG Processing 222/640 atomic regions from SNP 66359 to 66959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,703 DEBUG Processing 9/544 atomic regions from SNP 2407 to 3007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:10,886 DEBUG Processing 375/664 atomic regions from SNP 112358 to 112958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:10,900 DEBUG Processing 47/582 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:10,934 DEBUG Processing 223/640 atomic regions from SNP 66659 to 67259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:10,943 DEBUG Processing 702/710 atomic regions from SNP 210303 to 210903 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,946 DEBUG Processing 10/544 atomic regions from SNP 2707 to 3307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:10,978 DEBUG Processing 436/705 atomic regions from SNP 130514 to 131114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,120 DEBUG Processing 376/664 atomic regions from SNP 112658 to 113258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,129 DEBUG Processing 48/582 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,167 DEBUG Processing 224/640 atomic regions from SNP 66959 to 67559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,177 DEBUG Processing 11/544 atomic regions from SNP 3007 to 3607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:11,201 DEBUG Processing 703/710 atomic regions from SNP 210603 to 211203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,257 DEBUG Processing 437/705 atomic regions from SNP 130814 to 131414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,347 DEBUG Processing 377/664 atomic regions from SNP 112958 to 113558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,369 DEBUG Processing 49/582 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,397 DEBUG Processing 225/640 atomic regions from SNP 67259 to 67859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,407 DEBUG Processing 12/544 atomic regions from SNP 3307 to 3907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:11,456 DEBUG Processing 704/710 atomic regions from SNP 210903 to 211503 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,525 DEBUG Processing 438/705 atomic regions from SNP 131114 to 131714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,572 DEBUG Processing 378/664 atomic regions from SNP 113258 to 113858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,594 DEBUG Processing 50/582 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,618 DEBUG Processing 13/544 atomic regions from SNP 3607 to 4207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:11,621 DEBUG Processing 226/640 atomic regions from SNP 67559 to 68159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,729 DEBUG Processing 705/710 atomic regions from SNP 211203 to 211803 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,816 DEBUG Processing 439/705 atomic regions from SNP 131414 to 132014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,823 DEBUG Processing 379/664 atomic regions from SNP 113558 to 114158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:11,829 DEBUG Processing 51/582 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:11,848 DEBUG Processing 14/544 atomic regions from SNP 3907 to 4507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:11,874 DEBUG Processing 227/640 atomic regions from SNP 67859 to 68459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:11,997 DEBUG Processing 706/710 atomic regions from SNP 211503 to 212103 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,052 DEBUG Processing 380/664 atomic regions from SNP 113858 to 114458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,054 DEBUG Processing 52/582 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,056 DEBUG Processing 15/544 atomic regions from SNP 4207 to 4807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:12,065 DEBUG Processing 440/705 atomic regions from SNP 131714 to 132314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,099 DEBUG Processing 228/640 atomic regions from SNP 68159 to 68759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,248 DEBUG Processing 707/710 atomic regions from SNP 211803 to 212403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,263 DEBUG Processing 16/544 atomic regions from SNP 4507 to 5107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:12,283 DEBUG Processing 381/664 atomic regions from SNP 114158 to 114758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,306 DEBUG Processing 53/582 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,312 DEBUG Processing 441/705 atomic regions from SNP 132014 to 132614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,320 DEBUG Processing 229/640 atomic regions from SNP 68459 to 69059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,482 DEBUG Processing 17/544 atomic regions from SNP 4807 to 5407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:12,504 DEBUG Processing 708/710 atomic regions from SNP 212103 to 212703 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,518 DEBUG Processing 382/664 atomic regions from SNP 114458 to 115058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,544 DEBUG Processing 230/640 atomic regions from SNP 68759 to 69359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,559 DEBUG Processing 442/705 atomic regions from SNP 132314 to 132914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,563 DEBUG Processing 54/582 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,697 DEBUG Processing 18/544 atomic regions from SNP 5107 to 5707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:12,759 DEBUG Processing 383/664 atomic regions from SNP 114758 to 115358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:12,762 DEBUG Processing 709/710 atomic regions from SNP 212403 to 213003 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,776 DEBUG Processing 231/640 atomic regions from SNP 69059 to 69659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:12,807 DEBUG Processing 443/705 atomic regions from SNP 132614 to 133214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,819 DEBUG Processing 55/582 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:12,910 DEBUG Processing 19/544 atomic regions from SNP 5407 to 6007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:12,998 DEBUG Processing 384/664 atomic regions from SNP 115058 to 115658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,009 DEBUG Processing 232/640 atomic regions from SNP 69359 to 69959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,019 DEBUG Processing 710/710 atomic regions from SNP 212703 to 213303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,056 DEBUG Processing 444/705 atomic regions from SNP 132914 to 133514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,069 DEBUG Processing 56/582 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,120 DEBUG Processing 20/544 atomic regions from SNP 5707 to 6307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:13,206 DEBUG Unique SNPs positions in subchromosome 1: 213304 2025-01-31 09:53:13,231 DEBUG Processing 385/664 atomic regions from SNP 115358 to 115958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,239 DEBUG Processing 233/640 atomic regions from SNP 69659 to 70259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,311 DEBUG Processing 445/705 atomic regions from SNP 133214 to 133814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,314 DEBUG Processing 57/582 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,328 DEBUG Processing 21/544 atomic regions from SNP 6007 to 6607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:13,462 DEBUG Processing 386/664 atomic regions from SNP 115658 to 116258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,462 DEBUG Processing 234/640 atomic regions from SNP 69959 to 70559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,538 DEBUG Processing 22/544 atomic regions from SNP 6307 to 6907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:13,564 DEBUG Processing 446/705 atomic regions from SNP 133514 to 134114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,567 DEBUG Processing 58/582 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,677 DEBUG Processing 235/640 atomic regions from SNP 70259 to 70859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,710 DEBUG Processing 387/664 atomic regions from SNP 115958 to 116558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:13,758 DEBUG Processing 23/544 atomic regions from SNP 6607 to 7207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:13,812 DEBUG Processing 59/582 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:13,835 DEBUG Processing 447/705 atomic regions from SNP 133814 to 134414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,896 DEBUG Processing 236/640 atomic regions from SNP 70559 to 71159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:13,966 DEBUG Processing 24/544 atomic regions from SNP 6907 to 7507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:13,968 DEBUG Processing 388/664 atomic regions from SNP 116258 to 116858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,034 DEBUG Processing 60/582 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:14,084 DEBUG Processing 448/705 atomic regions from SNP 134114 to 134714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,118 DEBUG Processing 237/640 atomic regions from SNP 70859 to 71459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,174 DEBUG Processing 25/544 atomic regions from SNP 7207 to 7807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:14,198 DEBUG Processing 389/664 atomic regions from SNP 116558 to 117158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,253 DEBUG Processing 61/582 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:14,348 DEBUG Processing 238/640 atomic regions from SNP 71159 to 71759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,349 DEBUG Processing 449/705 atomic regions from SNP 134414 to 135014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,388 DEBUG Processing 26/544 atomic regions from SNP 7507 to 8107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:14,435 DEBUG Processing 390/664 atomic regions from SNP 116858 to 117458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,475 DEBUG Processing 62/582 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:14,573 DEBUG Processing 239/640 atomic regions from SNP 71459 to 72059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,599 DEBUG Processing 27/544 atomic regions from SNP 7807 to 8407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:14,604 DEBUG Processing 450/705 atomic regions from SNP 134714 to 135314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,673 DEBUG Processing 391/664 atomic regions from SNP 117158 to 117758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,696 DEBUG Processing 63/582 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:14,792 DEBUG Processing 240/640 atomic regions from SNP 71759 to 72359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:14,803 DEBUG Processing 28/544 atomic regions from SNP 8107 to 8707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:14,848 DEBUG Processing 451/705 atomic regions from SNP 135014 to 135614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,907 DEBUG Processing 392/664 atomic regions from SNP 117458 to 118058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:14,915 DEBUG Processing 64/582 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:15,005 DEBUG Processing 29/544 atomic regions from SNP 8407 to 9007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:15,014 DEBUG Processing 241/640 atomic regions from SNP 72059 to 72659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,097 DEBUG Processing 452/705 atomic regions from SNP 135314 to 135914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,141 DEBUG Processing 65/582 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:15,163 DEBUG Processing 393/664 atomic regions from SNP 117758 to 118358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,216 DEBUG Processing 30/544 atomic regions from SNP 8707 to 9307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:15,235 DEBUG Processing 242/640 atomic regions from SNP 72359 to 72959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,343 DEBUG Processing 453/705 atomic regions from SNP 135614 to 136214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,355 DEBUG Processing 66/582 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:15,427 DEBUG Processing 31/544 atomic regions from SNP 9007 to 9607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:15,429 DEBUG Processing 394/664 atomic regions from SNP 118058 to 118658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,454 DEBUG Processing 243/640 atomic regions from SNP 72659 to 73259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,559 DEBUG Processing 67/582 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:15,582 DEBUG Processing 454/705 atomic regions from SNP 135914 to 136514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,660 DEBUG Processing 32/544 atomic regions from SNP 9307 to 9907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:15,677 DEBUG Processing 244/640 atomic regions from SNP 72959 to 73559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,692 DEBUG Processing 395/664 atomic regions from SNP 118358 to 118958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,764 DEBUG Processing 68/582 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:15,816 DEBUG Processing 455/705 atomic regions from SNP 136214 to 136814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,892 DEBUG Processing 33/544 atomic regions from SNP 9607 to 10207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:15,898 DEBUG Processing 245/640 atomic regions from SNP 73259 to 73859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:15,946 DEBUG Processing 396/664 atomic regions from SNP 118658 to 119258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:15,979 DEBUG Processing 69/582 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:16,055 DEBUG Processing 456/705 atomic regions from SNP 136514 to 137114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,103 DEBUG Processing 34/544 atomic regions from SNP 9907 to 10507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:16,117 DEBUG Processing 246/640 atomic regions from SNP 73559 to 74159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,200 DEBUG Processing 70/582 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:16,200 DEBUG Processing 397/664 atomic regions from SNP 118958 to 119558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,294 DEBUG Processing 457/705 atomic regions from SNP 136814 to 137414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,308 DEBUG Processing 35/544 atomic regions from SNP 10207 to 10807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:16,339 DEBUG Processing 247/640 atomic regions from SNP 73859 to 74459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,418 DEBUG Processing 71/582 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:16,455 DEBUG Processing 398/664 atomic regions from SNP 119258 to 119858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,519 DEBUG Processing 36/544 atomic regions from SNP 10507 to 11107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:16,537 DEBUG Processing 458/705 atomic regions from SNP 137114 to 137714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,567 DEBUG Processing 248/640 atomic regions from SNP 74159 to 74759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,643 DEBUG Processing 72/582 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:16,703 DEBUG Processing 399/664 atomic regions from SNP 119558 to 120158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:16,723 DEBUG Processing 37/544 atomic regions from SNP 10807 to 11407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:16,770 DEBUG Processing 459/705 atomic regions from SNP 137414 to 138014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,795 DEBUG Processing 249/640 atomic regions from SNP 74459 to 75059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:16,855 DEBUG Processing 73/582 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:16,924 DEBUG Processing 38/544 atomic regions from SNP 11107 to 11707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:16,927 DEBUG Processing 400/664 atomic regions from SNP 119858 to 120458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,007 DEBUG Processing 460/705 atomic regions from SNP 137714 to 138314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,041 DEBUG Processing 250/640 atomic regions from SNP 74759 to 75359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,070 DEBUG Processing 74/582 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:17,134 DEBUG Processing 39/544 atomic regions from SNP 11407 to 12007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:17,161 DEBUG Processing 401/664 atomic regions from SNP 120158 to 120758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,237 DEBUG Processing 461/705 atomic regions from SNP 138014 to 138614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,279 DEBUG Processing 251/640 atomic regions from SNP 75059 to 75659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,288 DEBUG Processing 75/582 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:17,344 DEBUG Processing 40/544 atomic regions from SNP 11707 to 12307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:17,412 DEBUG Processing 402/664 atomic regions from SNP 120458 to 121058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,480 DEBUG Processing 462/705 atomic regions from SNP 138314 to 138914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,508 DEBUG Processing 252/640 atomic regions from SNP 75359 to 75959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,513 DEBUG Processing 76/582 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:17,564 DEBUG Processing 41/544 atomic regions from SNP 12007 to 12607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:17,648 DEBUG Processing 403/664 atomic regions from SNP 120758 to 121358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,730 DEBUG Processing 463/705 atomic regions from SNP 138614 to 139214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,739 DEBUG Processing 253/640 atomic regions from SNP 75659 to 76259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,744 DEBUG Processing 77/582 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:17,785 DEBUG Processing 42/544 atomic regions from SNP 12307 to 12907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:17,884 DEBUG Processing 404/664 atomic regions from SNP 121058 to 121658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:17,961 DEBUG Processing 78/582 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:17,964 DEBUG Processing 254/640 atomic regions from SNP 75959 to 76559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:17,974 DEBUG Processing 464/705 atomic regions from SNP 138914 to 139514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,005 DEBUG Processing 43/544 atomic regions from SNP 12607 to 13207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:18,120 DEBUG Processing 405/664 atomic regions from SNP 121358 to 121958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,173 DEBUG Processing 79/582 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:18,194 DEBUG Processing 255/640 atomic regions from SNP 76259 to 76859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,220 DEBUG Processing 465/705 atomic regions from SNP 139214 to 139814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,241 DEBUG Processing 44/544 atomic regions from SNP 12907 to 13507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:18,348 DEBUG Processing 406/664 atomic regions from SNP 121658 to 122258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,383 DEBUG Processing 80/582 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:18,418 DEBUG Processing 256/640 atomic regions from SNP 76559 to 77159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,459 DEBUG Processing 45/544 atomic regions from SNP 13207 to 13807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:18,489 DEBUG Processing 466/705 atomic regions from SNP 139514 to 140114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,577 DEBUG Processing 407/664 atomic regions from SNP 121958 to 122558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,598 DEBUG Processing 81/582 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:18,632 DEBUG Processing 257/640 atomic regions from SNP 76859 to 77459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,635 DEBUG Subchromosome time: 212.70737481862307, subchromosome SNPs: 213304 2025-01-31 09:53:18,636 DEBUG Estimated BADs: [0.57, 1.71, 0.86, 10.28, 1.71, 0.86, 1.71, 0.43, 1.71, 13.70, 1.71, 5.14, 1.71, 0.86, 3.43, 0.29, 1.71, 5.14, 1.71, 3.43] SNP counts: [16236, 3060, 8894, 3162, 5946, 9804, 11481, 4470, 6247, 756, 21863, 19863, 21520, 18481, 701, 5394, 22342, 8010, 15864, 9210] SNP IDs counts: [16236, 3060, 8894, 3162, 5946, 9804, 11481, 4470, 6247, 756, 21863, 19863, 21520, 18481, 701, 5394, 22342, 8010, 15864, 9210] Critical gap: 604204bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.29Mbp, 15.04Mbp, 20.64Mbp, 22.31Mbp, 25.71Mbp, 31.20Mbp, 37.81Mbp, 40.76Mbp, 44.06Mbp, 44.48Mbp, 56.41Mbp, 66.91Mbp, 78.79Mbp, 90.11Mbp, 90.54Mbp, 94.02Mbp, 106.15Mbp, 110.62Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:53:18,636 DEBUG chr9 time: 212.7079228758812 s 2025-01-31 09:53:18,674 DEBUG Processing 46/544 atomic regions from SNP 13507 to 14107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:18,744 DEBUG Processing 467/705 atomic regions from SNP 139814 to 140414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,768 DEBUG chr9: Fitting background model for 20 segments 2025-01-31 09:53:18,807 DEBUG Processing 408/664 atomic regions from SNP 122258 to 122858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:18,813 DEBUG Processing 82/582 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:18,854 DEBUG Processing 258/640 atomic regions from SNP 77159 to 77759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:18,894 DEBUG Processing 47/544 atomic regions from SNP 13807 to 14407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:18,987 DEBUG Processing 468/705 atomic regions from SNP 140114 to 140714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,031 DEBUG Processing 83/582 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:19,038 DEBUG Processing 409/664 atomic regions from SNP 122558 to 123158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,085 DEBUG Processing 259/640 atomic regions from SNP 77459 to 78059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,133 DEBUG Processing 48/544 atomic regions from SNP 14107 to 14707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:19,247 DEBUG Processing 84/582 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:19,265 DEBUG Processing 469/705 atomic regions from SNP 140414 to 141014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,276 DEBUG Processing 410/664 atomic regions from SNP 122858 to 123458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,308 DEBUG Processing 260/640 atomic regions from SNP 77759 to 78359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,346 DEBUG Processing 49/544 atomic regions from SNP 14407 to 15007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:19,460 DEBUG Processing 85/582 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:19,499 DEBUG Processing 470/705 atomic regions from SNP 140714 to 141314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,503 DEBUG Processing 411/664 atomic regions from SNP 123158 to 123758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,527 DEBUG Processing 261/640 atomic regions from SNP 78059 to 78659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,553 DEBUG Processing 50/544 atomic regions from SNP 14707 to 15307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:19,667 DEBUG Processing 86/582 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:19,724 DEBUG Processing 412/664 atomic regions from SNP 123458 to 124058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,734 DEBUG Processing 471/705 atomic regions from SNP 141014 to 141614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,748 DEBUG Processing 262/640 atomic regions from SNP 78359 to 78959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,756 DEBUG Processing 51/544 atomic regions from SNP 15007 to 15607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:19,876 DEBUG Processing 87/582 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:19,948 DEBUG Processing 413/664 atomic regions from SNP 123758 to 124358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:19,959 DEBUG Processing 52/544 atomic regions from SNP 15307 to 15907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:19,972 DEBUG Processing 263/640 atomic regions from SNP 78659 to 79259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:19,977 DEBUG Processing 472/705 atomic regions from SNP 141314 to 141914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,090 DEBUG Processing 88/582 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:20,165 DEBUG Processing 53/544 atomic regions from SNP 15607 to 16207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:20,180 DEBUG Processing 414/664 atomic regions from SNP 124058 to 124658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,190 DEBUG Processing 264/640 atomic regions from SNP 78959 to 79559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,216 DEBUG Processing 473/705 atomic regions from SNP 141614 to 142214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,306 DEBUG Processing 89/582 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:20,379 DEBUG Processing 54/544 atomic regions from SNP 15907 to 16507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:20,416 DEBUG Processing 415/664 atomic regions from SNP 124358 to 124958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,420 DEBUG Processing 265/640 atomic regions from SNP 79259 to 79859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,461 DEBUG Processing 474/705 atomic regions from SNP 141914 to 142514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,516 DEBUG Processing 90/582 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:20,587 DEBUG Processing 55/544 atomic regions from SNP 16207 to 16807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:20,637 DEBUG Processing 266/640 atomic regions from SNP 79559 to 80159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,647 DEBUG Processing 416/664 atomic regions from SNP 124658 to 125258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,702 DEBUG Processing 475/705 atomic regions from SNP 142214 to 142814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,728 DEBUG Processing 91/582 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:20,797 DEBUG Processing 56/544 atomic regions from SNP 16507 to 17107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:20,877 DEBUG Processing 267/640 atomic regions from SNP 79859 to 80459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:20,880 DEBUG Processing 417/664 atomic regions from SNP 124958 to 125558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:20,946 DEBUG Processing 92/582 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:20,951 DEBUG Processing 476/705 atomic regions from SNP 142514 to 143114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,013 DEBUG Processing 57/544 atomic regions from SNP 16807 to 17407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:21,115 DEBUG Processing 418/664 atomic regions from SNP 125258 to 125858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,124 DEBUG Processing 268/640 atomic regions from SNP 80159 to 80759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,161 DEBUG Processing 93/582 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:21,221 DEBUG Processing 58/544 atomic regions from SNP 17107 to 17707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:21,306 DEBUG Processing 477/705 atomic regions from SNP 142814 to 143414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,341 DEBUG Processing 419/664 atomic regions from SNP 125558 to 126158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,356 DEBUG Processing 269/640 atomic regions from SNP 80459 to 81059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,374 DEBUG Processing 94/582 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:21,431 DEBUG Processing 59/544 atomic regions from SNP 17407 to 18007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:21,565 DEBUG Processing 420/664 atomic regions from SNP 125858 to 126458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,581 DEBUG Processing 478/705 atomic regions from SNP 143114 to 143714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,585 DEBUG Processing 95/582 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:21,596 DEBUG Processing 270/640 atomic regions from SNP 80759 to 81359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,640 DEBUG Processing 60/544 atomic regions from SNP 17707 to 18307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:21,806 DEBUG Processing 421/664 atomic regions from SNP 126158 to 126758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:21,816 DEBUG Processing 96/582 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:21,860 DEBUG Processing 61/544 atomic regions from SNP 18007 to 18607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:21,861 DEBUG Processing 271/640 atomic regions from SNP 81059 to 81659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:21,880 DEBUG Processing 479/705 atomic regions from SNP 143414 to 144014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,024 DEBUG Processing 97/582 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:22,058 DEBUG Processing 422/664 atomic regions from SNP 126458 to 127058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,080 DEBUG Processing 62/544 atomic regions from SNP 18307 to 18907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:22,098 DEBUG Processing 272/640 atomic regions from SNP 81359 to 81959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,119 DEBUG Processing 480/705 atomic regions from SNP 143714 to 144314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,240 DEBUG Processing 98/582 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:22,285 DEBUG Processing 423/664 atomic regions from SNP 126758 to 127358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,307 DEBUG Processing 63/544 atomic regions from SNP 18607 to 19207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:22,323 DEBUG Processing 273/640 atomic regions from SNP 81659 to 82259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,376 DEBUG Processing 481/705 atomic regions from SNP 144014 to 144614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,453 DEBUG Processing 99/582 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:22,514 DEBUG Processing 424/664 atomic regions from SNP 127058 to 127658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,522 DEBUG Processing 64/544 atomic regions from SNP 18907 to 19507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:22,552 DEBUG Processing 274/640 atomic regions from SNP 81959 to 82559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,623 DEBUG Processing 482/705 atomic regions from SNP 144314 to 144914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,663 DEBUG Processing 100/582 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:22,728 DEBUG Processing 65/544 atomic regions from SNP 19207 to 19807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:22,744 DEBUG Processing 425/664 atomic regions from SNP 127358 to 127958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:22,790 DEBUG Processing 275/640 atomic regions from SNP 82259 to 82859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:22,875 DEBUG Processing 483/705 atomic regions from SNP 144614 to 145214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,876 DEBUG Processing 101/582 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:22,947 DEBUG Processing 66/544 atomic regions from SNP 19507 to 20107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:22,971 DEBUG Processing 426/664 atomic regions from SNP 127658 to 128258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,026 DEBUG Processing 276/640 atomic regions from SNP 82559 to 83159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,093 DEBUG Processing 102/582 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:23,140 DEBUG Processing 484/705 atomic regions from SNP 144914 to 145514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,152 DEBUG Processing 67/544 atomic regions from SNP 19807 to 20407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:23,192 DEBUG Processing 427/664 atomic regions from SNP 127958 to 128558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,254 DEBUG Processing 277/640 atomic regions from SNP 82859 to 83459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,306 DEBUG Processing 103/582 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:23,359 DEBUG Processing 68/544 atomic regions from SNP 20107 to 20707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:23,411 DEBUG Processing 485/705 atomic regions from SNP 145214 to 145814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,418 DEBUG Processing 428/664 atomic regions from SNP 128258 to 128858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,479 DEBUG Processing 278/640 atomic regions from SNP 83159 to 83759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,518 DEBUG Processing 104/582 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:23,564 DEBUG Processing 69/544 atomic regions from SNP 20407 to 21007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:23,646 DEBUG Processing 429/664 atomic regions from SNP 128558 to 129158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,659 DEBUG Processing 486/705 atomic regions from SNP 145514 to 146114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,714 DEBUG Processing 279/640 atomic regions from SNP 83459 to 84059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,730 DEBUG Processing 105/582 atomic regions from SNP 31304 to 31904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:23,768 DEBUG Processing 70/544 atomic regions from SNP 20707 to 21307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:23,877 DEBUG Processing 430/664 atomic regions from SNP 128858 to 129458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:23,920 DEBUG Processing 487/705 atomic regions from SNP 145814 to 146414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,940 DEBUG Processing 106/582 atomic regions from SNP 31604 to 32204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:23,960 DEBUG Processing 280/640 atomic regions from SNP 83759 to 84359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:23,973 DEBUG Processing 71/544 atomic regions from SNP 21007 to 21607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:24,106 DEBUG Processing 431/664 atomic regions from SNP 129158 to 129758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,152 DEBUG Processing 107/582 atomic regions from SNP 31904 to 32504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:24,176 DEBUG Processing 488/705 atomic regions from SNP 146114 to 146714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,178 DEBUG Processing 72/544 atomic regions from SNP 21307 to 21907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:24,196 DEBUG Processing 281/640 atomic regions from SNP 84059 to 84659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,331 DEBUG Processing 432/664 atomic regions from SNP 129458 to 130058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,362 DEBUG Processing 108/582 atomic regions from SNP 32204 to 32804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:24,383 DEBUG Processing 73/544 atomic regions from SNP 21607 to 22207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:24,427 DEBUG Processing 282/640 atomic regions from SNP 84359 to 84959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,429 DEBUG Processing 489/705 atomic regions from SNP 146414 to 147014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,554 DEBUG Processing 433/664 atomic regions from SNP 129758 to 130358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,566 DEBUG Processing 109/582 atomic regions from SNP 32504 to 33104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:24,585 DEBUG Processing 74/544 atomic regions from SNP 21907 to 22507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:24,658 DEBUG Processing 283/640 atomic regions from SNP 84659 to 85259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,688 DEBUG Processing 490/705 atomic regions from SNP 146714 to 147314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,771 DEBUG Processing 110/582 atomic regions from SNP 32804 to 33404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:24,779 DEBUG Processing 434/664 atomic regions from SNP 130058 to 130658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:24,784 DEBUG Processing 75/544 atomic regions from SNP 22207 to 22807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:24,883 DEBUG Processing 284/640 atomic regions from SNP 84959 to 85559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:24,942 DEBUG Processing 491/705 atomic regions from SNP 147014 to 147614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,980 DEBUG Processing 111/582 atomic regions from SNP 33104 to 33704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:24,990 DEBUG Processing 76/544 atomic regions from SNP 22507 to 23107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:25,008 DEBUG Processing 435/664 atomic regions from SNP 130358 to 130958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,102 DEBUG Processing 285/640 atomic regions from SNP 85259 to 85859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,187 DEBUG Processing 112/582 atomic regions from SNP 33404 to 34004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:25,195 DEBUG Processing 77/544 atomic regions from SNP 22807 to 23407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:25,197 DEBUG Processing 492/705 atomic regions from SNP 147314 to 147914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,260 DEBUG Processing 436/664 atomic regions from SNP 130658 to 131258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,326 DEBUG Processing 286/640 atomic regions from SNP 85559 to 86159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,393 DEBUG Processing 113/582 atomic regions from SNP 33704 to 34304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:25,398 DEBUG Processing 78/544 atomic regions from SNP 23107 to 23707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:25,447 DEBUG Processing 493/705 atomic regions from SNP 147614 to 148214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,500 DEBUG Processing 437/664 atomic regions from SNP 130958 to 131558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,554 DEBUG Processing 287/640 atomic regions from SNP 85859 to 86459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,593 DEBUG Processing 114/582 atomic regions from SNP 34004 to 34604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:25,595 DEBUG Processing 79/544 atomic regions from SNP 23407 to 24007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:25,712 DEBUG Processing 494/705 atomic regions from SNP 147914 to 148514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,740 DEBUG Processing 438/664 atomic regions from SNP 131258 to 131858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,789 DEBUG Processing 288/640 atomic regions from SNP 86159 to 86759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:25,799 DEBUG Processing 80/544 atomic regions from SNP 23707 to 24307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:25,801 DEBUG Processing 115/582 atomic regions from SNP 34304 to 34904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:25,962 DEBUG Processing 439/664 atomic regions from SNP 131558 to 132158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:25,993 DEBUG Processing 495/705 atomic regions from SNP 148214 to 148814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,005 DEBUG Processing 81/544 atomic regions from SNP 24007 to 24607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:26,006 DEBUG Processing 116/582 atomic regions from SNP 34604 to 35204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:26,019 DEBUG Processing 289/640 atomic regions from SNP 86459 to 87059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,185 DEBUG Processing 440/664 atomic regions from SNP 131858 to 132458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,213 DEBUG Processing 117/582 atomic regions from SNP 34904 to 35504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:26,230 DEBUG Processing 82/544 atomic regions from SNP 24307 to 24907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:26,246 DEBUG Processing 290/640 atomic regions from SNP 86759 to 87359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,270 DEBUG Processing 496/705 atomic regions from SNP 148514 to 149114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,417 DEBUG Processing 118/582 atomic regions from SNP 35204 to 35804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:26,439 DEBUG Processing 441/664 atomic regions from SNP 132158 to 132758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,467 DEBUG Processing 83/544 atomic regions from SNP 24607 to 25207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:26,472 DEBUG Processing 291/640 atomic regions from SNP 87059 to 87659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,543 DEBUG Processing 497/705 atomic regions from SNP 148814 to 149414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,615 DEBUG Processing 119/582 atomic regions from SNP 35504 to 36104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:26,686 DEBUG Processing 84/544 atomic regions from SNP 24907 to 25507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:26,692 DEBUG Processing 442/664 atomic regions from SNP 132458 to 133058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,717 DEBUG Processing 292/640 atomic regions from SNP 87359 to 87959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,791 DEBUG Processing 498/705 atomic regions from SNP 149114 to 149714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,805 DEBUG Processing 120/582 atomic regions from SNP 35804 to 36404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:26,914 DEBUG Processing 85/544 atomic regions from SNP 25207 to 25807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:26,917 DEBUG Processing 443/664 atomic regions from SNP 132758 to 133358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:26,947 DEBUG Processing 293/640 atomic regions from SNP 87659 to 88259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:26,997 DEBUG Processing 121/582 atomic regions from SNP 36104 to 36704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:27,045 DEBUG Processing 499/705 atomic regions from SNP 149414 to 150014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,125 DEBUG Processing 86/544 atomic regions from SNP 25507 to 26107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:27,141 DEBUG Processing 444/664 atomic regions from SNP 133058 to 133658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,170 DEBUG Processing 294/640 atomic regions from SNP 87959 to 88559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,199 DEBUG Processing 122/582 atomic regions from SNP 36404 to 37004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:27,290 DEBUG Processing 500/705 atomic regions from SNP 149714 to 150314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,339 DEBUG Processing 87/544 atomic regions from SNP 25807 to 26407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:27,361 DEBUG Processing 445/664 atomic regions from SNP 133358 to 133958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,403 DEBUG Processing 295/640 atomic regions from SNP 88259 to 88859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,410 DEBUG Processing 123/582 atomic regions from SNP 36704 to 37304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:27,532 DEBUG Processing 501/705 atomic regions from SNP 150014 to 150614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,565 DEBUG Processing 88/544 atomic regions from SNP 26107 to 26707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:27,580 DEBUG Processing 446/664 atomic regions from SNP 133658 to 134258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,619 DEBUG Processing 124/582 atomic regions from SNP 37004 to 37604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:27,634 DEBUG Processing 296/640 atomic regions from SNP 88559 to 89159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:27,776 DEBUG Processing 502/705 atomic regions from SNP 150314 to 150914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,785 DEBUG Processing 89/544 atomic regions from SNP 26407 to 27007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:27,801 DEBUG Processing 447/664 atomic regions from SNP 133958 to 134558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:27,824 DEBUG Processing 125/582 atomic regions from SNP 37304 to 37904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:27,863 DEBUG Processing 297/640 atomic regions from SNP 88859 to 89459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,012 DEBUG Processing 90/544 atomic regions from SNP 26707 to 27307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:28,019 DEBUG Processing 503/705 atomic regions from SNP 150614 to 151214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,020 DEBUG Processing 448/664 atomic regions from SNP 134258 to 134858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,025 DEBUG Processing 126/582 atomic regions from SNP 37604 to 38204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:28,091 DEBUG Processing 298/640 atomic regions from SNP 89159 to 89759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,227 DEBUG Processing 127/582 atomic regions from SNP 37904 to 38504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:28,237 DEBUG Processing 91/544 atomic regions from SNP 27007 to 27607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:28,243 DEBUG Processing 449/664 atomic regions from SNP 134558 to 135158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,267 DEBUG Processing 504/705 atomic regions from SNP 150914 to 151514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,316 DEBUG Processing 299/640 atomic regions from SNP 89459 to 90059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,430 DEBUG Processing 128/582 atomic regions from SNP 38204 to 38804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:28,447 DEBUG Processing 92/544 atomic regions from SNP 27307 to 27907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:28,466 DEBUG Processing 450/664 atomic regions from SNP 134858 to 135458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,545 DEBUG Processing 505/705 atomic regions from SNP 151214 to 151814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,557 DEBUG Processing 300/640 atomic regions from SNP 89759 to 90359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,635 DEBUG Processing 129/582 atomic regions from SNP 38504 to 39104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:28,655 DEBUG Processing 93/544 atomic regions from SNP 27607 to 28207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:28,686 DEBUG Processing 451/664 atomic regions from SNP 135158 to 135758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:28,789 DEBUG Processing 301/640 atomic regions from SNP 90059 to 90659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:28,794 DEBUG Processing 506/705 atomic regions from SNP 151514 to 152114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,843 DEBUG Processing 130/582 atomic regions from SNP 38804 to 39404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:28,860 DEBUG Processing 94/544 atomic regions from SNP 27907 to 28507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:28,911 DEBUG Processing 452/664 atomic regions from SNP 135458 to 136058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,016 DEBUG Processing 302/640 atomic regions from SNP 90359 to 90959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,044 DEBUG Processing 507/705 atomic regions from SNP 151814 to 152414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,048 DEBUG Processing 131/582 atomic regions from SNP 39104 to 39704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:29,062 DEBUG Processing 95/544 atomic regions from SNP 28207 to 28807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:29,156 DEBUG Processing 453/664 atomic regions from SNP 135758 to 136358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,246 DEBUG Processing 303/640 atomic regions from SNP 90659 to 91259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,251 DEBUG Processing 132/582 atomic regions from SNP 39404 to 40004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:29,265 DEBUG Processing 96/544 atomic regions from SNP 28507 to 29107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:29,294 DEBUG Processing 508/705 atomic regions from SNP 152114 to 152714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,386 DEBUG Processing 454/664 atomic regions from SNP 136058 to 136658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,453 DEBUG Processing 133/582 atomic regions from SNP 39704 to 40304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:29,464 DEBUG Processing 97/544 atomic regions from SNP 28807 to 29407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:29,477 DEBUG Processing 304/640 atomic regions from SNP 90959 to 91559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,541 DEBUG Processing 509/705 atomic regions from SNP 152414 to 153014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,605 DEBUG Processing 455/664 atomic regions from SNP 136358 to 136958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,652 DEBUG Processing 134/582 atomic regions from SNP 40004 to 40604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:29,658 DEBUG Processing 98/544 atomic regions from SNP 29107 to 29707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:29,702 DEBUG Processing 305/640 atomic regions from SNP 91259 to 91859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:29,784 DEBUG Processing 510/705 atomic regions from SNP 152714 to 153314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,829 DEBUG Processing 456/664 atomic regions from SNP 136658 to 137258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:29,861 DEBUG Processing 99/544 atomic regions from SNP 29407 to 30007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:29,865 DEBUG Processing 135/582 atomic regions from SNP 40304 to 40904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:29,936 DEBUG Processing 306/640 atomic regions from SNP 91559 to 92159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,033 DEBUG Processing 511/705 atomic regions from SNP 153014 to 153614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,056 DEBUG Processing 457/664 atomic regions from SNP 136958 to 137558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,064 DEBUG Processing 100/544 atomic regions from SNP 29707 to 30307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:30,071 DEBUG Processing 136/582 atomic regions from SNP 40604 to 41204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:30,169 DEBUG Processing 307/640 atomic regions from SNP 91859 to 92459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,272 DEBUG Processing 101/544 atomic regions from SNP 30007 to 30607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:30,281 DEBUG Processing 137/582 atomic regions from SNP 40904 to 41504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:30,288 DEBUG Processing 458/664 atomic regions from SNP 137258 to 137858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,289 DEBUG Processing 512/705 atomic regions from SNP 153314 to 153914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,401 DEBUG Processing 308/640 atomic regions from SNP 92159 to 92759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,487 DEBUG Processing 138/582 atomic regions from SNP 41204 to 41804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:30,491 DEBUG Processing 102/544 atomic regions from SNP 30307 to 30907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:30,517 DEBUG Processing 459/664 atomic regions from SNP 137558 to 138158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,543 DEBUG Processing 513/705 atomic regions from SNP 153614 to 154214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,636 DEBUG Processing 309/640 atomic regions from SNP 92459 to 93059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,692 DEBUG Processing 139/582 atomic regions from SNP 41504 to 42104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:30,722 DEBUG Processing 103/544 atomic regions from SNP 30607 to 31207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:30,742 DEBUG Processing 460/664 atomic regions from SNP 137858 to 138458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:30,793 DEBUG Processing 514/705 atomic regions from SNP 153914 to 154514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,869 DEBUG Processing 310/640 atomic regions from SNP 92759 to 93359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:30,897 DEBUG Processing 140/582 atomic regions from SNP 41804 to 42404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:30,938 DEBUG Processing 104/544 atomic regions from SNP 30907 to 31507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:30,971 DEBUG Processing 461/664 atomic regions from SNP 138158 to 138758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,042 DEBUG Processing 515/705 atomic regions from SNP 154214 to 154814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,101 DEBUG Processing 141/582 atomic regions from SNP 42104 to 42704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:31,103 DEBUG Processing 311/640 atomic regions from SNP 93059 to 93659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,142 DEBUG Processing 105/544 atomic regions from SNP 31207 to 31807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:31,196 DEBUG Processing 462/664 atomic regions from SNP 138458 to 139058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,288 DEBUG Processing 516/705 atomic regions from SNP 154514 to 155114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,305 DEBUG Processing 142/582 atomic regions from SNP 42404 to 43004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:31,333 DEBUG Processing 312/640 atomic regions from SNP 93359 to 93959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,344 DEBUG Processing 106/544 atomic regions from SNP 31507 to 32107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:31,420 DEBUG Processing 463/664 atomic regions from SNP 138758 to 139358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,507 DEBUG Processing 143/582 atomic regions from SNP 42704 to 43304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:31,542 DEBUG Processing 517/705 atomic regions from SNP 154814 to 155414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,568 DEBUG Processing 107/544 atomic regions from SNP 31807 to 32407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:31,568 DEBUG Processing 313/640 atomic regions from SNP 93659 to 94259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,638 DEBUG Processing 464/664 atomic regions from SNP 139058 to 139658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,708 DEBUG Processing 144/582 atomic regions from SNP 43004 to 43604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:31,785 DEBUG Processing 108/544 atomic regions from SNP 32107 to 32707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:31,801 DEBUG Processing 518/705 atomic regions from SNP 155114 to 155714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,805 DEBUG Processing 314/640 atomic regions from SNP 93959 to 94559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:31,858 DEBUG Processing 465/664 atomic regions from SNP 139358 to 139958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:31,908 DEBUG Processing 145/582 atomic regions from SNP 43304 to 43904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:31,983 DEBUG Processing 109/544 atomic regions from SNP 32407 to 33007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:32,048 DEBUG Processing 315/640 atomic regions from SNP 94259 to 94859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,059 DEBUG Processing 519/705 atomic regions from SNP 155414 to 156014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,081 DEBUG Processing 466/664 atomic regions from SNP 139658 to 140258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,109 DEBUG Processing 146/582 atomic regions from SNP 43604 to 44204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,178 DEBUG Processing 110/544 atomic regions from SNP 32707 to 33307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:32,290 DEBUG Processing 316/640 atomic regions from SNP 94559 to 95159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,302 DEBUG Processing 467/664 atomic regions from SNP 139958 to 140558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,313 DEBUG Processing 147/582 atomic regions from SNP 43904 to 44504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,323 DEBUG Processing 520/705 atomic regions from SNP 155714 to 156314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,371 DEBUG Processing 111/544 atomic regions from SNP 33007 to 33607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:32,515 DEBUG Processing 148/582 atomic regions from SNP 44204 to 44804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,521 DEBUG Processing 468/664 atomic regions from SNP 140258 to 140858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,529 DEBUG Processing 317/640 atomic regions from SNP 94859 to 95459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,571 DEBUG Processing 112/544 atomic regions from SNP 33307 to 33907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:32,581 DEBUG Processing 521/705 atomic regions from SNP 156014 to 156614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,713 DEBUG Processing 149/582 atomic regions from SNP 44504 to 45104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,739 DEBUG Processing 469/664 atomic regions from SNP 140558 to 141158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,761 DEBUG Processing 318/640 atomic regions from SNP 95159 to 95759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:32,772 DEBUG Processing 113/544 atomic regions from SNP 33607 to 34207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:32,835 DEBUG Processing 522/705 atomic regions from SNP 156314 to 156914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,912 DEBUG Processing 150/582 atomic regions from SNP 44804 to 45404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:32,959 DEBUG Processing 470/664 atomic regions from SNP 140858 to 141458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:32,968 DEBUG Processing 114/544 atomic regions from SNP 33907 to 34507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:32,991 DEBUG Processing 319/640 atomic regions from SNP 95459 to 96059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,090 DEBUG Processing 523/705 atomic regions from SNP 156614 to 157214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,111 DEBUG Processing 151/582 atomic regions from SNP 45104 to 45704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,164 DEBUG Processing 115/544 atomic regions from SNP 34207 to 34807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:33,180 DEBUG Processing 471/664 atomic regions from SNP 141158 to 141758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,219 DEBUG Processing 320/640 atomic regions from SNP 95759 to 96359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,312 DEBUG Processing 152/582 atomic regions from SNP 45404 to 46004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,348 DEBUG Processing 524/705 atomic regions from SNP 156914 to 157514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,359 DEBUG Processing 116/544 atomic regions from SNP 34507 to 35107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:33,397 DEBUG Processing 472/664 atomic regions from SNP 141458 to 142058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,447 DEBUG Processing 321/640 atomic regions from SNP 96059 to 96659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,514 DEBUG Processing 153/582 atomic regions from SNP 45704 to 46304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,557 DEBUG Processing 117/544 atomic regions from SNP 34807 to 35407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:33,600 DEBUG Processing 525/705 atomic regions from SNP 157214 to 157814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,615 DEBUG Processing 473/664 atomic regions from SNP 141758 to 142358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,686 DEBUG Processing 322/640 atomic regions from SNP 96359 to 96959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,714 DEBUG Processing 154/582 atomic regions from SNP 46004 to 46604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,782 DEBUG Processing 118/544 atomic regions from SNP 35107 to 35707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:33,833 DEBUG Processing 474/664 atomic regions from SNP 142058 to 142658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:33,856 DEBUG Processing 526/705 atomic regions from SNP 157514 to 158114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,911 DEBUG Processing 155/582 atomic regions from SNP 46304 to 46904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:33,944 DEBUG Processing 323/640 atomic regions from SNP 96659 to 97259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:33,981 DEBUG Processing 119/544 atomic regions from SNP 35407 to 36007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,055 DEBUG Processing 475/664 atomic regions from SNP 142358 to 142958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,108 DEBUG Processing 527/705 atomic regions from SNP 157814 to 158414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,110 DEBUG Processing 156/582 atomic regions from SNP 46604 to 47204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,171 DEBUG Processing 324/640 atomic regions from SNP 96959 to 97559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,178 DEBUG Processing 120/544 atomic regions from SNP 35707 to 36307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,278 DEBUG Processing 476/664 atomic regions from SNP 142658 to 143258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,314 DEBUG Processing 157/582 atomic regions from SNP 46904 to 47504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,363 DEBUG Processing 528/705 atomic regions from SNP 158114 to 158714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,373 DEBUG Processing 121/544 atomic regions from SNP 36007 to 36607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,402 DEBUG Processing 325/640 atomic regions from SNP 97259 to 97859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,505 DEBUG Processing 477/664 atomic regions from SNP 142958 to 143558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,519 DEBUG Processing 158/582 atomic regions from SNP 47204 to 47804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,574 DEBUG Processing 122/544 atomic regions from SNP 36307 to 36907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,618 DEBUG Processing 529/705 atomic regions from SNP 158414 to 159014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,635 DEBUG Processing 326/640 atomic regions from SNP 97559 to 98159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,721 DEBUG Processing 159/582 atomic regions from SNP 47504 to 48104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,731 DEBUG Processing 478/664 atomic regions from SNP 143258 to 143858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,773 DEBUG Processing 123/544 atomic regions from SNP 36607 to 37207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:34,870 DEBUG Processing 327/640 atomic regions from SNP 97859 to 98459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:34,874 DEBUG Processing 530/705 atomic regions from SNP 158714 to 159314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,925 DEBUG Processing 160/582 atomic regions from SNP 47804 to 48404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:34,954 DEBUG Processing 479/664 atomic regions from SNP 143558 to 144158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:34,970 DEBUG Processing 124/544 atomic regions from SNP 36907 to 37507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,112 DEBUG Processing 328/640 atomic regions from SNP 98159 to 98759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,131 DEBUG Processing 161/582 atomic regions from SNP 48104 to 48704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,134 DEBUG Processing 531/705 atomic regions from SNP 159014 to 159614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,173 DEBUG Processing 125/544 atomic regions from SNP 37207 to 37807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,181 DEBUG Processing 480/664 atomic regions from SNP 143858 to 144458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,334 DEBUG Processing 162/582 atomic regions from SNP 48404 to 49004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,348 DEBUG Processing 329/640 atomic regions from SNP 98459 to 99059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,378 DEBUG Processing 126/544 atomic regions from SNP 37507 to 38107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,392 DEBUG Processing 532/705 atomic regions from SNP 159314 to 159914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,409 DEBUG Processing 481/664 atomic regions from SNP 144158 to 144758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,540 DEBUG Processing 163/582 atomic regions from SNP 48704 to 49304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,582 DEBUG Processing 127/544 atomic regions from SNP 37807 to 38407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,585 DEBUG Processing 330/640 atomic regions from SNP 98759 to 99359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,634 DEBUG Processing 482/664 atomic regions from SNP 144458 to 145058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,649 DEBUG Processing 533/705 atomic regions from SNP 159614 to 160214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,740 DEBUG Processing 164/582 atomic regions from SNP 49004 to 49604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,780 DEBUG Processing 128/544 atomic regions from SNP 38107 to 38707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:35,814 DEBUG Processing 331/640 atomic regions from SNP 99059 to 99659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:35,851 DEBUG Processing 483/664 atomic regions from SNP 144758 to 145358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:35,925 DEBUG Processing 534/705 atomic regions from SNP 159914 to 160514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,943 DEBUG Processing 165/582 atomic regions from SNP 49304 to 49904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:35,980 DEBUG Processing 129/544 atomic regions from SNP 38407 to 39007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,039 DEBUG Processing 332/640 atomic regions from SNP 99359 to 99959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,066 DEBUG Processing 484/664 atomic regions from SNP 145058 to 145658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,149 DEBUG Processing 166/582 atomic regions from SNP 49604 to 50204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,183 DEBUG Processing 130/544 atomic regions from SNP 38707 to 39307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,204 DEBUG Processing 535/705 atomic regions from SNP 160214 to 160814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,271 DEBUG Processing 333/640 atomic regions from SNP 99659 to 100259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,285 DEBUG Processing 485/664 atomic regions from SNP 145358 to 145958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,351 DEBUG Processing 167/582 atomic regions from SNP 49904 to 50504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,382 DEBUG Processing 131/544 atomic regions from SNP 39007 to 39607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,459 DEBUG Processing 536/705 atomic regions from SNP 160514 to 161114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,501 DEBUG Processing 486/664 atomic regions from SNP 145658 to 146258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,503 DEBUG Processing 334/640 atomic regions from SNP 99959 to 100559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,551 DEBUG Processing 168/582 atomic regions from SNP 50204 to 50804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,580 DEBUG Processing 132/544 atomic regions from SNP 39307 to 39907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,711 DEBUG Processing 537/705 atomic regions from SNP 160814 to 161414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,720 DEBUG Processing 487/664 atomic regions from SNP 145958 to 146558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,736 DEBUG Processing 335/640 atomic regions from SNP 100259 to 100859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,759 DEBUG Processing 169/582 atomic regions from SNP 50504 to 51104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,786 DEBUG Processing 133/544 atomic regions from SNP 39607 to 40207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:36,948 DEBUG Processing 488/664 atomic regions from SNP 146258 to 146858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:36,964 DEBUG Processing 170/582 atomic regions from SNP 50804 to 51404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:36,966 DEBUG Processing 538/705 atomic regions from SNP 161114 to 161714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,968 DEBUG Processing 336/640 atomic regions from SNP 100559 to 101159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:36,989 DEBUG Processing 134/544 atomic regions from SNP 39907 to 40507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,168 DEBUG Processing 171/582 atomic regions from SNP 51104 to 51704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,176 DEBUG Processing 489/664 atomic regions from SNP 146558 to 147158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,198 DEBUG Processing 135/544 atomic regions from SNP 40207 to 40807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,201 DEBUG Processing 337/640 atomic regions from SNP 100859 to 101459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,241 DEBUG Processing 539/705 atomic regions from SNP 161414 to 162014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,374 DEBUG Processing 172/582 atomic regions from SNP 51404 to 52004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,405 DEBUG Processing 490/664 atomic regions from SNP 146858 to 147458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,406 DEBUG Processing 136/544 atomic regions from SNP 40507 to 41107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,436 DEBUG Processing 338/640 atomic regions from SNP 101159 to 101759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,511 DEBUG Processing 540/705 atomic regions from SNP 161714 to 162314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,581 DEBUG Processing 173/582 atomic regions from SNP 51704 to 52304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,614 DEBUG Processing 137/544 atomic regions from SNP 40807 to 41407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,637 DEBUG Processing 491/664 atomic regions from SNP 147158 to 147758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,667 DEBUG Processing 339/640 atomic regions from SNP 101459 to 102059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,777 DEBUG Processing 541/705 atomic regions from SNP 162014 to 162614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,791 DEBUG Processing 174/582 atomic regions from SNP 52004 to 52604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:37,824 DEBUG Processing 138/544 atomic regions from SNP 41107 to 41707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:37,890 DEBUG Processing 492/664 atomic regions from SNP 147458 to 148058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:37,900 DEBUG Processing 340/640 atomic regions from SNP 101759 to 102359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:37,992 DEBUG Processing 175/582 atomic regions from SNP 52304 to 52904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,030 DEBUG Processing 139/544 atomic regions from SNP 41407 to 42007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,043 DEBUG Processing 542/705 atomic regions from SNP 162314 to 162914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,135 DEBUG Processing 341/640 atomic regions from SNP 102059 to 102659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,145 DEBUG Processing 493/664 atomic regions from SNP 147758 to 148358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,198 DEBUG Processing 176/582 atomic regions from SNP 52604 to 53204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,234 DEBUG Processing 140/544 atomic regions from SNP 41707 to 42307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,302 DEBUG Processing 543/705 atomic regions from SNP 162614 to 163214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,370 DEBUG Processing 342/640 atomic regions from SNP 102359 to 102959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,377 DEBUG Processing 494/664 atomic regions from SNP 148058 to 148658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,410 DEBUG Processing 177/582 atomic regions from SNP 52904 to 53504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,440 DEBUG Processing 141/544 atomic regions from SNP 42007 to 42607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,587 DEBUG Processing 544/705 atomic regions from SNP 162914 to 163514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,623 DEBUG Processing 343/640 atomic regions from SNP 102659 to 103259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,624 DEBUG Processing 495/664 atomic regions from SNP 148358 to 148958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:38,626 DEBUG Processing 178/582 atomic regions from SNP 53204 to 53804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,649 DEBUG Processing 142/544 atomic regions from SNP 42307 to 42907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,842 DEBUG Processing 179/582 atomic regions from SNP 53504 to 54104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:38,849 DEBUG Processing 545/705 atomic regions from SNP 163214 to 163814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,862 DEBUG Processing 143/544 atomic regions from SNP 42607 to 43207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:38,866 DEBUG Processing 344/640 atomic regions from SNP 102959 to 103559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:38,871 DEBUG Processing 496/664 atomic regions from SNP 148658 to 149258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,053 DEBUG Processing 180/582 atomic regions from SNP 53804 to 54404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,074 DEBUG Processing 144/544 atomic regions from SNP 42907 to 43507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,107 DEBUG Processing 497/664 atomic regions from SNP 148958 to 149558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,118 DEBUG Processing 546/705 atomic regions from SNP 163514 to 164114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,131 DEBUG Processing 345/640 atomic regions from SNP 103259 to 103859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,261 DEBUG Processing 181/582 atomic regions from SNP 54104 to 54704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,281 DEBUG Processing 145/544 atomic regions from SNP 43207 to 43807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,342 DEBUG Processing 498/664 atomic regions from SNP 149258 to 149858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,378 DEBUG Processing 547/705 atomic regions from SNP 163814 to 164414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,386 DEBUG Processing 346/640 atomic regions from SNP 103559 to 104159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,468 DEBUG Processing 182/582 atomic regions from SNP 54404 to 55004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,490 DEBUG Processing 146/544 atomic regions from SNP 43507 to 44107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,579 DEBUG Processing 499/664 atomic regions from SNP 149558 to 150158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,629 DEBUG Processing 347/640 atomic regions from SNP 103859 to 104459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,634 DEBUG Processing 548/705 atomic regions from SNP 164114 to 164714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,680 DEBUG Processing 183/582 atomic regions from SNP 54704 to 55304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,702 DEBUG Processing 147/544 atomic regions from SNP 43807 to 44407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:39,810 DEBUG Processing 500/664 atomic regions from SNP 149858 to 150458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:39,880 DEBUG Processing 348/640 atomic regions from SNP 104159 to 104759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:39,894 DEBUG Processing 549/705 atomic regions from SNP 164414 to 165014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,897 DEBUG Processing 184/582 atomic regions from SNP 55004 to 55604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:39,918 DEBUG Processing 148/544 atomic regions from SNP 44107 to 44707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,038 DEBUG Processing 501/664 atomic regions from SNP 150158 to 150758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,114 DEBUG Processing 185/582 atomic regions from SNP 55304 to 55904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,132 DEBUG Processing 349/640 atomic regions from SNP 104459 to 105059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,132 DEBUG Processing 149/544 atomic regions from SNP 44407 to 45007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,151 DEBUG Processing 550/705 atomic regions from SNP 164714 to 165314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,285 DEBUG Processing 502/664 atomic regions from SNP 150458 to 151058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,321 DEBUG Processing 186/582 atomic regions from SNP 55604 to 56204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,339 DEBUG Processing 150/544 atomic regions from SNP 44707 to 45307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,369 DEBUG Processing 350/640 atomic regions from SNP 104759 to 105359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,421 DEBUG Processing 551/705 atomic regions from SNP 165014 to 165614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,527 DEBUG Processing 187/582 atomic regions from SNP 55904 to 56504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,544 DEBUG Processing 151/544 atomic regions from SNP 45007 to 45607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,546 DEBUG Processing 503/664 atomic regions from SNP 150758 to 151358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,606 DEBUG Processing 351/640 atomic regions from SNP 105059 to 105659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,699 DEBUG Processing 552/705 atomic regions from SNP 165314 to 165914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,736 DEBUG Processing 188/582 atomic regions from SNP 56204 to 56804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,750 DEBUG Processing 152/544 atomic regions from SNP 45307 to 45907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,788 DEBUG Processing 504/664 atomic regions from SNP 151058 to 151658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:40,834 DEBUG Processing 352/640 atomic regions from SNP 105359 to 105959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:40,945 DEBUG Processing 189/582 atomic regions from SNP 56504 to 57104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:40,960 DEBUG Processing 153/544 atomic regions from SNP 45607 to 46207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:40,985 DEBUG Processing 553/705 atomic regions from SNP 165614 to 166214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,017 DEBUG Processing 505/664 atomic regions from SNP 151358 to 151958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,062 DEBUG Processing 353/640 atomic regions from SNP 105659 to 106259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,166 DEBUG Processing 190/582 atomic regions from SNP 56804 to 57404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,171 DEBUG Processing 154/544 atomic regions from SNP 45907 to 46507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,251 DEBUG Processing 506/664 atomic regions from SNP 151658 to 152258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,268 DEBUG Processing 554/705 atomic regions from SNP 165914 to 166514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,292 DEBUG Processing 354/640 atomic regions from SNP 105959 to 106559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,377 DEBUG Processing 155/544 atomic regions from SNP 46207 to 46807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,382 DEBUG Processing 191/582 atomic regions from SNP 57104 to 57704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,494 DEBUG Processing 507/664 atomic regions from SNP 151958 to 152558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,524 DEBUG Processing 355/640 atomic regions from SNP 106259 to 106859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,552 DEBUG Processing 555/705 atomic regions from SNP 166214 to 166814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,579 DEBUG Processing 156/544 atomic regions from SNP 46507 to 47107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,608 DEBUG Processing 192/582 atomic regions from SNP 57404 to 58004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,733 DEBUG Processing 508/664 atomic regions from SNP 152258 to 152858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,782 DEBUG Processing 356/640 atomic regions from SNP 106559 to 107159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:41,786 DEBUG Processing 157/544 atomic regions from SNP 46807 to 47407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:41,833 DEBUG Processing 556/705 atomic regions from SNP 166514 to 167114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,846 DEBUG Processing 193/582 atomic regions from SNP 57704 to 58304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:41,960 DEBUG Processing 509/664 atomic regions from SNP 152558 to 153158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:41,992 DEBUG Processing 158/544 atomic regions from SNP 47107 to 47707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,033 DEBUG Processing 357/640 atomic regions from SNP 106859 to 107459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,070 DEBUG Processing 194/582 atomic regions from SNP 58004 to 58604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,117 DEBUG Processing 557/705 atomic regions from SNP 166814 to 167414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,184 DEBUG Processing 510/664 atomic regions from SNP 152858 to 153458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,196 DEBUG Processing 159/544 atomic regions from SNP 47407 to 48007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,262 DEBUG Processing 358/640 atomic regions from SNP 107159 to 107759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,278 DEBUG Processing 195/582 atomic regions from SNP 58304 to 58904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,393 DEBUG Processing 558/705 atomic regions from SNP 167114 to 167714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,401 DEBUG Processing 160/544 atomic regions from SNP 47707 to 48307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,411 DEBUG Processing 511/664 atomic regions from SNP 153158 to 153758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,486 DEBUG Processing 196/582 atomic regions from SNP 58604 to 59204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,497 DEBUG Processing 359/640 atomic regions from SNP 107459 to 108059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,603 DEBUG Processing 161/544 atomic regions from SNP 48007 to 48607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,640 DEBUG Processing 512/664 atomic regions from SNP 153458 to 154058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,666 DEBUG Processing 559/705 atomic regions from SNP 167414 to 168014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,692 DEBUG Processing 197/582 atomic regions from SNP 58904 to 59504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,726 DEBUG Processing 360/640 atomic regions from SNP 107759 to 108359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,799 DEBUG Processing 162/544 atomic regions from SNP 48307 to 48907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:42,859 DEBUG Processing 513/664 atomic regions from SNP 153758 to 154358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:42,895 DEBUG Processing 198/582 atomic regions from SNP 59204 to 59804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:42,925 DEBUG Processing 560/705 atomic regions from SNP 167714 to 168314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,958 DEBUG Processing 361/640 atomic regions from SNP 108059 to 108659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:42,997 DEBUG Processing 163/544 atomic regions from SNP 48607 to 49207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,080 DEBUG Processing 514/664 atomic regions from SNP 154058 to 154658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,092 DEBUG Processing 199/582 atomic regions from SNP 59504 to 60104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,187 DEBUG Processing 561/705 atomic regions from SNP 168014 to 168614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,198 DEBUG Processing 164/544 atomic regions from SNP 48907 to 49507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,204 DEBUG Processing 362/640 atomic regions from SNP 108359 to 108959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,292 DEBUG Processing 200/582 atomic regions from SNP 59804 to 60404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,300 DEBUG Processing 515/664 atomic regions from SNP 154358 to 154958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,410 DEBUG Processing 165/544 atomic regions from SNP 49207 to 49807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,455 DEBUG Processing 363/640 atomic regions from SNP 108659 to 109259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,468 DEBUG Processing 562/705 atomic regions from SNP 168314 to 168914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,495 DEBUG Processing 201/582 atomic regions from SNP 60104 to 60704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,525 DEBUG Processing 516/664 atomic regions from SNP 154658 to 155258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,613 DEBUG Processing 166/544 atomic regions from SNP 49507 to 50107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,683 DEBUG Processing 364/640 atomic regions from SNP 108959 to 109559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,712 DEBUG Processing 202/582 atomic regions from SNP 60404 to 61004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,749 DEBUG Processing 517/664 atomic regions from SNP 154958 to 155558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:43,752 DEBUG Processing 563/705 atomic regions from SNP 168614 to 169214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,812 DEBUG Processing 167/544 atomic regions from SNP 49807 to 50407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:43,908 DEBUG Processing 365/640 atomic regions from SNP 109259 to 109859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:43,938 DEBUG Processing 203/582 atomic regions from SNP 60704 to 61304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:43,973 DEBUG Processing 518/664 atomic regions from SNP 155258 to 155858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,007 DEBUG Processing 168/544 atomic regions from SNP 50107 to 50707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,044 DEBUG Processing 564/705 atomic regions from SNP 168914 to 169514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,133 DEBUG Processing 366/640 atomic regions from SNP 109559 to 110159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,164 DEBUG Processing 204/582 atomic regions from SNP 61004 to 61604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,195 DEBUG Processing 519/664 atomic regions from SNP 155558 to 156158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,204 DEBUG Processing 169/544 atomic regions from SNP 50407 to 51007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,310 DEBUG Processing 565/705 atomic regions from SNP 169214 to 169814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,365 DEBUG Processing 367/640 atomic regions from SNP 109859 to 110459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,380 DEBUG Processing 205/582 atomic regions from SNP 61304 to 61904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,404 DEBUG Processing 170/544 atomic regions from SNP 50707 to 51307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,423 DEBUG Processing 520/664 atomic regions from SNP 155858 to 156458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,557 DEBUG Processing 566/705 atomic regions from SNP 169514 to 170114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,584 DEBUG Processing 206/582 atomic regions from SNP 61604 to 62204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,588 DEBUG Processing 368/640 atomic regions from SNP 110159 to 110759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,611 DEBUG Processing 171/544 atomic regions from SNP 51007 to 51607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,667 DEBUG Processing 521/664 atomic regions from SNP 156158 to 156758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,793 DEBUG Processing 207/582 atomic regions from SNP 61904 to 62504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:44,804 DEBUG Processing 567/705 atomic regions from SNP 169814 to 170414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,817 DEBUG Processing 369/640 atomic regions from SNP 110459 to 111059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:44,819 DEBUG Processing 172/544 atomic regions from SNP 51307 to 51907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:44,894 DEBUG Processing 522/664 atomic regions from SNP 156458 to 157058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:44,999 DEBUG Processing 208/582 atomic regions from SNP 62204 to 62804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,045 DEBUG Processing 370/640 atomic regions from SNP 110759 to 111359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,053 DEBUG Processing 568/705 atomic regions from SNP 170114 to 170714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,056 DEBUG Processing 173/544 atomic regions from SNP 51607 to 52207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,113 DEBUG Processing 523/664 atomic regions from SNP 156758 to 157358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,207 DEBUG Processing 209/582 atomic regions from SNP 62504 to 63104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,278 DEBUG Processing 371/640 atomic regions from SNP 111059 to 111659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,294 DEBUG Processing 174/544 atomic regions from SNP 51907 to 52507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,300 DEBUG Processing 569/705 atomic regions from SNP 170414 to 171014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,334 DEBUG Processing 524/664 atomic regions from SNP 157058 to 157658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,408 DEBUG Processing 210/582 atomic regions from SNP 62804 to 63404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,508 DEBUG Processing 372/640 atomic regions from SNP 111359 to 111959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,524 DEBUG Processing 175/544 atomic regions from SNP 52207 to 52807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,546 DEBUG Processing 570/705 atomic regions from SNP 170714 to 171314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,556 DEBUG Processing 525/664 atomic regions from SNP 157358 to 157958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,607 DEBUG Processing 211/582 atomic regions from SNP 63104 to 63704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,739 DEBUG Processing 373/640 atomic regions from SNP 111659 to 112259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:45,746 DEBUG Processing 176/544 atomic regions from SNP 52507 to 53107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,789 DEBUG Processing 526/664 atomic regions from SNP 157658 to 158258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:45,799 DEBUG Processing 571/705 atomic regions from SNP 171014 to 171614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,815 DEBUG Processing 212/582 atomic regions from SNP 63404 to 64004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:45,981 DEBUG Processing 177/544 atomic regions from SNP 52807 to 53407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:45,991 DEBUG Processing 374/640 atomic regions from SNP 111959 to 112559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,019 DEBUG Processing 527/664 atomic regions from SNP 157958 to 158558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,026 DEBUG Processing 213/582 atomic regions from SNP 63704 to 64304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,056 DEBUG Processing 572/705 atomic regions from SNP 171314 to 171914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,185 DEBUG Processing 178/544 atomic regions from SNP 53107 to 53707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,243 DEBUG Processing 214/582 atomic regions from SNP 64004 to 64604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,247 DEBUG Processing 375/640 atomic regions from SNP 112259 to 112859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,251 DEBUG Processing 528/664 atomic regions from SNP 158258 to 158858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,323 DEBUG Processing 573/705 atomic regions from SNP 171614 to 172214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,390 DEBUG Processing 179/544 atomic regions from SNP 53407 to 54007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,456 DEBUG Processing 215/582 atomic regions from SNP 64304 to 64904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,486 DEBUG Processing 376/640 atomic regions from SNP 112559 to 113159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,504 DEBUG Processing 529/664 atomic regions from SNP 158558 to 159158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,584 DEBUG Processing 574/705 atomic regions from SNP 171914 to 172514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,588 DEBUG Processing 180/544 atomic regions from SNP 53707 to 54307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,660 DEBUG Processing 216/582 atomic regions from SNP 64604 to 65204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,716 DEBUG Processing 377/640 atomic regions from SNP 112859 to 113459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,764 DEBUG Processing 530/664 atomic regions from SNP 158858 to 159458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:46,781 DEBUG Processing 181/544 atomic regions from SNP 54007 to 54607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:46,838 DEBUG Processing 575/705 atomic regions from SNP 172214 to 172814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,862 DEBUG Processing 217/582 atomic regions from SNP 64904 to 65504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:46,943 DEBUG Processing 378/640 atomic regions from SNP 113159 to 113759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:46,982 DEBUG Processing 182/544 atomic regions from SNP 54307 to 54907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,017 DEBUG Processing 531/664 atomic regions from SNP 159158 to 159758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,065 DEBUG Processing 218/582 atomic regions from SNP 65204 to 65804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,087 DEBUG Processing 576/705 atomic regions from SNP 172514 to 173114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,167 DEBUG Processing 379/640 atomic regions from SNP 113459 to 114059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,183 DEBUG Processing 183/544 atomic regions from SNP 54607 to 55207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,245 DEBUG Processing 532/664 atomic regions from SNP 159458 to 160058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,272 DEBUG Processing 219/582 atomic regions from SNP 65504 to 66104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,354 DEBUG Processing 577/705 atomic regions from SNP 172814 to 173414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,385 DEBUG Processing 184/544 atomic regions from SNP 54907 to 55507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,391 DEBUG Processing 380/640 atomic regions from SNP 113759 to 114359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,477 DEBUG Processing 533/664 atomic regions from SNP 159758 to 160358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,480 DEBUG Processing 220/582 atomic regions from SNP 65804 to 66404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,591 DEBUG Processing 185/544 atomic regions from SNP 55207 to 55807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,626 DEBUG Processing 381/640 atomic regions from SNP 114059 to 114659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,640 DEBUG Processing 578/705 atomic regions from SNP 173114 to 173714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,693 DEBUG Processing 221/582 atomic regions from SNP 66104 to 66704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,712 DEBUG Processing 534/664 atomic regions from SNP 160058 to 160658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,790 DEBUG Processing 186/544 atomic regions from SNP 55507 to 56107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:47,863 DEBUG Processing 382/640 atomic regions from SNP 114359 to 114959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:47,904 DEBUG Processing 222/582 atomic regions from SNP 66404 to 67004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:47,927 DEBUG Processing 579/705 atomic regions from SNP 173414 to 174014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,942 DEBUG Processing 535/664 atomic regions from SNP 160358 to 160958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:47,989 DEBUG Processing 187/544 atomic regions from SNP 55807 to 56407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,098 DEBUG Processing 383/640 atomic regions from SNP 114659 to 115259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,116 DEBUG Processing 223/582 atomic regions from SNP 66704 to 67304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,193 DEBUG Processing 536/664 atomic regions from SNP 160658 to 161258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,193 DEBUG Processing 188/544 atomic regions from SNP 56107 to 56707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,207 DEBUG Processing 580/705 atomic regions from SNP 173714 to 174314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,322 DEBUG Processing 224/582 atomic regions from SNP 67004 to 67604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,338 DEBUG Processing 384/640 atomic regions from SNP 114959 to 115559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,403 DEBUG Processing 189/544 atomic regions from SNP 56407 to 57007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,454 DEBUG Processing 537/664 atomic regions from SNP 160958 to 161558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,485 DEBUG Processing 581/705 atomic regions from SNP 174014 to 174614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,522 DEBUG Processing 225/582 atomic regions from SNP 67304 to 67904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,595 DEBUG Processing 385/640 atomic regions from SNP 115259 to 115859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,614 DEBUG Processing 190/544 atomic regions from SNP 56707 to 57307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,703 DEBUG Processing 538/664 atomic regions from SNP 161258 to 161858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:48,729 DEBUG Processing 226/582 atomic regions from SNP 67604 to 68204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,734 DEBUG Processing 582/705 atomic regions from SNP 174314 to 174914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,822 DEBUG Processing 191/544 atomic regions from SNP 57007 to 57607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:48,825 DEBUG Processing 386/640 atomic regions from SNP 115559 to 116159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:48,934 DEBUG Processing 227/582 atomic regions from SNP 67904 to 68504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:48,935 DEBUG Processing 539/664 atomic regions from SNP 161558 to 162158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,004 DEBUG Processing 583/705 atomic regions from SNP 174614 to 175214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,022 DEBUG Processing 192/544 atomic regions from SNP 57307 to 57907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,051 DEBUG Processing 387/640 atomic regions from SNP 115859 to 116459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,148 DEBUG Processing 228/582 atomic regions from SNP 68204 to 68804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,162 DEBUG Processing 540/664 atomic regions from SNP 161858 to 162458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,234 DEBUG Processing 193/544 atomic regions from SNP 57607 to 58207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,289 DEBUG Processing 584/705 atomic regions from SNP 174914 to 175514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,290 DEBUG Processing 388/640 atomic regions from SNP 116159 to 116759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,351 DEBUG Processing 229/582 atomic regions from SNP 68504 to 69104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,409 DEBUG Processing 541/664 atomic regions from SNP 162158 to 162758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,442 DEBUG Processing 194/544 atomic regions from SNP 57907 to 58507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,545 DEBUG Processing 389/640 atomic regions from SNP 116459 to 117059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,552 DEBUG Processing 230/582 atomic regions from SNP 68804 to 69404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,568 DEBUG Processing 585/705 atomic regions from SNP 175214 to 175814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,662 DEBUG Processing 542/664 atomic regions from SNP 162458 to 163058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,670 DEBUG Processing 195/544 atomic regions from SNP 58207 to 58807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,752 DEBUG Processing 231/582 atomic regions from SNP 69104 to 69704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:49,796 DEBUG Processing 390/640 atomic regions from SNP 116759 to 117359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:49,844 DEBUG Processing 586/705 atomic regions from SNP 175514 to 176114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,898 DEBUG Processing 196/544 atomic regions from SNP 58507 to 59107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:49,909 DEBUG Processing 543/664 atomic regions from SNP 162758 to 163358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:49,957 DEBUG Processing 232/582 atomic regions from SNP 69404 to 70004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,063 DEBUG Processing 391/640 atomic regions from SNP 117059 to 117659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,105 DEBUG Processing 587/705 atomic regions from SNP 175814 to 176414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,108 DEBUG Processing 197/544 atomic regions from SNP 58807 to 59407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,162 DEBUG Processing 544/664 atomic regions from SNP 163058 to 163658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,167 DEBUG Processing 233/582 atomic regions from SNP 69704 to 70304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,327 DEBUG Processing 198/544 atomic regions from SNP 59107 to 59707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,331 DEBUG Processing 392/640 atomic regions from SNP 117359 to 117959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,375 DEBUG Processing 588/705 atomic regions from SNP 176114 to 176714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,385 DEBUG Processing 234/582 atomic regions from SNP 70004 to 70604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,409 DEBUG Processing 545/664 atomic regions from SNP 163358 to 163958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,539 DEBUG Processing 199/544 atomic regions from SNP 59407 to 60007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,582 DEBUG Processing 393/640 atomic regions from SNP 117659 to 118259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,598 DEBUG Processing 235/582 atomic regions from SNP 70304 to 70904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,640 DEBUG Processing 546/664 atomic regions from SNP 163658 to 164258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,642 DEBUG Processing 589/705 atomic regions from SNP 176414 to 177014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,746 DEBUG Processing 200/544 atomic regions from SNP 59707 to 60307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:50,803 DEBUG Processing 236/582 atomic regions from SNP 70604 to 71204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:50,820 DEBUG Processing 394/640 atomic regions from SNP 117959 to 118559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:50,868 DEBUG Processing 547/664 atomic regions from SNP 163958 to 164558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:50,923 DEBUG Processing 590/705 atomic regions from SNP 176714 to 177314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,950 DEBUG Processing 201/544 atomic regions from SNP 60007 to 60607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,007 DEBUG Processing 237/582 atomic regions from SNP 70904 to 71504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,050 DEBUG Processing 395/640 atomic regions from SNP 118259 to 118859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,092 DEBUG Processing 548/664 atomic regions from SNP 164258 to 164858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,150 DEBUG Processing 202/544 atomic regions from SNP 60307 to 60907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,190 DEBUG Processing 591/705 atomic regions from SNP 177014 to 177614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,210 DEBUG Processing 238/582 atomic regions from SNP 71204 to 71804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,267 DEBUG Processing 396/640 atomic regions from SNP 118559 to 119159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,319 DEBUG Processing 549/664 atomic regions from SNP 164558 to 165158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,351 DEBUG Processing 203/544 atomic regions from SNP 60607 to 61207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,409 DEBUG Processing 239/582 atomic regions from SNP 71504 to 72104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,447 DEBUG Processing 592/705 atomic regions from SNP 177314 to 177914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,490 DEBUG Processing 397/640 atomic regions from SNP 118859 to 119459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,549 DEBUG Processing 550/664 atomic regions from SNP 164858 to 165458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,554 DEBUG Processing 204/544 atomic regions from SNP 60907 to 61507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,610 DEBUG Processing 240/582 atomic regions from SNP 71804 to 72404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,698 DEBUG Processing 593/705 atomic regions from SNP 177614 to 178214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,718 DEBUG Processing 398/640 atomic regions from SNP 119159 to 119759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,772 DEBUG Processing 205/544 atomic regions from SNP 61207 to 61807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:51,777 DEBUG Processing 551/664 atomic regions from SNP 165158 to 165758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:51,808 DEBUG Processing 241/582 atomic regions from SNP 72104 to 72704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:51,948 DEBUG Processing 399/640 atomic regions from SNP 119459 to 120059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:51,950 DEBUG Processing 594/705 atomic regions from SNP 177914 to 178514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,993 DEBUG Processing 206/544 atomic regions from SNP 61507 to 62107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,010 DEBUG Processing 242/582 atomic regions from SNP 72404 to 73004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,028 DEBUG Processing 552/664 atomic regions from SNP 165458 to 166058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,196 DEBUG Processing 400/640 atomic regions from SNP 119759 to 120359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,224 DEBUG Processing 595/705 atomic regions from SNP 178214 to 178814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,225 DEBUG Processing 207/544 atomic regions from SNP 61807 to 62407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,235 DEBUG Processing 243/582 atomic regions from SNP 72704 to 73304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,308 DEBUG Processing 553/664 atomic regions from SNP 165758 to 166358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,426 DEBUG Processing 401/640 atomic regions from SNP 120059 to 120659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,435 DEBUG Processing 244/582 atomic regions from SNP 73004 to 73604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,446 DEBUG Processing 208/544 atomic regions from SNP 62107 to 62707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,472 DEBUG Processing 596/705 atomic regions from SNP 178514 to 179114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,525 DEBUG Processing 554/664 atomic regions from SNP 166058 to 166658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,630 DEBUG Processing 245/582 atomic regions from SNP 73304 to 73904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,638 DEBUG Processing 209/544 atomic regions from SNP 62407 to 63007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,656 DEBUG Processing 402/640 atomic regions from SNP 120359 to 120959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,717 DEBUG Processing 597/705 atomic regions from SNP 178814 to 179414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,744 DEBUG Processing 555/664 atomic regions from SNP 166358 to 166958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:52,831 DEBUG Processing 246/582 atomic regions from SNP 73604 to 74204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:52,846 DEBUG Processing 210/544 atomic regions from SNP 62707 to 63307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:52,902 DEBUG Processing 403/640 atomic regions from SNP 120659 to 121259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:52,967 DEBUG Processing 598/705 atomic regions from SNP 179114 to 179714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,970 DEBUG Processing 556/664 atomic regions from SNP 166658 to 167258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,032 DEBUG Processing 247/582 atomic regions from SNP 73904 to 74504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,067 DEBUG Processing 211/544 atomic regions from SNP 63007 to 63607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,160 DEBUG Processing 404/640 atomic regions from SNP 120959 to 121559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,201 DEBUG Processing 557/664 atomic regions from SNP 166958 to 167558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,223 DEBUG Processing 599/705 atomic regions from SNP 179414 to 180014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,246 DEBUG Processing 248/582 atomic regions from SNP 74204 to 74804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,304 DEBUG Processing 212/544 atomic regions from SNP 63307 to 63907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,390 DEBUG Processing 405/640 atomic regions from SNP 121259 to 121859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,438 DEBUG Processing 558/664 atomic regions from SNP 167258 to 167858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,454 DEBUG Processing 249/582 atomic regions from SNP 74504 to 75104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,474 DEBUG Processing 600/705 atomic regions from SNP 179714 to 180314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,518 DEBUG Processing 213/544 atomic regions from SNP 63607 to 64207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,621 DEBUG Processing 406/640 atomic regions from SNP 121559 to 122159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,656 DEBUG Processing 250/582 atomic regions from SNP 74804 to 75404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,680 DEBUG Processing 559/664 atomic regions from SNP 167558 to 168158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,720 DEBUG Processing 214/544 atomic regions from SNP 63907 to 64507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,734 DEBUG Processing 601/705 atomic regions from SNP 180014 to 180614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,849 DEBUG Processing 407/640 atomic regions from SNP 121859 to 122459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:53,872 DEBUG Processing 251/582 atomic regions from SNP 75104 to 75704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:53,913 DEBUG Processing 560/664 atomic regions from SNP 167858 to 168458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:53,921 DEBUG Processing 215/544 atomic regions from SNP 64207 to 64807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:53,981 DEBUG Processing 602/705 atomic regions from SNP 180314 to 180914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,070 DEBUG Processing 408/640 atomic regions from SNP 122159 to 122759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,074 DEBUG Processing 252/582 atomic regions from SNP 75404 to 76004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,121 DEBUG Processing 216/544 atomic regions from SNP 64507 to 65107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,137 DEBUG Processing 561/664 atomic regions from SNP 168158 to 168758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,261 DEBUG Processing 603/705 atomic regions from SNP 180614 to 181214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,278 DEBUG Processing 253/582 atomic regions from SNP 75704 to 76304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,296 DEBUG Processing 409/640 atomic regions from SNP 122459 to 123059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,320 DEBUG Processing 217/544 atomic regions from SNP 64807 to 65407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,356 DEBUG Processing 562/664 atomic regions from SNP 168458 to 169058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,481 DEBUG Processing 254/582 atomic regions from SNP 76004 to 76604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,519 DEBUG Processing 604/705 atomic regions from SNP 180914 to 181514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,524 DEBUG Processing 218/544 atomic regions from SNP 65107 to 65707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,532 DEBUG Processing 410/640 atomic regions from SNP 122759 to 123359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,577 DEBUG Processing 563/664 atomic regions from SNP 168758 to 169358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,692 DEBUG Processing 255/582 atomic regions from SNP 76304 to 76904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,736 DEBUG Processing 219/544 atomic regions from SNP 65407 to 66007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:54,781 DEBUG Processing 605/705 atomic regions from SNP 181214 to 181814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,789 DEBUG Processing 411/640 atomic regions from SNP 123059 to 123659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:54,810 DEBUG Processing 564/664 atomic regions from SNP 169058 to 169658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:54,894 DEBUG Processing 256/582 atomic regions from SNP 76604 to 77204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:54,936 DEBUG Processing 220/544 atomic regions from SNP 65707 to 66307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,025 DEBUG Processing 565/664 atomic regions from SNP 169358 to 169958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,028 DEBUG Processing 606/705 atomic regions from SNP 181514 to 182114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,038 DEBUG Processing 412/640 atomic regions from SNP 123359 to 123959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,096 DEBUG Processing 257/582 atomic regions from SNP 76904 to 77504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,137 DEBUG Processing 221/544 atomic regions from SNP 66007 to 66607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,241 DEBUG Processing 566/664 atomic regions from SNP 169658 to 170258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,276 DEBUG Processing 607/705 atomic regions from SNP 181814 to 182414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,280 DEBUG Processing 413/640 atomic regions from SNP 123659 to 124259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,299 DEBUG Processing 258/582 atomic regions from SNP 77204 to 77804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,334 DEBUG Processing 222/544 atomic regions from SNP 66307 to 66907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,463 DEBUG Processing 567/664 atomic regions from SNP 169958 to 170558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,504 DEBUG Processing 259/582 atomic regions from SNP 77504 to 78104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,533 DEBUG Processing 414/640 atomic regions from SNP 123959 to 124559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,536 DEBUG Processing 608/705 atomic regions from SNP 182114 to 182714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,536 DEBUG Processing 223/544 atomic regions from SNP 66607 to 67207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,686 DEBUG Processing 568/664 atomic regions from SNP 170258 to 170858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,710 DEBUG Processing 260/582 atomic regions from SNP 77804 to 78404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,739 DEBUG Processing 224/544 atomic regions from SNP 66907 to 67507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:55,788 DEBUG Processing 415/640 atomic regions from SNP 124259 to 124859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:55,807 DEBUG Processing 609/705 atomic regions from SNP 182414 to 183014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,919 DEBUG Processing 569/664 atomic regions from SNP 170558 to 171158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:55,922 DEBUG Processing 261/582 atomic regions from SNP 78104 to 78704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:55,950 DEBUG Processing 225/544 atomic regions from SNP 67207 to 67807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,051 DEBUG Processing 416/640 atomic regions from SNP 124559 to 125159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,099 DEBUG Processing 610/705 atomic regions from SNP 182714 to 183314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,140 DEBUG Processing 262/582 atomic regions from SNP 78404 to 79004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,159 DEBUG Processing 570/664 atomic regions from SNP 170858 to 171458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,161 DEBUG Processing 226/544 atomic regions from SNP 67507 to 68107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,297 DEBUG Processing 417/640 atomic regions from SNP 124859 to 125459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,357 DEBUG Processing 263/582 atomic regions from SNP 78704 to 79304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,384 DEBUG Processing 611/705 atomic regions from SNP 183014 to 183614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,386 DEBUG Processing 227/544 atomic regions from SNP 67807 to 68407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,417 DEBUG Processing 571/664 atomic regions from SNP 171158 to 171758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,532 DEBUG Processing 418/640 atomic regions from SNP 125159 to 125759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,585 DEBUG Processing 264/582 atomic regions from SNP 79004 to 79604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,601 DEBUG Processing 228/544 atomic regions from SNP 68107 to 68707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,653 DEBUG Processing 612/705 atomic regions from SNP 183314 to 183914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,669 DEBUG Processing 572/664 atomic regions from SNP 171458 to 172058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,757 DEBUG Processing 419/640 atomic regions from SNP 125459 to 126059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,790 DEBUG Processing 265/582 atomic regions from SNP 79304 to 79904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:56,803 DEBUG Processing 229/544 atomic regions from SNP 68407 to 69007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:56,901 DEBUG Processing 573/664 atomic regions from SNP 171758 to 172358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:56,924 DEBUG Processing 613/705 atomic regions from SNP 183614 to 184214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,985 DEBUG Processing 420/640 atomic regions from SNP 125759 to 126359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:56,993 DEBUG Processing 266/582 atomic regions from SNP 79604 to 80204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,004 DEBUG Processing 230/544 atomic regions from SNP 68707 to 69307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,124 DEBUG Processing 574/664 atomic regions from SNP 172058 to 172658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,195 DEBUG Processing 267/582 atomic regions from SNP 79904 to 80504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,198 DEBUG Processing 614/705 atomic regions from SNP 183914 to 184514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,207 DEBUG Processing 231/544 atomic regions from SNP 69007 to 69607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,208 DEBUG Processing 421/640 atomic regions from SNP 126059 to 126659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,352 DEBUG Processing 575/664 atomic regions from SNP 172358 to 172958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,402 DEBUG Processing 268/582 atomic regions from SNP 80204 to 80804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,414 DEBUG Processing 232/544 atomic regions from SNP 69307 to 69907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,434 DEBUG Processing 422/640 atomic regions from SNP 126359 to 126959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,463 DEBUG Processing 615/705 atomic regions from SNP 184214 to 184814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,588 DEBUG Processing 576/664 atomic regions from SNP 172658 to 173258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,617 DEBUG Processing 269/582 atomic regions from SNP 80504 to 81104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,624 DEBUG Processing 233/544 atomic regions from SNP 69607 to 70207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,667 DEBUG Processing 423/640 atomic regions from SNP 126659 to 127259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:57,718 DEBUG Processing 616/705 atomic regions from SNP 184514 to 185114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,831 DEBUG Processing 577/664 atomic regions from SNP 172958 to 173558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:57,837 DEBUG Processing 270/582 atomic regions from SNP 80804 to 81404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:57,841 DEBUG Processing 234/544 atomic regions from SNP 69907 to 70507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:57,920 DEBUG Processing 424/640 atomic regions from SNP 126959 to 127559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,014 DEBUG Processing 617/705 atomic regions from SNP 184814 to 185414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,070 DEBUG Processing 271/582 atomic regions from SNP 81104 to 81704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,071 DEBUG Processing 235/544 atomic regions from SNP 70207 to 70807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,081 DEBUG Processing 578/664 atomic regions from SNP 173258 to 173858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,158 DEBUG Processing 425/640 atomic regions from SNP 127259 to 127859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,278 DEBUG Processing 236/544 atomic regions from SNP 70507 to 71107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,281 DEBUG Processing 272/582 atomic regions from SNP 81404 to 82004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,289 DEBUG Processing 618/705 atomic regions from SNP 185114 to 185714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,311 DEBUG Processing 579/664 atomic regions from SNP 173558 to 174158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,389 DEBUG Processing 426/640 atomic regions from SNP 127559 to 128159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,481 DEBUG Processing 237/544 atomic regions from SNP 70807 to 71407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,486 DEBUG Processing 273/582 atomic regions from SNP 81704 to 82304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,541 DEBUG Processing 580/664 atomic regions from SNP 173858 to 174458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,544 DEBUG Processing 619/705 atomic regions from SNP 185414 to 186014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,615 DEBUG Processing 427/640 atomic regions from SNP 127859 to 128459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,677 DEBUG Processing 238/544 atomic regions from SNP 71107 to 71707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,682 DEBUG Processing 274/582 atomic regions from SNP 82004 to 82604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,760 DEBUG Processing 581/664 atomic regions from SNP 174158 to 174758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:58,790 DEBUG Processing 620/705 atomic regions from SNP 185714 to 186314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,842 DEBUG Processing 428/640 atomic regions from SNP 128159 to 128759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:58,876 DEBUG Processing 239/544 atomic regions from SNP 71407 to 72007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:58,882 DEBUG Processing 275/582 atomic regions from SNP 82304 to 82904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:58,972 DEBUG Processing 582/664 atomic regions from SNP 174458 to 175058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,031 DEBUG Processing 621/705 atomic regions from SNP 186014 to 186614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,065 DEBUG Processing 429/640 atomic regions from SNP 128459 to 129059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,077 DEBUG Processing 240/544 atomic regions from SNP 71707 to 72307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,083 DEBUG Processing 276/582 atomic regions from SNP 82604 to 83204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,181 DEBUG Processing 583/664 atomic regions from SNP 174758 to 175358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,271 DEBUG Processing 622/705 atomic regions from SNP 186314 to 186914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,282 DEBUG Processing 241/544 atomic regions from SNP 72007 to 72607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,290 DEBUG Processing 277/582 atomic regions from SNP 82904 to 83504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,300 DEBUG Processing 430/640 atomic regions from SNP 128759 to 129359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,388 DEBUG Processing 584/664 atomic regions from SNP 175058 to 175658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,486 DEBUG Processing 242/544 atomic regions from SNP 72307 to 72907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,495 DEBUG Processing 278/582 atomic regions from SNP 83204 to 83804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,513 DEBUG Processing 623/705 atomic regions from SNP 186614 to 187214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,534 DEBUG Processing 431/640 atomic regions from SNP 129059 to 129659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,601 DEBUG Processing 585/664 atomic regions from SNP 175358 to 175958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,680 DEBUG Processing 243/544 atomic regions from SNP 72607 to 73207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,694 DEBUG Processing 279/582 atomic regions from SNP 83504 to 84104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:53:59,758 DEBUG Processing 624/705 atomic regions from SNP 186914 to 187514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,788 DEBUG Processing 432/640 atomic regions from SNP 129359 to 129959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:53:59,823 DEBUG Processing 586/664 atomic regions from SNP 175658 to 176258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:53:59,879 DEBUG Processing 244/544 atomic regions from SNP 72907 to 73507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:53:59,899 DEBUG Processing 280/582 atomic regions from SNP 83804 to 84404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,004 DEBUG Processing 625/705 atomic regions from SNP 187214 to 187814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,039 DEBUG Processing 433/640 atomic regions from SNP 129659 to 130259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,048 DEBUG Processing 587/664 atomic regions from SNP 175958 to 176558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,076 DEBUG Processing 245/544 atomic regions from SNP 73207 to 73807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,096 DEBUG Processing 281/582 atomic regions from SNP 84104 to 84704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,265 DEBUG Processing 626/705 atomic regions from SNP 187514 to 188114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,273 DEBUG Processing 434/640 atomic regions from SNP 129959 to 130559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,286 DEBUG Processing 246/544 atomic regions from SNP 73507 to 74107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,292 DEBUG Processing 588/664 atomic regions from SNP 176258 to 176858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,306 DEBUG Processing 282/582 atomic regions from SNP 84404 to 85004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,490 DEBUG Processing 247/544 atomic regions from SNP 73807 to 74407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,509 DEBUG Processing 627/705 atomic regions from SNP 187814 to 188414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,511 DEBUG Processing 283/582 atomic regions from SNP 84704 to 85304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,518 DEBUG Processing 435/640 atomic regions from SNP 130259 to 130859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,533 DEBUG Processing 589/664 atomic regions from SNP 176558 to 177158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,690 DEBUG Processing 248/544 atomic regions from SNP 74107 to 74707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,713 DEBUG Processing 284/582 atomic regions from SNP 85004 to 85604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,759 DEBUG Processing 628/705 atomic regions from SNP 188114 to 188714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,763 DEBUG Processing 590/664 atomic regions from SNP 176858 to 177458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:00,768 DEBUG Processing 436/640 atomic regions from SNP 130559 to 131159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:00,887 DEBUG Processing 249/544 atomic regions from SNP 74407 to 75007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:00,913 DEBUG Processing 285/582 atomic regions from SNP 85304 to 85904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:00,987 DEBUG Processing 591/664 atomic regions from SNP 177158 to 177758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,037 DEBUG Processing 437/640 atomic regions from SNP 130859 to 131459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,040 DEBUG Processing 629/705 atomic regions from SNP 188414 to 189014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,084 DEBUG Processing 250/544 atomic regions from SNP 74707 to 75307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,112 DEBUG Processing 286/582 atomic regions from SNP 85604 to 86204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,208 DEBUG Processing 592/664 atomic regions from SNP 177458 to 178058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,288 DEBUG Processing 251/544 atomic regions from SNP 75007 to 75607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,302 DEBUG Processing 438/640 atomic regions from SNP 131159 to 131759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,318 DEBUG Processing 287/582 atomic regions from SNP 85904 to 86504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,318 DEBUG Processing 630/705 atomic regions from SNP 188714 to 189314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,423 DEBUG Processing 593/664 atomic regions from SNP 177758 to 178358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,494 DEBUG Processing 252/544 atomic regions from SNP 75307 to 75907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,524 DEBUG Processing 288/582 atomic regions from SNP 86204 to 86804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,542 DEBUG Processing 439/640 atomic regions from SNP 131459 to 132059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,567 DEBUG Processing 631/705 atomic regions from SNP 189014 to 189614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,637 DEBUG Processing 594/664 atomic regions from SNP 178058 to 178658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,686 DEBUG Processing 253/544 atomic regions from SNP 75607 to 76207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,724 DEBUG Processing 289/582 atomic regions from SNP 86504 to 87104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:01,788 DEBUG Processing 440/640 atomic regions from SNP 131759 to 132359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:01,814 DEBUG Processing 632/705 atomic regions from SNP 189314 to 189914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,866 DEBUG Processing 595/664 atomic regions from SNP 178358 to 178958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:01,886 DEBUG Processing 254/544 atomic regions from SNP 75907 to 76507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:01,918 DEBUG Processing 290/582 atomic regions from SNP 86804 to 87404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,038 DEBUG Processing 441/640 atomic regions from SNP 132059 to 132659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,062 DEBUG Processing 633/705 atomic regions from SNP 189614 to 190214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,089 DEBUG Processing 255/544 atomic regions from SNP 76207 to 76807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,093 DEBUG Processing 596/664 atomic regions from SNP 178658 to 179258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,119 DEBUG Processing 291/582 atomic regions from SNP 87104 to 87704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,286 DEBUG Processing 442/640 atomic regions from SNP 132359 to 132959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,297 DEBUG Processing 256/544 atomic regions from SNP 76507 to 77107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,309 DEBUG Processing 634/705 atomic regions from SNP 189914 to 190514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,323 DEBUG Processing 292/582 atomic regions from SNP 87404 to 88004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,329 DEBUG Processing 597/664 atomic regions from SNP 178958 to 179558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,501 DEBUG Processing 257/544 atomic regions from SNP 76807 to 77407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,532 DEBUG Processing 293/582 atomic regions from SNP 87704 to 88304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,543 DEBUG Processing 443/640 atomic regions from SNP 132659 to 133259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,559 DEBUG Processing 598/664 atomic regions from SNP 179258 to 179858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,560 DEBUG Processing 635/705 atomic regions from SNP 190214 to 190814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,696 DEBUG Processing 258/544 atomic regions from SNP 77107 to 77707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,738 DEBUG Processing 294/582 atomic regions from SNP 88004 to 88604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:02,788 DEBUG Processing 599/664 atomic regions from SNP 179558 to 180158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:02,789 DEBUG Processing 444/640 atomic regions from SNP 132959 to 133559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:02,807 DEBUG Processing 636/705 atomic regions from SNP 190514 to 191114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,889 DEBUG Processing 259/544 atomic regions from SNP 77407 to 78007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:02,935 DEBUG Processing 295/582 atomic regions from SNP 88304 to 88904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,011 DEBUG Processing 600/664 atomic regions from SNP 179858 to 180458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,013 DEBUG Processing 445/640 atomic regions from SNP 133259 to 133859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,053 DEBUG Processing 637/705 atomic regions from SNP 190814 to 191414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,086 DEBUG Processing 260/544 atomic regions from SNP 77707 to 78307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,123 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:54:03,129 DEBUG Processing 296/582 atomic regions from SNP 88604 to 89204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,238 DEBUG Processing 601/664 atomic regions from SNP 180158 to 180758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,241 DEBUG Processing 446/640 atomic regions from SNP 133559 to 134159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,296 DEBUG Processing 261/544 atomic regions from SNP 78007 to 78607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,300 DEBUG Processing 638/705 atomic regions from SNP 191114 to 191714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,334 DEBUG Processing 297/582 atomic regions from SNP 88904 to 89504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,470 DEBUG Processing 602/664 atomic regions from SNP 180458 to 181058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,470 DEBUG Processing 447/640 atomic regions from SNP 133859 to 134459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,508 DEBUG Processing 262/544 atomic regions from SNP 78307 to 78907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,545 DEBUG Processing 298/582 atomic regions from SNP 89204 to 89804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,557 DEBUG Processing 639/705 atomic regions from SNP 191414 to 192014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,694 DEBUG Processing 448/640 atomic regions from SNP 134159 to 134759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,696 DEBUG Processing 603/664 atomic regions from SNP 180758 to 181358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,712 DEBUG Processing 263/544 atomic regions from SNP 78607 to 79207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,753 DEBUG Processing 299/582 atomic regions from SNP 89504 to 90104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:03,804 DEBUG Processing 640/705 atomic regions from SNP 191714 to 192314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,917 DEBUG Processing 449/640 atomic regions from SNP 134459 to 135059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:03,919 DEBUG Processing 264/544 atomic regions from SNP 78907 to 79507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:03,922 DEBUG Processing 604/664 atomic regions from SNP 181058 to 181658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:03,958 DEBUG Processing 300/582 atomic regions from SNP 89804 to 90404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,049 DEBUG Processing 641/705 atomic regions from SNP 192014 to 192614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,121 DEBUG Processing 265/544 atomic regions from SNP 79207 to 79807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,141 DEBUG Processing 450/640 atomic regions from SNP 134759 to 135359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,151 DEBUG Processing 605/664 atomic regions from SNP 181358 to 181958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,167 DEBUG Processing 301/582 atomic regions from SNP 90104 to 90704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,293 DEBUG Processing 642/705 atomic regions from SNP 192314 to 192914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,326 DEBUG Processing 266/544 atomic regions from SNP 79507 to 80107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,368 DEBUG Processing 451/640 atomic regions from SNP 135059 to 135659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,380 DEBUG Processing 302/582 atomic regions from SNP 90404 to 91004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,404 DEBUG Processing 606/664 atomic regions from SNP 181658 to 182258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,523 DEBUG Processing 267/544 atomic regions from SNP 79807 to 80407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,542 DEBUG Processing 643/705 atomic regions from SNP 192614 to 193214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,592 DEBUG Processing 303/582 atomic regions from SNP 90704 to 91304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,598 DEBUG Processing 452/640 atomic regions from SNP 135359 to 135959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,658 DEBUG Processing 607/664 atomic regions from SNP 181958 to 182558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,722 DEBUG Processing 268/544 atomic regions from SNP 80107 to 80707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:04,795 DEBUG Processing 644/705 atomic regions from SNP 192914 to 193514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,804 DEBUG Processing 304/582 atomic regions from SNP 91004 to 91604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:04,864 DEBUG Processing 453/640 atomic regions from SNP 135659 to 136259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:04,891 DEBUG Processing 608/664 atomic regions from SNP 182258 to 182858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:04,923 DEBUG Processing 269/544 atomic regions from SNP 80407 to 81007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,005 DEBUG Processing 305/582 atomic regions from SNP 91304 to 91904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,041 DEBUG Processing 645/705 atomic regions from SNP 193214 to 193814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,119 DEBUG Processing 454/640 atomic regions from SNP 135959 to 136559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,119 DEBUG Processing 609/664 atomic regions from SNP 182558 to 183158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,129 DEBUG Processing 270/544 atomic regions from SNP 80707 to 81307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,213 DEBUG Processing 306/582 atomic regions from SNP 91604 to 92204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,286 DEBUG Processing 646/705 atomic regions from SNP 193514 to 194114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,336 DEBUG Processing 271/544 atomic regions from SNP 81007 to 81607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,348 DEBUG Processing 610/664 atomic regions from SNP 182858 to 183458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,366 DEBUG Processing 455/640 atomic regions from SNP 136259 to 136859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,423 DEBUG Processing 307/582 atomic regions from SNP 91904 to 92504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,535 DEBUG Processing 647/705 atomic regions from SNP 193814 to 194414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,541 DEBUG Processing 272/544 atomic regions from SNP 81307 to 81907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,577 DEBUG Processing 611/664 atomic regions from SNP 183158 to 183758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,615 DEBUG Processing 456/640 atomic regions from SNP 136559 to 137159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,644 DEBUG Processing 308/582 atomic regions from SNP 92204 to 92804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,739 DEBUG Processing 273/544 atomic regions from SNP 81607 to 82207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:05,787 DEBUG Processing 648/705 atomic regions from SNP 194114 to 194714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,807 DEBUG Processing 612/664 atomic regions from SNP 183458 to 184058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:05,849 DEBUG Processing 457/640 atomic regions from SNP 136859 to 137459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:05,875 DEBUG Processing 309/582 atomic regions from SNP 92504 to 93104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:05,952 DEBUG Processing 274/544 atomic regions from SNP 81907 to 82507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,042 DEBUG Processing 613/664 atomic regions from SNP 183758 to 184358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,044 DEBUG Processing 649/705 atomic regions from SNP 194414 to 195014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,083 DEBUG Processing 458/640 atomic regions from SNP 137159 to 137759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,095 DEBUG Processing 310/582 atomic regions from SNP 92804 to 93404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,170 DEBUG Processing 275/544 atomic regions from SNP 82207 to 82807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,269 DEBUG Processing 614/664 atomic regions from SNP 184058 to 184658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,300 DEBUG Processing 650/705 atomic regions from SNP 194714 to 195314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,307 DEBUG Processing 311/582 atomic regions from SNP 93104 to 93704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,316 DEBUG Processing 459/640 atomic regions from SNP 137459 to 138059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,366 DEBUG Processing 276/544 atomic regions from SNP 82507 to 83107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,498 DEBUG Processing 615/664 atomic regions from SNP 184358 to 184958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,522 DEBUG Processing 312/582 atomic regions from SNP 93404 to 94004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,553 DEBUG Processing 460/640 atomic regions from SNP 137759 to 138359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,559 DEBUG Processing 651/705 atomic regions from SNP 195014 to 195614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,572 DEBUG Processing 277/544 atomic regions from SNP 82807 to 83407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,723 DEBUG Processing 616/664 atomic regions from SNP 184658 to 185258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,733 DEBUG Processing 313/582 atomic regions from SNP 93704 to 94304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,782 DEBUG Processing 278/544 atomic regions from SNP 83107 to 83707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:06,791 DEBUG Processing 461/640 atomic regions from SNP 138059 to 138659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:06,815 DEBUG Processing 652/705 atomic regions from SNP 195314 to 195914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,939 DEBUG Processing 314/582 atomic regions from SNP 94004 to 94604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:06,959 DEBUG Processing 617/664 atomic regions from SNP 184958 to 185558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:06,991 DEBUG Processing 279/544 atomic regions from SNP 83407 to 84007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,028 DEBUG Processing 462/640 atomic regions from SNP 138359 to 138959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,063 DEBUG Processing 653/705 atomic regions from SNP 195614 to 196214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,154 DEBUG Processing 315/582 atomic regions from SNP 94304 to 94904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,191 DEBUG Processing 280/544 atomic regions from SNP 83707 to 84307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,209 DEBUG Processing 618/664 atomic regions from SNP 185258 to 185858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,256 DEBUG Processing 463/640 atomic regions from SNP 138659 to 139259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,305 DEBUG Processing 654/705 atomic regions from SNP 195914 to 196514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,363 DEBUG Processing 316/582 atomic regions from SNP 94604 to 95204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,382 DEBUG Processing 281/544 atomic regions from SNP 84007 to 84607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,442 DEBUG Processing 619/664 atomic regions from SNP 185558 to 186158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,487 DEBUG Processing 464/640 atomic regions from SNP 138959 to 139559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,557 DEBUG Processing 655/705 atomic regions from SNP 196214 to 196814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,569 DEBUG Processing 317/582 atomic regions from SNP 94904 to 95504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,579 DEBUG Processing 282/544 atomic regions from SNP 84307 to 84907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,660 DEBUG Processing 620/664 atomic regions from SNP 185858 to 186458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,711 DEBUG Processing 465/640 atomic regions from SNP 139259 to 139859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,775 DEBUG Processing 318/582 atomic regions from SNP 95204 to 95804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,782 DEBUG Processing 283/544 atomic regions from SNP 84607 to 85207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:07,804 DEBUG Processing 656/705 atomic regions from SNP 196514 to 197114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,872 DEBUG Processing 621/664 atomic regions from SNP 186158 to 186758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:07,943 DEBUG Processing 466/640 atomic regions from SNP 139559 to 140159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:07,983 DEBUG Processing 319/582 atomic regions from SNP 95504 to 96104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:07,990 DEBUG Processing 284/544 atomic regions from SNP 84907 to 85507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,055 DEBUG Processing 657/705 atomic regions from SNP 196814 to 197414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,087 DEBUG Processing 622/664 atomic regions from SNP 186458 to 187058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,159 DEBUG Processing 467/640 atomic regions from SNP 139859 to 140459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,189 DEBUG Processing 320/582 atomic regions from SNP 95804 to 96404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,195 DEBUG Processing 285/544 atomic regions from SNP 85207 to 85807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,298 DEBUG Processing 658/705 atomic regions from SNP 197114 to 197714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,315 DEBUG Processing 623/664 atomic regions from SNP 186758 to 187358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,373 DEBUG Processing 468/640 atomic regions from SNP 140159 to 140759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,391 DEBUG Processing 321/582 atomic regions from SNP 96104 to 96704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,397 DEBUG Processing 286/544 atomic regions from SNP 85507 to 86107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,543 DEBUG Processing 659/705 atomic regions from SNP 197414 to 198014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,558 DEBUG Processing 624/664 atomic regions from SNP 187058 to 187658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,590 DEBUG Processing 322/582 atomic regions from SNP 96404 to 97004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,594 DEBUG Processing 469/640 atomic regions from SNP 140459 to 141059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,594 DEBUG Processing 287/544 atomic regions from SNP 85807 to 86407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,784 DEBUG Processing 660/705 atomic regions from SNP 197714 to 198314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,788 DEBUG Processing 323/582 atomic regions from SNP 96704 to 97304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,790 DEBUG Processing 288/544 atomic regions from SNP 86107 to 86707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:08,800 DEBUG Processing 625/664 atomic regions from SNP 187358 to 187958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:08,810 DEBUG Processing 470/640 atomic regions from SNP 140759 to 141359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:08,988 DEBUG Processing 324/582 atomic regions from SNP 97004 to 97604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:08,991 DEBUG Processing 289/544 atomic regions from SNP 86407 to 87007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,020 DEBUG Processing 626/664 atomic regions from SNP 187658 to 188258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,025 DEBUG Processing 661/705 atomic regions from SNP 198014 to 198614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,032 DEBUG Processing 471/640 atomic regions from SNP 141059 to 141659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,197 DEBUG Processing 325/582 atomic regions from SNP 97304 to 97904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,202 DEBUG Processing 290/544 atomic regions from SNP 86707 to 87307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,250 DEBUG Processing 627/664 atomic regions from SNP 187958 to 188558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,253 DEBUG Processing 472/640 atomic regions from SNP 141359 to 141959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,268 DEBUG Processing 662/705 atomic regions from SNP 198314 to 198914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,413 DEBUG Processing 326/582 atomic regions from SNP 97604 to 98204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,416 DEBUG Processing 291/544 atomic regions from SNP 87007 to 87607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,477 DEBUG Processing 473/640 atomic regions from SNP 141659 to 142259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,482 DEBUG Processing 628/664 atomic regions from SNP 188258 to 188858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,553 DEBUG Processing 663/705 atomic regions from SNP 198614 to 199214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,622 DEBUG Processing 327/582 atomic regions from SNP 97904 to 98504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,625 DEBUG Processing 292/544 atomic regions from SNP 87307 to 87907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,707 DEBUG Processing 474/640 atomic regions from SNP 141959 to 142559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,709 DEBUG Processing 629/664 atomic regions from SNP 188558 to 189158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:09,824 DEBUG Processing 664/705 atomic regions from SNP 198914 to 199514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,826 DEBUG Processing 328/582 atomic regions from SNP 98204 to 98804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:09,826 DEBUG Processing 293/544 atomic regions from SNP 87607 to 88207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:09,930 DEBUG Processing 475/640 atomic regions from SNP 142259 to 142859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:09,940 DEBUG Processing 630/664 atomic regions from SNP 188858 to 189458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,020 DEBUG Processing 294/544 atomic regions from SNP 87907 to 88507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,022 DEBUG Processing 329/582 atomic regions from SNP 98504 to 99104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,089 DEBUG Processing 665/705 atomic regions from SNP 199214 to 199814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,154 DEBUG Processing 476/640 atomic regions from SNP 142559 to 143159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,187 DEBUG Processing 631/664 atomic regions from SNP 189158 to 189758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,219 DEBUG Processing 295/544 atomic regions from SNP 88207 to 88807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,224 DEBUG Processing 330/582 atomic regions from SNP 98804 to 99404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,353 DEBUG Processing 666/705 atomic regions from SNP 199514 to 200114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,376 DEBUG Processing 477/640 atomic regions from SNP 142859 to 143459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,414 DEBUG Processing 632/664 atomic regions from SNP 189458 to 190058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,424 DEBUG Processing 296/544 atomic regions from SNP 88507 to 89107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,428 DEBUG Processing 331/582 atomic regions from SNP 99104 to 99704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,619 DEBUG Processing 478/640 atomic regions from SNP 143159 to 143759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,623 DEBUG Processing 667/705 atomic regions from SNP 199814 to 200414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,631 DEBUG Processing 297/544 atomic regions from SNP 88807 to 89407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,638 DEBUG Processing 332/582 atomic regions from SNP 99404 to 100004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,641 DEBUG Processing 633/664 atomic regions from SNP 189758 to 190358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,835 DEBUG Processing 298/544 atomic regions from SNP 89107 to 89707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:10,847 DEBUG Processing 333/582 atomic regions from SNP 99704 to 100304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:10,859 DEBUG Processing 479/640 atomic regions from SNP 143459 to 144059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:10,870 DEBUG Processing 634/664 atomic regions from SNP 190058 to 190658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:10,895 DEBUG Processing 668/705 atomic regions from SNP 200114 to 200714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,032 DEBUG Processing 299/544 atomic regions from SNP 89407 to 90007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,049 DEBUG Processing 334/582 atomic regions from SNP 100004 to 100604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,083 DEBUG Processing 480/640 atomic regions from SNP 143759 to 144359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,095 DEBUG Processing 635/664 atomic regions from SNP 190358 to 190958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,164 DEBUG Processing 669/705 atomic regions from SNP 200414 to 201014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,224 DEBUG Processing 300/544 atomic regions from SNP 89707 to 90307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,246 DEBUG Processing 335/582 atomic regions from SNP 100304 to 100904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,303 DEBUG Processing 481/640 atomic regions from SNP 144059 to 144659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,315 DEBUG Processing 636/664 atomic regions from SNP 190658 to 191258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,419 DEBUG Processing 301/544 atomic regions from SNP 90007 to 90607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,428 DEBUG Processing 670/705 atomic regions from SNP 200714 to 201314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,445 DEBUG Processing 336/582 atomic regions from SNP 100604 to 101204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,521 DEBUG Processing 482/640 atomic regions from SNP 144359 to 144959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,529 DEBUG Processing 637/664 atomic regions from SNP 190958 to 191558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,619 DEBUG Processing 302/544 atomic regions from SNP 90307 to 90907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,646 DEBUG Processing 337/582 atomic regions from SNP 100904 to 101504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,686 DEBUG Processing 671/705 atomic regions from SNP 201014 to 201614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,740 DEBUG Processing 483/640 atomic regions from SNP 144659 to 145259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:11,742 DEBUG Processing 638/664 atomic regions from SNP 191258 to 191858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,818 DEBUG Processing 303/544 atomic regions from SNP 90607 to 91207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:11,849 DEBUG Processing 338/582 atomic regions from SNP 101204 to 101804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:11,933 DEBUG Processing 672/705 atomic regions from SNP 201314 to 201914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,956 DEBUG Processing 639/664 atomic regions from SNP 191558 to 192158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:11,960 DEBUG Processing 484/640 atomic regions from SNP 144959 to 145559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,021 DEBUG Processing 304/544 atomic regions from SNP 90907 to 91507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,053 DEBUG Processing 339/582 atomic regions from SNP 101504 to 102104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,171 DEBUG Processing 640/664 atomic regions from SNP 191858 to 192458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,174 DEBUG Processing 485/640 atomic regions from SNP 145259 to 145859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,198 DEBUG Processing 673/705 atomic regions from SNP 201614 to 202214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,225 DEBUG Processing 305/544 atomic regions from SNP 91207 to 91807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,255 DEBUG Processing 340/582 atomic regions from SNP 101804 to 102404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,387 DEBUG Processing 641/664 atomic regions from SNP 192158 to 192758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,393 DEBUG Processing 486/640 atomic regions from SNP 145559 to 146159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,435 DEBUG Processing 306/544 atomic regions from SNP 91507 to 92107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,460 DEBUG Processing 341/582 atomic regions from SNP 102104 to 102704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,467 DEBUG Processing 674/705 atomic regions from SNP 201914 to 202514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,602 DEBUG Processing 642/664 atomic regions from SNP 192458 to 193058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,603 DEBUG Processing 487/640 atomic regions from SNP 145859 to 146459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,662 DEBUG Processing 342/582 atomic regions from SNP 102404 to 103004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,670 DEBUG Processing 307/544 atomic regions from SNP 91807 to 92407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,727 DEBUG Processing 675/705 atomic regions from SNP 202214 to 202814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,817 DEBUG Processing 488/640 atomic regions from SNP 146159 to 146759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:12,820 DEBUG Processing 643/664 atomic regions from SNP 192758 to 193358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,867 DEBUG Processing 343/582 atomic regions from SNP 102704 to 103304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:12,898 DEBUG Processing 308/544 atomic regions from SNP 92107 to 92707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:12,984 DEBUG Processing 676/705 atomic regions from SNP 202514 to 203114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,036 DEBUG Processing 489/640 atomic regions from SNP 146459 to 147059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,038 DEBUG Processing 644/664 atomic regions from SNP 193058 to 193658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,073 DEBUG Processing 344/582 atomic regions from SNP 103004 to 103604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,097 DEBUG Processing 309/544 atomic regions from SNP 92407 to 93007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,235 DEBUG Processing 677/705 atomic regions from SNP 202814 to 203414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,262 DEBUG Processing 490/640 atomic regions from SNP 146759 to 147359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,262 DEBUG Processing 645/664 atomic regions from SNP 193358 to 193958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,278 DEBUG Processing 345/582 atomic regions from SNP 103304 to 103904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,299 DEBUG Processing 310/544 atomic regions from SNP 92707 to 93307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,482 DEBUG Processing 346/582 atomic regions from SNP 103604 to 104204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,486 DEBUG Processing 646/664 atomic regions from SNP 193658 to 194258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,488 DEBUG Processing 491/640 atomic regions from SNP 147059 to 147659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,500 DEBUG Processing 311/544 atomic regions from SNP 93007 to 93607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,502 DEBUG Processing 678/705 atomic regions from SNP 203114 to 203714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,685 DEBUG Processing 347/582 atomic regions from SNP 103904 to 104504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,704 DEBUG Processing 312/544 atomic regions from SNP 93307 to 93907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,711 DEBUG Processing 647/664 atomic regions from SNP 193958 to 194558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,712 DEBUG Processing 492/640 atomic regions from SNP 147359 to 147959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:13,766 DEBUG Processing 679/705 atomic regions from SNP 203414 to 204014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,887 DEBUG Processing 348/582 atomic regions from SNP 104204 to 104804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:13,901 DEBUG Processing 313/544 atomic regions from SNP 93607 to 94207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:13,928 DEBUG Processing 648/664 atomic regions from SNP 194258 to 194858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,931 DEBUG Processing 493/640 atomic regions from SNP 147659 to 148259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,011 DEBUG Processing 680/705 atomic regions from SNP 203714 to 204314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,094 DEBUG Processing 349/582 atomic regions from SNP 104504 to 105104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,101 DEBUG Processing 314/544 atomic regions from SNP 93907 to 94507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,145 DEBUG Processing 494/640 atomic regions from SNP 147959 to 148559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,145 DEBUG Processing 649/664 atomic regions from SNP 194558 to 195158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,279 DEBUG Processing 681/705 atomic regions from SNP 204014 to 204614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,304 DEBUG Processing 350/582 atomic regions from SNP 104804 to 105404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,306 DEBUG Processing 315/544 atomic regions from SNP 94207 to 94807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,362 DEBUG Processing 650/664 atomic regions from SNP 194858 to 195458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,362 DEBUG Processing 495/640 atomic regions from SNP 148259 to 148859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,512 DEBUG Processing 351/582 atomic regions from SNP 105104 to 105704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,513 DEBUG Processing 316/544 atomic regions from SNP 94507 to 95107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,531 DEBUG Processing 682/705 atomic regions from SNP 204314 to 204914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,584 DEBUG Processing 651/664 atomic regions from SNP 195158 to 195758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,586 DEBUG Processing 496/640 atomic regions from SNP 148559 to 149159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,715 DEBUG Processing 317/544 atomic regions from SNP 94807 to 95407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,715 DEBUG Processing 352/582 atomic regions from SNP 105404 to 106004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:14,783 DEBUG Processing 683/705 atomic regions from SNP 204614 to 205214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,808 DEBUG Processing 652/664 atomic regions from SNP 195458 to 196058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,812 DEBUG Processing 497/640 atomic regions from SNP 148859 to 149459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:14,911 DEBUG Processing 318/544 atomic regions from SNP 95107 to 95707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:14,916 DEBUG Processing 353/582 atomic regions from SNP 105704 to 106304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,030 DEBUG Processing 653/664 atomic regions from SNP 195758 to 196358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,042 DEBUG Processing 684/705 atomic regions from SNP 204914 to 205514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,042 DEBUG Processing 498/640 atomic regions from SNP 149159 to 149759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,111 DEBUG Processing 319/544 atomic regions from SNP 95407 to 96007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,118 DEBUG Processing 354/582 atomic regions from SNP 106004 to 106604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,250 DEBUG Processing 654/664 atomic regions from SNP 196058 to 196658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,270 DEBUG Processing 499/640 atomic regions from SNP 149459 to 150059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,312 DEBUG Processing 320/544 atomic regions from SNP 95707 to 96307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,313 DEBUG Processing 685/705 atomic regions from SNP 205214 to 205814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,320 DEBUG Processing 355/582 atomic regions from SNP 106304 to 106904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,476 DEBUG Processing 655/664 atomic regions from SNP 196358 to 196958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,505 DEBUG Processing 500/640 atomic regions from SNP 149759 to 150359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,525 DEBUG Processing 321/544 atomic regions from SNP 96007 to 96607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,530 DEBUG Processing 356/582 atomic regions from SNP 106604 to 107204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,566 DEBUG Processing 686/705 atomic regions from SNP 205514 to 206114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,697 DEBUG Processing 656/664 atomic regions from SNP 196658 to 197258 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,731 DEBUG Processing 501/640 atomic regions from SNP 150059 to 150659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:15,732 DEBUG Processing 357/582 atomic regions from SNP 106904 to 107504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,748 DEBUG Processing 322/544 atomic regions from SNP 96307 to 96907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,805 DEBUG Processing 687/705 atomic regions from SNP 205814 to 206414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,919 DEBUG Processing 657/664 atomic regions from SNP 196958 to 197558 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,936 DEBUG Processing 358/582 atomic regions from SNP 107204 to 107804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:15,951 DEBUG Processing 323/544 atomic regions from SNP 96607 to 97207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:15,957 DEBUG Processing 502/640 atomic regions from SNP 150359 to 150959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,004 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:54:16,006 DEBUG chr17: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:54:16,049 DEBUG Processing 688/705 atomic regions from SNP 206114 to 206714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,140 DEBUG Processing 658/664 atomic regions from SNP 197258 to 197858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,144 DEBUG Processing 359/582 atomic regions from SNP 107504 to 108104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,156 DEBUG Processing 324/544 atomic regions from SNP 96907 to 97507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,180 DEBUG Processing 503/640 atomic regions from SNP 150659 to 151259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,287 DEBUG Processing 689/705 atomic regions from SNP 206414 to 207014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,346 DEBUG Processing 360/582 atomic regions from SNP 107804 to 108404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,356 DEBUG Processing 325/544 atomic regions from SNP 97207 to 97807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,362 DEBUG Processing 659/664 atomic regions from SNP 197558 to 198158 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,399 DEBUG Processing 504/640 atomic regions from SNP 150959 to 151559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,534 DEBUG Processing 690/705 atomic regions from SNP 206714 to 207314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,551 DEBUG Processing 361/582 atomic regions from SNP 108104 to 108704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,555 DEBUG Processing 326/544 atomic regions from SNP 97507 to 98107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,587 DEBUG Processing 660/664 atomic regions from SNP 197858 to 198458 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,620 DEBUG Processing 505/640 atomic regions from SNP 151259 to 151859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,754 DEBUG Processing 327/544 atomic regions from SNP 97807 to 98407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,777 DEBUG Processing 691/705 atomic regions from SNP 207014 to 207614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,783 DEBUG Processing 362/582 atomic regions from SNP 108404 to 109004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:16,811 DEBUG Processing 661/664 atomic regions from SNP 198158 to 198758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,843 DEBUG Processing 506/640 atomic regions from SNP 151559 to 152159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:16,957 DEBUG Processing 328/544 atomic regions from SNP 98107 to 98707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:16,986 DEBUG Processing 363/582 atomic regions from SNP 108704 to 109304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,020 DEBUG Processing 692/705 atomic regions from SNP 207314 to 207914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,032 DEBUG Processing 662/664 atomic regions from SNP 198458 to 199058 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,059 DEBUG Processing 507/640 atomic regions from SNP 151859 to 152459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,152 DEBUG Processing 329/544 atomic regions from SNP 98407 to 99007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,192 DEBUG Processing 364/582 atomic regions from SNP 109004 to 109604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,259 DEBUG Processing 693/705 atomic regions from SNP 207614 to 208214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,270 DEBUG Processing 663/664 atomic regions from SNP 198758 to 199358 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,282 DEBUG Processing 508/640 atomic regions from SNP 152159 to 152759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,348 DEBUG Processing 330/544 atomic regions from SNP 98707 to 99307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,391 DEBUG Processing 365/582 atomic regions from SNP 109304 to 109904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,496 DEBUG Processing 694/705 atomic regions from SNP 207914 to 208514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,502 DEBUG Processing 509/640 atomic regions from SNP 152459 to 153059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,506 DEBUG Processing 664/664 atomic regions from SNP 199058 to 199658 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,542 DEBUG Processing 331/544 atomic regions from SNP 99007 to 99607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,582 DEBUG Processing 366/582 atomic regions from SNP 109604 to 110204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,660 DEBUG Unique SNPs positions in subchromosome 1: 199659 2025-01-31 09:54:17,714 DEBUG Processing 510/640 atomic regions from SNP 152759 to 153359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,741 DEBUG Processing 332/544 atomic regions from SNP 99307 to 99907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,752 DEBUG Processing 695/705 atomic regions from SNP 208214 to 208814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,780 DEBUG Processing 367/582 atomic regions from SNP 109904 to 110504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,828 DEBUG chr17 total SNP count: 155489 2025-01-31 09:54:17,828 DEBUG chr17 length: 94987271 2025-01-31 09:54:17,828 DEBUG ----------------------------------------- 2025-01-31 09:54:17,829 INFO Processing SNPs in chr17 2025-01-31 09:54:17,930 DEBUG Processing 511/640 atomic regions from SNP 153059 to 153659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:17,930 DEBUG Processing 333/544 atomic regions from SNP 99607 to 100207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:17,982 DEBUG Processing 368/582 atomic regions from SNP 110204 to 110804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:17,997 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155489)] 2025-01-31 09:54:18,031 DEBUG Processing 696/705 atomic regions from SNP 208514 to 209114 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,112 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:18,116 DEBUG Processing 334/544 atomic regions from SNP 99907 to 100507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,144 DEBUG Processing 512/640 atomic regions from SNP 153359 to 153959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,172 DEBUG Processing 369/582 atomic regions from SNP 110504 to 111104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,295 DEBUG Processing 697/705 atomic regions from SNP 208814 to 209414 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,306 DEBUG Processing 335/544 atomic regions from SNP 100207 to 100807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,358 DEBUG Processing 513/640 atomic regions from SNP 153659 to 154259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,365 DEBUG Processing 370/582 atomic regions from SNP 110804 to 111404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,496 DEBUG Processing 336/544 atomic regions from SNP 100507 to 101107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,561 DEBUG Processing 371/582 atomic regions from SNP 111104 to 111704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,570 DEBUG Processing 698/705 atomic regions from SNP 209114 to 209714 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,577 DEBUG Processing 514/640 atomic regions from SNP 153959 to 154559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,686 DEBUG Processing 337/544 atomic regions from SNP 100807 to 101407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,757 DEBUG Processing 372/582 atomic regions from SNP 111404 to 112004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:18,799 DEBUG Processing 515/640 atomic regions from SNP 154259 to 154859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:18,848 DEBUG Processing 699/705 atomic regions from SNP 209414 to 210014 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,889 DEBUG Processing 338/544 atomic regions from SNP 101107 to 101707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:18,957 DEBUG Processing 373/582 atomic regions from SNP 111704 to 112304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,023 DEBUG Processing 516/640 atomic regions from SNP 154559 to 155159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,077 DEBUG Processing 339/544 atomic regions from SNP 101407 to 102007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,106 DEBUG Processing 700/705 atomic regions from SNP 209714 to 210314 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,146 DEBUG Processing 374/582 atomic regions from SNP 112004 to 112604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,236 DEBUG Processing 517/640 atomic regions from SNP 154859 to 155459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,265 DEBUG Processing 340/544 atomic regions from SNP 101707 to 102307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,336 DEBUG Processing 375/582 atomic regions from SNP 112304 to 112904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,354 DEBUG Processing 701/705 atomic regions from SNP 210014 to 210614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,448 DEBUG Processing 518/640 atomic regions from SNP 155159 to 155759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,455 DEBUG Processing 341/544 atomic regions from SNP 102007 to 102607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,529 DEBUG Processing 376/582 atomic regions from SNP 112604 to 113204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,595 DEBUG Processing 702/705 atomic regions from SNP 210314 to 210914 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,643 DEBUG Processing 342/544 atomic regions from SNP 102307 to 102907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,668 DEBUG Processing 519/640 atomic regions from SNP 155459 to 156059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,726 DEBUG Processing 377/582 atomic regions from SNP 112904 to 113504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:19,828 DEBUG Processing 343/544 atomic regions from SNP 102607 to 103207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:19,839 DEBUG Processing 703/705 atomic regions from SNP 210614 to 211214 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,909 DEBUG Processing 520/640 atomic regions from SNP 155759 to 156359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:19,929 DEBUG Processing 378/582 atomic regions from SNP 113204 to 113804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,029 DEBUG Processing 344/544 atomic regions from SNP 102907 to 103507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,096 DEBUG Processing 704/705 atomic regions from SNP 210914 to 211514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,149 DEBUG Processing 379/582 atomic regions from SNP 113504 to 114104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,152 DEBUG Processing 521/640 atomic regions from SNP 156059 to 156659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,237 DEBUG Processing 345/544 atomic regions from SNP 103207 to 103807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,325 DEBUG Processing 705/705 atomic regions from SNP 211214 to 211814 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,341 DEBUG Processing 380/582 atomic regions from SNP 113804 to 114404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,368 DEBUG Processing 522/640 atomic regions from SNP 156359 to 156959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,433 DEBUG Processing 346/544 atomic regions from SNP 103507 to 104107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,464 DEBUG Unique SNPs positions in subchromosome 1: 211815 2025-01-31 09:54:20,535 DEBUG Processing 381/582 atomic regions from SNP 114104 to 114704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,582 DEBUG Processing 523/640 atomic regions from SNP 156659 to 157259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,625 DEBUG Processing 347/544 atomic regions from SNP 103807 to 104407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,730 DEBUG Processing 382/582 atomic regions from SNP 114404 to 115004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,791 DEBUG Processing 524/640 atomic regions from SNP 156959 to 157559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:20,811 DEBUG Processing 348/544 atomic regions from SNP 104107 to 104707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:20,927 DEBUG Processing 383/582 atomic regions from SNP 114704 to 115304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:20,998 DEBUG Processing 349/544 atomic regions from SNP 104407 to 105007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,022 DEBUG Processing 525/640 atomic regions from SNP 157259 to 157859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,122 DEBUG Processing 384/582 atomic regions from SNP 115004 to 115604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,188 DEBUG Processing 350/544 atomic regions from SNP 104707 to 105307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,229 DEBUG Processing 526/640 atomic regions from SNP 157559 to 158159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,315 DEBUG Processing 385/582 atomic regions from SNP 115304 to 115904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,381 DEBUG Processing 351/544 atomic regions from SNP 105007 to 105607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,433 DEBUG Processing 527/640 atomic regions from SNP 157859 to 158459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,505 DEBUG Processing 386/582 atomic regions from SNP 115604 to 116204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,574 DEBUG Processing 352/544 atomic regions from SNP 105307 to 105907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,664 DEBUG Processing 528/640 atomic regions from SNP 158159 to 158759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,697 DEBUG Processing 387/582 atomic regions from SNP 115904 to 116504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,764 DEBUG Processing 353/544 atomic regions from SNP 105607 to 106207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:21,895 DEBUG Processing 529/640 atomic regions from SNP 158459 to 159059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:21,897 DEBUG Processing 388/582 atomic regions from SNP 116204 to 116804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:21,958 DEBUG Processing 354/544 atomic regions from SNP 105907 to 106507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,100 DEBUG Processing 389/582 atomic regions from SNP 116504 to 117104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,126 DEBUG Processing 530/640 atomic regions from SNP 158759 to 159359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,161 DEBUG Processing 355/544 atomic regions from SNP 106207 to 106807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,296 DEBUG Processing 390/582 atomic regions from SNP 116804 to 117404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,339 DEBUG Processing 531/640 atomic regions from SNP 159059 to 159659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,370 DEBUG Processing 356/544 atomic regions from SNP 106507 to 107107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,493 DEBUG Processing 391/582 atomic regions from SNP 117104 to 117704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,558 DEBUG Processing 532/640 atomic regions from SNP 159359 to 159959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,579 DEBUG Processing 357/544 atomic regions from SNP 106807 to 107407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,624 DEBUG Subchromosome time: 184.1669511348009, subchromosome SNPs: 199659 2025-01-31 09:54:22,625 DEBUG Estimated BADs: [0.85, 10.25, 0.28, 17.09, 3.42, 0.24, 1.71, 3.42, 1.71, 3.42, 1.71, 6.84, 3.42, 1.71, 3.42, 1.71, 5.13, 1.71, 17.09, 0.43, 17.09, 1.71, 17.09, 0.85, 17.09, 0.57, 3.42, 17.09, 1.71, 3.42, 0.85, 5.13] SNP counts: [29540, 1536, 1641, 925, 2855, 3918, 10345, 8303, 8558, 15445, 4902, 2337, 7910, 4944, 3538, 9399, 4265, 5999, 107, 4319, 97, 1267, 294, 3322, 84, 11711, 17993, 115, 19430, 3892, 9887, 781] SNP IDs counts: [29540, 1536, 1641, 925, 2855, 3918, 10345, 8303, 8558, 15445, 4902, 2337, 7910, 4944, 3538, 9399, 4265, 5999, 107, 4319, 97, 1267, 294, 3322, 84, 11711, 17993, 115, 19430, 3892, 9887, 781] Critical gap: 603013bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 22.05Mbp, 23.26Mbp, 23.77Mbp, 25.36Mbp, 27.95Mbp, 33.93Mbp, 38.48Mbp, 43.17Mbp, 51.83Mbp, 54.45Mbp, 55.69Mbp, 59.85Mbp, 63.30Mbp, 65.29Mbp, 72.28Mbp, 74.59Mbp, 78.16Mbp, 78.21Mbp, 80.88Mbp, 80.93Mbp, 81.63Mbp, 81.78Mbp, 83.69Mbp, 83.74Mbp, 90.90Mbp, 100.73Mbp, 100.79Mbp, 111.68Mbp, 113.79Mbp, 119.43Mbp, 120.42Mbp] 2025-01-31 09:54:22,625 DEBUG chr13 time: 184.16761309280992 s 2025-01-31 09:54:22,692 DEBUG Processing 392/582 atomic regions from SNP 117404 to 118004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,749 DEBUG chr13: Fitting background model for 32 segments 2025-01-31 09:54:22,777 DEBUG Processing 533/640 atomic regions from SNP 159659 to 160259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:22,783 DEBUG Processing 358/544 atomic regions from SNP 107107 to 107707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,893 DEBUG Processing 393/582 atomic regions from SNP 117704 to 118304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:22,981 DEBUG Processing 359/544 atomic regions from SNP 107407 to 108007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:22,989 DEBUG Processing 534/640 atomic regions from SNP 159959 to 160559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,117 DEBUG Processing 394/582 atomic regions from SNP 118004 to 118604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,178 DEBUG Processing 360/544 atomic regions from SNP 107707 to 108307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,192 DEBUG Processing 535/640 atomic regions from SNP 160259 to 160859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,354 DEBUG Processing 395/582 atomic regions from SNP 118304 to 118904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,381 DEBUG Processing 361/544 atomic regions from SNP 108007 to 108607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,398 DEBUG Processing 536/640 atomic regions from SNP 160559 to 161159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,565 DEBUG Processing 396/582 atomic regions from SNP 118604 to 119204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,587 DEBUG Processing 362/544 atomic regions from SNP 108307 to 108907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,603 DEBUG Processing 537/640 atomic regions from SNP 160859 to 161459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,770 DEBUG Processing 397/582 atomic regions from SNP 118904 to 119504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,794 DEBUG Processing 363/544 atomic regions from SNP 108607 to 109207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:23,824 DEBUG Processing 538/640 atomic regions from SNP 161159 to 161759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:23,985 DEBUG Processing 398/582 atomic regions from SNP 119204 to 119804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:23,998 DEBUG Processing 364/544 atomic regions from SNP 108907 to 109507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,044 DEBUG Processing 539/640 atomic regions from SNP 161459 to 162059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,202 DEBUG Processing 365/544 atomic regions from SNP 109207 to 109807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,214 DEBUG Processing 399/582 atomic regions from SNP 119504 to 120104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,284 DEBUG Processing 540/640 atomic regions from SNP 161759 to 162359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,402 DEBUG Processing 366/544 atomic regions from SNP 109507 to 110107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,419 DEBUG Processing 400/582 atomic regions from SNP 119804 to 120404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,500 DEBUG Processing 541/640 atomic regions from SNP 162059 to 162659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,605 DEBUG Processing 367/544 atomic regions from SNP 109807 to 110407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,624 DEBUG Processing 401/582 atomic regions from SNP 120104 to 120704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,712 DEBUG Processing 542/640 atomic regions from SNP 162359 to 162959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:24,810 DEBUG Processing 368/544 atomic regions from SNP 110107 to 110707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:24,828 DEBUG Processing 402/582 atomic regions from SNP 120404 to 121004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:24,917 DEBUG Processing 543/640 atomic regions from SNP 162659 to 163259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,016 DEBUG Processing 369/544 atomic regions from SNP 110407 to 111007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,034 DEBUG Processing 403/582 atomic regions from SNP 120704 to 121304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,151 DEBUG Processing 544/640 atomic regions from SNP 162959 to 163559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,220 DEBUG Processing 370/544 atomic regions from SNP 110707 to 111307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,241 DEBUG Processing 404/582 atomic regions from SNP 121004 to 121604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,365 DEBUG Processing 545/640 atomic regions from SNP 163259 to 163859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,425 DEBUG Processing 371/544 atomic regions from SNP 111007 to 111607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,446 DEBUG Processing 405/582 atomic regions from SNP 121304 to 121904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,580 DEBUG Processing 546/640 atomic regions from SNP 163559 to 164159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,626 DEBUG Processing 372/544 atomic regions from SNP 111307 to 111907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,653 DEBUG Processing 406/582 atomic regions from SNP 121604 to 122204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:25,794 DEBUG Processing 547/640 atomic regions from SNP 163859 to 164459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:25,830 DEBUG Processing 373/544 atomic regions from SNP 111607 to 112207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:25,860 DEBUG Processing 407/582 atomic regions from SNP 121904 to 122504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,010 DEBUG Processing 548/640 atomic regions from SNP 164159 to 164759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,038 DEBUG Processing 374/544 atomic regions from SNP 111907 to 112507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,067 DEBUG Processing 408/582 atomic regions from SNP 122204 to 122804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,220 DEBUG Processing 549/640 atomic regions from SNP 164459 to 165059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,243 DEBUG Processing 375/544 atomic regions from SNP 112207 to 112807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,276 DEBUG Processing 409/582 atomic regions from SNP 122504 to 123104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,425 DEBUG Processing 550/640 atomic regions from SNP 164759 to 165359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,441 DEBUG Processing 376/544 atomic regions from SNP 112507 to 113107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,479 DEBUG Processing 410/582 atomic regions from SNP 122804 to 123404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,634 DEBUG Processing 551/640 atomic regions from SNP 165059 to 165659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,642 DEBUG Processing 377/544 atomic regions from SNP 112807 to 113407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,690 DEBUG Processing 411/582 atomic regions from SNP 123104 to 123704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:26,846 DEBUG Processing 552/640 atomic regions from SNP 165359 to 165959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:26,848 DEBUG Processing 378/544 atomic regions from SNP 113107 to 113707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:26,924 DEBUG Processing 412/582 atomic regions from SNP 123404 to 124004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,051 DEBUG Processing 379/544 atomic regions from SNP 113407 to 114007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,082 DEBUG Processing 553/640 atomic regions from SNP 165659 to 166259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,157 DEBUG Processing 413/582 atomic regions from SNP 123704 to 124304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,249 DEBUG Processing 380/544 atomic regions from SNP 113707 to 114307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,310 DEBUG Processing 554/640 atomic regions from SNP 165959 to 166559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,397 DEBUG Processing 414/582 atomic regions from SNP 124004 to 124604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,453 DEBUG Processing 381/544 atomic regions from SNP 114007 to 114607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,512 DEBUG Processing 555/640 atomic regions from SNP 166259 to 166859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,639 DEBUG Processing 415/582 atomic regions from SNP 124304 to 124904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,657 DEBUG Processing 382/544 atomic regions from SNP 114307 to 114907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,720 DEBUG Processing 556/640 atomic regions from SNP 166559 to 167159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:27,862 DEBUG Processing 383/544 atomic regions from SNP 114607 to 115207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:27,881 DEBUG Processing 416/582 atomic regions from SNP 124604 to 125204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:27,947 DEBUG Processing 557/640 atomic regions from SNP 166859 to 167459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,065 DEBUG Processing 384/544 atomic regions from SNP 114907 to 115507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,118 DEBUG Processing 417/582 atomic regions from SNP 124904 to 125504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,190 DEBUG Processing 558/640 atomic regions from SNP 167159 to 167759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,269 DEBUG Processing 385/544 atomic regions from SNP 115207 to 115807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,359 DEBUG Processing 418/582 atomic regions from SNP 125204 to 125804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,428 DEBUG Processing 559/640 atomic regions from SNP 167459 to 168059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,467 DEBUG Processing 386/544 atomic regions from SNP 115507 to 116107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,574 DEBUG Processing 419/582 atomic regions from SNP 125504 to 126104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,663 DEBUG Processing 560/640 atomic regions from SNP 167759 to 168359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,669 DEBUG Processing 387/544 atomic regions from SNP 115807 to 116407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,778 DEBUG Processing 420/582 atomic regions from SNP 125804 to 126404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:28,877 DEBUG Processing 388/544 atomic regions from SNP 116107 to 116707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:28,877 DEBUG Processing 561/640 atomic regions from SNP 168059 to 168659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:28,997 DEBUG Processing 421/582 atomic regions from SNP 126104 to 126704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,084 DEBUG Processing 389/544 atomic regions from SNP 116407 to 117007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,091 DEBUG Processing 562/640 atomic regions from SNP 168359 to 168959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,199 DEBUG Processing 422/582 atomic regions from SNP 126404 to 127004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,287 DEBUG Processing 390/544 atomic regions from SNP 116707 to 117307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,303 DEBUG Processing 563/640 atomic regions from SNP 168659 to 169259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,408 DEBUG Processing 423/582 atomic regions from SNP 126704 to 127304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,485 DEBUG Processing 391/544 atomic regions from SNP 117007 to 117607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,512 DEBUG Processing 564/640 atomic regions from SNP 168959 to 169559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,635 DEBUG Processing 424/582 atomic regions from SNP 127004 to 127604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,680 DEBUG Processing 392/544 atomic regions from SNP 117307 to 117907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,717 DEBUG Processing 565/640 atomic regions from SNP 169259 to 169859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:29,842 DEBUG Processing 425/582 atomic regions from SNP 127304 to 127904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:29,882 DEBUG Processing 393/544 atomic regions from SNP 117607 to 118207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:29,922 DEBUG Processing 566/640 atomic regions from SNP 169559 to 170159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,081 DEBUG Processing 394/544 atomic regions from SNP 117907 to 118507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,083 DEBUG Processing 426/582 atomic regions from SNP 127604 to 128204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,128 DEBUG Processing 567/640 atomic regions from SNP 169859 to 170459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,281 DEBUG Processing 395/544 atomic regions from SNP 118207 to 118807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,309 DEBUG Processing 427/582 atomic regions from SNP 127904 to 128504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,332 DEBUG Processing 568/640 atomic regions from SNP 170159 to 170759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,486 DEBUG Processing 396/544 atomic regions from SNP 118507 to 119107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,535 DEBUG Processing 569/640 atomic regions from SNP 170459 to 171059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,536 DEBUG Processing 428/582 atomic regions from SNP 128204 to 128804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,695 DEBUG Processing 397/544 atomic regions from SNP 118807 to 119407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,750 DEBUG Processing 429/582 atomic regions from SNP 128504 to 129104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:30,755 DEBUG Processing 570/640 atomic regions from SNP 170759 to 171359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,896 DEBUG Processing 398/544 atomic regions from SNP 119107 to 119707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:30,972 DEBUG Processing 571/640 atomic regions from SNP 171059 to 171659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:30,991 DEBUG Processing 430/582 atomic regions from SNP 128804 to 129404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,094 DEBUG Processing 399/544 atomic regions from SNP 119407 to 120007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,187 DEBUG Processing 572/640 atomic regions from SNP 171359 to 171959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,238 DEBUG Processing 431/582 atomic regions from SNP 129104 to 129704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,297 DEBUG Processing 400/544 atomic regions from SNP 119707 to 120307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,396 DEBUG Processing 573/640 atomic regions from SNP 171659 to 172259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,474 DEBUG Processing 432/582 atomic regions from SNP 129404 to 130004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,507 DEBUG Processing 401/544 atomic regions from SNP 120007 to 120607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,603 DEBUG Processing 574/640 atomic regions from SNP 171959 to 172559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,714 DEBUG Processing 433/582 atomic regions from SNP 129704 to 130304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:31,717 DEBUG Processing 402/544 atomic regions from SNP 120307 to 120907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,807 DEBUG Processing 575/640 atomic regions from SNP 172259 to 172859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:31,927 DEBUG Processing 403/544 atomic regions from SNP 120607 to 121207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:31,944 DEBUG Processing 434/582 atomic regions from SNP 130004 to 130604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,018 DEBUG Processing 576/640 atomic regions from SNP 172559 to 173159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,137 DEBUG Processing 404/544 atomic regions from SNP 120907 to 121507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,182 DEBUG Processing 435/582 atomic regions from SNP 130304 to 130904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,232 DEBUG Processing 577/640 atomic regions from SNP 172859 to 173459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,335 DEBUG Processing 405/544 atomic regions from SNP 121207 to 121807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,407 DEBUG Processing 436/582 atomic regions from SNP 130604 to 131204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,459 DEBUG Processing 578/640 atomic regions from SNP 173159 to 173759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,531 DEBUG Processing 406/544 atomic regions from SNP 121507 to 122107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,633 DEBUG Processing 437/582 atomic regions from SNP 130904 to 131504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,670 DEBUG Processing 579/640 atomic regions from SNP 173459 to 174059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,734 DEBUG Processing 407/544 atomic regions from SNP 121807 to 122407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:32,870 DEBUG Processing 438/582 atomic regions from SNP 131204 to 131804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:32,879 DEBUG Processing 580/640 atomic regions from SNP 173759 to 174359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:32,939 DEBUG Processing 408/544 atomic regions from SNP 122107 to 122707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,092 DEBUG Processing 581/640 atomic regions from SNP 174059 to 174659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,101 DEBUG Processing 439/582 atomic regions from SNP 131504 to 132104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,145 DEBUG Processing 409/544 atomic regions from SNP 122407 to 123007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,307 DEBUG Processing 582/640 atomic regions from SNP 174359 to 174959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,310 DEBUG Processing 440/582 atomic regions from SNP 131804 to 132404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,353 DEBUG Processing 410/544 atomic regions from SNP 122707 to 123307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,521 DEBUG Processing 583/640 atomic regions from SNP 174659 to 175259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,537 DEBUG Processing 441/582 atomic regions from SNP 132104 to 132704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,564 DEBUG Processing 411/544 atomic regions from SNP 123007 to 123607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,732 DEBUG Processing 584/640 atomic regions from SNP 174959 to 175559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,766 DEBUG Processing 442/582 atomic regions from SNP 132404 to 133004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:33,773 DEBUG Processing 412/544 atomic regions from SNP 123307 to 123907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,941 DEBUG Processing 585/640 atomic regions from SNP 175259 to 175859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:33,978 DEBUG Processing 413/544 atomic regions from SNP 123607 to 124207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:33,985 DEBUG Processing 443/582 atomic regions from SNP 132704 to 133304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,157 DEBUG Processing 586/640 atomic regions from SNP 175559 to 176159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,187 DEBUG Processing 414/544 atomic regions from SNP 123907 to 124507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,199 DEBUG Processing 444/582 atomic regions from SNP 133004 to 133604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,395 DEBUG Processing 415/544 atomic regions from SNP 124207 to 124807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,402 DEBUG Processing 587/640 atomic regions from SNP 175859 to 176459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,410 DEBUG Processing 445/582 atomic regions from SNP 133304 to 133904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,600 DEBUG Processing 416/544 atomic regions from SNP 124507 to 125107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,641 DEBUG Processing 446/582 atomic regions from SNP 133604 to 134204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,652 DEBUG Processing 588/640 atomic regions from SNP 176159 to 176759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:34,805 DEBUG Processing 417/544 atomic regions from SNP 124807 to 125407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:34,871 DEBUG Processing 447/582 atomic regions from SNP 133904 to 134504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:34,900 DEBUG Processing 589/640 atomic regions from SNP 176459 to 177059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,007 DEBUG Processing 418/544 atomic regions from SNP 125107 to 125707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,099 DEBUG Processing 448/582 atomic regions from SNP 134204 to 134804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,143 DEBUG Processing 590/640 atomic regions from SNP 176759 to 177359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,209 DEBUG Processing 419/544 atomic regions from SNP 125407 to 126007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,337 DEBUG Processing 449/582 atomic regions from SNP 134504 to 135104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,380 DEBUG Processing 591/640 atomic regions from SNP 177059 to 177659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,409 DEBUG Processing 420/544 atomic regions from SNP 125707 to 126307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,559 DEBUG Processing 450/582 atomic regions from SNP 134804 to 135404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,595 DEBUG Processing 592/640 atomic regions from SNP 177359 to 177959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:35,609 DEBUG Processing 421/544 atomic regions from SNP 126007 to 126607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,788 DEBUG Processing 451/582 atomic regions from SNP 135104 to 135704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:35,810 DEBUG Processing 422/544 atomic regions from SNP 126307 to 126907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:35,822 DEBUG Processing 593/640 atomic regions from SNP 177659 to 178259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,013 DEBUG Processing 423/544 atomic regions from SNP 126607 to 127207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,022 DEBUG Processing 452/582 atomic regions from SNP 135404 to 136004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,068 DEBUG Processing 594/640 atomic regions from SNP 177959 to 178559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,213 DEBUG Processing 424/544 atomic regions from SNP 126907 to 127507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,224 DEBUG Processing 453/582 atomic regions from SNP 135704 to 136304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,302 DEBUG Processing 595/640 atomic regions from SNP 178259 to 178859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,413 DEBUG Processing 425/544 atomic regions from SNP 127207 to 127807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,426 DEBUG Processing 454/582 atomic regions from SNP 136004 to 136604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,540 DEBUG Processing 596/640 atomic regions from SNP 178559 to 179159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,615 DEBUG Processing 426/544 atomic regions from SNP 127507 to 128107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,627 DEBUG Processing 455/582 atomic regions from SNP 136304 to 136904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,749 DEBUG Processing 597/640 atomic regions from SNP 178859 to 179459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:36,816 DEBUG Processing 427/544 atomic regions from SNP 127807 to 128407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:36,856 DEBUG Processing 456/582 atomic regions from SNP 136604 to 137204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:36,962 DEBUG Processing 598/640 atomic regions from SNP 179159 to 179759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,015 DEBUG Processing 428/544 atomic regions from SNP 128107 to 128707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,089 DEBUG Processing 457/582 atomic regions from SNP 136904 to 137504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,170 DEBUG Processing 599/640 atomic regions from SNP 179459 to 180059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,214 DEBUG Processing 429/544 atomic regions from SNP 128407 to 129007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,298 DEBUG Segmenting atomic regions: 2025-01-31 09:54:37,307 DEBUG Processing 458/582 atomic regions from SNP 137204 to 137804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,369 DEBUG Processing 1/517 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,378 DEBUG Processing 600/640 atomic regions from SNP 179759 to 180359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,414 DEBUG Processing 430/544 atomic regions from SNP 128707 to 129307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,535 DEBUG Processing 459/582 atomic regions from SNP 137504 to 138104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,569 DEBUG Processing 2/517 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,618 DEBUG Processing 431/544 atomic regions from SNP 129007 to 129607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,621 DEBUG Processing 601/640 atomic regions from SNP 180059 to 180659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,737 DEBUG Processing 460/582 atomic regions from SNP 137804 to 138404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,767 DEBUG Processing 3/517 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:37,823 DEBUG Processing 432/544 atomic regions from SNP 129307 to 129907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:37,868 DEBUG Processing 602/640 atomic regions from SNP 180359 to 180959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:37,932 DEBUG Processing 461/582 atomic regions from SNP 138104 to 138704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:37,967 DEBUG Processing 4/517 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,034 DEBUG Processing 433/544 atomic regions from SNP 129607 to 130207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,122 DEBUG Processing 603/640 atomic regions from SNP 180659 to 181259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,146 DEBUG Processing 462/582 atomic regions from SNP 138404 to 139004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,174 DEBUG Processing 5/517 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,234 DEBUG Processing 434/544 atomic regions from SNP 129907 to 130507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,367 DEBUG Processing 463/582 atomic regions from SNP 138704 to 139304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,372 DEBUG Processing 6/517 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,374 DEBUG Processing 604/640 atomic regions from SNP 180959 to 181559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,429 DEBUG Processing 435/544 atomic regions from SNP 130207 to 130807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,574 DEBUG Processing 7/517 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,582 DEBUG Processing 464/582 atomic regions from SNP 139004 to 139604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,611 DEBUG Processing 605/640 atomic regions from SNP 181259 to 181859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,618 DEBUG Processing 436/544 atomic regions from SNP 130507 to 131107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,779 DEBUG Processing 8/517 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:38,790 DEBUG Processing 465/582 atomic regions from SNP 139304 to 139904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:38,826 DEBUG Processing 437/544 atomic regions from SNP 130807 to 131407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:38,831 DEBUG Processing 606/640 atomic regions from SNP 181559 to 182159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:38,977 DEBUG Processing 9/517 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,002 DEBUG Processing 466/582 atomic regions from SNP 139604 to 140204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,021 DEBUG Processing 438/544 atomic regions from SNP 131107 to 131707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,041 DEBUG Processing 607/640 atomic regions from SNP 181859 to 182459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,170 DEBUG Processing 10/517 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,206 DEBUG Processing 467/582 atomic regions from SNP 139904 to 140504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,208 DEBUG Processing 439/544 atomic regions from SNP 131407 to 132007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,247 DEBUG Processing 608/640 atomic regions from SNP 182159 to 182759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,266 DEBUG Subchromosome time: 222.39750101789832, subchromosome SNPs: 211815 2025-01-31 09:54:39,267 DEBUG Estimated BADs: [3.74, 0.62, 0.19, 0.47, 1.87, 0.27, 1.87, 0.37, 0.93, 16.82, 1.87, 0.62, 3.74, 1.87, 14.95, 5.61, 1.87, 18.68, 3.74, 1.87, 3.74, 1.87, 0.23, 0.93, 5.61, 3.74, 0.31, 0.93, 5.61] SNP counts: [6714, 9899, 4777, 5705, 9016, 6886, 13502, 13397, 7447, 187, 12292, 3433, 8911, 11993, 2018, 1946, 6481, 124, 9529, 5196, 9301, 5620, 3826, 1667, 15445, 15598, 2702, 5399, 12804] SNP IDs counts: [6714, 9899, 4777, 5705, 9016, 6886, 13502, 13397, 7447, 187, 12292, 3433, 8911, 11993, 2018, 1946, 6481, 124, 9529, 5196, 9301, 5620, 3826, 1667, 15445, 15598, 2702, 5399, 12804] Critical gap: 593288bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 6.72Mbp, 12.73Mbp, 15.98Mbp, 19.43Mbp, 24.42Mbp, 28.75Mbp, 36.35Mbp, 44.45Mbp, 48.77Mbp, 48.88Mbp, 55.64Mbp, 57.62Mbp, 62.45Mbp, 68.97Mbp, 70.02Mbp, 71.06Mbp, 74.83Mbp, 74.90Mbp, 79.96Mbp, 82.75Mbp, 87.77Mbp, 90.79Mbp, 93.19Mbp, 94.13Mbp, 102.32Mbp, 110.70Mbp, 112.24Mbp, 115.16Mbp, 122.08Mbp] 2025-01-31 09:54:39,267 DEBUG chr11 time: 222.39801020547748 s 2025-01-31 09:54:39,367 DEBUG Processing 11/517 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,393 DEBUG chr11: Fitting background model for 29 segments 2025-01-31 09:54:39,395 DEBUG Processing 440/544 atomic regions from SNP 131707 to 132307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,402 DEBUG Processing 468/582 atomic regions from SNP 140204 to 140804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,451 DEBUG Processing 609/640 atomic regions from SNP 182459 to 183059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,565 DEBUG Processing 12/517 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,582 DEBUG Processing 441/544 atomic regions from SNP 132007 to 132607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,590 DEBUG Processing 469/582 atomic regions from SNP 140504 to 141104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,658 DEBUG Processing 610/640 atomic regions from SNP 182759 to 183359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,771 DEBUG Processing 13/517 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,775 DEBUG Processing 442/544 atomic regions from SNP 132307 to 132907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,788 DEBUG Processing 470/582 atomic regions from SNP 140804 to 141404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:39,871 DEBUG Processing 611/640 atomic regions from SNP 183059 to 183659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:39,965 DEBUG Processing 14/517 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:39,966 DEBUG Processing 443/544 atomic regions from SNP 132607 to 133207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:39,982 DEBUG Processing 471/582 atomic regions from SNP 141104 to 141704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,084 DEBUG Processing 612/640 atomic regions from SNP 183359 to 183959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,160 DEBUG Processing 15/517 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,160 DEBUG Processing 444/544 atomic regions from SNP 132907 to 133507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,190 DEBUG Processing 472/582 atomic regions from SNP 141404 to 142004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,301 DEBUG Processing 613/640 atomic regions from SNP 183659 to 184259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,356 DEBUG Processing 445/544 atomic regions from SNP 133207 to 133807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,378 DEBUG Processing 16/517 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,404 DEBUG Processing 473/582 atomic regions from SNP 141704 to 142304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,519 DEBUG Processing 614/640 atomic regions from SNP 183959 to 184559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,554 DEBUG Processing 446/544 atomic regions from SNP 133507 to 134107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,580 DEBUG Processing 17/517 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,617 DEBUG Processing 474/582 atomic regions from SNP 142004 to 142604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,735 DEBUG Processing 615/640 atomic regions from SNP 184259 to 184859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,754 DEBUG Processing 447/544 atomic regions from SNP 133807 to 134407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:40,792 DEBUG Processing 18/517 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:40,820 DEBUG Processing 475/582 atomic regions from SNP 142304 to 142904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:40,945 DEBUG Processing 616/640 atomic regions from SNP 184559 to 185159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:40,951 DEBUG Processing 448/544 atomic regions from SNP 134107 to 134707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,005 DEBUG Processing 19/517 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,019 DEBUG Processing 476/582 atomic regions from SNP 142604 to 143204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,149 DEBUG Processing 449/544 atomic regions from SNP 134407 to 135007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,156 DEBUG Processing 617/640 atomic regions from SNP 184859 to 185459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,214 DEBUG Processing 20/517 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,220 DEBUG Processing 477/582 atomic regions from SNP 142904 to 143504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,341 DEBUG Processing 450/544 atomic regions from SNP 134707 to 135307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,360 DEBUG Processing 618/640 atomic regions from SNP 185159 to 185759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,414 DEBUG Processing 478/582 atomic regions from SNP 143204 to 143804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,428 DEBUG Processing 21/517 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,534 DEBUG Processing 451/544 atomic regions from SNP 135007 to 135607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,574 DEBUG Processing 619/640 atomic regions from SNP 185459 to 186059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,609 DEBUG Processing 479/582 atomic regions from SNP 143504 to 144104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,648 DEBUG Processing 22/517 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,728 DEBUG Processing 452/544 atomic regions from SNP 135307 to 135907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:41,798 DEBUG Processing 620/640 atomic regions from SNP 185759 to 186359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:41,809 DEBUG Processing 480/582 atomic regions from SNP 143804 to 144404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:41,853 DEBUG Processing 23/517 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:41,918 DEBUG Processing 453/544 atomic regions from SNP 135607 to 136207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,014 DEBUG Processing 481/582 atomic regions from SNP 144104 to 144704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,021 DEBUG Processing 621/640 atomic regions from SNP 186059 to 186659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,072 DEBUG Processing 24/517 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,118 DEBUG Processing 454/544 atomic regions from SNP 135907 to 136507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,213 DEBUG Processing 482/582 atomic regions from SNP 144404 to 145004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,237 DEBUG Processing 622/640 atomic regions from SNP 186359 to 186959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,286 DEBUG Processing 25/517 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,318 DEBUG Processing 455/544 atomic regions from SNP 136207 to 136807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,409 DEBUG Processing 483/582 atomic regions from SNP 144704 to 145304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,453 DEBUG Processing 623/640 atomic regions from SNP 186659 to 187259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,501 DEBUG Processing 26/517 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,525 DEBUG Processing 456/544 atomic regions from SNP 136507 to 137107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,609 DEBUG Processing 484/582 atomic regions from SNP 145004 to 145604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,670 DEBUG Processing 624/640 atomic regions from SNP 186959 to 187559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,713 DEBUG Processing 27/517 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,730 DEBUG Processing 457/544 atomic regions from SNP 136807 to 137407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:42,811 DEBUG Processing 485/582 atomic regions from SNP 145304 to 145904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:42,891 DEBUG Processing 625/640 atomic regions from SNP 187259 to 187859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:42,926 DEBUG Processing 28/517 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:42,929 DEBUG Processing 458/544 atomic regions from SNP 137107 to 137707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,013 DEBUG Processing 486/582 atomic regions from SNP 145604 to 146204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,113 DEBUG Processing 626/640 atomic regions from SNP 187559 to 188159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,128 DEBUG Processing 459/544 atomic regions from SNP 137407 to 138007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,134 DEBUG Processing 29/517 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,218 DEBUG Processing 487/582 atomic regions from SNP 145904 to 146504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,332 DEBUG Processing 460/544 atomic regions from SNP 137707 to 138307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,338 DEBUG Processing 627/640 atomic regions from SNP 187859 to 188459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,342 DEBUG Processing 30/517 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,428 DEBUG Processing 488/582 atomic regions from SNP 146204 to 146804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,535 DEBUG Processing 461/544 atomic regions from SNP 138007 to 138607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,552 DEBUG Processing 31/517 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,561 DEBUG Processing 628/640 atomic regions from SNP 188159 to 188759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,630 DEBUG Processing 489/582 atomic regions from SNP 146504 to 147104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,742 DEBUG Processing 462/544 atomic regions from SNP 138307 to 138907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,768 DEBUG Processing 32/517 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:43,787 DEBUG Processing 629/640 atomic regions from SNP 188459 to 189059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:43,831 DEBUG Processing 490/582 atomic regions from SNP 146804 to 147404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:43,947 DEBUG Processing 463/544 atomic regions from SNP 138607 to 139207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:43,986 DEBUG Processing 33/517 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,014 DEBUG Processing 630/640 atomic regions from SNP 188759 to 189359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,032 DEBUG Processing 491/582 atomic regions from SNP 147104 to 147704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,154 DEBUG Processing 464/544 atomic regions from SNP 138907 to 139507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,204 DEBUG Processing 34/517 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,243 DEBUG Processing 631/640 atomic regions from SNP 189059 to 189659 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,255 DEBUG Processing 492/582 atomic regions from SNP 147404 to 148004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,360 DEBUG Processing 465/544 atomic regions from SNP 139207 to 139807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,421 DEBUG Processing 35/517 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,478 DEBUG Processing 493/582 atomic regions from SNP 147704 to 148304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,490 DEBUG Processing 632/640 atomic regions from SNP 189359 to 189959 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,557 DEBUG Processing 466/544 atomic regions from SNP 139507 to 140107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,633 DEBUG Processing 36/517 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,701 DEBUG Processing 494/582 atomic regions from SNP 148004 to 148604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,729 DEBUG Processing 633/640 atomic regions from SNP 189659 to 190259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:44,753 DEBUG Processing 467/544 atomic regions from SNP 139807 to 140407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,841 DEBUG Processing 37/517 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:44,938 DEBUG Processing 495/582 atomic regions from SNP 148304 to 148904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:44,947 DEBUG Processing 468/544 atomic regions from SNP 140107 to 140707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:44,953 DEBUG Processing 634/640 atomic regions from SNP 189959 to 190559 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,046 DEBUG Processing 38/517 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,152 DEBUG Processing 469/544 atomic regions from SNP 140407 to 141007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,170 DEBUG Processing 496/582 atomic regions from SNP 148604 to 149204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,175 DEBUG Processing 635/640 atomic regions from SNP 190259 to 190859 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,247 DEBUG Processing 39/517 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,357 DEBUG Processing 470/544 atomic regions from SNP 140707 to 141307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,378 DEBUG Processing 497/582 atomic regions from SNP 148904 to 149504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,399 DEBUG Processing 636/640 atomic regions from SNP 190559 to 191159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,453 DEBUG Processing 40/517 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,566 DEBUG Processing 471/544 atomic regions from SNP 141007 to 141607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,590 DEBUG Processing 498/582 atomic regions from SNP 149204 to 149804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,623 DEBUG Processing 637/640 atomic regions from SNP 190859 to 191459 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,663 DEBUG Processing 41/517 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,771 DEBUG Processing 472/544 atomic regions from SNP 141307 to 141907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:45,799 DEBUG Processing 499/582 atomic regions from SNP 149504 to 150104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:45,849 DEBUG Processing 638/640 atomic regions from SNP 191159 to 191759 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:45,876 DEBUG Processing 42/517 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:45,972 DEBUG Processing 473/544 atomic regions from SNP 141607 to 142207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,014 DEBUG Processing 500/582 atomic regions from SNP 149804 to 150404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,072 DEBUG Processing 639/640 atomic regions from SNP 191459 to 192059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,087 DEBUG Processing 43/517 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,175 DEBUG Processing 474/544 atomic regions from SNP 141907 to 142507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,218 DEBUG Processing 501/582 atomic regions from SNP 150104 to 150704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,292 DEBUG Processing 640/640 atomic regions from SNP 191759 to 192359 for chr12 (subchromosome 1 of 1). 2025-01-31 09:54:46,302 DEBUG Processing 44/517 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,378 DEBUG Processing 475/544 atomic regions from SNP 142207 to 142807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,421 DEBUG Processing 502/582 atomic regions from SNP 150404 to 151004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,437 DEBUG Unique SNPs positions in subchromosome 1: 192360 2025-01-31 09:54:46,515 DEBUG Processing 45/517 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,582 DEBUG Processing 476/544 atomic regions from SNP 142507 to 143107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,627 DEBUG Processing 503/582 atomic regions from SNP 150704 to 151304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,720 DEBUG Processing 46/517 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,782 DEBUG Processing 477/544 atomic regions from SNP 142807 to 143407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:46,834 DEBUG Processing 504/582 atomic regions from SNP 151004 to 151604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:46,924 DEBUG Processing 47/517 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:46,981 DEBUG Processing 478/544 atomic regions from SNP 143107 to 143707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,040 DEBUG Processing 505/582 atomic regions from SNP 151304 to 151904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,130 DEBUG Processing 48/517 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,183 DEBUG Processing 479/544 atomic regions from SNP 143407 to 144007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,248 DEBUG Processing 506/582 atomic regions from SNP 151604 to 152204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,335 DEBUG Processing 49/517 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,402 DEBUG Processing 480/544 atomic regions from SNP 143707 to 144307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,453 DEBUG Processing 507/582 atomic regions from SNP 151904 to 152504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,534 DEBUG Processing 50/517 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,616 DEBUG Processing 481/544 atomic regions from SNP 144007 to 144607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,661 DEBUG Processing 508/582 atomic regions from SNP 152204 to 152804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,739 DEBUG Processing 51/517 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:47,844 DEBUG Processing 482/544 atomic regions from SNP 144307 to 144907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:47,863 DEBUG Processing 509/582 atomic regions from SNP 152504 to 153104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:47,953 DEBUG Processing 52/517 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,044 DEBUG Processing 483/544 atomic regions from SNP 144607 to 145207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,067 DEBUG Processing 510/582 atomic regions from SNP 152804 to 153404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,172 DEBUG Processing 53/517 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,243 DEBUG Processing 484/544 atomic regions from SNP 144907 to 145507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,270 DEBUG Processing 511/582 atomic regions from SNP 153104 to 153704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,397 DEBUG Processing 54/517 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,454 DEBUG Processing 485/544 atomic regions from SNP 145207 to 145807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,482 DEBUG Processing 512/582 atomic regions from SNP 153404 to 154004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,607 DEBUG Processing 55/517 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,653 DEBUG Processing 486/544 atomic regions from SNP 145507 to 146107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,685 DEBUG Processing 513/582 atomic regions from SNP 153704 to 154304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:48,833 DEBUG Processing 56/517 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:48,856 DEBUG Processing 487/544 atomic regions from SNP 145807 to 146407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:48,890 DEBUG Processing 514/582 atomic regions from SNP 154004 to 154604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,045 DEBUG Processing 57/517 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,061 DEBUG Processing 488/544 atomic regions from SNP 146107 to 146707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,100 DEBUG Processing 515/582 atomic regions from SNP 154304 to 154904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,248 DEBUG Processing 58/517 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,269 DEBUG Processing 489/544 atomic regions from SNP 146407 to 147007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,308 DEBUG Processing 516/582 atomic regions from SNP 154604 to 155204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,454 DEBUG Processing 59/517 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,473 DEBUG Processing 490/544 atomic regions from SNP 146707 to 147307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,515 DEBUG Processing 517/582 atomic regions from SNP 154904 to 155504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,666 DEBUG Processing 60/517 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,678 DEBUG Processing 491/544 atomic regions from SNP 147007 to 147607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,721 DEBUG Processing 518/582 atomic regions from SNP 155204 to 155804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:49,881 DEBUG Processing 492/544 atomic regions from SNP 147307 to 147907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:49,883 DEBUG Processing 61/517 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:49,929 DEBUG Processing 519/582 atomic regions from SNP 155504 to 156104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,096 DEBUG Processing 62/517 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,105 DEBUG Processing 493/544 atomic regions from SNP 147607 to 148207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,115 DEBUG Subchromosome time: 173.83669072389603, subchromosome SNPs: 192360 2025-01-31 09:54:50,115 DEBUG Estimated BADs: [2.89, 0.72, 1.45, 8.68, 1.45, 4.34, 0.72, 4.34, 1.45, 0.36, 2.89, 0.48, 2.89, 4.34, 1.45, 0.36, 2.89, 1.45, 7.23, 0.48, 1.45] SNP counts: [4358, 20305, 4678, 526, 12795, 2267, 29731, 1452, 13419, 6876, 1224, 5519, 25887, 7317, 8985, 9121, 13100, 8267, 5440, 2798, 8295] SNP IDs counts: [4358, 20305, 4678, 526, 12795, 2267, 29731, 1452, 13419, 6876, 1224, 5519, 25887, 7317, 8985, 9121, 13100, 8267, 5440, 2798, 8295] Critical gap: 612783bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.45Mbp, 17.49Mbp, 24.56Mbp, 24.84Mbp, 31.90Mbp, 33.14Mbp, 51.69Mbp, 52.50Mbp, 60.38Mbp, 64.96Mbp, 65.65Mbp, 69.12Mbp, 83.30Mbp, 87.16Mbp, 92.84Mbp, 98.71Mbp, 105.95Mbp, 110.37Mbp, 113.23Mbp, 115.00Mbp, 120.13Mbp] 2025-01-31 09:54:50,115 DEBUG chr12 time: 173.83724554255605 s 2025-01-31 09:54:50,152 DEBUG Processing 520/582 atomic regions from SNP 155804 to 156404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,241 DEBUG chr12: Fitting background model for 21 segments 2025-01-31 09:54:50,310 DEBUG Processing 63/517 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,327 DEBUG Processing 494/544 atomic regions from SNP 147907 to 148507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,363 DEBUG Processing 521/582 atomic regions from SNP 156104 to 156704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,520 DEBUG Processing 64/517 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,545 DEBUG Processing 495/544 atomic regions from SNP 148207 to 148807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,570 DEBUG Processing 522/582 atomic regions from SNP 156404 to 157004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,723 DEBUG Processing 65/517 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,767 DEBUG Processing 496/544 atomic regions from SNP 148507 to 149107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:50,771 DEBUG Processing 523/582 atomic regions from SNP 156704 to 157304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,930 DEBUG Processing 66/517 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:50,970 DEBUG Processing 524/582 atomic regions from SNP 157004 to 157604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:50,985 DEBUG Processing 497/544 atomic regions from SNP 148807 to 149407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,142 DEBUG Processing 67/517 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,173 DEBUG Processing 525/582 atomic regions from SNP 157304 to 157904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,187 DEBUG Processing 498/544 atomic regions from SNP 149107 to 149707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,358 DEBUG Processing 68/517 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,380 DEBUG Processing 526/582 atomic regions from SNP 157604 to 158204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,394 DEBUG Processing 499/544 atomic regions from SNP 149407 to 150007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,573 DEBUG Processing 69/517 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,584 DEBUG Processing 527/582 atomic regions from SNP 157904 to 158504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,625 DEBUG Processing 500/544 atomic regions from SNP 149707 to 150307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,789 DEBUG Processing 528/582 atomic regions from SNP 158204 to 158804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:51,792 DEBUG Processing 70/517 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:51,848 DEBUG Processing 501/544 atomic regions from SNP 150007 to 150607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:51,988 DEBUG Processing 529/582 atomic regions from SNP 158504 to 159104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,006 DEBUG Processing 71/517 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,058 DEBUG Processing 502/544 atomic regions from SNP 150307 to 150907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,181 DEBUG Processing 530/582 atomic regions from SNP 158804 to 159404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,219 DEBUG Processing 72/517 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,251 DEBUG Processing 503/544 atomic regions from SNP 150607 to 151207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,379 DEBUG Processing 531/582 atomic regions from SNP 159104 to 159704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,429 DEBUG Processing 73/517 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,469 DEBUG Processing 504/544 atomic regions from SNP 150907 to 151507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,572 DEBUG Processing 532/582 atomic regions from SNP 159404 to 160004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,642 DEBUG Processing 74/517 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,692 DEBUG Processing 505/544 atomic regions from SNP 151207 to 151807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,770 DEBUG Processing 533/582 atomic regions from SNP 159704 to 160304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:52,854 DEBUG Processing 75/517 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:52,924 DEBUG Processing 506/544 atomic regions from SNP 151507 to 152107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:52,966 DEBUG Processing 534/582 atomic regions from SNP 160004 to 160604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,068 DEBUG Processing 76/517 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,154 DEBUG Processing 507/544 atomic regions from SNP 151807 to 152407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,161 DEBUG Processing 535/582 atomic regions from SNP 160304 to 160904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,284 DEBUG Processing 77/517 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,366 DEBUG Processing 536/582 atomic regions from SNP 160604 to 161204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,374 DEBUG Processing 508/544 atomic regions from SNP 152107 to 152707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,484 DEBUG Processing 78/517 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,563 DEBUG Processing 537/582 atomic regions from SNP 160904 to 161504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,574 DEBUG Processing 509/544 atomic regions from SNP 152407 to 153007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,687 DEBUG Processing 79/517 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,765 DEBUG Processing 538/582 atomic regions from SNP 161204 to 161804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:53,802 DEBUG Processing 510/544 atomic regions from SNP 152707 to 153307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:53,896 DEBUG Processing 80/517 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:53,967 DEBUG Processing 539/582 atomic regions from SNP 161504 to 162104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,025 DEBUG Processing 511/544 atomic regions from SNP 153007 to 153607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,108 DEBUG Processing 81/517 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,165 DEBUG Processing 540/582 atomic regions from SNP 161804 to 162404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,238 DEBUG Processing 512/544 atomic regions from SNP 153307 to 153907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,325 DEBUG Processing 82/517 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,359 DEBUG Processing 541/582 atomic regions from SNP 162104 to 162704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,454 DEBUG Processing 513/544 atomic regions from SNP 153607 to 154207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,539 DEBUG Processing 83/517 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,553 DEBUG Processing 542/582 atomic regions from SNP 162404 to 163004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,667 DEBUG Processing 514/544 atomic regions from SNP 153907 to 154507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,768 DEBUG Processing 84/517 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:54,778 DEBUG Processing 543/582 atomic regions from SNP 162704 to 163304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,872 DEBUG Processing 515/544 atomic regions from SNP 154207 to 154807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:54,968 DEBUG Processing 544/582 atomic regions from SNP 163004 to 163604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:54,969 DEBUG Processing 85/517 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,063 DEBUG Processing 516/544 atomic regions from SNP 154507 to 155107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,157 DEBUG Processing 545/582 atomic regions from SNP 163304 to 163904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,160 DEBUG Processing 86/517 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,253 DEBUG Processing 517/544 atomic regions from SNP 154807 to 155407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,359 DEBUG Processing 546/582 atomic regions from SNP 163604 to 164204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,360 DEBUG Processing 87/517 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,465 DEBUG Processing 518/544 atomic regions from SNP 155107 to 155707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,556 DEBUG Processing 547/582 atomic regions from SNP 163904 to 164504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,559 DEBUG Processing 88/517 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,686 DEBUG Processing 519/544 atomic regions from SNP 155407 to 156007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,760 DEBUG Processing 89/517 atomic regions from SNP 26488 to 27088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,779 DEBUG Processing 548/582 atomic regions from SNP 164204 to 164804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:55,901 DEBUG Processing 520/544 atomic regions from SNP 155707 to 156307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:55,971 DEBUG Processing 90/517 atomic regions from SNP 26788 to 27388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:55,984 DEBUG Processing 549/582 atomic regions from SNP 164504 to 165104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,102 DEBUG Processing 521/544 atomic regions from SNP 156007 to 156607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,173 DEBUG Processing 91/517 atomic regions from SNP 27088 to 27688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,177 DEBUG Processing 550/582 atomic regions from SNP 164804 to 165404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,326 DEBUG Processing 522/544 atomic regions from SNP 156307 to 156907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,371 DEBUG Processing 92/517 atomic regions from SNP 27388 to 27988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,390 DEBUG Processing 551/582 atomic regions from SNP 165104 to 165704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,544 DEBUG Processing 523/544 atomic regions from SNP 156607 to 157207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,578 DEBUG Processing 93/517 atomic regions from SNP 27688 to 28288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,615 DEBUG Processing 552/582 atomic regions from SNP 165404 to 166004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,764 DEBUG Processing 524/544 atomic regions from SNP 156907 to 157507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,787 DEBUG Processing 94/517 atomic regions from SNP 27988 to 28588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:56,848 DEBUG Processing 553/582 atomic regions from SNP 165704 to 166304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:56,967 DEBUG Processing 525/544 atomic regions from SNP 157207 to 157807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:56,994 DEBUG Processing 95/517 atomic regions from SNP 28288 to 28888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,079 DEBUG Processing 554/582 atomic regions from SNP 166004 to 166604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,158 DEBUG Processing 526/544 atomic regions from SNP 157507 to 158107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,205 DEBUG Processing 96/517 atomic regions from SNP 28588 to 29188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,296 DEBUG Processing 555/582 atomic regions from SNP 166304 to 166904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,348 DEBUG Processing 527/544 atomic regions from SNP 157807 to 158407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,407 DEBUG Processing 97/517 atomic regions from SNP 28888 to 29488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,510 DEBUG Processing 556/582 atomic regions from SNP 166604 to 167204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,550 DEBUG Processing 528/544 atomic regions from SNP 158107 to 158707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,613 DEBUG Processing 98/517 atomic regions from SNP 29188 to 29788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,722 DEBUG Processing 557/582 atomic regions from SNP 166904 to 167504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:57,743 DEBUG Processing 529/544 atomic regions from SNP 158407 to 159007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,818 DEBUG Processing 99/517 atomic regions from SNP 29488 to 30088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:57,938 DEBUG Processing 530/544 atomic regions from SNP 158707 to 159307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:57,952 DEBUG Processing 558/582 atomic regions from SNP 167204 to 167804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,025 DEBUG Processing 100/517 atomic regions from SNP 29788 to 30388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,146 DEBUG Processing 531/544 atomic regions from SNP 159007 to 159607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,166 DEBUG Processing 559/582 atomic regions from SNP 167504 to 168104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,222 DEBUG Processing 101/517 atomic regions from SNP 30088 to 30688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,346 DEBUG Processing 532/544 atomic regions from SNP 159307 to 159907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,379 DEBUG Processing 560/582 atomic regions from SNP 167804 to 168404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,426 DEBUG Processing 102/517 atomic regions from SNP 30388 to 30988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,563 DEBUG Processing 533/544 atomic regions from SNP 159607 to 160207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,584 DEBUG Processing 561/582 atomic regions from SNP 168104 to 168704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,626 DEBUG Processing 103/517 atomic regions from SNP 30688 to 31288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,788 DEBUG Processing 534/544 atomic regions from SNP 159907 to 160507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:58,799 DEBUG Processing 562/582 atomic regions from SNP 168404 to 169004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:58,832 DEBUG Processing 104/517 atomic regions from SNP 30988 to 31588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:58,991 DEBUG Processing 535/544 atomic regions from SNP 160207 to 160807 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,030 DEBUG Processing 563/582 atomic regions from SNP 168704 to 169304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,046 DEBUG Processing 105/517 atomic regions from SNP 31288 to 31888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,191 DEBUG Processing 536/544 atomic regions from SNP 160507 to 161107 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,261 DEBUG Processing 564/582 atomic regions from SNP 169004 to 169604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,283 DEBUG Processing 106/517 atomic regions from SNP 31588 to 32188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,386 DEBUG Processing 537/544 atomic regions from SNP 160807 to 161407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,464 DEBUG Processing 565/582 atomic regions from SNP 169304 to 169904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,511 DEBUG Processing 107/517 atomic regions from SNP 31888 to 32488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,584 DEBUG Processing 538/544 atomic regions from SNP 161107 to 161707 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,660 DEBUG Processing 566/582 atomic regions from SNP 169604 to 170204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,722 DEBUG Processing 108/517 atomic regions from SNP 32188 to 32788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,788 DEBUG Processing 539/544 atomic regions from SNP 161407 to 162007 for chr16 (subchromosome 1 of 1). 2025-01-31 09:54:59,854 DEBUG Processing 567/582 atomic regions from SNP 169904 to 170504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:54:59,942 DEBUG Processing 109/517 atomic regions from SNP 32488 to 33088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:54:59,981 DEBUG Processing 540/544 atomic regions from SNP 161707 to 162307 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,069 DEBUG Processing 568/582 atomic regions from SNP 170204 to 170804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,177 DEBUG Processing 110/517 atomic regions from SNP 32788 to 33388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,182 DEBUG Processing 541/544 atomic regions from SNP 162007 to 162607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,268 DEBUG Processing 569/582 atomic regions from SNP 170504 to 171104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,390 DEBUG Processing 542/544 atomic regions from SNP 162307 to 162907 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,408 DEBUG Processing 111/517 atomic regions from SNP 33088 to 33688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,465 DEBUG Processing 570/582 atomic regions from SNP 170804 to 171404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,593 DEBUG Processing 543/544 atomic regions from SNP 162607 to 163207 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,645 DEBUG Processing 112/517 atomic regions from SNP 33388 to 33988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,663 DEBUG Processing 571/582 atomic regions from SNP 171104 to 171704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,801 DEBUG Processing 544/544 atomic regions from SNP 162907 to 163507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:55:00,858 DEBUG Processing 572/582 atomic regions from SNP 171404 to 172004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:00,880 DEBUG Processing 113/517 atomic regions from SNP 33688 to 34288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:00,946 DEBUG Unique SNPs positions in subchromosome 1: 163508 2025-01-31 09:55:01,077 DEBUG Processing 573/582 atomic regions from SNP 171704 to 172304 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,106 DEBUG Processing 114/517 atomic regions from SNP 33988 to 34588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,290 DEBUG Processing 574/582 atomic regions from SNP 172004 to 172604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,323 DEBUG Processing 115/517 atomic regions from SNP 34288 to 34888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,511 DEBUG Processing 575/582 atomic regions from SNP 172304 to 172904 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,547 DEBUG Processing 116/517 atomic regions from SNP 34588 to 35188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,726 DEBUG Processing 576/582 atomic regions from SNP 172604 to 173204 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,764 DEBUG Processing 117/517 atomic regions from SNP 34888 to 35488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:01,928 DEBUG Processing 577/582 atomic regions from SNP 172904 to 173504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:01,988 DEBUG Processing 118/517 atomic regions from SNP 35188 to 35788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,120 DEBUG Processing 578/582 atomic regions from SNP 173204 to 173804 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,215 DEBUG Processing 119/517 atomic regions from SNP 35488 to 36088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,315 DEBUG Processing 579/582 atomic regions from SNP 173504 to 174104 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,457 DEBUG Processing 120/517 atomic regions from SNP 35788 to 36388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,532 DEBUG Processing 580/582 atomic regions from SNP 173804 to 174404 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,687 DEBUG Processing 121/517 atomic regions from SNP 36088 to 36688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,752 DEBUG Processing 581/582 atomic regions from SNP 174104 to 174704 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:02,904 DEBUG Processing 122/517 atomic regions from SNP 36388 to 36988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:02,946 DEBUG Processing 582/582 atomic regions from SNP 174404 to 175004 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:03,063 DEBUG Unique SNPs positions in subchromosome 1: 175005 2025-01-31 09:55:03,110 DEBUG Processing 123/517 atomic regions from SNP 36688 to 37288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,318 DEBUG Processing 124/517 atomic regions from SNP 36988 to 37588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,530 DEBUG Processing 125/517 atomic regions from SNP 37288 to 37888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,745 DEBUG Processing 126/517 atomic regions from SNP 37588 to 38188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:03,976 DEBUG Processing 127/517 atomic regions from SNP 37888 to 38488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,207 DEBUG Processing 128/517 atomic regions from SNP 38188 to 38788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,432 DEBUG Processing 129/517 atomic regions from SNP 38488 to 39088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,638 DEBUG Processing 130/517 atomic regions from SNP 38788 to 39388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:04,878 DEBUG Processing 131/517 atomic regions from SNP 39088 to 39688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,112 DEBUG Processing 132/517 atomic regions from SNP 39388 to 39988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,338 DEBUG Processing 133/517 atomic regions from SNP 39688 to 40288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,445 DEBUG Subchromosome time: 137.13419439271092, subchromosome SNPs: 163508 2025-01-31 09:55:05,445 DEBUG Estimated BADs: [4.95, 0.55, 3.30, 1.65, 6.60, 0.33, 3.30, 0.55, 3.30, 0.82, 0.27, 11.55, 1.65, 0.33, 0.82, 1.65, 6.60, 3.30] SNP counts: [3704, 4485, 12045, 4205, 3571, 857, 6934, 9603, 18628, 23081, 4499, 441, 6410, 6336, 38737, 4358, 8850, 6764] SNP IDs counts: [3704, 4485, 12045, 4205, 3571, 857, 6934, 9603, 18628, 23081, 4499, 441, 6410, 6336, 38737, 4358, 8850, 6764] Critical gap: 539471bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 5.45Mbp, 7.92Mbp, 14.56Mbp, 17.11Mbp, 19.02Mbp, 19.61Mbp, 23.47Mbp, 29.05Mbp, 39.13Mbp, 52.84Mbp, 55.82Mbp, 56.08Mbp, 59.92Mbp, 64.19Mbp, 87.34Mbp, 89.78Mbp, 94.46Mbp, 98.21Mbp] 2025-01-31 09:55:05,445 DEBUG chr16 time: 137.13470400869846 s 2025-01-31 09:55:05,535 DEBUG chr16: Fitting background model for 18 segments 2025-01-31 09:55:05,554 DEBUG Processing 134/517 atomic regions from SNP 39988 to 40588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:05,785 DEBUG Processing 135/517 atomic regions from SNP 40288 to 40888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,014 DEBUG Processing 136/517 atomic regions from SNP 40588 to 41188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,228 DEBUG Processing 137/517 atomic regions from SNP 40888 to 41488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,441 DEBUG Processing 138/517 atomic regions from SNP 41188 to 41788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,673 DEBUG Processing 139/517 atomic regions from SNP 41488 to 42088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:06,910 DEBUG Processing 140/517 atomic regions from SNP 41788 to 42388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,131 DEBUG Processing 141/517 atomic regions from SNP 42088 to 42688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,360 DEBUG Processing 142/517 atomic regions from SNP 42388 to 42988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,600 DEBUG Processing 143/517 atomic regions from SNP 42688 to 43288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:07,818 DEBUG Processing 144/517 atomic regions from SNP 42988 to 43588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,029 DEBUG Processing 145/517 atomic regions from SNP 43288 to 43888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,236 DEBUG Processing 146/517 atomic regions from SNP 43588 to 44188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,463 DEBUG Processing 147/517 atomic regions from SNP 43888 to 44488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,657 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:55:08,667 DEBUG Processing 148/517 atomic regions from SNP 44188 to 44788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:08,872 DEBUG Processing 149/517 atomic regions from SNP 44488 to 45088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,069 DEBUG Processing 150/517 atomic regions from SNP 44788 to 45388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,267 DEBUG Processing 151/517 atomic regions from SNP 45088 to 45688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,466 DEBUG Processing 152/517 atomic regions from SNP 45388 to 45988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,671 DEBUG Processing 153/517 atomic regions from SNP 45688 to 46288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:09,874 DEBUG Processing 154/517 atomic regions from SNP 45988 to 46588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,085 DEBUG Processing 155/517 atomic regions from SNP 46288 to 46888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,300 DEBUG Processing 156/517 atomic regions from SNP 46588 to 47188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,506 DEBUG Processing 157/517 atomic regions from SNP 46888 to 47488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,708 DEBUG Processing 158/517 atomic regions from SNP 47188 to 47788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:10,912 DEBUG Processing 159/517 atomic regions from SNP 47488 to 48088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,120 DEBUG Processing 160/517 atomic regions from SNP 47788 to 48388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,341 DEBUG Processing 161/517 atomic regions from SNP 48088 to 48688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,543 DEBUG Processing 162/517 atomic regions from SNP 48388 to 48988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,755 DEBUG Processing 163/517 atomic regions from SNP 48688 to 49288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:11,972 DEBUG Processing 164/517 atomic regions from SNP 48988 to 49588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,187 DEBUG Processing 165/517 atomic regions from SNP 49288 to 49888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,400 DEBUG Processing 166/517 atomic regions from SNP 49588 to 50188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,617 DEBUG Processing 167/517 atomic regions from SNP 49888 to 50488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:12,835 DEBUG Processing 168/517 atomic regions from SNP 50188 to 50788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,078 DEBUG Processing 169/517 atomic regions from SNP 50488 to 51088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,323 DEBUG Processing 170/517 atomic regions from SNP 50788 to 51388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,564 DEBUG Processing 171/517 atomic regions from SNP 51088 to 51688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,751 DEBUG Subchromosome time: 155.53267903253436, subchromosome SNPs: 175005 2025-01-31 09:55:13,751 DEBUG Estimated BADs: [2.07, 8.26, 2.07, 0.30, 1.03, 0.34, 2.07, 0.41, 2.07, 1.03, 0.21, 0.69, 2.07, 1.03, 0.52, 2.07, 8.26, 4.13, 2.07, 6.20, 0.52, 2.07, 6.20, 0.69] SNP counts: [3360, 15414, 16288, 3534, 4508, 5075, 1205, 2970, 9644, 9888, 7498, 11684, 5125, 12607, 9323, 5185, 12108, 6376, 5487, 2009, 3875, 11843, 9189, 810] SNP IDs counts: [3360, 15414, 16288, 3534, 4508, 5075, 1205, 2970, 9644, 9888, 7498, 11684, 5125, 12607, 9323, 5185, 12108, 6376, 5487, 2009, 3875, 11843, 9189, 810] Critical gap: 553805bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.09Mbp, 13.67Mbp, 23.12Mbp, 25.47Mbp, 27.98Mbp, 31.12Mbp, 31.79Mbp, 33.63Mbp, 39.18Mbp, 44.91Mbp, 50.15Mbp, 57.11Mbp, 59.93Mbp, 67.42Mbp, 73.02Mbp, 75.88Mbp, 82.37Mbp, 85.81Mbp, 88.72Mbp, 89.81Mbp, 92.03Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:55:13,752 DEBUG chr15 time: 155.5331784002483 s 2025-01-31 09:55:13,792 DEBUG Processing 172/517 atomic regions from SNP 51388 to 51988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:13,851 DEBUG chr15: Fitting background model for 24 segments 2025-01-31 09:55:14,013 DEBUG Processing 173/517 atomic regions from SNP 51688 to 52288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,256 DEBUG Processing 174/517 atomic regions from SNP 51988 to 52588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,492 DEBUG Processing 175/517 atomic regions from SNP 52288 to 52888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,745 DEBUG Processing 176/517 atomic regions from SNP 52588 to 53188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:14,996 DEBUG Processing 177/517 atomic regions from SNP 52888 to 53488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,244 DEBUG Processing 178/517 atomic regions from SNP 53188 to 53788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,460 DEBUG Processing 179/517 atomic regions from SNP 53488 to 54088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,684 DEBUG Processing 180/517 atomic regions from SNP 53788 to 54388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:15,924 DEBUG Processing 181/517 atomic regions from SNP 54088 to 54688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,170 DEBUG Processing 182/517 atomic regions from SNP 54388 to 54988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,392 DEBUG Processing 183/517 atomic regions from SNP 54688 to 55288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,605 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:55:16,606 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:55:16,606 DEBUG Processing 184/517 atomic regions from SNP 54988 to 55588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:16,822 DEBUG Processing 185/517 atomic regions from SNP 55288 to 55888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,033 DEBUG Processing 186/517 atomic regions from SNP 55588 to 56188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,239 DEBUG Processing 187/517 atomic regions from SNP 55888 to 56488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,440 DEBUG Processing 188/517 atomic regions from SNP 56188 to 56788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,644 DEBUG Processing 189/517 atomic regions from SNP 56488 to 57088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:17,856 DEBUG Processing 190/517 atomic regions from SNP 56788 to 57388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,082 DEBUG Processing 191/517 atomic regions from SNP 57088 to 57688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,297 DEBUG Processing 192/517 atomic regions from SNP 57388 to 57988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,309 DEBUG chrY total SNP count: 110 2025-01-31 09:55:18,309 DEBUG chrY length: 91744698 2025-01-31 09:55:18,309 DEBUG ----------------------------------------- 2025-01-31 09:55:18,309 INFO Processing SNPs in chrY 2025-01-31 09:55:18,310 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 11), (11, 21), (21, 31), (31, 38), (38, 52), (52, 55), (55, 60), (60, 61), (61, 66), (66, 67), (67, 110)] 2025-01-31 09:55:18,310 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [11, 10, 10, 7, 14, 3, 5, 1, 5, 1, 43] SNP IDs counts: [11, 10, 10, 7, 14, 3, 5, 1, 5, 1, 43] Critical gap: 15868bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.84Mbp], 0.85Mbp[0.10Mbp], 0.96Mbp[0.34Mbp], 1.30Mbp[2.71Mbp], 4.01Mbp[1.30Mbp], 5.32Mbp[5.39Mbp], 10.71Mbp[9.96Mbp], 20.67Mbp[2.05Mbp], 22.72Mbp[21.20Mbp], 43.93Mbp[42.81Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:55:18,310 DEBUG chrY time: 0.0013956092298030853 s 2025-01-31 09:55:18,509 DEBUG Processing 193/517 atomic regions from SNP 57688 to 58288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,720 DEBUG Processing 194/517 atomic regions from SNP 57988 to 58588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:18,929 DEBUG Processing 195/517 atomic regions from SNP 58288 to 58888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,135 DEBUG Processing 196/517 atomic regions from SNP 58588 to 59188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,341 DEBUG Processing 197/517 atomic regions from SNP 58888 to 59488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,544 DEBUG Processing 198/517 atomic regions from SNP 59188 to 59788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,754 DEBUG Processing 199/517 atomic regions from SNP 59488 to 60088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:19,959 DEBUG Processing 200/517 atomic regions from SNP 59788 to 60388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,164 DEBUG Processing 201/517 atomic regions from SNP 60088 to 60688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,167 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:55:20,371 DEBUG Processing 202/517 atomic regions from SNP 60388 to 60988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,524 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:55:20,573 DEBUG Processing 203/517 atomic regions from SNP 60688 to 61288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,785 DEBUG Processing 204/517 atomic regions from SNP 60988 to 61588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:20,992 DEBUG Processing 205/517 atomic regions from SNP 61288 to 61888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,203 DEBUG Processing 206/517 atomic regions from SNP 61588 to 62188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,405 DEBUG Processing 207/517 atomic regions from SNP 61888 to 62488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,604 DEBUG Processing 208/517 atomic regions from SNP 62188 to 62788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:21,814 DEBUG Processing 209/517 atomic regions from SNP 62488 to 63088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,028 DEBUG Processing 210/517 atomic regions from SNP 62788 to 63388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,236 DEBUG Processing 211/517 atomic regions from SNP 63088 to 63688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,452 DEBUG Processing 212/517 atomic regions from SNP 63388 to 63988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,683 DEBUG Processing 213/517 atomic regions from SNP 63688 to 64288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:22,903 DEBUG Processing 214/517 atomic regions from SNP 63988 to 64588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,115 DEBUG Processing 215/517 atomic regions from SNP 64288 to 64888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,331 DEBUG Processing 216/517 atomic regions from SNP 64588 to 65188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,540 DEBUG Processing 217/517 atomic regions from SNP 64888 to 65488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,751 DEBUG Processing 218/517 atomic regions from SNP 65188 to 65788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:23,966 DEBUG Processing 219/517 atomic regions from SNP 65488 to 66088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,177 DEBUG Processing 220/517 atomic regions from SNP 65788 to 66388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,394 DEBUG Processing 221/517 atomic regions from SNP 66088 to 66688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,609 DEBUG Processing 222/517 atomic regions from SNP 66388 to 66988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:24,821 DEBUG Processing 223/517 atomic regions from SNP 66688 to 67288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,022 DEBUG Processing 224/517 atomic regions from SNP 66988 to 67588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,232 DEBUG Processing 225/517 atomic regions from SNP 67288 to 67888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,444 DEBUG Processing 226/517 atomic regions from SNP 67588 to 68188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,657 DEBUG Processing 227/517 atomic regions from SNP 67888 to 68488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:25,865 DEBUG Processing 228/517 atomic regions from SNP 68188 to 68788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,075 DEBUG Processing 229/517 atomic regions from SNP 68488 to 69088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,283 DEBUG Processing 230/517 atomic regions from SNP 68788 to 69388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,487 DEBUG Processing 231/517 atomic regions from SNP 69088 to 69688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,702 DEBUG Processing 232/517 atomic regions from SNP 69388 to 69988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:26,950 DEBUG Processing 233/517 atomic regions from SNP 69688 to 70288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,180 DEBUG Processing 234/517 atomic regions from SNP 69988 to 70588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,393 DEBUG Processing 235/517 atomic regions from SNP 70288 to 70888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,632 DEBUG Processing 236/517 atomic regions from SNP 70588 to 71188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:27,857 DEBUG Processing 237/517 atomic regions from SNP 70888 to 71488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,063 DEBUG Processing 238/517 atomic regions from SNP 71188 to 71788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,276 DEBUG Processing 239/517 atomic regions from SNP 71488 to 72088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,513 DEBUG Processing 240/517 atomic regions from SNP 71788 to 72388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,720 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:55:28,722 DEBUG chr19: Signal quantile: 0.988. signal threshold: 13. Best RMSEA: 0.015 2025-01-31 09:55:28,755 DEBUG Processing 241/517 atomic regions from SNP 72088 to 72688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:28,964 DEBUG Processing 242/517 atomic regions from SNP 72388 to 72988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,172 DEBUG Processing 243/517 atomic regions from SNP 72688 to 73288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,385 DEBUG Processing 244/517 atomic regions from SNP 72988 to 73588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,634 DEBUG Processing 245/517 atomic regions from SNP 73288 to 73888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,863 DEBUG chr19 total SNP count: 102688 2025-01-31 09:55:29,863 DEBUG chr19 length: 61431566 2025-01-31 09:55:29,863 DEBUG ----------------------------------------- 2025-01-31 09:55:29,863 INFO Processing SNPs in chr19 2025-01-31 09:55:29,884 DEBUG Processing 246/517 atomic regions from SNP 73588 to 74188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:29,967 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 102688)] 2025-01-31 09:55:30,037 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:30,129 DEBUG Processing 247/517 atomic regions from SNP 73888 to 74488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,315 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:55:30,316 DEBUG chr18: Signal quantile: 0.993. signal threshold: 11. Best RMSEA: 0.021 2025-01-31 09:55:30,380 DEBUG Processing 248/517 atomic regions from SNP 74188 to 74788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,609 DEBUG Processing 249/517 atomic regions from SNP 74488 to 75088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:30,837 DEBUG Processing 250/517 atomic regions from SNP 74788 to 75388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,065 DEBUG Processing 251/517 atomic regions from SNP 75088 to 75688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,308 DEBUG Processing 252/517 atomic regions from SNP 75388 to 75988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,533 DEBUG Processing 253/517 atomic regions from SNP 75688 to 76288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,750 DEBUG Processing 254/517 atomic regions from SNP 75988 to 76588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:31,961 DEBUG Processing 255/517 atomic regions from SNP 76288 to 76888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,076 DEBUG chr18 total SNP count: 151227 2025-01-31 09:55:32,076 DEBUG chr18 length: 90702639 2025-01-31 09:55:32,076 DEBUG ----------------------------------------- 2025-01-31 09:55:32,076 INFO Processing SNPs in chr18 2025-01-31 09:55:32,167 DEBUG Processing 256/517 atomic regions from SNP 76588 to 77188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,236 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 151227)] 2025-01-31 09:55:32,345 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:32,376 DEBUG Processing 257/517 atomic regions from SNP 76888 to 77488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,596 DEBUG Processing 258/517 atomic regions from SNP 77188 to 77788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:32,823 DEBUG Processing 259/517 atomic regions from SNP 77488 to 78088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,056 DEBUG Processing 260/517 atomic regions from SNP 77788 to 78388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,316 DEBUG Processing 261/517 atomic regions from SNP 78088 to 78688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,594 DEBUG Processing 262/517 atomic regions from SNP 78388 to 78988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:33,966 DEBUG Processing 263/517 atomic regions from SNP 78688 to 79288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,292 DEBUG Processing 264/517 atomic regions from SNP 78988 to 79588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,528 DEBUG Processing 265/517 atomic regions from SNP 79288 to 79888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,749 DEBUG Processing 266/517 atomic regions from SNP 79588 to 80188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:34,963 DEBUG Processing 267/517 atomic regions from SNP 79888 to 80488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,178 DEBUG Processing 268/517 atomic regions from SNP 80188 to 80788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,394 DEBUG Processing 269/517 atomic regions from SNP 80488 to 81088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,613 DEBUG Processing 270/517 atomic regions from SNP 80788 to 81388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:35,843 DEBUG Processing 271/517 atomic regions from SNP 81088 to 81688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,056 DEBUG Processing 272/517 atomic regions from SNP 81388 to 81988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,282 DEBUG Processing 273/517 atomic regions from SNP 81688 to 82288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,511 DEBUG Processing 274/517 atomic regions from SNP 81988 to 82588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,721 DEBUG Processing 275/517 atomic regions from SNP 82288 to 82888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:36,922 DEBUG Processing 276/517 atomic regions from SNP 82588 to 83188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,145 DEBUG Processing 277/517 atomic regions from SNP 82888 to 83488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,360 DEBUG Processing 278/517 atomic regions from SNP 83188 to 83788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,581 DEBUG Processing 279/517 atomic regions from SNP 83488 to 84088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:37,819 DEBUG Processing 280/517 atomic regions from SNP 83788 to 84388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,042 DEBUG Processing 281/517 atomic regions from SNP 84088 to 84688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,267 DEBUG Processing 282/517 atomic regions from SNP 84388 to 84988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,499 DEBUG Processing 283/517 atomic regions from SNP 84688 to 85288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:38,747 DEBUG Processing 284/517 atomic regions from SNP 84988 to 85588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,000 DEBUG Processing 285/517 atomic regions from SNP 85288 to 85888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,274 DEBUG Processing 286/517 atomic regions from SNP 85588 to 86188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,542 DEBUG Processing 287/517 atomic regions from SNP 85888 to 86488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:39,843 DEBUG Processing 288/517 atomic regions from SNP 86188 to 86788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,064 DEBUG Processing 289/517 atomic regions from SNP 86488 to 87088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,293 DEBUG Processing 290/517 atomic regions from SNP 86788 to 87388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,519 DEBUG Processing 291/517 atomic regions from SNP 87088 to 87688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,735 DEBUG Processing 292/517 atomic regions from SNP 87388 to 87988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:40,995 DEBUG Processing 293/517 atomic regions from SNP 87688 to 88288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,293 DEBUG Processing 294/517 atomic regions from SNP 87988 to 88588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,550 DEBUG Processing 295/517 atomic regions from SNP 88288 to 88888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:41,817 DEBUG Processing 296/517 atomic regions from SNP 88588 to 89188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,078 DEBUG Processing 297/517 atomic regions from SNP 88888 to 89488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,414 DEBUG Processing 298/517 atomic regions from SNP 89188 to 89788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,713 DEBUG Processing 299/517 atomic regions from SNP 89488 to 90088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:42,829 DEBUG Segmenting atomic regions: 2025-01-31 09:55:42,876 DEBUG Processing 1/341 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:43,033 DEBUG Processing 300/517 atomic regions from SNP 89788 to 90388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,130 DEBUG Processing 2/341 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:43,363 DEBUG Processing 301/517 atomic regions from SNP 90088 to 90688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,407 DEBUG Processing 3/341 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:43,644 DEBUG Processing 4/341 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:43,649 DEBUG Processing 302/517 atomic regions from SNP 90388 to 90988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:43,861 DEBUG Processing 5/341 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:43,893 DEBUG Processing 303/517 atomic regions from SNP 90688 to 91288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,150 DEBUG Processing 6/341 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:44,199 DEBUG Processing 304/517 atomic regions from SNP 90988 to 91588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,421 DEBUG Processing 7/341 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:44,480 DEBUG Processing 305/517 atomic regions from SNP 91288 to 91888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,636 DEBUG Processing 8/341 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:44,731 DEBUG Processing 306/517 atomic regions from SNP 91588 to 92188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:44,865 DEBUG Processing 9/341 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:45,004 DEBUG Processing 307/517 atomic regions from SNP 91888 to 92488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,127 DEBUG Processing 10/341 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:45,255 DEBUG Processing 308/517 atomic regions from SNP 92188 to 92788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,394 DEBUG Processing 11/341 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:45,570 DEBUG Processing 309/517 atomic regions from SNP 92488 to 93088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,611 DEBUG Processing 12/341 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:45,878 DEBUG Processing 310/517 atomic regions from SNP 92788 to 93388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:45,912 DEBUG Processing 13/341 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:46,160 DEBUG Processing 311/517 atomic regions from SNP 93088 to 93688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,195 DEBUG Processing 14/341 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:46,457 DEBUG Processing 312/517 atomic regions from SNP 93388 to 93988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,471 DEBUG Processing 15/341 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:46,724 DEBUG Processing 16/341 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:46,730 DEBUG Processing 313/517 atomic regions from SNP 93688 to 94288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:46,973 DEBUG Processing 17/341 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:47,000 DEBUG Processing 314/517 atomic regions from SNP 93988 to 94588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,234 DEBUG Processing 18/341 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:47,270 DEBUG Processing 315/517 atomic regions from SNP 94288 to 94888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,487 DEBUG Processing 19/341 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:47,531 DEBUG Processing 316/517 atomic regions from SNP 94588 to 95188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:47,742 DEBUG Processing 20/341 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:47,789 DEBUG Processing 317/517 atomic regions from SNP 94888 to 95488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,022 DEBUG Processing 21/341 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:48,058 DEBUG Processing 318/517 atomic regions from SNP 95188 to 95788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,241 DEBUG Processing 22/341 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:48,316 DEBUG Processing 319/517 atomic regions from SNP 95488 to 96088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,446 DEBUG Processing 23/341 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:48,619 DEBUG Processing 320/517 atomic regions from SNP 95788 to 96388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,727 DEBUG Processing 24/341 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:48,894 DEBUG Processing 321/517 atomic regions from SNP 96088 to 96688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:48,988 DEBUG Processing 25/341 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:49,199 DEBUG Processing 322/517 atomic regions from SNP 96388 to 96988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,284 DEBUG Processing 26/341 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:49,507 DEBUG Processing 323/517 atomic regions from SNP 96688 to 97288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,545 DEBUG Processing 27/341 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:49,801 DEBUG Processing 324/517 atomic regions from SNP 96988 to 97588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:49,841 DEBUG Processing 28/341 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:50,033 DEBUG Processing 325/517 atomic regions from SNP 97288 to 97888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,108 DEBUG Processing 29/341 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:50,277 DEBUG Processing 326/517 atomic regions from SNP 97588 to 98188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,318 DEBUG Processing 30/341 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:50,483 DEBUG Processing 31/341 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:50,495 DEBUG Processing 327/517 atomic regions from SNP 97888 to 98488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,661 DEBUG Processing 32/341 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:50,718 DEBUG Processing 328/517 atomic regions from SNP 98188 to 98788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:50,859 DEBUG Processing 33/341 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:50,938 DEBUG Processing 329/517 atomic regions from SNP 98488 to 99088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,074 DEBUG Processing 34/341 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:51,160 DEBUG Processing 330/517 atomic regions from SNP 98788 to 99388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,287 DEBUG Processing 35/341 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:51,383 DEBUG Processing 331/517 atomic regions from SNP 99088 to 99688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,458 DEBUG Segmenting atomic regions: 2025-01-31 09:55:51,470 DEBUG Processing 36/341 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:51,528 DEBUG Processing 1/503 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:51,594 DEBUG Processing 332/517 atomic regions from SNP 99388 to 99988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,649 DEBUG Processing 37/341 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:51,733 DEBUG Processing 2/503 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:51,809 DEBUG Processing 333/517 atomic regions from SNP 99688 to 100288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:51,823 DEBUG Processing 38/341 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:51,947 DEBUG Processing 3/503 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:52,021 DEBUG Processing 39/341 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:52,029 DEBUG Processing 334/517 atomic regions from SNP 99988 to 100588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,167 DEBUG Processing 4/503 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:52,237 DEBUG Processing 40/341 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:52,280 DEBUG Processing 335/517 atomic regions from SNP 100288 to 100888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,384 DEBUG Processing 5/503 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:52,470 DEBUG Processing 41/341 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:52,523 DEBUG Processing 336/517 atomic regions from SNP 100588 to 101188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,600 DEBUG Processing 6/503 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:52,678 DEBUG Processing 42/341 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:52,796 DEBUG Processing 337/517 atomic regions from SNP 100888 to 101488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:52,849 DEBUG Processing 7/503 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:52,888 DEBUG Processing 43/341 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:53,066 DEBUG Processing 338/517 atomic regions from SNP 101188 to 101788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,088 DEBUG Processing 44/341 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:53,096 DEBUG Processing 8/503 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:53,340 DEBUG Processing 339/517 atomic regions from SNP 101488 to 102088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,341 DEBUG Processing 45/341 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:53,369 DEBUG Processing 9/503 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:53,622 DEBUG Processing 46/341 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:53,670 DEBUG Processing 340/517 atomic regions from SNP 101788 to 102388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,695 DEBUG Processing 10/503 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:53,816 DEBUG Processing 47/341 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:53,928 DEBUG Processing 341/517 atomic regions from SNP 102088 to 102688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:53,954 DEBUG Processing 11/503 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:54,044 DEBUG Processing 48/341 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:54,172 DEBUG Processing 342/517 atomic regions from SNP 102388 to 102988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,196 DEBUG Processing 12/503 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:54,236 DEBUG Processing 49/341 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:54,408 DEBUG Processing 343/517 atomic regions from SNP 102688 to 103288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,408 DEBUG Processing 50/341 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:54,410 DEBUG Processing 13/503 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:54,609 DEBUG Processing 51/341 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:54,635 DEBUG Processing 344/517 atomic regions from SNP 102988 to 103588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,648 DEBUG Processing 14/503 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:54,799 DEBUG Processing 52/341 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:54,868 DEBUG Processing 345/517 atomic regions from SNP 103288 to 103888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:54,870 DEBUG Processing 15/503 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:54,967 DEBUG Processing 53/341 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:55,087 DEBUG Processing 16/503 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:55,095 DEBUG Processing 346/517 atomic regions from SNP 103588 to 104188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,140 DEBUG Processing 54/341 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:55,291 DEBUG Processing 17/503 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:55,314 DEBUG Processing 55/341 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:55,321 DEBUG Processing 347/517 atomic regions from SNP 103888 to 104488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,488 DEBUG Processing 56/341 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:55,497 DEBUG Processing 18/503 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:55,544 DEBUG Processing 348/517 atomic regions from SNP 104188 to 104788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,673 DEBUG Processing 57/341 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:55,718 DEBUG Processing 19/503 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:55,770 DEBUG Processing 349/517 atomic regions from SNP 104488 to 105088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:55,851 DEBUG Processing 58/341 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:55,943 DEBUG Processing 20/503 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:56,018 DEBUG Processing 350/517 atomic regions from SNP 104788 to 105388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,022 DEBUG Processing 59/341 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:56,166 DEBUG Processing 21/503 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:56,202 DEBUG Processing 60/341 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:56,262 DEBUG Processing 351/517 atomic regions from SNP 105088 to 105688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,386 DEBUG Processing 22/503 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:56,396 DEBUG Processing 61/341 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:56,526 DEBUG Processing 352/517 atomic regions from SNP 105388 to 105988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,624 DEBUG Processing 62/341 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:56,657 DEBUG Processing 23/503 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:56,756 DEBUG Processing 353/517 atomic regions from SNP 105688 to 106288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:56,783 DEBUG Processing 63/341 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:56,863 DEBUG Processing 24/503 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:56,955 DEBUG Processing 64/341 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:56,983 DEBUG Processing 354/517 atomic regions from SNP 105988 to 106588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,067 DEBUG Processing 25/503 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:57,143 DEBUG Processing 65/341 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:57,214 DEBUG Processing 355/517 atomic regions from SNP 106288 to 106888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,276 DEBUG Processing 26/503 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:57,315 DEBUG Processing 66/341 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:57,443 DEBUG Processing 356/517 atomic regions from SNP 106588 to 107188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,483 DEBUG Processing 27/503 atomic regions from SNP 7826 to 8426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:57,484 DEBUG Processing 67/341 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:57,657 DEBUG Processing 68/341 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:57,677 DEBUG Processing 357/517 atomic regions from SNP 106888 to 107488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:57,695 DEBUG Processing 28/503 atomic regions from SNP 8126 to 8726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:57,834 DEBUG Processing 69/341 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:57,912 DEBUG Processing 29/503 atomic regions from SNP 8426 to 9026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:57,914 DEBUG Processing 358/517 atomic regions from SNP 107188 to 107788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,007 DEBUG Processing 70/341 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:58,128 DEBUG Processing 30/503 atomic regions from SNP 8726 to 9326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:58,146 DEBUG Processing 359/517 atomic regions from SNP 107488 to 108088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,187 DEBUG Processing 71/341 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:58,338 DEBUG Processing 31/503 atomic regions from SNP 9026 to 9626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:58,358 DEBUG Processing 72/341 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:58,369 DEBUG Processing 360/517 atomic regions from SNP 107788 to 108388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,530 DEBUG Processing 73/341 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:58,553 DEBUG Processing 32/503 atomic regions from SNP 9326 to 9926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:58,596 DEBUG Processing 361/517 atomic regions from SNP 108088 to 108688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,702 DEBUG Processing 74/341 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:58,766 DEBUG Processing 33/503 atomic regions from SNP 9626 to 10226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:58,824 DEBUG Processing 362/517 atomic regions from SNP 108388 to 108988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:58,876 DEBUG Processing 75/341 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:58,984 DEBUG Processing 34/503 atomic regions from SNP 9926 to 10526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:59,055 DEBUG Processing 76/341 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:59,060 DEBUG Processing 363/517 atomic regions from SNP 108688 to 109288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,196 DEBUG Processing 35/503 atomic regions from SNP 10226 to 10826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:59,251 DEBUG Processing 77/341 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:59,308 DEBUG Processing 364/517 atomic regions from SNP 108988 to 109588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,408 DEBUG Processing 36/503 atomic regions from SNP 10526 to 11126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:59,463 DEBUG Processing 78/341 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:59,581 DEBUG Processing 365/517 atomic regions from SNP 109288 to 109888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,667 DEBUG Processing 79/341 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:59,670 DEBUG Processing 37/503 atomic regions from SNP 10826 to 11426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:55:59,875 DEBUG Processing 366/517 atomic regions from SNP 109588 to 110188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:55:59,897 DEBUG Processing 80/341 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:55:59,942 DEBUG Processing 38/503 atomic regions from SNP 11126 to 11726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:00,112 DEBUG Processing 81/341 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:00,141 DEBUG Processing 367/517 atomic regions from SNP 109888 to 110488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,186 DEBUG Processing 39/503 atomic regions from SNP 11426 to 12026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:00,293 DEBUG Processing 82/341 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:00,372 DEBUG Processing 368/517 atomic regions from SNP 110188 to 110788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,412 DEBUG Processing 40/503 atomic regions from SNP 11726 to 12326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:00,467 DEBUG Processing 83/341 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:00,612 DEBUG Processing 369/517 atomic regions from SNP 110488 to 111088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,626 DEBUG Processing 41/503 atomic regions from SNP 12026 to 12626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:00,643 DEBUG Processing 84/341 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:00,828 DEBUG Processing 85/341 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:00,854 DEBUG Processing 370/517 atomic regions from SNP 110788 to 111388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:00,855 DEBUG Processing 42/503 atomic regions from SNP 12326 to 12926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:01,007 DEBUG Processing 86/341 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:01,092 DEBUG Processing 43/503 atomic regions from SNP 12626 to 13226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:01,098 DEBUG Processing 371/517 atomic regions from SNP 111088 to 111688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,178 DEBUG Processing 87/341 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:01,323 DEBUG Processing 44/503 atomic regions from SNP 12926 to 13526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:01,344 DEBUG Processing 372/517 atomic regions from SNP 111388 to 111988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,358 DEBUG Processing 88/341 atomic regions from SNP 26187 to 26787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:01,574 DEBUG Processing 45/503 atomic regions from SNP 13226 to 13826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:01,593 DEBUG Processing 89/341 atomic regions from SNP 26487 to 27087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:01,631 DEBUG Processing 373/517 atomic regions from SNP 111688 to 112288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:01,823 DEBUG Processing 46/503 atomic regions from SNP 13526 to 14126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:01,848 DEBUG Processing 90/341 atomic regions from SNP 26787 to 27387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:01,923 DEBUG Processing 374/517 atomic regions from SNP 111988 to 112588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,119 DEBUG Processing 47/503 atomic regions from SNP 13826 to 14426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:02,137 DEBUG Processing 91/341 atomic regions from SNP 27087 to 27687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:02,251 DEBUG Processing 375/517 atomic regions from SNP 112288 to 112888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,428 DEBUG Processing 48/503 atomic regions from SNP 14126 to 14726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:02,432 DEBUG Processing 92/341 atomic regions from SNP 27387 to 27987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:02,580 DEBUG Processing 376/517 atomic regions from SNP 112588 to 113188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:02,736 DEBUG Processing 93/341 atomic regions from SNP 27687 to 28287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:02,768 DEBUG Processing 49/503 atomic regions from SNP 14426 to 15026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:02,935 DEBUG Processing 377/517 atomic regions from SNP 112888 to 113488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,091 DEBUG Processing 94/341 atomic regions from SNP 27987 to 28587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:03,127 DEBUG Processing 50/503 atomic regions from SNP 14726 to 15326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:03,315 DEBUG Processing 378/517 atomic regions from SNP 113188 to 113788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,433 DEBUG Processing 95/341 atomic regions from SNP 28287 to 28887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:03,493 DEBUG Processing 51/503 atomic regions from SNP 15026 to 15626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:03,653 DEBUG Processing 379/517 atomic regions from SNP 113488 to 114088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:03,772 DEBUG Processing 96/341 atomic regions from SNP 28587 to 29187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:03,850 DEBUG Processing 52/503 atomic regions from SNP 15326 to 15926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:04,012 DEBUG Processing 380/517 atomic regions from SNP 113788 to 114388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,110 DEBUG Processing 97/341 atomic regions from SNP 28887 to 29487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:04,221 DEBUG Processing 53/503 atomic regions from SNP 15626 to 16226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:04,398 DEBUG Processing 381/517 atomic regions from SNP 114088 to 114688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,428 DEBUG Processing 98/341 atomic regions from SNP 29187 to 29787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:04,574 DEBUG Processing 54/503 atomic regions from SNP 15926 to 16526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:04,772 DEBUG Processing 99/341 atomic regions from SNP 29487 to 30087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:04,810 DEBUG Processing 382/517 atomic regions from SNP 114388 to 114988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:04,941 DEBUG Processing 55/503 atomic regions from SNP 16226 to 16826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:05,089 DEBUG Processing 100/341 atomic regions from SNP 29787 to 30387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:05,167 DEBUG Processing 383/517 atomic regions from SNP 114688 to 115288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,207 DEBUG Processing 56/503 atomic regions from SNP 16526 to 17126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:05,330 DEBUG Processing 101/341 atomic regions from SNP 30087 to 30687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:05,499 DEBUG Processing 384/517 atomic regions from SNP 114988 to 115588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,541 DEBUG Processing 57/503 atomic regions from SNP 16826 to 17426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:05,589 DEBUG Processing 102/341 atomic regions from SNP 30387 to 30987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:05,857 DEBUG Processing 385/517 atomic regions from SNP 115288 to 115888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:05,863 DEBUG Processing 58/503 atomic regions from SNP 17126 to 17726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:05,929 DEBUG Processing 103/341 atomic regions from SNP 30687 to 31287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:06,217 DEBUG Processing 59/503 atomic regions from SNP 17426 to 18026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:06,221 DEBUG Processing 386/517 atomic regions from SNP 115588 to 116188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,258 DEBUG Processing 104/341 atomic regions from SNP 30987 to 31587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:06,586 DEBUG Processing 60/503 atomic regions from SNP 17726 to 18326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:06,599 DEBUG Processing 105/341 atomic regions from SNP 31287 to 31887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:06,602 DEBUG Processing 387/517 atomic regions from SNP 115888 to 116488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:06,920 DEBUG Processing 61/503 atomic regions from SNP 18026 to 18626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:06,924 DEBUG Processing 106/341 atomic regions from SNP 31587 to 32187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:06,959 DEBUG Processing 388/517 atomic regions from SNP 116188 to 116788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,240 DEBUG Processing 107/341 atomic regions from SNP 31887 to 32487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:07,260 DEBUG Processing 62/503 atomic regions from SNP 18326 to 18926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:07,280 DEBUG Processing 389/517 atomic regions from SNP 116488 to 117088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,505 DEBUG Processing 108/341 atomic regions from SNP 32187 to 32787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:07,557 DEBUG Processing 63/503 atomic regions from SNP 18626 to 19226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:07,586 DEBUG Processing 390/517 atomic regions from SNP 116788 to 117388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:07,772 DEBUG Processing 109/341 atomic regions from SNP 32487 to 33087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:07,858 DEBUG Processing 64/503 atomic regions from SNP 18926 to 19526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:07,914 DEBUG Processing 391/517 atomic regions from SNP 117088 to 117688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,071 DEBUG Processing 110/341 atomic regions from SNP 32787 to 33387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:08,221 DEBUG Processing 65/503 atomic regions from SNP 19226 to 19826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:08,289 DEBUG Processing 392/517 atomic regions from SNP 117388 to 117988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,441 DEBUG Processing 111/341 atomic regions from SNP 33087 to 33687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:08,603 DEBUG Processing 66/503 atomic regions from SNP 19526 to 20126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:08,708 DEBUG Processing 393/517 atomic regions from SNP 117688 to 118288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:08,796 DEBUG Processing 112/341 atomic regions from SNP 33387 to 33987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:08,974 DEBUG Processing 67/503 atomic regions from SNP 19826 to 20426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:09,110 DEBUG Processing 394/517 atomic regions from SNP 117988 to 118588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,137 DEBUG Processing 113/341 atomic regions from SNP 33687 to 34287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:09,321 DEBUG Processing 68/503 atomic regions from SNP 20126 to 20726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:09,412 DEBUG Processing 395/517 atomic regions from SNP 118288 to 118888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,413 DEBUG Processing 114/341 atomic regions from SNP 33987 to 34587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:09,612 DEBUG Processing 69/503 atomic regions from SNP 20426 to 21026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:09,717 DEBUG Processing 115/341 atomic regions from SNP 34287 to 34887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:09,725 DEBUG Processing 396/517 atomic regions from SNP 118588 to 119188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:09,927 DEBUG Processing 70/503 atomic regions from SNP 20726 to 21326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:10,017 DEBUG Processing 116/341 atomic regions from SNP 34587 to 35187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:10,054 DEBUG Processing 397/517 atomic regions from SNP 118888 to 119488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,246 DEBUG Processing 71/503 atomic regions from SNP 21026 to 21626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:10,318 DEBUG Processing 117/341 atomic regions from SNP 34887 to 35487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:10,396 DEBUG Processing 398/517 atomic regions from SNP 119188 to 119788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,597 DEBUG Processing 72/503 atomic regions from SNP 21326 to 21926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:10,630 DEBUG Processing 118/341 atomic regions from SNP 35187 to 35787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:10,732 DEBUG Processing 399/517 atomic regions from SNP 119488 to 120088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:10,916 DEBUG Processing 73/503 atomic regions from SNP 21626 to 22226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:10,931 DEBUG Processing 119/341 atomic regions from SNP 35487 to 36087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:11,087 DEBUG Processing 400/517 atomic regions from SNP 119788 to 120388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,180 DEBUG Processing 120/341 atomic regions from SNP 35787 to 36387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:11,201 DEBUG Processing 74/503 atomic regions from SNP 21926 to 22526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:11,389 DEBUG Processing 401/517 atomic regions from SNP 120088 to 120688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,474 DEBUG Processing 121/341 atomic regions from SNP 36087 to 36687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:11,534 DEBUG Processing 75/503 atomic regions from SNP 22226 to 22826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:11,719 DEBUG Processing 402/517 atomic regions from SNP 120388 to 120988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:11,850 DEBUG Processing 122/341 atomic regions from SNP 36387 to 36987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:11,875 DEBUG Processing 76/503 atomic regions from SNP 22526 to 23126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:12,094 DEBUG Processing 403/517 atomic regions from SNP 120688 to 121288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,192 DEBUG Processing 123/341 atomic regions from SNP 36687 to 37287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:12,213 DEBUG Processing 77/503 atomic regions from SNP 22826 to 23426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:12,437 DEBUG Processing 404/517 atomic regions from SNP 120988 to 121588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,495 DEBUG Processing 124/341 atomic regions from SNP 36987 to 37587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:12,501 DEBUG Processing 78/503 atomic regions from SNP 23126 to 23726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:12,750 DEBUG Processing 405/517 atomic regions from SNP 121288 to 121888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:12,822 DEBUG Processing 125/341 atomic regions from SNP 37287 to 37887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:12,845 DEBUG Processing 79/503 atomic regions from SNP 23426 to 24026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:13,105 DEBUG Processing 406/517 atomic regions from SNP 121588 to 122188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,124 DEBUG Processing 126/341 atomic regions from SNP 37587 to 38187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:13,201 DEBUG Processing 80/503 atomic regions from SNP 23726 to 24326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:13,420 DEBUG Processing 127/341 atomic regions from SNP 37887 to 38487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:13,440 DEBUG Processing 407/517 atomic regions from SNP 121888 to 122488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,524 DEBUG Processing 81/503 atomic regions from SNP 24026 to 24626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:13,731 DEBUG Processing 128/341 atomic regions from SNP 38187 to 38787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:13,777 DEBUG Processing 408/517 atomic regions from SNP 122188 to 122788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:13,850 DEBUG Processing 82/503 atomic regions from SNP 24326 to 24926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:14,064 DEBUG Processing 129/341 atomic regions from SNP 38487 to 39087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:14,140 DEBUG Processing 409/517 atomic regions from SNP 122488 to 123088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,178 DEBUG Processing 83/503 atomic regions from SNP 24626 to 25226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:14,388 DEBUG Processing 130/341 atomic regions from SNP 38787 to 39387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:14,506 DEBUG Processing 410/517 atomic regions from SNP 122788 to 123388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,528 DEBUG Processing 84/503 atomic regions from SNP 24926 to 25526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:14,766 DEBUG Processing 131/341 atomic regions from SNP 39087 to 39687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:14,889 DEBUG Processing 411/517 atomic regions from SNP 123088 to 123688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:14,898 DEBUG Processing 85/503 atomic regions from SNP 25226 to 25826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:15,104 DEBUG Processing 132/341 atomic regions from SNP 39387 to 39987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:15,241 DEBUG Processing 86/503 atomic regions from SNP 25526 to 26126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:15,245 DEBUG Processing 412/517 atomic regions from SNP 123388 to 123988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,358 DEBUG Processing 133/341 atomic regions from SNP 39687 to 40287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:15,536 DEBUG Processing 87/503 atomic regions from SNP 25826 to 26426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:15,544 DEBUG Processing 413/517 atomic regions from SNP 123688 to 124288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:15,574 DEBUG Processing 134/341 atomic regions from SNP 39987 to 40587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:15,767 DEBUG Processing 88/503 atomic regions from SNP 26126 to 26726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:15,772 DEBUG Processing 135/341 atomic regions from SNP 40287 to 40887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:15,787 DEBUG Processing 414/517 atomic regions from SNP 123988 to 124588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,010 DEBUG Processing 136/341 atomic regions from SNP 40587 to 41187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:16,032 DEBUG Processing 89/503 atomic regions from SNP 26426 to 27026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:16,065 DEBUG Processing 415/517 atomic regions from SNP 124288 to 124888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,251 DEBUG Processing 137/341 atomic regions from SNP 40887 to 41487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:16,313 DEBUG Processing 90/503 atomic regions from SNP 26726 to 27326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:16,355 DEBUG Processing 416/517 atomic regions from SNP 124588 to 125188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,517 DEBUG Processing 138/341 atomic regions from SNP 41187 to 41787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:16,604 DEBUG Processing 91/503 atomic regions from SNP 27026 to 27626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:16,644 DEBUG Processing 417/517 atomic regions from SNP 124888 to 125488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:16,781 DEBUG Processing 139/341 atomic regions from SNP 41487 to 42087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:16,898 DEBUG Processing 92/503 atomic regions from SNP 27326 to 27926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:16,925 DEBUG Processing 418/517 atomic regions from SNP 125188 to 125788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,059 DEBUG Processing 140/341 atomic regions from SNP 41787 to 42387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:17,199 DEBUG Processing 93/503 atomic regions from SNP 27626 to 28226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,234 DEBUG Processing 419/517 atomic regions from SNP 125488 to 126088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,335 DEBUG Processing 141/341 atomic regions from SNP 42087 to 42687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:17,530 DEBUG Processing 94/503 atomic regions from SNP 27926 to 28526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,576 DEBUG Processing 420/517 atomic regions from SNP 125788 to 126388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:17,608 DEBUG Processing 142/341 atomic regions from SNP 42387 to 42987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:17,864 DEBUG Processing 95/503 atomic regions from SNP 28226 to 28826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:17,898 DEBUG Processing 143/341 atomic regions from SNP 42687 to 43287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:17,904 DEBUG Processing 421/517 atomic regions from SNP 126088 to 126688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,187 DEBUG Processing 96/503 atomic regions from SNP 28526 to 29126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,204 DEBUG Processing 144/341 atomic regions from SNP 42987 to 43587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:18,242 DEBUG Processing 422/517 atomic regions from SNP 126388 to 126988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,504 DEBUG Processing 145/341 atomic regions from SNP 43287 to 43887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:18,524 DEBUG Processing 97/503 atomic regions from SNP 28826 to 29426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,576 DEBUG Processing 423/517 atomic regions from SNP 126688 to 127288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,685 DEBUG Processing 146/341 atomic regions from SNP 43587 to 44187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:18,762 DEBUG Processing 98/503 atomic regions from SNP 29126 to 29726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:18,854 DEBUG Processing 424/517 atomic regions from SNP 126988 to 127588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:18,916 DEBUG Processing 147/341 atomic regions from SNP 43887 to 44487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:19,035 DEBUG Processing 99/503 atomic regions from SNP 29426 to 30026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,145 DEBUG Processing 425/517 atomic regions from SNP 127288 to 127888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,156 DEBUG Processing 148/341 atomic regions from SNP 44187 to 44787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:19,346 DEBUG Processing 100/503 atomic regions from SNP 29726 to 30326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,456 DEBUG Processing 149/341 atomic regions from SNP 44487 to 45087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:19,487 DEBUG Processing 426/517 atomic regions from SNP 127588 to 128188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,674 DEBUG Processing 101/503 atomic regions from SNP 30026 to 30626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:19,712 DEBUG Processing 150/341 atomic regions from SNP 44787 to 45387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:19,791 DEBUG Processing 427/517 atomic regions from SNP 127888 to 128488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:19,990 DEBUG Processing 102/503 atomic regions from SNP 30326 to 30926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,004 DEBUG Processing 151/341 atomic regions from SNP 45087 to 45687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:20,116 DEBUG Processing 428/517 atomic regions from SNP 128188 to 128788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,271 DEBUG Processing 152/341 atomic regions from SNP 45387 to 45987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:20,303 DEBUG Processing 103/503 atomic regions from SNP 30626 to 31226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,413 DEBUG Processing 429/517 atomic regions from SNP 128488 to 129088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,543 DEBUG Processing 153/341 atomic regions from SNP 45687 to 46287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:20,588 DEBUG Processing 104/503 atomic regions from SNP 30926 to 31526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:20,730 DEBUG Processing 430/517 atomic regions from SNP 128788 to 129388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:20,824 DEBUG Processing 154/341 atomic regions from SNP 45987 to 46587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:20,881 DEBUG Processing 105/503 atomic regions from SNP 31226 to 31826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,054 DEBUG Processing 431/517 atomic regions from SNP 129088 to 129688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,104 DEBUG Processing 155/341 atomic regions from SNP 46287 to 46887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:21,191 DEBUG Processing 106/503 atomic regions from SNP 31526 to 32126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,368 DEBUG Processing 432/517 atomic regions from SNP 129388 to 129988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,374 DEBUG Processing 156/341 atomic regions from SNP 46587 to 47187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:21,506 DEBUG Processing 107/503 atomic regions from SNP 31826 to 32426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,663 DEBUG Processing 157/341 atomic regions from SNP 46887 to 47487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:21,681 DEBUG Processing 433/517 atomic regions from SNP 129688 to 130288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:21,809 DEBUG Processing 108/503 atomic regions from SNP 32126 to 32726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:21,954 DEBUG Processing 158/341 atomic regions from SNP 47187 to 47787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:22,015 DEBUG Processing 434/517 atomic regions from SNP 129988 to 130588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,102 DEBUG Processing 109/503 atomic regions from SNP 32426 to 33026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,280 DEBUG Processing 159/341 atomic regions from SNP 47487 to 48087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:22,351 DEBUG Processing 435/517 atomic regions from SNP 130288 to 130888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,441 DEBUG Processing 110/503 atomic regions from SNP 32726 to 33326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,560 DEBUG Processing 160/341 atomic regions from SNP 47787 to 48387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:22,663 DEBUG Processing 436/517 atomic regions from SNP 130588 to 131188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:22,762 DEBUG Processing 111/503 atomic regions from SNP 33026 to 33626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:22,846 DEBUG Processing 161/341 atomic regions from SNP 48087 to 48687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,010 DEBUG Processing 437/517 atomic regions from SNP 130888 to 131488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,080 DEBUG Processing 112/503 atomic regions from SNP 33326 to 33926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,147 DEBUG Processing 162/341 atomic regions from SNP 48387 to 48987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,351 DEBUG Processing 438/517 atomic regions from SNP 131188 to 131788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,402 DEBUG Processing 113/503 atomic regions from SNP 33626 to 34226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,447 DEBUG Processing 163/341 atomic regions from SNP 48687 to 49287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:23,703 DEBUG Processing 439/517 atomic regions from SNP 131488 to 132088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:23,731 DEBUG Processing 114/503 atomic regions from SNP 33926 to 34526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:23,746 DEBUG Processing 164/341 atomic regions from SNP 48987 to 49587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,031 DEBUG Processing 440/517 atomic regions from SNP 131788 to 132388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,039 DEBUG Processing 165/341 atomic regions from SNP 49287 to 49887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,056 DEBUG Processing 115/503 atomic regions from SNP 34226 to 34826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,326 DEBUG Processing 166/341 atomic regions from SNP 49587 to 50187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,359 DEBUG Processing 441/517 atomic regions from SNP 132088 to 132688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,371 DEBUG Processing 116/503 atomic regions from SNP 34526 to 35126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,599 DEBUG Processing 167/341 atomic regions from SNP 49887 to 50487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:24,693 DEBUG Processing 442/517 atomic regions from SNP 132388 to 132988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:24,694 DEBUG Processing 117/503 atomic regions from SNP 34826 to 35426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:24,877 DEBUG Processing 168/341 atomic regions from SNP 50187 to 50787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,002 DEBUG Processing 118/503 atomic regions from SNP 35126 to 35726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,005 DEBUG Processing 443/517 atomic regions from SNP 132688 to 133288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,178 DEBUG Processing 169/341 atomic regions from SNP 50487 to 51087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,297 DEBUG Processing 444/517 atomic regions from SNP 132988 to 133588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,308 DEBUG Processing 119/503 atomic regions from SNP 35426 to 36026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,451 DEBUG Processing 170/341 atomic regions from SNP 50787 to 51387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,612 DEBUG Processing 445/517 atomic regions from SNP 133288 to 133888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,651 DEBUG Processing 120/503 atomic regions from SNP 35726 to 36326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,707 DEBUG Processing 171/341 atomic regions from SNP 51087 to 51687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:25,900 DEBUG Processing 446/517 atomic regions from SNP 133588 to 134188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:25,951 DEBUG Processing 121/503 atomic regions from SNP 36026 to 36626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:25,985 DEBUG Processing 172/341 atomic regions from SNP 51387 to 51987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,152 DEBUG Processing 447/517 atomic regions from SNP 133888 to 134488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,201 DEBUG Processing 122/503 atomic regions from SNP 36326 to 36926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,262 DEBUG Processing 173/341 atomic regions from SNP 51687 to 52287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,474 DEBUG Processing 448/517 atomic regions from SNP 134188 to 134788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,503 DEBUG Processing 123/503 atomic regions from SNP 36626 to 37226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:26,505 DEBUG Processing 174/341 atomic regions from SNP 51987 to 52587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,824 DEBUG Processing 175/341 atomic regions from SNP 52287 to 52887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:26,829 DEBUG Processing 449/517 atomic regions from SNP 134488 to 135088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:26,852 DEBUG Processing 124/503 atomic regions from SNP 36926 to 37526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,143 DEBUG Processing 176/341 atomic regions from SNP 52587 to 53187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,171 DEBUG Processing 450/517 atomic regions from SNP 134788 to 135388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,184 DEBUG Processing 125/503 atomic regions from SNP 37226 to 37826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,374 DEBUG Processing 177/341 atomic regions from SNP 52887 to 53487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,452 DEBUG Processing 126/503 atomic regions from SNP 37526 to 38126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,465 DEBUG Processing 451/517 atomic regions from SNP 135088 to 135688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,623 DEBUG Processing 178/341 atomic regions from SNP 53187 to 53787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:27,724 DEBUG Processing 127/503 atomic regions from SNP 37826 to 38426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:27,748 DEBUG Processing 452/517 atomic regions from SNP 135388 to 135988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:27,904 DEBUG Processing 179/341 atomic regions from SNP 53487 to 54087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,008 DEBUG Processing 128/503 atomic regions from SNP 38126 to 38726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,015 DEBUG Processing 453/517 atomic regions from SNP 135688 to 136288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,159 DEBUG Processing 180/341 atomic regions from SNP 53787 to 54387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,286 DEBUG Processing 129/503 atomic regions from SNP 38426 to 39026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,312 DEBUG Processing 454/517 atomic regions from SNP 135988 to 136588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,362 DEBUG Processing 181/341 atomic regions from SNP 54087 to 54687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,492 DEBUG Processing 130/503 atomic regions from SNP 38726 to 39326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,524 DEBUG Processing 182/341 atomic regions from SNP 54387 to 54987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,545 DEBUG Processing 455/517 atomic regions from SNP 136288 to 136888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,730 DEBUG Processing 183/341 atomic regions from SNP 54687 to 55287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,748 DEBUG Processing 131/503 atomic regions from SNP 39026 to 39626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:28,803 DEBUG Processing 456/517 atomic regions from SNP 136588 to 137188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:28,896 DEBUG Processing 184/341 atomic regions from SNP 54987 to 55587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:28,949 DEBUG Processing 132/503 atomic regions from SNP 39326 to 39926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,032 DEBUG Processing 457/517 atomic regions from SNP 136888 to 137488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,054 DEBUG Processing 185/341 atomic regions from SNP 55287 to 55887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,136 DEBUG Processing 133/503 atomic regions from SNP 39626 to 40226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,246 DEBUG Processing 186/341 atomic regions from SNP 55587 to 56187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,294 DEBUG Processing 458/517 atomic regions from SNP 137188 to 137788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,344 DEBUG Processing 134/503 atomic regions from SNP 39926 to 40526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,407 DEBUG Processing 187/341 atomic regions from SNP 55887 to 56487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,504 DEBUG Processing 459/517 atomic regions from SNP 137488 to 138088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,539 DEBUG Processing 135/503 atomic regions from SNP 40226 to 40826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,569 DEBUG Processing 188/341 atomic regions from SNP 56187 to 56787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,701 DEBUG Processing 460/517 atomic regions from SNP 137788 to 138388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,727 DEBUG Processing 136/503 atomic regions from SNP 40526 to 41126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:29,731 DEBUG Processing 189/341 atomic regions from SNP 56487 to 57087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,893 DEBUG Processing 190/341 atomic regions from SNP 56787 to 57387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:29,900 DEBUG Processing 461/517 atomic regions from SNP 138088 to 138688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:29,916 DEBUG Processing 137/503 atomic regions from SNP 40826 to 41426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,058 DEBUG Processing 191/341 atomic regions from SNP 57087 to 57687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,110 DEBUG Processing 462/517 atomic regions from SNP 138388 to 138988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,114 DEBUG Processing 138/503 atomic regions from SNP 41126 to 41726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,219 DEBUG Processing 192/341 atomic regions from SNP 57387 to 57987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,303 DEBUG Processing 139/503 atomic regions from SNP 41426 to 42026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,316 DEBUG Processing 463/517 atomic regions from SNP 138688 to 139288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,410 DEBUG Processing 193/341 atomic regions from SNP 57687 to 58287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,507 DEBUG Processing 140/503 atomic regions from SNP 41726 to 42326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,527 DEBUG Processing 464/517 atomic regions from SNP 138988 to 139588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,569 DEBUG Processing 194/341 atomic regions from SNP 57987 to 58587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,700 DEBUG Processing 141/503 atomic regions from SNP 42026 to 42626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,730 DEBUG Processing 195/341 atomic regions from SNP 58287 to 58887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,736 DEBUG Processing 465/517 atomic regions from SNP 139288 to 139888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:30,903 DEBUG Processing 142/503 atomic regions from SNP 42326 to 42926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:30,927 DEBUG Processing 196/341 atomic regions from SNP 58587 to 59187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:30,959 DEBUG Processing 466/517 atomic regions from SNP 139588 to 140188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,127 DEBUG Processing 197/341 atomic regions from SNP 58887 to 59487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,131 DEBUG Processing 143/503 atomic regions from SNP 42626 to 43226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,187 DEBUG Processing 467/517 atomic regions from SNP 139888 to 140488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,320 DEBUG Processing 198/341 atomic regions from SNP 59187 to 59787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,353 DEBUG Processing 144/503 atomic regions from SNP 42926 to 43526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,428 DEBUG Processing 468/517 atomic regions from SNP 140188 to 140788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,528 DEBUG Processing 199/341 atomic regions from SNP 59487 to 60087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,565 DEBUG Processing 145/503 atomic regions from SNP 43226 to 43826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,670 DEBUG Processing 469/517 atomic regions from SNP 140488 to 141088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,774 DEBUG Processing 200/341 atomic regions from SNP 59787 to 60387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:31,830 DEBUG Processing 146/503 atomic regions from SNP 43526 to 44126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:31,898 DEBUG Processing 470/517 atomic regions from SNP 140788 to 141388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:31,943 DEBUG Processing 201/341 atomic regions from SNP 60087 to 60687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,022 DEBUG Processing 147/503 atomic regions from SNP 43826 to 44426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,106 DEBUG Processing 202/341 atomic regions from SNP 60387 to 60987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,136 DEBUG Processing 471/517 atomic regions from SNP 141088 to 141688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,206 DEBUG Processing 148/503 atomic regions from SNP 44126 to 44726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,271 DEBUG Processing 203/341 atomic regions from SNP 60687 to 61287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,356 DEBUG Processing 472/517 atomic regions from SNP 141388 to 141988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,391 DEBUG Processing 149/503 atomic regions from SNP 44426 to 45026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,431 DEBUG Processing 204/341 atomic regions from SNP 60987 to 61587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,560 DEBUG Processing 473/517 atomic regions from SNP 141688 to 142288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,584 DEBUG Processing 150/503 atomic regions from SNP 44726 to 45326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,593 DEBUG Processing 205/341 atomic regions from SNP 61287 to 61887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,757 DEBUG Processing 474/517 atomic regions from SNP 141988 to 142588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,758 DEBUG Processing 206/341 atomic regions from SNP 61587 to 62187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,773 DEBUG Processing 151/503 atomic regions from SNP 45026 to 45626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:32,920 DEBUG Processing 207/341 atomic regions from SNP 61887 to 62487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:32,954 DEBUG Processing 475/517 atomic regions from SNP 142288 to 142888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:32,958 DEBUG Processing 152/503 atomic regions from SNP 45326 to 45926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,079 DEBUG Processing 208/341 atomic regions from SNP 62187 to 62787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,140 DEBUG Processing 153/503 atomic regions from SNP 45626 to 46226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,150 DEBUG Processing 476/517 atomic regions from SNP 142588 to 143188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,245 DEBUG Processing 209/341 atomic regions from SNP 62487 to 63087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,323 DEBUG Processing 154/503 atomic regions from SNP 45926 to 46526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,347 DEBUG Processing 477/517 atomic regions from SNP 142888 to 143488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,449 DEBUG Processing 210/341 atomic regions from SNP 62787 to 63387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,533 DEBUG Processing 155/503 atomic regions from SNP 46226 to 46826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,605 DEBUG Processing 478/517 atomic regions from SNP 143188 to 143788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,685 DEBUG Processing 211/341 atomic regions from SNP 63087 to 63687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:33,790 DEBUG Processing 156/503 atomic regions from SNP 46526 to 47126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:33,872 DEBUG Processing 479/517 atomic regions from SNP 143488 to 144088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:33,900 DEBUG Processing 212/341 atomic regions from SNP 63387 to 63987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,066 DEBUG Processing 157/503 atomic regions from SNP 46826 to 47426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,106 DEBUG Processing 213/341 atomic regions from SNP 63687 to 64287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,111 DEBUG Processing 480/517 atomic regions from SNP 143788 to 144388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,379 DEBUG Processing 158/503 atomic regions from SNP 47126 to 47726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,424 DEBUG Processing 214/341 atomic regions from SNP 63987 to 64587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,454 DEBUG Processing 481/517 atomic regions from SNP 144088 to 144688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:34,697 DEBUG Processing 159/503 atomic regions from SNP 47426 to 48026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:34,735 DEBUG Processing 215/341 atomic regions from SNP 64287 to 64887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:34,804 DEBUG Processing 482/517 atomic regions from SNP 144388 to 144988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,007 DEBUG Processing 160/503 atomic regions from SNP 47726 to 48326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,024 DEBUG Processing 216/341 atomic regions from SNP 64587 to 65187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,099 DEBUG Processing 483/517 atomic regions from SNP 144688 to 145288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,276 DEBUG Processing 217/341 atomic regions from SNP 64887 to 65487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,318 DEBUG Processing 161/503 atomic regions from SNP 48026 to 48626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,335 DEBUG Processing 484/517 atomic regions from SNP 144988 to 145588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,476 DEBUG Processing 218/341 atomic regions from SNP 65187 to 65787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,586 DEBUG Processing 162/503 atomic regions from SNP 48326 to 48926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,591 DEBUG Processing 485/517 atomic regions from SNP 145288 to 145888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,642 DEBUG Processing 219/341 atomic regions from SNP 65487 to 66087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,776 DEBUG Processing 163/503 atomic regions from SNP 48626 to 49226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,791 DEBUG Processing 486/517 atomic regions from SNP 145588 to 146188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:35,805 DEBUG Processing 220/341 atomic regions from SNP 65787 to 66387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:35,971 DEBUG Processing 164/503 atomic regions from SNP 48926 to 49526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:35,985 DEBUG Processing 221/341 atomic regions from SNP 66087 to 66687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,010 DEBUG Processing 487/517 atomic regions from SNP 145888 to 146488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,194 DEBUG Processing 165/503 atomic regions from SNP 49226 to 49826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,197 DEBUG Processing 222/341 atomic regions from SNP 66387 to 66987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,272 DEBUG Processing 488/517 atomic regions from SNP 146188 to 146788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,378 DEBUG Processing 223/341 atomic regions from SNP 66687 to 67287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,404 DEBUG Processing 166/503 atomic regions from SNP 49526 to 50126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,494 DEBUG Processing 489/517 atomic regions from SNP 146488 to 147088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,646 DEBUG Processing 224/341 atomic regions from SNP 66987 to 67587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,696 DEBUG Processing 167/503 atomic regions from SNP 49826 to 50426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:36,763 DEBUG Processing 490/517 atomic regions from SNP 146788 to 147388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:36,887 DEBUG Processing 225/341 atomic regions from SNP 67287 to 67887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:36,944 DEBUG Processing 168/503 atomic regions from SNP 50126 to 50726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,003 DEBUG Processing 491/517 atomic regions from SNP 147088 to 147688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,143 DEBUG Processing 226/341 atomic regions from SNP 67587 to 68187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,221 DEBUG Processing 169/503 atomic regions from SNP 50426 to 51026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,250 DEBUG Processing 492/517 atomic regions from SNP 147388 to 147988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,317 DEBUG Processing 227/341 atomic regions from SNP 67887 to 68487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,427 DEBUG Processing 170/503 atomic regions from SNP 50726 to 51326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,494 DEBUG Processing 493/517 atomic regions from SNP 147688 to 148288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,503 DEBUG Processing 228/341 atomic regions from SNP 68187 to 68787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,641 DEBUG Processing 171/503 atomic regions from SNP 51026 to 51626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,728 DEBUG Processing 229/341 atomic regions from SNP 68487 to 69087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:37,761 DEBUG Processing 494/517 atomic regions from SNP 147988 to 148588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:37,862 DEBUG Processing 172/503 atomic regions from SNP 51326 to 51926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:37,926 DEBUG Processing 230/341 atomic regions from SNP 68787 to 69387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,002 DEBUG Processing 495/517 atomic regions from SNP 148288 to 148888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,122 DEBUG Processing 173/503 atomic regions from SNP 51626 to 52226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,152 DEBUG Processing 231/341 atomic regions from SNP 69087 to 69687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,209 DEBUG Processing 496/517 atomic regions from SNP 148588 to 149188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,320 DEBUG Processing 232/341 atomic regions from SNP 69387 to 69987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,321 DEBUG Processing 174/503 atomic regions from SNP 51926 to 52526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,422 DEBUG Processing 497/517 atomic regions from SNP 148888 to 149488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,479 DEBUG Processing 233/341 atomic regions from SNP 69687 to 70287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,507 DEBUG Processing 175/503 atomic regions from SNP 52226 to 52826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,620 DEBUG Processing 498/517 atomic regions from SNP 149188 to 149788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,638 DEBUG Processing 234/341 atomic regions from SNP 69987 to 70587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,707 DEBUG Processing 176/503 atomic regions from SNP 52526 to 53126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,790 DEBUG Processing 235/341 atomic regions from SNP 70287 to 70887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:38,810 DEBUG Processing 499/517 atomic regions from SNP 149488 to 150088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:38,941 DEBUG Processing 177/503 atomic regions from SNP 52826 to 53426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:38,997 DEBUG Processing 236/341 atomic regions from SNP 70587 to 71187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,036 DEBUG Processing 500/517 atomic regions from SNP 149788 to 150388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,187 DEBUG Processing 178/503 atomic regions from SNP 53126 to 53726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,232 DEBUG Processing 237/341 atomic regions from SNP 70887 to 71487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,279 DEBUG Processing 501/517 atomic regions from SNP 150088 to 150688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,391 DEBUG Processing 238/341 atomic regions from SNP 71187 to 71787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,401 DEBUG Processing 179/503 atomic regions from SNP 53426 to 54026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,487 DEBUG Processing 502/517 atomic regions from SNP 150388 to 150988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,546 DEBUG Processing 239/341 atomic regions from SNP 71487 to 72087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,605 DEBUG Processing 180/503 atomic regions from SNP 53726 to 54326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,683 DEBUG Processing 503/517 atomic regions from SNP 150688 to 151288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,739 DEBUG Processing 240/341 atomic regions from SNP 71787 to 72387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,803 DEBUG Processing 181/503 atomic regions from SNP 54026 to 54626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:39,876 DEBUG Processing 504/517 atomic regions from SNP 150988 to 151588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:39,932 DEBUG Processing 241/341 atomic regions from SNP 72087 to 72687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:39,993 DEBUG Processing 182/503 atomic regions from SNP 54326 to 54926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,089 DEBUG Processing 505/517 atomic regions from SNP 151288 to 151888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,158 DEBUG Processing 242/341 atomic regions from SNP 72387 to 72987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,227 DEBUG Processing 183/503 atomic regions from SNP 54626 to 55226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,320 DEBUG Processing 506/517 atomic regions from SNP 151588 to 152188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,321 DEBUG Processing 243/341 atomic regions from SNP 72687 to 73287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,443 DEBUG Processing 184/503 atomic regions from SNP 54926 to 55526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,479 DEBUG Processing 244/341 atomic regions from SNP 72987 to 73587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,521 DEBUG Processing 507/517 atomic regions from SNP 151888 to 152488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,676 DEBUG Processing 185/503 atomic regions from SNP 55226 to 55826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,688 DEBUG Processing 245/341 atomic regions from SNP 73287 to 73887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,726 DEBUG Processing 508/517 atomic regions from SNP 152188 to 152788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:40,852 DEBUG Processing 246/341 atomic regions from SNP 73587 to 74187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:40,882 DEBUG Processing 186/503 atomic regions from SNP 55526 to 56126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:40,922 DEBUG Processing 509/517 atomic regions from SNP 152488 to 153088 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,001 DEBUG Processing 247/341 atomic regions from SNP 73887 to 74487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,085 DEBUG Processing 187/503 atomic regions from SNP 55826 to 56426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,116 DEBUG Processing 510/517 atomic regions from SNP 152788 to 153388 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,176 DEBUG Processing 248/341 atomic regions from SNP 74187 to 74787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,281 DEBUG Processing 188/503 atomic regions from SNP 56126 to 56726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,308 DEBUG Processing 511/517 atomic regions from SNP 153088 to 153688 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,362 DEBUG Processing 249/341 atomic regions from SNP 74487 to 75087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,517 DEBUG Processing 189/503 atomic regions from SNP 56426 to 57026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,541 DEBUG Processing 512/517 atomic regions from SNP 153388 to 153988 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,570 DEBUG Processing 250/341 atomic regions from SNP 74787 to 75387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,730 DEBUG Processing 190/503 atomic regions from SNP 56726 to 57326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:41,733 DEBUG Processing 513/517 atomic regions from SNP 153688 to 154288 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,760 DEBUG Processing 251/341 atomic regions from SNP 75087 to 75687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,969 DEBUG Processing 252/341 atomic regions from SNP 75387 to 75987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:41,973 DEBUG Processing 514/517 atomic regions from SNP 153988 to 154588 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:41,988 DEBUG Processing 191/503 atomic regions from SNP 57026 to 57626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,158 DEBUG Processing 253/341 atomic regions from SNP 75687 to 76287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,167 DEBUG Processing 515/517 atomic regions from SNP 154288 to 154888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,198 DEBUG Processing 192/503 atomic regions from SNP 57326 to 57926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,346 DEBUG Processing 254/341 atomic regions from SNP 75987 to 76587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,364 DEBUG Processing 516/517 atomic regions from SNP 154588 to 155188 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,377 DEBUG Processing 193/503 atomic regions from SNP 57626 to 58226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,531 DEBUG Processing 255/341 atomic regions from SNP 76287 to 76887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,561 DEBUG Processing 194/503 atomic regions from SNP 57926 to 58526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,561 DEBUG Processing 517/517 atomic regions from SNP 154888 to 155488 for chr17 (subchromosome 1 of 1). 2025-01-31 09:56:42,686 DEBUG Unique SNPs positions in subchromosome 1: 155489 2025-01-31 09:56:42,715 DEBUG Processing 256/341 atomic regions from SNP 76587 to 77187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,745 DEBUG Processing 195/503 atomic regions from SNP 58226 to 58826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:42,888 DEBUG Processing 257/341 atomic regions from SNP 76887 to 77487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:42,927 DEBUG Processing 196/503 atomic regions from SNP 58526 to 59126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,056 DEBUG Processing 258/341 atomic regions from SNP 77187 to 77787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,113 DEBUG Processing 197/503 atomic regions from SNP 58826 to 59426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,226 DEBUG Processing 259/341 atomic regions from SNP 77487 to 78087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,375 DEBUG Processing 198/503 atomic regions from SNP 59126 to 59726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,419 DEBUG Processing 260/341 atomic regions from SNP 77787 to 78387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,657 DEBUG Processing 199/503 atomic regions from SNP 59426 to 60026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:43,660 DEBUG Processing 261/341 atomic regions from SNP 78087 to 78687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,919 DEBUG Processing 262/341 atomic regions from SNP 78387 to 78987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:43,949 DEBUG Processing 200/503 atomic regions from SNP 59726 to 60326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,162 DEBUG Processing 263/341 atomic regions from SNP 78687 to 79287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,224 DEBUG Processing 201/503 atomic regions from SNP 60026 to 60626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,328 DEBUG Processing 264/341 atomic regions from SNP 78987 to 79587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,422 DEBUG Processing 202/503 atomic regions from SNP 60326 to 60926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,484 DEBUG Processing 265/341 atomic regions from SNP 79287 to 79887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,603 DEBUG Processing 203/503 atomic regions from SNP 60626 to 61226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,646 DEBUG Processing 266/341 atomic regions from SNP 79587 to 80187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:44,802 DEBUG Processing 204/503 atomic regions from SNP 60926 to 61526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:44,805 DEBUG Processing 267/341 atomic regions from SNP 79887 to 80487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,018 DEBUG Processing 268/341 atomic regions from SNP 80187 to 80787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,037 DEBUG Processing 205/503 atomic regions from SNP 61226 to 61826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,246 DEBUG Processing 269/341 atomic regions from SNP 80487 to 81087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,301 DEBUG Processing 206/503 atomic regions from SNP 61526 to 62126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,408 DEBUG Processing 270/341 atomic regions from SNP 80787 to 81387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,491 DEBUG Processing 207/503 atomic regions from SNP 61826 to 62426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,570 DEBUG Processing 271/341 atomic regions from SNP 81087 to 81687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,688 DEBUG Processing 208/503 atomic regions from SNP 62126 to 62726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,733 DEBUG Processing 272/341 atomic regions from SNP 81387 to 81987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:45,908 DEBUG Processing 209/503 atomic regions from SNP 62426 to 63026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:45,935 DEBUG Processing 273/341 atomic regions from SNP 81687 to 82287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,099 DEBUG Processing 210/503 atomic regions from SNP 62726 to 63326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,124 DEBUG Processing 274/341 atomic regions from SNP 81987 to 82587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,298 DEBUG Processing 275/341 atomic regions from SNP 82287 to 82887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,301 DEBUG Processing 211/503 atomic regions from SNP 63026 to 63626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,457 DEBUG Processing 276/341 atomic regions from SNP 82587 to 83187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,481 DEBUG Processing 212/503 atomic regions from SNP 63326 to 63926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,620 DEBUG Processing 277/341 atomic regions from SNP 82887 to 83487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,664 DEBUG Processing 213/503 atomic regions from SNP 63626 to 64226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,781 DEBUG Processing 278/341 atomic regions from SNP 83187 to 83787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:46,849 DEBUG Processing 214/503 atomic regions from SNP 63926 to 64526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:46,946 DEBUG Processing 279/341 atomic regions from SNP 83487 to 84087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,031 DEBUG Processing 215/503 atomic regions from SNP 64226 to 64826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,180 DEBUG Processing 280/341 atomic regions from SNP 83787 to 84387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,281 DEBUG Processing 216/503 atomic regions from SNP 64526 to 65126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,429 DEBUG Processing 281/341 atomic regions from SNP 84087 to 84687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,553 DEBUG Processing 217/503 atomic regions from SNP 64826 to 65426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,708 DEBUG Processing 282/341 atomic regions from SNP 84387 to 84987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:47,839 DEBUG Processing 218/503 atomic regions from SNP 65126 to 65726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:47,958 DEBUG Processing 283/341 atomic regions from SNP 84687 to 85287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,116 DEBUG Processing 219/503 atomic regions from SNP 65426 to 66026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,157 DEBUG Processing 284/341 atomic regions from SNP 84987 to 85587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,309 DEBUG Processing 220/503 atomic regions from SNP 65726 to 66326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,327 DEBUG Processing 285/341 atomic regions from SNP 85287 to 85887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,487 DEBUG Processing 286/341 atomic regions from SNP 85587 to 86187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,504 DEBUG Processing 221/503 atomic regions from SNP 66026 to 66626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,650 DEBUG Processing 287/341 atomic regions from SNP 85887 to 86487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,708 DEBUG Processing 222/503 atomic regions from SNP 66326 to 66926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:48,847 DEBUG Processing 288/341 atomic regions from SNP 86187 to 86787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:48,940 DEBUG Processing 223/503 atomic regions from SNP 66626 to 67226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,081 DEBUG Processing 289/341 atomic regions from SNP 86487 to 87087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,194 DEBUG Processing 224/503 atomic regions from SNP 66926 to 67526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,284 DEBUG Processing 290/341 atomic regions from SNP 86787 to 87387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,423 DEBUG Processing 225/503 atomic regions from SNP 67226 to 67826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,451 DEBUG Processing 291/341 atomic regions from SNP 87087 to 87687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,670 DEBUG Processing 226/503 atomic regions from SNP 67526 to 68126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,680 DEBUG Processing 292/341 atomic regions from SNP 87387 to 87987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:49,707 DEBUG Subchromosome time: 151.59469203278422, subchromosome SNPs: 155489 2025-01-31 09:56:49,707 DEBUG Estimated BADs: [1.83, 0.61, 9.14, 5.49, 0.46, 1.83, 5.49, 0.91, 9.14, 0.37, 1.83, 0.30, 1.83, 0.26, 3.66, 0.26] SNP counts: [20851, 10678, 4657, 20099, 11102, 2223, 5871, 12326, 2751, 8014, 24313, 2986, 6576, 1821, 12598, 8623] SNP IDs counts: [20851, 10678, 4657, 20099, 11102, 2223, 5871, 12326, 2751, 8014, 24313, 2986, 6576, 1821, 12598, 8623] Critical gap: 534996bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.92Mbp, 23.53Mbp, 26.01Mbp, 37.08Mbp, 44.36Mbp, 45.55Mbp, 48.66Mbp, 55.93Mbp, 57.37Mbp, 62.34Mbp, 75.85Mbp, 77.72Mbp, 81.37Mbp, 82.50Mbp, 89.30Mbp, 94.99Mbp] 2025-01-31 09:56:49,707 DEBUG chr17 time: 151.59516848251224 s 2025-01-31 09:56:49,819 DEBUG chr17: Fitting background model for 16 segments 2025-01-31 09:56:49,900 DEBUG Processing 227/503 atomic regions from SNP 67826 to 68426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:49,932 DEBUG Processing 293/341 atomic regions from SNP 87687 to 88287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,089 DEBUG Processing 228/503 atomic regions from SNP 68126 to 68726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,116 DEBUG Processing 294/341 atomic regions from SNP 87987 to 88587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,276 DEBUG Processing 295/341 atomic regions from SNP 88287 to 88887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,288 DEBUG Processing 229/503 atomic regions from SNP 68426 to 69026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,449 DEBUG Processing 296/341 atomic regions from SNP 88587 to 89187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,478 DEBUG Processing 230/503 atomic regions from SNP 68726 to 69326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,628 DEBUG Processing 297/341 atomic regions from SNP 88887 to 89487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,659 DEBUG Processing 231/503 atomic regions from SNP 69026 to 69626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,785 DEBUG Processing 298/341 atomic regions from SNP 89187 to 89787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:50,841 DEBUG Processing 232/503 atomic regions from SNP 69326 to 69926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:50,940 DEBUG Processing 299/341 atomic regions from SNP 89487 to 90087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,025 DEBUG Processing 233/503 atomic regions from SNP 69626 to 70226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,100 DEBUG Processing 300/341 atomic regions from SNP 89787 to 90387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,206 DEBUG Processing 234/503 atomic regions from SNP 69926 to 70526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,257 DEBUG Processing 301/341 atomic regions from SNP 90087 to 90687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,391 DEBUG Processing 235/503 atomic regions from SNP 70226 to 70826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,416 DEBUG Processing 302/341 atomic regions from SNP 90387 to 90987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,575 DEBUG Processing 303/341 atomic regions from SNP 90687 to 91287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,581 DEBUG Processing 236/503 atomic regions from SNP 70526 to 71126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,728 DEBUG Processing 304/341 atomic regions from SNP 90987 to 91587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,769 DEBUG Processing 237/503 atomic regions from SNP 70826 to 71426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:51,886 DEBUG Processing 305/341 atomic regions from SNP 91287 to 91887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:51,956 DEBUG Processing 238/503 atomic regions from SNP 71126 to 71726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,041 DEBUG Processing 306/341 atomic regions from SNP 91587 to 92187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,138 DEBUG Processing 239/503 atomic regions from SNP 71426 to 72026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,198 DEBUG Processing 307/341 atomic regions from SNP 91887 to 92487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,325 DEBUG Processing 240/503 atomic regions from SNP 71726 to 72326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,353 DEBUG Processing 308/341 atomic regions from SNP 92187 to 92787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,517 DEBUG Processing 241/503 atomic regions from SNP 72026 to 72626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,528 DEBUG Processing 309/341 atomic regions from SNP 92487 to 93087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,749 DEBUG Processing 310/341 atomic regions from SNP 92787 to 93387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:52,760 DEBUG Processing 242/503 atomic regions from SNP 72326 to 72926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:52,953 DEBUG Processing 311/341 atomic regions from SNP 93087 to 93687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,015 DEBUG Processing 243/503 atomic regions from SNP 72626 to 73226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,113 DEBUG Processing 312/341 atomic regions from SNP 93387 to 93987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,203 DEBUG Processing 244/503 atomic regions from SNP 72926 to 73526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,281 DEBUG Processing 313/341 atomic regions from SNP 93687 to 94287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,384 DEBUG Processing 245/503 atomic regions from SNP 73226 to 73826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,437 DEBUG Processing 314/341 atomic regions from SNP 93987 to 94587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,574 DEBUG Processing 246/503 atomic regions from SNP 73526 to 74126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,592 DEBUG Processing 315/341 atomic regions from SNP 94287 to 94887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,795 DEBUG Processing 316/341 atomic regions from SNP 94587 to 95187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:53,815 DEBUG Processing 247/503 atomic regions from SNP 73826 to 74426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:53,954 DEBUG Processing 317/341 atomic regions from SNP 94887 to 95487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,023 DEBUG Processing 248/503 atomic regions from SNP 74126 to 74726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,112 DEBUG Processing 318/341 atomic regions from SNP 95187 to 95787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,228 DEBUG Processing 249/503 atomic regions from SNP 74426 to 75026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,272 DEBUG Processing 319/341 atomic regions from SNP 95487 to 96087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,412 DEBUG Processing 250/503 atomic regions from SNP 74726 to 75326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,433 DEBUG Processing 320/341 atomic regions from SNP 95787 to 96387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,599 DEBUG Processing 321/341 atomic regions from SNP 96087 to 96687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,601 DEBUG Processing 251/503 atomic regions from SNP 75026 to 75626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,768 DEBUG Processing 322/341 atomic regions from SNP 96387 to 96987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:54,798 DEBUG Processing 252/503 atomic regions from SNP 75326 to 75926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:54,931 DEBUG Processing 323/341 atomic regions from SNP 96687 to 97287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,009 DEBUG Processing 253/503 atomic regions from SNP 75626 to 76226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,090 DEBUG Processing 324/341 atomic regions from SNP 96987 to 97587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,223 DEBUG Processing 254/503 atomic regions from SNP 75926 to 76526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,254 DEBUG Processing 325/341 atomic regions from SNP 97287 to 97887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,411 DEBUG Processing 255/503 atomic regions from SNP 76226 to 76826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,420 DEBUG Processing 326/341 atomic regions from SNP 97587 to 98187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,583 DEBUG Processing 327/341 atomic regions from SNP 97887 to 98487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,602 DEBUG Processing 256/503 atomic regions from SNP 76526 to 77126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,736 DEBUG Processing 328/341 atomic regions from SNP 98187 to 98787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,786 DEBUG Processing 257/503 atomic regions from SNP 76826 to 77426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:55,896 DEBUG Processing 329/341 atomic regions from SNP 98487 to 99087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:55,971 DEBUG Processing 258/503 atomic regions from SNP 77126 to 77726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,060 DEBUG Processing 330/341 atomic regions from SNP 98787 to 99387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,161 DEBUG Processing 259/503 atomic regions from SNP 77426 to 78026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,226 DEBUG Processing 331/341 atomic regions from SNP 99087 to 99687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,349 DEBUG Processing 260/503 atomic regions from SNP 77726 to 78326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,384 DEBUG Processing 332/341 atomic regions from SNP 99387 to 99987 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,538 DEBUG Processing 261/503 atomic regions from SNP 78026 to 78626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,541 DEBUG Processing 333/341 atomic regions from SNP 99687 to 100287 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,698 DEBUG Processing 334/341 atomic regions from SNP 99987 to 100587 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,721 DEBUG Processing 262/503 atomic regions from SNP 78326 to 78926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:56,858 DEBUG Processing 335/341 atomic regions from SNP 100287 to 100887 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:56,903 DEBUG Processing 263/503 atomic regions from SNP 78626 to 79226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,024 DEBUG Processing 336/341 atomic regions from SNP 100587 to 101187 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,095 DEBUG Processing 264/503 atomic regions from SNP 78926 to 79526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,186 DEBUG Processing 337/341 atomic regions from SNP 100887 to 101487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,289 DEBUG Processing 265/503 atomic regions from SNP 79226 to 79826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,345 DEBUG Processing 338/341 atomic regions from SNP 101187 to 101787 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,485 DEBUG Processing 266/503 atomic regions from SNP 79526 to 80126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,502 DEBUG Processing 339/341 atomic regions from SNP 101487 to 102087 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,672 DEBUG Processing 340/341 atomic regions from SNP 101787 to 102387 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,673 DEBUG Processing 267/503 atomic regions from SNP 79826 to 80426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,834 DEBUG Processing 341/341 atomic regions from SNP 102087 to 102687 for chr19 (subchromosome 1 of 1). 2025-01-31 09:56:57,862 DEBUG Processing 268/503 atomic regions from SNP 80126 to 80726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:57,951 DEBUG Unique SNPs positions in subchromosome 1: 102688 2025-01-31 09:56:58,050 DEBUG Processing 269/503 atomic regions from SNP 80426 to 81026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,242 DEBUG Processing 270/503 atomic regions from SNP 80726 to 81326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,431 DEBUG Processing 271/503 atomic regions from SNP 81026 to 81626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,628 DEBUG Processing 272/503 atomic regions from SNP 81326 to 81926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:58,819 DEBUG Processing 273/503 atomic regions from SNP 81626 to 82226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,012 DEBUG Processing 274/503 atomic regions from SNP 81926 to 82526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,197 DEBUG Processing 275/503 atomic regions from SNP 82226 to 82826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,379 DEBUG Processing 276/503 atomic regions from SNP 82526 to 83126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,567 DEBUG Processing 277/503 atomic regions from SNP 82826 to 83426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,754 DEBUG Processing 278/503 atomic regions from SNP 83126 to 83726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:56:59,938 DEBUG Processing 279/503 atomic regions from SNP 83426 to 84026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,043 DEBUG Subchromosome time: 90.00640991330147, subchromosome SNPs: 102688 2025-01-31 09:57:00,044 DEBUG Estimated BADs: [9.44, 1.89, 15.11, 3.78, 0.94, 1.89, 0.63, 1.89, 0.47, 1.89, 5.67, 0.47, 3.78, 1.89] SNP counts: [8006, 1782, 804, 2873, 20000, 4815, 3899, 9603, 5091, 10381, 11528, 7858, 2944, 13104] SNP IDs counts: [8006, 1782, 804, 2873, 20000, 4815, 3899, 9603, 5091, 10381, 11528, 7858, 2944, 13104] Critical gap: 417054bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.50Mbp, 8.71Mbp, 9.14Mbp, 11.00Mbp, 22.69Mbp, 25.29Mbp, 27.50Mbp, 32.76Mbp, 35.88Mbp, 41.80Mbp, 47.95Mbp, 52.66Mbp, 54.26Mbp, 61.43Mbp] 2025-01-31 09:57:00,044 DEBUG chr19 time: 90.00687745958567 s 2025-01-31 09:57:00,102 DEBUG chr19: Fitting background model for 14 segments 2025-01-31 09:57:00,116 DEBUG Processing 280/503 atomic regions from SNP 83726 to 84326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,298 DEBUG Processing 281/503 atomic regions from SNP 84026 to 84626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,487 DEBUG Processing 282/503 atomic regions from SNP 84326 to 84926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,679 DEBUG Processing 283/503 atomic regions from SNP 84626 to 85226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:00,863 DEBUG Processing 284/503 atomic regions from SNP 84926 to 85526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,045 DEBUG Processing 285/503 atomic regions from SNP 85226 to 85826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,233 DEBUG Processing 286/503 atomic regions from SNP 85526 to 86126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,421 DEBUG Processing 287/503 atomic regions from SNP 85826 to 86426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,613 DEBUG Processing 288/503 atomic regions from SNP 86126 to 86726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,802 DEBUG Processing 289/503 atomic regions from SNP 86426 to 87026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:01,985 DEBUG Processing 290/503 atomic regions from SNP 86726 to 87326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,166 DEBUG Processing 291/503 atomic regions from SNP 87026 to 87626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,369 DEBUG Processing 292/503 atomic regions from SNP 87326 to 87926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,561 DEBUG Processing 293/503 atomic regions from SNP 87626 to 88226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,748 DEBUG Processing 294/503 atomic regions from SNP 87926 to 88526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:02,935 DEBUG Processing 295/503 atomic regions from SNP 88226 to 88826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,125 DEBUG Processing 296/503 atomic regions from SNP 88526 to 89126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,316 DEBUG Processing 297/503 atomic regions from SNP 88826 to 89426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,507 DEBUG Processing 298/503 atomic regions from SNP 89126 to 89726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,702 DEBUG Processing 299/503 atomic regions from SNP 89426 to 90026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:03,895 DEBUG Processing 300/503 atomic regions from SNP 89726 to 90326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,088 DEBUG Processing 301/503 atomic regions from SNP 90026 to 90626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,277 DEBUG Processing 302/503 atomic regions from SNP 90326 to 90926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,468 DEBUG Processing 303/503 atomic regions from SNP 90626 to 91226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,661 DEBUG Processing 304/503 atomic regions from SNP 90926 to 91526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:04,871 DEBUG Processing 305/503 atomic regions from SNP 91226 to 91826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,096 DEBUG Processing 306/503 atomic regions from SNP 91526 to 92126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,303 DEBUG Processing 307/503 atomic regions from SNP 91826 to 92426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,496 DEBUG Processing 308/503 atomic regions from SNP 92126 to 92726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,694 DEBUG Processing 309/503 atomic regions from SNP 92426 to 93026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:05,891 DEBUG Processing 310/503 atomic regions from SNP 92726 to 93326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,085 DEBUG Processing 311/503 atomic regions from SNP 93026 to 93626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,275 DEBUG Processing 312/503 atomic regions from SNP 93326 to 93926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,467 DEBUG Processing 313/503 atomic regions from SNP 93626 to 94226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,665 DEBUG Processing 314/503 atomic regions from SNP 93926 to 94526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:06,858 DEBUG Processing 315/503 atomic regions from SNP 94226 to 94826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,060 DEBUG Processing 316/503 atomic regions from SNP 94526 to 95126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,262 DEBUG Processing 317/503 atomic regions from SNP 94826 to 95426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,459 DEBUG Processing 318/503 atomic regions from SNP 95126 to 95726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,647 DEBUG Processing 319/503 atomic regions from SNP 95426 to 96026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:07,833 DEBUG Processing 320/503 atomic regions from SNP 95726 to 96326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,025 DEBUG Processing 321/503 atomic regions from SNP 96026 to 96626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,226 DEBUG Processing 322/503 atomic regions from SNP 96326 to 96926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,426 DEBUG Processing 323/503 atomic regions from SNP 96626 to 97226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,624 DEBUG Processing 324/503 atomic regions from SNP 96926 to 97526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,807 DEBUG Processing 325/503 atomic regions from SNP 97226 to 97826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:08,992 DEBUG Processing 326/503 atomic regions from SNP 97526 to 98126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,185 DEBUG Processing 327/503 atomic regions from SNP 97826 to 98426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,404 DEBUG Processing 328/503 atomic regions from SNP 98126 to 98726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,626 DEBUG Processing 329/503 atomic regions from SNP 98426 to 99026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:09,845 DEBUG Processing 330/503 atomic regions from SNP 98726 to 99326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,039 DEBUG Processing 331/503 atomic regions from SNP 99026 to 99626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,233 DEBUG Processing 332/503 atomic regions from SNP 99326 to 99926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,449 DEBUG Processing 333/503 atomic regions from SNP 99626 to 100226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,660 DEBUG Processing 334/503 atomic regions from SNP 99926 to 100526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:10,878 DEBUG Processing 335/503 atomic regions from SNP 100226 to 100826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,096 DEBUG Processing 336/503 atomic regions from SNP 100526 to 101126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,291 DEBUG Processing 337/503 atomic regions from SNP 100826 to 101426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,490 DEBUG Processing 338/503 atomic regions from SNP 101126 to 101726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,683 DEBUG Processing 339/503 atomic regions from SNP 101426 to 102026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:11,877 DEBUG Processing 340/503 atomic regions from SNP 101726 to 102326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,068 DEBUG Processing 341/503 atomic regions from SNP 102026 to 102626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,261 DEBUG Processing 342/503 atomic regions from SNP 102326 to 102926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,452 DEBUG Processing 343/503 atomic regions from SNP 102626 to 103226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,640 DEBUG Processing 344/503 atomic regions from SNP 102926 to 103526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:12,829 DEBUG Processing 345/503 atomic regions from SNP 103226 to 103826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,019 DEBUG Processing 346/503 atomic regions from SNP 103526 to 104126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,213 DEBUG Processing 347/503 atomic regions from SNP 103826 to 104426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,430 DEBUG Processing 348/503 atomic regions from SNP 104126 to 104726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,642 DEBUG Processing 349/503 atomic regions from SNP 104426 to 105026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:13,842 DEBUG Processing 350/503 atomic regions from SNP 104726 to 105326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,044 DEBUG Processing 351/503 atomic regions from SNP 105026 to 105626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,247 DEBUG Processing 352/503 atomic regions from SNP 105326 to 105926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,478 DEBUG Processing 353/503 atomic regions from SNP 105626 to 106226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,672 DEBUG Processing 354/503 atomic regions from SNP 105926 to 106526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:14,863 DEBUG Processing 355/503 atomic regions from SNP 106226 to 106826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,053 DEBUG Processing 356/503 atomic regions from SNP 106526 to 107126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,247 DEBUG Processing 357/503 atomic regions from SNP 106826 to 107426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,443 DEBUG Processing 358/503 atomic regions from SNP 107126 to 107726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,636 DEBUG Processing 359/503 atomic regions from SNP 107426 to 108026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:15,829 DEBUG Processing 360/503 atomic regions from SNP 107726 to 108326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,019 DEBUG Processing 361/503 atomic regions from SNP 108026 to 108626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,209 DEBUG Processing 362/503 atomic regions from SNP 108326 to 108926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,394 DEBUG Processing 363/503 atomic regions from SNP 108626 to 109226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,580 DEBUG Processing 364/503 atomic regions from SNP 108926 to 109526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,768 DEBUG Processing 365/503 atomic regions from SNP 109226 to 109826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:16,960 DEBUG Processing 366/503 atomic regions from SNP 109526 to 110126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,151 DEBUG Processing 367/503 atomic regions from SNP 109826 to 110426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,334 DEBUG Processing 368/503 atomic regions from SNP 110126 to 110726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,525 DEBUG Processing 369/503 atomic regions from SNP 110426 to 111026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,746 DEBUG Processing 370/503 atomic regions from SNP 110726 to 111326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:17,966 DEBUG Processing 371/503 atomic regions from SNP 111026 to 111626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,186 DEBUG Processing 372/503 atomic regions from SNP 111326 to 111926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,410 DEBUG Processing 373/503 atomic regions from SNP 111626 to 112226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,616 DEBUG Processing 374/503 atomic regions from SNP 111926 to 112526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:18,804 DEBUG Processing 375/503 atomic regions from SNP 112226 to 112826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,003 DEBUG Processing 376/503 atomic regions from SNP 112526 to 113126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,194 DEBUG Processing 377/503 atomic regions from SNP 112826 to 113426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,382 DEBUG Processing 378/503 atomic regions from SNP 113126 to 113726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,566 DEBUG Processing 379/503 atomic regions from SNP 113426 to 114026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,756 DEBUG Processing 380/503 atomic regions from SNP 113726 to 114326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:19,951 DEBUG Processing 381/503 atomic regions from SNP 114026 to 114626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,146 DEBUG Processing 382/503 atomic regions from SNP 114326 to 114926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,332 DEBUG Processing 383/503 atomic regions from SNP 114626 to 115226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,518 DEBUG Processing 384/503 atomic regions from SNP 114926 to 115526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,708 DEBUG Processing 385/503 atomic regions from SNP 115226 to 115826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:20,902 DEBUG Processing 386/503 atomic regions from SNP 115526 to 116126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,098 DEBUG Processing 387/503 atomic regions from SNP 115826 to 116426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,290 DEBUG Processing 388/503 atomic regions from SNP 116126 to 116726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,480 DEBUG Processing 389/503 atomic regions from SNP 116426 to 117026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,694 DEBUG Processing 390/503 atomic regions from SNP 116726 to 117326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:21,897 DEBUG Processing 391/503 atomic regions from SNP 117026 to 117626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,084 DEBUG Processing 392/503 atomic regions from SNP 117326 to 117926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,274 DEBUG Processing 393/503 atomic regions from SNP 117626 to 118226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,472 DEBUG Processing 394/503 atomic regions from SNP 117926 to 118526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,671 DEBUG Processing 395/503 atomic regions from SNP 118226 to 118826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:22,864 DEBUG Processing 396/503 atomic regions from SNP 118526 to 119126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,050 DEBUG Processing 397/503 atomic regions from SNP 118826 to 119426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,235 DEBUG Processing 398/503 atomic regions from SNP 119126 to 119726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,429 DEBUG Processing 399/503 atomic regions from SNP 119426 to 120026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,629 DEBUG Processing 400/503 atomic regions from SNP 119726 to 120326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:23,827 DEBUG Processing 401/503 atomic regions from SNP 120026 to 120626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,017 DEBUG Processing 402/503 atomic regions from SNP 120326 to 120926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,207 DEBUG Processing 403/503 atomic regions from SNP 120626 to 121226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,401 DEBUG Processing 404/503 atomic regions from SNP 120926 to 121526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,590 DEBUG Processing 405/503 atomic regions from SNP 121226 to 121826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,776 DEBUG Processing 406/503 atomic regions from SNP 121526 to 122126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:24,964 DEBUG Processing 407/503 atomic regions from SNP 121826 to 122426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,176 DEBUG Processing 408/503 atomic regions from SNP 122126 to 122726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,382 DEBUG Processing 409/503 atomic regions from SNP 122426 to 123026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,570 DEBUG Processing 410/503 atomic regions from SNP 122726 to 123326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,753 DEBUG Processing 411/503 atomic regions from SNP 123026 to 123626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:25,929 DEBUG Processing 412/503 atomic regions from SNP 123326 to 123926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,104 DEBUG Processing 413/503 atomic regions from SNP 123626 to 124226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,281 DEBUG Processing 414/503 atomic regions from SNP 123926 to 124526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,465 DEBUG Processing 415/503 atomic regions from SNP 124226 to 124826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,649 DEBUG Processing 416/503 atomic regions from SNP 124526 to 125126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:26,833 DEBUG Processing 417/503 atomic regions from SNP 124826 to 125426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,025 DEBUG Processing 418/503 atomic regions from SNP 125126 to 125726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,217 DEBUG Processing 419/503 atomic regions from SNP 125426 to 126026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,399 DEBUG Processing 420/503 atomic regions from SNP 125726 to 126326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,582 DEBUG Processing 421/503 atomic regions from SNP 126026 to 126626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,768 DEBUG Processing 422/503 atomic regions from SNP 126326 to 126926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:27,954 DEBUG Processing 423/503 atomic regions from SNP 126626 to 127226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,143 DEBUG Processing 424/503 atomic regions from SNP 126926 to 127526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,323 DEBUG Processing 425/503 atomic regions from SNP 127226 to 127826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,500 DEBUG Processing 426/503 atomic regions from SNP 127526 to 128126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,680 DEBUG Processing 427/503 atomic regions from SNP 127826 to 128426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:28,889 DEBUG Processing 428/503 atomic regions from SNP 128126 to 128726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,092 DEBUG Processing 429/503 atomic regions from SNP 128426 to 129026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,278 DEBUG Processing 430/503 atomic regions from SNP 128726 to 129326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,457 DEBUG Processing 431/503 atomic regions from SNP 129026 to 129626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,660 DEBUG Processing 432/503 atomic regions from SNP 129326 to 129926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:29,875 DEBUG Processing 433/503 atomic regions from SNP 129626 to 130226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,070 DEBUG Processing 434/503 atomic regions from SNP 129926 to 130526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,280 DEBUG Processing 435/503 atomic regions from SNP 130226 to 130826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,466 DEBUG Processing 436/503 atomic regions from SNP 130526 to 131126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,652 DEBUG Processing 437/503 atomic regions from SNP 130826 to 131426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:30,838 DEBUG Processing 438/503 atomic regions from SNP 131126 to 131726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,028 DEBUG Processing 439/503 atomic regions from SNP 131426 to 132026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,219 DEBUG Processing 440/503 atomic regions from SNP 131726 to 132326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,406 DEBUG Processing 441/503 atomic regions from SNP 132026 to 132626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,591 DEBUG Processing 442/503 atomic regions from SNP 132326 to 132926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,775 DEBUG Processing 443/503 atomic regions from SNP 132626 to 133226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:31,956 DEBUG Processing 444/503 atomic regions from SNP 132926 to 133526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,135 DEBUG Processing 445/503 atomic regions from SNP 133226 to 133826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,331 DEBUG Processing 446/503 atomic regions from SNP 133526 to 134126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,542 DEBUG Processing 447/503 atomic regions from SNP 133826 to 134426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,730 DEBUG Processing 448/503 atomic regions from SNP 134126 to 134726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:32,914 DEBUG Processing 449/503 atomic regions from SNP 134426 to 135026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,098 DEBUG Processing 450/503 atomic regions from SNP 134726 to 135326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,279 DEBUG Processing 451/503 atomic regions from SNP 135026 to 135626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,459 DEBUG Processing 452/503 atomic regions from SNP 135326 to 135926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,641 DEBUG Processing 453/503 atomic regions from SNP 135626 to 136226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:33,826 DEBUG Processing 454/503 atomic regions from SNP 135926 to 136526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,008 DEBUG Processing 455/503 atomic regions from SNP 136226 to 136826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,190 DEBUG Processing 456/503 atomic regions from SNP 136526 to 137126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,371 DEBUG Processing 457/503 atomic regions from SNP 136826 to 137426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,555 DEBUG Processing 458/503 atomic regions from SNP 137126 to 137726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,741 DEBUG Processing 459/503 atomic regions from SNP 137426 to 138026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:34,923 DEBUG Processing 460/503 atomic regions from SNP 137726 to 138326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,106 DEBUG Processing 461/503 atomic regions from SNP 138026 to 138626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,306 DEBUG Processing 462/503 atomic regions from SNP 138326 to 138926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,493 DEBUG Processing 463/503 atomic regions from SNP 138626 to 139226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,676 DEBUG Processing 464/503 atomic regions from SNP 138926 to 139526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:35,864 DEBUG Processing 465/503 atomic regions from SNP 139226 to 139826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,051 DEBUG Processing 466/503 atomic regions from SNP 139526 to 140126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,236 DEBUG Processing 467/503 atomic regions from SNP 139826 to 140426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,415 DEBUG Processing 468/503 atomic regions from SNP 140126 to 140726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,593 DEBUG Processing 469/503 atomic regions from SNP 140426 to 141026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,772 DEBUG Processing 470/503 atomic regions from SNP 140726 to 141326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:36,953 DEBUG Processing 471/503 atomic regions from SNP 141026 to 141626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,132 DEBUG Processing 472/503 atomic regions from SNP 141326 to 141926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,317 DEBUG Processing 473/503 atomic regions from SNP 141626 to 142226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,492 DEBUG Processing 474/503 atomic regions from SNP 141926 to 142526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,676 DEBUG Processing 475/503 atomic regions from SNP 142226 to 142826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:37,878 DEBUG Processing 476/503 atomic regions from SNP 142526 to 143126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,054 DEBUG Processing 477/503 atomic regions from SNP 142826 to 143426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,237 DEBUG Processing 478/503 atomic regions from SNP 143126 to 143726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,420 DEBUG Processing 479/503 atomic regions from SNP 143426 to 144026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,600 DEBUG Processing 480/503 atomic regions from SNP 143726 to 144326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,778 DEBUG Processing 481/503 atomic regions from SNP 144026 to 144626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:38,959 DEBUG Processing 482/503 atomic regions from SNP 144326 to 144926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,140 DEBUG Processing 483/503 atomic regions from SNP 144626 to 145226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,317 DEBUG Processing 484/503 atomic regions from SNP 144926 to 145526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,492 DEBUG Processing 485/503 atomic regions from SNP 145226 to 145826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,669 DEBUG Processing 486/503 atomic regions from SNP 145526 to 146126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:39,850 DEBUG Processing 487/503 atomic regions from SNP 145826 to 146426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,031 DEBUG Processing 488/503 atomic regions from SNP 146126 to 146726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,211 DEBUG Processing 489/503 atomic regions from SNP 146426 to 147026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,390 DEBUG Processing 490/503 atomic regions from SNP 146726 to 147326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,567 DEBUG Processing 491/503 atomic regions from SNP 147026 to 147626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,744 DEBUG Processing 492/503 atomic regions from SNP 147326 to 147926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:40,924 DEBUG Processing 493/503 atomic regions from SNP 147626 to 148226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,111 DEBUG Processing 494/503 atomic regions from SNP 147926 to 148526 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,295 DEBUG Processing 495/503 atomic regions from SNP 148226 to 148826 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,475 DEBUG Processing 496/503 atomic regions from SNP 148526 to 149126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,652 DEBUG Processing 497/503 atomic regions from SNP 148826 to 149426 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:41,832 DEBUG Processing 498/503 atomic regions from SNP 149126 to 149726 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,011 DEBUG Processing 499/503 atomic regions from SNP 149426 to 150026 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,193 DEBUG Processing 500/503 atomic regions from SNP 149726 to 150326 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,375 DEBUG Processing 501/503 atomic regions from SNP 150026 to 150626 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,556 DEBUG Processing 502/503 atomic regions from SNP 150326 to 150926 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,733 DEBUG Processing 503/503 atomic regions from SNP 150626 to 151226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:57:42,848 DEBUG Unique SNPs positions in subchromosome 1: 151227 2025-01-31 09:57:43,644 DEBUG Subchromosome time: 131.2995002269745, subchromosome SNPs: 151227 2025-01-31 09:57:43,644 DEBUG Estimated BADs: [1.42, 0.47, 2.85, 7.12, 1.42, 7.12, 1.42, 5.69, 2.85, 1.42, 2.85, 0.71] SNP counts: [40604, 7222, 4579, 4930, 1738, 764, 38341, 2159, 12290, 9422, 20300, 8878] SNP IDs counts: [40604, 7222, 4579, 4930, 1738, 764, 38341, 2159, 12290, 9422, 20300, 8878] Critical gap: 517157bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 27.11Mbp, 31.63Mbp, 34.22Mbp, 36.81Mbp, 37.88Mbp, 38.28Mbp, 60.48Mbp, 61.62Mbp, 68.23Mbp, 73.70Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 09:57:43,644 DEBUG chr18 time: 131.29990987479687 s 2025-01-31 09:57:43,722 DEBUG chr18: Fitting background model for 12 segments 2025-01-31 09:57:59,338 DEBUG Results of fit_background_model emitted. 2025-01-31 09:57:59,453 INFO Signal to noise fit: SPOT=0.44±0.17 2025-01-31 09:57:59,459 INFO Found 2 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 09:57:59,508 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:57:59,508 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 09:58:03,441 DEBUG chr14: Fitting background model for 1 segments 2025-01-31 09:58:03,571 DEBUG chr13: Fitting background model for 1 segments 2025-01-31 09:58:03,844 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 09:58:03,916 INFO Signal to noise fit: SPOT=0.44±0.17 2025-01-31 09:58:03,923 INFO Final SPOT score: 0.44±0.17. Refitted 2 segments. 2025-01-31 09:58:03,969 INFO Estimating per-bp parameters of background model 2025-01-31 09:58:03,976 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 09:58:03,976 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 09:58:11,158 DEBUG chr4:3050000-8533251: Successfully fit background model for 4,616,338 bp. Use segment r for 0 bp 2025-01-31 09:58:11,362 DEBUG chr3:3000000-8882251: Successfully fit background model for 5,090,445 bp. Use segment r for 0 bp 2025-01-31 09:58:11,513 DEBUG chr3:8882251-10185751: Successfully fit background model for 1,198,105 bp. Use segment r for 0 bp 2025-01-31 09:58:11,638 DEBUG chr2:3051000-7584251: Successfully fit background model for 4,256,661 bp. Use segment r for 0 bp 2025-01-31 09:58:12,291 DEBUG chr4:8533251-16268501: Successfully fit background model for 6,988,642 bp. Use segment r for 0 bp 2025-01-31 09:58:12,371 DEBUG chrX:3055000-7557751: Successfully fit background model for 2,010,197 bp. Use segment r for 1,515 bp 2025-01-31 09:58:12,424 DEBUG chrX:7557751-7958751: Successfully fit background model for 392,146 bp. Use segment r for 0 bp 2025-01-31 09:58:12,570 DEBUG chr4:16268501-18846251: Successfully fit background model for 2,209,998 bp. Use segment r for 0 bp 2025-01-31 09:58:13,080 DEBUG chr3:10185751-19162251: Successfully fit background model for 7,561,098 bp. Use segment r for 0 bp 2025-01-31 09:58:13,143 DEBUG chr1:3000500-9535751: Successfully fit background model for 5,692,665 bp. Use segment r for 0 bp 2025-01-31 09:58:13,192 DEBUG chrX:7958751-14353751: Successfully fit background model for 5,633,838 bp. Use segment r for 0 bp 2025-01-31 09:58:13,197 DEBUG chr3:19162251-20034251: Successfully fit background model for 799,735 bp. Use segment r for 0 bp 2025-01-31 09:58:13,206 DEBUG chr1:9535751-9966751: Successfully fit background model for 415,467 bp. Use segment r for 0 bp 2025-01-31 09:58:13,271 DEBUG chr2:7584251-18025251: Successfully fit background model for 9,445,802 bp. Use segment r for 0 bp 2025-01-31 09:58:13,876 DEBUG chr1:9966751-16088251: Successfully fit background model for 5,505,660 bp. Use segment r for 0 bp 2025-01-31 09:58:13,895 DEBUG chr1:16088251-16139251: Successfully fit background model for 49,789 bp. Use segment r for 0 bp 2025-01-31 09:58:14,034 DEBUG chr2:18025251-24916751: Successfully fit background model for 6,141,700 bp. Use segment r for 0 bp 2025-01-31 09:58:14,079 DEBUG chr5:3005500-20871251: Successfully fit background model for 14,470,328 bp. Use segment r for 5,322 bp 2025-01-31 09:58:14,170 DEBUG chr3:20034251-28392751: Successfully fit background model for 7,405,525 bp. Use segment r for 0 bp 2025-01-31 09:58:14,249 DEBUG chr4:18846251-32654251: Successfully fit background model for 12,320,799 bp. Use segment r for 0 bp 2025-01-31 09:58:14,391 DEBUG chr5:20871251-23386751: Successfully fit background model for 2,295,136 bp. Use segment r for 0 bp 2025-01-31 09:58:14,496 DEBUG chr4:32654251-34878251: Successfully fit background model for 2,092,498 bp. Use segment r for 0 bp 2025-01-31 09:58:14,606 DEBUG chr5:23386751-25497251: Successfully fit background model for 2,009,531 bp. Use segment r for 0 bp 2025-01-31 09:58:15,077 DEBUG chr4:34878251-40134751: Successfully fit background model for 4,668,881 bp. Use segment r for 0 bp 2025-01-31 09:58:15,165 DEBUG chr5:25497251-30406751: Successfully fit background model for 4,358,895 bp. Use segment r for 0 bp 2025-01-31 09:58:15,259 DEBUG chr5:30406751-31242251: Successfully fit background model for 812,078 bp. Use segment r for 0 bp 2025-01-31 09:58:15,262 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 09:58:15,378 DEBUG chr2:24916751-36237251: Successfully fit background model for 10,999,660 bp. Use segment r for 0 bp 2025-01-31 09:58:15,408 DEBUG chrX:14353751-26899501: Successfully fit background model for 8,934,478 bp. Use segment r for 8,163 bp 2025-01-31 09:58:15,474 DEBUG chr2:36237251-37003501: Successfully fit background model for 635,118 bp. Use segment r for 0 bp 2025-01-31 09:58:15,662 DEBUG chr1:16139251-30864751: Successfully fit background model for 13,160,988 bp. Use segment r for 0 bp 2025-01-31 09:58:15,703 DEBUG chr1:30864751-30987251: Successfully fit background model for 107,161 bp. Use segment r for 0 bp 2025-01-31 09:58:15,706 DEBUG chr2:37003501-39394251: Successfully fit background model for 2,234,556 bp. Use segment r for 0 bp 2025-01-31 09:58:15,808 DEBUG chr3:28392751-42287751: Successfully fit background model for 12,689,049 bp. Use segment r for 0 bp 2025-01-31 09:58:15,886 DEBUG chr4:42706000-48689251: Successfully fit background model for 5,676,841 bp. Use segment r for 0 bp 2025-01-31 09:58:15,977 DEBUG chr1:30987251-33520251: Successfully fit background model for 2,225,216 bp. Use segment r for 0 bp 2025-01-31 09:58:16,086 DEBUG chr5:31242251-39144751: Successfully fit background model for 7,515,727 bp. Use segment r for 0 bp 2025-01-31 09:58:16,211 DEBUG chr2:39394251-44536251: Successfully fit background model for 4,702,745 bp. Use segment r for 0 bp 2025-01-31 09:58:16,287 DEBUG chr4:48689251-52727751: Successfully fit background model for 3,558,513 bp. Use segment r for 0 bp 2025-01-31 09:58:16,315 DEBUG chr2:44536251-45501751: Successfully fit background model for 925,112 bp. Use segment r for 0 bp 2025-01-31 09:58:16,406 DEBUG chr5:39144751-42536251: Successfully fit background model for 3,040,085 bp. Use segment r for 0 bp 2025-01-31 09:58:16,576 DEBUG chr2:45501751-48020251: Successfully fit background model for 2,280,772 bp. Use segment r for 0 bp 2025-01-31 09:58:16,627 DEBUG chr1:33520251-39357251: Successfully fit background model for 5,565,498 bp. Use segment r for 0 bp 2025-01-31 09:58:16,756 DEBUG chr5:42536251-46084251: Successfully fit background model for 3,208,644 bp. Use segment r for 0 bp 2025-01-31 09:58:16,895 DEBUG chrX:31132500-40505251: Successfully fit background model for 4,143,786 bp. Use segment r for 10,624 bp 2025-01-31 09:58:17,086 DEBUG chr1:39357251-44101251: Successfully fit background model for 4,541,128 bp. Use segment r for 0 bp 2025-01-31 09:58:17,108 DEBUG chr1:44101251-44174251: Successfully fit background model for 71,846 bp. Use segment r for 0 bp 2025-01-31 09:58:17,132 DEBUG chr2:48020251-53391751: Successfully fit background model for 5,064,909 bp. Use segment r for 0 bp 2025-01-31 09:58:17,267 DEBUG chr5:46084251-51079001: Successfully fit background model for 4,570,798 bp. Use segment r for 0 bp 2025-01-31 09:58:17,292 DEBUG chr3:42287751-51059501: Successfully fit background model for 7,743,847 bp. Use segment r for 30,556 bp 2025-01-31 09:58:17,377 DEBUG chr3:51059501-51660751: Successfully fit background model for 575,814 bp. Use segment r for 0 bp 2025-01-31 09:58:17,498 DEBUG chr2:53391751-57071751: Successfully fit background model for 3,158,829 bp. Use segment r for 0 bp 2025-01-31 09:58:17,553 DEBUG chr2:57071751-57516751: Successfully fit background model for 413,993 bp. Use segment r for 0 bp 2025-01-31 09:58:17,571 DEBUG chr5:51079001-54347751: Successfully fit background model for 3,138,684 bp. Use segment r for 0 bp 2025-01-31 09:58:17,603 DEBUG chrX:40505251-48088751: Successfully fit background model for 6,604,285 bp. Use segment r for 0 bp 2025-01-31 09:58:18,019 DEBUG chr1:44174251-52098751: Successfully fit background model for 6,891,820 bp. Use segment r for 0 bp 2025-01-31 09:58:18,180 DEBUG chrX:48088751-54270501: Successfully fit background model for 5,408,604 bp. Use segment r for 0 bp 2025-01-31 09:58:18,381 DEBUG chr4:52727751-64156751: Successfully fit background model for 9,133,619 bp. Use segment r for 7,960 bp 2025-01-31 09:58:18,676 DEBUG chr1:52098751-58335751: Successfully fit background model for 5,747,769 bp. Use segment r for 0 bp 2025-01-31 09:58:18,933 DEBUG chr2:57516751-69778251: Successfully fit background model for 11,414,547 bp. Use segment r for 0 bp 2025-01-31 09:58:19,097 DEBUG chr5:54347751-63410501: Successfully fit background model for 8,018,770 bp. Use segment r for 578 bp 2025-01-31 09:58:19,311 DEBUG chr2:69778251-73491251: Successfully fit background model for 3,609,507 bp. Use segment r for 0 bp 2025-01-31 09:58:19,376 DEBUG chr1:58335751-64607251: Successfully fit background model for 5,879,851 bp. Use segment r for 0 bp 2025-01-31 09:58:19,457 DEBUG chr1:64607251-65221751: Successfully fit background model for 585,050 bp. Use segment r for 0 bp 2025-01-31 09:58:19,534 DEBUG chr3:51660751-69124251: Successfully fit background model for 15,813,029 bp. Use segment r for 0 bp 2025-01-31 09:58:19,603 DEBUG chr5:63410501-68577001: Successfully fit background model for 4,863,951 bp. Use segment r for 0 bp 2025-01-31 09:58:19,861 DEBUG chr5:68577001-71243751: Successfully fit background model for 2,369,426 bp. Use segment r for 0 bp 2025-01-31 09:58:20,135 DEBUG chr2:73491251-80863751: Successfully fit background model for 6,992,855 bp. Use segment r for 0 bp 2025-01-31 09:58:20,189 DEBUG chrX:55164500-72905751: Successfully fit background model for 14,970,560 bp. Use segment r for 0 bp 2025-01-31 09:58:20,232 DEBUG chr1:65221751-72203251: Successfully fit background model for 6,435,393 bp. Use segment r for 0 bp 2025-01-31 09:58:20,359 DEBUG chrX:72905751-74225251: Successfully fit background model for 1,090,334 bp. Use segment r for 0 bp 2025-01-31 09:58:20,451 DEBUG chr1:72203251-74274751: Successfully fit background model for 1,966,279 bp. Use segment r for 0 bp 2025-01-31 09:58:20,507 DEBUG chr2:80863751-84648251: Successfully fit background model for 3,215,727 bp. Use segment r for 0 bp 2025-01-31 09:58:20,581 DEBUG chr1:74274751-75489751: Successfully fit background model for 1,118,660 bp. Use segment r for 0 bp 2025-01-31 09:58:20,584 DEBUG chr5:71243751-77939751: Successfully fit background model for 6,294,840 bp. Use segment r for 0 bp 2025-01-31 09:58:20,598 DEBUG chr2:84648251-85369251: Successfully fit background model for 677,573 bp. Use segment r for 0 bp 2025-01-31 09:58:20,698 DEBUG chrX:74225251-77433251: Successfully fit background model for 2,488,435 bp. Use segment r for 0 bp 2025-01-31 09:58:21,030 DEBUG chr2:85369251-89373751: Successfully fit background model for 3,500,853 bp. Use segment r for 0 bp 2025-01-31 09:58:21,187 DEBUG chr2:89373751-90844751: Successfully fit background model for 1,125,131 bp. Use segment r for 0 bp 2025-01-31 09:58:21,373 DEBUG chr3:69124251-84008751: Successfully fit background model for 13,429,825 bp. Use segment r for 0 bp 2025-01-31 09:58:21,628 DEBUG chr2:90844751-95060251: Successfully fit background model for 4,068,662 bp. Use segment r for 0 bp 2025-01-31 09:58:21,653 DEBUG chr4:64156751-81793251: Successfully fit background model for 15,603,136 bp. Use segment r for 12,422 bp 2025-01-31 09:58:21,752 DEBUG chr3:84008751-87791751: Successfully fit background model for 3,605,266 bp. Use segment r for 0 bp 2025-01-31 09:58:21,916 DEBUG chr1:75489751-86140751: Successfully fit background model for 9,385,408 bp. Use segment r for 0 bp 2025-01-31 09:58:21,982 DEBUG chr1:86140751-86536751: Successfully fit background model for 384,578 bp. Use segment r for 0 bp 2025-01-31 09:58:22,011 DEBUG chr3:87791751-90364751: Successfully fit background model for 2,439,503 bp. Use segment r for 0 bp 2025-01-31 09:58:22,159 DEBUG chr5:77939751-88042751: Successfully fit background model for 9,013,832 bp. Use segment r for 5,203 bp 2025-01-31 09:58:22,182 DEBUG chr2:95060251-100900501: Successfully fit background model for 4,836,222 bp. Use segment r for 0 bp 2025-01-31 09:58:22,266 DEBUG chrX:77433251-91311251: Successfully fit background model for 12,006,304 bp. Use segment r for 0 bp 2025-01-31 09:58:22,401 DEBUG chr4:81793251-89535251: Successfully fit background model for 7,092,304 bp. Use segment r for 0 bp 2025-01-31 09:58:22,607 DEBUG chr3:90364751-94308751: Successfully fit background model for 3,032,342 bp. Use segment r for 184 bp 2025-01-31 09:58:22,638 DEBUG chr1:86536751-92826751: Successfully fit background model for 6,024,837 bp. Use segment r for 0 bp 2025-01-31 09:58:22,720 DEBUG chrX:91311251-95948751: Successfully fit background model for 3,687,682 bp. Use segment r for 0 bp 2025-01-31 09:58:22,732 DEBUG chr4:89535251-92683501: Successfully fit background model for 2,759,988 bp. Use segment r for 0 bp 2025-01-31 09:58:22,754 DEBUG chr1:92826751-93838751: Successfully fit background model for 985,513 bp. Use segment r for 0 bp 2025-01-31 09:58:22,833 DEBUG chr3:94308751-96478751: Successfully fit background model for 1,985,539 bp. Use segment r for 0 bp 2025-01-31 09:58:22,860 DEBUG chr2:100900501-107872251: Successfully fit background model for 6,599,528 bp. Use segment r for 0 bp 2025-01-31 09:58:23,002 DEBUG chrX:95948751-98903251: Successfully fit background model for 2,520,124 bp. Use segment r for 0 bp 2025-01-31 09:58:23,173 DEBUG chr4:92683501-96847751: Successfully fit background model for 3,748,756 bp. Use segment r for 0 bp 2025-01-31 09:58:23,260 DEBUG chr2:107872251-112237751: Successfully fit background model for 3,829,863 bp. Use segment r for 0 bp 2025-01-31 09:58:23,504 DEBUG chr2:112237751-114778501: Successfully fit background model for 2,355,628 bp. Use segment r for 0 bp 2025-01-31 09:58:23,656 DEBUG chr5:88042751-97625751: Successfully fit background model for 6,765,804 bp. Use segment r for 10,532 bp 2025-01-31 09:58:23,727 DEBUG chrX:98903251-105924251: Successfully fit background model for 6,315,725 bp. Use segment r for 0 bp 2025-01-31 09:58:23,888 DEBUG chr5:97625751-99974251: Successfully fit background model for 2,222,157 bp. Use segment r for 0 bp 2025-01-31 09:58:23,889 DEBUG chr2:114778501-118651251: Successfully fit background model for 3,666,151 bp. Use segment r for 0 bp 2025-01-31 09:58:24,126 DEBUG chr3:96478751-107329751: Successfully fit background model for 10,011,377 bp. Use segment r for 0 bp 2025-01-31 09:58:24,170 DEBUG chrX:105924251-110809751: Successfully fit background model for 4,192,743 bp. Use segment r for 0 bp 2025-01-31 09:58:24,190 DEBUG chr1:93838751-105797751: Successfully fit background model for 10,429,549 bp. Use segment r for 0 bp 2025-01-31 09:58:24,228 DEBUG chr5:99974251-103646751: Successfully fit background model for 3,449,643 bp. Use segment r for 0 bp 2025-01-31 09:58:24,273 DEBUG chr3:107329751-108549251: Successfully fit background model for 1,186,499 bp. Use segment r for 0 bp 2025-01-31 09:58:24,284 DEBUG chr2:118651251-122869251: Successfully fit background model for 4,026,661 bp. Use segment r for 0 bp 2025-01-31 09:58:24,329 DEBUG chr4:96847751-106783751: Successfully fit background model for 9,331,793 bp. Use segment r for 0 bp 2025-01-31 09:58:24,403 DEBUG chr2:122869251-123985751: Successfully fit background model for 990,303 bp. Use segment r for 0 bp 2025-01-31 09:58:24,405 DEBUG chr1:105797751-107785751: Successfully fit background model for 1,828,225 bp. Use segment r for 0 bp 2025-01-31 09:58:24,459 DEBUG chr3:108549251-110431251: Successfully fit background model for 1,747,202 bp. Use segment r for 0 bp 2025-01-31 09:58:24,672 DEBUG chr4:106783751-110338251: Successfully fit background model for 3,368,869 bp. Use segment r for 0 bp 2025-01-31 09:58:24,692 DEBUG chr2:123985751-127052251: Successfully fit background model for 2,889,597 bp. Use segment r for 0 bp 2025-01-31 09:58:24,943 DEBUG chr3:110431251-114869251: Successfully fit background model for 3,670,461 bp. Use segment r for 0 bp 2025-01-31 09:58:25,072 DEBUG chr2:127052251-131158751: Successfully fit background model for 3,950,425 bp. Use segment r for 0 bp 2025-01-31 09:58:25,187 DEBUG chr4:110338251-113854501: Successfully fit background model for 3,078,215 bp. Use segment r for 5,432 bp 2025-01-31 09:58:25,237 DEBUG chr3:114869251-117877751: Successfully fit background model for 2,808,786 bp. Use segment r for 0 bp 2025-01-31 09:58:25,313 DEBUG chr4:113854501-115037251: Successfully fit background model for 1,086,975 bp. Use segment r for 0 bp 2025-01-31 09:58:25,374 DEBUG chr5:103646751-113723251: Successfully fit background model for 9,304,058 bp. Use segment r for 0 bp 2025-01-31 09:58:25,564 DEBUG chr5:113723251-115561251: Successfully fit background model for 1,788,028 bp. Use segment r for 0 bp 2025-01-31 09:58:25,567 DEBUG chr3:117877751-121163251: Successfully fit background model for 3,033,639 bp. Use segment r for 0 bp 2025-01-31 09:58:25,648 DEBUG chr2:131158751-137326251: Successfully fit background model for 5,797,501 bp. Use segment r for 0 bp 2025-01-31 09:58:25,677 DEBUG chr1:107785751-118310251: Successfully fit background model for 9,152,483 bp. Use segment r for 0 bp 2025-01-31 09:58:25,722 DEBUG chr4:115037251-119222001: Successfully fit background model for 3,856,898 bp. Use segment r for 0 bp 2025-01-31 09:58:25,833 DEBUG chr2:137326251-139128251: Successfully fit background model for 1,651,183 bp. Use segment r for 0 bp 2025-01-31 09:58:25,877 DEBUG chr1:118310251-120093251: Successfully fit background model for 1,733,809 bp. Use segment r for 0 bp 2025-01-31 09:58:26,011 DEBUG chr5:115561251-120088251: Successfully fit background model for 4,432,376 bp. Use segment r for 0 bp 2025-01-31 09:58:26,172 DEBUG chr1:120093251-122893251: Successfully fit background model for 2,602,468 bp. Use segment r for 0 bp 2025-01-31 09:58:26,451 DEBUG chr1:122893251-125428251: Successfully fit background model for 2,330,211 bp. Use segment r for 0 bp 2025-01-31 09:58:26,473 DEBUG chrX:110809751-124238001: Successfully fit background model for 10,557,269 bp. Use segment r for 6,937 bp 2025-01-31 09:58:26,512 DEBUG chr5:120088251-125433251: Successfully fit background model for 5,119,749 bp. Use segment r for 0 bp 2025-01-31 09:58:26,910 DEBUG chr5:125433251-129713251: Successfully fit background model for 4,093,200 bp. Use segment r for 0 bp 2025-01-31 09:58:26,967 DEBUG chr5:129713251-130142251: Successfully fit background model for 368,565 bp. Use segment r for 0 bp 2025-01-31 09:58:26,974 DEBUG chr1:125428251-130689751: Successfully fit background model for 4,912,354 bp. Use segment r for 0 bp 2025-01-31 09:58:27,182 DEBUG chr4:119222001-131718251: Successfully fit background model for 11,161,240 bp. Use segment r for 0 bp 2025-01-31 09:58:27,198 DEBUG chr2:139128251-150903751: Successfully fit background model for 10,904,116 bp. Use segment r for 0 bp 2025-01-31 09:58:27,373 DEBUG chr5:130142251-134138251: Successfully fit background model for 3,831,458 bp. Use segment r for 0 bp 2025-01-31 09:58:27,522 DEBUG chr1:130689751-136322751: Successfully fit background model for 5,481,428 bp. Use segment r for 0 bp 2025-01-31 09:58:27,623 DEBUG chr4:131718251-136014751: Successfully fit background model for 4,180,478 bp. Use segment r for 0 bp 2025-01-31 09:58:27,702 DEBUG chrX:126011000-134013751: Successfully fit background model for 6,895,537 bp. Use segment r for 1,251 bp 2025-01-31 09:58:27,743 DEBUG chr3:121163251-139194251: Successfully fit background model for 16,772,465 bp. Use segment r for 0 bp 2025-01-31 09:58:27,840 DEBUG chr1:136322751-139600251: Successfully fit background model for 3,063,316 bp. Use segment r for 0 bp 2025-01-31 09:58:28,169 DEBUG chr4:136014751-141722251: Successfully fit background model for 5,589,568 bp. Use segment r for 0 bp 2025-01-31 09:58:28,181 DEBUG chr3:139194251-141981251: Successfully fit background model for 2,494,410 bp. Use segment r for 46,686 bp 2025-01-31 09:58:28,237 DEBUG chr1:139600251-143701751: Successfully fit background model for 3,491,671 bp. Use segment r for 0 bp 2025-01-31 09:58:28,330 DEBUG chr1:143701751-144410251: Successfully fit background model for 615,425 bp. Use segment r for 0 bp 2025-01-31 09:58:28,368 DEBUG chr2:150903751-158517751: Successfully fit background model for 7,042,808 bp. Use segment r for 1,965 bp 2025-01-31 09:58:28,491 DEBUG chr5:134138251-144094251: Successfully fit background model for 9,410,049 bp. Use segment r for 0 bp 2025-01-31 09:58:28,701 DEBUG chr3:141981251-146918251: Successfully fit background model for 4,687,441 bp. Use segment r for 0 bp 2025-01-31 09:58:28,756 DEBUG chr1:144410251-148336501: Successfully fit background model for 3,451,679 bp. Use segment r for 0 bp 2025-01-31 09:58:28,800 DEBUG chr2:158517751-163258251: Successfully fit background model for 4,531,930 bp. Use segment r for 0 bp 2025-01-31 09:58:29,022 DEBUG chr1:148336501-151066251: Successfully fit background model for 2,462,037 bp. Use segment r for 0 bp 2025-01-31 09:58:29,051 DEBUG chr4:141722251-147842751: Successfully fit background model for 3,889,699 bp. Use segment r for 1,389 bp 2025-01-31 09:58:29,157 DEBUG chr3:146918251-151760001: Successfully fit background model for 4,567,014 bp. Use segment r for 0 bp 2025-01-31 09:58:29,214 DEBUG chr5:144094251-151834684: Successfully fit background model for 7,058,937 bp. Use segment r for 0 bp 2025-01-31 09:58:29,241 DEBUG chr2:163258251-168048251: Successfully fit background model for 4,616,770 bp. Use segment r for 0 bp 2025-01-31 09:58:29,456 DEBUG chr3:151760001-154745251: Successfully fit background model for 2,833,181 bp. Use segment r for 0 bp 2025-01-31 09:58:29,645 DEBUG chr2:168048251-172287751: Successfully fit background model for 4,119,963 bp. Use segment r for 0 bp 2025-01-31 09:58:29,916 DEBUG chr2:172287751-175179501: Successfully fit background model for 2,668,472 bp. Use segment r for 0 bp 2025-01-31 09:58:29,980 DEBUG chr3:154745251-160039680: Successfully fit background model for 4,673,639 bp. Use segment r for 0 bp 2025-01-31 09:58:30,207 DEBUG chr2:176700000-179822251: Successfully fit background model for 1,931,283 bp. Use segment r for 0 bp 2025-01-31 09:58:30,242 DEBUG chr4:147842751-156508116: Successfully fit background model for 8,246,472 bp. Use segment r for 0 bp 2025-01-31 09:58:30,439 DEBUG chr2:179822251-182113224: Successfully fit background model for 2,101,474 bp. Use segment r for 0 bp 2025-01-31 09:58:32,316 DEBUG chr1:151066251-171030751: Successfully fit background model for 18,784,278 bp. Use segment r for 0 bp 2025-01-31 09:58:32,396 DEBUG chr1:171030751-171331751: Successfully fit background model for 274,874 bp. Use segment r for 0 bp 2025-01-31 09:58:32,515 DEBUG chr1:171331751-172186251: Successfully fit background model for 793,412 bp. Use segment r for 0 bp 2025-01-31 09:58:33,266 DEBUG chr1:172186251-178290251: Successfully fit background model for 5,514,330 bp. Use segment r for 0 bp 2025-01-31 09:58:33,552 DEBUG chr1:178290251-181254751: Successfully fit background model for 2,863,288 bp. Use segment r for 0 bp 2025-01-31 09:58:34,904 DEBUG chr1:181254751-190818251: Successfully fit background model for 9,078,490 bp. Use segment r for 0 bp 2025-01-31 09:58:35,035 DEBUG chr1:190818251-191925251: Successfully fit background model for 1,073,611 bp. Use segment r for 0 bp 2025-01-31 09:58:35,380 DEBUG chr1:191925251-195471971: Successfully fit background model for 3,185,937 bp. Use segment r for 0 bp 2025-01-31 09:58:37,671 DEBUG chrX:134013751-171031299: Successfully fit background model for 29,809,141 bp. Use segment r for 8,644 bp 2025-01-31 10:00:03,769 DEBUG chr6:3050000-9309751: Successfully fit background model for 5,567,551 bp. Use segment r for 0 bp 2025-01-31 10:00:04,433 DEBUG chr7:3004000-3578251: Successfully fit background model for 428,387 bp. Use segment r for 0 bp 2025-01-31 10:00:04,686 DEBUG chr7:3578251-5128251: Successfully fit background model for 1,239,073 bp. Use segment r for 7,317 bp 2025-01-31 10:00:04,757 DEBUG chr7:5128251-5763501: Successfully fit background model for 461,911 bp. Use segment r for 0 bp 2025-01-31 10:00:04,978 DEBUG chr7:5763501-7299751: Successfully fit background model for 1,293,670 bp. Use segment r for 1,358 bp 2025-01-31 10:00:05,905 DEBUG chr7:7299751-12921251: Successfully fit background model for 2,176,418 bp. Use segment r for 15,464 bp 2025-01-31 10:00:05,932 DEBUG chr7:12921251-13065251: Successfully fit background model for 137,673 bp. Use segment r for 0 bp 2025-01-31 10:00:06,385 DEBUG chr7:13065251-15916751: Successfully fit background model for 1,763,371 bp. Use segment r for 2,129 bp 2025-01-31 10:00:06,503 DEBUG chr7:15916751-17098251: Successfully fit background model for 1,146,173 bp. Use segment r for 0 bp 2025-01-31 10:00:06,786 DEBUG chr7:17098251-18989751: Successfully fit background model for 1,353,869 bp. Use segment r for 3,776 bp 2025-01-31 10:00:06,893 DEBUG chr7:18989751-20073001: Successfully fit background model for 1,031,909 bp. Use segment r for 0 bp 2025-01-31 10:00:07,112 DEBUG chr7:22771000-24080251: Successfully fit background model for 640,810 bp. Use segment r for 3,171 bp 2025-01-31 10:00:07,199 DEBUG chr6:9309751-28202251: Successfully fit background model for 16,717,610 bp. Use segment r for 138 bp 2025-01-31 10:00:07,294 DEBUG chr7:24080251-25930251: Successfully fit background model for 1,737,367 bp. Use segment r for 0 bp 2025-01-31 10:00:07,415 DEBUG chr7:25930251-27146001: Successfully fit background model for 948,925 bp. Use segment r for 0 bp 2025-01-31 10:00:07,820 DEBUG chr6:28202251-35243251: Successfully fit background model for 6,739,811 bp. Use segment r for 0 bp 2025-01-31 10:00:07,836 DEBUG chr7:27146001-31074751: Successfully fit background model for 3,697,874 bp. Use segment r for 0 bp 2025-01-31 10:00:08,058 DEBUG chr6:35243251-37842751: Successfully fit background model for 2,383,353 bp. Use segment r for 0 bp 2025-01-31 10:00:08,197 DEBUG chr6:37842751-39373751: Successfully fit background model for 1,489,877 bp. Use segment r for 0 bp 2025-01-31 10:00:08,203 DEBUG chr7:31074751-33719501: Successfully fit background model for 1,037,008 bp. Use segment r for 39,310 bp 2025-01-31 10:00:08,428 DEBUG chr7:33719501-35905751: Successfully fit background model for 2,056,822 bp. Use segment r for 0 bp 2025-01-31 10:00:08,677 DEBUG chr6:39373751-44233001: Successfully fit background model for 4,346,976 bp. Use segment r for 0 bp 2025-01-31 10:00:08,764 DEBUG chr10:3102000-5778751: Successfully fit background model for 2,452,836 bp. Use segment r for 0 bp 2025-01-31 10:00:08,777 DEBUG chr10:5778751-5845251: Successfully fit background model for 64,837 bp. Use segment r for 0 bp 2025-01-31 10:00:08,953 DEBUG chr7:35905751-39554251: Successfully fit background model for 2,674,047 bp. Use segment r for 233 bp 2025-01-31 10:00:08,966 DEBUG chr10:5845251-7608251: Successfully fit background model for 1,468,819 bp. Use segment r for 0 bp 2025-01-31 10:00:08,979 DEBUG chr6:44233001-47593751: Successfully fit background model for 3,037,079 bp. Use segment r for 0 bp 2025-01-31 10:00:09,326 DEBUG chr6:47593751-51497251: Successfully fit background model for 3,558,826 bp. Use segment r for 0 bp 2025-01-31 10:00:09,473 DEBUG chr7:39554251-43113501: Successfully fit background model for 2,982,882 bp. Use segment r for 14,823 bp 2025-01-31 10:00:09,604 DEBUG chr7:43113501-44463751: Successfully fit background model for 1,254,236 bp. Use segment r for 0 bp 2025-01-31 10:00:09,724 DEBUG chr7:44463751-45682251: Successfully fit background model for 1,195,148 bp. Use segment r for 0 bp 2025-01-31 10:00:09,871 DEBUG chr7:45682251-47173251: Successfully fit background model for 1,461,148 bp. Use segment r for 0 bp 2025-01-31 10:00:09,915 DEBUG chr6:51497251-57674751: Successfully fit background model for 5,824,387 bp. Use segment r for 0 bp 2025-01-31 10:00:10,005 DEBUG chr7:47173251-48374251: Successfully fit background model for 953,694 bp. Use segment r for 0 bp 2025-01-31 10:00:10,179 DEBUG chr7:48374251-50040751: Successfully fit background model for 1,574,702 bp. Use segment r for 0 bp 2025-01-31 10:00:10,926 DEBUG chr7:50040751-55368001: Successfully fit background model for 4,672,858 bp. Use segment r for 0 bp 2025-01-31 10:00:11,064 DEBUG chr7:55368001-56663001: Successfully fit background model for 1,129,807 bp. Use segment r for 0 bp 2025-01-31 10:00:11,195 DEBUG chr6:57674751-66996751: Successfully fit background model for 8,262,313 bp. Use segment r for 0 bp 2025-01-31 10:00:11,228 DEBUG chr6:66996751-67102251: Successfully fit background model for 95,317 bp. Use segment r for 0 bp 2025-01-31 10:00:11,679 DEBUG chr6:67102251-70709501: Successfully fit background model for 2,900,042 bp. Use segment r for 0 bp 2025-01-31 10:00:11,852 DEBUG chr6:70709501-72489751: Successfully fit background model for 1,717,884 bp. Use segment r for 0 bp 2025-01-31 10:00:12,040 DEBUG chr6:72489751-74371251: Successfully fit background model for 1,726,425 bp. Use segment r for 0 bp 2025-01-31 10:00:12,378 DEBUG chr7:56663001-63475251: Successfully fit background model for 5,591,245 bp. Use segment r for 16,150 bp 2025-01-31 10:00:12,537 DEBUG chr6:74371251-78545251: Successfully fit background model for 3,799,519 bp. Use segment r for 0 bp 2025-01-31 10:00:12,861 DEBUG chr7:63475251-68385001: Successfully fit background model for 4,654,133 bp. Use segment r for 0 bp 2025-01-31 10:00:12,954 DEBUG chr6:78545251-82994751: Successfully fit background model for 3,998,169 bp. Use segment r for 0 bp 2025-01-31 10:00:13,345 DEBUG chr7:68385001-73517251: Successfully fit background model for 4,803,795 bp. Use segment r for 0 bp 2025-01-31 10:00:13,615 DEBUG chr7:73517251-76335001: Successfully fit background model for 2,578,871 bp. Use segment r for 0 bp 2025-01-31 10:00:13,707 DEBUG chr6:82994751-91097751: Successfully fit background model for 7,626,466 bp. Use segment r for 0 bp 2025-01-31 10:00:13,791 DEBUG chr7:76335001-77953501: Successfully fit background model for 1,495,946 bp. Use segment r for 0 bp 2025-01-31 10:00:13,945 DEBUG chr7:77953501-79227251: Successfully fit background model for 1,225,855 bp. Use segment r for 0 bp 2025-01-31 10:00:14,116 DEBUG chr7:79227251-80853251: Successfully fit background model for 1,586,196 bp. Use segment r for 0 bp 2025-01-31 10:00:14,237 DEBUG chr6:91097751-97139251: Successfully fit background model for 5,759,986 bp. Use segment r for 0 bp 2025-01-31 10:00:14,339 DEBUG chr10:7608251-33242751: Successfully fit background model for 23,418,958 bp. Use segment r for 221 bp 2025-01-31 10:00:14,566 DEBUG chr7:80853251-84822251: Successfully fit background model for 3,749,297 bp. Use segment r for 0 bp 2025-01-31 10:00:15,121 DEBUG chr7:84822251-88545751: Successfully fit background model for 3,302,072 bp. Use segment r for 55 bp 2025-01-31 10:00:15,189 DEBUG chr10:33242751-40078751: Successfully fit background model for 6,206,273 bp. Use segment r for 0 bp 2025-01-31 10:00:15,355 DEBUG chr7:88545751-90627751: Successfully fit background model for 1,889,126 bp. Use segment r for 0 bp 2025-01-31 10:00:15,532 DEBUG chr10:40078751-43474251: Successfully fit background model for 3,259,768 bp. Use segment r for 0 bp 2025-01-31 10:00:15,582 DEBUG chr7:90627751-92834251: Successfully fit background model for 2,064,920 bp. Use segment r for 0 bp 2025-01-31 10:00:15,598 DEBUG chr7:92834251-92914001: Successfully fit background model for 75,745 bp. Use segment r for 0 bp 2025-01-31 10:00:15,837 DEBUG chr10:43474251-46814751: Successfully fit background model for 3,104,545 bp. Use segment r for 0 bp 2025-01-31 10:00:15,926 DEBUG chr7:92914001-95535751: Successfully fit background model for 2,317,911 bp. Use segment r for 0 bp 2025-01-31 10:00:16,174 DEBUG chr10:46814751-49802251: Successfully fit background model for 2,630,550 bp. Use segment r for 0 bp 2025-01-31 10:00:16,734 DEBUG chr6:97139251-112890251: Successfully fit background model for 14,504,419 bp. Use segment r for 0 bp 2025-01-31 10:00:16,736 DEBUG chr7:95535751-102202251: Successfully fit background model for 6,436,850 bp. Use segment r for 0 bp 2025-01-31 10:00:16,846 DEBUG chr6:112890251-113664751: Successfully fit background model for 759,114 bp. Use segment r for 0 bp 2025-01-31 10:00:17,027 DEBUG chr10:49802251-56989751: Successfully fit background model for 6,378,403 bp. Use segment r for 0 bp 2025-01-31 10:00:17,308 DEBUG chr10:56989751-59785751: Successfully fit background model for 2,268,039 bp. Use segment r for 0 bp 2025-01-31 10:00:17,693 DEBUG chr10:59785751-63446251: Successfully fit background model for 3,555,988 bp. Use segment r for 0 bp 2025-01-31 10:00:17,934 DEBUG chr7:102202251-109089751: Successfully fit background model for 5,570,488 bp. Use segment r for 5,120 bp 2025-01-31 10:00:17,948 DEBUG chr10:63446251-65228251: Successfully fit background model for 1,558,028 bp. Use segment r for 80,898 bp 2025-01-31 10:00:18,159 DEBUG chr7:109089751-110940751: Successfully fit background model for 1,791,708 bp. Use segment r for 0 bp 2025-01-31 10:00:18,688 DEBUG chr6:113664751-124657751: Successfully fit background model for 9,829,167 bp. Use segment r for 0 bp 2025-01-31 10:00:18,691 DEBUG chr8:3070000-4690251: Successfully fit background model for 1,418,235 bp. Use segment r for 0 bp 2025-01-31 10:00:18,774 DEBUG chr6:124657751-125271751: Successfully fit background model for 588,713 bp. Use segment r for 0 bp 2025-01-31 10:00:19,007 DEBUG chr8:4690251-7649251: Successfully fit background model for 2,606,831 bp. Use segment r for 0 bp 2025-01-31 10:00:19,219 DEBUG chr8:7649251-9721751: Successfully fit background model for 1,954,511 bp. Use segment r for 0 bp 2025-01-31 10:00:19,381 DEBUG chr6:125271751-130535751: Successfully fit background model for 4,915,725 bp. Use segment r for 0 bp 2025-01-31 10:00:19,826 DEBUG chr6:130535751-134773251: Successfully fit background model for 3,482,748 bp. Use segment r for 0 bp 2025-01-31 10:00:19,839 DEBUG chr10:65228251-75628251: Successfully fit background model for 9,630,764 bp. Use segment r for 0 bp 2025-01-31 10:00:19,890 DEBUG chr6:134773251-135165751: Successfully fit background model for 383,196 bp. Use segment r for 0 bp 2025-01-31 10:00:19,922 DEBUG chr8:9721751-14872251: Successfully fit background model for 4,976,537 bp. Use segment r for 0 bp 2025-01-31 10:00:20,250 DEBUG chr10:75628251-79642751: Successfully fit background model for 3,722,516 bp. Use segment r for 0 bp 2025-01-31 10:00:20,502 DEBUG chr10:79642751-82199251: Successfully fit background model for 2,158,432 bp. Use segment r for 0 bp 2025-01-31 10:00:20,772 DEBUG chr7:110940751-126258001: Successfully fit background model for 14,622,575 bp. Use segment r for 0 bp 2025-01-31 10:00:20,976 DEBUG chr7:126258001-127968751: Successfully fit background model for 1,655,870 bp. Use segment r for 0 bp 2025-01-31 10:00:21,939 DEBUG chr6:135165751-149736546: Successfully fit background model for 13,537,310 bp. Use segment r for 0 bp 2025-01-31 10:00:22,406 DEBUG chr8:14872251-25597251: Successfully fit background model for 8,401,129 bp. Use segment r for 36,847 bp 2025-01-31 10:00:22,645 DEBUG chr8:25597251-27826751: Successfully fit background model for 2,083,719 bp. Use segment r for 0 bp 2025-01-31 10:00:22,879 DEBUG chr8:27826751-30180001: Successfully fit background model for 2,073,663 bp. Use segment r for 0 bp 2025-01-31 10:00:23,182 DEBUG chr10:82199251-99281251: Successfully fit background model for 16,078,287 bp. Use segment r for 0 bp 2025-01-31 10:00:23,225 DEBUG chr7:127968751-140797751: Successfully fit background model for 12,242,986 bp. Use segment r for 0 bp 2025-01-31 10:00:23,324 DEBUG chr7:140797751-141498251: Successfully fit background model for 685,718 bp. Use segment r for 0 bp 2025-01-31 10:00:23,689 DEBUG chr10:99281251-104375251: Successfully fit background model for 4,567,954 bp. Use segment r for 0 bp 2025-01-31 10:00:23,733 DEBUG chr8:30180001-37408251: Successfully fit background model for 6,772,779 bp. Use segment r for 0 bp 2025-01-31 10:00:23,760 DEBUG chr7:141498251-145441459: Successfully fit background model for 3,670,740 bp. Use segment r for 0 bp 2025-01-31 10:00:24,101 DEBUG chr8:37408251-39840251: Successfully fit background model for 2,148,035 bp. Use segment r for 7,136 bp 2025-01-31 10:00:25,392 DEBUG chr10:104375251-115242751: Successfully fit background model for 10,023,953 bp. Use segment r for 0 bp 2025-01-31 10:00:25,598 DEBUG chr8:39840251-50022751: Successfully fit background model for 9,348,921 bp. Use segment r for 0 bp 2025-01-31 10:00:25,730 DEBUG chr14:3931000-5090501: Successfully fit background model for 60,961 bp. Use segment r for 4,348 bp 2025-01-31 10:00:26,180 DEBUG chr14:5838000-8572251: Successfully fit background model for 1,009,252 bp. Use segment r for 9,473 bp 2025-01-31 10:00:26,436 DEBUG chr8:50022751-57458751: Successfully fit background model for 6,387,147 bp. Use segment r for 0 bp 2025-01-31 10:00:26,461 DEBUG chr8:57458751-57536251: Successfully fit background model for 75,951 bp. Use segment r for 0 bp 2025-01-31 10:00:26,904 DEBUG chr8:57536251-60948251: Successfully fit background model for 2,997,517 bp. Use segment r for 0 bp 2025-01-31 10:00:26,921 DEBUG chr8:60948251-61006251: Successfully fit background model for 50,349 bp. Use segment r for 0 bp 2025-01-31 10:00:27,118 DEBUG chr10:115242751-126900751: Successfully fit background model for 10,917,990 bp. Use segment r for 0 bp 2025-01-31 10:00:27,309 DEBUG chr10:126900751-128716751: Successfully fit background model for 1,763,643 bp. Use segment r for 0 bp 2025-01-31 10:00:27,541 DEBUG chr10:128716751-130694993: Successfully fit background model for 1,585,437 bp. Use segment r for 0 bp 2025-01-31 10:00:27,691 DEBUG chr14:8572251-18234751: Successfully fit background model for 8,802,846 bp. Use segment r for 0 bp 2025-01-31 10:00:27,719 DEBUG chr14:18234751-18287251: Successfully fit background model for 47,465 bp. Use segment r for 0 bp 2025-01-31 10:00:27,912 DEBUG chr14:18287251-19700501: Successfully fit background model for 1,079,471 bp. Use segment r for 0 bp 2025-01-31 10:00:28,119 DEBUG chr14:19700501-21725251: Successfully fit background model for 1,958,667 bp. Use segment r for 0 bp 2025-01-31 10:00:29,490 DEBUG chr8:61006251-69747751: Successfully fit background model for 7,800,672 bp. Use segment r for 2,449 bp 2025-01-31 10:00:29,625 DEBUG chr8:69747751-70932251: Successfully fit background model for 1,160,272 bp. Use segment r for 0 bp 2025-01-31 10:00:29,821 DEBUG chr8:70932251-72467751: Successfully fit background model for 1,288,654 bp. Use segment r for 0 bp 2025-01-31 10:00:30,813 DEBUG chr14:21725251-37184501: Successfully fit background model for 14,324,921 bp. Use segment r for 0 bp 2025-01-31 10:00:31,145 DEBUG chr14:37184501-40426251: Successfully fit background model for 2,901,665 bp. Use segment r for 0 bp 2025-01-31 10:00:33,104 DEBUG chr8:72467751-83562751: Successfully fit background model for 10,057,476 bp. Use segment r for 15,027 bp 2025-01-31 10:00:33,284 DEBUG chr8:83562751-85086751: Successfully fit background model for 1,496,751 bp. Use segment r for 0 bp 2025-01-31 10:00:34,357 DEBUG chr14:40426251-51983251: Successfully fit background model for 8,020,436 bp. Use segment r for 10,432 bp 2025-01-31 10:00:34,422 DEBUG chr14:51983251-52344251: Successfully fit background model for 351,767 bp. Use segment r for 0 bp 2025-01-31 10:00:34,554 DEBUG chr9:3002500-13293751: Successfully fit background model for 9,009,384 bp. Use segment r for 0 bp 2025-01-31 10:00:34,692 DEBUG chr14:52344251-54360751: Successfully fit background model for 1,208,359 bp. Use segment r for 0 bp 2025-01-31 10:00:34,752 DEBUG chr9:13293751-15035501: Successfully fit background model for 1,571,698 bp. Use segment r for 0 bp 2025-01-31 10:00:34,802 DEBUG chr8:85086751-94159251: Successfully fit background model for 8,665,928 bp. Use segment r for 0 bp 2025-01-31 10:00:35,057 DEBUG chr14:54360751-57825251: Successfully fit background model for 3,263,644 bp. Use segment r for 0 bp 2025-01-31 10:00:35,062 DEBUG chr8:94159251-96498751: Successfully fit background model for 2,217,708 bp. Use segment r for 0 bp 2025-01-31 10:00:35,524 DEBUG chr9:15035501-20639251: Successfully fit background model for 4,971,434 bp. Use segment r for 0 bp 2025-01-31 10:00:35,706 DEBUG chr9:20639251-22307251: Successfully fit background model for 1,606,641 bp. Use segment r for 0 bp 2025-01-31 10:00:35,874 DEBUG chr8:96498751-102824001: Successfully fit background model for 5,784,104 bp. Use segment r for 0 bp 2025-01-31 10:00:36,055 DEBUG chr9:22307251-25706751: Successfully fit background model for 3,127,925 bp. Use segment r for 0 bp 2025-01-31 10:00:36,063 DEBUG chr8:102824001-104532751: Successfully fit background model for 1,620,335 bp. Use segment r for 0 bp 2025-01-31 10:00:36,363 DEBUG chr8:104532751-107379251: Successfully fit background model for 2,666,581 bp. Use segment r for 0 bp 2025-01-31 10:00:36,709 DEBUG chr8:107379251-110845751: Successfully fit background model for 3,370,972 bp. Use segment r for 0 bp 2025-01-31 10:00:36,792 DEBUG chr9:25706751-31202251: Successfully fit background model for 5,218,791 bp. Use segment r for 0 bp 2025-01-31 10:00:36,832 DEBUG chr8:110845751-111850751: Successfully fit background model for 975,921 bp. Use segment r for 0 bp 2025-01-31 10:00:37,560 DEBUG chr9:31202251-37814251: Successfully fit background model for 6,130,680 bp. Use segment r for 0 bp 2025-01-31 10:00:37,748 DEBUG chr8:111850751-116865751: Successfully fit background model for 4,541,394 bp. Use segment r for 289,480 bp 2025-01-31 10:00:37,862 DEBUG chr9:37814251-40757251: Successfully fit background model for 2,653,518 bp. Use segment r for 0 bp 2025-01-31 10:00:38,098 DEBUG chr8:116865751-119343751: Successfully fit background model for 2,405,570 bp. Use segment r for 0 bp 2025-01-31 10:00:38,474 DEBUG chr9:40757251-44064751: Successfully fit background model for 3,246,118 bp. Use segment r for 0 bp 2025-01-31 10:00:38,583 DEBUG chr9:44064751-44476751: Successfully fit background model for 388,652 bp. Use segment r for 0 bp 2025-01-31 10:00:38,835 DEBUG chr8:119343751-124313751: Successfully fit background model for 4,751,675 bp. Use segment r for 0 bp 2025-01-31 10:00:39,385 DEBUG chr8:124313751-129401213: Successfully fit background model for 4,720,292 bp. Use segment r for 0 bp 2025-01-31 10:00:39,548 DEBUG chr14:57825251-80227251: Successfully fit background model for 20,791,109 bp. Use segment r for 0 bp 2025-01-31 10:00:40,728 DEBUG chr9:44476751-56412751: Successfully fit background model for 11,398,270 bp. Use segment r for 0 bp 2025-01-31 10:00:42,071 DEBUG chr14:80227251-85986751: Successfully fit background model for 5,157,184 bp. Use segment r for 0 bp 2025-01-31 10:00:42,310 DEBUG chr14:85986751-87554251: Successfully fit background model for 1,456,368 bp. Use segment r for 0 bp 2025-01-31 10:00:42,970 DEBUG chr9:56412751-66908251: Successfully fit background model for 10,217,808 bp. Use segment r for 0 bp 2025-01-31 10:00:44,168 DEBUG chr14:87554251-98431751: Successfully fit background model for 9,874,405 bp. Use segment r for 0 bp 2025-01-31 10:00:44,767 DEBUG chr9:66908251-78788251: Successfully fit background model for 11,231,318 bp. Use segment r for 0 bp 2025-01-31 10:00:44,982 DEBUG chr14:98431751-105547501: Successfully fit background model for 6,601,326 bp. Use segment r for 0 bp 2025-01-31 10:00:45,700 DEBUG chr14:105547501-113113751: Successfully fit background model for 6,812,159 bp. Use segment r for 0 bp 2025-01-31 10:00:46,540 DEBUG chr9:78788251-90113251: Successfully fit background model for 9,892,535 bp. Use segment r for 0 bp 2025-01-31 10:00:46,614 DEBUG chr9:90113251-90539501: Successfully fit background model for 378,639 bp. Use segment r for 0 bp 2025-01-31 10:00:46,937 DEBUG chr14:113113751-121272251: Successfully fit background model for 7,508,914 bp. Use segment r for 0 bp 2025-01-31 10:00:46,974 DEBUG chr9:90539501-94017251: Successfully fit background model for 3,090,215 bp. Use segment r for 0 bp 2025-01-31 10:00:47,025 DEBUG chr14:121272251-122030501: Successfully fit background model for 745,653 bp. Use segment r for 0 bp 2025-01-31 10:00:47,382 DEBUG chr14:122030501-124902244: Successfully fit background model for 2,397,197 bp. Use segment r for 0 bp 2025-01-31 10:00:48,991 DEBUG chr9:94017251-106146751: Successfully fit background model for 11,573,084 bp. Use segment r for 0 bp 2025-01-31 10:00:49,618 DEBUG chr9:106146751-110623751: Successfully fit background model for 4,124,136 bp. Use segment r for 0 bp 2025-01-31 10:00:52,511 DEBUG chr9:110623751-119320251: Successfully fit background model for 8,219,887 bp. Use segment r for 0 bp 2025-01-31 10:00:53,938 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:01:45,906 DEBUG chr11:3100500-6722751: Successfully fit background model for 3,453,078 bp. Use segment r for 0 bp 2025-01-31 10:01:46,475 DEBUG chr11:6722751-12734251: Successfully fit background model for 5,401,884 bp. Use segment r for 0 bp 2025-01-31 10:01:46,770 DEBUG chr11:12734251-15980001: Successfully fit background model for 2,863,279 bp. Use segment r for 0 bp 2025-01-31 10:01:47,085 DEBUG chr11:15980001-19429251: Successfully fit background model for 3,138,910 bp. Use segment r for 0 bp 2025-01-31 10:01:47,564 DEBUG chr11:19429251-24418251: Successfully fit background model for 4,717,144 bp. Use segment r for 0 bp 2025-01-31 10:01:47,940 DEBUG chr11:24418251-28746251: Successfully fit background model for 3,878,795 bp. Use segment r for 0 bp 2025-01-31 10:01:48,621 DEBUG chr11:28746251-36353251: Successfully fit background model for 7,066,610 bp. Use segment r for 0 bp 2025-01-31 10:01:49,341 DEBUG chr11:36353251-44452501: Successfully fit background model for 7,547,896 bp. Use segment r for 0 bp 2025-01-31 10:01:49,723 DEBUG chr11:44452501-48774001: Successfully fit background model for 3,985,562 bp. Use segment r for 0 bp 2025-01-31 10:01:49,745 DEBUG chr11:48774001-48875751: Successfully fit background model for 98,895 bp. Use segment r for 0 bp 2025-01-31 10:01:50,405 DEBUG chr11:48875751-55640751: Successfully fit background model for 6,358,909 bp. Use segment r for 0 bp 2025-01-31 10:01:50,593 DEBUG chr11:55640751-57615751: Successfully fit background model for 1,839,384 bp. Use segment r for 0 bp 2025-01-31 10:01:51,026 DEBUG chr11:57615751-62454251: Successfully fit background model for 4,592,176 bp. Use segment r for 0 bp 2025-01-31 10:01:51,493 DEBUG chr13:3000500-21156251: Successfully fit background model for 15,922,657 bp. Use segment r for 92 bp 2025-01-31 10:01:51,606 DEBUG chr13:21156251-22052251: Successfully fit background model for 802,798 bp. Use segment r for 0 bp 2025-01-31 10:01:51,647 DEBUG chr11:62454251-68965751: Successfully fit background model for 6,283,098 bp. Use segment r for 0 bp 2025-01-31 10:01:51,728 DEBUG chr13:22052251-23260751: Successfully fit background model for 908,648 bp. Use segment r for 0 bp 2025-01-31 10:01:51,759 DEBUG chr11:68965751-70022251: Successfully fit background model for 1,038,025 bp. Use segment r for 0 bp 2025-01-31 10:01:51,786 DEBUG chr13:23260751-23773751: Successfully fit background model for 471,063 bp. Use segment r for 0 bp 2025-01-31 10:01:51,863 DEBUG chr11:70022251-71061751: Successfully fit background model for 1,002,936 bp. Use segment r for 0 bp 2025-01-31 10:01:51,940 DEBUG chr13:23773751-25358751: Successfully fit background model for 1,484,846 bp. Use segment r for 0 bp 2025-01-31 10:01:52,188 DEBUG chr13:25358751-27947751: Successfully fit background model for 2,325,949 bp. Use segment r for 0 bp 2025-01-31 10:01:52,236 DEBUG chr11:71061751-74827751: Successfully fit background model for 3,444,949 bp. Use segment r for 0 bp 2025-01-31 10:01:52,252 DEBUG chr11:74827751-74898751: Successfully fit background model for 63,292 bp. Use segment r for 0 bp 2025-01-31 10:01:52,739 DEBUG chr11:74898751-79961251: Successfully fit background model for 4,918,841 bp. Use segment r for 0 bp 2025-01-31 10:01:52,796 DEBUG chr13:27947751-33930251: Successfully fit background model for 5,374,630 bp. Use segment r for 0 bp 2025-01-31 10:01:53,004 DEBUG chr11:79961251-82746251: Successfully fit background model for 2,702,066 bp. Use segment r for 0 bp 2025-01-31 10:01:53,212 DEBUG chr13:33930251-38482251: Successfully fit background model for 4,281,919 bp. Use segment r for 0 bp 2025-01-31 10:01:53,502 DEBUG chr11:82746251-87770751: Successfully fit background model for 4,799,329 bp. Use segment r for 0 bp 2025-01-31 10:01:53,643 DEBUG chr13:38482251-43171501: Successfully fit background model for 4,453,382 bp. Use segment r for 0 bp 2025-01-31 10:01:53,780 DEBUG chr11:87770751-90791251: Successfully fit background model for 2,914,830 bp. Use segment r for 0 bp 2025-01-31 10:01:53,995 DEBUG chr11:90791251-93185751: Successfully fit background model for 2,196,688 bp. Use segment r for 0 bp 2025-01-31 10:01:54,092 DEBUG chr11:93185751-94127501: Successfully fit background model for 897,102 bp. Use segment r for 0 bp 2025-01-31 10:01:54,549 DEBUG chr12:3000500-5454251: Successfully fit background model for 2,259,934 bp. Use segment r for 0 bp 2025-01-31 10:01:54,865 DEBUG chr11:94127501-102318751: Successfully fit background model for 7,962,572 bp. Use segment r for 0 bp 2025-01-31 10:01:54,966 DEBUG chr13:43171501-51830751: Successfully fit background model for 7,969,316 bp. Use segment r for 159 bp 2025-01-31 10:01:55,211 DEBUG chr13:51830751-54446751: Successfully fit background model for 2,530,089 bp. Use segment r for 0 bp 2025-01-31 10:01:55,339 DEBUG chr13:54446751-55686251: Successfully fit background model for 1,196,389 bp. Use segment r for 0 bp 2025-01-31 10:01:55,626 DEBUG chr11:102318751-110702751: Successfully fit background model for 8,070,759 bp. Use segment r for 0 bp 2025-01-31 10:01:55,752 DEBUG chr13:55686251-59854251: Successfully fit background model for 4,056,745 bp. Use segment r for 0 bp 2025-01-31 10:01:55,784 DEBUG chr11:110702751-112240251: Successfully fit background model for 1,461,532 bp. Use segment r for 0 bp 2025-01-31 10:01:55,934 DEBUG chr12:5454251-17493251: Successfully fit background model for 11,020,204 bp. Use segment r for 0 bp 2025-01-31 10:01:56,050 DEBUG chr11:112240251-115162251: Successfully fit background model for 2,819,379 bp. Use segment r for 0 bp 2025-01-31 10:01:56,237 DEBUG chr13:59854251-63303251: Successfully fit background model for 2,776,882 bp. Use segment r for 73,180 bp 2025-01-31 10:01:56,423 DEBUG chr13:63303251-65287251: Successfully fit background model for 1,841,947 bp. Use segment r for 0 bp 2025-01-31 10:01:56,472 DEBUG chr15:3050500-5088751: Successfully fit background model for 1,734,902 bp. Use segment r for 0 bp 2025-01-31 10:01:56,544 DEBUG chr16:3092500-5446251: Successfully fit background model for 1,919,554 bp. Use segment r for 309 bp 2025-01-31 10:01:56,792 DEBUG chr16:5446251-7920751: Successfully fit background model for 2,381,941 bp. Use segment r for 0 bp 2025-01-31 10:01:56,840 DEBUG chr11:115162251-122082543: Successfully fit background model for 6,604,705 bp. Use segment r for 0 bp 2025-01-31 10:01:57,259 DEBUG chr12:17493251-24560751: Successfully fit background model for 2,623,048 bp. Use segment r for 16,203 bp 2025-01-31 10:01:57,304 DEBUG chr12:24560751-24843251: Successfully fit background model for 268,430 bp. Use segment r for 0 bp 2025-01-31 10:01:57,529 DEBUG chr16:7920751-14564251: Successfully fit background model for 6,255,320 bp. Use segment r for 0 bp 2025-01-31 10:01:57,575 DEBUG chr13:65287251-72278751: Successfully fit background model for 5,055,591 bp. Use segment r for 15,361 bp 2025-01-31 10:01:57,785 DEBUG chr16:14564251-17110251: Successfully fit background model for 2,227,052 bp. Use segment r for 0 bp 2025-01-31 10:01:57,786 DEBUG chr13:72278751-74589751: Successfully fit background model for 2,190,778 bp. Use segment r for 0 bp 2025-01-31 10:01:57,890 DEBUG chr15:5088751-13672501: Successfully fit background model for 7,918,121 bp. Use segment r for 0 bp 2025-01-31 10:01:57,989 DEBUG chr16:17110251-19016251: Successfully fit background model for 1,833,903 bp. Use segment r for 0 bp 2025-01-31 10:01:58,054 DEBUG chr16:19016251-19614251: Successfully fit background model for 468,954 bp. Use segment r for 0 bp 2025-01-31 10:01:58,185 DEBUG chr13:74589751-78158251: Successfully fit background model for 3,161,616 bp. Use segment r for 0 bp 2025-01-31 10:01:58,201 DEBUG chr13:78158251-78213251: Successfully fit background model for 54,897 bp. Use segment r for 0 bp 2025-01-31 10:01:58,243 DEBUG chr12:24843251-31901251: Successfully fit background model for 6,713,888 bp. Use segment r for 0 bp 2025-01-31 10:01:58,390 DEBUG chr12:31901251-33144751: Successfully fit background model for 1,161,354 bp. Use segment r for 0 bp 2025-01-31 10:01:58,527 DEBUG chr13:78213251-80881751: Successfully fit background model for 2,396,277 bp. Use segment r for 0 bp 2025-01-31 10:01:58,541 DEBUG chr13:80881751-80933251: Successfully fit background model for 51,270 bp. Use segment r for 0 bp 2025-01-31 10:01:58,552 DEBUG chr16:19614251-23467751: Successfully fit background model for 3,595,666 bp. Use segment r for 0 bp 2025-01-31 10:01:58,633 DEBUG chr13:80933251-81625501: Successfully fit background model for 650,614 bp. Use segment r for 0 bp 2025-01-31 10:01:58,653 DEBUG chr13:81625501-81784251: Successfully fit background model for 148,907 bp. Use segment r for 0 bp 2025-01-31 10:01:58,854 DEBUG chr13:81784251-83686751: Successfully fit background model for 1,750,112 bp. Use segment r for 0 bp 2025-01-31 10:01:58,865 DEBUG chr13:83686751-83738251: Successfully fit background model for 44,290 bp. Use segment r for 0 bp 2025-01-31 10:01:59,198 DEBUG chr16:23467751-29046751: Successfully fit background model for 5,235,981 bp. Use segment r for 0 bp 2025-01-31 10:01:59,366 DEBUG chr15:13672501-23117251: Successfully fit background model for 8,415,433 bp. Use segment r for 0 bp 2025-01-31 10:01:59,558 DEBUG chr13:83738251-90904251: Successfully fit background model for 6,403,506 bp. Use segment r for 0 bp 2025-01-31 10:01:59,598 DEBUG chr15:23117251-25470251: Successfully fit background model for 2,089,228 bp. Use segment r for 0 bp 2025-01-31 10:01:59,875 DEBUG chr15:25470251-27983751: Successfully fit background model for 2,375,510 bp. Use segment r for 0 bp 2025-01-31 10:02:00,176 DEBUG chr15:27983751-31122251: Successfully fit background model for 2,834,207 bp. Use segment r for 0 bp 2025-01-31 10:02:00,250 DEBUG chr15:31122251-31787251: Successfully fit background model for 621,071 bp. Use segment r for 0 bp 2025-01-31 10:02:00,434 DEBUG chr15:31787251-33633251: Successfully fit background model for 1,657,548 bp. Use segment r for 0 bp 2025-01-31 10:02:00,878 DEBUG chr13:90904251-100725251: Successfully fit background model for 9,237,522 bp. Use segment r for 0 bp 2025-01-31 10:02:00,908 DEBUG chr13:100725251-100787751: Successfully fit background model for 58,843 bp. Use segment r for 0 bp 2025-01-31 10:02:01,110 DEBUG chr15:33633251-39181751: Successfully fit background model for 5,002,887 bp. Use segment r for 0 bp 2025-01-31 10:02:01,143 DEBUG chr16:29046751-39133251: Successfully fit background model for 9,627,530 bp. Use segment r for 0 bp 2025-01-31 10:02:01,729 DEBUG chr15:39181751-44907251: Successfully fit background model for 5,244,057 bp. Use segment r for 0 bp 2025-01-31 10:02:02,553 DEBUG chr13:100787751-111682251: Successfully fit background model for 10,125,674 bp. Use segment r for 0 bp 2025-01-31 10:02:02,627 DEBUG chr15:44907251-50146751: Successfully fit background model for 4,687,899 bp. Use segment r for 7,734 bp 2025-01-31 10:02:02,772 DEBUG chr13:111682251-113791751: Successfully fit background model for 1,994,254 bp. Use segment r for 0 bp 2025-01-31 10:02:03,175 DEBUG chr12:33144751-51687751: Successfully fit background model for 16,660,095 bp. Use segment r for 140,292 bp 2025-01-31 10:02:03,281 DEBUG chr16:39133251-52843251: Successfully fit background model for 12,560,967 bp. Use segment r for 0 bp 2025-01-31 10:02:03,292 DEBUG chr12:51687751-52501251: Successfully fit background model for 749,154 bp. Use segment r for 0 bp 2025-01-31 10:02:03,410 DEBUG chr15:50146751-57107751: Successfully fit background model for 6,361,838 bp. Use segment r for 0 bp 2025-01-31 10:02:03,453 DEBUG chr13:113791751-119425751: Successfully fit background model for 5,224,727 bp. Use segment r for 0 bp 2025-01-31 10:02:03,601 DEBUG chr16:52843251-55821251: Successfully fit background model for 2,658,882 bp. Use segment r for 0 bp 2025-01-31 10:02:03,607 DEBUG chr13:119425751-120421639: Successfully fit background model for 402,958 bp. Use segment r for 988 bp 2025-01-31 10:02:03,662 DEBUG chr16:55821251-56078251: Successfully fit background model for 226,486 bp. Use segment r for 0 bp 2025-01-31 10:02:03,672 DEBUG chr15:57107751-59928251: Successfully fit background model for 2,689,585 bp. Use segment r for 0 bp 2025-01-31 10:02:04,129 DEBUG chr16:56078251-59921751: Successfully fit background model for 3,418,538 bp. Use segment r for 0 bp 2025-01-31 10:02:04,501 DEBUG chr15:59928251-67422751: Successfully fit background model for 6,805,992 bp. Use segment r for 0 bp 2025-01-31 10:02:04,610 DEBUG chr16:59921751-64193251: Successfully fit background model for 3,813,894 bp. Use segment r for 0 bp 2025-01-31 10:02:04,925 DEBUG chr12:52501251-60376751: Successfully fit background model for 7,085,113 bp. Use segment r for 84 bp 2025-01-31 10:02:05,024 DEBUG chr15:67422751-73024251: Successfully fit background model for 5,172,189 bp. Use segment r for 0 bp 2025-01-31 10:02:05,303 DEBUG chr15:73024251-75882751: Successfully fit background model for 2,681,155 bp. Use segment r for 0 bp 2025-01-31 10:02:05,392 DEBUG chr12:60376751-64964751: Successfully fit background model for 4,035,000 bp. Use segment r for 0 bp 2025-01-31 10:02:05,492 DEBUG chr12:64964751-65652251: Successfully fit background model for 632,388 bp. Use segment r for 0 bp 2025-01-31 10:02:05,869 DEBUG chr12:65652251-69119751: Successfully fit background model for 3,129,343 bp. Use segment r for 0 bp 2025-01-31 10:02:05,943 DEBUG chr15:75882751-82370251: Successfully fit background model for 6,204,841 bp. Use segment r for 0 bp 2025-01-31 10:02:06,267 DEBUG chr15:82370251-85807251: Successfully fit background model for 3,276,645 bp. Use segment r for 0 bp 2025-01-31 10:02:06,542 DEBUG chr15:85807251-88715751: Successfully fit background model for 2,827,961 bp. Use segment r for 0 bp 2025-01-31 10:02:06,648 DEBUG chr15:88715751-89812251: Successfully fit background model for 1,032,801 bp. Use segment r for 0 bp 2025-01-31 10:02:06,905 DEBUG chr15:89812251-92028001: Successfully fit background model for 2,067,915 bp. Use segment r for 0 bp 2025-01-31 10:02:07,618 DEBUG chr15:92028001-98504251: Successfully fit background model for 6,151,088 bp. Use segment r for 0 bp 2025-01-31 10:02:08,056 DEBUG chr15:98504251-103367251: Successfully fit background model for 4,709,508 bp. Use segment r for 0 bp 2025-01-31 10:02:08,091 DEBUG chr12:69119751-83299751: Successfully fit background model for 13,419,252 bp. Use segment r for 0 bp 2025-01-31 10:02:08,155 DEBUG chr15:103367251-104043685: Successfully fit background model for 429,654 bp. Use segment r for 0 bp 2025-01-31 10:02:08,332 DEBUG chr16:64193251-87340251: Successfully fit background model for 21,034,087 bp. Use segment r for 0 bp 2025-01-31 10:02:08,482 DEBUG chr12:83299751-87155501: Successfully fit background model for 3,759,219 bp. Use segment r for 0 bp 2025-01-31 10:02:08,644 DEBUG chr16:87340251-89784251: Successfully fit background model for 2,279,911 bp. Use segment r for 0 bp 2025-01-31 10:02:09,149 DEBUG chr16:89784251-94458751: Successfully fit background model for 4,532,836 bp. Use segment r for 0 bp 2025-01-31 10:02:09,515 DEBUG chr16:94458751-98207768: Successfully fit background model for 3,489,875 bp. Use segment r for 0 bp 2025-01-31 10:02:09,593 DEBUG chr12:87155501-92841751: Successfully fit background model for 4,867,842 bp. Use segment r for 5,111 bp 2025-01-31 10:02:10,573 DEBUG chr12:92841751-98710751: Successfully fit background model for 5,299,074 bp. Use segment r for 0 bp 2025-01-31 10:02:10,730 DEBUG chr17:3000000-15917251: Successfully fit background model for 10,891,288 bp. Use segment r for 0 bp 2025-01-31 10:02:11,382 DEBUG chr12:98710751-105954751: Successfully fit background model for 6,818,343 bp. Use segment r for 0 bp 2025-01-31 10:02:11,695 DEBUG chr17:15917251-23531751: Successfully fit background model for 6,271,758 bp. Use segment r for 0 bp 2025-01-31 10:02:11,848 DEBUG chr12:105954751-110372251: Successfully fit background model for 4,276,745 bp. Use segment r for 0 bp 2025-01-31 10:02:11,956 DEBUG chr17:23531751-26005251: Successfully fit background model for 2,391,603 bp. Use segment r for 0 bp 2025-01-31 10:02:12,117 DEBUG chr12:110372251-113227251: Successfully fit background model for 2,773,961 bp. Use segment r for 0 bp 2025-01-31 10:02:12,309 DEBUG chr12:113227251-114997251: Successfully fit background model for 1,523,131 bp. Use segment r for 0 bp 2025-01-31 10:02:12,858 DEBUG chr12:114997251-120129022: Successfully fit background model for 4,450,830 bp. Use segment r for 0 bp 2025-01-31 10:02:13,818 DEBUG chr17:26005251-37076251: Successfully fit background model for 10,354,231 bp. Use segment r for 0 bp 2025-01-31 10:02:14,758 DEBUG chr17:37076251-44356251: Successfully fit background model for 6,372,407 bp. Use segment r for 0 bp 2025-01-31 10:02:14,892 DEBUG chr17:44356251-45546751: Successfully fit background model for 1,143,839 bp. Use segment r for 0 bp 2025-01-31 10:02:15,241 DEBUG chr17:45546751-48658751: Successfully fit background model for 3,012,189 bp. Use segment r for 0 bp 2025-01-31 10:02:16,273 DEBUG chr17:48658751-55931251: Successfully fit background model for 6,636,206 bp. Use segment r for 0 bp 2025-01-31 10:02:16,435 DEBUG chr17:55931251-57367251: Successfully fit background model for 1,405,243 bp. Use segment r for 0 bp 2025-01-31 10:02:17,210 DEBUG chr17:57367251-62340251: Successfully fit background model for 4,472,142 bp. Use segment r for 0 bp 2025-01-31 10:02:19,751 DEBUG chr17:62340251-75847751: Successfully fit background model for 12,690,321 bp. Use segment r for 0 bp 2025-01-31 10:02:20,023 DEBUG chr17:75847751-77724751: Successfully fit background model for 1,716,537 bp. Use segment r for 0 bp 2025-01-31 10:02:20,484 DEBUG chr17:77724751-81372751: Successfully fit background model for 3,456,425 bp. Use segment r for 0 bp 2025-01-31 10:02:20,613 DEBUG chr17:81372751-82499751: Successfully fit background model for 1,037,155 bp. Use segment r for 0 bp 2025-01-31 10:02:21,580 DEBUG chr17:82499751-89300751: Successfully fit background model for 6,500,379 bp. Use segment r for 0 bp 2025-01-31 10:02:22,865 DEBUG chr17:89300751-94987271: Successfully fit background model for 5,050,624 bp. Use segment r for 1,549 bp 2025-01-31 10:03:11,229 DEBUG chr18:3001000-27111251: Successfully fit background model for 21,977,565 bp. Use segment r for 0 bp 2025-01-31 10:03:11,419 DEBUG chr19:3080000-7497751: Successfully fit background model for 4,115,369 bp. Use segment r for 0 bp 2025-01-31 10:03:11,551 DEBUG chr19:7497751-8712251: Successfully fit background model for 968,298 bp. Use segment r for 0 bp 2025-01-31 10:03:11,598 DEBUG chr19:8712251-9136251: Successfully fit background model for 412,179 bp. Use segment r for 0 bp 2025-01-31 10:03:11,808 DEBUG chr19:9136251-10998251: Successfully fit background model for 1,519,403 bp. Use segment r for 0 bp 2025-01-31 10:03:11,889 DEBUG chr18:27111251-31632251: Successfully fit background model for 4,165,045 bp. Use segment r for 22 bp 2025-01-31 10:03:12,137 DEBUG chr18:31632251-34220251: Successfully fit background model for 2,392,412 bp. Use segment r for 0 bp 2025-01-31 10:03:12,373 DEBUG chr18:34220251-36807251: Successfully fit background model for 2,527,512 bp. Use segment r for 0 bp 2025-01-31 10:03:12,486 DEBUG chr18:36807251-37877251: Successfully fit background model for 938,776 bp. Use segment r for 0 bp 2025-01-31 10:03:12,529 DEBUG chr18:37877251-38275751: Successfully fit background model for 392,206 bp. Use segment r for 0 bp 2025-01-31 10:03:13,177 DEBUG chr19:10998251-22688251: Successfully fit background model for 10,819,883 bp. Use segment r for 0 bp 2025-01-31 10:03:13,442 DEBUG chr19:22688251-25289751: Successfully fit background model for 2,510,193 bp. Use segment r for 0 bp 2025-01-31 10:03:13,657 DEBUG chr19:25289751-27499751: Successfully fit background model for 2,084,081 bp. Use segment r for 0 bp 2025-01-31 10:03:14,191 DEBUG chr19:27499751-32759751: Successfully fit background model for 5,032,096 bp. Use segment r for 0 bp 2025-01-31 10:03:14,497 DEBUG chr19:32759751-35879751: Successfully fit background model for 2,788,114 bp. Use segment r for 0 bp 2025-01-31 10:03:14,999 DEBUG chr18:38275751-60480751: Successfully fit background model for 20,577,801 bp. Use segment r for 0 bp 2025-01-31 10:03:15,062 DEBUG chr19:35879751-41799751: Successfully fit background model for 5,448,579 bp. Use segment r for 0 bp 2025-01-31 10:03:15,150 DEBUG chr18:60480751-61615751: Successfully fit background model for 1,112,019 bp. Use segment r for 0 bp 2025-01-31 10:03:15,647 DEBUG chr19:41799751-47946751: Successfully fit background model for 5,939,479 bp. Use segment r for 0 bp 2025-01-31 10:03:15,807 DEBUG chr18:61615751-68233251: Successfully fit background model for 6,341,727 bp. Use segment r for 0 bp 2025-01-31 10:03:16,086 DEBUG chr19:47946751-52658251: Successfully fit background model for 4,390,835 bp. Use segment r for 0 bp 2025-01-31 10:03:16,254 DEBUG chr19:52658251-54255751: Successfully fit background model for 1,524,295 bp. Use segment r for 0 bp 2025-01-31 10:03:16,606 DEBUG chr18:68233251-73702751: Successfully fit background model for 5,065,288 bp. Use segment r for 1,190 bp 2025-01-31 10:03:17,048 DEBUG chr19:54255751-61431566: Successfully fit background model for 6,793,933 bp. Use segment r for 0 bp 2025-01-31 10:03:18,475 DEBUG chr18:73702751-84846251: Successfully fit background model for 10,504,089 bp. Use segment r for 0 bp 2025-01-31 10:03:19,097 DEBUG chr18:84846251-90702639: Successfully fit background model for 4,984,047 bp. Use segment r for 0 bp 2025-01-31 10:04:14,063 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:04:14,065 INFO Calculating per-bp p-values 2025-01-31 10:04:14,066 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:04:14,122 DEBUG chr1: Calculating p-values 2025-01-31 10:04:14,126 DEBUG chr3: Calculating p-values 2025-01-31 10:04:14,126 DEBUG chr2: Calculating p-values 2025-01-31 10:04:14,127 DEBUG chr5: Calculating p-values 2025-01-31 10:04:14,128 DEBUG chrX: Calculating p-values 2025-01-31 10:04:14,128 DEBUG chr4: Calculating p-values 2025-01-31 10:04:40,759 DEBUG Saving p-values for chrX 2025-01-31 10:04:40,927 DEBUG Saving p-values for chr5 2025-01-31 10:04:41,792 DEBUG Saving p-values for chr3 2025-01-31 10:04:43,332 DEBUG Saving p-values for chr4 2025-01-31 10:04:48,449 DEBUG Saving p-values for chr2 2025-01-31 10:04:50,637 DEBUG Saving p-values for chr1 2025-01-31 10:05:07,764 DEBUG chr6: Calculating p-values 2025-01-31 10:05:11,056 DEBUG chr7: Calculating p-values 2025-01-31 10:05:13,990 DEBUG chr10: Calculating p-values 2025-01-31 10:05:14,933 DEBUG chr8: Calculating p-values 2025-01-31 10:05:18,248 DEBUG chr14: Calculating p-values 2025-01-31 10:05:29,313 DEBUG chr9: Calculating p-values 2025-01-31 10:05:32,084 DEBUG Saving p-values for chr6 2025-01-31 10:05:35,169 DEBUG Saving p-values for chr7 2025-01-31 10:05:35,572 DEBUG Saving p-values for chr10 2025-01-31 10:05:36,960 DEBUG Saving p-values for chr14 2025-01-31 10:05:41,023 DEBUG Saving p-values for chr8 2025-01-31 10:05:53,492 DEBUG Saving p-values for chr9 2025-01-31 10:05:56,223 DEBUG chr11: Calculating p-values 2025-01-31 10:05:56,250 DEBUG chr13: Calculating p-values 2025-01-31 10:05:56,542 DEBUG chr12: Calculating p-values 2025-01-31 10:06:05,595 DEBUG chr15: Calculating p-values 2025-01-31 10:06:09,904 DEBUG chr16: Calculating p-values 2025-01-31 10:06:13,592 DEBUG chr17: Calculating p-values 2025-01-31 10:06:17,700 DEBUG Saving p-values for chr12 2025-01-31 10:06:20,049 DEBUG Saving p-values for chr13 2025-01-31 10:06:22,301 DEBUG Saving p-values for chr11 2025-01-31 10:06:27,373 DEBUG Saving p-values for chr16 2025-01-31 10:06:29,084 DEBUG Saving p-values for chr15 2025-01-31 10:06:32,400 DEBUG Saving p-values for chr17 2025-01-31 10:06:35,880 DEBUG chrY: Calculating p-values 2025-01-31 10:06:39,792 DEBUG chr18: Calculating p-values 2025-01-31 10:06:40,240 DEBUG chr19: Calculating p-values 2025-01-31 10:06:51,143 DEBUG Saving p-values for chr19 2025-01-31 10:06:51,988 DEBUG Saving p-values for chr18 2025-01-31 10:07:14,642 DEBUG Results of calc_pvals emitted. 2025-01-31 10:07:14,642 INFO Converting threshold values to bigwig 2025-01-31 10:07:14,642 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:07:32,197 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:08:04,294 INFO Converting background quantile values to bigwig 2025-01-31 10:08:04,294 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:08:38,929 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:09:08,277 INFO Calculating per-bp FDRs 2025-01-31 10:09:08,298 DEBUG AG81950: Extracting raw P-values 2025-01-31 10:09:48,978 DEBUG AG81950: Computing FDR 2025-01-31 10:10:10,010 DEBUG AG81950: Saving FDRs to parquet 2025-01-31 10:11:14,000 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:11:14,003 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:11:14,003 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:11:17,549 DEBUG chr5: Calling hotspots 2025-01-31 10:11:17,928 DEBUG chr4: Calling hotspots 2025-01-31 10:11:18,050 DEBUG chr3: Calling hotspots 2025-01-31 10:11:18,071 DEBUG chrX: Calling hotspots 2025-01-31 10:11:18,121 DEBUG chr2: Calling hotspots 2025-01-31 10:11:18,216 DEBUG chr1: Calling hotspots 2025-01-31 10:11:25,719 DEBUG chr5: 4136 hotspots called 2025-01-31 10:11:26,826 DEBUG chr4: 4237 hotspots called 2025-01-31 10:11:27,350 DEBUG chr3: 3356 hotspots called 2025-01-31 10:11:27,846 DEBUG chrX: 2087 hotspots called 2025-01-31 10:11:28,586 DEBUG chr2: 5254 hotspots called 2025-01-31 10:11:28,747 DEBUG chr6: Calling hotspots 2025-01-31 10:11:29,946 DEBUG chr7: Calling hotspots 2025-01-31 10:11:30,163 DEBUG chr1: 4516 hotspots called 2025-01-31 10:11:30,296 DEBUG chr10: Calling hotspots 2025-01-31 10:11:30,580 DEBUG chr8: Calling hotspots 2025-01-31 10:11:31,247 DEBUG chr14: Calling hotspots 2025-01-31 10:11:32,632 DEBUG chr9: Calling hotspots 2025-01-31 10:11:34,960 DEBUG chr6: 3349 hotspots called 2025-01-31 10:11:36,003 DEBUG chr8: 3197 hotspots called 2025-01-31 10:11:36,060 DEBUG chr14: 2165 hotspots called 2025-01-31 10:11:36,104 DEBUG chr10: 3092 hotspots called 2025-01-31 10:11:36,206 DEBUG chr7: 4152 hotspots called 2025-01-31 10:11:37,443 DEBUG chr9: 3641 hotspots called 2025-01-31 10:11:37,460 DEBUG chr11: Calling hotspots 2025-01-31 10:11:38,084 DEBUG chr15: Calling hotspots 2025-01-31 10:11:38,171 DEBUG chr16: Calling hotspots 2025-01-31 10:11:38,365 DEBUG chr13: Calling hotspots 2025-01-31 10:11:38,511 DEBUG chr12: Calling hotspots 2025-01-31 10:11:39,242 DEBUG chr17: Calling hotspots 2025-01-31 10:11:43,176 DEBUG chr16: 2166 hotspots called 2025-01-31 10:11:43,691 DEBUG chr15: 2680 hotspots called 2025-01-31 10:11:44,024 DEBUG chr11: 5070 hotspots called 2025-01-31 10:11:44,268 DEBUG chr17: 2799 hotspots called 2025-01-31 10:11:44,475 DEBUG chr13: 3096 hotspots called 2025-01-31 10:11:44,501 DEBUG chr12: 2526 hotspots called 2025-01-31 10:11:44,725 DEBUG chr19: Calling hotspots 2025-01-31 10:11:44,878 DEBUG chr18: Calling hotspots 2025-01-31 10:11:47,168 DEBUG chr19: 2165 hotspots called 2025-01-31 10:11:48,438 DEBUG chr18: 1759 hotspots called 2025-01-31 10:11:48,765 DEBUG Results of call_hotspots emitted. 2025-01-31 10:11:48,799 INFO There are 65443 hotspots called at FDR=0.05 2025-01-31 10:11:51,849 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:11:51,849 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:12:01,036 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:12:01,116 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:12:01,335 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:12:01,354 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:12:02,368 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:12:02,647 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:12:11,871 DEBUG chr5: 5052 peaks called 2025-01-31 10:12:12,680 DEBUG chr3: 4115 peaks called 2025-01-31 10:12:13,039 DEBUG chr4: 5141 peaks called 2025-01-31 10:12:13,212 DEBUG chrX: 2469 peaks called 2025-01-31 10:12:15,475 DEBUG chr2: 6429 peaks called 2025-01-31 10:12:17,313 DEBUG chr1: 5433 peaks called 2025-01-31 10:12:19,726 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:12:20,067 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:12:20,550 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:12:20,564 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:12:21,632 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:12:23,480 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:12:31,049 DEBUG chr8: 3924 peaks called 2025-01-31 10:12:31,468 DEBUG chr10: 3830 peaks called 2025-01-31 10:12:31,611 DEBUG chr6: 4063 peaks called 2025-01-31 10:12:32,085 DEBUG chr14: 2584 peaks called 2025-01-31 10:12:33,597 DEBUG chr7: 5183 peaks called 2025-01-31 10:12:34,537 DEBUG chr9: 4470 peaks called 2025-01-31 10:12:37,884 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:12:38,126 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:12:38,209 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:12:39,289 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:12:39,479 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:12:39,962 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:12:45,390 DEBUG chr15: 3239 peaks called 2025-01-31 10:12:46,708 DEBUG chr13: 3864 peaks called 2025-01-31 10:12:46,910 DEBUG chr16: 2642 peaks called 2025-01-31 10:12:47,138 DEBUG chr17: 3556 peaks called 2025-01-31 10:12:47,264 DEBUG chr11: 6438 peaks called 2025-01-31 10:12:48,342 DEBUG chr12: 3063 peaks called 2025-01-31 10:12:49,412 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:12:50,060 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:12:53,306 DEBUG chr19: 2735 peaks called 2025-01-31 10:12:55,208 DEBUG chr18: 2091 peaks called 2025-01-31 10:12:55,966 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:12:55,998 INFO There are 80321 peaks called at FDR=0.05 2025-01-31 10:12:57,556 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:12:57,556 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:13:01,228 DEBUG chr4: Calling hotspots 2025-01-31 10:13:01,245 DEBUG chr5: Calling hotspots 2025-01-31 10:13:01,650 DEBUG chr3: Calling hotspots 2025-01-31 10:13:01,663 DEBUG chrX: Calling hotspots 2025-01-31 10:13:01,809 DEBUG chr2: Calling hotspots 2025-01-31 10:13:02,141 DEBUG chr1: Calling hotspots 2025-01-31 10:13:10,423 DEBUG chr5: 3500 hotspots called 2025-01-31 10:13:11,048 DEBUG chr4: 3615 hotspots called 2025-01-31 10:13:11,737 DEBUG chr3: 2735 hotspots called 2025-01-31 10:13:11,772 DEBUG chrX: 1650 hotspots called 2025-01-31 10:13:12,397 DEBUG chr2: 4458 hotspots called 2025-01-31 10:13:13,472 DEBUG chr6: Calling hotspots 2025-01-31 10:13:13,564 DEBUG chr1: 3627 hotspots called 2025-01-31 10:13:14,315 DEBUG chr8: Calling hotspots 2025-01-31 10:13:14,360 DEBUG chr7: Calling hotspots 2025-01-31 10:13:14,498 DEBUG chr10: Calling hotspots 2025-01-31 10:13:14,947 DEBUG chr14: Calling hotspots 2025-01-31 10:13:16,002 DEBUG chr9: Calling hotspots 2025-01-31 10:13:20,852 DEBUG chr6: 2778 hotspots called 2025-01-31 10:13:20,893 DEBUG chr10: 2597 hotspots called 2025-01-31 10:13:20,915 DEBUG chr14: 1728 hotspots called 2025-01-31 10:13:20,918 DEBUG chr8: 2695 hotspots called 2025-01-31 10:13:21,415 DEBUG chr7: 3527 hotspots called 2025-01-31 10:13:21,692 DEBUG chr9: 3063 hotspots called 2025-01-31 10:13:23,324 DEBUG chr15: Calling hotspots 2025-01-31 10:13:23,433 DEBUG chr13: Calling hotspots 2025-01-31 10:13:23,530 DEBUG chr12: Calling hotspots 2025-01-31 10:13:23,609 DEBUG chr16: Calling hotspots 2025-01-31 10:13:23,657 DEBUG chr11: Calling hotspots 2025-01-31 10:13:23,745 DEBUG chr17: Calling hotspots 2025-01-31 10:13:28,531 DEBUG chr17: 2389 hotspots called 2025-01-31 10:13:28,890 DEBUG chr15: 2214 hotspots called 2025-01-31 10:13:28,955 DEBUG chr16: 1783 hotspots called 2025-01-31 10:13:29,684 DEBUG chr12: 2083 hotspots called 2025-01-31 10:13:30,038 DEBUG chr11: 4386 hotspots called 2025-01-31 10:13:30,085 DEBUG chr13: 2565 hotspots called 2025-01-31 10:13:30,092 DEBUG chr19: Calling hotspots 2025-01-31 10:13:30,236 DEBUG chr18: Calling hotspots 2025-01-31 10:13:32,773 DEBUG chr19: 1853 hotspots called 2025-01-31 10:13:34,072 DEBUG chr18: 1429 hotspots called 2025-01-31 10:13:34,517 DEBUG Results of call_hotspots emitted. 2025-01-31 10:13:34,546 INFO There are 54675 hotspots called at FDR=0.01 2025-01-31 10:13:37,103 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:13:37,103 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:13:46,265 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:13:46,268 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:13:47,090 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:13:47,193 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:13:47,889 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:13:48,250 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:13:59,359 DEBUG chr5: 4260 peaks called 2025-01-31 10:13:59,408 DEBUG chr4: 4379 peaks called 2025-01-31 10:14:00,789 DEBUG chr3: 3409 peaks called 2025-01-31 10:14:01,216 DEBUG chrX: 1977 peaks called 2025-01-31 10:14:03,327 DEBUG chr2: 5434 peaks called 2025-01-31 10:14:04,141 DEBUG chr1: 4437 peaks called 2025-01-31 10:14:08,347 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:14:08,531 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:14:09,018 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:14:09,143 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:14:10,628 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:14:11,265 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:14:19,172 DEBUG chr10: 3224 peaks called 2025-01-31 10:14:19,263 DEBUG chr8: 3329 peaks called 2025-01-31 10:14:19,879 DEBUG chr6: 3376 peaks called 2025-01-31 10:14:19,892 DEBUG chr14: 2107 peaks called 2025-01-31 10:14:19,977 DEBUG chr7: 4419 peaks called 2025-01-31 10:14:20,680 DEBUG chr9: 3776 peaks called 2025-01-31 10:14:25,769 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:14:25,860 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:14:26,048 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:14:26,203 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:14:26,384 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:14:26,459 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:14:32,804 DEBUG chr17: 3024 peaks called 2025-01-31 10:14:32,993 DEBUG chr16: 2205 peaks called 2025-01-31 10:14:33,512 DEBUG chr15: 2685 peaks called 2025-01-31 10:14:34,914 DEBUG chr13: 3229 peaks called 2025-01-31 10:14:35,022 DEBUG chr11: 5515 peaks called 2025-01-31 10:14:35,383 DEBUG chr12: 2537 peaks called 2025-01-31 10:14:36,076 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:14:36,703 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:14:39,782 DEBUG chr19: 2343 peaks called 2025-01-31 10:14:41,684 DEBUG chr18: 1730 peaks called 2025-01-31 10:14:42,724 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:14:42,896 INFO There are 67395 peaks called at FDR=0.01 2025-01-31 10:14:44,159 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:14:44,159 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:47,836 DEBUG chr4: Calling hotspots 2025-01-31 10:14:48,097 DEBUG chr5: Calling hotspots 2025-01-31 10:14:48,201 DEBUG chr3: Calling hotspots 2025-01-31 10:14:48,405 DEBUG chrX: Calling hotspots 2025-01-31 10:14:48,607 DEBUG chr2: Calling hotspots 2025-01-31 10:14:48,916 DEBUG chr1: Calling hotspots 2025-01-31 10:14:56,636 DEBUG chr4: 3093 hotspots called 2025-01-31 10:14:56,983 DEBUG chr5: 3011 hotspots called 2025-01-31 10:14:57,624 DEBUG chr3: 2352 hotspots called 2025-01-31 10:14:58,795 DEBUG chrX: 1349 hotspots called 2025-01-31 10:14:59,315 DEBUG chr2: 3780 hotspots called 2025-01-31 10:15:00,209 DEBUG chr1: 3059 hotspots called 2025-01-31 10:15:00,393 DEBUG chr6: Calling hotspots 2025-01-31 10:15:00,642 DEBUG chr10: Calling hotspots 2025-01-31 10:15:00,661 DEBUG chr7: Calling hotspots 2025-01-31 10:15:01,722 DEBUG chr8: Calling hotspots 2025-01-31 10:15:01,920 DEBUG chr14: Calling hotspots 2025-01-31 10:15:02,274 DEBUG chr9: Calling hotspots 2025-01-31 10:15:05,543 DEBUG chr10: 2232 hotspots called 2025-01-31 10:15:06,360 DEBUG chr7: 3068 hotspots called 2025-01-31 10:15:06,820 DEBUG chr6: 2349 hotspots called 2025-01-31 10:15:06,965 DEBUG chr14: 1471 hotspots called 2025-01-31 10:15:07,339 DEBUG chr8: 2340 hotspots called 2025-01-31 10:15:07,361 DEBUG chr9: 2630 hotspots called 2025-01-31 10:15:07,889 DEBUG chr11: Calling hotspots 2025-01-31 10:15:08,889 DEBUG chr13: Calling hotspots 2025-01-31 10:15:09,252 DEBUG chr15: Calling hotspots 2025-01-31 10:15:09,517 DEBUG chr17: Calling hotspots 2025-01-31 10:15:09,593 DEBUG chr12: Calling hotspots 2025-01-31 10:15:09,611 DEBUG chr16: Calling hotspots 2025-01-31 10:15:13,874 DEBUG chr11: 3774 hotspots called 2025-01-31 10:15:14,343 DEBUG chr16: 1496 hotspots called 2025-01-31 10:15:14,532 DEBUG chr17: 2061 hotspots called 2025-01-31 10:15:14,565 DEBUG chr15: 1881 hotspots called 2025-01-31 10:15:14,777 DEBUG chr13: 2178 hotspots called 2025-01-31 10:15:14,898 DEBUG chr12: 1760 hotspots called 2025-01-31 10:15:15,278 DEBUG chr19: Calling hotspots 2025-01-31 10:15:15,358 DEBUG chr18: Calling hotspots 2025-01-31 10:15:16,603 DEBUG chr19: 1620 hotspots called 2025-01-31 10:15:17,283 DEBUG chr18: 1214 hotspots called 2025-01-31 10:15:17,610 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:17,641 INFO There are 46718 hotspots called at FDR=0.001 2025-01-31 10:15:20,326 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:15:20,327 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:29,000 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:15:29,486 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:15:29,937 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:15:30,470 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:15:30,960 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:15:31,789 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:15:45,263 DEBUG chr3: 2901 peaks called 2025-01-31 10:15:46,127 DEBUG chr5: 3607 peaks called 2025-01-31 10:15:46,344 DEBUG chr4: 3693 peaks called 2025-01-31 10:15:48,574 DEBUG chrX: 1620 peaks called 2025-01-31 10:15:49,132 DEBUG chr2: 4548 peaks called 2025-01-31 10:15:50,378 DEBUG chr1: 3726 peaks called 2025-01-31 10:15:53,600 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:15:54,088 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:15:54,356 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:15:56,583 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:15:56,708 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:15:57,969 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:16:04,134 DEBUG chr10: 2736 peaks called 2025-01-31 10:16:05,630 DEBUG chr7: 3781 peaks called 2025-01-31 10:16:05,844 DEBUG chr14: 1775 peaks called 2025-01-31 10:16:05,955 DEBUG chr6: 2819 peaks called 2025-01-31 10:16:06,068 DEBUG chr8: 2847 peaks called 2025-01-31 10:16:06,289 DEBUG chr9: 3221 peaks called 2025-01-31 10:16:10,312 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:16:11,334 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:16:11,537 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:16:11,542 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:16:12,055 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:16:12,109 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:16:20,392 DEBUG chr17: 2569 peaks called 2025-01-31 10:16:20,411 DEBUG chr16: 1833 peaks called 2025-01-31 10:16:20,576 DEBUG chr11: 4706 peaks called 2025-01-31 10:16:20,618 DEBUG chr15: 2266 peaks called 2025-01-31 10:16:21,696 DEBUG chr12: 2135 peaks called 2025-01-31 10:16:21,955 DEBUG chr13: 2697 peaks called 2025-01-31 10:16:22,987 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:16:23,629 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:16:26,888 DEBUG chr19: 2007 peaks called 2025-01-31 10:16:29,373 DEBUG chr18: 1461 peaks called 2025-01-31 10:16:30,337 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:30,466 INFO There are 56948 peaks called at FDR=0.001 2025-01-31 10:16:31,495 INFO Saving density 2025-01-31 10:16:31,495 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:16:52,376 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:16:56,511 DEBUG Converting density to bigwig 2025-01-31 10:17:39,189 INFO Program finished