2025-01-31 09:31:52,964 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:52,967 INFO Extracting cutcounts from bam file 2025-01-31 09:35:05,390 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:35:05,447 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:35:05,450 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:35:05,452 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:35:05,452 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:35:05,453 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:35:05,453 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:35:07,879 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:35:08,140 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:35:08,325 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:35:08,385 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:35:08,856 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:35:08,919 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:35:09,787 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:35:10,836 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:35:11,224 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:35:11,448 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:35:11,554 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:35:11,570 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:35:12,661 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:35:12,771 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:35:12,791 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:35:13,932 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:35:13,932 INFO Total cutcounts = 30624054 2025-01-31 09:35:13,938 INFO Smoothing signal using MODWT 2025-01-31 09:35:13,939 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:35:13,985 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:13,989 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:13,989 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:13,990 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:13,991 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:35:13,991 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:34,616 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:36,389 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:41,067 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:45,522 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:10,095 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:24,687 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:32,282 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:39,509 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:44,426 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:45,130 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:49,026 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:17,979 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:09,464 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:18,423 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:20,136 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:46,277 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:46,278 INFO Estimating parameters of background model 2025-01-31 09:42:46,278 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:52,180 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:42:52,437 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:42:52,901 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:42:52,945 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:42:54,271 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:42:55,141 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:24,365 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:24,470 DEBUG chr3: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.011 2025-01-31 09:43:24,551 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:24,602 DEBUG chrX: Signal quantile: 0.995. signal threshold: 14. Best RMSEA: 0.013 2025-01-31 09:43:31,282 DEBUG chr3 total SNP count: 266078 2025-01-31 09:43:31,282 DEBUG chr3 length: 160039680 2025-01-31 09:43:31,282 DEBUG ----------------------------------------- 2025-01-31 09:43:31,282 INFO Processing SNPs in chr3 2025-01-31 09:43:31,547 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 266078)] 2025-01-31 09:43:31,734 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:32,391 DEBUG chrX total SNP count: 243048 2025-01-31 09:43:32,391 DEBUG chrX length: 171031299 2025-01-31 09:43:32,391 DEBUG ----------------------------------------- 2025-01-31 09:43:32,391 INFO Processing SNPs in chrX 2025-01-31 09:43:32,781 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32813), (32813, 32815), (32815, 32870), (32870, 173633), (173633, 173636), (173636, 243048)] 2025-01-31 09:43:32,896 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:33,042 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:33,153 DEBUG chr5: Signal quantile: 0.988. signal threshold: 16. Best RMSEA: 0.007 2025-01-31 09:43:36,904 DEBUG Segmenting atomic regions: 2025-01-31 09:43:37,012 DEBUG Processing 1/108 atomic regions from SNP 0 to 602 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:37,908 DEBUG Processing 2/108 atomic regions from SNP 302 to 904 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:38,300 DEBUG Processing 3/108 atomic regions from SNP 604 to 1206 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:38,572 DEBUG chr5 total SNP count: 254704 2025-01-31 09:43:38,572 DEBUG chr5 length: 151834684 2025-01-31 09:43:38,572 DEBUG ----------------------------------------- 2025-01-31 09:43:38,573 INFO Processing SNPs in chr5 2025-01-31 09:43:38,654 DEBUG Processing 4/108 atomic regions from SNP 906 to 1508 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:38,832 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 254704)] 2025-01-31 09:43:39,011 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:39,025 DEBUG Processing 5/108 atomic regions from SNP 1208 to 1809 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:39,401 DEBUG Processing 6/108 atomic regions from SNP 1509 to 2110 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:39,688 DEBUG Processing 7/108 atomic regions from SNP 1810 to 2411 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:39,950 DEBUG Processing 8/108 atomic regions from SNP 2111 to 2712 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:40,329 DEBUG Processing 9/108 atomic regions from SNP 2412 to 3013 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:40,388 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:40,436 DEBUG chr4: Signal quantile: 0.989. signal threshold: 18. Best RMSEA: 0.007 2025-01-31 09:43:40,563 DEBUG Processing 10/108 atomic regions from SNP 2713 to 3314 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:40,788 DEBUG Processing 11/108 atomic regions from SNP 3014 to 3615 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:41,080 DEBUG Processing 12/108 atomic regions from SNP 3315 to 3916 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:41,416 DEBUG Processing 13/108 atomic regions from SNP 3616 to 4217 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:41,782 DEBUG Processing 14/108 atomic regions from SNP 3917 to 4518 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:42,167 DEBUG Processing 15/108 atomic regions from SNP 4218 to 4819 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:42,541 DEBUG Processing 16/108 atomic regions from SNP 4519 to 5120 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:42,875 DEBUG Processing 17/108 atomic regions from SNP 4820 to 5421 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:43,180 DEBUG Processing 18/108 atomic regions from SNP 5121 to 5722 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:43,549 DEBUG Processing 19/108 atomic regions from SNP 5422 to 6023 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:43,843 DEBUG Processing 20/108 atomic regions from SNP 5723 to 6324 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:44,138 DEBUG Processing 21/108 atomic regions from SNP 6024 to 6625 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:44,402 DEBUG Processing 22/108 atomic regions from SNP 6325 to 6926 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:44,851 DEBUG Processing 23/108 atomic regions from SNP 6626 to 7227 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:44,886 DEBUG chr4 total SNP count: 257686 2025-01-31 09:43:44,886 DEBUG chr4 length: 156508116 2025-01-31 09:43:44,886 DEBUG ----------------------------------------- 2025-01-31 09:43:44,886 INFO Processing SNPs in chr4 2025-01-31 09:43:45,140 DEBUG Processing 24/108 atomic regions from SNP 6927 to 7528 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:45,298 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 64744), (64744, 257686)] 2025-01-31 09:43:45,361 DEBUG Processing 25/108 atomic regions from SNP 7228 to 7829 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:45,427 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:45,593 DEBUG Processing 26/108 atomic regions from SNP 7529 to 8130 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:45,905 DEBUG Processing 27/108 atomic regions from SNP 7830 to 8431 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:46,197 DEBUG Processing 28/108 atomic regions from SNP 8131 to 8732 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:46,410 DEBUG Processing 29/108 atomic regions from SNP 8432 to 9033 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:46,739 DEBUG Processing 30/108 atomic regions from SNP 8733 to 9334 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:47,109 DEBUG Processing 31/108 atomic regions from SNP 9034 to 9635 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:47,491 DEBUG Processing 32/108 atomic regions from SNP 9335 to 9936 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:47,877 DEBUG Processing 33/108 atomic regions from SNP 9636 to 10237 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:48,227 DEBUG Processing 34/108 atomic regions from SNP 9937 to 10538 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:48,601 DEBUG Processing 35/108 atomic regions from SNP 10238 to 10839 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:49,035 DEBUG Processing 36/108 atomic regions from SNP 10539 to 11140 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:49,449 DEBUG Processing 37/108 atomic regions from SNP 10840 to 11441 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:49,865 DEBUG Processing 38/108 atomic regions from SNP 11141 to 11742 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:50,288 DEBUG Processing 39/108 atomic regions from SNP 11442 to 12043 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:50,625 DEBUG Processing 40/108 atomic regions from SNP 11743 to 12344 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:50,825 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:43:50,838 DEBUG chr1: Signal quantile: 0.991. signal threshold: 17. Best RMSEA: 0.009 2025-01-31 09:43:50,954 DEBUG Processing 41/108 atomic regions from SNP 12044 to 12645 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:51,359 DEBUG Processing 42/108 atomic regions from SNP 12345 to 12946 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:51,786 DEBUG Processing 43/108 atomic regions from SNP 12646 to 13247 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,209 DEBUG Processing 44/108 atomic regions from SNP 12947 to 13548 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,643 DEBUG Processing 45/108 atomic regions from SNP 13248 to 13849 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,071 DEBUG Processing 46/108 atomic regions from SNP 13549 to 14150 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,258 DEBUG Segmenting atomic regions: 2025-01-31 09:43:53,373 DEBUG Processing 1/214 atomic regions from SNP 0 to 602 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:53,514 DEBUG Processing 47/108 atomic regions from SNP 13850 to 14451 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,936 DEBUG Processing 48/108 atomic regions from SNP 14151 to 14752 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:54,362 DEBUG Processing 49/108 atomic regions from SNP 14452 to 15053 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:54,518 DEBUG Processing 2/214 atomic regions from SNP 302 to 904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:54,738 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:43:54,756 DEBUG Processing 50/108 atomic regions from SNP 14753 to 15354 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:54,814 DEBUG chr2: Signal quantile: 0.987. signal threshold: 15. Best RMSEA: 0.009 2025-01-31 09:43:54,821 DEBUG Processing 3/214 atomic regions from SNP 604 to 1206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,024 DEBUG Processing 51/108 atomic regions from SNP 15054 to 15655 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,152 DEBUG Processing 4/214 atomic regions from SNP 906 to 1508 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,244 DEBUG Processing 52/108 atomic regions from SNP 15355 to 15956 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,512 DEBUG Processing 5/214 atomic regions from SNP 1208 to 1810 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,570 DEBUG Processing 53/108 atomic regions from SNP 15656 to 16257 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,841 DEBUG Processing 6/214 atomic regions from SNP 1510 to 2112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:55,939 DEBUG Processing 54/108 atomic regions from SNP 15957 to 16558 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,116 DEBUG Processing 7/214 atomic regions from SNP 1812 to 2414 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,301 DEBUG Processing 55/108 atomic regions from SNP 16258 to 16859 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,465 DEBUG Processing 8/214 atomic regions from SNP 2114 to 2716 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,568 DEBUG Processing 56/108 atomic regions from SNP 16559 to 17160 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,870 DEBUG Processing 9/214 atomic regions from SNP 2416 to 3018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:56,937 DEBUG Processing 57/108 atomic regions from SNP 16860 to 17461 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,211 DEBUG Processing 10/214 atomic regions from SNP 2718 to 3320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,369 DEBUG Processing 58/108 atomic regions from SNP 17161 to 17762 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,490 DEBUG Processing 11/214 atomic regions from SNP 3020 to 3622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:57,787 DEBUG Processing 59/108 atomic regions from SNP 17462 to 18063 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,929 DEBUG Processing 12/214 atomic regions from SNP 3322 to 3924 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,038 DEBUG chr1 total SNP count: 337913 2025-01-31 09:43:58,038 DEBUG chr1 length: 195471971 2025-01-31 09:43:58,038 DEBUG ----------------------------------------- 2025-01-31 09:43:58,038 INFO Processing SNPs in chr1 2025-01-31 09:43:58,080 DEBUG Processing 60/108 atomic regions from SNP 17763 to 18364 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,331 DEBUG Processing 13/214 atomic regions from SNP 3624 to 4226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,353 DEBUG Processing 61/108 atomic regions from SNP 18064 to 18665 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,382 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 337913)] 2025-01-31 09:43:58,619 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:58,684 DEBUG Processing 14/214 atomic regions from SNP 3926 to 4528 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,687 DEBUG Processing 62/108 atomic regions from SNP 18365 to 18966 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,954 DEBUG Processing 63/108 atomic regions from SNP 18666 to 19267 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,963 DEBUG Processing 15/214 atomic regions from SNP 4228 to 4830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,201 DEBUG Processing 64/108 atomic regions from SNP 18967 to 19568 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:59,228 DEBUG Processing 16/214 atomic regions from SNP 4530 to 5132 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,471 DEBUG Processing 65/108 atomic regions from SNP 19268 to 19869 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:59,497 DEBUG Processing 17/214 atomic regions from SNP 4832 to 5434 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,758 DEBUG Processing 66/108 atomic regions from SNP 19569 to 20170 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:59,814 DEBUG Processing 18/214 atomic regions from SNP 5134 to 5736 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,987 DEBUG Processing 67/108 atomic regions from SNP 19870 to 20471 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,119 DEBUG Processing 19/214 atomic regions from SNP 5436 to 6038 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,233 DEBUG Processing 68/108 atomic regions from SNP 20171 to 20772 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,260 DEBUG chr2 total SNP count: 312304 2025-01-31 09:44:00,260 DEBUG chr2 length: 182113224 2025-01-31 09:44:00,260 DEBUG ----------------------------------------- 2025-01-31 09:44:00,260 INFO Processing SNPs in chr2 2025-01-31 09:44:00,380 DEBUG Processing 20/214 atomic regions from SNP 5738 to 6340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,466 DEBUG Processing 69/108 atomic regions from SNP 20472 to 21073 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,609 DEBUG Processing 21/214 atomic regions from SNP 6040 to 6642 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,692 DEBUG Processing 70/108 atomic regions from SNP 20773 to 21374 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,757 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 304430), (304430, 312304)] 2025-01-31 09:44:00,844 DEBUG Processing 22/214 atomic regions from SNP 6342 to 6944 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,919 DEBUG Processing 71/108 atomic regions from SNP 21074 to 21675 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,977 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:01,085 DEBUG Processing 23/214 atomic regions from SNP 6644 to 7246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,147 DEBUG Processing 72/108 atomic regions from SNP 21375 to 21976 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,319 DEBUG Processing 24/214 atomic regions from SNP 6946 to 7548 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,387 DEBUG Processing 73/108 atomic regions from SNP 21676 to 22277 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,551 DEBUG Processing 25/214 atomic regions from SNP 7248 to 7850 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,657 DEBUG Processing 74/108 atomic regions from SNP 21977 to 22578 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,779 DEBUG Processing 26/214 atomic regions from SNP 7550 to 8152 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,882 DEBUG Processing 75/108 atomic regions from SNP 22278 to 22879 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,011 DEBUG Processing 27/214 atomic regions from SNP 7852 to 8454 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,103 DEBUG Processing 76/108 atomic regions from SNP 22579 to 23180 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,248 DEBUG Processing 28/214 atomic regions from SNP 8154 to 8756 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,323 DEBUG Processing 77/108 atomic regions from SNP 22880 to 23481 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,482 DEBUG Processing 29/214 atomic regions from SNP 8456 to 9058 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,552 DEBUG Processing 78/108 atomic regions from SNP 23181 to 23782 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,713 DEBUG Processing 30/214 atomic regions from SNP 8758 to 9359 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,781 DEBUG Processing 79/108 atomic regions from SNP 23482 to 24083 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,968 DEBUG Processing 31/214 atomic regions from SNP 9059 to 9660 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,005 DEBUG Processing 80/108 atomic regions from SNP 23783 to 24384 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,204 DEBUG Processing 32/214 atomic regions from SNP 9360 to 9961 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,230 DEBUG Processing 81/108 atomic regions from SNP 24084 to 24685 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,436 DEBUG Processing 33/214 atomic regions from SNP 9661 to 10262 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,452 DEBUG Processing 82/108 atomic regions from SNP 24385 to 24986 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,669 DEBUG Processing 34/214 atomic regions from SNP 9962 to 10563 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,676 DEBUG Processing 83/108 atomic regions from SNP 24686 to 25287 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,903 DEBUG Processing 84/108 atomic regions from SNP 24987 to 25588 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,907 DEBUG Processing 35/214 atomic regions from SNP 10263 to 10864 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,136 DEBUG Processing 85/108 atomic regions from SNP 25288 to 25889 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,149 DEBUG Processing 36/214 atomic regions from SNP 10564 to 11165 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,188 DEBUG Segmenting atomic regions: 2025-01-31 09:44:04,306 DEBUG Processing 1/885 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,387 DEBUG Processing 86/108 atomic regions from SNP 25589 to 26190 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,401 DEBUG Processing 37/214 atomic regions from SNP 10865 to 11466 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,632 DEBUG Processing 38/214 atomic regions from SNP 11166 to 11767 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,633 DEBUG Processing 87/108 atomic regions from SNP 25890 to 26491 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,859 DEBUG Processing 39/214 atomic regions from SNP 11467 to 12068 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,879 DEBUG Processing 88/108 atomic regions from SNP 26191 to 26792 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,090 DEBUG Processing 40/214 atomic regions from SNP 11768 to 12369 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,101 DEBUG Processing 2/885 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,113 DEBUG Processing 89/108 atomic regions from SNP 26492 to 27093 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,331 DEBUG Processing 41/214 atomic regions from SNP 12069 to 12670 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,337 DEBUG Processing 3/885 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,346 DEBUG Processing 90/108 atomic regions from SNP 26793 to 27394 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,573 DEBUG Processing 42/214 atomic regions from SNP 12370 to 12971 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,573 DEBUG Processing 4/885 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,577 DEBUG Processing 91/108 atomic regions from SNP 27094 to 27695 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,811 DEBUG Processing 92/108 atomic regions from SNP 27395 to 27996 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,812 DEBUG Processing 5/885 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,818 DEBUG Processing 43/214 atomic regions from SNP 12671 to 13272 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,047 DEBUG Processing 93/108 atomic regions from SNP 27696 to 28297 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,057 DEBUG Processing 6/885 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,077 DEBUG Processing 44/214 atomic regions from SNP 12972 to 13573 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,289 DEBUG Processing 94/108 atomic regions from SNP 27997 to 28598 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,304 DEBUG Processing 7/885 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,347 DEBUG Processing 45/214 atomic regions from SNP 13273 to 13874 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,527 DEBUG Processing 95/108 atomic regions from SNP 28298 to 28899 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,550 DEBUG Processing 8/885 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,609 DEBUG Processing 46/214 atomic regions from SNP 13574 to 14175 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,756 DEBUG Processing 96/108 atomic regions from SNP 28599 to 29200 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,794 DEBUG Processing 9/885 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,845 DEBUG Processing 47/214 atomic regions from SNP 13875 to 14476 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,988 DEBUG Processing 97/108 atomic regions from SNP 28900 to 29501 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,038 DEBUG Processing 10/885 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,084 DEBUG Processing 48/214 atomic regions from SNP 14176 to 14777 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,220 DEBUG Processing 98/108 atomic regions from SNP 29201 to 29802 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,284 DEBUG Processing 11/885 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,322 DEBUG Processing 49/214 atomic regions from SNP 14477 to 15078 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,449 DEBUG Processing 99/108 atomic regions from SNP 29502 to 30103 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,535 DEBUG Processing 12/885 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,563 DEBUG Processing 50/214 atomic regions from SNP 14778 to 15379 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,673 DEBUG Processing 100/108 atomic regions from SNP 29803 to 30404 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,784 DEBUG Processing 13/885 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,808 DEBUG Processing 51/214 atomic regions from SNP 15079 to 15680 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,897 DEBUG Processing 101/108 atomic regions from SNP 30104 to 30705 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,035 DEBUG Processing 14/885 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,063 DEBUG Processing 52/214 atomic regions from SNP 15380 to 15981 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,131 DEBUG Processing 102/108 atomic regions from SNP 30405 to 31006 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,278 DEBUG Processing 15/885 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,301 DEBUG Processing 53/214 atomic regions from SNP 15681 to 16282 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,371 DEBUG Processing 103/108 atomic regions from SNP 30706 to 31307 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,509 DEBUG Processing 16/885 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,527 DEBUG Processing 54/214 atomic regions from SNP 15982 to 16583 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,607 DEBUG Processing 104/108 atomic regions from SNP 31007 to 31608 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,739 DEBUG Processing 17/885 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,756 DEBUG Processing 55/214 atomic regions from SNP 16283 to 16884 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,825 DEBUG Processing 105/108 atomic regions from SNP 31308 to 31909 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,979 DEBUG Processing 18/885 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,996 DEBUG Processing 56/214 atomic regions from SNP 16584 to 17185 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,046 DEBUG Processing 106/108 atomic regions from SNP 31609 to 32210 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,228 DEBUG Processing 19/885 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,247 DEBUG Processing 57/214 atomic regions from SNP 16885 to 17486 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,281 DEBUG Processing 107/108 atomic regions from SNP 31910 to 32511 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,477 DEBUG Processing 20/885 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,493 DEBUG Processing 58/214 atomic regions from SNP 17186 to 17787 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,524 DEBUG Processing 108/108 atomic regions from SNP 32211 to 32812 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,650 DEBUG Unique SNPs positions in subchromosome 1: 32813 2025-01-31 09:44:09,719 DEBUG Processing 21/885 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,724 DEBUG Subchromosome time: 36.82767238467932, subchromosome SNPs: 32813 2025-01-31 09:44:09,738 DEBUG Processing 59/214 atomic regions from SNP 17487 to 18088 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,761 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:09,958 DEBUG Processing 22/885 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,996 DEBUG Processing 60/214 atomic regions from SNP 17788 to 18389 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,198 DEBUG Processing 23/885 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,254 DEBUG Processing 61/214 atomic regions from SNP 18089 to 18690 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,375 DEBUG Segmenting atomic regions: 2025-01-31 09:44:10,444 DEBUG Processing 24/885 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,490 DEBUG Processing 1/848 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,495 DEBUG Processing 62/214 atomic regions from SNP 18390 to 18991 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,689 DEBUG Processing 25/885 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,746 DEBUG Processing 63/214 atomic regions from SNP 18691 to 19292 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,927 DEBUG Processing 26/885 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,983 DEBUG Processing 64/214 atomic regions from SNP 18992 to 19593 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,166 DEBUG Processing 27/885 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,219 DEBUG Processing 65/214 atomic regions from SNP 19293 to 19894 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,288 DEBUG Processing 2/848 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,411 DEBUG Processing 28/885 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,454 DEBUG Processing 66/214 atomic regions from SNP 19594 to 20195 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,519 DEBUG Processing 3/848 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,658 DEBUG Processing 29/885 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,688 DEBUG Processing 67/214 atomic regions from SNP 19895 to 20496 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,757 DEBUG Processing 4/848 atomic regions from SNP 903 to 1503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,906 DEBUG Processing 30/885 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,925 DEBUG Processing 68/214 atomic regions from SNP 20196 to 20797 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,989 DEBUG Processing 5/848 atomic regions from SNP 1203 to 1803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,150 DEBUG Processing 31/885 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,161 DEBUG Processing 69/214 atomic regions from SNP 20497 to 21098 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,231 DEBUG Processing 6/848 atomic regions from SNP 1503 to 2103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,399 DEBUG Processing 70/214 atomic regions from SNP 20798 to 21399 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,412 DEBUG Processing 32/885 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,475 DEBUG Processing 7/848 atomic regions from SNP 1803 to 2403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,630 DEBUG Processing 71/214 atomic regions from SNP 21099 to 21700 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,667 DEBUG Processing 33/885 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,719 DEBUG Processing 8/848 atomic regions from SNP 2103 to 2703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,863 DEBUG Processing 72/214 atomic regions from SNP 21400 to 22001 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,902 DEBUG Processing 34/885 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,957 DEBUG Processing 9/848 atomic regions from SNP 2403 to 3003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,098 DEBUG Processing 73/214 atomic regions from SNP 21701 to 22302 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,134 DEBUG Processing 35/885 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,187 DEBUG Processing 10/848 atomic regions from SNP 2703 to 3303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,346 DEBUG Processing 74/214 atomic regions from SNP 22002 to 22603 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,382 DEBUG Processing 36/885 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,420 DEBUG Processing 11/848 atomic regions from SNP 3003 to 3603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,579 DEBUG Processing 75/214 atomic regions from SNP 22303 to 22904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,630 DEBUG Processing 37/885 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,658 DEBUG Processing 12/848 atomic regions from SNP 3303 to 3903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,817 DEBUG Processing 76/214 atomic regions from SNP 22604 to 23205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,878 DEBUG Processing 38/885 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,900 DEBUG Processing 13/848 atomic regions from SNP 3603 to 4203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,055 DEBUG Processing 77/214 atomic regions from SNP 22905 to 23506 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,129 DEBUG Processing 39/885 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,144 DEBUG Processing 14/848 atomic regions from SNP 3903 to 4503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,296 DEBUG Processing 78/214 atomic regions from SNP 23206 to 23807 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,384 DEBUG Processing 15/848 atomic regions from SNP 4203 to 4803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,389 DEBUG Processing 40/885 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,536 DEBUG Processing 79/214 atomic regions from SNP 23507 to 24108 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,622 DEBUG Processing 16/848 atomic regions from SNP 4503 to 5103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,650 DEBUG Processing 41/885 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,772 DEBUG Processing 80/214 atomic regions from SNP 23808 to 24409 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,854 DEBUG Processing 17/848 atomic regions from SNP 4803 to 5403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,890 DEBUG Processing 42/885 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,004 DEBUG Processing 81/214 atomic regions from SNP 24109 to 24710 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,087 DEBUG Processing 18/848 atomic regions from SNP 5103 to 5703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,127 DEBUG Processing 43/885 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,236 DEBUG Processing 82/214 atomic regions from SNP 24410 to 25011 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,321 DEBUG Processing 19/848 atomic regions from SNP 5403 to 6003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,365 DEBUG Processing 44/885 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,472 DEBUG Processing 83/214 atomic regions from SNP 24711 to 25312 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,560 DEBUG Processing 20/848 atomic regions from SNP 5703 to 6303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,605 DEBUG Processing 45/885 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,705 DEBUG Processing 84/214 atomic regions from SNP 25012 to 25613 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,801 DEBUG Processing 21/848 atomic regions from SNP 6003 to 6603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,847 DEBUG Processing 46/885 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,932 DEBUG Processing 85/214 atomic regions from SNP 25313 to 25914 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,042 DEBUG Processing 22/848 atomic regions from SNP 6303 to 6903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,092 DEBUG Processing 47/885 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,157 DEBUG Processing 86/214 atomic regions from SNP 25614 to 26215 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,284 DEBUG Processing 23/848 atomic regions from SNP 6603 to 7203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,341 DEBUG Processing 48/885 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,397 DEBUG Processing 87/214 atomic regions from SNP 25915 to 26516 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,518 DEBUG Processing 24/848 atomic regions from SNP 6903 to 7503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,587 DEBUG Processing 49/885 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,645 DEBUG Processing 88/214 atomic regions from SNP 26216 to 26817 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,747 DEBUG Processing 25/848 atomic regions from SNP 7203 to 7803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,828 DEBUG Processing 50/885 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,889 DEBUG Processing 89/214 atomic regions from SNP 26517 to 27118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,982 DEBUG Processing 26/848 atomic regions from SNP 7503 to 8103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,065 DEBUG Processing 51/885 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,130 DEBUG Processing 90/214 atomic regions from SNP 26818 to 27419 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,219 DEBUG Processing 27/848 atomic regions from SNP 7803 to 8403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,303 DEBUG Processing 52/885 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,372 DEBUG Processing 91/214 atomic regions from SNP 27119 to 27720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,463 DEBUG Processing 28/848 atomic regions from SNP 8103 to 8703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,544 DEBUG Processing 53/885 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,615 DEBUG Processing 92/214 atomic regions from SNP 27420 to 28021 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,695 DEBUG Processing 29/848 atomic regions from SNP 8403 to 9003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,787 DEBUG Processing 54/885 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,866 DEBUG Processing 93/214 atomic regions from SNP 27721 to 28322 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,925 DEBUG Processing 30/848 atomic regions from SNP 8703 to 9303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,028 DEBUG Processing 55/885 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,126 DEBUG Processing 94/214 atomic regions from SNP 28022 to 28623 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,158 DEBUG Processing 31/848 atomic regions from SNP 9003 to 9603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,267 DEBUG Processing 56/885 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,370 DEBUG Processing 95/214 atomic regions from SNP 28323 to 28924 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,396 DEBUG Processing 32/848 atomic regions from SNP 9303 to 9903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,507 DEBUG Processing 57/885 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,609 DEBUG Processing 96/214 atomic regions from SNP 28624 to 29225 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,628 DEBUG Processing 33/848 atomic regions from SNP 9603 to 10203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,750 DEBUG Processing 58/885 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,845 DEBUG Processing 97/214 atomic regions from SNP 28925 to 29526 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,863 DEBUG Processing 34/848 atomic regions from SNP 9903 to 10503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,991 DEBUG Processing 59/885 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,086 DEBUG Processing 98/214 atomic regions from SNP 29226 to 29827 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,098 DEBUG Processing 35/848 atomic regions from SNP 10203 to 10803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,233 DEBUG Processing 60/885 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,331 DEBUG Processing 36/848 atomic regions from SNP 10503 to 11103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,335 DEBUG Processing 99/214 atomic regions from SNP 29527 to 30128 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,474 DEBUG Processing 61/885 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,563 DEBUG Processing 37/848 atomic regions from SNP 10803 to 11403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,582 DEBUG Processing 100/214 atomic regions from SNP 29828 to 30429 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,717 DEBUG Processing 62/885 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,803 DEBUG Processing 38/848 atomic regions from SNP 11103 to 11703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,823 DEBUG Processing 101/214 atomic regions from SNP 30129 to 30730 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,952 DEBUG Processing 63/885 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,048 DEBUG Processing 39/848 atomic regions from SNP 11403 to 12003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,062 DEBUG Processing 102/214 atomic regions from SNP 30430 to 31031 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,183 DEBUG Processing 64/885 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,291 DEBUG Processing 40/848 atomic regions from SNP 11703 to 12303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,315 DEBUG Processing 103/214 atomic regions from SNP 30731 to 31332 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,436 DEBUG Processing 65/885 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,531 DEBUG Processing 41/848 atomic regions from SNP 12003 to 12603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,581 DEBUG Processing 104/214 atomic regions from SNP 31032 to 31633 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,670 DEBUG Processing 66/885 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,762 DEBUG Processing 42/848 atomic regions from SNP 12303 to 12903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,826 DEBUG Processing 105/214 atomic regions from SNP 31333 to 31934 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,911 DEBUG Processing 67/885 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,994 DEBUG Processing 43/848 atomic regions from SNP 12603 to 13203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,068 DEBUG Processing 106/214 atomic regions from SNP 31634 to 32235 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,153 DEBUG Processing 68/885 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,234 DEBUG Processing 44/848 atomic regions from SNP 12903 to 13503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,312 DEBUG Processing 107/214 atomic regions from SNP 31935 to 32536 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,393 DEBUG Processing 69/885 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,475 DEBUG Processing 45/848 atomic regions from SNP 13203 to 13803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,546 DEBUG Processing 108/214 atomic regions from SNP 32236 to 32837 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,628 DEBUG Processing 70/885 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,713 DEBUG Processing 46/848 atomic regions from SNP 13503 to 14103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,778 DEBUG Processing 109/214 atomic regions from SNP 32537 to 33138 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,863 DEBUG Processing 71/885 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,949 DEBUG Processing 47/848 atomic regions from SNP 13803 to 14403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,011 DEBUG Processing 110/214 atomic regions from SNP 32838 to 33439 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,104 DEBUG Processing 72/885 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,178 DEBUG Processing 48/848 atomic regions from SNP 14103 to 14703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,248 DEBUG Processing 111/214 atomic regions from SNP 33139 to 33740 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,352 DEBUG Processing 73/885 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,413 DEBUG Processing 49/848 atomic regions from SNP 14403 to 15003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,487 DEBUG Processing 112/214 atomic regions from SNP 33440 to 34041 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,595 DEBUG Processing 74/885 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,651 DEBUG Processing 50/848 atomic regions from SNP 14703 to 15303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,725 DEBUG Processing 113/214 atomic regions from SNP 33741 to 34342 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,837 DEBUG Processing 75/885 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,891 DEBUG Processing 51/848 atomic regions from SNP 15003 to 15603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,960 DEBUG Processing 114/214 atomic regions from SNP 34042 to 34643 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,085 DEBUG Processing 76/885 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,134 DEBUG Processing 52/848 atomic regions from SNP 15303 to 15903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,195 DEBUG Processing 115/214 atomic regions from SNP 34343 to 34944 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,324 DEBUG Processing 77/885 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,375 DEBUG Processing 53/848 atomic regions from SNP 15603 to 16203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,435 DEBUG Processing 116/214 atomic regions from SNP 34644 to 35245 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,559 DEBUG Processing 78/885 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,611 DEBUG Processing 54/848 atomic regions from SNP 15903 to 16503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,680 DEBUG Processing 117/214 atomic regions from SNP 34945 to 35546 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,794 DEBUG Processing 79/885 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,841 DEBUG Processing 55/848 atomic regions from SNP 16203 to 16803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,928 DEBUG Processing 118/214 atomic regions from SNP 35246 to 35847 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,030 DEBUG Processing 80/885 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,069 DEBUG Processing 56/848 atomic regions from SNP 16503 to 17103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,170 DEBUG Processing 119/214 atomic regions from SNP 35547 to 36148 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,270 DEBUG Processing 81/885 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,296 DEBUG Processing 57/848 atomic regions from SNP 16803 to 17403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,407 DEBUG Processing 120/214 atomic regions from SNP 35848 to 36449 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,512 DEBUG Processing 82/885 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,529 DEBUG Processing 58/848 atomic regions from SNP 17103 to 17703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,640 DEBUG Processing 121/214 atomic regions from SNP 36149 to 36750 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,754 DEBUG Processing 83/885 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,759 DEBUG Processing 59/848 atomic regions from SNP 17403 to 18003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,877 DEBUG Processing 122/214 atomic regions from SNP 36450 to 37051 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,995 DEBUG Processing 60/848 atomic regions from SNP 17703 to 18303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,998 DEBUG Processing 84/885 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,116 DEBUG Processing 123/214 atomic regions from SNP 36751 to 37352 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,237 DEBUG Processing 61/848 atomic regions from SNP 18003 to 18603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,246 DEBUG Processing 85/885 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,348 DEBUG Processing 124/214 atomic regions from SNP 37052 to 37653 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,474 DEBUG Processing 62/848 atomic regions from SNP 18303 to 18903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,489 DEBUG Processing 86/885 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,581 DEBUG Processing 125/214 atomic regions from SNP 37353 to 37954 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,709 DEBUG Processing 63/848 atomic regions from SNP 18603 to 19203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,759 DEBUG Processing 87/885 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,816 DEBUG Processing 126/214 atomic regions from SNP 37654 to 38255 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,942 DEBUG Processing 64/848 atomic regions from SNP 18903 to 19503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,998 DEBUG Processing 88/885 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,054 DEBUG Processing 127/214 atomic regions from SNP 37955 to 38556 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,174 DEBUG Processing 65/848 atomic regions from SNP 19203 to 19803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,252 DEBUG Processing 89/885 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,301 DEBUG Processing 128/214 atomic regions from SNP 38256 to 38857 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,405 DEBUG Processing 66/848 atomic regions from SNP 19503 to 20103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,518 DEBUG Processing 90/885 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,548 DEBUG Processing 129/214 atomic regions from SNP 38557 to 39158 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,637 DEBUG Processing 67/848 atomic regions from SNP 19803 to 20403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,753 DEBUG Processing 91/885 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,790 DEBUG Processing 130/214 atomic regions from SNP 38858 to 39459 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,875 DEBUG Processing 68/848 atomic regions from SNP 20103 to 20703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,990 DEBUG Processing 92/885 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,025 DEBUG Processing 131/214 atomic regions from SNP 39159 to 39760 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,112 DEBUG Processing 69/848 atomic regions from SNP 20403 to 21003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,224 DEBUG Processing 93/885 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,255 DEBUG Processing 132/214 atomic regions from SNP 39460 to 40061 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,351 DEBUG Processing 70/848 atomic regions from SNP 20703 to 21303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,460 DEBUG Processing 94/885 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,496 DEBUG Processing 133/214 atomic regions from SNP 39761 to 40362 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,506 DEBUG Segmenting atomic regions: 2025-01-31 09:44:27,587 DEBUG Processing 71/848 atomic regions from SNP 21003 to 21603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,614 DEBUG Processing 1/468 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,699 DEBUG Processing 95/885 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,739 DEBUG Processing 134/214 atomic regions from SNP 40062 to 40663 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,819 DEBUG Processing 72/848 atomic regions from SNP 21303 to 21903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,841 DEBUG Processing 2/468 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:27,943 DEBUG Processing 96/885 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,988 DEBUG Processing 135/214 atomic regions from SNP 40363 to 40964 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,055 DEBUG Processing 73/848 atomic regions from SNP 21603 to 22203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,063 DEBUG Processing 3/468 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,184 DEBUG Processing 97/885 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,245 DEBUG Processing 136/214 atomic regions from SNP 40664 to 41265 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,292 DEBUG Processing 74/848 atomic regions from SNP 21903 to 22503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,301 DEBUG Processing 4/468 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,422 DEBUG Processing 98/885 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,491 DEBUG Processing 137/214 atomic regions from SNP 40965 to 41566 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,527 DEBUG Processing 75/848 atomic regions from SNP 22203 to 22803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,541 DEBUG Processing 5/468 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,662 DEBUG Processing 99/885 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,734 DEBUG Processing 138/214 atomic regions from SNP 41266 to 41867 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,762 DEBUG Processing 76/848 atomic regions from SNP 22503 to 23103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,780 DEBUG Processing 6/468 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:28,902 DEBUG Processing 100/885 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,980 DEBUG Processing 139/214 atomic regions from SNP 41567 to 42168 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,997 DEBUG Processing 77/848 atomic regions from SNP 22803 to 23403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,023 DEBUG Processing 7/468 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,143 DEBUG Processing 101/885 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,229 DEBUG Processing 140/214 atomic regions from SNP 41868 to 42469 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,237 DEBUG Processing 78/848 atomic regions from SNP 23103 to 23703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,273 DEBUG Processing 8/468 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,380 DEBUG Processing 102/885 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,480 DEBUG Processing 79/848 atomic regions from SNP 23403 to 24003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,483 DEBUG Processing 141/214 atomic regions from SNP 42169 to 42770 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,539 DEBUG Processing 9/468 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,628 DEBUG Processing 103/885 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,718 DEBUG Processing 80/848 atomic regions from SNP 23703 to 24303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,727 DEBUG Processing 142/214 atomic regions from SNP 42470 to 43071 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,823 DEBUG Processing 10/468 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:29,876 DEBUG Processing 104/885 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,950 DEBUG Processing 81/848 atomic regions from SNP 24003 to 24603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,961 DEBUG Processing 143/214 atomic regions from SNP 42771 to 43372 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,091 DEBUG Processing 11/468 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,120 DEBUG Processing 105/885 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,187 DEBUG Processing 82/848 atomic regions from SNP 24303 to 24903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,194 DEBUG Processing 144/214 atomic regions from SNP 43072 to 43673 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,357 DEBUG Processing 12/468 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,361 DEBUG Processing 106/885 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,423 DEBUG Processing 83/848 atomic regions from SNP 24603 to 25203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,440 DEBUG Processing 145/214 atomic regions from SNP 43373 to 43974 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,602 DEBUG Processing 107/885 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,616 DEBUG Processing 13/468 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,657 DEBUG Processing 84/848 atomic regions from SNP 24903 to 25503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,679 DEBUG Processing 146/214 atomic regions from SNP 43674 to 44275 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,850 DEBUG Processing 108/885 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,878 DEBUG Processing 14/468 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:30,895 DEBUG Processing 85/848 atomic regions from SNP 25203 to 25803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,918 DEBUG Processing 147/214 atomic regions from SNP 43975 to 44576 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,096 DEBUG Processing 109/885 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,122 DEBUG Processing 15/468 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,140 DEBUG Processing 86/848 atomic regions from SNP 25503 to 26103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,158 DEBUG Processing 148/214 atomic regions from SNP 44276 to 44877 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,345 DEBUG Processing 110/885 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,405 DEBUG Processing 16/468 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,429 DEBUG Processing 87/848 atomic regions from SNP 25803 to 26403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,445 DEBUG Processing 149/214 atomic regions from SNP 44577 to 45178 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,578 DEBUG Processing 111/885 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,681 DEBUG Processing 17/468 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,704 DEBUG Processing 88/848 atomic regions from SNP 26103 to 26703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,725 DEBUG Processing 150/214 atomic regions from SNP 44878 to 45479 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,834 DEBUG Processing 112/885 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,931 DEBUG Processing 89/848 atomic regions from SNP 26403 to 27003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,937 DEBUG Processing 18/468 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:31,965 DEBUG Processing 151/214 atomic regions from SNP 45179 to 45780 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,101 DEBUG Processing 113/885 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,164 DEBUG Processing 90/848 atomic regions from SNP 26703 to 27303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,180 DEBUG Processing 19/468 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,211 DEBUG Processing 152/214 atomic regions from SNP 45480 to 46081 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,344 DEBUG Processing 114/885 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,415 DEBUG Processing 20/468 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,416 DEBUG Processing 91/848 atomic regions from SNP 27003 to 27603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,459 DEBUG Processing 153/214 atomic regions from SNP 45781 to 46382 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,582 DEBUG Processing 115/885 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,647 DEBUG Processing 21/468 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,675 DEBUG Processing 92/848 atomic regions from SNP 27303 to 27903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,703 DEBUG Processing 154/214 atomic regions from SNP 46082 to 46683 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,815 DEBUG Processing 116/885 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,874 DEBUG Processing 22/468 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:32,908 DEBUG Processing 93/848 atomic regions from SNP 27603 to 28203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,945 DEBUG Processing 155/214 atomic regions from SNP 46383 to 46984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,055 DEBUG Processing 117/885 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,106 DEBUG Processing 23/468 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,139 DEBUG Processing 94/848 atomic regions from SNP 27903 to 28503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,185 DEBUG Processing 156/214 atomic regions from SNP 46684 to 47285 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,304 DEBUG Processing 118/885 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,338 DEBUG Processing 24/468 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,378 DEBUG Processing 95/848 atomic regions from SNP 28203 to 28803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,428 DEBUG Processing 157/214 atomic regions from SNP 46985 to 47586 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,555 DEBUG Processing 119/885 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,578 DEBUG Processing 25/468 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,631 DEBUG Processing 96/848 atomic regions from SNP 28503 to 29103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,672 DEBUG Processing 158/214 atomic regions from SNP 47286 to 47887 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,846 DEBUG Processing 120/885 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,855 DEBUG Processing 26/468 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:33,898 DEBUG Processing 97/848 atomic regions from SNP 28803 to 29403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,921 DEBUG Processing 159/214 atomic regions from SNP 47587 to 48188 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,111 DEBUG Processing 27/468 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,113 DEBUG Processing 121/885 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,173 DEBUG Processing 98/848 atomic regions from SNP 29103 to 29703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,182 DEBUG Processing 160/214 atomic regions from SNP 47888 to 48489 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,340 DEBUG Processing 28/468 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,364 DEBUG Processing 122/885 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,417 DEBUG Processing 161/214 atomic regions from SNP 48189 to 48790 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,422 DEBUG Processing 99/848 atomic regions from SNP 29403 to 30003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,584 DEBUG Processing 29/468 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,602 DEBUG Processing 123/885 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,652 DEBUG Processing 162/214 atomic regions from SNP 48490 to 49091 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,705 DEBUG Processing 100/848 atomic regions from SNP 29703 to 30303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,832 DEBUG Processing 30/468 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,845 DEBUG Processing 124/885 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,897 DEBUG Processing 163/214 atomic regions from SNP 48791 to 49392 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,933 DEBUG Processing 101/848 atomic regions from SNP 30003 to 30603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,098 DEBUG Processing 31/468 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,121 DEBUG Processing 125/885 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,152 DEBUG Processing 164/214 atomic regions from SNP 49092 to 49693 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,187 DEBUG Processing 102/848 atomic regions from SNP 30303 to 30903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,330 DEBUG Processing 32/468 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,369 DEBUG Processing 126/885 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,422 DEBUG Processing 103/848 atomic regions from SNP 30603 to 31203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,424 DEBUG Processing 165/214 atomic regions from SNP 49393 to 49994 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,560 DEBUG Processing 33/468 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,614 DEBUG Processing 127/885 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,660 DEBUG Processing 104/848 atomic regions from SNP 30903 to 31503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,689 DEBUG Processing 166/214 atomic regions from SNP 49694 to 50295 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,791 DEBUG Processing 34/468 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,859 DEBUG Processing 128/885 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,893 DEBUG Processing 105/848 atomic regions from SNP 31203 to 31803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,956 DEBUG Processing 167/214 atomic regions from SNP 49995 to 50596 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,029 DEBUG Processing 35/468 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,123 DEBUG Processing 129/885 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,161 DEBUG Processing 106/848 atomic regions from SNP 31503 to 32103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,248 DEBUG Processing 168/214 atomic regions from SNP 50296 to 50897 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,290 DEBUG Processing 36/468 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,378 DEBUG Processing 130/885 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,416 DEBUG Processing 107/848 atomic regions from SNP 31803 to 32403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,506 DEBUG Processing 169/214 atomic regions from SNP 50597 to 51198 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,569 DEBUG Processing 37/468 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,667 DEBUG Processing 131/885 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,703 DEBUG Processing 108/848 atomic regions from SNP 32103 to 32703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,782 DEBUG Processing 170/214 atomic regions from SNP 50898 to 51499 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,840 DEBUG Processing 38/468 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,939 DEBUG Processing 132/885 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,971 DEBUG Processing 109/848 atomic regions from SNP 32403 to 33003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,023 DEBUG Processing 171/214 atomic regions from SNP 51199 to 51800 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,084 DEBUG Processing 39/468 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,195 DEBUG Processing 133/885 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,220 DEBUG Processing 110/848 atomic regions from SNP 32703 to 33303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,284 DEBUG Processing 172/214 atomic regions from SNP 51500 to 52101 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,346 DEBUG Processing 40/468 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,454 DEBUG Processing 134/885 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,502 DEBUG Processing 111/848 atomic regions from SNP 33003 to 33603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,555 DEBUG Processing 173/214 atomic regions from SNP 51801 to 52402 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,596 DEBUG Processing 41/468 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,697 DEBUG Processing 135/885 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,771 DEBUG Processing 112/848 atomic regions from SNP 33303 to 33903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,793 DEBUG Processing 174/214 atomic regions from SNP 52102 to 52703 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,833 DEBUG Processing 42/468 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,938 DEBUG Processing 136/885 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,026 DEBUG Processing 175/214 atomic regions from SNP 52403 to 53004 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,042 DEBUG Processing 113/848 atomic regions from SNP 33603 to 34203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,062 DEBUG Processing 43/468 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,175 DEBUG Processing 137/885 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,275 DEBUG Processing 176/214 atomic regions from SNP 52704 to 53305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,306 DEBUG Processing 44/468 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,309 DEBUG Processing 114/848 atomic regions from SNP 33903 to 34503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,415 DEBUG Processing 138/885 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,530 DEBUG Processing 177/214 atomic regions from SNP 53005 to 53606 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,535 DEBUG Processing 45/468 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,575 DEBUG Processing 115/848 atomic regions from SNP 34203 to 34803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,653 DEBUG Processing 139/885 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,766 DEBUG Processing 46/468 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,772 DEBUG Processing 178/214 atomic regions from SNP 53306 to 53907 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,839 DEBUG Processing 116/848 atomic regions from SNP 34503 to 35103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,910 DEBUG Processing 140/885 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,997 DEBUG Processing 47/468 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,009 DEBUG Processing 179/214 atomic regions from SNP 53607 to 54208 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,070 DEBUG Processing 117/848 atomic regions from SNP 34803 to 35403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,170 DEBUG Processing 141/885 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,186 DEBUG Segmenting atomic regions: 2025-01-31 09:44:39,230 DEBUG Processing 48/468 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,245 DEBUG Processing 180/214 atomic regions from SNP 53908 to 54509 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,310 DEBUG Processing 118/848 atomic regions from SNP 35103 to 35703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,326 DEBUG Processing 1/1013 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,413 DEBUG Processing 142/885 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,468 DEBUG Processing 49/468 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,491 DEBUG Processing 181/214 atomic regions from SNP 54209 to 54810 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,575 DEBUG Processing 119/848 atomic regions from SNP 35403 to 36003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,656 DEBUG Processing 143/885 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,706 DEBUG Processing 50/468 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,733 DEBUG Processing 182/214 atomic regions from SNP 54510 to 55111 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,803 DEBUG Processing 120/848 atomic regions from SNP 35703 to 36303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,881 DEBUG Segmenting atomic regions: 2025-01-31 09:44:39,897 DEBUG Processing 144/885 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,942 DEBUG Processing 51/468 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,979 DEBUG Processing 183/214 atomic regions from SNP 54811 to 55412 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,029 DEBUG Processing 1/1125 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,035 DEBUG Processing 121/848 atomic regions from SNP 36003 to 36603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,139 DEBUG Processing 145/885 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,178 DEBUG Processing 2/1013 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,182 DEBUG Processing 52/468 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,225 DEBUG Processing 184/214 atomic regions from SNP 55112 to 55713 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,273 DEBUG Processing 122/848 atomic regions from SNP 36303 to 36903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,386 DEBUG Processing 146/885 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,432 DEBUG Processing 53/468 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,479 DEBUG Processing 3/1013 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,480 DEBUG Processing 185/214 atomic regions from SNP 55413 to 56014 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,504 DEBUG Processing 123/848 atomic regions from SNP 36603 to 37203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,621 DEBUG Processing 147/885 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,686 DEBUG Processing 54/468 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,738 DEBUG Processing 186/214 atomic regions from SNP 55714 to 56315 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,749 DEBUG Processing 124/848 atomic regions from SNP 36903 to 37503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,767 DEBUG Processing 4/1013 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,856 DEBUG Processing 148/885 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,864 DEBUG Processing 2/1125 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,925 DEBUG Processing 55/468 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,989 DEBUG Processing 125/848 atomic regions from SNP 37203 to 37803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,990 DEBUG Processing 187/214 atomic regions from SNP 56015 to 56616 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,048 DEBUG Processing 5/1013 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,099 DEBUG Processing 149/885 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,138 DEBUG Processing 3/1125 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,151 DEBUG Processing 56/468 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,225 DEBUG Processing 126/848 atomic regions from SNP 37503 to 38103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,254 DEBUG Processing 188/214 atomic regions from SNP 56316 to 56917 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,336 DEBUG Processing 6/1013 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,351 DEBUG Processing 150/885 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,378 DEBUG Processing 57/468 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,410 DEBUG Processing 4/1125 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,451 DEBUG Processing 127/848 atomic regions from SNP 37803 to 38403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,495 DEBUG Processing 189/214 atomic regions from SNP 56617 to 57218 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,618 DEBUG Processing 58/468 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,618 DEBUG Processing 7/1013 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,622 DEBUG Processing 151/885 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,682 DEBUG Processing 128/848 atomic regions from SNP 38103 to 38703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,682 DEBUG Processing 5/1125 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,728 DEBUG Processing 190/214 atomic regions from SNP 56918 to 57519 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,870 DEBUG Processing 59/468 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,871 DEBUG Processing 152/885 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,904 DEBUG Processing 8/1013 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,923 DEBUG Processing 129/848 atomic regions from SNP 38403 to 39003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,964 DEBUG Processing 6/1125 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,965 DEBUG Processing 191/214 atomic regions from SNP 57219 to 57820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,113 DEBUG Processing 60/468 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,127 DEBUG Processing 153/885 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,170 DEBUG Processing 130/848 atomic regions from SNP 38703 to 39303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,186 DEBUG Processing 9/1013 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,207 DEBUG Processing 192/214 atomic regions from SNP 57520 to 58121 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,245 DEBUG Processing 7/1125 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,345 DEBUG Processing 61/468 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,395 DEBUG Processing 154/885 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,419 DEBUG Processing 131/848 atomic regions from SNP 39003 to 39603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,455 DEBUG Processing 193/214 atomic regions from SNP 57821 to 58422 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,475 DEBUG Processing 10/1013 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,524 DEBUG Processing 8/1125 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,567 DEBUG Processing 62/468 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,643 DEBUG Processing 155/885 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,657 DEBUG Processing 132/848 atomic regions from SNP 39303 to 39903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,704 DEBUG Processing 194/214 atomic regions from SNP 58122 to 58723 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,758 DEBUG Processing 11/1013 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,794 DEBUG Processing 9/1125 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,798 DEBUG Processing 63/468 atomic regions from SNP 18662 to 19262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,883 DEBUG Processing 156/885 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,915 DEBUG Processing 133/848 atomic regions from SNP 39603 to 40203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,954 DEBUG Processing 195/214 atomic regions from SNP 58423 to 59024 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,043 DEBUG Processing 64/468 atomic regions from SNP 18962 to 19562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,057 DEBUG Processing 12/1013 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,066 DEBUG Processing 10/1125 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,126 DEBUG Processing 157/885 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,164 DEBUG Processing 134/848 atomic regions from SNP 39903 to 40503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,195 DEBUG Processing 196/214 atomic regions from SNP 58724 to 59325 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,284 DEBUG Processing 65/468 atomic regions from SNP 19262 to 19862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,331 DEBUG Processing 13/1013 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,364 DEBUG Processing 11/1125 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,372 DEBUG Processing 158/885 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,415 DEBUG Processing 135/848 atomic regions from SNP 40203 to 40803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,439 DEBUG Processing 197/214 atomic regions from SNP 59025 to 59626 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,517 DEBUG Processing 66/468 atomic regions from SNP 19562 to 20162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,600 DEBUG Processing 14/1013 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,619 DEBUG Processing 159/885 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,639 DEBUG Processing 12/1125 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,659 DEBUG Processing 136/848 atomic regions from SNP 40503 to 41103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,688 DEBUG Processing 198/214 atomic regions from SNP 59326 to 59927 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,750 DEBUG Processing 67/468 atomic regions from SNP 19862 to 20462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,871 DEBUG Processing 15/1013 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,873 DEBUG Processing 160/885 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,934 DEBUG Processing 137/848 atomic regions from SNP 40803 to 41403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,940 DEBUG Processing 13/1125 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,988 DEBUG Processing 199/214 atomic regions from SNP 59627 to 60228 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,019 DEBUG Processing 68/468 atomic regions from SNP 20162 to 20762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,102 DEBUG Processing 161/885 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,133 DEBUG Processing 16/1013 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,162 DEBUG Processing 138/848 atomic regions from SNP 41103 to 41703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,205 DEBUG Processing 14/1125 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,226 DEBUG Processing 200/214 atomic regions from SNP 59928 to 60529 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,267 DEBUG Processing 69/468 atomic regions from SNP 20462 to 21062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,346 DEBUG Processing 162/885 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,387 DEBUG Processing 139/848 atomic regions from SNP 41403 to 42003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,402 DEBUG Processing 17/1013 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,458 DEBUG Processing 201/214 atomic regions from SNP 60229 to 60830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,466 DEBUG Processing 15/1125 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,521 DEBUG Processing 70/468 atomic regions from SNP 20762 to 21362 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,599 DEBUG Processing 163/885 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,614 DEBUG Processing 140/848 atomic regions from SNP 41703 to 42303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,673 DEBUG Processing 18/1013 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,688 DEBUG Processing 202/214 atomic regions from SNP 60530 to 61131 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,733 DEBUG Processing 16/1125 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,782 DEBUG Processing 71/468 atomic regions from SNP 21062 to 21662 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,845 DEBUG Processing 164/885 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,856 DEBUG Processing 141/848 atomic regions from SNP 42003 to 42603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,920 DEBUG Processing 203/214 atomic regions from SNP 60831 to 61432 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,956 DEBUG Processing 19/1013 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,998 DEBUG Processing 17/1125 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,047 DEBUG Processing 72/468 atomic regions from SNP 21362 to 21962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,088 DEBUG Processing 165/885 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,097 DEBUG Processing 142/848 atomic regions from SNP 42303 to 42903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,153 DEBUG Processing 204/214 atomic regions from SNP 61132 to 61733 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,244 DEBUG Processing 20/1013 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,270 DEBUG Processing 18/1125 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,298 DEBUG Processing 73/468 atomic regions from SNP 21662 to 22262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,332 DEBUG Processing 166/885 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,336 DEBUG Processing 143/848 atomic regions from SNP 42603 to 43203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,386 DEBUG Processing 205/214 atomic regions from SNP 61433 to 62034 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,536 DEBUG Processing 21/1013 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,538 DEBUG Processing 74/468 atomic regions from SNP 21962 to 22562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,543 DEBUG Processing 19/1125 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,577 DEBUG Processing 144/848 atomic regions from SNP 42903 to 43503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,578 DEBUG Processing 167/885 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,644 DEBUG Processing 206/214 atomic regions from SNP 61734 to 62335 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,772 DEBUG Processing 75/468 atomic regions from SNP 22262 to 22862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,813 DEBUG Processing 145/848 atomic regions from SNP 43203 to 43803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,816 DEBUG Processing 20/1125 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,819 DEBUG Processing 168/885 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,819 DEBUG Processing 22/1013 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,913 DEBUG Processing 207/214 atomic regions from SNP 62035 to 62636 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,996 DEBUG Processing 76/468 atomic regions from SNP 22562 to 23162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,059 DEBUG Processing 169/885 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,068 DEBUG Processing 146/848 atomic regions from SNP 43503 to 44103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,083 DEBUG Processing 23/1013 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,088 DEBUG Processing 21/1125 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,157 DEBUG Processing 208/214 atomic regions from SNP 62336 to 62937 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,224 DEBUG Processing 77/468 atomic regions from SNP 22862 to 23462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,316 DEBUG Processing 170/885 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,332 DEBUG Processing 147/848 atomic regions from SNP 43803 to 44403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,347 DEBUG Processing 24/1013 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,361 DEBUG Processing 22/1125 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,420 DEBUG Processing 209/214 atomic regions from SNP 62637 to 63238 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,459 DEBUG Processing 78/468 atomic regions from SNP 23162 to 23762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,572 DEBUG Processing 171/885 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,606 DEBUG Processing 148/848 atomic regions from SNP 44103 to 44703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,616 DEBUG Processing 25/1013 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,636 DEBUG Processing 23/1125 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,693 DEBUG Processing 79/468 atomic regions from SNP 23462 to 24062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,701 DEBUG Processing 210/214 atomic regions from SNP 62938 to 63539 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,824 DEBUG Processing 172/885 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,874 DEBUG Processing 149/848 atomic regions from SNP 44403 to 45003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,893 DEBUG Processing 26/1013 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,915 DEBUG Processing 24/1125 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,925 DEBUG Processing 80/468 atomic regions from SNP 23762 to 24362 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,978 DEBUG Processing 211/214 atomic regions from SNP 63239 to 63840 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,067 DEBUG Processing 173/885 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,173 DEBUG Processing 150/848 atomic regions from SNP 44703 to 45303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,185 DEBUG Processing 81/468 atomic regions from SNP 24062 to 24662 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,190 DEBUG Processing 27/1013 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,218 DEBUG Processing 25/1125 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,255 DEBUG Processing 212/214 atomic regions from SNP 63540 to 64141 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,327 DEBUG Processing 174/885 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,471 DEBUG Processing 82/468 atomic regions from SNP 24362 to 24962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,487 DEBUG Processing 151/848 atomic regions from SNP 45003 to 45603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,510 DEBUG Processing 28/1013 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,536 DEBUG Processing 26/1125 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,559 DEBUG Processing 213/214 atomic regions from SNP 63841 to 64442 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,610 DEBUG Processing 175/885 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,782 DEBUG Processing 83/468 atomic regions from SNP 24662 to 25262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,817 DEBUG Processing 152/848 atomic regions from SNP 45303 to 45903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,861 DEBUG Processing 29/1013 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,902 DEBUG Processing 27/1125 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,913 DEBUG Processing 214/214 atomic regions from SNP 64142 to 64743 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,923 DEBUG Processing 176/885 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,067 DEBUG Processing 84/468 atomic regions from SNP 24962 to 25562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,079 DEBUG Processing 153/848 atomic regions from SNP 45603 to 46203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,112 DEBUG Unique SNPs positions in subchromosome 1: 64744 2025-01-31 09:44:48,175 DEBUG Processing 30/1013 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,209 DEBUG Processing 177/885 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,218 DEBUG Processing 28/1125 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,309 DEBUG Processing 85/468 atomic regions from SNP 25262 to 25862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,312 DEBUG Processing 154/848 atomic regions from SNP 45903 to 46503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,434 DEBUG Subchromosome time: 63.00653364136815, subchromosome SNPs: 64744 2025-01-31 09:44:48,455 DEBUG Processing 31/1013 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,472 DEBUG Processing 178/885 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,485 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:48,512 DEBUG Processing 29/1125 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,548 DEBUG Processing 155/848 atomic regions from SNP 46203 to 46803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,559 DEBUG Processing 86/468 atomic regions from SNP 25562 to 26162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,717 DEBUG Processing 32/1013 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,723 DEBUG Processing 179/885 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,799 DEBUG Processing 156/848 atomic regions from SNP 46503 to 47103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,801 DEBUG Processing 30/1125 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,828 DEBUG Processing 87/468 atomic regions from SNP 25862 to 26462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,982 DEBUG Processing 180/885 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,996 DEBUG Processing 33/1013 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,065 DEBUG Processing 157/848 atomic regions from SNP 46803 to 47403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,068 DEBUG Processing 88/468 atomic regions from SNP 26162 to 26762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,080 DEBUG Processing 31/1125 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,264 DEBUG Processing 181/885 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,292 DEBUG Processing 34/1013 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,316 DEBUG Processing 89/468 atomic regions from SNP 26462 to 27062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,334 DEBUG Processing 158/848 atomic regions from SNP 47103 to 47703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,375 DEBUG Processing 32/1125 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,619 DEBUG Processing 90/468 atomic regions from SNP 26762 to 27362 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,631 DEBUG Processing 182/885 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,642 DEBUG Processing 159/848 atomic regions from SNP 47403 to 48003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,647 DEBUG Processing 35/1013 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,704 DEBUG Processing 33/1125 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,924 DEBUG Processing 91/468 atomic regions from SNP 27062 to 27662 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,957 DEBUG Processing 160/848 atomic regions from SNP 47703 to 48303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,984 DEBUG Processing 183/885 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,009 DEBUG Processing 36/1013 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,078 DEBUG Processing 34/1125 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,211 DEBUG Processing 92/468 atomic regions from SNP 27362 to 27962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,265 DEBUG Processing 161/848 atomic regions from SNP 48003 to 48603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,299 DEBUG Processing 184/885 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,368 DEBUG Processing 37/1013 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,468 DEBUG Processing 35/1125 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,558 DEBUG Processing 93/468 atomic regions from SNP 27662 to 28262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,586 DEBUG Processing 162/848 atomic regions from SNP 48303 to 48903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,600 DEBUG Processing 185/885 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,671 DEBUG Processing 38/1013 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,896 DEBUG Processing 36/1125 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,934 DEBUG Processing 94/468 atomic regions from SNP 27962 to 28562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,969 DEBUG Processing 186/885 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,984 DEBUG Processing 163/848 atomic regions from SNP 48603 to 49203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,020 DEBUG Processing 39/1013 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,221 DEBUG Processing 37/1125 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,259 DEBUG Processing 95/468 atomic regions from SNP 28262 to 28862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,302 DEBUG Processing 187/885 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,321 DEBUG Processing 164/848 atomic regions from SNP 48903 to 49503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,355 DEBUG Processing 40/1013 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,506 DEBUG Processing 96/468 atomic regions from SNP 28562 to 29162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,542 DEBUG Processing 38/1125 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,596 DEBUG Processing 188/885 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,667 DEBUG Processing 165/848 atomic regions from SNP 49203 to 49803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,693 DEBUG Processing 41/1013 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,772 DEBUG Processing 97/468 atomic regions from SNP 28862 to 29462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,842 DEBUG Processing 189/885 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,865 DEBUG Processing 39/1125 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,955 DEBUG Processing 166/848 atomic regions from SNP 49503 to 50103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,999 DEBUG Processing 42/1013 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,083 DEBUG Processing 98/468 atomic regions from SNP 29162 to 29762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,157 DEBUG Processing 190/885 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,226 DEBUG Processing 40/1125 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,247 DEBUG Processing 167/848 atomic regions from SNP 49803 to 50403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,270 DEBUG Processing 43/1013 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,319 DEBUG Processing 99/468 atomic regions from SNP 29462 to 30062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,414 DEBUG Processing 191/885 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,513 DEBUG Processing 41/1125 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,526 DEBUG Processing 168/848 atomic regions from SNP 50103 to 50703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,557 DEBUG Processing 44/1013 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,566 DEBUG Processing 100/468 atomic regions from SNP 29762 to 30362 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,683 DEBUG Processing 192/885 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,844 DEBUG Processing 169/848 atomic regions from SNP 50403 to 51003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,860 DEBUG Processing 101/468 atomic regions from SNP 30062 to 30662 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,869 DEBUG Processing 42/1125 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,890 DEBUG Processing 45/1013 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,003 DEBUG Processing 193/885 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,190 DEBUG Processing 102/468 atomic regions from SNP 30362 to 30962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,220 DEBUG Processing 170/848 atomic regions from SNP 50703 to 51303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,251 DEBUG Processing 46/1013 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,259 DEBUG Processing 43/1125 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,340 DEBUG Processing 194/885 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,559 DEBUG Processing 103/468 atomic regions from SNP 30662 to 31262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,598 DEBUG Processing 171/848 atomic regions from SNP 51003 to 51603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,645 DEBUG Processing 47/1013 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,664 DEBUG Processing 44/1125 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,701 DEBUG Processing 195/885 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,837 DEBUG Processing 104/468 atomic regions from SNP 30962 to 31562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,901 DEBUG Processing 172/848 atomic regions from SNP 51303 to 51903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,924 DEBUG Processing 48/1013 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,951 DEBUG Processing 196/885 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,958 DEBUG Processing 45/1125 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,172 DEBUG Processing 105/468 atomic regions from SNP 31262 to 31862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,297 DEBUG Processing 173/848 atomic regions from SNP 51603 to 52203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,303 DEBUG Processing 197/885 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,327 DEBUG Processing 49/1013 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,342 DEBUG Processing 46/1125 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,466 DEBUG Processing 106/468 atomic regions from SNP 31562 to 32162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,683 DEBUG Processing 174/848 atomic regions from SNP 51903 to 52503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,683 DEBUG Processing 198/885 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,748 DEBUG Processing 50/1013 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,748 DEBUG Processing 107/468 atomic regions from SNP 31862 to 32462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,757 DEBUG Processing 47/1125 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,936 DEBUG Processing 199/885 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,962 DEBUG Processing 175/848 atomic regions from SNP 52203 to 52803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,001 DEBUG Processing 108/468 atomic regions from SNP 32162 to 32762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,044 DEBUG Processing 51/1013 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,053 DEBUG Processing 48/1125 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,181 DEBUG Processing 200/885 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,233 DEBUG Processing 176/848 atomic regions from SNP 52503 to 53103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,251 DEBUG Processing 109/468 atomic regions from SNP 32462 to 33062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,322 DEBUG Processing 52/1013 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,336 DEBUG Processing 49/1125 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,422 DEBUG Processing 201/885 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,491 DEBUG Processing 177/848 atomic regions from SNP 52803 to 53403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,507 DEBUG Processing 110/468 atomic regions from SNP 32762 to 33362 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,587 DEBUG Processing 53/1013 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,623 DEBUG Processing 50/1125 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,673 DEBUG Processing 202/885 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,751 DEBUG Processing 178/848 atomic regions from SNP 53103 to 53703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,755 DEBUG Processing 111/468 atomic regions from SNP 33062 to 33662 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,846 DEBUG Processing 54/1013 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,901 DEBUG Processing 51/1125 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,927 DEBUG Processing 203/885 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,997 DEBUG Processing 112/468 atomic regions from SNP 33362 to 33962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,009 DEBUG Processing 179/848 atomic regions from SNP 53403 to 54003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,103 DEBUG Processing 55/1013 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,173 DEBUG Processing 52/1125 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,174 DEBUG Processing 204/885 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,248 DEBUG Processing 113/468 atomic regions from SNP 33662 to 34262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,259 DEBUG Processing 180/848 atomic regions from SNP 53703 to 54303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,362 DEBUG Processing 56/1013 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,418 DEBUG Processing 205/885 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,442 DEBUG Processing 53/1125 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,495 DEBUG Processing 114/468 atomic regions from SNP 33962 to 34562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,506 DEBUG Processing 181/848 atomic regions from SNP 54003 to 54603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,624 DEBUG Processing 57/1013 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,657 DEBUG Processing 206/885 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,706 DEBUG Processing 54/1125 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,736 DEBUG Processing 115/468 atomic regions from SNP 34262 to 34862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,752 DEBUG Processing 182/848 atomic regions from SNP 54303 to 54903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,890 DEBUG Processing 58/1013 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,907 DEBUG Processing 207/885 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,968 DEBUG Processing 116/468 atomic regions from SNP 34562 to 35162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,984 DEBUG Processing 55/1125 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,990 DEBUG Processing 183/848 atomic regions from SNP 54603 to 55203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,158 DEBUG Processing 59/1013 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,160 DEBUG Processing 208/885 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,202 DEBUG Processing 117/468 atomic regions from SNP 34862 to 35462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,265 DEBUG Processing 184/848 atomic regions from SNP 54903 to 55503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,271 DEBUG Processing 56/1125 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,409 DEBUG Processing 209/885 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,425 DEBUG Processing 60/1013 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,434 DEBUG Processing 118/468 atomic regions from SNP 35162 to 35762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,550 DEBUG Processing 185/848 atomic regions from SNP 55203 to 55803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,559 DEBUG Processing 57/1125 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,655 DEBUG Processing 210/885 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,667 DEBUG Processing 119/468 atomic regions from SNP 35462 to 36062 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,690 DEBUG Processing 61/1013 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,837 DEBUG Processing 186/848 atomic regions from SNP 55503 to 56103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,873 DEBUG Processing 58/1125 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,891 DEBUG Processing 120/468 atomic regions from SNP 35762 to 36362 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,901 DEBUG Processing 211/885 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,955 DEBUG Processing 62/1013 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,104 DEBUG Processing 187/848 atomic regions from SNP 55803 to 56403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,124 DEBUG Processing 121/468 atomic regions from SNP 36062 to 36662 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,154 DEBUG Processing 212/885 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,193 DEBUG Processing 59/1125 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,221 DEBUG Processing 63/1013 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,353 DEBUG Processing 188/848 atomic regions from SNP 56103 to 56703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,360 DEBUG Processing 122/468 atomic regions from SNP 36362 to 36962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,408 DEBUG Processing 213/885 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,496 DEBUG Processing 60/1125 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,499 DEBUG Processing 64/1013 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,599 DEBUG Processing 123/468 atomic regions from SNP 36662 to 37262 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,607 DEBUG Processing 189/848 atomic regions from SNP 56403 to 57003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,664 DEBUG Processing 214/885 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,767 DEBUG Processing 65/1013 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,768 DEBUG Processing 61/1125 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,831 DEBUG Processing 124/468 atomic regions from SNP 36962 to 37562 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,854 DEBUG Processing 190/848 atomic regions from SNP 56703 to 57303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,917 DEBUG Processing 215/885 atomic regions from SNP 64414 to 65015 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,048 DEBUG Processing 62/1125 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,057 DEBUG Processing 66/1013 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,058 DEBUG Processing 125/468 atomic regions from SNP 37262 to 37862 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,103 DEBUG Processing 191/848 atomic regions from SNP 57003 to 57603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,169 DEBUG Processing 216/885 atomic regions from SNP 64715 to 65316 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,286 DEBUG Processing 126/468 atomic regions from SNP 37562 to 38162 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,319 DEBUG Processing 67/1013 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,334 DEBUG Processing 63/1125 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,354 DEBUG Processing 192/848 atomic regions from SNP 57303 to 57903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,429 DEBUG Processing 217/885 atomic regions from SNP 65016 to 65617 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,519 DEBUG Processing 127/468 atomic regions from SNP 37862 to 38462 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,596 DEBUG Processing 68/1013 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,611 DEBUG Processing 193/848 atomic regions from SNP 57603 to 58203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,628 DEBUG Processing 64/1125 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,678 DEBUG Processing 218/885 atomic regions from SNP 65317 to 65918 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,755 DEBUG Processing 128/468 atomic regions from SNP 38162 to 38762 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,863 DEBUG Processing 69/1013 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,868 DEBUG Processing 194/848 atomic regions from SNP 57903 to 58503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,922 DEBUG Processing 65/1125 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,930 DEBUG Processing 219/885 atomic regions from SNP 65618 to 66219 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,994 DEBUG Processing 129/468 atomic regions from SNP 38462 to 39062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,124 DEBUG Processing 195/848 atomic regions from SNP 58203 to 58803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,130 DEBUG Processing 70/1013 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,185 DEBUG Processing 220/885 atomic regions from SNP 65919 to 66520 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,208 DEBUG Processing 66/1125 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,226 DEBUG Processing 130/468 atomic regions from SNP 38762 to 39362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,386 DEBUG Processing 196/848 atomic regions from SNP 58503 to 59103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,403 DEBUG Processing 71/1013 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,447 DEBUG Processing 221/885 atomic regions from SNP 66220 to 66821 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,459 DEBUG Processing 131/468 atomic regions from SNP 39062 to 39662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,495 DEBUG Processing 67/1125 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,652 DEBUG Processing 197/848 atomic regions from SNP 58803 to 59403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,674 DEBUG Processing 72/1013 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,693 DEBUG Processing 132/468 atomic regions from SNP 39362 to 39962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,704 DEBUG Processing 222/885 atomic regions from SNP 66521 to 67122 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,782 DEBUG Processing 68/1125 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,898 DEBUG Processing 198/848 atomic regions from SNP 59103 to 59703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,931 DEBUG Processing 133/468 atomic regions from SNP 39662 to 40262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,945 DEBUG Processing 73/1013 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,955 DEBUG Processing 223/885 atomic regions from SNP 66822 to 67423 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,084 DEBUG Processing 69/1125 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,153 DEBUG Processing 199/848 atomic regions from SNP 59403 to 60003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,173 DEBUG Processing 134/468 atomic regions from SNP 39962 to 40562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,207 DEBUG Processing 224/885 atomic regions from SNP 67123 to 67724 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,216 DEBUG Processing 74/1013 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,375 DEBUG Processing 70/1125 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,409 DEBUG Processing 200/848 atomic regions from SNP 59703 to 60303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,415 DEBUG Processing 135/468 atomic regions from SNP 40262 to 40862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,463 DEBUG Processing 225/885 atomic regions from SNP 67424 to 68025 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,485 DEBUG Processing 75/1013 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,663 DEBUG Processing 136/468 atomic regions from SNP 40562 to 41162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,664 DEBUG Processing 71/1125 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,670 DEBUG Processing 201/848 atomic regions from SNP 60003 to 60603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,724 DEBUG Processing 226/885 atomic regions from SNP 67725 to 68326 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,751 DEBUG Processing 76/1013 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,908 DEBUG Processing 137/468 atomic regions from SNP 40862 to 41462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,926 DEBUG Processing 202/848 atomic regions from SNP 60303 to 60903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,955 DEBUG Processing 72/1125 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,992 DEBUG Processing 227/885 atomic regions from SNP 68026 to 68627 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,027 DEBUG Processing 77/1013 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,143 DEBUG Processing 138/468 atomic regions from SNP 41162 to 41762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,173 DEBUG Processing 203/848 atomic regions from SNP 60603 to 61203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,247 DEBUG Processing 73/1125 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,259 DEBUG Processing 228/885 atomic regions from SNP 68327 to 68928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,297 DEBUG Processing 78/1013 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,371 DEBUG Processing 139/468 atomic regions from SNP 41462 to 42062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,416 DEBUG Processing 204/848 atomic regions from SNP 60903 to 61503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,523 DEBUG Processing 229/885 atomic regions from SNP 68628 to 69229 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,539 DEBUG Processing 74/1125 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,565 DEBUG Processing 79/1013 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,601 DEBUG Processing 140/468 atomic regions from SNP 41762 to 42362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,661 DEBUG Processing 205/848 atomic regions from SNP 61203 to 61803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,779 DEBUG Processing 230/885 atomic regions from SNP 68929 to 69530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,825 DEBUG Processing 75/1125 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,839 DEBUG Processing 141/468 atomic regions from SNP 42062 to 42662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,843 DEBUG Processing 80/1013 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,915 DEBUG Processing 206/848 atomic regions from SNP 61503 to 62103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,065 DEBUG Processing 231/885 atomic regions from SNP 69230 to 69831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,141 DEBUG Processing 142/468 atomic regions from SNP 42362 to 42962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,171 DEBUG Processing 76/1125 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,186 DEBUG Processing 81/1013 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,193 DEBUG Processing 207/848 atomic regions from SNP 61803 to 62403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,352 DEBUG Processing 232/885 atomic regions from SNP 69531 to 70132 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,454 DEBUG Processing 143/468 atomic regions from SNP 42662 to 43262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,528 DEBUG Processing 208/848 atomic regions from SNP 62103 to 62703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,548 DEBUG Processing 82/1013 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,556 DEBUG Processing 77/1125 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,718 DEBUG Processing 233/885 atomic regions from SNP 69832 to 70433 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,751 DEBUG Processing 144/468 atomic regions from SNP 42962 to 43562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,883 DEBUG Processing 209/848 atomic regions from SNP 62403 to 63003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,899 DEBUG Processing 83/1013 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,920 DEBUG Processing 78/1125 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,129 DEBUG Processing 234/885 atomic regions from SNP 70133 to 70734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,135 DEBUG Processing 145/468 atomic regions from SNP 43262 to 43862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,227 DEBUG Processing 210/848 atomic regions from SNP 62703 to 63303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,300 DEBUG Processing 84/1013 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,346 DEBUG Processing 79/1125 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,489 DEBUG Processing 235/885 atomic regions from SNP 70434 to 71035 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,530 DEBUG Processing 146/468 atomic regions from SNP 43562 to 44162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,621 DEBUG Processing 211/848 atomic regions from SNP 63003 to 63603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,715 DEBUG Processing 85/1013 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,762 DEBUG Processing 80/1125 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,823 DEBUG Processing 236/885 atomic regions from SNP 70735 to 71336 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,847 DEBUG Processing 147/468 atomic regions from SNP 43862 to 44462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,019 DEBUG Processing 212/848 atomic regions from SNP 63303 to 63903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,128 DEBUG Processing 86/1013 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,189 DEBUG Processing 237/885 atomic regions from SNP 71036 to 71637 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,189 DEBUG Processing 148/468 atomic regions from SNP 44162 to 44762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,199 DEBUG Processing 81/1125 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,332 DEBUG Processing 213/848 atomic regions from SNP 63603 to 64203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,444 DEBUG Processing 87/1013 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,459 DEBUG Processing 149/468 atomic regions from SNP 44462 to 45062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,468 DEBUG Processing 238/885 atomic regions from SNP 71337 to 71938 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,513 DEBUG Processing 82/1125 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,589 DEBUG Processing 214/848 atomic regions from SNP 63903 to 64503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,705 DEBUG Processing 150/468 atomic regions from SNP 44762 to 45362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,735 DEBUG Processing 239/885 atomic regions from SNP 71638 to 72239 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,755 DEBUG Processing 88/1013 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,815 DEBUG Processing 83/1125 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,893 DEBUG Processing 215/848 atomic regions from SNP 64203 to 64803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,972 DEBUG Processing 151/468 atomic regions from SNP 45062 to 45662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,026 DEBUG Processing 240/885 atomic regions from SNP 71939 to 72540 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,076 DEBUG Processing 89/1013 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,118 DEBUG Processing 84/1125 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,209 DEBUG Processing 216/848 atomic regions from SNP 64503 to 65103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,255 DEBUG Processing 152/468 atomic regions from SNP 45362 to 45962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,364 DEBUG Processing 241/885 atomic regions from SNP 72240 to 72841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,433 DEBUG Processing 90/1013 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,470 DEBUG Processing 85/1125 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,539 DEBUG Processing 217/848 atomic regions from SNP 64803 to 65403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,556 DEBUG Processing 153/468 atomic regions from SNP 45662 to 46262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,684 DEBUG Processing 242/885 atomic regions from SNP 72541 to 73142 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,786 DEBUG Processing 91/1013 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,834 DEBUG Processing 86/1125 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,868 DEBUG Processing 154/468 atomic regions from SNP 45962 to 46562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,879 DEBUG Processing 218/848 atomic regions from SNP 65103 to 65703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,967 DEBUG Processing 243/885 atomic regions from SNP 72842 to 73443 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,152 DEBUG Processing 92/1013 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,231 DEBUG Processing 87/1125 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,239 DEBUG Processing 155/468 atomic regions from SNP 46262 to 46862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,249 DEBUG Processing 219/848 atomic regions from SNP 65403 to 66003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,316 DEBUG Processing 244/885 atomic regions from SNP 73143 to 73744 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,479 DEBUG Processing 93/1013 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,599 DEBUG Processing 156/468 atomic regions from SNP 46562 to 47162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,637 DEBUG Processing 88/1125 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,655 DEBUG Processing 220/848 atomic regions from SNP 65703 to 66303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,702 DEBUG Processing 245/885 atomic regions from SNP 73444 to 74045 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,799 DEBUG Processing 94/1013 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,830 DEBUG Processing 157/468 atomic regions from SNP 46862 to 47462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,905 DEBUG Processing 89/1125 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,907 DEBUG Processing 221/848 atomic regions from SNP 66003 to 66603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,981 DEBUG Processing 246/885 atomic regions from SNP 73745 to 74346 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,063 DEBUG Processing 158/468 atomic regions from SNP 47162 to 47762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,075 DEBUG Processing 95/1013 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,134 DEBUG Processing 222/848 atomic regions from SNP 66303 to 66903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,168 DEBUG Processing 90/1125 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,224 DEBUG Processing 247/885 atomic regions from SNP 74046 to 74647 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,299 DEBUG Processing 159/468 atomic regions from SNP 47462 to 48062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,346 DEBUG Processing 96/1013 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,386 DEBUG Processing 223/848 atomic regions from SNP 66603 to 67203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,435 DEBUG Processing 91/1125 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,458 DEBUG Processing 248/885 atomic regions from SNP 74347 to 74948 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,540 DEBUG Processing 160/468 atomic regions from SNP 47762 to 48362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,626 DEBUG Processing 97/1013 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,631 DEBUG Processing 224/848 atomic regions from SNP 66903 to 67503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,694 DEBUG Processing 249/885 atomic regions from SNP 74648 to 75249 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,708 DEBUG Processing 92/1125 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,768 DEBUG Processing 161/468 atomic regions from SNP 48062 to 48662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,892 DEBUG Processing 225/848 atomic regions from SNP 67203 to 67803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,918 DEBUG Processing 98/1013 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,954 DEBUG Processing 250/885 atomic regions from SNP 74949 to 75550 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,998 DEBUG Processing 162/468 atomic regions from SNP 48362 to 48962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,005 DEBUG Processing 93/1125 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,142 DEBUG Processing 226/848 atomic regions from SNP 67503 to 68103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,199 DEBUG Processing 99/1013 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,219 DEBUG Processing 251/885 atomic regions from SNP 75250 to 75851 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,237 DEBUG Processing 163/468 atomic regions from SNP 48662 to 49262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,290 DEBUG Processing 94/1125 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,380 DEBUG Processing 227/848 atomic regions from SNP 67803 to 68403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,474 DEBUG Processing 100/1013 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,480 DEBUG Processing 252/885 atomic regions from SNP 75551 to 76152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,484 DEBUG Processing 164/468 atomic regions from SNP 48962 to 49562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,578 DEBUG Processing 95/1125 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,627 DEBUG Processing 228/848 atomic regions from SNP 68103 to 68703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,720 DEBUG Processing 165/468 atomic regions from SNP 49262 to 49862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,734 DEBUG Processing 253/885 atomic regions from SNP 75852 to 76453 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,747 DEBUG Processing 101/1013 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,867 DEBUG Processing 96/1125 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,881 DEBUG Processing 229/848 atomic regions from SNP 68403 to 69003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,953 DEBUG Processing 166/468 atomic regions from SNP 49562 to 50162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,980 DEBUG Processing 254/885 atomic regions from SNP 76153 to 76754 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,018 DEBUG Processing 102/1013 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,126 DEBUG Processing 230/848 atomic regions from SNP 68703 to 69303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,167 DEBUG Processing 97/1125 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,175 DEBUG Processing 167/468 atomic regions from SNP 49862 to 50462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,238 DEBUG Processing 255/885 atomic regions from SNP 76454 to 77055 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,281 DEBUG Processing 103/1013 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,368 DEBUG Processing 231/848 atomic regions from SNP 69003 to 69603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,394 DEBUG Processing 168/468 atomic regions from SNP 50162 to 50762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,448 DEBUG Processing 98/1125 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,484 DEBUG Processing 256/885 atomic regions from SNP 76755 to 77356 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,545 DEBUG Processing 104/1013 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,600 DEBUG Processing 232/848 atomic regions from SNP 69303 to 69903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,609 DEBUG Processing 169/468 atomic regions from SNP 50462 to 51062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,729 DEBUG Processing 99/1125 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,734 DEBUG Processing 257/885 atomic regions from SNP 77056 to 77657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,826 DEBUG Processing 105/1013 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,831 DEBUG Processing 233/848 atomic regions from SNP 69603 to 70203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,832 DEBUG Processing 170/468 atomic regions from SNP 50762 to 51362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,981 DEBUG Processing 258/885 atomic regions from SNP 77357 to 77958 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,006 DEBUG Processing 100/1125 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,063 DEBUG Processing 171/468 atomic regions from SNP 51062 to 51662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,071 DEBUG Processing 234/848 atomic regions from SNP 69903 to 70503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,114 DEBUG Processing 106/1013 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,224 DEBUG Processing 259/885 atomic regions from SNP 77658 to 78259 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,287 DEBUG Processing 101/1125 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,296 DEBUG Processing 172/468 atomic regions from SNP 51362 to 51962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,317 DEBUG Processing 235/848 atomic regions from SNP 70203 to 70803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,371 DEBUG Processing 107/1013 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,465 DEBUG Processing 260/885 atomic regions from SNP 77959 to 78560 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,534 DEBUG Processing 173/468 atomic regions from SNP 51662 to 52262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,565 DEBUG Processing 236/848 atomic regions from SNP 70503 to 71103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,570 DEBUG Processing 102/1125 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,633 DEBUG Processing 108/1013 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,736 DEBUG Processing 261/885 atomic regions from SNP 78260 to 78861 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,763 DEBUG Processing 174/468 atomic regions from SNP 51962 to 52562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,813 DEBUG Processing 237/848 atomic regions from SNP 70803 to 71403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,858 DEBUG Processing 103/1125 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,892 DEBUG Processing 109/1013 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,990 DEBUG Processing 175/468 atomic regions from SNP 52262 to 52862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,009 DEBUG Processing 262/885 atomic regions from SNP 78561 to 79162 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,049 DEBUG Segmenting atomic regions: 2025-01-31 09:45:12,054 DEBUG Processing 238/848 atomic regions from SNP 71103 to 71703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,150 DEBUG Processing 104/1125 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,153 DEBUG Processing 110/1013 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,166 DEBUG Processing 1/642 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,220 DEBUG Processing 176/468 atomic regions from SNP 52562 to 53162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,283 DEBUG Processing 263/885 atomic regions from SNP 78862 to 79463 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,288 DEBUG Processing 239/848 atomic regions from SNP 71403 to 72003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,420 DEBUG Processing 111/1013 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,435 DEBUG Processing 2/642 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,435 DEBUG Processing 105/1125 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,460 DEBUG Processing 177/468 atomic regions from SNP 52862 to 53462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,525 DEBUG Processing 240/848 atomic regions from SNP 71703 to 72303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,560 DEBUG Processing 264/885 atomic regions from SNP 79163 to 79764 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,685 DEBUG Processing 112/1013 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,694 DEBUG Processing 3/642 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,697 DEBUG Processing 178/468 atomic regions from SNP 53162 to 53762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,715 DEBUG Processing 106/1125 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,775 DEBUG Processing 241/848 atomic regions from SNP 72003 to 72603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,827 DEBUG Processing 265/885 atomic regions from SNP 79464 to 80065 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,930 DEBUG Processing 179/468 atomic regions from SNP 53462 to 54062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,937 DEBUG Processing 4/642 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,949 DEBUG Processing 113/1013 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,996 DEBUG Processing 107/1125 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,023 DEBUG Processing 242/848 atomic regions from SNP 72303 to 72903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,091 DEBUG Processing 266/885 atomic regions from SNP 79765 to 80366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,160 DEBUG Processing 180/468 atomic regions from SNP 53762 to 54362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,205 DEBUG Processing 5/642 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,212 DEBUG Processing 114/1013 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,268 DEBUG Processing 243/848 atomic regions from SNP 72603 to 73203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,275 DEBUG Processing 108/1125 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,342 DEBUG Processing 267/885 atomic regions from SNP 80066 to 80667 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,391 DEBUG Processing 181/468 atomic regions from SNP 54062 to 54662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,478 DEBUG Processing 115/1013 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,483 DEBUG Processing 6/642 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,506 DEBUG Processing 244/848 atomic regions from SNP 72903 to 73503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,554 DEBUG Processing 109/1125 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,596 DEBUG Processing 268/885 atomic regions from SNP 80367 to 80968 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,624 DEBUG Processing 182/468 atomic regions from SNP 54362 to 54962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,778 DEBUG Processing 245/848 atomic regions from SNP 73203 to 73803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,779 DEBUG Processing 7/642 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,787 DEBUG Processing 116/1013 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,876 DEBUG Processing 110/1125 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,904 DEBUG Processing 269/885 atomic regions from SNP 80668 to 81269 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,909 DEBUG Processing 183/468 atomic regions from SNP 54662 to 55262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,018 DEBUG Processing 246/848 atomic regions from SNP 73503 to 74103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,045 DEBUG Processing 8/642 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,063 DEBUG Processing 117/1013 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,135 DEBUG Processing 184/468 atomic regions from SNP 54962 to 55562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,152 DEBUG Processing 270/885 atomic regions from SNP 80969 to 81570 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,155 DEBUG Processing 111/1125 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,252 DEBUG Processing 247/848 atomic regions from SNP 73803 to 74403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,313 DEBUG Processing 9/642 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,334 DEBUG Processing 118/1013 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,366 DEBUG Processing 185/468 atomic regions from SNP 55262 to 55862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,403 DEBUG Processing 271/885 atomic regions from SNP 81270 to 81871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,439 DEBUG Processing 112/1125 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,489 DEBUG Processing 248/848 atomic regions from SNP 74103 to 74703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,577 DEBUG Processing 10/642 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,600 DEBUG Processing 119/1013 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,602 DEBUG Processing 186/468 atomic regions from SNP 55562 to 56162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,652 DEBUG Processing 272/885 atomic regions from SNP 81571 to 82172 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,709 DEBUG Processing 113/1125 atomic regions from SNP 33712 to 34312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,722 DEBUG Processing 249/848 atomic regions from SNP 74403 to 75003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,810 DEBUG Processing 11/642 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,836 DEBUG Processing 187/468 atomic regions from SNP 55862 to 56462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,866 DEBUG Processing 120/1013 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,892 DEBUG Processing 273/885 atomic regions from SNP 81872 to 82473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,953 DEBUG Processing 250/848 atomic regions from SNP 74703 to 75303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,985 DEBUG Processing 114/1125 atomic regions from SNP 34012 to 34612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,056 DEBUG Processing 12/642 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,066 DEBUG Processing 188/468 atomic regions from SNP 56162 to 56762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,131 DEBUG Processing 121/1013 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,139 DEBUG Processing 274/885 atomic regions from SNP 82173 to 82774 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,193 DEBUG Processing 251/848 atomic regions from SNP 75003 to 75603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,270 DEBUG Processing 115/1125 atomic regions from SNP 34312 to 34912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,291 DEBUG Processing 13/642 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,295 DEBUG Processing 189/468 atomic regions from SNP 56462 to 57062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,386 DEBUG Processing 275/885 atomic regions from SNP 82474 to 83075 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,394 DEBUG Processing 122/1013 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,429 DEBUG Processing 252/848 atomic regions from SNP 75303 to 75903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,521 DEBUG Processing 190/468 atomic regions from SNP 56762 to 57362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,541 DEBUG Processing 14/642 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,544 DEBUG Processing 116/1125 atomic regions from SNP 34612 to 35212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,628 DEBUG Processing 276/885 atomic regions from SNP 82775 to 83376 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,651 DEBUG Processing 123/1013 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,667 DEBUG Processing 253/848 atomic regions from SNP 75603 to 76203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,755 DEBUG Processing 191/468 atomic regions from SNP 57062 to 57662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,808 DEBUG Processing 15/642 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,818 DEBUG Processing 117/1125 atomic regions from SNP 34912 to 35512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,873 DEBUG Processing 277/885 atomic regions from SNP 83076 to 83677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,904 DEBUG Processing 254/848 atomic regions from SNP 75903 to 76503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,908 DEBUG Processing 124/1013 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,999 DEBUG Processing 192/468 atomic regions from SNP 57362 to 57962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,072 DEBUG Processing 16/642 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,094 DEBUG Processing 118/1125 atomic regions from SNP 35212 to 35812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,116 DEBUG Processing 278/885 atomic regions from SNP 83377 to 83977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,139 DEBUG Processing 255/848 atomic regions from SNP 76203 to 76803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,166 DEBUG Processing 125/1013 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,254 DEBUG Processing 193/468 atomic regions from SNP 57662 to 58262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,332 DEBUG Processing 17/642 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,353 DEBUG Processing 279/885 atomic regions from SNP 83677 to 84277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,365 DEBUG Processing 119/1125 atomic regions from SNP 35512 to 36112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,373 DEBUG Processing 256/848 atomic regions from SNP 76503 to 77103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,437 DEBUG Processing 126/1013 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,500 DEBUG Processing 194/468 atomic regions from SNP 57962 to 58562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,579 DEBUG Processing 18/642 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,598 DEBUG Processing 280/885 atomic regions from SNP 83977 to 84577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,610 DEBUG Processing 257/848 atomic regions from SNP 76803 to 77403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,640 DEBUG Processing 120/1125 atomic regions from SNP 35812 to 36412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,720 DEBUG Processing 127/1013 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,733 DEBUG Processing 195/468 atomic regions from SNP 58262 to 58862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,831 DEBUG Processing 19/642 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,841 DEBUG Processing 281/885 atomic regions from SNP 84277 to 84877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,849 DEBUG Processing 258/848 atomic regions from SNP 77103 to 77703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,914 DEBUG Processing 121/1125 atomic regions from SNP 36112 to 36712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,001 DEBUG Processing 196/468 atomic regions from SNP 58562 to 59162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,060 DEBUG Processing 128/1013 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,144 DEBUG Processing 282/885 atomic regions from SNP 84577 to 85177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,150 DEBUG Processing 259/848 atomic regions from SNP 77403 to 78003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,157 DEBUG Processing 20/642 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,235 DEBUG Processing 122/1125 atomic regions from SNP 36412 to 37012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,268 DEBUG Processing 197/468 atomic regions from SNP 58862 to 59462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,452 DEBUG Processing 129/1013 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,512 DEBUG Processing 283/885 atomic regions from SNP 84877 to 85477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,513 DEBUG Processing 260/848 atomic regions from SNP 77703 to 78303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,544 DEBUG Processing 21/642 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,552 DEBUG Processing 198/468 atomic regions from SNP 59162 to 59762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,592 DEBUG Processing 123/1125 atomic regions from SNP 36712 to 37312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,754 DEBUG Processing 130/1013 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,780 DEBUG Processing 284/885 atomic regions from SNP 85177 to 85777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,783 DEBUG Processing 261/848 atomic regions from SNP 78003 to 78603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,829 DEBUG Processing 199/468 atomic regions from SNP 59462 to 60062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,853 DEBUG Processing 22/642 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,977 DEBUG Processing 124/1125 atomic regions from SNP 37012 to 37612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,064 DEBUG Processing 285/885 atomic regions from SNP 85477 to 86077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,072 DEBUG Processing 262/848 atomic regions from SNP 78303 to 78903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,100 DEBUG Processing 200/468 atomic regions from SNP 59762 to 60362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,102 DEBUG Processing 131/1013 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,136 DEBUG Processing 23/642 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,281 DEBUG Processing 125/1125 atomic regions from SNP 37312 to 37912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,316 DEBUG Processing 286/885 atomic regions from SNP 85777 to 86377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,319 DEBUG Processing 263/848 atomic regions from SNP 78603 to 79203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,356 DEBUG Processing 201/468 atomic regions from SNP 60062 to 60662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,397 DEBUG Processing 132/1013 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,406 DEBUG Processing 24/642 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,568 DEBUG Processing 126/1125 atomic regions from SNP 37612 to 38212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,568 DEBUG Processing 264/848 atomic regions from SNP 78903 to 79503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,572 DEBUG Processing 287/885 atomic regions from SNP 86077 to 86677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,607 DEBUG Processing 202/468 atomic regions from SNP 60362 to 60962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,666 DEBUG Processing 25/642 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,687 DEBUG Processing 133/1013 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,823 DEBUG Processing 265/848 atomic regions from SNP 79203 to 79803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,833 DEBUG Processing 288/885 atomic regions from SNP 86377 to 86977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,858 DEBUG Processing 127/1125 atomic regions from SNP 37912 to 38512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,870 DEBUG Processing 203/468 atomic regions from SNP 60662 to 61262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,945 DEBUG Processing 26/642 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,995 DEBUG Processing 134/1013 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,106 DEBUG Processing 266/848 atomic regions from SNP 79503 to 80103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,124 DEBUG Processing 289/885 atomic regions from SNP 86677 to 87277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,163 DEBUG Processing 204/468 atomic regions from SNP 60962 to 61562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,167 DEBUG Processing 128/1125 atomic regions from SNP 38212 to 38812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,211 DEBUG Processing 27/642 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,323 DEBUG Processing 135/1013 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,454 DEBUG Processing 267/848 atomic regions from SNP 79803 to 80403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,482 DEBUG Processing 290/885 atomic regions from SNP 86977 to 87577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,536 DEBUG Processing 129/1125 atomic regions from SNP 38512 to 39112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,542 DEBUG Processing 205/468 atomic regions from SNP 61262 to 61862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,566 DEBUG Processing 28/642 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,710 DEBUG Processing 136/1013 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,773 DEBUG Processing 268/848 atomic regions from SNP 80103 to 80703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,781 DEBUG Processing 291/885 atomic regions from SNP 87277 to 87877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,828 DEBUG Processing 29/642 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,843 DEBUG Processing 206/468 atomic regions from SNP 61562 to 62162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,853 DEBUG Processing 130/1125 atomic regions from SNP 38812 to 39412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,012 DEBUG Processing 137/1013 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,084 DEBUG Processing 269/848 atomic regions from SNP 80403 to 81003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,114 DEBUG Processing 292/885 atomic regions from SNP 87577 to 88177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,163 DEBUG Processing 30/642 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,198 DEBUG Processing 207/468 atomic regions from SNP 61862 to 62462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,241 DEBUG Processing 131/1125 atomic regions from SNP 39112 to 39712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,330 DEBUG Processing 138/1013 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,340 DEBUG Processing 270/848 atomic regions from SNP 80703 to 81303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,372 DEBUG Processing 293/885 atomic regions from SNP 87877 to 88477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,409 DEBUG Processing 31/642 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,482 DEBUG Processing 208/468 atomic regions from SNP 62162 to 62762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,530 DEBUG Processing 132/1125 atomic regions from SNP 39412 to 40012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,589 DEBUG Processing 271/848 atomic regions from SNP 81003 to 81603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,613 DEBUG Processing 139/1013 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,625 DEBUG Processing 294/885 atomic regions from SNP 88177 to 88777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,646 DEBUG Processing 32/642 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,741 DEBUG Processing 209/468 atomic regions from SNP 62462 to 63062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,815 DEBUG Processing 133/1125 atomic regions from SNP 39712 to 40312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,846 DEBUG Processing 272/848 atomic regions from SNP 81303 to 81903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,873 DEBUG Processing 33/642 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,877 DEBUG Processing 295/885 atomic regions from SNP 88477 to 89077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,907 DEBUG Processing 140/1013 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,968 DEBUG Processing 210/468 atomic regions from SNP 62762 to 63362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,096 DEBUG Processing 273/848 atomic regions from SNP 81603 to 82203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,096 DEBUG Processing 134/1125 atomic regions from SNP 40012 to 40612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,133 DEBUG Processing 34/642 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,134 DEBUG Processing 296/885 atomic regions from SNP 88777 to 89377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,196 DEBUG Processing 141/1013 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,203 DEBUG Processing 211/468 atomic regions from SNP 63062 to 63662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,335 DEBUG Processing 274/848 atomic regions from SNP 81903 to 82503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,362 DEBUG Processing 35/642 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,369 DEBUG Processing 135/1125 atomic regions from SNP 40312 to 40912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,383 DEBUG Processing 297/885 atomic regions from SNP 89077 to 89677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,444 DEBUG Processing 212/468 atomic regions from SNP 63362 to 63962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,489 DEBUG Processing 142/1013 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,572 DEBUG Processing 275/848 atomic regions from SNP 82203 to 82803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,594 DEBUG Processing 36/642 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,634 DEBUG Processing 298/885 atomic regions from SNP 89377 to 89977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,649 DEBUG Processing 136/1125 atomic regions from SNP 40612 to 41212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,669 DEBUG Processing 213/468 atomic regions from SNP 63662 to 64262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,781 DEBUG Processing 143/1013 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,807 DEBUG Processing 276/848 atomic regions from SNP 82503 to 83103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,827 DEBUG Processing 37/642 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,879 DEBUG Processing 299/885 atomic regions from SNP 89677 to 90277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,915 DEBUG Processing 214/468 atomic regions from SNP 63962 to 64562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,928 DEBUG Processing 137/1125 atomic regions from SNP 40912 to 41512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,054 DEBUG Processing 277/848 atomic regions from SNP 82803 to 83403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,056 DEBUG Processing 38/642 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,069 DEBUG Processing 144/1013 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,124 DEBUG Processing 300/885 atomic regions from SNP 89977 to 90577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,158 DEBUG Processing 215/468 atomic regions from SNP 64262 to 64862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,201 DEBUG Processing 138/1125 atomic regions from SNP 41212 to 41812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,282 DEBUG Processing 39/642 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,308 DEBUG Processing 278/848 atomic regions from SNP 83103 to 83703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,361 DEBUG Processing 145/1013 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,368 DEBUG Processing 301/885 atomic regions from SNP 90277 to 90877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,390 DEBUG Processing 216/468 atomic regions from SNP 64562 to 65162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,475 DEBUG Processing 139/1125 atomic regions from SNP 41512 to 42112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,511 DEBUG Processing 40/642 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,571 DEBUG Processing 279/848 atomic regions from SNP 83403 to 84003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,617 DEBUG Processing 302/885 atomic regions from SNP 90577 to 91177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,622 DEBUG Processing 217/468 atomic regions from SNP 64862 to 65462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,657 DEBUG Processing 146/1013 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,735 DEBUG Processing 41/642 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,748 DEBUG Processing 140/1125 atomic regions from SNP 41812 to 42412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,811 DEBUG Processing 280/848 atomic regions from SNP 83703 to 84303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,853 DEBUG Processing 218/468 atomic regions from SNP 65162 to 65762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,865 DEBUG Processing 303/885 atomic regions from SNP 90877 to 91477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,949 DEBUG Processing 147/1013 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,963 DEBUG Processing 42/642 atomic regions from SNP 12341 to 12941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,024 DEBUG Processing 141/1125 atomic regions from SNP 42112 to 42712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,056 DEBUG Processing 281/848 atomic regions from SNP 84003 to 84603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,081 DEBUG Processing 219/468 atomic regions from SNP 65462 to 66062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,140 DEBUG Processing 304/885 atomic regions from SNP 91177 to 91777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,191 DEBUG Processing 43/642 atomic regions from SNP 12641 to 13241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,227 DEBUG Processing 148/1013 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,293 DEBUG Processing 282/848 atomic regions from SNP 84303 to 84903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,296 DEBUG Processing 142/1125 atomic regions from SNP 42412 to 43012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,306 DEBUG Processing 220/468 atomic regions from SNP 65762 to 66362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,395 DEBUG Processing 305/885 atomic regions from SNP 91477 to 92077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,416 DEBUG Processing 44/642 atomic regions from SNP 12941 to 13541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,511 DEBUG Processing 149/1013 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,536 DEBUG Processing 221/468 atomic regions from SNP 66062 to 66662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,538 DEBUG Processing 283/848 atomic regions from SNP 84603 to 85203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,577 DEBUG Processing 143/1125 atomic regions from SNP 42712 to 43312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,641 DEBUG Processing 306/885 atomic regions from SNP 91777 to 92377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,645 DEBUG Processing 45/642 atomic regions from SNP 13241 to 13841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,771 DEBUG Processing 222/468 atomic regions from SNP 66362 to 66962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,783 DEBUG Processing 284/848 atomic regions from SNP 84903 to 85503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,813 DEBUG Processing 150/1013 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,859 DEBUG Processing 144/1125 atomic regions from SNP 43012 to 43612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,876 DEBUG Processing 46/642 atomic regions from SNP 13541 to 14141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,889 DEBUG Processing 307/885 atomic regions from SNP 92077 to 92677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,999 DEBUG Processing 223/468 atomic regions from SNP 66662 to 67262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,022 DEBUG Processing 285/848 atomic regions from SNP 85203 to 85803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,111 DEBUG Processing 47/642 atomic regions from SNP 13841 to 14441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,115 DEBUG Processing 151/1013 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,132 DEBUG Processing 308/885 atomic regions from SNP 92377 to 92977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,139 DEBUG Processing 145/1125 atomic regions from SNP 43312 to 43912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,250 DEBUG Processing 224/468 atomic regions from SNP 66962 to 67562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,260 DEBUG Processing 286/848 atomic regions from SNP 85503 to 86103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,347 DEBUG Processing 48/642 atomic regions from SNP 14141 to 14741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,378 DEBUG Processing 309/885 atomic regions from SNP 92677 to 93277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,409 DEBUG Processing 152/1013 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,419 DEBUG Processing 146/1125 atomic regions from SNP 43612 to 44212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,481 DEBUG Processing 225/468 atomic regions from SNP 67262 to 67862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,499 DEBUG Processing 287/848 atomic regions from SNP 85803 to 86403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,577 DEBUG Processing 49/642 atomic regions from SNP 14441 to 15041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,621 DEBUG Processing 310/885 atomic regions from SNP 92977 to 93577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,689 DEBUG Processing 153/1013 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,692 DEBUG Processing 147/1125 atomic regions from SNP 43912 to 44512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,707 DEBUG Processing 226/468 atomic regions from SNP 67562 to 68162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,732 DEBUG Processing 288/848 atomic regions from SNP 86103 to 86703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,804 DEBUG Processing 50/642 atomic regions from SNP 14741 to 15341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,864 DEBUG Processing 311/885 atomic regions from SNP 93277 to 93877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,931 DEBUG Processing 227/468 atomic regions from SNP 67862 to 68462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,962 DEBUG Processing 148/1125 atomic regions from SNP 44212 to 44812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,966 DEBUG Processing 154/1013 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,967 DEBUG Processing 289/848 atomic regions from SNP 86403 to 87003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,038 DEBUG Processing 51/642 atomic regions from SNP 15041 to 15641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,105 DEBUG Processing 312/885 atomic regions from SNP 93577 to 94177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,147 DEBUG Processing 228/468 atomic regions from SNP 68162 to 68762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,204 DEBUG Processing 290/848 atomic regions from SNP 86703 to 87303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,237 DEBUG Processing 149/1125 atomic regions from SNP 44512 to 45112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,240 DEBUG Processing 155/1013 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,279 DEBUG Processing 52/642 atomic regions from SNP 15341 to 15941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,343 DEBUG Processing 313/885 atomic regions from SNP 93877 to 94477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,364 DEBUG Processing 229/468 atomic regions from SNP 68462 to 69062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,432 DEBUG Processing 291/848 atomic regions from SNP 87003 to 87603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,507 DEBUG Processing 150/1125 atomic regions from SNP 44812 to 45412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,513 DEBUG Processing 53/642 atomic regions from SNP 15641 to 16241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,522 DEBUG Processing 156/1013 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,584 DEBUG Processing 314/885 atomic regions from SNP 94177 to 94777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,591 DEBUG Processing 230/468 atomic regions from SNP 68762 to 69362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,659 DEBUG Processing 292/848 atomic regions from SNP 87303 to 87903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,740 DEBUG Processing 54/642 atomic regions from SNP 15941 to 16541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,776 DEBUG Processing 151/1125 atomic regions from SNP 45112 to 45712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,817 DEBUG Processing 157/1013 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,823 DEBUG Processing 231/468 atomic regions from SNP 69062 to 69662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,826 DEBUG Processing 315/885 atomic regions from SNP 94477 to 95077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,893 DEBUG Processing 293/848 atomic regions from SNP 87603 to 88203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,962 DEBUG Processing 55/642 atomic regions from SNP 16241 to 16841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,042 DEBUG Processing 152/1125 atomic regions from SNP 45412 to 46012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,051 DEBUG Processing 232/468 atomic regions from SNP 69362 to 69962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,081 DEBUG Processing 316/885 atomic regions from SNP 94777 to 95377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,113 DEBUG Processing 158/1013 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,129 DEBUG Processing 294/848 atomic regions from SNP 87903 to 88503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,185 DEBUG Processing 56/642 atomic regions from SNP 16541 to 17141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,270 DEBUG Processing 233/468 atomic regions from SNP 69662 to 70262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,307 DEBUG Processing 153/1125 atomic regions from SNP 45712 to 46312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,326 DEBUG Processing 317/885 atomic regions from SNP 95077 to 95677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,370 DEBUG Processing 295/848 atomic regions from SNP 88203 to 88803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,397 DEBUG Processing 159/1013 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,417 DEBUG Processing 57/642 atomic regions from SNP 16841 to 17441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,489 DEBUG Processing 234/468 atomic regions from SNP 69962 to 70562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,574 DEBUG Processing 318/885 atomic regions from SNP 95377 to 95977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,577 DEBUG Processing 154/1125 atomic regions from SNP 46012 to 46612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,622 DEBUG Processing 296/848 atomic regions from SNP 88503 to 89103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,651 DEBUG Processing 58/642 atomic regions from SNP 17141 to 17741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,707 DEBUG Processing 160/1013 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,716 DEBUG Processing 235/468 atomic regions from SNP 70262 to 70862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,813 DEBUG Processing 319/885 atomic regions from SNP 95677 to 96277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,845 DEBUG Processing 155/1125 atomic regions from SNP 46312 to 46912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,861 DEBUG Processing 297/848 atomic regions from SNP 88803 to 89403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,883 DEBUG Processing 59/642 atomic regions from SNP 17441 to 18041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,951 DEBUG Processing 236/468 atomic regions from SNP 70562 to 71162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,015 DEBUG Processing 161/1013 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,054 DEBUG Processing 320/885 atomic regions from SNP 95977 to 96577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,103 DEBUG Processing 298/848 atomic regions from SNP 89103 to 89703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,113 DEBUG Processing 60/642 atomic regions from SNP 17741 to 18341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,119 DEBUG Processing 156/1125 atomic regions from SNP 46612 to 47212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,182 DEBUG Processing 237/468 atomic regions from SNP 70862 to 71462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,291 DEBUG Processing 321/885 atomic regions from SNP 96277 to 96877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,306 DEBUG Processing 162/1013 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,339 DEBUG Processing 299/848 atomic regions from SNP 89403 to 90003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,343 DEBUG Processing 61/642 atomic regions from SNP 18041 to 18641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,412 DEBUG Processing 238/468 atomic regions from SNP 71162 to 71762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,413 DEBUG Processing 157/1125 atomic regions from SNP 46912 to 47512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,532 DEBUG Processing 322/885 atomic regions from SNP 96577 to 97177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,574 DEBUG Processing 62/642 atomic regions from SNP 18341 to 18941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,576 DEBUG Processing 300/848 atomic regions from SNP 89703 to 90303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,585 DEBUG Processing 163/1013 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,644 DEBUG Processing 239/468 atomic regions from SNP 71462 to 72062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,682 DEBUG Processing 158/1125 atomic regions from SNP 47212 to 47812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,772 DEBUG Processing 323/885 atomic regions from SNP 96877 to 97477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,812 DEBUG Processing 63/642 atomic regions from SNP 18641 to 19241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,813 DEBUG Processing 301/848 atomic regions from SNP 90003 to 90603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,874 DEBUG Processing 240/468 atomic regions from SNP 71762 to 72362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,888 DEBUG Processing 164/1013 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,945 DEBUG Processing 159/1125 atomic regions from SNP 47512 to 48112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,011 DEBUG Processing 324/885 atomic regions from SNP 97177 to 97777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,039 DEBUG Processing 64/642 atomic regions from SNP 18941 to 19541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,047 DEBUG Processing 302/848 atomic regions from SNP 90303 to 90903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,098 DEBUG Processing 241/468 atomic regions from SNP 72062 to 72662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,186 DEBUG Processing 165/1013 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,210 DEBUG Processing 160/1125 atomic regions from SNP 47812 to 48412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,250 DEBUG Processing 325/885 atomic regions from SNP 97477 to 98077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,267 DEBUG Processing 65/642 atomic regions from SNP 19241 to 19841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,280 DEBUG Processing 303/848 atomic regions from SNP 90603 to 91203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,319 DEBUG Processing 242/468 atomic regions from SNP 72362 to 72962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,473 DEBUG Processing 161/1125 atomic regions from SNP 48112 to 48712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,481 DEBUG Processing 166/1013 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,486 DEBUG Processing 326/885 atomic regions from SNP 97777 to 98377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,500 DEBUG Processing 66/642 atomic regions from SNP 19541 to 20141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,509 DEBUG Processing 304/848 atomic regions from SNP 90903 to 91503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,545 DEBUG Processing 243/468 atomic regions from SNP 72662 to 73262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,736 DEBUG Processing 327/885 atomic regions from SNP 98077 to 98677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,742 DEBUG Processing 67/642 atomic regions from SNP 19841 to 20441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,751 DEBUG Processing 305/848 atomic regions from SNP 91203 to 91803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,752 DEBUG Processing 162/1125 atomic regions from SNP 48412 to 49012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,783 DEBUG Processing 244/468 atomic regions from SNP 72962 to 73562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,785 DEBUG Processing 167/1013 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,978 DEBUG Processing 68/642 atomic regions from SNP 20141 to 20741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,988 DEBUG Processing 328/885 atomic regions from SNP 98377 to 98977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,996 DEBUG Processing 306/848 atomic regions from SNP 91503 to 92103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,024 DEBUG Processing 245/468 atomic regions from SNP 73262 to 73862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,032 DEBUG Processing 163/1125 atomic regions from SNP 48712 to 49312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,088 DEBUG Processing 168/1013 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,244 DEBUG Processing 69/642 atomic regions from SNP 20441 to 21041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,270 DEBUG Processing 307/848 atomic regions from SNP 91803 to 92403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,271 DEBUG Processing 329/885 atomic regions from SNP 98677 to 99277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,290 DEBUG Processing 246/468 atomic regions from SNP 73562 to 74162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,342 DEBUG Processing 164/1125 atomic regions from SNP 49012 to 49612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,470 DEBUG Processing 169/1013 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,564 DEBUG Processing 70/642 atomic regions from SNP 20741 to 21341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,600 DEBUG Processing 308/848 atomic regions from SNP 92103 to 92703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,600 DEBUG Processing 247/468 atomic regions from SNP 73862 to 74462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,608 DEBUG Processing 330/885 atomic regions from SNP 98977 to 99577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,674 DEBUG Processing 165/1125 atomic regions from SNP 49312 to 49912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,893 DEBUG Processing 170/1013 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,927 DEBUG Processing 71/642 atomic regions from SNP 21041 to 21641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,974 DEBUG Processing 309/848 atomic regions from SNP 92403 to 93003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,978 DEBUG Processing 248/468 atomic regions from SNP 74162 to 74762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,989 DEBUG Processing 331/885 atomic regions from SNP 99277 to 99877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,047 DEBUG Processing 166/1125 atomic regions from SNP 49612 to 50212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,305 DEBUG Processing 72/642 atomic regions from SNP 21341 to 21941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,326 DEBUG Processing 171/1013 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,364 DEBUG Processing 310/848 atomic regions from SNP 92703 to 93303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,378 DEBUG Processing 249/468 atomic regions from SNP 74462 to 75062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,388 DEBUG Processing 332/885 atomic regions from SNP 99577 to 100177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,451 DEBUG Processing 167/1125 atomic regions from SNP 49912 to 50512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,703 DEBUG Processing 73/642 atomic regions from SNP 21641 to 22241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,734 DEBUG Processing 250/468 atomic regions from SNP 74762 to 75362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,738 DEBUG Processing 311/848 atomic regions from SNP 93003 to 93603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,751 DEBUG Processing 333/885 atomic regions from SNP 99877 to 100477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,761 DEBUG Processing 172/1013 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,809 DEBUG Processing 168/1125 atomic regions from SNP 50212 to 50812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,952 DEBUG Processing 74/642 atomic regions from SNP 21941 to 22541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,983 DEBUG Processing 251/468 atomic regions from SNP 75062 to 75662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,995 DEBUG Processing 312/848 atomic regions from SNP 93303 to 93903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,013 DEBUG Processing 334/885 atomic regions from SNP 100177 to 100777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,077 DEBUG Processing 173/1013 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,106 DEBUG Processing 169/1125 atomic regions from SNP 50512 to 51112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,204 DEBUG Processing 75/642 atomic regions from SNP 22241 to 22841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,218 DEBUG Processing 252/468 atomic regions from SNP 75362 to 75962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,242 DEBUG Processing 313/848 atomic regions from SNP 93603 to 94203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,281 DEBUG Processing 335/885 atomic regions from SNP 100477 to 101077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,382 DEBUG Processing 174/1013 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,388 DEBUG Processing 170/1125 atomic regions from SNP 50812 to 51412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,457 DEBUG Processing 76/642 atomic regions from SNP 22541 to 23141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,458 DEBUG Processing 253/468 atomic regions from SNP 75662 to 76262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,493 DEBUG Processing 314/848 atomic regions from SNP 93903 to 94503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,559 DEBUG Processing 336/885 atomic regions from SNP 100777 to 101377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,717 DEBUG Processing 171/1125 atomic regions from SNP 51112 to 51712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,731 DEBUG Processing 175/1013 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,763 DEBUG Processing 77/642 atomic regions from SNP 22841 to 23441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,764 DEBUG Processing 254/468 atomic regions from SNP 75962 to 76562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,795 DEBUG Processing 315/848 atomic regions from SNP 94203 to 94803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,843 DEBUG Processing 337/885 atomic regions from SNP 101077 to 101677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,086 DEBUG Processing 172/1125 atomic regions from SNP 51412 to 52012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,092 DEBUG Processing 255/468 atomic regions from SNP 76262 to 76862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,106 DEBUG Processing 176/1013 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,107 DEBUG Processing 78/642 atomic regions from SNP 23141 to 23741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,141 DEBUG Processing 316/848 atomic regions from SNP 94503 to 95103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,167 DEBUG Processing 338/885 atomic regions from SNP 101377 to 101977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,405 DEBUG Processing 256/468 atomic regions from SNP 76562 to 77162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,436 DEBUG Processing 79/642 atomic regions from SNP 23441 to 24041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,484 DEBUG Processing 173/1125 atomic regions from SNP 51712 to 52312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,518 DEBUG Processing 317/848 atomic regions from SNP 94803 to 95403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,530 DEBUG Processing 177/1013 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,541 DEBUG Processing 339/885 atomic regions from SNP 101677 to 102277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,696 DEBUG Processing 257/468 atomic regions from SNP 76862 to 77462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,722 DEBUG Processing 80/642 atomic regions from SNP 23741 to 24341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,789 DEBUG Processing 174/1125 atomic regions from SNP 52012 to 52612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,828 DEBUG Processing 318/848 atomic regions from SNP 95103 to 95703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,841 DEBUG Processing 340/885 atomic regions from SNP 101977 to 102577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,874 DEBUG Processing 178/1013 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,946 DEBUG Processing 258/468 atomic regions from SNP 77162 to 77762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,969 DEBUG Processing 81/642 atomic regions from SNP 24041 to 24641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,072 DEBUG Processing 175/1125 atomic regions from SNP 52312 to 52912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,083 DEBUG Processing 319/848 atomic regions from SNP 95403 to 96003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,099 DEBUG Processing 341/885 atomic regions from SNP 102277 to 102877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,169 DEBUG Processing 179/1013 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,192 DEBUG Processing 259/468 atomic regions from SNP 77462 to 78062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,220 DEBUG Processing 82/642 atomic regions from SNP 24341 to 24941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,324 DEBUG Processing 320/848 atomic regions from SNP 95703 to 96303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,343 DEBUG Processing 342/885 atomic regions from SNP 102577 to 103177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,351 DEBUG Processing 176/1125 atomic regions from SNP 52612 to 53212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,424 DEBUG Processing 260/468 atomic regions from SNP 77762 to 78362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,447 DEBUG Processing 180/1013 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,458 DEBUG Processing 83/642 atomic regions from SNP 24641 to 25241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,599 DEBUG Processing 321/848 atomic regions from SNP 96003 to 96603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,647 DEBUG Processing 343/885 atomic regions from SNP 102877 to 103477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,685 DEBUG Processing 261/468 atomic regions from SNP 78062 to 78662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,694 DEBUG Processing 177/1125 atomic regions from SNP 52912 to 53512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,728 DEBUG Processing 84/642 atomic regions from SNP 24941 to 25541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,770 DEBUG Processing 181/1013 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,851 DEBUG Processing 322/848 atomic regions from SNP 96303 to 96903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,918 DEBUG Processing 344/885 atomic regions from SNP 103177 to 103777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,926 DEBUG Processing 262/468 atomic regions from SNP 78362 to 78962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,970 DEBUG Processing 85/642 atomic regions from SNP 25241 to 25841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,989 DEBUG Processing 178/1125 atomic regions from SNP 53212 to 53812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,071 DEBUG Processing 182/1013 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,104 DEBUG Processing 323/848 atomic regions from SNP 96603 to 97203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,162 DEBUG Processing 345/885 atomic regions from SNP 103477 to 104077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,162 DEBUG Processing 263/468 atomic regions from SNP 78662 to 79262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,208 DEBUG Processing 86/642 atomic regions from SNP 25541 to 26141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,297 DEBUG Processing 179/1125 atomic regions from SNP 53512 to 54112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,357 DEBUG Processing 324/848 atomic regions from SNP 96903 to 97503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,366 DEBUG Processing 183/1013 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,396 DEBUG Processing 264/468 atomic regions from SNP 78962 to 79562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,436 DEBUG Processing 346/885 atomic regions from SNP 103777 to 104377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,438 DEBUG Processing 87/642 atomic regions from SNP 25841 to 26441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,600 DEBUG Processing 180/1125 atomic regions from SNP 53812 to 54412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,611 DEBUG Processing 325/848 atomic regions from SNP 97203 to 97803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,640 DEBUG Processing 265/468 atomic regions from SNP 79262 to 79862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,657 DEBUG Processing 184/1013 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,670 DEBUG Processing 88/642 atomic regions from SNP 26141 to 26741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,708 DEBUG Processing 347/885 atomic regions from SNP 104077 to 104677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,855 DEBUG Processing 326/848 atomic regions from SNP 97503 to 98103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,874 DEBUG Processing 181/1125 atomic regions from SNP 54112 to 54712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,876 DEBUG Processing 266/468 atomic regions from SNP 79562 to 80162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,905 DEBUG Processing 89/642 atomic regions from SNP 26441 to 27041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,933 DEBUG Processing 185/1013 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,953 DEBUG Processing 348/885 atomic regions from SNP 104377 to 104977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,095 DEBUG Processing 327/848 atomic regions from SNP 97803 to 98403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,125 DEBUG Processing 267/468 atomic regions from SNP 79862 to 80462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,152 DEBUG Processing 182/1125 atomic regions from SNP 54412 to 55012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,167 DEBUG Processing 90/642 atomic regions from SNP 26741 to 27341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,203 DEBUG Processing 349/885 atomic regions from SNP 104677 to 105277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,214 DEBUG Processing 186/1013 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,328 DEBUG Processing 328/848 atomic regions from SNP 98103 to 98703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,397 DEBUG Processing 268/468 atomic regions from SNP 80162 to 80762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,428 DEBUG Processing 183/1125 atomic regions from SNP 54712 to 55312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,429 DEBUG Processing 91/642 atomic regions from SNP 27041 to 27641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,447 DEBUG Processing 350/885 atomic regions from SNP 104977 to 105577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,509 DEBUG Processing 187/1013 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,560 DEBUG Processing 329/848 atomic regions from SNP 98403 to 99003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,633 DEBUG Processing 269/468 atomic regions from SNP 80462 to 81062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,666 DEBUG Processing 92/642 atomic regions from SNP 27341 to 27941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,693 DEBUG Processing 351/885 atomic regions from SNP 105277 to 105877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,702 DEBUG Processing 184/1125 atomic regions from SNP 55012 to 55612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,780 DEBUG Processing 188/1013 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,794 DEBUG Processing 330/848 atomic regions from SNP 98703 to 99303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,869 DEBUG Processing 270/468 atomic regions from SNP 80762 to 81362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,905 DEBUG Processing 93/642 atomic regions from SNP 27641 to 28241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,937 DEBUG Processing 352/885 atomic regions from SNP 105577 to 106177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,977 DEBUG Processing 185/1125 atomic regions from SNP 55312 to 55912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,025 DEBUG Processing 331/848 atomic regions from SNP 99003 to 99603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,065 DEBUG Processing 189/1013 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,104 DEBUG Processing 271/468 atomic regions from SNP 81062 to 81662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,148 DEBUG Processing 94/642 atomic regions from SNP 27941 to 28541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,178 DEBUG Processing 353/885 atomic regions from SNP 105877 to 106477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,259 DEBUG Processing 186/1125 atomic regions from SNP 55612 to 56212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,263 DEBUG Processing 332/848 atomic regions from SNP 99303 to 99903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,333 DEBUG Processing 272/468 atomic regions from SNP 81362 to 81962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,357 DEBUG Processing 190/1013 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,386 DEBUG Processing 95/642 atomic regions from SNP 28241 to 28841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,415 DEBUG Processing 354/885 atomic regions from SNP 106177 to 106777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,496 DEBUG Processing 333/848 atomic regions from SNP 99603 to 100203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,560 DEBUG Processing 273/468 atomic regions from SNP 81662 to 82262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,563 DEBUG Processing 187/1125 atomic regions from SNP 55912 to 56512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,623 DEBUG Processing 96/642 atomic regions from SNP 28541 to 29141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,630 DEBUG Processing 191/1013 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,676 DEBUG Processing 355/885 atomic regions from SNP 106477 to 107077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,726 DEBUG Processing 334/848 atomic regions from SNP 99903 to 100503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,782 DEBUG Processing 274/468 atomic regions from SNP 81962 to 82562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,870 DEBUG Processing 97/642 atomic regions from SNP 28841 to 29441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,870 DEBUG Processing 188/1125 atomic regions from SNP 56212 to 56812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,920 DEBUG Processing 192/1013 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,932 DEBUG Processing 356/885 atomic regions from SNP 106777 to 107377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,963 DEBUG Processing 335/848 atomic regions from SNP 100203 to 100803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,008 DEBUG Processing 275/468 atomic regions from SNP 82262 to 82862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,124 DEBUG Processing 98/642 atomic regions from SNP 29141 to 29741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,175 DEBUG Processing 357/885 atomic regions from SNP 107077 to 107677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,178 DEBUG Processing 189/1125 atomic regions from SNP 56512 to 57112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,204 DEBUG Processing 336/848 atomic regions from SNP 100503 to 101103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,215 DEBUG Processing 193/1013 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,249 DEBUG Processing 276/468 atomic regions from SNP 82562 to 83162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,368 DEBUG Processing 99/642 atomic regions from SNP 29441 to 30041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,412 DEBUG Processing 358/885 atomic regions from SNP 107377 to 107977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,438 DEBUG Processing 337/848 atomic regions from SNP 100803 to 101403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,482 DEBUG Processing 190/1125 atomic regions from SNP 56812 to 57412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,485 DEBUG Processing 277/468 atomic regions from SNP 82862 to 83462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,511 DEBUG Processing 194/1013 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,612 DEBUG Processing 100/642 atomic regions from SNP 29741 to 30341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,648 DEBUG Processing 359/885 atomic regions from SNP 107677 to 108277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,671 DEBUG Processing 338/848 atomic regions from SNP 101103 to 101703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,715 DEBUG Processing 278/468 atomic regions from SNP 83162 to 83762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,788 DEBUG Processing 191/1125 atomic regions from SNP 57112 to 57712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,803 DEBUG Processing 195/1013 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,878 DEBUG Processing 101/642 atomic regions from SNP 30041 to 30641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,888 DEBUG Processing 360/885 atomic regions from SNP 107977 to 108577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,903 DEBUG Processing 339/848 atomic regions from SNP 101403 to 102003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,949 DEBUG Processing 279/468 atomic regions from SNP 83462 to 84062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,080 DEBUG Processing 196/1013 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,089 DEBUG Processing 192/1125 atomic regions from SNP 57412 to 58012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,135 DEBUG Processing 361/885 atomic regions from SNP 108277 to 108877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,141 DEBUG Processing 102/642 atomic regions from SNP 30341 to 30941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,147 DEBUG Processing 340/848 atomic regions from SNP 101703 to 102303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,175 DEBUG Processing 280/468 atomic regions from SNP 83762 to 84362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,362 DEBUG Processing 197/1013 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,380 DEBUG Processing 193/1125 atomic regions from SNP 57712 to 58312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,391 DEBUG Processing 362/885 atomic regions from SNP 108577 to 109177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,401 DEBUG Processing 341/848 atomic regions from SNP 102003 to 102603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,405 DEBUG Processing 103/642 atomic regions from SNP 30641 to 31241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,410 DEBUG Processing 281/468 atomic regions from SNP 84062 to 84662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,635 DEBUG Processing 198/1013 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,646 DEBUG Processing 104/642 atomic regions from SNP 30941 to 31541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,647 DEBUG Processing 363/885 atomic regions from SNP 108877 to 109477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,650 DEBUG Processing 282/468 atomic regions from SNP 84362 to 84962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,665 DEBUG Processing 342/848 atomic regions from SNP 102303 to 102903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,672 DEBUG Processing 194/1125 atomic regions from SNP 58012 to 58612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,882 DEBUG Processing 283/468 atomic regions from SNP 84662 to 85262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,883 DEBUG Processing 105/642 atomic regions from SNP 31241 to 31841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,902 DEBUG Processing 199/1013 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,911 DEBUG Processing 364/885 atomic regions from SNP 109177 to 109777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,916 DEBUG Processing 343/848 atomic regions from SNP 102603 to 103203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,983 DEBUG Processing 195/1125 atomic regions from SNP 58312 to 58912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,119 DEBUG Processing 284/468 atomic regions from SNP 84962 to 85562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,120 DEBUG Processing 106/642 atomic regions from SNP 31541 to 32141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,154 DEBUG Processing 344/848 atomic regions from SNP 102903 to 103503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,172 DEBUG Processing 200/1013 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,172 DEBUG Processing 365/885 atomic regions from SNP 109477 to 110077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,282 DEBUG Processing 196/1125 atomic regions from SNP 58612 to 59212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,358 DEBUG Processing 285/468 atomic regions from SNP 85262 to 85862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,365 DEBUG Processing 107/642 atomic regions from SNP 31841 to 32441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,387 DEBUG Processing 345/848 atomic regions from SNP 103203 to 103803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,439 DEBUG Processing 366/885 atomic regions from SNP 109777 to 110377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,443 DEBUG Processing 201/1013 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,567 DEBUG Processing 197/1125 atomic regions from SNP 58912 to 59512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,597 DEBUG Processing 286/468 atomic regions from SNP 85562 to 86162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,631 DEBUG Processing 346/848 atomic regions from SNP 103503 to 104103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,635 DEBUG Processing 108/642 atomic regions from SNP 32141 to 32741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,689 DEBUG Processing 367/885 atomic regions from SNP 110077 to 110677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,714 DEBUG Processing 202/1013 atomic regions from SNP 60501 to 61102 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,831 DEBUG Processing 287/468 atomic regions from SNP 85862 to 86462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,871 DEBUG Processing 198/1125 atomic regions from SNP 59212 to 59812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,893 DEBUG Processing 109/642 atomic regions from SNP 32441 to 33041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,895 DEBUG Processing 347/848 atomic regions from SNP 103803 to 104403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,937 DEBUG Processing 368/885 atomic regions from SNP 110377 to 110977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,985 DEBUG Processing 203/1013 atomic regions from SNP 60802 to 61403 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,061 DEBUG Processing 288/468 atomic regions from SNP 86162 to 86762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,133 DEBUG Processing 110/642 atomic regions from SNP 32741 to 33341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,165 DEBUG Processing 348/848 atomic regions from SNP 104103 to 104703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,175 DEBUG Processing 199/1125 atomic regions from SNP 59512 to 60112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,189 DEBUG Processing 369/885 atomic regions from SNP 110677 to 111277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,266 DEBUG Processing 204/1013 atomic regions from SNP 61103 to 61704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,298 DEBUG Processing 289/468 atomic regions from SNP 86462 to 87062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,368 DEBUG Processing 111/642 atomic regions from SNP 33041 to 33641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,438 DEBUG Processing 349/848 atomic regions from SNP 104403 to 105003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,442 DEBUG Processing 370/885 atomic regions from SNP 110977 to 111577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,477 DEBUG Processing 200/1125 atomic regions from SNP 59812 to 60412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,537 DEBUG Processing 290/468 atomic regions from SNP 86762 to 87362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,557 DEBUG Processing 205/1013 atomic regions from SNP 61404 to 62005 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,613 DEBUG Processing 112/642 atomic regions from SNP 33341 to 33941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,693 DEBUG Processing 371/885 atomic regions from SNP 111277 to 111877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,716 DEBUG Processing 350/848 atomic regions from SNP 104703 to 105303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,768 DEBUG Processing 201/1125 atomic regions from SNP 60112 to 60712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,774 DEBUG Processing 291/468 atomic regions from SNP 87062 to 87662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,841 DEBUG Processing 206/1013 atomic regions from SNP 61705 to 62306 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,860 DEBUG Processing 113/642 atomic regions from SNP 33641 to 34241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,937 DEBUG Processing 372/885 atomic regions from SNP 111577 to 112177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,965 DEBUG Processing 351/848 atomic regions from SNP 105003 to 105603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,004 DEBUG Processing 292/468 atomic regions from SNP 87362 to 87962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,059 DEBUG Processing 202/1125 atomic regions from SNP 60412 to 61012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,110 DEBUG Processing 114/642 atomic regions from SNP 33941 to 34541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,144 DEBUG Processing 207/1013 atomic regions from SNP 62006 to 62607 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,181 DEBUG Processing 373/885 atomic regions from SNP 111877 to 112477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,203 DEBUG Processing 352/848 atomic regions from SNP 105303 to 105903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,231 DEBUG Processing 293/468 atomic regions from SNP 87662 to 88262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,349 DEBUG Processing 203/1125 atomic regions from SNP 60712 to 61312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,356 DEBUG Processing 115/642 atomic regions from SNP 34241 to 34841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,423 DEBUG Processing 208/1013 atomic regions from SNP 62307 to 62908 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,435 DEBUG Processing 374/885 atomic regions from SNP 112177 to 112777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,446 DEBUG Processing 353/848 atomic regions from SNP 105603 to 106203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,461 DEBUG Processing 294/468 atomic regions from SNP 87962 to 88562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,597 DEBUG Processing 116/642 atomic regions from SNP 34541 to 35141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,660 DEBUG Processing 204/1125 atomic regions from SNP 61012 to 61612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,694 DEBUG Processing 375/885 atomic regions from SNP 112477 to 113077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,695 DEBUG Processing 209/1013 atomic regions from SNP 62608 to 63209 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,696 DEBUG Processing 354/848 atomic regions from SNP 105903 to 106503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,698 DEBUG Processing 295/468 atomic regions from SNP 88262 to 88862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,834 DEBUG Processing 117/642 atomic regions from SNP 34841 to 35441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,933 DEBUG Processing 296/468 atomic regions from SNP 88562 to 89162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,949 DEBUG Processing 376/885 atomic regions from SNP 112777 to 113377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,952 DEBUG Processing 355/848 atomic regions from SNP 106203 to 106803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,968 DEBUG Processing 205/1125 atomic regions from SNP 61312 to 61912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,970 DEBUG Processing 210/1013 atomic regions from SNP 62909 to 63510 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,073 DEBUG Processing 118/642 atomic regions from SNP 35141 to 35741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,167 DEBUG Processing 297/468 atomic regions from SNP 88862 to 89462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,201 DEBUG Processing 377/885 atomic regions from SNP 113077 to 113677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,201 DEBUG Processing 356/848 atomic regions from SNP 106503 to 107103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,259 DEBUG Processing 206/1125 atomic regions from SNP 61612 to 62212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,262 DEBUG Processing 211/1013 atomic regions from SNP 63210 to 63811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,317 DEBUG Processing 119/642 atomic regions from SNP 35441 to 36041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,404 DEBUG Processing 298/468 atomic regions from SNP 89162 to 89762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,440 DEBUG Processing 357/848 atomic regions from SNP 106803 to 107403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,444 DEBUG Processing 378/885 atomic regions from SNP 113377 to 113977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,558 DEBUG Processing 212/1013 atomic regions from SNP 63511 to 64112 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,559 DEBUG Processing 207/1125 atomic regions from SNP 61912 to 62512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,561 DEBUG Processing 120/642 atomic regions from SNP 35741 to 36341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,643 DEBUG Processing 299/468 atomic regions from SNP 89462 to 90062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,681 DEBUG Processing 358/848 atomic regions from SNP 107103 to 107703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,699 DEBUG Processing 379/885 atomic regions from SNP 113677 to 114277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,821 DEBUG Processing 121/642 atomic regions from SNP 36041 to 36641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,860 DEBUG Processing 213/1013 atomic regions from SNP 63812 to 64413 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,882 DEBUG Processing 208/1125 atomic regions from SNP 62212 to 62812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,884 DEBUG Processing 300/468 atomic regions from SNP 89762 to 90362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,934 DEBUG Processing 359/848 atomic regions from SNP 107403 to 108003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,953 DEBUG Processing 380/885 atomic regions from SNP 113977 to 114577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,063 DEBUG Processing 122/642 atomic regions from SNP 36341 to 36941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,128 DEBUG Processing 301/468 atomic regions from SNP 90062 to 90662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,166 DEBUG Processing 214/1013 atomic regions from SNP 64113 to 64714 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,192 DEBUG Processing 209/1125 atomic regions from SNP 62512 to 63112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,200 DEBUG Processing 360/848 atomic regions from SNP 107703 to 108303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,214 DEBUG Processing 381/885 atomic regions from SNP 114277 to 114877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,306 DEBUG Processing 123/642 atomic regions from SNP 36641 to 37241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,390 DEBUG Processing 302/468 atomic regions from SNP 90362 to 90962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,453 DEBUG Processing 215/1013 atomic regions from SNP 64414 to 65015 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,460 DEBUG Processing 361/848 atomic regions from SNP 108003 to 108603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,478 DEBUG Processing 382/885 atomic regions from SNP 114577 to 115177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,484 DEBUG Processing 210/1125 atomic regions from SNP 62812 to 63412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,547 DEBUG Processing 124/642 atomic regions from SNP 36941 to 37541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,633 DEBUG Processing 303/468 atomic regions from SNP 90662 to 91262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,707 DEBUG Processing 362/848 atomic regions from SNP 108303 to 108903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,714 DEBUG Processing 216/1013 atomic regions from SNP 64715 to 65316 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,735 DEBUG Processing 383/885 atomic regions from SNP 114877 to 115477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,772 DEBUG Processing 211/1125 atomic regions from SNP 63112 to 63712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,783 DEBUG Processing 125/642 atomic regions from SNP 37241 to 37841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,872 DEBUG Processing 304/468 atomic regions from SNP 90962 to 91562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,966 DEBUG Processing 363/848 atomic regions from SNP 108603 to 109203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,974 DEBUG Processing 217/1013 atomic regions from SNP 65016 to 65617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,982 DEBUG Processing 384/885 atomic regions from SNP 115177 to 115777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,019 DEBUG Processing 126/642 atomic regions from SNP 37541 to 38141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,055 DEBUG Processing 212/1125 atomic regions from SNP 63412 to 64012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,106 DEBUG Processing 305/468 atomic regions from SNP 91262 to 91862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,208 DEBUG Processing 364/848 atomic regions from SNP 108903 to 109503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,223 DEBUG Processing 385/885 atomic regions from SNP 115477 to 116077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,237 DEBUG Processing 218/1013 atomic regions from SNP 65317 to 65918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,255 DEBUG Processing 127/642 atomic regions from SNP 37841 to 38441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,339 DEBUG Processing 213/1125 atomic regions from SNP 63712 to 64312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,347 DEBUG Processing 306/468 atomic regions from SNP 91562 to 92162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,442 DEBUG Processing 365/848 atomic regions from SNP 109203 to 109803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,459 DEBUG Processing 386/885 atomic regions from SNP 115777 to 116377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,488 DEBUG Processing 128/642 atomic regions from SNP 38141 to 38741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,501 DEBUG Processing 219/1013 atomic regions from SNP 65618 to 66219 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,586 DEBUG Processing 307/468 atomic regions from SNP 91862 to 92462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,621 DEBUG Processing 214/1125 atomic regions from SNP 64012 to 64612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,688 DEBUG Processing 366/848 atomic regions from SNP 109503 to 110103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,707 DEBUG Processing 387/885 atomic regions from SNP 116077 to 116677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,716 DEBUG Processing 129/642 atomic regions from SNP 38441 to 39041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,758 DEBUG Processing 220/1013 atomic regions from SNP 65919 to 66520 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,820 DEBUG Processing 308/468 atomic regions from SNP 92162 to 92762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,894 DEBUG Processing 215/1125 atomic regions from SNP 64312 to 64912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,934 DEBUG Processing 367/848 atomic regions from SNP 109803 to 110403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,944 DEBUG Processing 130/642 atomic regions from SNP 38741 to 39341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,958 DEBUG Processing 388/885 atomic regions from SNP 116377 to 116977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,016 DEBUG Processing 221/1013 atomic regions from SNP 66220 to 66821 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,050 DEBUG Processing 309/468 atomic regions from SNP 92462 to 93062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,170 DEBUG Processing 216/1125 atomic regions from SNP 64612 to 65212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,182 DEBUG Processing 131/642 atomic regions from SNP 39041 to 39641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,183 DEBUG Processing 368/848 atomic regions from SNP 110103 to 110703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,213 DEBUG Processing 389/885 atomic regions from SNP 116677 to 117277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,279 DEBUG Processing 310/468 atomic regions from SNP 92762 to 93362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,280 DEBUG Processing 222/1013 atomic regions from SNP 66521 to 67122 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,415 DEBUG Processing 132/642 atomic regions from SNP 39341 to 39941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,427 DEBUG Processing 369/848 atomic regions from SNP 110403 to 111003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,445 DEBUG Processing 217/1125 atomic regions from SNP 64912 to 65512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,468 DEBUG Processing 390/885 atomic regions from SNP 116977 to 117577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,524 DEBUG Processing 311/468 atomic regions from SNP 93062 to 93662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,549 DEBUG Processing 223/1013 atomic regions from SNP 66822 to 67423 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,638 DEBUG Processing 133/642 atomic regions from SNP 39641 to 40241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,659 DEBUG Processing 370/848 atomic regions from SNP 110703 to 111303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,718 DEBUG Processing 391/885 atomic regions from SNP 117277 to 117877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,722 DEBUG Processing 218/1125 atomic regions from SNP 65212 to 65812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,780 DEBUG Processing 312/468 atomic regions from SNP 93362 to 93962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,822 DEBUG Processing 224/1013 atomic regions from SNP 67123 to 67724 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,866 DEBUG Processing 134/642 atomic regions from SNP 39941 to 40541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,893 DEBUG Processing 371/848 atomic regions from SNP 111003 to 111603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,965 DEBUG Processing 392/885 atomic regions from SNP 117577 to 118177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,998 DEBUG Processing 219/1125 atomic regions from SNP 65512 to 66112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,045 DEBUG Processing 313/468 atomic regions from SNP 93662 to 94262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,099 DEBUG Processing 225/1013 atomic regions from SNP 67424 to 68025 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,103 DEBUG Processing 135/642 atomic regions from SNP 40241 to 40841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,134 DEBUG Processing 372/848 atomic regions from SNP 111303 to 111903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,208 DEBUG Processing 393/885 atomic regions from SNP 117877 to 118477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,274 DEBUG Processing 220/1125 atomic regions from SNP 65812 to 66412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,317 DEBUG Processing 314/468 atomic regions from SNP 93962 to 94562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,346 DEBUG Processing 136/642 atomic regions from SNP 40541 to 41141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,380 DEBUG Processing 373/848 atomic regions from SNP 111603 to 112203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,381 DEBUG Processing 226/1013 atomic regions from SNP 67725 to 68326 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,456 DEBUG Processing 394/885 atomic regions from SNP 118177 to 118777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,549 DEBUG Processing 221/1125 atomic regions from SNP 66112 to 66712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,582 DEBUG Processing 315/468 atomic regions from SNP 94262 to 94862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,590 DEBUG Processing 137/642 atomic regions from SNP 40841 to 41441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,625 DEBUG Processing 374/848 atomic regions from SNP 111903 to 112503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,654 DEBUG Processing 227/1013 atomic regions from SNP 68026 to 68627 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,711 DEBUG Processing 395/885 atomic regions from SNP 118477 to 119077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,836 DEBUG Processing 222/1125 atomic regions from SNP 66412 to 67012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,842 DEBUG Processing 138/642 atomic regions from SNP 41141 to 41741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,843 DEBUG Processing 316/468 atomic regions from SNP 94562 to 95162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,866 DEBUG Processing 375/848 atomic regions from SNP 112203 to 112803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,922 DEBUG Processing 228/1013 atomic regions from SNP 68327 to 68928 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,974 DEBUG Processing 396/885 atomic regions from SNP 118777 to 119377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,082 DEBUG Processing 139/642 atomic regions from SNP 41441 to 42041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,098 DEBUG Processing 317/468 atomic regions from SNP 94862 to 95462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,103 DEBUG Processing 376/848 atomic regions from SNP 112503 to 113103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,109 DEBUG Processing 223/1125 atomic regions from SNP 66712 to 67312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,186 DEBUG Processing 229/1013 atomic regions from SNP 68628 to 69229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,220 DEBUG Processing 397/885 atomic regions from SNP 119077 to 119677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,316 DEBUG Processing 140/642 atomic regions from SNP 41741 to 42341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,346 DEBUG Processing 377/848 atomic regions from SNP 112803 to 113403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,357 DEBUG Processing 318/468 atomic regions from SNP 95162 to 95762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,386 DEBUG Processing 224/1125 atomic regions from SNP 67012 to 67612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,448 DEBUG Processing 230/1013 atomic regions from SNP 68929 to 69529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,464 DEBUG Processing 398/885 atomic regions from SNP 119377 to 119977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,549 DEBUG Processing 141/642 atomic regions from SNP 42041 to 42641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,587 DEBUG Processing 378/848 atomic regions from SNP 113103 to 113703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,593 DEBUG Processing 319/468 atomic regions from SNP 95462 to 96062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,672 DEBUG Processing 225/1125 atomic regions from SNP 67312 to 67912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,714 DEBUG Processing 399/885 atomic regions from SNP 119677 to 120277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,715 DEBUG Processing 231/1013 atomic regions from SNP 69229 to 69829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,779 DEBUG Processing 142/642 atomic regions from SNP 42341 to 42941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,820 DEBUG Processing 379/848 atomic regions from SNP 113403 to 114003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,821 DEBUG Processing 320/468 atomic regions from SNP 95762 to 96362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,960 DEBUG Processing 226/1125 atomic regions from SNP 67612 to 68212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,971 DEBUG Processing 400/885 atomic regions from SNP 119977 to 120577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,003 DEBUG Processing 232/1013 atomic regions from SNP 69529 to 70129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,031 DEBUG Processing 143/642 atomic regions from SNP 42641 to 43241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,055 DEBUG Processing 380/848 atomic regions from SNP 113703 to 114303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,062 DEBUG Processing 321/468 atomic regions from SNP 96062 to 96662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,229 DEBUG Processing 401/885 atomic regions from SNP 120277 to 120877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,246 DEBUG Processing 227/1125 atomic regions from SNP 67912 to 68512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,281 DEBUG Processing 233/1013 atomic regions from SNP 69829 to 70429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,285 DEBUG Processing 144/642 atomic regions from SNP 42941 to 43541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,300 DEBUG Processing 381/848 atomic regions from SNP 114003 to 114603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,307 DEBUG Processing 322/468 atomic regions from SNP 96362 to 96962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,479 DEBUG Processing 402/885 atomic regions from SNP 120577 to 121177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,531 DEBUG Processing 228/1125 atomic regions from SNP 68212 to 68812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,534 DEBUG Processing 145/642 atomic regions from SNP 43241 to 43841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,552 DEBUG Processing 382/848 atomic regions from SNP 114303 to 114903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,559 DEBUG Processing 234/1013 atomic regions from SNP 70129 to 70729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,584 DEBUG Processing 323/468 atomic regions from SNP 96662 to 97262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,720 DEBUG Processing 403/885 atomic regions from SNP 120877 to 121477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,774 DEBUG Processing 146/642 atomic regions from SNP 43541 to 44141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,805 DEBUG Processing 383/848 atomic regions from SNP 114603 to 115203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,814 DEBUG Processing 229/1125 atomic regions from SNP 68512 to 69112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,832 DEBUG Processing 235/1013 atomic regions from SNP 70429 to 71029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,842 DEBUG Processing 324/468 atomic regions from SNP 96962 to 97562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,961 DEBUG Processing 404/885 atomic regions from SNP 121177 to 121777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,011 DEBUG Processing 147/642 atomic regions from SNP 43841 to 44441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,054 DEBUG Processing 384/848 atomic regions from SNP 114903 to 115503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,083 DEBUG Processing 325/468 atomic regions from SNP 97262 to 97862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,107 DEBUG Processing 236/1013 atomic regions from SNP 70729 to 71329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,115 DEBUG Processing 230/1125 atomic regions from SNP 68812 to 69412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,201 DEBUG Processing 405/885 atomic regions from SNP 121477 to 122077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,254 DEBUG Processing 148/642 atomic regions from SNP 44141 to 44741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,303 DEBUG Processing 385/848 atomic regions from SNP 115203 to 115803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,321 DEBUG Processing 326/468 atomic regions from SNP 97562 to 98162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,379 DEBUG Processing 237/1013 atomic regions from SNP 71029 to 71629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,425 DEBUG Processing 231/1125 atomic regions from SNP 69112 to 69712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,441 DEBUG Processing 406/885 atomic regions from SNP 121777 to 122377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,493 DEBUG Processing 149/642 atomic regions from SNP 44441 to 45041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,549 DEBUG Processing 386/848 atomic regions from SNP 115503 to 116103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,558 DEBUG Processing 327/468 atomic regions from SNP 97862 to 98462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,651 DEBUG Processing 238/1013 atomic regions from SNP 71329 to 71929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,690 DEBUG Processing 407/885 atomic regions from SNP 122077 to 122677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,704 DEBUG Processing 232/1125 atomic regions from SNP 69412 to 70012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,731 DEBUG Processing 150/642 atomic regions from SNP 44741 to 45341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,793 DEBUG Processing 387/848 atomic regions from SNP 115803 to 116403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,799 DEBUG Processing 328/468 atomic regions from SNP 98162 to 98762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,921 DEBUG Processing 239/1013 atomic regions from SNP 71629 to 72229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,938 DEBUG Processing 408/885 atomic regions from SNP 122377 to 122977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,965 DEBUG Processing 151/642 atomic regions from SNP 45041 to 45641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,981 DEBUG Processing 233/1125 atomic regions from SNP 69712 to 70312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,033 DEBUG Processing 388/848 atomic regions from SNP 116103 to 116703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,036 DEBUG Processing 329/468 atomic regions from SNP 98462 to 99062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,189 DEBUG Processing 409/885 atomic regions from SNP 122677 to 123277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,200 DEBUG Processing 240/1013 atomic regions from SNP 71929 to 72529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,206 DEBUG Processing 152/642 atomic regions from SNP 45341 to 45941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,258 DEBUG Processing 234/1125 atomic regions from SNP 70012 to 70612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,264 DEBUG Processing 330/468 atomic regions from SNP 98762 to 99362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,268 DEBUG Processing 389/848 atomic regions from SNP 116403 to 117003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,445 DEBUG Processing 410/885 atomic regions from SNP 122977 to 123577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,453 DEBUG Processing 153/642 atomic regions from SNP 45641 to 46241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,488 DEBUG Processing 241/1013 atomic regions from SNP 72229 to 72829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,496 DEBUG Processing 331/468 atomic regions from SNP 99062 to 99662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,517 DEBUG Processing 390/848 atomic regions from SNP 116703 to 117303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,545 DEBUG Processing 235/1125 atomic regions from SNP 70312 to 70912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,702 DEBUG Processing 411/885 atomic regions from SNP 123277 to 123877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,710 DEBUG Processing 154/642 atomic regions from SNP 45941 to 46541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,742 DEBUG Processing 332/468 atomic regions from SNP 99362 to 99962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,766 DEBUG Processing 242/1013 atomic regions from SNP 72529 to 73129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,788 DEBUG Processing 391/848 atomic regions from SNP 117003 to 117603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,825 DEBUG Processing 236/1125 atomic regions from SNP 70612 to 71212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,954 DEBUG Processing 412/885 atomic regions from SNP 123577 to 124177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,955 DEBUG Processing 155/642 atomic regions from SNP 46241 to 46841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,988 DEBUG Processing 333/468 atomic regions from SNP 99662 to 100262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,050 DEBUG Processing 243/1013 atomic regions from SNP 72829 to 73429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,052 DEBUG Processing 392/848 atomic regions from SNP 117303 to 117903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,127 DEBUG Processing 237/1125 atomic regions from SNP 70912 to 71512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,196 DEBUG Processing 156/642 atomic regions from SNP 46541 to 47141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,201 DEBUG Processing 413/885 atomic regions from SNP 123877 to 124477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,231 DEBUG Processing 334/468 atomic regions from SNP 99962 to 100562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,314 DEBUG Processing 393/848 atomic regions from SNP 117603 to 118203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,323 DEBUG Processing 244/1013 atomic regions from SNP 73129 to 73729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,408 DEBUG Processing 238/1125 atomic regions from SNP 71212 to 71812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,426 DEBUG Processing 157/642 atomic regions from SNP 46841 to 47441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,450 DEBUG Processing 414/885 atomic regions from SNP 124177 to 124777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,465 DEBUG Processing 335/468 atomic regions from SNP 100262 to 100862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,570 DEBUG Processing 394/848 atomic regions from SNP 117903 to 118503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,599 DEBUG Processing 245/1013 atomic regions from SNP 73429 to 74029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,668 DEBUG Processing 158/642 atomic regions from SNP 47141 to 47741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,699 DEBUG Processing 239/1125 atomic regions from SNP 71512 to 72112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,700 DEBUG Processing 336/468 atomic regions from SNP 100562 to 101162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,705 DEBUG Processing 415/885 atomic regions from SNP 124477 to 125077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,817 DEBUG Processing 395/848 atomic regions from SNP 118203 to 118803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,862 DEBUG Processing 246/1013 atomic regions from SNP 73729 to 74329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,906 DEBUG Processing 159/642 atomic regions from SNP 47441 to 48041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,936 DEBUG Processing 337/468 atomic regions from SNP 100862 to 101462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,959 DEBUG Processing 416/885 atomic regions from SNP 124777 to 125377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,990 DEBUG Processing 240/1125 atomic regions from SNP 71812 to 72412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,048 DEBUG Processing 396/848 atomic regions from SNP 118503 to 119103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,130 DEBUG Processing 247/1013 atomic regions from SNP 74029 to 74629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,144 DEBUG Processing 160/642 atomic regions from SNP 47741 to 48341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,174 DEBUG Processing 338/468 atomic regions from SNP 101162 to 101762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,212 DEBUG Processing 417/885 atomic regions from SNP 125077 to 125677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,278 DEBUG Processing 241/1125 atomic regions from SNP 72112 to 72712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,292 DEBUG Processing 397/848 atomic regions from SNP 118803 to 119403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,383 DEBUG Processing 161/642 atomic regions from SNP 48041 to 48641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,407 DEBUG Processing 248/1013 atomic regions from SNP 74329 to 74929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,411 DEBUG Processing 339/468 atomic regions from SNP 101462 to 102062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,456 DEBUG Processing 418/885 atomic regions from SNP 125377 to 125977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,567 DEBUG Processing 242/1125 atomic regions from SNP 72412 to 73012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,569 DEBUG Processing 398/848 atomic regions from SNP 119103 to 119703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,620 DEBUG Processing 162/642 atomic regions from SNP 48341 to 48941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,665 DEBUG Processing 340/468 atomic regions from SNP 101762 to 102362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,696 DEBUG Processing 419/885 atomic regions from SNP 125677 to 126277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,697 DEBUG Processing 249/1013 atomic regions from SNP 74629 to 75229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,817 DEBUG Processing 399/848 atomic regions from SNP 119403 to 120003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,850 DEBUG Processing 243/1125 atomic regions from SNP 72712 to 73312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,858 DEBUG Processing 163/642 atomic regions from SNP 48641 to 49241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,933 DEBUG Processing 341/468 atomic regions from SNP 102062 to 102662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,942 DEBUG Processing 420/885 atomic regions from SNP 125977 to 126577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,976 DEBUG Processing 250/1013 atomic regions from SNP 74929 to 75529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,062 DEBUG Processing 400/848 atomic regions from SNP 119703 to 120303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,092 DEBUG Processing 164/642 atomic regions from SNP 48941 to 49541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,135 DEBUG Processing 244/1125 atomic regions from SNP 73012 to 73612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,190 DEBUG Processing 342/468 atomic regions from SNP 102362 to 102962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,192 DEBUG Processing 421/885 atomic regions from SNP 126277 to 126877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,254 DEBUG Processing 251/1013 atomic regions from SNP 75229 to 75829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,304 DEBUG Processing 401/848 atomic regions from SNP 120003 to 120603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,325 DEBUG Processing 165/642 atomic regions from SNP 49241 to 49841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,408 DEBUG Processing 245/1125 atomic regions from SNP 73312 to 73912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,447 DEBUG Processing 343/468 atomic regions from SNP 102662 to 103262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,459 DEBUG Processing 422/885 atomic regions from SNP 126577 to 127177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,534 DEBUG Processing 252/1013 atomic regions from SNP 75529 to 76129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,548 DEBUG Processing 402/848 atomic regions from SNP 120303 to 120903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,565 DEBUG Processing 166/642 atomic regions from SNP 49541 to 50141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,687 DEBUG Processing 246/1125 atomic regions from SNP 73612 to 74212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,692 DEBUG Processing 344/468 atomic regions from SNP 102962 to 103562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,740 DEBUG Processing 423/885 atomic regions from SNP 126877 to 127477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,790 DEBUG Processing 403/848 atomic regions from SNP 120603 to 121203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,807 DEBUG Processing 167/642 atomic regions from SNP 49841 to 50441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,811 DEBUG Processing 253/1013 atomic regions from SNP 75829 to 76429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,920 DEBUG Processing 345/468 atomic regions from SNP 103262 to 103862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,959 DEBUG Processing 247/1125 atomic regions from SNP 73912 to 74512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,004 DEBUG Processing 424/885 atomic regions from SNP 127177 to 127777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,032 DEBUG Processing 404/848 atomic regions from SNP 120903 to 121503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,054 DEBUG Processing 168/642 atomic regions from SNP 50141 to 50741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,086 DEBUG Processing 254/1013 atomic regions from SNP 76129 to 76729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,149 DEBUG Processing 346/468 atomic regions from SNP 103562 to 104162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,240 DEBUG Processing 248/1125 atomic regions from SNP 74212 to 74812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,261 DEBUG Processing 425/885 atomic regions from SNP 127477 to 128077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,272 DEBUG Processing 405/848 atomic regions from SNP 121203 to 121803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,295 DEBUG Processing 169/642 atomic regions from SNP 50441 to 51041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,359 DEBUG Processing 255/1013 atomic regions from SNP 76429 to 77029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,385 DEBUG Processing 347/468 atomic regions from SNP 103862 to 104462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,510 DEBUG Processing 426/885 atomic regions from SNP 127777 to 128377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,515 DEBUG Processing 406/848 atomic regions from SNP 121503 to 122103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,521 DEBUG Processing 249/1125 atomic regions from SNP 74512 to 75112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,533 DEBUG Processing 170/642 atomic regions from SNP 50741 to 51341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,619 DEBUG Processing 348/468 atomic regions from SNP 104162 to 104762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,627 DEBUG Processing 256/1013 atomic regions from SNP 76729 to 77329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,762 DEBUG Processing 427/885 atomic regions from SNP 128077 to 128677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,762 DEBUG Processing 407/848 atomic regions from SNP 121803 to 122403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,768 DEBUG Processing 171/642 atomic regions from SNP 51041 to 51641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,807 DEBUG Processing 250/1125 atomic regions from SNP 74812 to 75412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,862 DEBUG Processing 349/468 atomic regions from SNP 104462 to 105062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,896 DEBUG Processing 257/1013 atomic regions from SNP 77029 to 77629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,003 DEBUG Processing 172/642 atomic regions from SNP 51341 to 51941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,006 DEBUG Processing 408/848 atomic regions from SNP 122103 to 122703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,018 DEBUG Processing 428/885 atomic regions from SNP 128377 to 128977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,086 DEBUG Processing 251/1125 atomic regions from SNP 75112 to 75712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,106 DEBUG Processing 350/468 atomic regions from SNP 104762 to 105362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,159 DEBUG Processing 258/1013 atomic regions from SNP 77329 to 77929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,241 DEBUG Processing 173/642 atomic regions from SNP 51641 to 52241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,253 DEBUG Processing 409/848 atomic regions from SNP 122403 to 123003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,268 DEBUG Processing 429/885 atomic regions from SNP 128677 to 129277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,345 DEBUG Processing 351/468 atomic regions from SNP 105062 to 105662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,361 DEBUG Processing 252/1125 atomic regions from SNP 75412 to 76012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,427 DEBUG Processing 259/1013 atomic regions from SNP 77629 to 78229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,482 DEBUG Processing 174/642 atomic regions from SNP 51941 to 52541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,496 DEBUG Processing 410/848 atomic regions from SNP 122703 to 123303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,517 DEBUG Processing 430/885 atomic regions from SNP 128977 to 129577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,571 DEBUG Processing 352/468 atomic regions from SNP 105362 to 105962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,636 DEBUG Processing 253/1125 atomic regions from SNP 75712 to 76312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,701 DEBUG Processing 260/1013 atomic regions from SNP 77929 to 78529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,725 DEBUG Processing 175/642 atomic regions from SNP 52241 to 52841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,743 DEBUG Processing 411/848 atomic regions from SNP 123003 to 123603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,765 DEBUG Processing 431/885 atomic regions from SNP 129277 to 129877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,817 DEBUG Processing 353/468 atomic regions from SNP 105662 to 106262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,911 DEBUG Processing 254/1125 atomic regions from SNP 76012 to 76612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,968 DEBUG Processing 176/642 atomic regions from SNP 52541 to 53141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,972 DEBUG Processing 261/1013 atomic regions from SNP 78229 to 78829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,980 DEBUG Processing 412/848 atomic regions from SNP 123303 to 123903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,009 DEBUG Processing 432/885 atomic regions from SNP 129577 to 130177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,081 DEBUG Processing 354/468 atomic regions from SNP 105962 to 106562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,186 DEBUG Processing 255/1125 atomic regions from SNP 76312 to 76912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,204 DEBUG Processing 177/642 atomic regions from SNP 52841 to 53441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,218 DEBUG Processing 413/848 atomic regions from SNP 123603 to 124203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,239 DEBUG Processing 262/1013 atomic regions from SNP 78529 to 79129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,253 DEBUG Processing 433/885 atomic regions from SNP 129877 to 130477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,339 DEBUG Processing 355/468 atomic regions from SNP 106262 to 106862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,434 DEBUG Processing 178/642 atomic regions from SNP 53141 to 53741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,458 DEBUG Processing 414/848 atomic regions from SNP 123903 to 124503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,464 DEBUG Processing 256/1125 atomic regions from SNP 76612 to 77212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,499 DEBUG Processing 434/885 atomic regions from SNP 130177 to 130777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,503 DEBUG Processing 263/1013 atomic regions from SNP 78829 to 79429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,591 DEBUG Processing 356/468 atomic regions from SNP 106562 to 107162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,670 DEBUG Processing 179/642 atomic regions from SNP 53441 to 54041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,713 DEBUG Processing 415/848 atomic regions from SNP 124203 to 124803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,746 DEBUG Processing 257/1125 atomic regions from SNP 76912 to 77512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,753 DEBUG Processing 435/885 atomic regions from SNP 130477 to 131077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,761 DEBUG Processing 264/1013 atomic regions from SNP 79129 to 79729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,837 DEBUG Processing 357/468 atomic regions from SNP 106862 to 107462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,904 DEBUG Processing 180/642 atomic regions from SNP 53741 to 54341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,981 DEBUG Processing 416/848 atomic regions from SNP 124503 to 125103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,004 DEBUG Processing 436/885 atomic regions from SNP 130777 to 131377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,022 DEBUG Processing 265/1013 atomic regions from SNP 79429 to 80029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,028 DEBUG Processing 258/1125 atomic regions from SNP 77212 to 77812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,087 DEBUG Processing 358/468 atomic regions from SNP 107162 to 107762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,143 DEBUG Processing 181/642 atomic regions from SNP 54041 to 54641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,251 DEBUG Processing 417/848 atomic regions from SNP 124803 to 125403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,255 DEBUG Processing 437/885 atomic regions from SNP 131077 to 131677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,284 DEBUG Processing 266/1013 atomic regions from SNP 79729 to 80329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,310 DEBUG Processing 259/1125 atomic regions from SNP 77512 to 78112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,359 DEBUG Processing 359/468 atomic regions from SNP 107462 to 108062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,383 DEBUG Processing 182/642 atomic regions from SNP 54341 to 54941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,503 DEBUG Processing 438/885 atomic regions from SNP 131377 to 131977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,518 DEBUG Processing 418/848 atomic regions from SNP 125103 to 125703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,542 DEBUG Processing 267/1013 atomic regions from SNP 80029 to 80629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,589 DEBUG Processing 260/1125 atomic regions from SNP 77812 to 78412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,621 DEBUG Processing 183/642 atomic regions from SNP 54641 to 55241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,624 DEBUG Processing 360/468 atomic regions from SNP 107762 to 108362 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,751 DEBUG Processing 439/885 atomic regions from SNP 131677 to 132277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,761 DEBUG Processing 419/848 atomic regions from SNP 125403 to 126003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,809 DEBUG Processing 268/1013 atomic regions from SNP 80329 to 80929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,862 DEBUG Processing 184/642 atomic regions from SNP 54941 to 55541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,864 DEBUG Processing 261/1125 atomic regions from SNP 78112 to 78712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,867 DEBUG Processing 361/468 atomic regions from SNP 108062 to 108662 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,999 DEBUG Processing 440/885 atomic regions from SNP 131977 to 132577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,003 DEBUG Processing 420/848 atomic regions from SNP 125703 to 126303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,097 DEBUG Processing 269/1013 atomic regions from SNP 80629 to 81229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,112 DEBUG Processing 185/642 atomic regions from SNP 55241 to 55841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,120 DEBUG Processing 362/468 atomic regions from SNP 108362 to 108962 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,139 DEBUG Processing 262/1125 atomic regions from SNP 78412 to 79012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,239 DEBUG Processing 421/848 atomic regions from SNP 126003 to 126603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,240 DEBUG Processing 441/885 atomic regions from SNP 132277 to 132877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,357 DEBUG Processing 186/642 atomic regions from SNP 55541 to 56141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,370 DEBUG Processing 363/468 atomic regions from SNP 108662 to 109262 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,371 DEBUG Processing 270/1013 atomic regions from SNP 80929 to 81529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,414 DEBUG Processing 263/1125 atomic regions from SNP 78712 to 79312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,479 DEBUG Processing 422/848 atomic regions from SNP 126303 to 126903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,482 DEBUG Processing 442/885 atomic regions from SNP 132577 to 133177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,606 DEBUG Processing 187/642 atomic regions from SNP 55841 to 56441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,617 DEBUG Processing 364/468 atomic regions from SNP 108962 to 109562 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,649 DEBUG Processing 271/1013 atomic regions from SNP 81229 to 81829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,690 DEBUG Processing 264/1125 atomic regions from SNP 79012 to 79612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,721 DEBUG Processing 423/848 atomic regions from SNP 126603 to 127203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,727 DEBUG Processing 443/885 atomic regions from SNP 132877 to 133477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,851 DEBUG Processing 188/642 atomic regions from SNP 56141 to 56741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,862 DEBUG Processing 365/468 atomic regions from SNP 109262 to 109862 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,933 DEBUG Processing 272/1013 atomic regions from SNP 81529 to 82129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,970 DEBUG Processing 424/848 atomic regions from SNP 126903 to 127503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,973 DEBUG Processing 265/1125 atomic regions from SNP 79312 to 79912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,981 DEBUG Processing 444/885 atomic regions from SNP 133177 to 133777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,088 DEBUG Processing 189/642 atomic regions from SNP 56441 to 57041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,132 DEBUG Processing 366/468 atomic regions from SNP 109562 to 110162 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,208 DEBUG Processing 425/848 atomic regions from SNP 127203 to 127803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,209 DEBUG Processing 273/1013 atomic regions from SNP 81829 to 82429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,223 DEBUG Processing 445/885 atomic regions from SNP 133477 to 134077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,245 DEBUG Processing 266/1125 atomic regions from SNP 79612 to 80212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,312 DEBUG Processing 190/642 atomic regions from SNP 56741 to 57341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,396 DEBUG Processing 367/468 atomic regions from SNP 109862 to 110462 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,446 DEBUG Processing 426/848 atomic regions from SNP 127503 to 128103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,464 DEBUG Processing 446/885 atomic regions from SNP 133777 to 134377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,481 DEBUG Processing 274/1013 atomic regions from SNP 82129 to 82729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,519 DEBUG Processing 267/1125 atomic regions from SNP 79912 to 80512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,542 DEBUG Processing 191/642 atomic regions from SNP 57041 to 57641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,640 DEBUG Processing 368/468 atomic regions from SNP 110162 to 110762 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,684 DEBUG Processing 427/848 atomic regions from SNP 127803 to 128403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,711 DEBUG Processing 447/885 atomic regions from SNP 134077 to 134677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,751 DEBUG Processing 275/1013 atomic regions from SNP 82429 to 83029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,784 DEBUG Processing 192/642 atomic regions from SNP 57341 to 57941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,793 DEBUG Processing 268/1125 atomic regions from SNP 80212 to 80812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,871 DEBUG Processing 369/468 atomic regions from SNP 110462 to 111062 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,925 DEBUG Processing 428/848 atomic regions from SNP 128103 to 128703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,974 DEBUG Processing 448/885 atomic regions from SNP 134377 to 134977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,023 DEBUG Processing 276/1013 atomic regions from SNP 82729 to 83329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,029 DEBUG Processing 193/642 atomic regions from SNP 57641 to 58241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,068 DEBUG Processing 269/1125 atomic regions from SNP 80512 to 81112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,101 DEBUG Processing 370/468 atomic regions from SNP 110762 to 111362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,160 DEBUG Processing 429/848 atomic regions from SNP 128403 to 129003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,256 DEBUG Processing 449/885 atomic regions from SNP 134677 to 135277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,268 DEBUG Processing 194/642 atomic regions from SNP 57941 to 58541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,293 DEBUG Processing 277/1013 atomic regions from SNP 83029 to 83629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,341 DEBUG Processing 371/468 atomic regions from SNP 111062 to 111662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,342 DEBUG Processing 270/1125 atomic regions from SNP 80812 to 81412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,389 DEBUG Processing 430/848 atomic regions from SNP 128703 to 129303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,502 DEBUG Processing 195/642 atomic regions from SNP 58241 to 58841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,530 DEBUG Processing 450/885 atomic regions from SNP 134977 to 135577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,558 DEBUG Processing 278/1013 atomic regions from SNP 83329 to 83929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,573 DEBUG Processing 372/468 atomic regions from SNP 111362 to 111962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,616 DEBUG Processing 271/1125 atomic regions from SNP 81112 to 81712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,625 DEBUG Processing 431/848 atomic regions from SNP 129003 to 129603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,734 DEBUG Processing 196/642 atomic regions from SNP 58541 to 59141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,805 DEBUG Processing 373/468 atomic regions from SNP 111662 to 112262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,808 DEBUG Processing 451/885 atomic regions from SNP 135277 to 135877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,821 DEBUG Processing 279/1013 atomic regions from SNP 83629 to 84229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,864 DEBUG Processing 432/848 atomic regions from SNP 129303 to 129903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,891 DEBUG Processing 272/1125 atomic regions from SNP 81412 to 82012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,967 DEBUG Processing 197/642 atomic regions from SNP 58841 to 59441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,034 DEBUG Processing 374/468 atomic regions from SNP 111962 to 112562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,071 DEBUG Processing 452/885 atomic regions from SNP 135577 to 136177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,082 DEBUG Processing 280/1013 atomic regions from SNP 83929 to 84529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,106 DEBUG Processing 433/848 atomic regions from SNP 129603 to 130203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,170 DEBUG Processing 273/1125 atomic regions from SNP 81712 to 82312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,204 DEBUG Processing 198/642 atomic regions from SNP 59141 to 59741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,270 DEBUG Processing 375/468 atomic regions from SNP 112262 to 112862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,330 DEBUG Processing 453/885 atomic regions from SNP 135877 to 136477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,341 DEBUG Processing 281/1013 atomic regions from SNP 84229 to 84829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,345 DEBUG Processing 434/848 atomic regions from SNP 129903 to 130503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,436 DEBUG Processing 199/642 atomic regions from SNP 59441 to 60041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,445 DEBUG Processing 274/1125 atomic regions from SNP 82012 to 82612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,505 DEBUG Processing 376/468 atomic regions from SNP 112562 to 113162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,584 DEBUG Processing 454/885 atomic regions from SNP 136177 to 136777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,586 DEBUG Processing 435/848 atomic regions from SNP 130203 to 130803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,603 DEBUG Processing 282/1013 atomic regions from SNP 84529 to 85129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,667 DEBUG Processing 200/642 atomic regions from SNP 59741 to 60341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,718 DEBUG Processing 275/1125 atomic regions from SNP 82312 to 82912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,742 DEBUG Processing 377/468 atomic regions from SNP 112862 to 113462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,829 DEBUG Processing 436/848 atomic regions from SNP 130503 to 131103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,831 DEBUG Processing 455/885 atomic regions from SNP 136477 to 137077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,867 DEBUG Processing 283/1013 atomic regions from SNP 84829 to 85429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,900 DEBUG Processing 201/642 atomic regions from SNP 60041 to 60641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,970 DEBUG Processing 378/468 atomic regions from SNP 113162 to 113762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,982 DEBUG Processing 276/1125 atomic regions from SNP 82612 to 83212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,075 DEBUG Processing 437/848 atomic regions from SNP 130803 to 131403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,082 DEBUG Processing 456/885 atomic regions from SNP 136777 to 137377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,136 DEBUG Processing 284/1013 atomic regions from SNP 85129 to 85729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,138 DEBUG Processing 202/642 atomic regions from SNP 60341 to 60941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,196 DEBUG Processing 379/468 atomic regions from SNP 113462 to 114062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,247 DEBUG Processing 277/1125 atomic regions from SNP 82912 to 83512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,317 DEBUG Processing 438/848 atomic regions from SNP 131103 to 131703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,334 DEBUG Processing 457/885 atomic regions from SNP 137077 to 137677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,374 DEBUG Processing 203/642 atomic regions from SNP 60641 to 61241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,404 DEBUG Processing 285/1013 atomic regions from SNP 85429 to 86029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,426 DEBUG Processing 380/468 atomic regions from SNP 113762 to 114362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,513 DEBUG Processing 278/1125 atomic regions from SNP 83212 to 83812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,563 DEBUG Processing 439/848 atomic regions from SNP 131403 to 132003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,600 DEBUG Processing 458/885 atomic regions from SNP 137377 to 137977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,615 DEBUG Processing 204/642 atomic regions from SNP 60941 to 61541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,668 DEBUG Processing 286/1013 atomic regions from SNP 85729 to 86329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,685 DEBUG Processing 381/468 atomic regions from SNP 114062 to 114662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,789 DEBUG Processing 279/1125 atomic regions from SNP 83512 to 84112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,810 DEBUG Processing 440/848 atomic regions from SNP 131703 to 132303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,853 DEBUG Processing 205/642 atomic regions from SNP 61241 to 61841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,877 DEBUG Processing 459/885 atomic regions from SNP 137677 to 138277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,930 DEBUG Processing 287/1013 atomic regions from SNP 86029 to 86629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,939 DEBUG Processing 382/468 atomic regions from SNP 114362 to 114962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,060 DEBUG Processing 441/848 atomic regions from SNP 132003 to 132603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,084 DEBUG Processing 280/1125 atomic regions from SNP 83812 to 84412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,100 DEBUG Processing 206/642 atomic regions from SNP 61541 to 62141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,163 DEBUG Processing 460/885 atomic regions from SNP 137977 to 138577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,171 DEBUG Processing 383/468 atomic regions from SNP 114662 to 115262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,197 DEBUG Processing 288/1013 atomic regions from SNP 86329 to 86929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,306 DEBUG Processing 442/848 atomic regions from SNP 132303 to 132903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,344 DEBUG Processing 207/642 atomic regions from SNP 61841 to 62441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,395 DEBUG Processing 281/1125 atomic regions from SNP 84112 to 84712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,409 DEBUG Processing 384/468 atomic regions from SNP 114962 to 115562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,442 DEBUG Processing 461/885 atomic regions from SNP 138277 to 138877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,458 DEBUG Processing 289/1013 atomic regions from SNP 86629 to 87229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,544 DEBUG Processing 443/848 atomic regions from SNP 132603 to 133203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,585 DEBUG Processing 208/642 atomic regions from SNP 62141 to 62741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,652 DEBUG Processing 385/468 atomic regions from SNP 115262 to 115862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,703 DEBUG Processing 282/1125 atomic regions from SNP 84412 to 85012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,723 DEBUG Processing 290/1013 atomic regions from SNP 86929 to 87529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,732 DEBUG Processing 462/885 atomic regions from SNP 138577 to 139177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,781 DEBUG Processing 444/848 atomic regions from SNP 132903 to 133503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,821 DEBUG Processing 209/642 atomic regions from SNP 62441 to 63041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,891 DEBUG Processing 386/468 atomic regions from SNP 115562 to 116162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,984 DEBUG Processing 291/1013 atomic regions from SNP 87229 to 87829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,998 DEBUG Processing 283/1125 atomic regions from SNP 84712 to 85312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,002 DEBUG Processing 463/885 atomic regions from SNP 138877 to 139477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,024 DEBUG Processing 445/848 atomic regions from SNP 133203 to 133803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,053 DEBUG Processing 210/642 atomic regions from SNP 62741 to 63341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,128 DEBUG Processing 387/468 atomic regions from SNP 115862 to 116462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,247 DEBUG Processing 292/1013 atomic regions from SNP 87529 to 88129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,269 DEBUG Processing 446/848 atomic regions from SNP 133503 to 134103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,277 DEBUG Processing 464/885 atomic regions from SNP 139177 to 139777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,281 DEBUG Processing 211/642 atomic regions from SNP 63041 to 63641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,291 DEBUG Processing 284/1125 atomic regions from SNP 85012 to 85612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,364 DEBUG Processing 388/468 atomic regions from SNP 116162 to 116762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,510 DEBUG Processing 293/1013 atomic regions from SNP 87829 to 88429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,513 DEBUG Processing 212/642 atomic regions from SNP 63341 to 63941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,518 DEBUG Processing 447/848 atomic regions from SNP 133803 to 134403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,546 DEBUG Processing 465/885 atomic regions from SNP 139477 to 140077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,585 DEBUG Processing 285/1125 atomic regions from SNP 85312 to 85912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,597 DEBUG Processing 389/468 atomic regions from SNP 116462 to 117062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,752 DEBUG Processing 213/642 atomic regions from SNP 63641 to 64241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,768 DEBUG Processing 448/848 atomic regions from SNP 134103 to 134703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,779 DEBUG Processing 294/1013 atomic regions from SNP 88129 to 88729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,827 DEBUG Processing 466/885 atomic regions from SNP 139777 to 140377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,828 DEBUG Processing 390/468 atomic regions from SNP 116762 to 117362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,862 DEBUG Processing 286/1125 atomic regions from SNP 85612 to 86212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,990 DEBUG Processing 214/642 atomic regions from SNP 63941 to 64541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,011 DEBUG Processing 449/848 atomic regions from SNP 134403 to 135003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,048 DEBUG Processing 295/1013 atomic regions from SNP 88429 to 89029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,067 DEBUG Processing 391/468 atomic regions from SNP 117062 to 117662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,084 DEBUG Processing 467/885 atomic regions from SNP 140077 to 140677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,145 DEBUG Processing 287/1125 atomic regions from SNP 85912 to 86512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,221 DEBUG Processing 215/642 atomic regions from SNP 64241 to 64841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,250 DEBUG Processing 450/848 atomic regions from SNP 134703 to 135303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,307 DEBUG Processing 392/468 atomic regions from SNP 117362 to 117962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,318 DEBUG Processing 296/1013 atomic regions from SNP 88729 to 89329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,341 DEBUG Processing 468/885 atomic regions from SNP 140377 to 140977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,440 DEBUG Processing 288/1125 atomic regions from SNP 86212 to 86812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,453 DEBUG Processing 216/642 atomic regions from SNP 64541 to 65141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,490 DEBUG Processing 451/848 atomic regions from SNP 135003 to 135603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,540 DEBUG Processing 393/468 atomic regions from SNP 117662 to 118262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,588 DEBUG Processing 297/1013 atomic regions from SNP 89029 to 89629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,596 DEBUG Processing 469/885 atomic regions from SNP 140677 to 141277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,693 DEBUG Processing 217/642 atomic regions from SNP 64841 to 65441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,723 DEBUG Processing 289/1125 atomic regions from SNP 86512 to 87112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,735 DEBUG Processing 452/848 atomic regions from SNP 135303 to 135903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,768 DEBUG Processing 394/468 atomic regions from SNP 117962 to 118562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,852 DEBUG Processing 298/1013 atomic regions from SNP 89329 to 89929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,870 DEBUG Processing 470/885 atomic regions from SNP 140977 to 141577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,939 DEBUG Processing 218/642 atomic regions from SNP 65141 to 65741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,978 DEBUG Processing 453/848 atomic regions from SNP 135603 to 136203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,002 DEBUG Processing 395/468 atomic regions from SNP 118262 to 118862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,003 DEBUG Processing 290/1125 atomic regions from SNP 86812 to 87412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,111 DEBUG Processing 299/1013 atomic regions from SNP 89629 to 90229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,143 DEBUG Processing 471/885 atomic regions from SNP 141277 to 141877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,187 DEBUG Processing 219/642 atomic regions from SNP 65441 to 66041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,227 DEBUG Processing 454/848 atomic regions from SNP 135903 to 136503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,244 DEBUG Processing 396/468 atomic regions from SNP 118562 to 119162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,284 DEBUG Processing 291/1125 atomic regions from SNP 87112 to 87712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,368 DEBUG Processing 300/1013 atomic regions from SNP 89929 to 90529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,430 DEBUG Processing 220/642 atomic regions from SNP 65741 to 66341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,430 DEBUG Processing 472/885 atomic regions from SNP 141577 to 142177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,478 DEBUG Processing 455/848 atomic regions from SNP 136203 to 136803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,490 DEBUG Processing 397/468 atomic regions from SNP 118862 to 119462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,565 DEBUG Processing 292/1125 atomic regions from SNP 87412 to 88012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,623 DEBUG Processing 301/1013 atomic regions from SNP 90229 to 90829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,661 DEBUG Processing 221/642 atomic regions from SNP 66041 to 66641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,714 DEBUG Processing 473/885 atomic regions from SNP 141877 to 142477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,728 DEBUG Processing 398/468 atomic regions from SNP 119162 to 119762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,732 DEBUG Processing 456/848 atomic regions from SNP 136503 to 137103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,848 DEBUG Processing 293/1125 atomic regions from SNP 87712 to 88312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,888 DEBUG Processing 302/1013 atomic regions from SNP 90529 to 91129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,891 DEBUG Processing 222/642 atomic regions from SNP 66341 to 66941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,959 DEBUG Processing 399/468 atomic regions from SNP 119462 to 120062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,978 DEBUG Processing 457/848 atomic regions from SNP 136803 to 137403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,999 DEBUG Processing 474/885 atomic regions from SNP 142177 to 142777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,141 DEBUG Processing 294/1125 atomic regions from SNP 88012 to 88612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,144 DEBUG Processing 223/642 atomic regions from SNP 66641 to 67241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,159 DEBUG Processing 303/1013 atomic regions from SNP 90829 to 91429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,200 DEBUG Processing 400/468 atomic regions from SNP 119762 to 120362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,222 DEBUG Processing 458/848 atomic regions from SNP 137103 to 137703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,300 DEBUG Processing 475/885 atomic regions from SNP 142477 to 143077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,398 DEBUG Processing 224/642 atomic regions from SNP 66941 to 67541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,425 DEBUG Processing 295/1125 atomic regions from SNP 88312 to 88912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,435 DEBUG Processing 304/1013 atomic regions from SNP 91129 to 91729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,443 DEBUG Processing 401/468 atomic regions from SNP 120062 to 120662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,465 DEBUG Processing 459/848 atomic regions from SNP 137403 to 138003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,587 DEBUG Processing 476/885 atomic regions from SNP 142777 to 143377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,636 DEBUG Processing 225/642 atomic regions from SNP 67241 to 67841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,686 DEBUG Processing 402/468 atomic regions from SNP 120362 to 120962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,713 DEBUG Processing 296/1125 atomic regions from SNP 88612 to 89212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,714 DEBUG Processing 305/1013 atomic regions from SNP 91429 to 92029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,717 DEBUG Processing 460/848 atomic regions from SNP 137703 to 138303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,865 DEBUG Processing 226/642 atomic regions from SNP 67541 to 68141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,870 DEBUG Processing 477/885 atomic regions from SNP 143077 to 143677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,924 DEBUG Processing 403/468 atomic regions from SNP 120662 to 121262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,969 DEBUG Processing 461/848 atomic regions from SNP 138003 to 138603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,991 DEBUG Processing 306/1013 atomic regions from SNP 91729 to 92329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,002 DEBUG Processing 297/1125 atomic regions from SNP 88912 to 89512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,101 DEBUG Processing 227/642 atomic regions from SNP 67841 to 68441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,156 DEBUG Processing 478/885 atomic regions from SNP 143377 to 143977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,163 DEBUG Processing 404/468 atomic regions from SNP 120962 to 121562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,221 DEBUG Processing 462/848 atomic regions from SNP 138303 to 138903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,273 DEBUG Processing 307/1013 atomic regions from SNP 92029 to 92629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,316 DEBUG Processing 298/1125 atomic regions from SNP 89212 to 89812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,344 DEBUG Processing 228/642 atomic regions from SNP 68141 to 68741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,392 DEBUG Processing 405/468 atomic regions from SNP 121262 to 121862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,442 DEBUG Processing 479/885 atomic regions from SNP 143677 to 144277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,467 DEBUG Processing 463/848 atomic regions from SNP 138603 to 139203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,544 DEBUG Processing 308/1013 atomic regions from SNP 92329 to 92929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,593 DEBUG Processing 229/642 atomic regions from SNP 68441 to 69041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,631 DEBUG Processing 406/468 atomic regions from SNP 121562 to 122162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,635 DEBUG Processing 299/1125 atomic regions from SNP 89512 to 90112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,717 DEBUG Processing 464/848 atomic regions from SNP 138903 to 139503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,731 DEBUG Processing 480/885 atomic regions from SNP 143977 to 144577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,812 DEBUG Processing 309/1013 atomic regions from SNP 92629 to 93229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,836 DEBUG Processing 230/642 atomic regions from SNP 68741 to 69341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,898 DEBUG Processing 407/468 atomic regions from SNP 121862 to 122462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,919 DEBUG Processing 300/1125 atomic regions from SNP 89812 to 90412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,967 DEBUG Processing 465/848 atomic regions from SNP 139203 to 139803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,022 DEBUG Processing 481/885 atomic regions from SNP 144277 to 144877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,076 DEBUG Processing 231/642 atomic regions from SNP 69041 to 69641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,085 DEBUG Processing 310/1013 atomic regions from SNP 92929 to 93529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,149 DEBUG Processing 408/468 atomic regions from SNP 122162 to 122762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,199 DEBUG Processing 301/1125 atomic regions from SNP 90112 to 90712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,220 DEBUG Processing 466/848 atomic regions from SNP 139503 to 140103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,307 DEBUG Processing 482/885 atomic regions from SNP 144577 to 145177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,319 DEBUG Processing 232/642 atomic regions from SNP 69341 to 69941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,359 DEBUG Processing 311/1013 atomic regions from SNP 93229 to 93829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,382 DEBUG Processing 409/468 atomic regions from SNP 122462 to 123062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,468 DEBUG Processing 467/848 atomic regions from SNP 139803 to 140403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,479 DEBUG Processing 302/1125 atomic regions from SNP 90412 to 91012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,565 DEBUG Processing 233/642 atomic regions from SNP 69641 to 70241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,588 DEBUG Processing 483/885 atomic regions from SNP 144877 to 145477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,619 DEBUG Processing 410/468 atomic regions from SNP 122762 to 123362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,634 DEBUG Processing 312/1013 atomic regions from SNP 93529 to 94129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,714 DEBUG Processing 468/848 atomic regions from SNP 140103 to 140703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,760 DEBUG Processing 303/1125 atomic regions from SNP 90712 to 91312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,805 DEBUG Processing 234/642 atomic regions from SNP 69941 to 70541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,866 DEBUG Processing 411/468 atomic regions from SNP 123062 to 123662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,868 DEBUG Processing 484/885 atomic regions from SNP 145177 to 145777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,910 DEBUG Processing 313/1013 atomic regions from SNP 93829 to 94429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,956 DEBUG Processing 469/848 atomic regions from SNP 140403 to 141003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,039 DEBUG Processing 304/1125 atomic regions from SNP 91012 to 91612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,042 DEBUG Processing 235/642 atomic regions from SNP 70241 to 70841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,108 DEBUG Processing 412/468 atomic regions from SNP 123362 to 123962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,147 DEBUG Processing 485/885 atomic regions from SNP 145477 to 146077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,185 DEBUG Processing 314/1013 atomic regions from SNP 94129 to 94729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,198 DEBUG Processing 470/848 atomic regions from SNP 140703 to 141303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,275 DEBUG Processing 236/642 atomic regions from SNP 70541 to 71141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,316 DEBUG Processing 305/1125 atomic regions from SNP 91312 to 91912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,350 DEBUG Processing 413/468 atomic regions from SNP 123662 to 124262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,434 DEBUG Processing 486/885 atomic regions from SNP 145777 to 146377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,441 DEBUG Processing 471/848 atomic regions from SNP 141003 to 141603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,457 DEBUG Processing 315/1013 atomic regions from SNP 94429 to 95029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,510 DEBUG Processing 237/642 atomic regions from SNP 70841 to 71441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,588 DEBUG Processing 414/468 atomic regions from SNP 123962 to 124562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,590 DEBUG Processing 306/1125 atomic regions from SNP 91612 to 92212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,686 DEBUG Processing 472/848 atomic regions from SNP 141303 to 141903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,713 DEBUG Processing 487/885 atomic regions from SNP 146077 to 146677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,728 DEBUG Processing 316/1013 atomic regions from SNP 94729 to 95329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,750 DEBUG Processing 238/642 atomic regions from SNP 71141 to 71741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,823 DEBUG Processing 415/468 atomic regions from SNP 124262 to 124862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,870 DEBUG Processing 307/1125 atomic regions from SNP 91912 to 92512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,930 DEBUG Processing 473/848 atomic regions from SNP 141603 to 142203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,989 DEBUG Processing 239/642 atomic regions from SNP 71441 to 72041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,997 DEBUG Processing 488/885 atomic regions from SNP 146377 to 146977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,024 DEBUG Processing 317/1013 atomic regions from SNP 95029 to 95629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,057 DEBUG Processing 416/468 atomic regions from SNP 124562 to 125162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,153 DEBUG Processing 308/1125 atomic regions from SNP 92212 to 92812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,174 DEBUG Processing 474/848 atomic regions from SNP 141903 to 142503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,233 DEBUG Processing 240/642 atomic regions from SNP 71741 to 72341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,276 DEBUG Processing 489/885 atomic regions from SNP 146677 to 147277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,297 DEBUG Processing 417/468 atomic regions from SNP 124862 to 125462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,306 DEBUG Processing 318/1013 atomic regions from SNP 95329 to 95929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,422 DEBUG Processing 475/848 atomic regions from SNP 142203 to 142803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,440 DEBUG Processing 309/1125 atomic regions from SNP 92512 to 93112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,476 DEBUG Processing 241/642 atomic regions from SNP 72041 to 72641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,534 DEBUG Processing 490/885 atomic regions from SNP 146977 to 147577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,535 DEBUG Processing 418/468 atomic regions from SNP 125162 to 125762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,580 DEBUG Processing 319/1013 atomic regions from SNP 95629 to 96229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,674 DEBUG Processing 476/848 atomic regions from SNP 142503 to 143103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,727 DEBUG Processing 310/1125 atomic regions from SNP 92812 to 93412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,743 DEBUG Processing 242/642 atomic regions from SNP 72341 to 72941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,772 DEBUG Processing 419/468 atomic regions from SNP 125462 to 126062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,785 DEBUG Processing 491/885 atomic regions from SNP 147277 to 147877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,845 DEBUG Processing 320/1013 atomic regions from SNP 95929 to 96529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,919 DEBUG Processing 477/848 atomic regions from SNP 142803 to 143403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,013 DEBUG Processing 311/1125 atomic regions from SNP 93112 to 93712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,016 DEBUG Processing 420/468 atomic regions from SNP 125762 to 126362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,017 DEBUG Processing 243/642 atomic regions from SNP 72641 to 73241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,041 DEBUG Processing 492/885 atomic regions from SNP 147577 to 148177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,113 DEBUG Processing 321/1013 atomic regions from SNP 96229 to 96829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,152 DEBUG Processing 478/848 atomic regions from SNP 143103 to 143703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,261 DEBUG Processing 421/468 atomic regions from SNP 126062 to 126662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,293 DEBUG Processing 244/642 atomic regions from SNP 72941 to 73541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,303 DEBUG Processing 312/1125 atomic regions from SNP 93412 to 94012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,305 DEBUG Processing 493/885 atomic regions from SNP 147877 to 148477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,380 DEBUG Processing 322/1013 atomic regions from SNP 96529 to 97129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,418 DEBUG Processing 479/848 atomic regions from SNP 143403 to 144003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,504 DEBUG Processing 422/468 atomic regions from SNP 126362 to 126962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,540 DEBUG Processing 245/642 atomic regions from SNP 73241 to 73841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,568 DEBUG Processing 494/885 atomic regions from SNP 148177 to 148777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,597 DEBUG Processing 313/1125 atomic regions from SNP 93712 to 94312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,650 DEBUG Processing 323/1013 atomic regions from SNP 96829 to 97429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,682 DEBUG Processing 480/848 atomic regions from SNP 143703 to 144303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,740 DEBUG Processing 423/468 atomic regions from SNP 126662 to 127262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,783 DEBUG Processing 246/642 atomic regions from SNP 73541 to 74141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,822 DEBUG Processing 495/885 atomic regions from SNP 148477 to 149077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,885 DEBUG Processing 314/1125 atomic regions from SNP 94012 to 94612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,926 DEBUG Processing 324/1013 atomic regions from SNP 97129 to 97729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,929 DEBUG Processing 481/848 atomic regions from SNP 144003 to 144603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,976 DEBUG Processing 424/468 atomic regions from SNP 126962 to 127562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,022 DEBUG Processing 247/642 atomic regions from SNP 73841 to 74441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,069 DEBUG Processing 496/885 atomic regions from SNP 148777 to 149377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,173 DEBUG Processing 315/1125 atomic regions from SNP 94312 to 94912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,182 DEBUG Processing 482/848 atomic regions from SNP 144303 to 144903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,210 DEBUG Processing 325/1013 atomic regions from SNP 97429 to 98029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,228 DEBUG Processing 425/468 atomic regions from SNP 127262 to 127862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,269 DEBUG Processing 248/642 atomic regions from SNP 74141 to 74741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,310 DEBUG Processing 497/885 atomic regions from SNP 149077 to 149677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,439 DEBUG Processing 483/848 atomic regions from SNP 144603 to 145203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,471 DEBUG Processing 316/1125 atomic regions from SNP 94612 to 95212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,478 DEBUG Processing 426/468 atomic regions from SNP 127562 to 128162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,491 DEBUG Processing 326/1013 atomic regions from SNP 97729 to 98329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,521 DEBUG Processing 249/642 atomic regions from SNP 74441 to 75041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,551 DEBUG Processing 498/885 atomic regions from SNP 149377 to 149977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,692 DEBUG Processing 484/848 atomic regions from SNP 144903 to 145503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,720 DEBUG Processing 427/468 atomic regions from SNP 127862 to 128462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,766 DEBUG Processing 317/1125 atomic regions from SNP 94912 to 95512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,769 DEBUG Processing 327/1013 atomic regions from SNP 98029 to 98629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,784 DEBUG Processing 250/642 atomic regions from SNP 74741 to 75341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,797 DEBUG Processing 499/885 atomic regions from SNP 149677 to 150277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,939 DEBUG Processing 485/848 atomic regions from SNP 145203 to 145803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,950 DEBUG Processing 428/468 atomic regions from SNP 128162 to 128762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,045 DEBUG Processing 328/1013 atomic regions from SNP 98329 to 98929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,048 DEBUG Processing 500/885 atomic regions from SNP 149977 to 150577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,055 DEBUG Processing 251/642 atomic regions from SNP 75041 to 75641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,070 DEBUG Processing 318/1125 atomic regions from SNP 95212 to 95812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,178 DEBUG Processing 429/468 atomic regions from SNP 128462 to 129062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,187 DEBUG Processing 486/848 atomic regions from SNP 145503 to 146103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,297 DEBUG Processing 252/642 atomic regions from SNP 75341 to 75941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,299 DEBUG Processing 501/885 atomic regions from SNP 150277 to 150877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,318 DEBUG Processing 329/1013 atomic regions from SNP 98629 to 99229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,374 DEBUG Processing 319/1125 atomic regions from SNP 95512 to 96112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,413 DEBUG Processing 430/468 atomic regions from SNP 128762 to 129362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,433 DEBUG Processing 487/848 atomic regions from SNP 145803 to 146403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,538 DEBUG Processing 253/642 atomic regions from SNP 75641 to 76241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,546 DEBUG Processing 502/885 atomic regions from SNP 150577 to 151177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,591 DEBUG Processing 330/1013 atomic regions from SNP 98929 to 99529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,654 DEBUG Processing 431/468 atomic regions from SNP 129062 to 129662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,679 DEBUG Processing 320/1125 atomic regions from SNP 95812 to 96412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,680 DEBUG Processing 488/848 atomic regions from SNP 146103 to 146703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,775 DEBUG Processing 254/642 atomic regions from SNP 75941 to 76541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,794 DEBUG Processing 503/885 atomic regions from SNP 150877 to 151477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,868 DEBUG Processing 331/1013 atomic regions from SNP 99229 to 99829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,897 DEBUG Processing 432/468 atomic regions from SNP 129362 to 129962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,931 DEBUG Processing 489/848 atomic regions from SNP 146403 to 147003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,988 DEBUG Processing 321/1125 atomic regions from SNP 96112 to 96712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,015 DEBUG Processing 255/642 atomic regions from SNP 76241 to 76841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,047 DEBUG Processing 504/885 atomic regions from SNP 151177 to 151777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,139 DEBUG Processing 433/468 atomic regions from SNP 129662 to 130262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,158 DEBUG Processing 332/1013 atomic regions from SNP 99529 to 100129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,194 DEBUG Processing 490/848 atomic regions from SNP 146703 to 147303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,253 DEBUG Processing 256/642 atomic regions from SNP 76541 to 77141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,296 DEBUG Processing 322/1125 atomic regions from SNP 96412 to 97012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,301 DEBUG Processing 505/885 atomic regions from SNP 151477 to 152077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,395 DEBUG Processing 434/468 atomic regions from SNP 129962 to 130562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,437 DEBUG Processing 491/848 atomic regions from SNP 147003 to 147603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,452 DEBUG Processing 333/1013 atomic regions from SNP 99829 to 100429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,489 DEBUG Processing 257/642 atomic regions from SNP 76841 to 77441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,554 DEBUG Processing 506/885 atomic regions from SNP 151777 to 152377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,615 DEBUG Processing 323/1125 atomic regions from SNP 96712 to 97312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,639 DEBUG Processing 435/468 atomic regions from SNP 130262 to 130862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,680 DEBUG Processing 492/848 atomic regions from SNP 147303 to 147903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,734 DEBUG Processing 334/1013 atomic regions from SNP 100129 to 100729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,737 DEBUG Processing 258/642 atomic regions from SNP 77141 to 77741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,807 DEBUG Processing 507/885 atomic regions from SNP 152077 to 152677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,875 DEBUG Processing 436/468 atomic regions from SNP 130562 to 131162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,923 DEBUG Processing 493/848 atomic regions from SNP 147603 to 148203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,933 DEBUG Processing 324/1125 atomic regions from SNP 97012 to 97612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,983 DEBUG Processing 259/642 atomic regions from SNP 77441 to 78041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,035 DEBUG Processing 335/1013 atomic regions from SNP 100429 to 101029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,080 DEBUG Processing 508/885 atomic regions from SNP 152377 to 152977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,107 DEBUG Processing 437/468 atomic regions from SNP 130862 to 131462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,165 DEBUG Processing 494/848 atomic regions from SNP 147903 to 148503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,231 DEBUG Processing 260/642 atomic regions from SNP 77741 to 78341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,242 DEBUG Processing 325/1125 atomic regions from SNP 97312 to 97912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,321 DEBUG Processing 336/1013 atomic regions from SNP 100729 to 101329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,347 DEBUG Processing 438/468 atomic regions from SNP 131162 to 131762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,365 DEBUG Processing 509/885 atomic regions from SNP 152677 to 153277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,411 DEBUG Processing 495/848 atomic regions from SNP 148203 to 148803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,467 DEBUG Processing 261/642 atomic regions from SNP 78041 to 78641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,556 DEBUG Processing 326/1125 atomic regions from SNP 97612 to 98212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,597 DEBUG Processing 439/468 atomic regions from SNP 131462 to 132062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,605 DEBUG Processing 337/1013 atomic regions from SNP 101029 to 101629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,650 DEBUG Processing 510/885 atomic regions from SNP 152977 to 153577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,654 DEBUG Processing 496/848 atomic regions from SNP 148503 to 149103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,702 DEBUG Processing 262/642 atomic regions from SNP 78341 to 78941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,849 DEBUG Processing 440/468 atomic regions from SNP 131762 to 132362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,858 DEBUG Processing 327/1125 atomic regions from SNP 97912 to 98512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,887 DEBUG Processing 338/1013 atomic regions from SNP 101329 to 101929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,908 DEBUG Processing 497/848 atomic regions from SNP 148803 to 149403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,940 DEBUG Processing 511/885 atomic regions from SNP 153277 to 153877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,944 DEBUG Processing 263/642 atomic regions from SNP 78641 to 79241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,097 DEBUG Processing 441/468 atomic regions from SNP 132062 to 132662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,165 DEBUG Processing 498/848 atomic regions from SNP 149103 to 149703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,174 DEBUG Processing 328/1125 atomic regions from SNP 98212 to 98812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,174 DEBUG Processing 339/1013 atomic regions from SNP 101629 to 102229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,195 DEBUG Processing 264/642 atomic regions from SNP 78941 to 79541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,234 DEBUG Processing 512/885 atomic regions from SNP 153577 to 154177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,348 DEBUG Processing 442/468 atomic regions from SNP 132362 to 132962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,418 DEBUG Processing 499/848 atomic regions from SNP 149403 to 150003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,449 DEBUG Processing 265/642 atomic regions from SNP 79241 to 79841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,456 DEBUG Processing 340/1013 atomic regions from SNP 101929 to 102529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,485 DEBUG Processing 329/1125 atomic regions from SNP 98512 to 99112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,519 DEBUG Processing 513/885 atomic regions from SNP 153877 to 154477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,587 DEBUG Processing 443/468 atomic regions from SNP 132662 to 133262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,687 DEBUG Processing 500/848 atomic regions from SNP 149703 to 150303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,706 DEBUG Processing 266/642 atomic regions from SNP 79541 to 80141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,738 DEBUG Processing 341/1013 atomic regions from SNP 102229 to 102829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,780 DEBUG Processing 330/1125 atomic regions from SNP 98812 to 99412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,803 DEBUG Processing 514/885 atomic regions from SNP 154177 to 154777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,827 DEBUG Processing 444/468 atomic regions from SNP 132962 to 133562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,940 DEBUG Processing 501/848 atomic regions from SNP 150003 to 150603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,953 DEBUG Processing 267/642 atomic regions from SNP 79841 to 80441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,020 DEBUG Processing 342/1013 atomic regions from SNP 102529 to 103129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,071 DEBUG Processing 445/468 atomic regions from SNP 133262 to 133862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,092 DEBUG Processing 331/1125 atomic regions from SNP 99112 to 99712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,095 DEBUG Processing 515/885 atomic regions from SNP 154477 to 155077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,195 DEBUG Processing 502/848 atomic regions from SNP 150303 to 150903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,205 DEBUG Processing 268/642 atomic regions from SNP 80141 to 80741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,322 DEBUG Processing 343/1013 atomic regions from SNP 102829 to 103429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,329 DEBUG Processing 446/468 atomic regions from SNP 133562 to 134162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,377 DEBUG Processing 332/1125 atomic regions from SNP 99412 to 100012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,385 DEBUG Processing 516/885 atomic regions from SNP 154777 to 155377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,437 DEBUG Processing 503/848 atomic regions from SNP 150603 to 151203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,444 DEBUG Processing 269/642 atomic regions from SNP 80441 to 81041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,578 DEBUG Processing 447/468 atomic regions from SNP 133862 to 134462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,601 DEBUG Processing 344/1013 atomic regions from SNP 103129 to 103729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,657 DEBUG Processing 333/1125 atomic regions from SNP 99712 to 100312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,667 DEBUG Processing 517/885 atomic regions from SNP 155077 to 155677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,687 DEBUG Processing 504/848 atomic regions from SNP 150903 to 151503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,693 DEBUG Processing 270/642 atomic regions from SNP 80741 to 81341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,818 DEBUG Processing 448/468 atomic regions from SNP 134162 to 134762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,877 DEBUG Processing 345/1013 atomic regions from SNP 103429 to 104029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,936 DEBUG Processing 505/848 atomic regions from SNP 151203 to 151803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,936 DEBUG Processing 334/1125 atomic regions from SNP 100012 to 100612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,948 DEBUG Processing 271/642 atomic regions from SNP 81041 to 81641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,954 DEBUG Processing 518/885 atomic regions from SNP 155377 to 155977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,049 DEBUG Processing 449/468 atomic regions from SNP 134462 to 135062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,156 DEBUG Processing 346/1013 atomic regions from SNP 103729 to 104329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,182 DEBUG Processing 506/848 atomic regions from SNP 151503 to 152103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,212 DEBUG Processing 272/642 atomic regions from SNP 81341 to 81941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,225 DEBUG Processing 335/1125 atomic regions from SNP 100312 to 100912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,240 DEBUG Processing 519/885 atomic regions from SNP 155677 to 156277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,288 DEBUG Processing 450/468 atomic regions from SNP 134762 to 135362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,429 DEBUG Processing 507/848 atomic regions from SNP 151803 to 152403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,430 DEBUG Processing 347/1013 atomic regions from SNP 104029 to 104629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,467 DEBUG Processing 273/642 atomic regions from SNP 81641 to 82241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,510 DEBUG Processing 336/1125 atomic regions from SNP 100612 to 101212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,531 DEBUG Processing 520/885 atomic regions from SNP 155977 to 156577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,534 DEBUG Processing 451/468 atomic regions from SNP 135062 to 135662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,676 DEBUG Processing 508/848 atomic regions from SNP 152103 to 152703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,699 DEBUG Processing 348/1013 atomic regions from SNP 104329 to 104929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,717 DEBUG Processing 274/642 atomic regions from SNP 81941 to 82541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,780 DEBUG Processing 452/468 atomic regions from SNP 135362 to 135962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,786 DEBUG Processing 337/1125 atomic regions from SNP 100912 to 101512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,814 DEBUG Processing 521/885 atomic regions from SNP 156277 to 156877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,927 DEBUG Processing 509/848 atomic regions from SNP 152403 to 153003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,964 DEBUG Processing 275/642 atomic regions from SNP 82241 to 82841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,973 DEBUG Processing 349/1013 atomic regions from SNP 104629 to 105229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,027 DEBUG Processing 453/468 atomic regions from SNP 135662 to 136262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,063 DEBUG Processing 338/1125 atomic regions from SNP 101212 to 101812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,091 DEBUG Processing 522/885 atomic regions from SNP 156577 to 157177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,173 DEBUG Processing 510/848 atomic regions from SNP 152703 to 153303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,207 DEBUG Processing 276/642 atomic regions from SNP 82541 to 83141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,246 DEBUG Processing 350/1013 atomic regions from SNP 104929 to 105529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,268 DEBUG Processing 454/468 atomic regions from SNP 135962 to 136562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,345 DEBUG Processing 339/1125 atomic regions from SNP 101512 to 102112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,369 DEBUG Processing 523/885 atomic regions from SNP 156877 to 157477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,417 DEBUG Processing 511/848 atomic regions from SNP 153003 to 153603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,450 DEBUG Processing 277/642 atomic regions from SNP 82841 to 83441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,507 DEBUG Processing 455/468 atomic regions from SNP 136262 to 136862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,519 DEBUG Processing 351/1013 atomic regions from SNP 105229 to 105829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,631 DEBUG Processing 340/1125 atomic regions from SNP 101812 to 102412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,646 DEBUG Processing 524/885 atomic regions from SNP 157177 to 157777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,669 DEBUG Processing 512/848 atomic regions from SNP 153303 to 153903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,694 DEBUG Processing 278/642 atomic regions from SNP 83141 to 83741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,748 DEBUG Processing 456/468 atomic regions from SNP 136562 to 137162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,793 DEBUG Processing 352/1013 atomic regions from SNP 105529 to 106129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,917 DEBUG Processing 341/1125 atomic regions from SNP 102112 to 102712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,920 DEBUG Processing 513/848 atomic regions from SNP 153603 to 154203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,925 DEBUG Processing 525/885 atomic regions from SNP 157477 to 158077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,934 DEBUG Processing 279/642 atomic regions from SNP 83441 to 84041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,984 DEBUG Processing 457/468 atomic regions from SNP 136862 to 137462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,065 DEBUG Processing 353/1013 atomic regions from SNP 105829 to 106429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,173 DEBUG Processing 514/848 atomic regions from SNP 153903 to 154503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,179 DEBUG Processing 280/642 atomic regions from SNP 83741 to 84341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,182 DEBUG Processing 526/885 atomic regions from SNP 157777 to 158377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,207 DEBUG Processing 342/1125 atomic regions from SNP 102412 to 103012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,221 DEBUG Processing 458/468 atomic regions from SNP 137162 to 137762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,342 DEBUG Processing 354/1013 atomic regions from SNP 106129 to 106729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,424 DEBUG Processing 281/642 atomic regions from SNP 84041 to 84641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,437 DEBUG Processing 515/848 atomic regions from SNP 154203 to 154803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,459 DEBUG Processing 459/468 atomic regions from SNP 137462 to 138062 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,468 DEBUG Processing 527/885 atomic regions from SNP 158077 to 158677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,495 DEBUG Processing 343/1125 atomic regions from SNP 102712 to 103312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,619 DEBUG Processing 355/1013 atomic regions from SNP 106429 to 107029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,675 DEBUG Processing 282/642 atomic regions from SNP 84341 to 84941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,701 DEBUG Processing 460/468 atomic regions from SNP 137762 to 138362 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,712 DEBUG Processing 516/848 atomic regions from SNP 154503 to 155103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,750 DEBUG Processing 528/885 atomic regions from SNP 158377 to 158977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,794 DEBUG Processing 344/1125 atomic regions from SNP 103012 to 103612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,893 DEBUG Processing 356/1013 atomic regions from SNP 106729 to 107329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,935 DEBUG Processing 283/642 atomic regions from SNP 84641 to 85241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,956 DEBUG Processing 461/468 atomic regions from SNP 138062 to 138662 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,965 DEBUG Processing 517/848 atomic regions from SNP 154803 to 155403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,039 DEBUG Processing 529/885 atomic regions from SNP 158677 to 159277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,126 DEBUG Processing 345/1125 atomic regions from SNP 103312 to 103912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,172 DEBUG Processing 357/1013 atomic regions from SNP 107029 to 107629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,187 DEBUG Processing 284/642 atomic regions from SNP 84941 to 85541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,205 DEBUG Processing 462/468 atomic regions from SNP 138362 to 138962 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,207 DEBUG Processing 518/848 atomic regions from SNP 155103 to 155703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,325 DEBUG Processing 530/885 atomic regions from SNP 158977 to 159577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,435 DEBUG Processing 346/1125 atomic regions from SNP 103612 to 104212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,442 DEBUG Processing 285/642 atomic regions from SNP 85241 to 85841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,449 DEBUG Processing 519/848 atomic regions from SNP 155403 to 156003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,455 DEBUG Processing 358/1013 atomic regions from SNP 107329 to 107929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,457 DEBUG Processing 463/468 atomic regions from SNP 138662 to 139262 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,593 DEBUG Processing 531/885 atomic regions from SNP 159277 to 159877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,694 DEBUG Processing 286/642 atomic regions from SNP 85541 to 86141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,702 DEBUG Processing 520/848 atomic regions from SNP 155703 to 156303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,702 DEBUG Processing 464/468 atomic regions from SNP 138962 to 139562 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,737 DEBUG Processing 359/1013 atomic regions from SNP 107629 to 108229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,758 DEBUG Processing 347/1125 atomic regions from SNP 103912 to 104512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,851 DEBUG Processing 532/885 atomic regions from SNP 159577 to 160177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,950 DEBUG Processing 287/642 atomic regions from SNP 85841 to 86441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,953 DEBUG Processing 465/468 atomic regions from SNP 139262 to 139862 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,954 DEBUG Processing 521/848 atomic regions from SNP 156003 to 156603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,017 DEBUG Processing 360/1013 atomic regions from SNP 107929 to 108529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,070 DEBUG Processing 348/1125 atomic regions from SNP 104212 to 104812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,098 DEBUG Processing 533/885 atomic regions from SNP 159877 to 160477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,206 DEBUG Processing 522/848 atomic regions from SNP 156303 to 156903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,211 DEBUG Processing 466/468 atomic regions from SNP 139562 to 140162 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,211 DEBUG Processing 288/642 atomic regions from SNP 86141 to 86741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,301 DEBUG Processing 361/1013 atomic regions from SNP 108229 to 108829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,349 DEBUG Processing 534/885 atomic regions from SNP 160177 to 160777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,351 DEBUG Processing 349/1125 atomic regions from SNP 104512 to 105112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,460 DEBUG Processing 523/848 atomic regions from SNP 156603 to 157203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,476 DEBUG Processing 467/468 atomic regions from SNP 139862 to 140462 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,479 DEBUG Processing 289/642 atomic regions from SNP 86441 to 87041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,592 DEBUG Processing 362/1013 atomic regions from SNP 108529 to 109129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,599 DEBUG Processing 535/885 atomic regions from SNP 160477 to 161077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,630 DEBUG Processing 350/1125 atomic regions from SNP 104812 to 105412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,702 DEBUG Processing 524/848 atomic regions from SNP 156903 to 157503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,730 DEBUG Processing 468/468 atomic regions from SNP 140162 to 140762 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,741 DEBUG Processing 290/642 atomic regions from SNP 86741 to 87341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,847 DEBUG Processing 536/885 atomic regions from SNP 160777 to 161377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,875 DEBUG Processing 363/1013 atomic regions from SNP 108829 to 109429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,880 DEBUG Unique SNPs positions in subchromosome 4: 140763 2025-01-31 09:46:23,905 DEBUG Processing 351/1125 atomic regions from SNP 105112 to 105712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,943 DEBUG Processing 525/848 atomic regions from SNP 157203 to 157803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,001 DEBUG Processing 291/642 atomic regions from SNP 87041 to 87641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,098 DEBUG Processing 537/885 atomic regions from SNP 161077 to 161677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,154 DEBUG Processing 364/1013 atomic regions from SNP 109129 to 109729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,182 DEBUG Processing 352/1125 atomic regions from SNP 105412 to 106012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,184 DEBUG Processing 526/848 atomic regions from SNP 157503 to 158103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,261 DEBUG Processing 292/642 atomic regions from SNP 87341 to 87941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,357 DEBUG Processing 538/885 atomic regions from SNP 161377 to 161977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,426 DEBUG Processing 527/848 atomic regions from SNP 157803 to 158403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,436 DEBUG Processing 365/1013 atomic regions from SNP 109429 to 110029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,480 DEBUG Processing 353/1125 atomic regions from SNP 105712 to 106312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,516 DEBUG Processing 293/642 atomic regions from SNP 87641 to 88241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,611 DEBUG Processing 539/885 atomic regions from SNP 161677 to 162277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,668 DEBUG Processing 528/848 atomic regions from SNP 158103 to 158703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,722 DEBUG Processing 366/1013 atomic regions from SNP 109729 to 110329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,776 DEBUG Processing 294/642 atomic regions from SNP 87941 to 88541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,793 DEBUG Processing 354/1125 atomic regions from SNP 106012 to 106612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,864 DEBUG Processing 540/885 atomic regions from SNP 161977 to 162577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,911 DEBUG Processing 529/848 atomic regions from SNP 158403 to 159003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,004 DEBUG Processing 367/1013 atomic regions from SNP 110029 to 110629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,028 DEBUG Processing 295/642 atomic regions from SNP 88241 to 88841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,067 DEBUG Processing 355/1125 atomic regions from SNP 106312 to 106912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,110 DEBUG Processing 541/885 atomic regions from SNP 162277 to 162877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,161 DEBUG Processing 530/848 atomic regions from SNP 158703 to 159303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,285 DEBUG Processing 296/642 atomic regions from SNP 88541 to 89141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,291 DEBUG Processing 368/1013 atomic regions from SNP 110329 to 110929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,356 DEBUG Processing 542/885 atomic regions from SNP 162577 to 163177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,368 DEBUG Processing 356/1125 atomic regions from SNP 106612 to 107212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,410 DEBUG Processing 531/848 atomic regions from SNP 159003 to 159603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,545 DEBUG Processing 297/642 atomic regions from SNP 88841 to 89441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,575 DEBUG Processing 369/1013 atomic regions from SNP 110629 to 111229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,604 DEBUG Subchromosome time: 135.84319853037596, subchromosome SNPs: 140763 2025-01-31 09:46:25,623 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:25,634 DEBUG Processing 543/885 atomic regions from SNP 162877 to 163477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,660 DEBUG Processing 532/848 atomic regions from SNP 159303 to 159903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,674 DEBUG Processing 357/1125 atomic regions from SNP 106912 to 107512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,800 DEBUG Processing 298/642 atomic regions from SNP 89141 to 89741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,860 DEBUG Processing 370/1013 atomic regions from SNP 110929 to 111529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,905 DEBUG Processing 533/848 atomic regions from SNP 159603 to 160203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,919 DEBUG Processing 544/885 atomic regions from SNP 163177 to 163777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,970 DEBUG Processing 358/1125 atomic regions from SNP 107212 to 107812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,050 DEBUG Processing 299/642 atomic regions from SNP 89441 to 90041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,144 DEBUG Processing 371/1013 atomic regions from SNP 111229 to 111829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,171 DEBUG Processing 534/848 atomic regions from SNP 159903 to 160503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,195 DEBUG Processing 545/885 atomic regions from SNP 163477 to 164077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,264 DEBUG Processing 359/1125 atomic regions from SNP 107512 to 108112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,303 DEBUG Processing 300/642 atomic regions from SNP 89741 to 90341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,431 DEBUG Processing 535/848 atomic regions from SNP 160203 to 160803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,431 DEBUG Processing 372/1013 atomic regions from SNP 111529 to 112129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,479 DEBUG Processing 546/885 atomic regions from SNP 163777 to 164377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,553 DEBUG Processing 301/642 atomic regions from SNP 90041 to 90641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,570 DEBUG Processing 360/1125 atomic regions from SNP 107812 to 108412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,682 DEBUG Processing 536/848 atomic regions from SNP 160503 to 161103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,712 DEBUG Processing 373/1013 atomic regions from SNP 111829 to 112429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,748 DEBUG Processing 547/885 atomic regions from SNP 164077 to 164677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,799 DEBUG Processing 302/642 atomic regions from SNP 90341 to 90941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,850 DEBUG Processing 361/1125 atomic regions from SNP 108112 to 108712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,943 DEBUG Processing 537/848 atomic regions from SNP 160803 to 161403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,991 DEBUG Processing 374/1013 atomic regions from SNP 112129 to 112729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,011 DEBUG Processing 548/885 atomic regions from SNP 164377 to 164977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,052 DEBUG Processing 303/642 atomic regions from SNP 90641 to 91241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,126 DEBUG Processing 362/1125 atomic regions from SNP 108412 to 109012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,201 DEBUG Processing 538/848 atomic regions from SNP 161103 to 161703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,274 DEBUG Processing 375/1013 atomic regions from SNP 112429 to 113029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,296 DEBUG Processing 549/885 atomic regions from SNP 164677 to 165277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,327 DEBUG Processing 304/642 atomic regions from SNP 90941 to 91541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,404 DEBUG Processing 363/1125 atomic regions from SNP 108712 to 109312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,453 DEBUG Processing 539/848 atomic regions from SNP 161403 to 162003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,560 DEBUG Processing 376/1013 atomic regions from SNP 112729 to 113329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,583 DEBUG Processing 550/885 atomic regions from SNP 164977 to 165577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,612 DEBUG Processing 305/642 atomic regions from SNP 91241 to 91841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,677 DEBUG Processing 364/1125 atomic regions from SNP 109012 to 109612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,692 DEBUG Processing 540/848 atomic regions from SNP 161703 to 162303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,848 DEBUG Processing 377/1013 atomic regions from SNP 113029 to 113629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,853 DEBUG Processing 551/885 atomic regions from SNP 165277 to 165877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,874 DEBUG Processing 306/642 atomic regions from SNP 91541 to 92141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,938 DEBUG Processing 541/848 atomic regions from SNP 162003 to 162603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,954 DEBUG Processing 365/1125 atomic regions from SNP 109312 to 109912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,114 DEBUG Processing 552/885 atomic regions from SNP 165577 to 166177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,138 DEBUG Processing 307/642 atomic regions from SNP 91841 to 92441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,139 DEBUG Processing 378/1013 atomic regions from SNP 113329 to 113929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,185 DEBUG Processing 542/848 atomic regions from SNP 162303 to 162903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,236 DEBUG Processing 366/1125 atomic regions from SNP 109612 to 110212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,384 DEBUG Processing 553/885 atomic regions from SNP 165877 to 166477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,409 DEBUG Processing 308/642 atomic regions from SNP 92141 to 92741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,433 DEBUG Processing 543/848 atomic regions from SNP 162603 to 163203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,439 DEBUG Processing 379/1013 atomic regions from SNP 113629 to 114229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,515 DEBUG Processing 367/1125 atomic regions from SNP 109912 to 110512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,663 DEBUG Processing 309/642 atomic regions from SNP 92441 to 93041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,672 DEBUG Processing 554/885 atomic regions from SNP 166177 to 166777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,685 DEBUG Processing 544/848 atomic regions from SNP 162903 to 163503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,719 DEBUG Processing 380/1013 atomic regions from SNP 113929 to 114529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,792 DEBUG Processing 368/1125 atomic regions from SNP 110212 to 110812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,919 DEBUG Processing 310/642 atomic regions from SNP 92741 to 93341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,935 DEBUG Processing 545/848 atomic regions from SNP 163203 to 163803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,952 DEBUG Processing 555/885 atomic regions from SNP 166477 to 167077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,997 DEBUG Processing 381/1013 atomic regions from SNP 114229 to 114829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,089 DEBUG Processing 369/1125 atomic regions from SNP 110512 to 111112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,179 DEBUG Processing 311/642 atomic regions from SNP 93041 to 93641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,186 DEBUG Processing 546/848 atomic regions from SNP 163503 to 164103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,208 DEBUG Processing 556/885 atomic regions from SNP 166777 to 167377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,282 DEBUG Processing 382/1013 atomic regions from SNP 114529 to 115129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,385 DEBUG Processing 370/1125 atomic regions from SNP 110812 to 111412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,437 DEBUG Processing 547/848 atomic regions from SNP 163803 to 164403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,441 DEBUG Processing 312/642 atomic regions from SNP 93341 to 93941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,470 DEBUG Processing 557/885 atomic regions from SNP 167077 to 167677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,562 DEBUG Processing 383/1013 atomic regions from SNP 114829 to 115429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,660 DEBUG Processing 371/1125 atomic regions from SNP 111112 to 111712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,680 DEBUG Processing 548/848 atomic regions from SNP 164103 to 164703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,686 DEBUG Processing 313/642 atomic regions from SNP 93641 to 94241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,726 DEBUG Processing 558/885 atomic regions from SNP 167377 to 167977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,838 DEBUG Processing 384/1013 atomic regions from SNP 115129 to 115729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,920 DEBUG Processing 549/848 atomic regions from SNP 164403 to 165003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,927 DEBUG Processing 314/642 atomic regions from SNP 93941 to 94541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,936 DEBUG Processing 372/1125 atomic regions from SNP 111412 to 112012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,001 DEBUG Processing 559/885 atomic regions from SNP 167677 to 168277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,118 DEBUG Processing 385/1013 atomic regions from SNP 115429 to 116029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,159 DEBUG Processing 315/642 atomic regions from SNP 94241 to 94841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,159 DEBUG Processing 550/848 atomic regions from SNP 164703 to 165303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,210 DEBUG Processing 373/1125 atomic regions from SNP 111712 to 112312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,278 DEBUG Processing 560/885 atomic regions from SNP 167977 to 168577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,399 DEBUG Processing 551/848 atomic regions from SNP 165003 to 165603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,401 DEBUG Processing 386/1013 atomic regions from SNP 115729 to 116329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,406 DEBUG Processing 316/642 atomic regions from SNP 94541 to 95141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,479 DEBUG Processing 374/1125 atomic regions from SNP 112012 to 112612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,548 DEBUG Processing 561/885 atomic regions from SNP 168277 to 168877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,645 DEBUG Processing 552/848 atomic regions from SNP 165303 to 165903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,662 DEBUG Processing 317/642 atomic regions from SNP 94841 to 95441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,689 DEBUG Processing 387/1013 atomic regions from SNP 116029 to 116629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,749 DEBUG Processing 375/1125 atomic regions from SNP 112312 to 112912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,807 DEBUG Processing 562/885 atomic regions from SNP 168577 to 169177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,888 DEBUG Processing 553/848 atomic regions from SNP 165603 to 166203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,917 DEBUG Processing 318/642 atomic regions from SNP 95141 to 95741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,970 DEBUG Processing 388/1013 atomic regions from SNP 116329 to 116929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,015 DEBUG Processing 376/1125 atomic regions from SNP 112612 to 113212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,067 DEBUG Processing 563/885 atomic regions from SNP 168877 to 169477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,128 DEBUG Processing 554/848 atomic regions from SNP 165903 to 166503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,173 DEBUG Processing 319/642 atomic regions from SNP 95441 to 96041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,247 DEBUG Processing 389/1013 atomic regions from SNP 116629 to 117229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,286 DEBUG Processing 377/1125 atomic regions from SNP 112912 to 113512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,344 DEBUG Processing 564/885 atomic regions from SNP 169177 to 169777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,374 DEBUG Processing 555/848 atomic regions from SNP 166203 to 166803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,419 DEBUG Processing 320/642 atomic regions from SNP 95741 to 96341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,518 DEBUG Processing 390/1013 atomic regions from SNP 116929 to 117529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,555 DEBUG Processing 378/1125 atomic regions from SNP 113212 to 113812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,623 DEBUG Processing 565/885 atomic regions from SNP 169477 to 170077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,646 DEBUG Processing 556/848 atomic regions from SNP 166503 to 167103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,670 DEBUG Processing 321/642 atomic regions from SNP 96041 to 96641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,786 DEBUG Processing 391/1013 atomic regions from SNP 117229 to 117829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,822 DEBUG Processing 379/1125 atomic regions from SNP 113512 to 114112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,883 DEBUG Processing 566/885 atomic regions from SNP 169777 to 170377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,922 DEBUG Processing 322/642 atomic regions from SNP 96341 to 96941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,923 DEBUG Processing 557/848 atomic regions from SNP 166803 to 167403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,085 DEBUG Processing 392/1013 atomic regions from SNP 117529 to 118129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,088 DEBUG Processing 380/1125 atomic regions from SNP 113812 to 114412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,152 DEBUG Processing 567/885 atomic regions from SNP 170077 to 170677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,176 DEBUG Processing 323/642 atomic regions from SNP 96641 to 97241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,204 DEBUG Processing 558/848 atomic regions from SNP 167103 to 167703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,355 DEBUG Processing 381/1125 atomic regions from SNP 114112 to 114712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,381 DEBUG Processing 393/1013 atomic regions from SNP 117829 to 118429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,422 DEBUG Processing 568/885 atomic regions from SNP 170377 to 170977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,424 DEBUG Processing 324/642 atomic regions from SNP 96941 to 97541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,467 DEBUG Processing 559/848 atomic regions from SNP 167403 to 168003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,621 DEBUG Processing 382/1125 atomic regions from SNP 114412 to 115012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,656 DEBUG Processing 394/1013 atomic regions from SNP 118129 to 118729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,688 DEBUG Processing 325/642 atomic regions from SNP 97241 to 97841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,698 DEBUG Processing 569/885 atomic regions from SNP 170677 to 171277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,703 DEBUG Processing 560/848 atomic regions from SNP 167703 to 168303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,889 DEBUG Processing 383/1125 atomic regions from SNP 114712 to 115312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,931 DEBUG Processing 395/1013 atomic regions from SNP 118429 to 119029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,946 DEBUG Processing 561/848 atomic regions from SNP 168003 to 168603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,961 DEBUG Processing 326/642 atomic regions from SNP 97541 to 98141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,982 DEBUG Processing 570/885 atomic regions from SNP 170977 to 171577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,167 DEBUG Processing 384/1125 atomic regions from SNP 115012 to 115612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,195 DEBUG Processing 562/848 atomic regions from SNP 168303 to 168903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,211 DEBUG Processing 396/1013 atomic regions from SNP 118729 to 119329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,240 DEBUG Processing 327/642 atomic regions from SNP 97841 to 98441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,268 DEBUG Processing 571/885 atomic regions from SNP 171277 to 171877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,436 DEBUG Processing 563/848 atomic regions from SNP 168603 to 169203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,442 DEBUG Processing 385/1125 atomic regions from SNP 115312 to 115912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,488 DEBUG Processing 397/1013 atomic regions from SNP 119029 to 119629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,504 DEBUG Processing 328/642 atomic regions from SNP 98141 to 98741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,537 DEBUG Processing 572/885 atomic regions from SNP 171577 to 172177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,679 DEBUG Processing 564/848 atomic regions from SNP 168903 to 169503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,723 DEBUG Processing 386/1125 atomic regions from SNP 115612 to 116212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,757 DEBUG Processing 329/642 atomic regions from SNP 98441 to 99041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,778 DEBUG Processing 398/1013 atomic regions from SNP 119329 to 119929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,782 DEBUG Processing 573/885 atomic regions from SNP 171877 to 172477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,918 DEBUG Processing 565/848 atomic regions from SNP 169203 to 169803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,005 DEBUG Processing 387/1125 atomic regions from SNP 115912 to 116512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,008 DEBUG Processing 330/642 atomic regions from SNP 98741 to 99341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,048 DEBUG Processing 574/885 atomic regions from SNP 172177 to 172777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,073 DEBUG Processing 399/1013 atomic regions from SNP 119629 to 120229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,131 DEBUG Segmenting atomic regions: 2025-01-31 09:46:34,165 DEBUG Processing 566/848 atomic regions from SNP 169503 to 170103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,239 DEBUG Processing 1/230 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,255 DEBUG Processing 331/642 atomic regions from SNP 99041 to 99641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,294 DEBUG Processing 388/1125 atomic regions from SNP 116212 to 116812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,337 DEBUG Processing 575/885 atomic regions from SNP 172477 to 173077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,382 DEBUG Processing 400/1013 atomic regions from SNP 119929 to 120529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,430 DEBUG Processing 567/848 atomic regions from SNP 169803 to 170403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,461 DEBUG Processing 2/230 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,496 DEBUG Processing 332/642 atomic regions from SNP 99341 to 99941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,582 DEBUG Processing 389/1125 atomic regions from SNP 116512 to 117112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,630 DEBUG Processing 576/885 atomic regions from SNP 172777 to 173377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,670 DEBUG Processing 401/1013 atomic regions from SNP 120229 to 120829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,692 DEBUG Processing 568/848 atomic regions from SNP 170103 to 170703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,696 DEBUG Processing 3/230 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,741 DEBUG Processing 333/642 atomic regions from SNP 99641 to 100241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,868 DEBUG Processing 390/1125 atomic regions from SNP 116812 to 117412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,923 DEBUG Processing 577/885 atomic regions from SNP 173077 to 173677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,935 DEBUG Processing 569/848 atomic regions from SNP 170403 to 171003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,941 DEBUG Processing 4/230 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:34,986 DEBUG Processing 334/642 atomic regions from SNP 99941 to 100541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,992 DEBUG Processing 402/1013 atomic regions from SNP 120529 to 121129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,152 DEBUG Processing 391/1125 atomic regions from SNP 117112 to 117712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,187 DEBUG Processing 5/230 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,192 DEBUG Processing 570/848 atomic regions from SNP 170703 to 171303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,193 DEBUG Processing 578/885 atomic regions from SNP 173377 to 173977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,246 DEBUG Processing 335/642 atomic regions from SNP 100241 to 100841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,292 DEBUG Processing 403/1013 atomic regions from SNP 120829 to 121429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,428 DEBUG Processing 6/230 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,433 DEBUG Processing 392/1125 atomic regions from SNP 117412 to 118012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,438 DEBUG Processing 571/848 atomic regions from SNP 171003 to 171603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,445 DEBUG Processing 579/885 atomic regions from SNP 173677 to 174277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,525 DEBUG Processing 336/642 atomic regions from SNP 100541 to 101141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,575 DEBUG Processing 404/1013 atomic regions from SNP 121129 to 121729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,660 DEBUG Processing 7/230 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,679 DEBUG Processing 572/848 atomic regions from SNP 171303 to 171903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,691 DEBUG Processing 580/885 atomic regions from SNP 173977 to 174577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,709 DEBUG Processing 393/1125 atomic regions from SNP 117712 to 118312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,790 DEBUG Processing 337/642 atomic regions from SNP 100841 to 101441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,855 DEBUG Processing 405/1013 atomic regions from SNP 121429 to 122029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,890 DEBUG Processing 8/230 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:35,915 DEBUG Processing 573/848 atomic regions from SNP 171603 to 172203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,935 DEBUG Processing 581/885 atomic regions from SNP 174277 to 174877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,980 DEBUG Processing 394/1125 atomic regions from SNP 118012 to 118612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,025 DEBUG Processing 338/642 atomic regions from SNP 101141 to 101741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,122 DEBUG Processing 9/230 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,129 DEBUG Processing 406/1013 atomic regions from SNP 121729 to 122329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,166 DEBUG Processing 574/848 atomic regions from SNP 171903 to 172503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,174 DEBUG Processing 582/885 atomic regions from SNP 174577 to 175177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,248 DEBUG Processing 395/1125 atomic regions from SNP 118312 to 118912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,265 DEBUG Processing 339/642 atomic regions from SNP 101441 to 102041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,355 DEBUG Processing 10/230 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,406 DEBUG Processing 575/848 atomic regions from SNP 172203 to 172803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,413 DEBUG Processing 407/1013 atomic regions from SNP 122029 to 122629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,421 DEBUG Processing 583/885 atomic regions from SNP 174877 to 175477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,499 DEBUG Processing 340/642 atomic regions from SNP 101741 to 102341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,519 DEBUG Processing 396/1125 atomic regions from SNP 118612 to 119212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,586 DEBUG Processing 11/230 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,659 DEBUG Processing 576/848 atomic regions from SNP 172503 to 173103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,674 DEBUG Processing 584/885 atomic regions from SNP 175177 to 175777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,690 DEBUG Processing 408/1013 atomic regions from SNP 122329 to 122929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,739 DEBUG Processing 341/642 atomic regions from SNP 102041 to 102641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,791 DEBUG Processing 397/1125 atomic regions from SNP 118912 to 119512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,810 DEBUG Processing 12/230 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,907 DEBUG Processing 577/848 atomic regions from SNP 172803 to 173403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,947 DEBUG Processing 585/885 atomic regions from SNP 175477 to 176077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,964 DEBUG Processing 409/1013 atomic regions from SNP 122629 to 123229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,985 DEBUG Processing 342/642 atomic regions from SNP 102341 to 102941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,038 DEBUG Processing 13/230 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,060 DEBUG Processing 398/1125 atomic regions from SNP 119212 to 119812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,147 DEBUG Processing 578/848 atomic regions from SNP 173103 to 173703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,220 DEBUG Processing 586/885 atomic regions from SNP 175777 to 176377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,240 DEBUG Processing 343/642 atomic regions from SNP 102641 to 103241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,241 DEBUG Processing 410/1013 atomic regions from SNP 122929 to 123529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,273 DEBUG Processing 14/230 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,334 DEBUG Processing 399/1125 atomic regions from SNP 119512 to 120112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,393 DEBUG Processing 579/848 atomic regions from SNP 173403 to 174003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,482 DEBUG Processing 344/642 atomic regions from SNP 102941 to 103541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,485 DEBUG Processing 587/885 atomic regions from SNP 176077 to 176677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,503 DEBUG Processing 15/230 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,513 DEBUG Processing 411/1013 atomic regions from SNP 123229 to 123829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,613 DEBUG Processing 400/1125 atomic regions from SNP 119812 to 120412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,636 DEBUG Processing 580/848 atomic regions from SNP 173703 to 174303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,725 DEBUG Processing 345/642 atomic regions from SNP 103241 to 103841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,737 DEBUG Processing 16/230 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,755 DEBUG Processing 588/885 atomic regions from SNP 176377 to 176977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,823 DEBUG Processing 412/1013 atomic regions from SNP 123529 to 124129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,904 DEBUG Processing 401/1125 atomic regions from SNP 120112 to 120712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,911 DEBUG Processing 581/848 atomic regions from SNP 174003 to 174603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,967 DEBUG Processing 17/230 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,967 DEBUG Processing 346/642 atomic regions from SNP 103541 to 104141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,033 DEBUG Processing 589/885 atomic regions from SNP 176677 to 177277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,110 DEBUG Processing 413/1013 atomic regions from SNP 123829 to 124429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,183 DEBUG Processing 582/848 atomic regions from SNP 174303 to 174903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,202 DEBUG Processing 18/230 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,210 DEBUG Processing 347/642 atomic regions from SNP 103841 to 104441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,222 DEBUG Processing 402/1125 atomic regions from SNP 120412 to 121012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,313 DEBUG Processing 590/885 atomic regions from SNP 176977 to 177577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,413 DEBUG Processing 414/1013 atomic regions from SNP 124129 to 124729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,434 DEBUG Processing 583/848 atomic regions from SNP 174603 to 175203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,444 DEBUG Processing 19/230 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,467 DEBUG Processing 348/642 atomic regions from SNP 104141 to 104741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,517 DEBUG Processing 403/1125 atomic regions from SNP 120712 to 121312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,597 DEBUG Processing 591/885 atomic regions from SNP 177277 to 177877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,682 DEBUG Processing 20/230 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,695 DEBUG Processing 584/848 atomic regions from SNP 174903 to 175503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,715 DEBUG Processing 349/642 atomic regions from SNP 104441 to 105041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,718 DEBUG Processing 415/1013 atomic regions from SNP 124429 to 125029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,798 DEBUG Processing 404/1125 atomic regions from SNP 121012 to 121612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,879 DEBUG Processing 592/885 atomic regions from SNP 177577 to 178177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,915 DEBUG Processing 21/230 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,942 DEBUG Processing 585/848 atomic regions from SNP 175203 to 175803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,961 DEBUG Processing 350/642 atomic regions from SNP 104741 to 105341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,017 DEBUG Processing 416/1013 atomic regions from SNP 124729 to 125329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,081 DEBUG Processing 405/1125 atomic regions from SNP 121312 to 121912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,143 DEBUG Processing 22/230 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,152 DEBUG Processing 593/885 atomic regions from SNP 177877 to 178477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,204 DEBUG Processing 586/848 atomic regions from SNP 175503 to 176103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,209 DEBUG Processing 351/642 atomic regions from SNP 105041 to 105641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,284 DEBUG Processing 417/1013 atomic regions from SNP 125029 to 125629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,348 DEBUG Processing 406/1125 atomic regions from SNP 121612 to 122212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,374 DEBUG Processing 23/230 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,428 DEBUG Processing 594/885 atomic regions from SNP 178177 to 178777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,447 DEBUG Processing 587/848 atomic regions from SNP 175803 to 176403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,455 DEBUG Processing 352/642 atomic regions from SNP 105341 to 105941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,590 DEBUG Processing 418/1013 atomic regions from SNP 125329 to 125929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,600 DEBUG Processing 24/230 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,626 DEBUG Processing 407/1125 atomic regions from SNP 121912 to 122512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,690 DEBUG Processing 588/848 atomic regions from SNP 176103 to 176703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,704 DEBUG Processing 595/885 atomic regions from SNP 178477 to 179077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,705 DEBUG Processing 353/642 atomic regions from SNP 105641 to 106241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,829 DEBUG Processing 25/230 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,860 DEBUG Processing 419/1013 atomic regions from SNP 125629 to 126229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,887 DEBUG Processing 408/1125 atomic regions from SNP 122212 to 122812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,931 DEBUG Processing 589/848 atomic regions from SNP 176403 to 177003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,945 DEBUG Processing 354/642 atomic regions from SNP 105941 to 106541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,973 DEBUG Processing 596/885 atomic regions from SNP 178777 to 179377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,061 DEBUG Processing 26/230 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,131 DEBUG Processing 420/1013 atomic regions from SNP 125929 to 126529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,155 DEBUG Processing 409/1125 atomic regions from SNP 122512 to 123112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,172 DEBUG Processing 590/848 atomic regions from SNP 176703 to 177303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,183 DEBUG Processing 355/642 atomic regions from SNP 106241 to 106841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,218 DEBUG Processing 597/885 atomic regions from SNP 179077 to 179677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,291 DEBUG Processing 27/230 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,408 DEBUG Processing 421/1013 atomic regions from SNP 126229 to 126829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,413 DEBUG Processing 591/848 atomic regions from SNP 177003 to 177603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,425 DEBUG Processing 410/1125 atomic regions from SNP 122812 to 123412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,429 DEBUG Processing 356/642 atomic regions from SNP 106541 to 107141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,461 DEBUG Processing 598/885 atomic regions from SNP 179377 to 179977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,518 DEBUG Processing 28/230 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,656 DEBUG Processing 592/848 atomic regions from SNP 177303 to 177903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,689 DEBUG Processing 422/1013 atomic regions from SNP 126529 to 127129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,694 DEBUG Processing 357/642 atomic regions from SNP 106841 to 107441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,704 DEBUG Processing 411/1125 atomic regions from SNP 123112 to 123712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,711 DEBUG Processing 599/885 atomic regions from SNP 179677 to 180277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,746 DEBUG Processing 29/230 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,920 DEBUG Processing 593/848 atomic regions from SNP 177603 to 178203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,955 DEBUG Processing 600/885 atomic regions from SNP 179977 to 180577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,967 DEBUG Processing 358/642 atomic regions from SNP 107141 to 107741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,968 DEBUG Processing 423/1013 atomic regions from SNP 126829 to 127429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,983 DEBUG Processing 30/230 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,983 DEBUG Processing 412/1125 atomic regions from SNP 123412 to 124012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,190 DEBUG Processing 594/848 atomic regions from SNP 177903 to 178503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,195 DEBUG Processing 601/885 atomic regions from SNP 180277 to 180877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,229 DEBUG Processing 31/230 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,253 DEBUG Processing 424/1013 atomic regions from SNP 127129 to 127729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,253 DEBUG Processing 359/642 atomic regions from SNP 107441 to 108041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,277 DEBUG Processing 413/1125 atomic regions from SNP 123712 to 124312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,435 DEBUG Processing 602/885 atomic regions from SNP 180577 to 181177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,460 DEBUG Processing 595/848 atomic regions from SNP 178203 to 178803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,467 DEBUG Processing 32/230 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,537 DEBUG Processing 425/1013 atomic regions from SNP 127429 to 128029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,538 DEBUG Processing 360/642 atomic regions from SNP 107741 to 108341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,576 DEBUG Processing 414/1125 atomic regions from SNP 124012 to 124612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,677 DEBUG Processing 603/885 atomic regions from SNP 180877 to 181477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,696 DEBUG Processing 33/230 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,730 DEBUG Processing 596/848 atomic regions from SNP 178503 to 179103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,814 DEBUG Processing 426/1013 atomic regions from SNP 127729 to 128329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,819 DEBUG Processing 361/642 atomic regions from SNP 108041 to 108641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,886 DEBUG Processing 415/1125 atomic regions from SNP 124312 to 124912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,917 DEBUG Processing 604/885 atomic regions from SNP 181177 to 181777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,924 DEBUG Processing 34/230 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,995 DEBUG Processing 597/848 atomic regions from SNP 178803 to 179403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,092 DEBUG Processing 362/642 atomic regions from SNP 108341 to 108941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,093 DEBUG Processing 427/1013 atomic regions from SNP 128029 to 128629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,167 DEBUG Processing 35/230 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,170 DEBUG Processing 605/885 atomic regions from SNP 181477 to 182077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,199 DEBUG Processing 416/1125 atomic regions from SNP 124612 to 125212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,261 DEBUG Processing 598/848 atomic regions from SNP 179103 to 179703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,358 DEBUG Processing 363/642 atomic regions from SNP 108641 to 109241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,363 DEBUG Processing 428/1013 atomic regions from SNP 128329 to 128929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,422 DEBUG Processing 36/230 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,426 DEBUG Processing 606/885 atomic regions from SNP 181777 to 182377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,507 DEBUG Processing 599/848 atomic regions from SNP 179403 to 180003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,518 DEBUG Processing 417/1125 atomic regions from SNP 124912 to 125512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,626 DEBUG Processing 364/642 atomic regions from SNP 108941 to 109541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,660 DEBUG Processing 429/1013 atomic regions from SNP 128629 to 129229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,661 DEBUG Processing 37/230 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,673 DEBUG Processing 607/885 atomic regions from SNP 182077 to 182677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,767 DEBUG Processing 600/848 atomic regions from SNP 179703 to 180303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,825 DEBUG Processing 418/1125 atomic regions from SNP 125212 to 125812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,897 DEBUG Processing 38/230 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,900 DEBUG Processing 365/642 atomic regions from SNP 109241 to 109841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,920 DEBUG Processing 608/885 atomic regions from SNP 182377 to 182977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,943 DEBUG Processing 430/1013 atomic regions from SNP 128929 to 129529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,023 DEBUG Processing 601/848 atomic regions from SNP 180003 to 180603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,126 DEBUG Processing 419/1125 atomic regions from SNP 125512 to 126112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,131 DEBUG Processing 39/230 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,166 DEBUG Processing 609/885 atomic regions from SNP 182677 to 183277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,183 DEBUG Processing 366/642 atomic regions from SNP 109541 to 110141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,220 DEBUG Processing 431/1013 atomic regions from SNP 129229 to 129829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,254 DEBUG Processing 602/848 atomic regions from SNP 180303 to 180903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,368 DEBUG Processing 40/230 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,420 DEBUG Processing 610/885 atomic regions from SNP 182977 to 183577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,440 DEBUG Processing 420/1125 atomic regions from SNP 125812 to 126412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,461 DEBUG Processing 367/642 atomic regions from SNP 109841 to 110441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,498 DEBUG Processing 603/848 atomic regions from SNP 180603 to 181203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,499 DEBUG Processing 432/1013 atomic regions from SNP 129529 to 130129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,596 DEBUG Processing 41/230 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,664 DEBUG Processing 611/885 atomic regions from SNP 183277 to 183877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,723 DEBUG Processing 368/642 atomic regions from SNP 110141 to 110741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,742 DEBUG Processing 604/848 atomic regions from SNP 180903 to 181503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,753 DEBUG Processing 421/1125 atomic regions from SNP 126112 to 126712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,786 DEBUG Processing 433/1013 atomic regions from SNP 129829 to 130429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,827 DEBUG Processing 42/230 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,901 DEBUG Processing 612/885 atomic regions from SNP 183577 to 184177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,977 DEBUG Processing 369/642 atomic regions from SNP 110441 to 111041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,990 DEBUG Processing 605/848 atomic regions from SNP 181203 to 181803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,057 DEBUG Processing 422/1125 atomic regions from SNP 126412 to 127012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,070 DEBUG Processing 43/230 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,071 DEBUG Processing 434/1013 atomic regions from SNP 130129 to 130729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,136 DEBUG Processing 613/885 atomic regions from SNP 183877 to 184477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,222 DEBUG Processing 370/642 atomic regions from SNP 110741 to 111341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,234 DEBUG Processing 606/848 atomic regions from SNP 181503 to 182103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,311 DEBUG Processing 44/230 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,341 DEBUG Processing 423/1125 atomic regions from SNP 126712 to 127312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,379 DEBUG Processing 614/885 atomic regions from SNP 184177 to 184777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,381 DEBUG Processing 435/1013 atomic regions from SNP 130429 to 131029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,468 DEBUG Processing 371/642 atomic regions from SNP 111041 to 111641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,504 DEBUG Processing 607/848 atomic regions from SNP 181803 to 182403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,550 DEBUG Processing 45/230 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,630 DEBUG Processing 424/1125 atomic regions from SNP 127012 to 127612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,635 DEBUG Processing 615/885 atomic regions from SNP 184477 to 185077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,658 DEBUG Processing 436/1013 atomic regions from SNP 130729 to 131329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,730 DEBUG Processing 372/642 atomic regions from SNP 111341 to 111941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,757 DEBUG Processing 608/848 atomic regions from SNP 182103 to 182703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,806 DEBUG Processing 46/230 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,894 DEBUG Processing 616/885 atomic regions from SNP 184777 to 185377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,916 DEBUG Processing 425/1125 atomic regions from SNP 127312 to 127912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,927 DEBUG Processing 437/1013 atomic regions from SNP 131029 to 131629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,976 DEBUG Processing 373/642 atomic regions from SNP 111641 to 112241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,987 DEBUG Processing 609/848 atomic regions from SNP 182403 to 183003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,028 DEBUG Processing 47/230 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,147 DEBUG Processing 617/885 atomic regions from SNP 185077 to 185677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,198 DEBUG Processing 438/1013 atomic regions from SNP 131329 to 131929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,201 DEBUG Processing 426/1125 atomic regions from SNP 127612 to 128212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,224 DEBUG Processing 610/848 atomic regions from SNP 182703 to 183303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,240 DEBUG Processing 374/642 atomic regions from SNP 111941 to 112541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,259 DEBUG Processing 48/230 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,388 DEBUG Processing 618/885 atomic regions from SNP 185377 to 185977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,468 DEBUG Processing 439/1013 atomic regions from SNP 131629 to 132229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,473 DEBUG Processing 611/848 atomic regions from SNP 183003 to 183603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,482 DEBUG Processing 427/1125 atomic regions from SNP 127912 to 128512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,495 DEBUG Processing 49/230 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,511 DEBUG Processing 375/642 atomic regions from SNP 112241 to 112841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,624 DEBUG Processing 619/885 atomic regions from SNP 185677 to 186277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,725 DEBUG Processing 612/848 atomic regions from SNP 183303 to 183903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,739 DEBUG Processing 50/230 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,756 DEBUG Processing 440/1013 atomic regions from SNP 131929 to 132529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,767 DEBUG Processing 428/1125 atomic regions from SNP 128212 to 128812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,789 DEBUG Processing 376/642 atomic regions from SNP 112541 to 113141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,854 DEBUG Processing 620/885 atomic regions from SNP 185977 to 186577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,961 DEBUG Processing 613/848 atomic regions from SNP 183603 to 184203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,972 DEBUG Processing 51/230 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,047 DEBUG Processing 429/1125 atomic regions from SNP 128512 to 129112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,049 DEBUG Processing 441/1013 atomic regions from SNP 132229 to 132829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,066 DEBUG Processing 377/642 atomic regions from SNP 112841 to 113441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,093 DEBUG Processing 621/885 atomic regions from SNP 186277 to 186877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,196 DEBUG Processing 614/848 atomic regions from SNP 183903 to 184503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,197 DEBUG Processing 52/230 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,316 DEBUG Processing 378/642 atomic regions from SNP 113141 to 113741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,326 DEBUG Processing 442/1013 atomic regions from SNP 132529 to 133129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,329 DEBUG Processing 430/1125 atomic regions from SNP 128812 to 129412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,342 DEBUG Processing 622/885 atomic regions from SNP 186577 to 187177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,425 DEBUG Processing 53/230 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,436 DEBUG Processing 615/848 atomic regions from SNP 184203 to 184803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,560 DEBUG Processing 379/642 atomic regions from SNP 113441 to 114041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,587 DEBUG Processing 623/885 atomic regions from SNP 186877 to 187477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,594 DEBUG Processing 443/1013 atomic regions from SNP 132829 to 133429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,604 DEBUG Processing 431/1125 atomic regions from SNP 129112 to 129712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,653 DEBUG Processing 54/230 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,700 DEBUG Processing 616/848 atomic regions from SNP 184503 to 185103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,805 DEBUG Processing 380/642 atomic regions from SNP 113741 to 114341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,823 DEBUG Processing 624/885 atomic regions from SNP 187177 to 187777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,865 DEBUG Processing 444/1013 atomic regions from SNP 133129 to 133729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,874 DEBUG Processing 432/1125 atomic regions from SNP 129412 to 130012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,880 DEBUG Processing 55/230 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,975 DEBUG Processing 617/848 atomic regions from SNP 184803 to 185403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,054 DEBUG Processing 381/642 atomic regions from SNP 114041 to 114641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,060 DEBUG Processing 625/885 atomic regions from SNP 187477 to 188077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,126 DEBUG Processing 56/230 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,141 DEBUG Processing 445/1013 atomic regions from SNP 133429 to 134029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,145 DEBUG Processing 433/1125 atomic regions from SNP 129712 to 130312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,253 DEBUG Processing 618/848 atomic regions from SNP 185103 to 185703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,301 DEBUG Processing 626/885 atomic regions from SNP 187777 to 188377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,309 DEBUG Processing 382/642 atomic regions from SNP 114341 to 114941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,377 DEBUG Processing 57/230 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,414 DEBUG Processing 446/1013 atomic regions from SNP 133729 to 134329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,416 DEBUG Processing 434/1125 atomic regions from SNP 130012 to 130612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,524 DEBUG Processing 619/848 atomic regions from SNP 185403 to 186003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,560 DEBUG Processing 627/885 atomic regions from SNP 188077 to 188677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,566 DEBUG Processing 383/642 atomic regions from SNP 114641 to 115241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,625 DEBUG Processing 58/230 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,687 DEBUG Processing 447/1013 atomic regions from SNP 134029 to 134629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,690 DEBUG Processing 435/1125 atomic regions from SNP 130312 to 130912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,801 DEBUG Processing 620/848 atomic regions from SNP 185703 to 186303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,811 DEBUG Processing 628/885 atomic regions from SNP 188377 to 188977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,813 DEBUG Processing 384/642 atomic regions from SNP 114941 to 115541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,864 DEBUG Processing 59/230 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,951 DEBUG Processing 436/1125 atomic regions from SNP 130612 to 131212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,962 DEBUG Processing 448/1013 atomic regions from SNP 134329 to 134929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,062 DEBUG Processing 629/885 atomic regions from SNP 188677 to 189277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,062 DEBUG Processing 385/642 atomic regions from SNP 115241 to 115841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,078 DEBUG Processing 621/848 atomic regions from SNP 186003 to 186603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,100 DEBUG Processing 60/230 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,218 DEBUG Processing 437/1125 atomic regions from SNP 130912 to 131512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,241 DEBUG Processing 449/1013 atomic regions from SNP 134629 to 135229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,311 DEBUG Processing 630/885 atomic regions from SNP 188977 to 189577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,313 DEBUG Processing 386/642 atomic regions from SNP 115541 to 116141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,327 DEBUG Processing 61/230 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,360 DEBUG Processing 622/848 atomic regions from SNP 186303 to 186903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,489 DEBUG Processing 438/1125 atomic regions from SNP 131212 to 131812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,524 DEBUG Processing 450/1013 atomic regions from SNP 134929 to 135529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,547 DEBUG Processing 631/885 atomic regions from SNP 189277 to 189877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,570 DEBUG Processing 62/230 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,572 DEBUG Processing 387/642 atomic regions from SNP 115841 to 116441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,631 DEBUG Processing 623/848 atomic regions from SNP 186603 to 187203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,761 DEBUG Processing 439/1125 atomic regions from SNP 131512 to 132112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,794 DEBUG Processing 451/1013 atomic regions from SNP 135229 to 135829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,800 DEBUG Processing 632/885 atomic regions from SNP 189577 to 190177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,800 DEBUG Processing 63/230 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,814 DEBUG Processing 388/642 atomic regions from SNP 116141 to 116741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,898 DEBUG Processing 624/848 atomic regions from SNP 186903 to 187503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,038 DEBUG Processing 64/230 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,055 DEBUG Processing 440/1125 atomic regions from SNP 131812 to 132412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,065 DEBUG Processing 389/642 atomic regions from SNP 116441 to 117041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,067 DEBUG Processing 452/1013 atomic regions from SNP 135529 to 136129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,067 DEBUG Processing 633/885 atomic regions from SNP 189877 to 190477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,171 DEBUG Processing 625/848 atomic regions from SNP 187203 to 187803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,276 DEBUG Processing 65/230 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,315 DEBUG Processing 390/642 atomic regions from SNP 116741 to 117341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,326 DEBUG Processing 634/885 atomic regions from SNP 190177 to 190777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,332 DEBUG Processing 441/1125 atomic regions from SNP 132112 to 132712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,345 DEBUG Processing 453/1013 atomic regions from SNP 135829 to 136429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,441 DEBUG Processing 626/848 atomic regions from SNP 187503 to 188103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,517 DEBUG Processing 66/230 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,569 DEBUG Processing 391/642 atomic regions from SNP 117041 to 117641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,575 DEBUG Processing 635/885 atomic regions from SNP 190477 to 191077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,602 DEBUG Processing 442/1125 atomic regions from SNP 132412 to 133012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,626 DEBUG Processing 454/1013 atomic regions from SNP 136129 to 136729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,705 DEBUG Processing 627/848 atomic regions from SNP 187803 to 188403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,753 DEBUG Processing 67/230 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,822 DEBUG Processing 392/642 atomic regions from SNP 117341 to 117941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,853 DEBUG Processing 636/885 atomic regions from SNP 190777 to 191377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,871 DEBUG Processing 443/1125 atomic regions from SNP 132712 to 133312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,910 DEBUG Processing 455/1013 atomic regions from SNP 136429 to 137029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,976 DEBUG Processing 628/848 atomic regions from SNP 188103 to 188703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,989 DEBUG Processing 68/230 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,075 DEBUG Processing 393/642 atomic regions from SNP 117641 to 118241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,137 DEBUG Processing 637/885 atomic regions from SNP 191077 to 191677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,151 DEBUG Processing 444/1125 atomic regions from SNP 133012 to 133612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,197 DEBUG Processing 456/1013 atomic regions from SNP 136729 to 137329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,233 DEBUG Processing 629/848 atomic regions from SNP 188403 to 189003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,233 DEBUG Processing 69/230 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,328 DEBUG Processing 394/642 atomic regions from SNP 117941 to 118541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,421 DEBUG Processing 638/885 atomic regions from SNP 191377 to 191977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,431 DEBUG Processing 445/1125 atomic regions from SNP 133312 to 133912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,471 DEBUG Processing 70/230 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,479 DEBUG Processing 457/1013 atomic regions from SNP 137029 to 137629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,485 DEBUG Processing 630/848 atomic regions from SNP 188703 to 189303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,568 DEBUG Processing 395/642 atomic regions from SNP 118241 to 118841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,698 DEBUG Processing 639/885 atomic regions from SNP 191677 to 192277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,709 DEBUG Processing 71/230 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,712 DEBUG Processing 446/1125 atomic regions from SNP 133612 to 134212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,744 DEBUG Processing 631/848 atomic regions from SNP 189003 to 189603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,755 DEBUG Processing 458/1013 atomic regions from SNP 137329 to 137929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,800 DEBUG Processing 396/642 atomic regions from SNP 118541 to 119141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,953 DEBUG Processing 640/885 atomic regions from SNP 191977 to 192577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,954 DEBUG Processing 72/230 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,983 DEBUG Processing 632/848 atomic regions from SNP 189303 to 189903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,997 DEBUG Processing 447/1125 atomic regions from SNP 133912 to 134512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,039 DEBUG Processing 397/642 atomic regions from SNP 118841 to 119441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,042 DEBUG Processing 459/1013 atomic regions from SNP 137629 to 138229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,194 DEBUG Processing 73/230 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,202 DEBUG Processing 641/885 atomic regions from SNP 192277 to 192877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,224 DEBUG Processing 633/848 atomic regions from SNP 189603 to 190203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,275 DEBUG Processing 448/1125 atomic regions from SNP 134212 to 134812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,288 DEBUG Processing 398/642 atomic regions from SNP 119141 to 119741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,319 DEBUG Processing 460/1013 atomic regions from SNP 137929 to 138529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,428 DEBUG Processing 74/230 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,443 DEBUG Processing 642/885 atomic regions from SNP 192577 to 193177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,467 DEBUG Processing 634/848 atomic regions from SNP 189903 to 190503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,542 DEBUG Processing 399/642 atomic regions from SNP 119441 to 120041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,548 DEBUG Processing 449/1125 atomic regions from SNP 134512 to 135112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,595 DEBUG Processing 461/1013 atomic regions from SNP 138229 to 138829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,662 DEBUG Processing 75/230 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,683 DEBUG Processing 643/885 atomic regions from SNP 192877 to 193477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,708 DEBUG Processing 635/848 atomic regions from SNP 190203 to 190803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,786 DEBUG Processing 400/642 atomic regions from SNP 119741 to 120341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,819 DEBUG Processing 450/1125 atomic regions from SNP 134812 to 135412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,861 DEBUG Processing 462/1013 atomic regions from SNP 138529 to 139129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,895 DEBUG Processing 76/230 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,920 DEBUG Processing 644/885 atomic regions from SNP 193177 to 193777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,944 DEBUG Processing 636/848 atomic regions from SNP 190503 to 191103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,029 DEBUG Processing 401/642 atomic regions from SNP 120041 to 120641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,079 DEBUG Processing 451/1125 atomic regions from SNP 135112 to 135712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,120 DEBUG Processing 77/230 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,123 DEBUG Processing 463/1013 atomic regions from SNP 138829 to 139429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,155 DEBUG Processing 645/885 atomic regions from SNP 193477 to 194077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,186 DEBUG Processing 637/848 atomic regions from SNP 190803 to 191403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,279 DEBUG Processing 402/642 atomic regions from SNP 120341 to 120941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,345 DEBUG Processing 452/1125 atomic regions from SNP 135412 to 136012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,370 DEBUG Processing 78/230 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,387 DEBUG Processing 646/885 atomic regions from SNP 193777 to 194377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,391 DEBUG Processing 464/1013 atomic regions from SNP 139129 to 139729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,446 DEBUG Processing 638/848 atomic regions from SNP 191103 to 191703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,526 DEBUG Processing 403/642 atomic regions from SNP 120641 to 121241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,616 DEBUG Processing 79/230 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,617 DEBUG Processing 453/1125 atomic regions from SNP 135712 to 136312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,627 DEBUG Processing 647/885 atomic regions from SNP 194077 to 194677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,655 DEBUG Processing 465/1013 atomic regions from SNP 139429 to 140029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,705 DEBUG Processing 639/848 atomic regions from SNP 191403 to 192003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,798 DEBUG Processing 404/642 atomic regions from SNP 120941 to 121541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,853 DEBUG Processing 80/230 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,876 DEBUG Processing 648/885 atomic regions from SNP 194377 to 194977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,894 DEBUG Processing 454/1125 atomic regions from SNP 136012 to 136612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,929 DEBUG Processing 466/1013 atomic regions from SNP 139729 to 140329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,943 DEBUG Processing 640/848 atomic regions from SNP 191703 to 192303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,065 DEBUG Processing 405/642 atomic regions from SNP 121241 to 121841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,094 DEBUG Processing 81/230 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,128 DEBUG Processing 649/885 atomic regions from SNP 194677 to 195277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,170 DEBUG Processing 455/1125 atomic regions from SNP 136312 to 136912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,187 DEBUG Processing 641/848 atomic regions from SNP 192003 to 192603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,220 DEBUG Processing 467/1013 atomic regions from SNP 140029 to 140629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,311 DEBUG Processing 406/642 atomic regions from SNP 121541 to 122141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,328 DEBUG Processing 82/230 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,364 DEBUG Processing 650/885 atomic regions from SNP 194977 to 195577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,428 DEBUG Processing 642/848 atomic regions from SNP 192303 to 192903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,442 DEBUG Processing 456/1125 atomic regions from SNP 136612 to 137212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,492 DEBUG Processing 468/1013 atomic regions from SNP 140329 to 140929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,561 DEBUG Processing 407/642 atomic regions from SNP 121841 to 122441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,562 DEBUG Processing 83/230 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,600 DEBUG Processing 651/885 atomic regions from SNP 195277 to 195877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,692 DEBUG Processing 643/848 atomic regions from SNP 192603 to 193203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,726 DEBUG Processing 457/1125 atomic regions from SNP 136912 to 137512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,769 DEBUG Processing 469/1013 atomic regions from SNP 140629 to 141229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,802 DEBUG Processing 84/230 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,835 DEBUG Processing 652/885 atomic regions from SNP 195577 to 196177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,837 DEBUG Processing 408/642 atomic regions from SNP 122141 to 122741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,955 DEBUG Processing 644/848 atomic regions from SNP 192903 to 193503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,013 DEBUG Processing 458/1125 atomic regions from SNP 137212 to 137812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,053 DEBUG Processing 85/230 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,065 DEBUG Processing 470/1013 atomic regions from SNP 140929 to 141529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,080 DEBUG Processing 653/885 atomic regions from SNP 195877 to 196477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,124 DEBUG Processing 409/642 atomic regions from SNP 122441 to 123041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,207 DEBUG Processing 645/848 atomic regions from SNP 193203 to 193803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,291 DEBUG Processing 459/1125 atomic regions from SNP 137512 to 138112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,308 DEBUG Processing 86/230 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,332 DEBUG Processing 654/885 atomic regions from SNP 196177 to 196777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,351 DEBUG Processing 471/1013 atomic regions from SNP 141229 to 141829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,413 DEBUG Processing 410/642 atomic regions from SNP 122741 to 123341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,459 DEBUG Processing 646/848 atomic regions from SNP 193503 to 194103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,544 DEBUG Processing 87/230 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,563 DEBUG Processing 460/1125 atomic regions from SNP 137812 to 138412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,582 DEBUG Processing 655/885 atomic regions from SNP 196477 to 197077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,633 DEBUG Processing 472/1013 atomic regions from SNP 141529 to 142129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,689 DEBUG Processing 411/642 atomic regions from SNP 123041 to 123641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,714 DEBUG Processing 647/848 atomic regions from SNP 193803 to 194403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,786 DEBUG Processing 88/230 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,826 DEBUG Processing 656/885 atomic regions from SNP 196777 to 197377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,832 DEBUG Processing 461/1125 atomic regions from SNP 138112 to 138712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,918 DEBUG Processing 473/1013 atomic regions from SNP 141829 to 142429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,952 DEBUG Processing 412/642 atomic regions from SNP 123341 to 123941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,963 DEBUG Processing 648/848 atomic regions from SNP 194103 to 194703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,015 DEBUG Processing 89/230 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,064 DEBUG Processing 657/885 atomic regions from SNP 197077 to 197677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,111 DEBUG Processing 462/1125 atomic regions from SNP 138412 to 139012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,195 DEBUG Processing 474/1013 atomic regions from SNP 142129 to 142729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,203 DEBUG Processing 649/848 atomic regions from SNP 194403 to 195003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,234 DEBUG Processing 413/642 atomic regions from SNP 123641 to 124241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,270 DEBUG Processing 90/230 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,298 DEBUG Processing 658/885 atomic regions from SNP 197377 to 197977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,397 DEBUG Processing 463/1125 atomic regions from SNP 138712 to 139312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,444 DEBUG Processing 650/848 atomic regions from SNP 194703 to 195303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,466 DEBUG Processing 475/1013 atomic regions from SNP 142429 to 143029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,510 DEBUG Processing 414/642 atomic regions from SNP 123941 to 124541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,514 DEBUG Processing 91/230 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,536 DEBUG Processing 659/885 atomic regions from SNP 197677 to 198277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,667 DEBUG Processing 464/1125 atomic regions from SNP 139012 to 139612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,683 DEBUG Processing 651/848 atomic regions from SNP 195003 to 195603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,735 DEBUG Processing 476/1013 atomic regions from SNP 142729 to 143329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,749 DEBUG Processing 92/230 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,776 DEBUG Processing 415/642 atomic regions from SNP 124241 to 124841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,780 DEBUG Processing 660/885 atomic regions from SNP 197977 to 198577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,923 DEBUG Processing 652/848 atomic regions from SNP 195303 to 195903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,971 DEBUG Processing 93/230 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,977 DEBUG Processing 465/1125 atomic regions from SNP 139312 to 139912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,001 DEBUG Processing 477/1013 atomic regions from SNP 143029 to 143629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,029 DEBUG Processing 661/885 atomic regions from SNP 198277 to 198877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,050 DEBUG Processing 416/642 atomic regions from SNP 124541 to 125141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,156 DEBUG Processing 653/848 atomic regions from SNP 195603 to 196203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,196 DEBUG Processing 94/230 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,264 DEBUG Processing 478/1013 atomic regions from SNP 143329 to 143929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,273 DEBUG Processing 466/1125 atomic regions from SNP 139612 to 140212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,273 DEBUG Processing 662/885 atomic regions from SNP 198577 to 199177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,323 DEBUG Processing 417/642 atomic regions from SNP 124841 to 125441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,391 DEBUG Processing 654/848 atomic regions from SNP 195903 to 196503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,425 DEBUG Processing 95/230 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,517 DEBUG Processing 663/885 atomic regions from SNP 198877 to 199477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,528 DEBUG Processing 479/1013 atomic regions from SNP 143629 to 144229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,547 DEBUG Processing 467/1125 atomic regions from SNP 139912 to 140512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,588 DEBUG Processing 418/642 atomic regions from SNP 125141 to 125741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,624 DEBUG Processing 655/848 atomic regions from SNP 196203 to 196803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,657 DEBUG Processing 96/230 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,766 DEBUG Processing 664/885 atomic regions from SNP 199177 to 199777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,796 DEBUG Processing 480/1013 atomic regions from SNP 143929 to 144529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,822 DEBUG Processing 468/1125 atomic regions from SNP 140212 to 140812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,858 DEBUG Processing 419/642 atomic regions from SNP 125441 to 126041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,875 DEBUG Processing 656/848 atomic regions from SNP 196503 to 197103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,893 DEBUG Processing 97/230 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,039 DEBUG Processing 665/885 atomic regions from SNP 199477 to 200077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,093 DEBUG Processing 469/1125 atomic regions from SNP 140512 to 141112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,095 DEBUG Processing 481/1013 atomic regions from SNP 144229 to 144829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,141 DEBUG Processing 420/642 atomic regions from SNP 125741 to 126341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,142 DEBUG Processing 98/230 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,146 DEBUG Processing 657/848 atomic regions from SNP 196803 to 197403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,306 DEBUG Processing 666/885 atomic regions from SNP 199777 to 200377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,416 DEBUG Processing 470/1125 atomic regions from SNP 140812 to 141412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,455 DEBUG Processing 99/230 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,466 DEBUG Processing 482/1013 atomic regions from SNP 144529 to 145129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,480 DEBUG Processing 658/848 atomic regions from SNP 197103 to 197703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,484 DEBUG Processing 421/642 atomic regions from SNP 126041 to 126641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,574 DEBUG Processing 667/885 atomic regions from SNP 200077 to 200677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,685 DEBUG Processing 100/230 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,688 DEBUG Processing 471/1125 atomic regions from SNP 141112 to 141712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,750 DEBUG Processing 422/642 atomic regions from SNP 126341 to 126941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,754 DEBUG Processing 659/848 atomic regions from SNP 197403 to 198003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,760 DEBUG Processing 483/1013 atomic regions from SNP 144829 to 145429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,852 DEBUG Processing 668/885 atomic regions from SNP 200377 to 200977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,907 DEBUG Processing 101/230 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,955 DEBUG Processing 472/1125 atomic regions from SNP 141412 to 142012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,007 DEBUG Processing 423/642 atomic regions from SNP 126641 to 127241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,015 DEBUG Processing 660/848 atomic regions from SNP 197703 to 198303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,027 DEBUG Processing 484/1013 atomic regions from SNP 145129 to 145729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,114 DEBUG Processing 669/885 atomic regions from SNP 200677 to 201277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,133 DEBUG Processing 102/230 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,222 DEBUG Processing 473/1125 atomic regions from SNP 141712 to 142312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,273 DEBUG Processing 424/642 atomic regions from SNP 126941 to 127541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,279 DEBUG Processing 661/848 atomic regions from SNP 198003 to 198603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,290 DEBUG Processing 485/1013 atomic regions from SNP 145429 to 146029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,365 DEBUG Processing 103/230 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,379 DEBUG Processing 670/885 atomic regions from SNP 200977 to 201577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,498 DEBUG Processing 474/1125 atomic regions from SNP 142012 to 142612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,531 DEBUG Processing 662/848 atomic regions from SNP 198303 to 198903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,548 DEBUG Processing 425/642 atomic regions from SNP 127241 to 127841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,563 DEBUG Processing 486/1013 atomic regions from SNP 145729 to 146329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,595 DEBUG Processing 104/230 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,658 DEBUG Processing 671/885 atomic regions from SNP 201277 to 201877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,786 DEBUG Processing 475/1125 atomic regions from SNP 142312 to 142912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,804 DEBUG Processing 663/848 atomic regions from SNP 198603 to 199203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,806 DEBUG Processing 426/642 atomic regions from SNP 127541 to 128141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,827 DEBUG Processing 105/230 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,836 DEBUG Processing 487/1013 atomic regions from SNP 146029 to 146629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,930 DEBUG Processing 672/885 atomic regions from SNP 201577 to 202177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,050 DEBUG Processing 427/642 atomic regions from SNP 127841 to 128441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,064 DEBUG Processing 476/1125 atomic regions from SNP 142612 to 143212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,065 DEBUG Processing 106/230 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,081 DEBUG Processing 664/848 atomic regions from SNP 198903 to 199503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,117 DEBUG Processing 488/1013 atomic regions from SNP 146329 to 146929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,205 DEBUG Processing 673/885 atomic regions from SNP 201877 to 202477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,283 DEBUG Processing 107/230 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,312 DEBUG Processing 428/642 atomic regions from SNP 128141 to 128741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,356 DEBUG Processing 665/848 atomic regions from SNP 199203 to 199803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,368 DEBUG Processing 477/1125 atomic regions from SNP 142912 to 143512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,379 DEBUG Processing 489/1013 atomic regions from SNP 146629 to 147229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,448 DEBUG Processing 674/885 atomic regions from SNP 202177 to 202777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,502 DEBUG Processing 108/230 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,581 DEBUG Processing 429/642 atomic regions from SNP 128441 to 129041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,636 DEBUG Processing 666/848 atomic regions from SNP 199503 to 200103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,648 DEBUG Processing 490/1013 atomic regions from SNP 146929 to 147529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,673 DEBUG Processing 478/1125 atomic regions from SNP 143212 to 143812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,702 DEBUG Processing 675/885 atomic regions from SNP 202477 to 203077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,738 DEBUG Processing 109/230 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,853 DEBUG Processing 430/642 atomic regions from SNP 128741 to 129341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,918 DEBUG Processing 667/848 atomic regions from SNP 199803 to 200403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,919 DEBUG Processing 491/1013 atomic regions from SNP 147229 to 147829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,965 DEBUG Processing 110/230 atomic regions from SNP 32809 to 33410 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,974 DEBUG Processing 479/1125 atomic regions from SNP 143512 to 144112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,978 DEBUG Processing 676/885 atomic regions from SNP 202777 to 203377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,117 DEBUG Processing 431/642 atomic regions from SNP 129041 to 129641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,192 DEBUG Processing 111/230 atomic regions from SNP 33110 to 33711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,192 DEBUG Processing 492/1013 atomic regions from SNP 147529 to 148129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,196 DEBUG Processing 668/848 atomic regions from SNP 200103 to 200703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,234 DEBUG Processing 677/885 atomic regions from SNP 203077 to 203677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,259 DEBUG Processing 480/1125 atomic regions from SNP 143812 to 144412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,360 DEBUG Processing 432/642 atomic regions from SNP 129341 to 129941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,431 DEBUG Processing 112/230 atomic regions from SNP 33411 to 34011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,472 DEBUG Processing 493/1013 atomic regions from SNP 147829 to 148429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,478 DEBUG Processing 669/848 atomic regions from SNP 200403 to 201003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,506 DEBUG Processing 678/885 atomic regions from SNP 203377 to 203977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,544 DEBUG Processing 481/1125 atomic regions from SNP 144112 to 144712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,608 DEBUG Processing 433/642 atomic regions from SNP 129641 to 130241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,682 DEBUG Processing 113/230 atomic regions from SNP 33711 to 34311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,754 DEBUG Processing 670/848 atomic regions from SNP 200703 to 201303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,761 DEBUG Processing 494/1013 atomic regions from SNP 148129 to 148729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,762 DEBUG Processing 679/885 atomic regions from SNP 203677 to 204277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,848 DEBUG Processing 482/1125 atomic regions from SNP 144412 to 145012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,863 DEBUG Processing 434/642 atomic regions from SNP 129941 to 130541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,916 DEBUG Processing 114/230 atomic regions from SNP 34011 to 34611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,006 DEBUG Processing 680/885 atomic regions from SNP 203977 to 204577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,022 DEBUG Processing 671/848 atomic regions from SNP 201003 to 201603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,029 DEBUG Processing 495/1013 atomic regions from SNP 148429 to 149029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,119 DEBUG Processing 435/642 atomic regions from SNP 130241 to 130841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,139 DEBUG Processing 115/230 atomic regions from SNP 34311 to 34911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,150 DEBUG Processing 483/1125 atomic regions from SNP 144712 to 145312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,250 DEBUG Processing 681/885 atomic regions from SNP 204277 to 204877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,292 DEBUG Processing 672/848 atomic regions from SNP 201303 to 201903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,297 DEBUG Processing 496/1013 atomic regions from SNP 148729 to 149329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,375 DEBUG Processing 116/230 atomic regions from SNP 34611 to 35211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,385 DEBUG Processing 436/642 atomic regions from SNP 130541 to 131141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,445 DEBUG Processing 484/1125 atomic regions from SNP 145012 to 145612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,486 DEBUG Processing 682/885 atomic regions from SNP 204577 to 205177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,559 DEBUG Processing 673/848 atomic regions from SNP 201603 to 202203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,561 DEBUG Processing 497/1013 atomic regions from SNP 149029 to 149629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,616 DEBUG Processing 117/230 atomic regions from SNP 34911 to 35511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,646 DEBUG Processing 437/642 atomic regions from SNP 130841 to 131441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,720 DEBUG Processing 683/885 atomic regions from SNP 204877 to 205477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,740 DEBUG Processing 485/1125 atomic regions from SNP 145312 to 145912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,819 DEBUG Processing 674/848 atomic regions from SNP 201903 to 202503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,826 DEBUG Processing 498/1013 atomic regions from SNP 149329 to 149929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,852 DEBUG Processing 118/230 atomic regions from SNP 35211 to 35811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,930 DEBUG Processing 438/642 atomic regions from SNP 131141 to 131741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,956 DEBUG Processing 684/885 atomic regions from SNP 205177 to 205777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,018 DEBUG Processing 486/1125 atomic regions from SNP 145612 to 146212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,085 DEBUG Processing 675/848 atomic regions from SNP 202203 to 202803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,085 DEBUG Processing 119/230 atomic regions from SNP 35511 to 36111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,095 DEBUG Processing 499/1013 atomic regions from SNP 149629 to 150229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,194 DEBUG Processing 685/885 atomic regions from SNP 205477 to 206077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,209 DEBUG Processing 439/642 atomic regions from SNP 131441 to 132041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,285 DEBUG Processing 487/1125 atomic regions from SNP 145912 to 146512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,316 DEBUG Processing 120/230 atomic regions from SNP 35811 to 36411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,348 DEBUG Processing 676/848 atomic regions from SNP 202503 to 203103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,371 DEBUG Processing 500/1013 atomic regions from SNP 149929 to 150529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,438 DEBUG Processing 686/885 atomic regions from SNP 205777 to 206377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,475 DEBUG Processing 440/642 atomic regions from SNP 131741 to 132341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,555 DEBUG Processing 121/230 atomic regions from SNP 36111 to 36711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,573 DEBUG Processing 488/1125 atomic regions from SNP 146212 to 146812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,608 DEBUG Processing 677/848 atomic regions from SNP 202803 to 203403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,641 DEBUG Processing 501/1013 atomic regions from SNP 150229 to 150829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,683 DEBUG Processing 687/885 atomic regions from SNP 206077 to 206677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,733 DEBUG Processing 441/642 atomic regions from SNP 132041 to 132641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,786 DEBUG Processing 122/230 atomic regions from SNP 36411 to 37011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,866 DEBUG Processing 489/1125 atomic regions from SNP 146512 to 147112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,870 DEBUG Processing 678/848 atomic regions from SNP 203103 to 203703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,915 DEBUG Processing 502/1013 atomic regions from SNP 150529 to 151129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,935 DEBUG Processing 688/885 atomic regions from SNP 206377 to 206977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,980 DEBUG Processing 442/642 atomic regions from SNP 132341 to 132941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,018 DEBUG Processing 123/230 atomic regions from SNP 36711 to 37311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,127 DEBUG Processing 679/848 atomic regions from SNP 203403 to 204003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,142 DEBUG Processing 490/1125 atomic regions from SNP 146812 to 147412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,180 DEBUG Processing 689/885 atomic regions from SNP 206677 to 207277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,186 DEBUG Processing 503/1013 atomic regions from SNP 150829 to 151429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,234 DEBUG Processing 443/642 atomic regions from SNP 132641 to 133241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,272 DEBUG Processing 124/230 atomic regions from SNP 37011 to 37611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,380 DEBUG Processing 680/848 atomic regions from SNP 203703 to 204303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,421 DEBUG Processing 690/885 atomic regions from SNP 206977 to 207577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,444 DEBUG Processing 491/1125 atomic regions from SNP 147112 to 147712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,455 DEBUG Processing 504/1013 atomic regions from SNP 151129 to 151729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,480 DEBUG Processing 444/642 atomic regions from SNP 132941 to 133541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,512 DEBUG Processing 125/230 atomic regions from SNP 37311 to 37911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,653 DEBUG Processing 681/848 atomic regions from SNP 204003 to 204603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,661 DEBUG Processing 691/885 atomic regions from SNP 207277 to 207877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,724 DEBUG Processing 445/642 atomic regions from SNP 133241 to 133841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,727 DEBUG Processing 505/1013 atomic regions from SNP 151429 to 152029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,749 DEBUG Processing 126/230 atomic regions from SNP 37611 to 38211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,750 DEBUG Processing 492/1125 atomic regions from SNP 147412 to 148012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,901 DEBUG Processing 692/885 atomic regions from SNP 207577 to 208177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,926 DEBUG Processing 682/848 atomic regions from SNP 204303 to 204903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,985 DEBUG Processing 446/642 atomic regions from SNP 133541 to 134141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,993 DEBUG Processing 127/230 atomic regions from SNP 37911 to 38511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,023 DEBUG Processing 506/1013 atomic regions from SNP 151729 to 152329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,053 DEBUG Processing 493/1125 atomic regions from SNP 147712 to 148312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,146 DEBUG Processing 693/885 atomic regions from SNP 207877 to 208477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,204 DEBUG Processing 683/848 atomic regions from SNP 204603 to 205203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,249 DEBUG Processing 128/230 atomic regions from SNP 38211 to 38811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,259 DEBUG Processing 447/642 atomic regions from SNP 133841 to 134441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,302 DEBUG Processing 507/1013 atomic regions from SNP 152029 to 152629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,338 DEBUG Processing 494/1125 atomic regions from SNP 148012 to 148612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,388 DEBUG Processing 694/885 atomic regions from SNP 208177 to 208777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,477 DEBUG Processing 684/848 atomic regions from SNP 204903 to 205503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,506 DEBUG Processing 129/230 atomic regions from SNP 38511 to 39111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,533 DEBUG Processing 448/642 atomic regions from SNP 134141 to 134741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,578 DEBUG Processing 508/1013 atomic regions from SNP 152329 to 152929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,627 DEBUG Processing 695/885 atomic regions from SNP 208477 to 209077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,638 DEBUG Processing 495/1125 atomic regions from SNP 148312 to 148912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,744 DEBUG Processing 685/848 atomic regions from SNP 205203 to 205803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,774 DEBUG Processing 130/230 atomic regions from SNP 38811 to 39411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,807 DEBUG Processing 449/642 atomic regions from SNP 134441 to 135041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,857 DEBUG Processing 509/1013 atomic regions from SNP 152629 to 153229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,860 DEBUG Processing 696/885 atomic regions from SNP 208777 to 209377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,926 DEBUG Processing 496/1125 atomic regions from SNP 148612 to 149212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,016 DEBUG Processing 686/848 atomic regions from SNP 205503 to 206103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,024 DEBUG Processing 131/230 atomic regions from SNP 39111 to 39711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,078 DEBUG Processing 450/642 atomic regions from SNP 134741 to 135341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,099 DEBUG Processing 697/885 atomic regions from SNP 209077 to 209677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,139 DEBUG Processing 510/1013 atomic regions from SNP 152929 to 153529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,217 DEBUG Processing 497/1125 atomic regions from SNP 148912 to 149512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,268 DEBUG Processing 132/230 atomic regions from SNP 39411 to 40011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,276 DEBUG Processing 687/848 atomic regions from SNP 205803 to 206403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,344 DEBUG Processing 451/642 atomic regions from SNP 135041 to 135641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,349 DEBUG Processing 698/885 atomic regions from SNP 209377 to 209977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,439 DEBUG Processing 511/1013 atomic regions from SNP 153229 to 153829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,482 DEBUG Processing 498/1125 atomic regions from SNP 149212 to 149812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,495 DEBUG Processing 133/230 atomic regions from SNP 39711 to 40311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,539 DEBUG Processing 688/848 atomic regions from SNP 206103 to 206703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,599 DEBUG Processing 699/885 atomic regions from SNP 209677 to 210277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,618 DEBUG Processing 452/642 atomic regions from SNP 135341 to 135941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,725 DEBUG Processing 134/230 atomic regions from SNP 40011 to 40611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,734 DEBUG Processing 512/1013 atomic regions from SNP 153529 to 154129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,747 DEBUG Processing 499/1125 atomic regions from SNP 149512 to 150112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,815 DEBUG Processing 689/848 atomic regions from SNP 206403 to 207003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,852 DEBUG Processing 700/885 atomic regions from SNP 209977 to 210577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,890 DEBUG Processing 453/642 atomic regions from SNP 135641 to 136241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,957 DEBUG Processing 135/230 atomic regions from SNP 40311 to 40911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,018 DEBUG Processing 500/1125 atomic regions from SNP 149812 to 150412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,039 DEBUG Processing 513/1013 atomic regions from SNP 153829 to 154429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,089 DEBUG Processing 690/848 atomic regions from SNP 206703 to 207303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,122 DEBUG Processing 701/885 atomic regions from SNP 210277 to 210877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,139 DEBUG Processing 454/642 atomic regions from SNP 135941 to 136541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,180 DEBUG Processing 136/230 atomic regions from SNP 40611 to 41211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,286 DEBUG Processing 501/1125 atomic regions from SNP 150112 to 150712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,344 DEBUG Processing 691/848 atomic regions from SNP 207003 to 207603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,344 DEBUG Processing 514/1013 atomic regions from SNP 154129 to 154729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,379 DEBUG Processing 455/642 atomic regions from SNP 136241 to 136841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,402 DEBUG Processing 137/230 atomic regions from SNP 40911 to 41511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,402 DEBUG Processing 702/885 atomic regions from SNP 210577 to 211177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,556 DEBUG Processing 502/1125 atomic regions from SNP 150412 to 151012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,586 DEBUG Processing 692/848 atomic regions from SNP 207303 to 207903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,630 DEBUG Processing 456/642 atomic regions from SNP 136541 to 137141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,634 DEBUG Processing 138/230 atomic regions from SNP 41211 to 41811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,661 DEBUG Processing 515/1013 atomic regions from SNP 154429 to 155029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,689 DEBUG Processing 703/885 atomic regions from SNP 210877 to 211477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,818 DEBUG Processing 693/848 atomic regions from SNP 207603 to 208203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,821 DEBUG Processing 503/1125 atomic regions from SNP 150712 to 151312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,872 DEBUG Processing 139/230 atomic regions from SNP 41511 to 42111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,883 DEBUG Processing 457/642 atomic regions from SNP 136841 to 137441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,960 DEBUG Processing 704/885 atomic regions from SNP 211177 to 211777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,963 DEBUG Processing 516/1013 atomic regions from SNP 154729 to 155329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,054 DEBUG Processing 694/848 atomic regions from SNP 207903 to 208503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,092 DEBUG Processing 504/1125 atomic regions from SNP 151012 to 151612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,110 DEBUG Processing 140/230 atomic regions from SNP 41811 to 42411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,163 DEBUG Processing 458/642 atomic regions from SNP 137141 to 137741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,242 DEBUG Processing 705/885 atomic regions from SNP 211477 to 212077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,267 DEBUG Processing 517/1013 atomic regions from SNP 155029 to 155629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,293 DEBUG Processing 695/848 atomic regions from SNP 208203 to 208803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,338 DEBUG Processing 141/230 atomic regions from SNP 42111 to 42711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,367 DEBUG Processing 505/1125 atomic regions from SNP 151312 to 151912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,445 DEBUG Processing 459/642 atomic regions from SNP 137441 to 138041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,513 DEBUG Processing 706/885 atomic regions from SNP 211777 to 212377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,547 DEBUG Processing 696/848 atomic regions from SNP 208503 to 209103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,558 DEBUG Processing 518/1013 atomic regions from SNP 155329 to 155929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,568 DEBUG Processing 142/230 atomic regions from SNP 42411 to 43011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,648 DEBUG Processing 506/1125 atomic regions from SNP 151612 to 152212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,731 DEBUG Processing 460/642 atomic regions from SNP 137741 to 138341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,781 DEBUG Processing 707/885 atomic regions from SNP 212077 to 212677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,809 DEBUG Processing 697/848 atomic regions from SNP 208803 to 209403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,817 DEBUG Processing 143/230 atomic regions from SNP 42711 to 43311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,860 DEBUG Processing 519/1013 atomic regions from SNP 155629 to 156229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,955 DEBUG Processing 507/1125 atomic regions from SNP 151912 to 152512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,996 DEBUG Processing 461/642 atomic regions from SNP 138041 to 138641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,050 DEBUG Processing 708/885 atomic regions from SNP 212377 to 212977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,052 DEBUG Processing 144/230 atomic regions from SNP 43011 to 43611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,070 DEBUG Processing 698/848 atomic regions from SNP 209103 to 209703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,169 DEBUG Processing 520/1013 atomic regions from SNP 155929 to 156529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,241 DEBUG Processing 462/642 atomic regions from SNP 138341 to 138941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,262 DEBUG Processing 508/1125 atomic regions from SNP 152212 to 152812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,275 DEBUG Processing 145/230 atomic regions from SNP 43311 to 43911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,301 DEBUG Processing 709/885 atomic regions from SNP 212677 to 213277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,319 DEBUG Processing 699/848 atomic regions from SNP 209403 to 210003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,484 DEBUG Processing 521/1013 atomic regions from SNP 156229 to 156829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,504 DEBUG Processing 146/230 atomic regions from SNP 43611 to 44211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,511 DEBUG Processing 463/642 atomic regions from SNP 138641 to 139241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,551 DEBUG Processing 710/885 atomic regions from SNP 212977 to 213577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,557 DEBUG Processing 509/1125 atomic regions from SNP 152512 to 153112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,564 DEBUG Processing 700/848 atomic regions from SNP 209703 to 210303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,741 DEBUG Processing 147/230 atomic regions from SNP 43911 to 44511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,776 DEBUG Processing 464/642 atomic regions from SNP 138941 to 139541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,794 DEBUG Processing 522/1013 atomic regions from SNP 156529 to 157129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,800 DEBUG Processing 711/885 atomic regions from SNP 213277 to 213877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,806 DEBUG Processing 701/848 atomic regions from SNP 210003 to 210603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,852 DEBUG Processing 510/1125 atomic regions from SNP 152812 to 153412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,982 DEBUG Processing 148/230 atomic regions from SNP 44211 to 44811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,042 DEBUG Processing 465/642 atomic regions from SNP 139241 to 139841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,050 DEBUG Processing 712/885 atomic regions from SNP 213577 to 214177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,053 DEBUG Processing 702/848 atomic regions from SNP 210303 to 210903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,115 DEBUG Processing 523/1013 atomic regions from SNP 156829 to 157429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,125 DEBUG Processing 511/1125 atomic regions from SNP 153112 to 153712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,220 DEBUG Processing 149/230 atomic regions from SNP 44511 to 45111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,306 DEBUG Processing 703/848 atomic regions from SNP 210603 to 211203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,311 DEBUG Processing 713/885 atomic regions from SNP 213877 to 214477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,317 DEBUG Processing 466/642 atomic regions from SNP 139541 to 140141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,409 DEBUG Processing 512/1125 atomic regions from SNP 153412 to 154012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,420 DEBUG Processing 524/1013 atomic regions from SNP 157129 to 157729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,456 DEBUG Processing 150/230 atomic regions from SNP 44811 to 45411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,554 DEBUG Processing 704/848 atomic regions from SNP 210903 to 211503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,583 DEBUG Processing 714/885 atomic regions from SNP 214177 to 214777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,594 DEBUG Processing 467/642 atomic regions from SNP 139841 to 140441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,698 DEBUG Processing 151/230 atomic regions from SNP 45111 to 45711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,698 DEBUG Processing 513/1125 atomic regions from SNP 153712 to 154312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,703 DEBUG Processing 525/1013 atomic regions from SNP 157429 to 158029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,797 DEBUG Processing 705/848 atomic regions from SNP 211203 to 211803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,866 DEBUG Processing 715/885 atomic regions from SNP 214477 to 215077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,876 DEBUG Processing 468/642 atomic regions from SNP 140141 to 140741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,953 DEBUG Processing 152/230 atomic regions from SNP 45411 to 46011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,013 DEBUG Processing 526/1013 atomic regions from SNP 157729 to 158329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,043 DEBUG Processing 514/1125 atomic regions from SNP 154012 to 154612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,057 DEBUG Processing 706/848 atomic regions from SNP 211503 to 212103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,156 DEBUG Processing 469/642 atomic regions from SNP 140441 to 141041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,166 DEBUG Processing 716/885 atomic regions from SNP 214777 to 215377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,207 DEBUG Processing 153/230 atomic regions from SNP 45711 to 46311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,375 DEBUG Processing 707/848 atomic regions from SNP 211803 to 212403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,381 DEBUG Processing 527/1013 atomic regions from SNP 158029 to 158629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,435 DEBUG Processing 515/1125 atomic regions from SNP 154312 to 154912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,475 DEBUG Processing 470/642 atomic regions from SNP 140741 to 141341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,503 DEBUG Processing 717/885 atomic regions from SNP 215077 to 215677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,507 DEBUG Processing 154/230 atomic regions from SNP 46011 to 46611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,697 DEBUG Processing 708/848 atomic regions from SNP 212103 to 212703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,741 DEBUG Processing 528/1013 atomic regions from SNP 158329 to 158929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,773 DEBUG Processing 155/230 atomic regions from SNP 46311 to 46911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,781 DEBUG Processing 471/642 atomic regions from SNP 141041 to 141641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,800 DEBUG Processing 516/1125 atomic regions from SNP 154612 to 155212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,812 DEBUG Processing 718/885 atomic regions from SNP 215377 to 215977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,938 DEBUG Processing 709/848 atomic regions from SNP 212403 to 213003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,031 DEBUG Processing 156/230 atomic regions from SNP 46611 to 47211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,042 DEBUG Processing 529/1013 atomic regions from SNP 158629 to 159229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,057 DEBUG Processing 472/642 atomic regions from SNP 141341 to 141941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,093 DEBUG Processing 719/885 atomic regions from SNP 215677 to 216277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,118 DEBUG Processing 517/1125 atomic regions from SNP 154912 to 155512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,176 DEBUG Processing 710/848 atomic regions from SNP 212703 to 213303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,268 DEBUG Processing 157/230 atomic regions from SNP 46911 to 47511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,331 DEBUG Processing 473/642 atomic regions from SNP 141641 to 142241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,332 DEBUG Processing 530/1013 atomic regions from SNP 158929 to 159529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,351 DEBUG Processing 720/885 atomic regions from SNP 215977 to 216577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,431 DEBUG Processing 711/848 atomic regions from SNP 213003 to 213603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,433 DEBUG Processing 518/1125 atomic regions from SNP 155212 to 155812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,501 DEBUG Processing 158/230 atomic regions from SNP 47211 to 47811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,585 DEBUG Processing 474/642 atomic regions from SNP 141941 to 142541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,597 DEBUG Processing 721/885 atomic regions from SNP 216277 to 216877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,609 DEBUG Processing 531/1013 atomic regions from SNP 159229 to 159829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,699 DEBUG Processing 712/848 atomic regions from SNP 213303 to 213903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,738 DEBUG Processing 519/1125 atomic regions from SNP 155512 to 156112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,742 DEBUG Processing 159/230 atomic regions from SNP 47511 to 48111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,847 DEBUG Processing 475/642 atomic regions from SNP 142241 to 142841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,875 DEBUG Processing 722/885 atomic regions from SNP 216577 to 217177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,894 DEBUG Processing 532/1013 atomic regions from SNP 159529 to 160129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,959 DEBUG Processing 713/848 atomic regions from SNP 213603 to 214203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,979 DEBUG Processing 160/230 atomic regions from SNP 47811 to 48411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,068 DEBUG Processing 520/1125 atomic regions from SNP 155812 to 156412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,104 DEBUG Processing 476/642 atomic regions from SNP 142541 to 143141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,150 DEBUG Processing 723/885 atomic regions from SNP 216877 to 217477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,183 DEBUG Processing 533/1013 atomic regions from SNP 159829 to 160429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,200 DEBUG Processing 714/848 atomic regions from SNP 213903 to 214503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,217 DEBUG Processing 161/230 atomic regions from SNP 48111 to 48711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,354 DEBUG Processing 477/642 atomic regions from SNP 142841 to 143441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,368 DEBUG Processing 521/1125 atomic regions from SNP 156112 to 156712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,401 DEBUG Processing 724/885 atomic regions from SNP 217177 to 217777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,452 DEBUG Processing 715/848 atomic regions from SNP 214203 to 214803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,464 DEBUG Processing 162/230 atomic regions from SNP 48411 to 49011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,473 DEBUG Processing 534/1013 atomic regions from SNP 160129 to 160729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,609 DEBUG Processing 478/642 atomic regions from SNP 143141 to 143741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,655 DEBUG Processing 725/885 atomic regions from SNP 217477 to 218077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,665 DEBUG Processing 522/1125 atomic regions from SNP 156412 to 157012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,716 DEBUG Processing 163/230 atomic regions from SNP 48711 to 49311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,727 DEBUG Processing 716/848 atomic regions from SNP 214503 to 215103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,773 DEBUG Processing 535/1013 atomic regions from SNP 160429 to 161029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,861 DEBUG Processing 479/642 atomic regions from SNP 143441 to 144041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,910 DEBUG Processing 726/885 atomic regions from SNP 217777 to 218377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,960 DEBUG Processing 164/230 atomic regions from SNP 49011 to 49611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,972 DEBUG Processing 523/1125 atomic regions from SNP 156712 to 157312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,019 DEBUG Processing 717/848 atomic regions from SNP 214803 to 215403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,063 DEBUG Processing 536/1013 atomic regions from SNP 160729 to 161329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,114 DEBUG Processing 480/642 atomic regions from SNP 143741 to 144341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,178 DEBUG Processing 727/885 atomic regions from SNP 218077 to 218677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,197 DEBUG Processing 165/230 atomic regions from SNP 49311 to 49911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,291 DEBUG Processing 524/1125 atomic regions from SNP 157012 to 157612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,302 DEBUG Processing 718/848 atomic regions from SNP 215103 to 215703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,341 DEBUG Processing 537/1013 atomic regions from SNP 161029 to 161629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,364 DEBUG Processing 481/642 atomic regions from SNP 144041 to 144641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,434 DEBUG Processing 166/230 atomic regions from SNP 49611 to 50211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,443 DEBUG Processing 728/885 atomic regions from SNP 218377 to 218977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,583 DEBUG Processing 719/848 atomic regions from SNP 215403 to 216003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,606 DEBUG Processing 525/1125 atomic regions from SNP 157312 to 157912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,625 DEBUG Processing 482/642 atomic regions from SNP 144341 to 144941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,626 DEBUG Processing 538/1013 atomic regions from SNP 161329 to 161929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,675 DEBUG Processing 167/230 atomic regions from SNP 49911 to 50511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,697 DEBUG Processing 729/885 atomic regions from SNP 218677 to 219277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,839 DEBUG Processing 720/848 atomic regions from SNP 215703 to 216303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,888 DEBUG Processing 483/642 atomic regions from SNP 144641 to 145241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,908 DEBUG Processing 539/1013 atomic regions from SNP 161629 to 162229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,917 DEBUG Processing 168/230 atomic regions from SNP 50211 to 50811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,920 DEBUG Processing 526/1125 atomic regions from SNP 157612 to 158212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,953 DEBUG Processing 730/885 atomic regions from SNP 218977 to 219577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,080 DEBUG Processing 721/848 atomic regions from SNP 216003 to 216603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,165 DEBUG Processing 484/642 atomic regions from SNP 144941 to 145541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,170 DEBUG Processing 169/230 atomic regions from SNP 50511 to 51111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,195 DEBUG Processing 540/1013 atomic regions from SNP 161929 to 162529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,208 DEBUG Processing 731/885 atomic regions from SNP 219277 to 219877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,238 DEBUG Processing 527/1125 atomic regions from SNP 157912 to 158512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,325 DEBUG Processing 722/848 atomic regions from SNP 216303 to 216903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,419 DEBUG Processing 170/230 atomic regions from SNP 50811 to 51411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,444 DEBUG Processing 485/642 atomic regions from SNP 145241 to 145841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,455 DEBUG Processing 732/885 atomic regions from SNP 219577 to 220177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,473 DEBUG Processing 541/1013 atomic regions from SNP 162229 to 162829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,553 DEBUG Processing 528/1125 atomic regions from SNP 158212 to 158812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,577 DEBUG Processing 723/848 atomic regions from SNP 216603 to 217203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,651 DEBUG Processing 171/230 atomic regions from SNP 51111 to 51711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,695 DEBUG Processing 733/885 atomic regions from SNP 219877 to 220477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,725 DEBUG Processing 486/642 atomic regions from SNP 145541 to 146141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,744 DEBUG Processing 542/1013 atomic regions from SNP 162529 to 163129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,825 DEBUG Processing 724/848 atomic regions from SNP 216903 to 217503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,869 DEBUG Processing 529/1125 atomic regions from SNP 158512 to 159112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,891 DEBUG Processing 172/230 atomic regions from SNP 51411 to 52011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,941 DEBUG Processing 734/885 atomic regions from SNP 220177 to 220777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,001 DEBUG Processing 487/642 atomic regions from SNP 145841 to 146441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,015 DEBUG Processing 543/1013 atomic regions from SNP 162829 to 163429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,068 DEBUG Processing 725/848 atomic regions from SNP 217203 to 217803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,127 DEBUG Processing 173/230 atomic regions from SNP 51711 to 52311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,192 DEBUG Processing 530/1125 atomic regions from SNP 158812 to 159412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,193 DEBUG Processing 735/885 atomic regions from SNP 220477 to 221077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,275 DEBUG Processing 488/642 atomic regions from SNP 146141 to 146741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,290 DEBUG Processing 544/1013 atomic regions from SNP 163129 to 163729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,306 DEBUG Processing 726/848 atomic regions from SNP 217503 to 218103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,360 DEBUG Processing 174/230 atomic regions from SNP 52011 to 52611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,448 DEBUG Processing 736/885 atomic regions from SNP 220777 to 221377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,488 DEBUG Processing 531/1125 atomic regions from SNP 159112 to 159712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,550 DEBUG Processing 727/848 atomic regions from SNP 217803 to 218403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,558 DEBUG Processing 489/642 atomic regions from SNP 146441 to 147041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,565 DEBUG Processing 545/1013 atomic regions from SNP 163429 to 164029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,589 DEBUG Processing 175/230 atomic regions from SNP 52311 to 52911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,695 DEBUG Processing 737/885 atomic regions from SNP 221077 to 221677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,770 DEBUG Processing 532/1125 atomic regions from SNP 159412 to 160012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,805 DEBUG Processing 728/848 atomic regions from SNP 218103 to 218703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,827 DEBUG Processing 176/230 atomic regions from SNP 52611 to 53211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,839 DEBUG Processing 490/642 atomic regions from SNP 146741 to 147341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,847 DEBUG Processing 546/1013 atomic regions from SNP 163729 to 164329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,963 DEBUG Processing 738/885 atomic regions from SNP 221377 to 221977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,062 DEBUG Processing 729/848 atomic regions from SNP 218403 to 219003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,063 DEBUG Processing 533/1125 atomic regions from SNP 159712 to 160312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,075 DEBUG Processing 177/230 atomic regions from SNP 52911 to 53511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,118 DEBUG Processing 491/642 atomic regions from SNP 147041 to 147641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,135 DEBUG Processing 547/1013 atomic regions from SNP 164029 to 164629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,206 DEBUG Processing 739/885 atomic regions from SNP 221677 to 222277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,309 DEBUG Processing 730/848 atomic regions from SNP 218703 to 219303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,311 DEBUG Processing 178/230 atomic regions from SNP 53211 to 53811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,344 DEBUG Processing 534/1125 atomic regions from SNP 160012 to 160612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,394 DEBUG Processing 492/642 atomic regions from SNP 147341 to 147941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,415 DEBUG Processing 548/1013 atomic regions from SNP 164329 to 164929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,453 DEBUG Processing 740/885 atomic regions from SNP 221977 to 222577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,548 DEBUG Processing 731/848 atomic regions from SNP 219003 to 219603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,561 DEBUG Processing 179/230 atomic regions from SNP 53511 to 54111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,615 DEBUG Processing 535/1125 atomic regions from SNP 160312 to 160912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,662 DEBUG Processing 493/642 atomic regions from SNP 147641 to 148241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,690 DEBUG Processing 549/1013 atomic regions from SNP 164629 to 165229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,701 DEBUG Processing 741/885 atomic regions from SNP 222277 to 222877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,788 DEBUG Processing 732/848 atomic regions from SNP 219303 to 219903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,803 DEBUG Processing 180/230 atomic regions from SNP 53811 to 54411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,888 DEBUG Processing 536/1125 atomic regions from SNP 160612 to 161212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,931 DEBUG Processing 494/642 atomic regions from SNP 147941 to 148541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,953 DEBUG Processing 742/885 atomic regions from SNP 222577 to 223177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,964 DEBUG Processing 550/1013 atomic regions from SNP 164929 to 165529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,029 DEBUG Processing 733/848 atomic regions from SNP 219603 to 220203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,031 DEBUG Processing 181/230 atomic regions from SNP 54111 to 54711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,159 DEBUG Processing 537/1125 atomic regions from SNP 160912 to 161512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,196 DEBUG Processing 495/642 atomic regions from SNP 148241 to 148841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,201 DEBUG Processing 743/885 atomic regions from SNP 222877 to 223477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,241 DEBUG Processing 551/1013 atomic regions from SNP 165229 to 165829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,266 DEBUG Processing 182/230 atomic regions from SNP 54411 to 55011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,273 DEBUG Processing 734/848 atomic regions from SNP 219903 to 220503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,438 DEBUG Processing 538/1125 atomic regions from SNP 161212 to 161812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,451 DEBUG Processing 744/885 atomic regions from SNP 223177 to 223777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,461 DEBUG Processing 496/642 atomic regions from SNP 148541 to 149141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,503 DEBUG Processing 183/230 atomic regions from SNP 54711 to 55311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,514 DEBUG Processing 735/848 atomic regions from SNP 220203 to 220803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,519 DEBUG Processing 552/1013 atomic regions from SNP 165529 to 166129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,701 DEBUG Processing 745/885 atomic regions from SNP 223477 to 224077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,715 DEBUG Processing 497/642 atomic regions from SNP 148841 to 149441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,720 DEBUG Processing 539/1125 atomic regions from SNP 161512 to 162112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,740 DEBUG Processing 184/230 atomic regions from SNP 55011 to 55611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,755 DEBUG Processing 736/848 atomic regions from SNP 220503 to 221103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,804 DEBUG Processing 553/1013 atomic regions from SNP 165829 to 166429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,952 DEBUG Processing 746/885 atomic regions from SNP 223777 to 224377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,966 DEBUG Processing 498/642 atomic regions from SNP 149141 to 149741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,977 DEBUG Processing 185/230 atomic regions from SNP 55311 to 55911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,997 DEBUG Processing 737/848 atomic regions from SNP 220803 to 221403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,998 DEBUG Processing 540/1125 atomic regions from SNP 161812 to 162412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,083 DEBUG Processing 554/1013 atomic regions from SNP 166129 to 166729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,202 DEBUG Processing 747/885 atomic regions from SNP 224077 to 224677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,207 DEBUG Processing 186/230 atomic regions from SNP 55611 to 56211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,217 DEBUG Processing 499/642 atomic regions from SNP 149441 to 150041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,239 DEBUG Processing 738/848 atomic regions from SNP 221103 to 221703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,277 DEBUG Processing 541/1125 atomic regions from SNP 162112 to 162712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,353 DEBUG Processing 555/1013 atomic regions from SNP 166429 to 167029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,440 DEBUG Processing 187/230 atomic regions from SNP 55911 to 56511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,447 DEBUG Processing 748/885 atomic regions from SNP 224377 to 224977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,469 DEBUG Processing 500/642 atomic regions from SNP 149741 to 150341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,483 DEBUG Processing 739/848 atomic regions from SNP 221403 to 222003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,554 DEBUG Processing 542/1125 atomic regions from SNP 162412 to 163012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,622 DEBUG Processing 556/1013 atomic regions from SNP 166729 to 167329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,670 DEBUG Processing 188/230 atomic regions from SNP 56211 to 56811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,722 DEBUG Processing 749/885 atomic regions from SNP 224677 to 225277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,724 DEBUG Processing 501/642 atomic regions from SNP 150041 to 150641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,729 DEBUG Processing 740/848 atomic regions from SNP 221703 to 222303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,829 DEBUG Processing 543/1125 atomic regions from SNP 162712 to 163312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,894 DEBUG Processing 557/1013 atomic regions from SNP 167029 to 167629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,920 DEBUG Processing 189/230 atomic regions from SNP 56511 to 57111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,976 DEBUG Processing 741/848 atomic regions from SNP 222003 to 222603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,006 DEBUG Processing 750/885 atomic regions from SNP 224977 to 225577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,008 DEBUG Processing 502/642 atomic regions from SNP 150341 to 150941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,108 DEBUG Processing 544/1125 atomic regions from SNP 163012 to 163612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,168 DEBUG Processing 558/1013 atomic regions from SNP 167329 to 167929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,182 DEBUG Processing 190/230 atomic regions from SNP 56811 to 57411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,225 DEBUG Processing 742/848 atomic regions from SNP 222303 to 222903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,285 DEBUG Processing 751/885 atomic regions from SNP 225277 to 225877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,288 DEBUG Processing 503/642 atomic regions from SNP 150641 to 151241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,382 DEBUG Processing 545/1125 atomic regions from SNP 163312 to 163912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,428 DEBUG Processing 191/230 atomic regions from SNP 57111 to 57711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,444 DEBUG Processing 559/1013 atomic regions from SNP 167629 to 168229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,496 DEBUG Processing 743/848 atomic regions from SNP 222603 to 223203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,569 DEBUG Processing 752/885 atomic regions from SNP 225577 to 226177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,571 DEBUG Processing 504/642 atomic regions from SNP 150941 to 151541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,655 DEBUG Processing 546/1125 atomic regions from SNP 163612 to 164212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,669 DEBUG Processing 192/230 atomic regions from SNP 57411 to 58011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,722 DEBUG Processing 560/1013 atomic regions from SNP 167929 to 168529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,777 DEBUG Processing 744/848 atomic regions from SNP 222903 to 223503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,844 DEBUG Processing 753/885 atomic regions from SNP 225877 to 226477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,851 DEBUG Processing 505/642 atomic regions from SNP 151241 to 151841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,908 DEBUG Processing 193/230 atomic regions from SNP 57711 to 58311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,928 DEBUG Processing 547/1125 atomic regions from SNP 163912 to 164512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,004 DEBUG Processing 561/1013 atomic regions from SNP 168229 to 168829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,048 DEBUG Processing 745/848 atomic regions from SNP 223203 to 223803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,097 DEBUG Processing 754/885 atomic regions from SNP 226177 to 226777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,139 DEBUG Processing 506/642 atomic regions from SNP 151541 to 152141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,145 DEBUG Processing 194/230 atomic regions from SNP 58011 to 58611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,205 DEBUG Processing 548/1125 atomic regions from SNP 164212 to 164812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,292 DEBUG Processing 562/1013 atomic regions from SNP 168529 to 169129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,325 DEBUG Processing 746/848 atomic regions from SNP 223503 to 224103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,349 DEBUG Processing 755/885 atomic regions from SNP 226477 to 227077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,378 DEBUG Processing 195/230 atomic regions from SNP 58311 to 58911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,418 DEBUG Processing 507/642 atomic regions from SNP 151841 to 152441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,483 DEBUG Processing 549/1125 atomic regions from SNP 164512 to 165112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,574 DEBUG Processing 563/1013 atomic regions from SNP 168829 to 169429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,589 DEBUG Processing 747/848 atomic regions from SNP 223803 to 224403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,599 DEBUG Processing 756/885 atomic regions from SNP 226777 to 227377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,623 DEBUG Processing 196/230 atomic regions from SNP 58611 to 59211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,689 DEBUG Processing 508/642 atomic regions from SNP 152141 to 152741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,762 DEBUG Processing 550/1125 atomic regions from SNP 164812 to 165412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,846 DEBUG Processing 564/1013 atomic regions from SNP 169129 to 169729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,863 DEBUG Processing 748/848 atomic regions from SNP 224103 to 224703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,875 DEBUG Processing 197/230 atomic regions from SNP 58911 to 59511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,877 DEBUG Processing 757/885 atomic regions from SNP 227077 to 227677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,971 DEBUG Processing 509/642 atomic regions from SNP 152441 to 153041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,064 DEBUG Processing 551/1125 atomic regions from SNP 165112 to 165712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,112 DEBUG Processing 565/1013 atomic regions from SNP 169429 to 170029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,114 DEBUG Processing 198/230 atomic regions from SNP 59211 to 59811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,141 DEBUG Processing 758/885 atomic regions from SNP 227377 to 227977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,144 DEBUG Processing 749/848 atomic regions from SNP 224403 to 225003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,254 DEBUG Processing 510/642 atomic regions from SNP 152741 to 153341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,338 DEBUG Processing 552/1125 atomic regions from SNP 165412 to 166012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,347 DEBUG Processing 199/230 atomic regions from SNP 59511 to 60111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,384 DEBUG Processing 566/1013 atomic regions from SNP 169729 to 170329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,396 DEBUG Processing 759/885 atomic regions from SNP 227677 to 228277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,419 DEBUG Processing 750/848 atomic regions from SNP 224703 to 225303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,530 DEBUG Processing 511/642 atomic regions from SNP 153041 to 153641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,584 DEBUG Processing 200/230 atomic regions from SNP 59811 to 60411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,617 DEBUG Processing 553/1125 atomic regions from SNP 165712 to 166312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,651 DEBUG Processing 760/885 atomic regions from SNP 227977 to 228577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,661 DEBUG Processing 567/1013 atomic regions from SNP 170029 to 170629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,689 DEBUG Processing 751/848 atomic regions from SNP 225003 to 225603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,813 DEBUG Processing 512/642 atomic regions from SNP 153341 to 153941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,826 DEBUG Processing 201/230 atomic regions from SNP 60111 to 60711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,900 DEBUG Processing 554/1125 atomic regions from SNP 166012 to 166612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,905 DEBUG Processing 761/885 atomic regions from SNP 228277 to 228877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,934 DEBUG Processing 568/1013 atomic regions from SNP 170329 to 170929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,941 DEBUG Processing 752/848 atomic regions from SNP 225303 to 225903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,053 DEBUG Processing 202/230 atomic regions from SNP 60411 to 61011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,089 DEBUG Processing 513/642 atomic regions from SNP 153641 to 154241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,160 DEBUG Processing 762/885 atomic regions from SNP 228577 to 229177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,186 DEBUG Processing 555/1125 atomic regions from SNP 166312 to 166912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,211 DEBUG Processing 753/848 atomic regions from SNP 225603 to 226203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,212 DEBUG Processing 569/1013 atomic regions from SNP 170629 to 171229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,284 DEBUG Processing 203/230 atomic regions from SNP 60711 to 61311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,374 DEBUG Processing 514/642 atomic regions from SNP 153941 to 154541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,412 DEBUG Processing 763/885 atomic regions from SNP 228877 to 229477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,470 DEBUG Processing 556/1125 atomic regions from SNP 166612 to 167212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,497 DEBUG Processing 754/848 atomic regions from SNP 225903 to 226503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,497 DEBUG Processing 570/1013 atomic regions from SNP 170929 to 171529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,516 DEBUG Processing 204/230 atomic regions from SNP 61011 to 61611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,649 DEBUG Processing 515/642 atomic regions from SNP 154241 to 154841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,661 DEBUG Processing 764/885 atomic regions from SNP 229177 to 229777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,760 DEBUG Processing 557/1125 atomic regions from SNP 166912 to 167512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,762 DEBUG Processing 205/230 atomic regions from SNP 61311 to 61911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,785 DEBUG Processing 571/1013 atomic regions from SNP 171229 to 171829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,785 DEBUG Processing 755/848 atomic regions from SNP 226203 to 226803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,904 DEBUG Processing 765/885 atomic regions from SNP 229477 to 230077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,916 DEBUG Processing 516/642 atomic regions from SNP 154541 to 155141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,008 DEBUG Processing 206/230 atomic regions from SNP 61611 to 62211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,054 DEBUG Processing 558/1125 atomic regions from SNP 167212 to 167812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,062 DEBUG Processing 756/848 atomic regions from SNP 226503 to 227103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,062 DEBUG Processing 572/1013 atomic regions from SNP 171529 to 172129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,145 DEBUG Processing 766/885 atomic regions from SNP 229777 to 230377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,192 DEBUG Processing 517/642 atomic regions from SNP 154841 to 155441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,246 DEBUG Processing 207/230 atomic regions from SNP 61911 to 62511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,313 DEBUG Processing 757/848 atomic regions from SNP 226803 to 227403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,341 DEBUG Processing 559/1125 atomic regions from SNP 167512 to 168112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,345 DEBUG Processing 573/1013 atomic regions from SNP 171829 to 172429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,398 DEBUG Processing 767/885 atomic regions from SNP 230077 to 230677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,485 DEBUG Processing 518/642 atomic regions from SNP 155141 to 155741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,487 DEBUG Processing 208/230 atomic regions from SNP 62211 to 62811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,562 DEBUG Processing 758/848 atomic regions from SNP 227103 to 227703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,625 DEBUG Processing 560/1125 atomic regions from SNP 167812 to 168412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,628 DEBUG Processing 574/1013 atomic regions from SNP 172129 to 172729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,658 DEBUG Processing 768/885 atomic regions from SNP 230377 to 230977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,728 DEBUG Processing 209/230 atomic regions from SNP 62511 to 63111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,778 DEBUG Processing 519/642 atomic regions from SNP 155441 to 156041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,810 DEBUG Processing 759/848 atomic regions from SNP 227403 to 228003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,910 DEBUG Processing 575/1013 atomic regions from SNP 172429 to 173029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,911 DEBUG Processing 561/1125 atomic regions from SNP 168112 to 168712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,917 DEBUG Processing 769/885 atomic regions from SNP 230677 to 231277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,979 DEBUG Processing 210/230 atomic regions from SNP 62811 to 63411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,057 DEBUG Processing 760/848 atomic regions from SNP 227703 to 228303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,067 DEBUG Processing 520/642 atomic regions from SNP 155741 to 156341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,172 DEBUG Processing 770/885 atomic regions from SNP 230977 to 231577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,192 DEBUG Processing 576/1013 atomic regions from SNP 172729 to 173329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,195 DEBUG Processing 562/1125 atomic regions from SNP 168412 to 169012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,235 DEBUG Processing 211/230 atomic regions from SNP 63111 to 63711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,331 DEBUG Processing 761/848 atomic regions from SNP 228003 to 228603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,355 DEBUG Processing 521/642 atomic regions from SNP 156041 to 156641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,428 DEBUG Processing 771/885 atomic regions from SNP 231277 to 231877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,477 DEBUG Processing 577/1013 atomic regions from SNP 173029 to 173629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,479 DEBUG Processing 563/1125 atomic regions from SNP 168712 to 169312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,481 DEBUG Processing 212/230 atomic regions from SNP 63411 to 64011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,599 DEBUG Processing 762/848 atomic regions from SNP 228303 to 228903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,644 DEBUG Processing 522/642 atomic regions from SNP 156341 to 156941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,681 DEBUG Processing 772/885 atomic regions from SNP 231577 to 232177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,728 DEBUG Processing 213/230 atomic regions from SNP 63711 to 64311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,762 DEBUG Processing 564/1125 atomic regions from SNP 169012 to 169612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,763 DEBUG Processing 578/1013 atomic regions from SNP 173329 to 173929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,868 DEBUG Processing 763/848 atomic regions from SNP 228603 to 229203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,933 DEBUG Processing 523/642 atomic regions from SNP 156641 to 157241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,933 DEBUG Processing 773/885 atomic regions from SNP 231877 to 232477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,973 DEBUG Processing 214/230 atomic regions from SNP 64011 to 64611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,044 DEBUG Processing 579/1013 atomic regions from SNP 173629 to 174229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,048 DEBUG Processing 565/1125 atomic regions from SNP 169312 to 169912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,148 DEBUG Processing 764/848 atomic regions from SNP 228903 to 229503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,196 DEBUG Processing 774/885 atomic regions from SNP 232177 to 232777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,222 DEBUG Processing 215/230 atomic regions from SNP 64311 to 64911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,228 DEBUG Processing 524/642 atomic regions from SNP 156941 to 157541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,325 DEBUG Processing 580/1013 atomic regions from SNP 173929 to 174529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,331 DEBUG Processing 566/1125 atomic regions from SNP 169612 to 170212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,431 DEBUG Processing 765/848 atomic regions from SNP 229203 to 229803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,444 DEBUG Processing 775/885 atomic regions from SNP 232477 to 233077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,475 DEBUG Processing 216/230 atomic regions from SNP 64611 to 65211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,529 DEBUG Processing 525/642 atomic regions from SNP 157241 to 157841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,608 DEBUG Processing 581/1013 atomic regions from SNP 174229 to 174829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,614 DEBUG Processing 567/1125 atomic regions from SNP 169912 to 170512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,694 DEBUG Processing 776/885 atomic regions from SNP 232777 to 233377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,706 DEBUG Processing 766/848 atomic regions from SNP 229503 to 230103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,709 DEBUG Processing 217/230 atomic regions from SNP 64911 to 65511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,820 DEBUG Processing 526/642 atomic regions from SNP 157541 to 158141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,890 DEBUG Processing 582/1013 atomic regions from SNP 174529 to 175129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,898 DEBUG Processing 568/1125 atomic regions from SNP 170212 to 170812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,942 DEBUG Processing 218/230 atomic regions from SNP 65211 to 65811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,953 DEBUG Processing 777/885 atomic regions from SNP 233077 to 233677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,975 DEBUG Processing 767/848 atomic regions from SNP 229803 to 230403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,104 DEBUG Processing 527/642 atomic regions from SNP 157841 to 158441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,188 DEBUG Processing 569/1125 atomic regions from SNP 170512 to 171112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,188 DEBUG Processing 219/230 atomic regions from SNP 65511 to 66111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,196 DEBUG Processing 583/1013 atomic regions from SNP 174829 to 175429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,217 DEBUG Processing 778/885 atomic regions from SNP 233377 to 233977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,262 DEBUG Processing 768/848 atomic regions from SNP 230103 to 230703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,394 DEBUG Processing 528/642 atomic regions from SNP 158141 to 158741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,440 DEBUG Processing 220/230 atomic regions from SNP 65811 to 66411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,481 DEBUG Processing 570/1125 atomic regions from SNP 170812 to 171412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,482 DEBUG Processing 779/885 atomic regions from SNP 233677 to 234277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,518 DEBUG Processing 584/1013 atomic regions from SNP 175129 to 175729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,520 DEBUG Processing 769/848 atomic regions from SNP 230403 to 231003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,682 DEBUG Processing 529/642 atomic regions from SNP 158441 to 159041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,687 DEBUG Processing 221/230 atomic regions from SNP 66111 to 66711 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,746 DEBUG Processing 780/885 atomic regions from SNP 233977 to 234577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,772 DEBUG Processing 571/1125 atomic regions from SNP 171112 to 171712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,780 DEBUG Processing 770/848 atomic regions from SNP 230703 to 231303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,844 DEBUG Processing 585/1013 atomic regions from SNP 175429 to 176029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,916 DEBUG Processing 222/230 atomic regions from SNP 66411 to 67011 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,965 DEBUG Processing 530/642 atomic regions from SNP 158741 to 159341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,994 DEBUG Processing 781/885 atomic regions from SNP 234277 to 234877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,035 DEBUG Processing 771/848 atomic regions from SNP 231003 to 231603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,058 DEBUG Processing 572/1125 atomic regions from SNP 171412 to 172012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,157 DEBUG Processing 223/230 atomic regions from SNP 66711 to 67311 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,167 DEBUG Processing 586/1013 atomic regions from SNP 175729 to 176329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,241 DEBUG Processing 782/885 atomic regions from SNP 234577 to 235177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,245 DEBUG Processing 531/642 atomic regions from SNP 159041 to 159641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,282 DEBUG Processing 772/848 atomic regions from SNP 231303 to 231903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,345 DEBUG Processing 573/1125 atomic regions from SNP 171712 to 172312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,399 DEBUG Processing 224/230 atomic regions from SNP 67011 to 67611 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,478 DEBUG Processing 587/1013 atomic regions from SNP 176029 to 176629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,493 DEBUG Processing 783/885 atomic regions from SNP 234877 to 235477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,512 DEBUG Processing 532/642 atomic regions from SNP 159341 to 159941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,548 DEBUG Processing 773/848 atomic regions from SNP 231603 to 232203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,626 DEBUG Processing 574/1125 atomic regions from SNP 172012 to 172612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,632 DEBUG Processing 225/230 atomic regions from SNP 67311 to 67911 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,749 DEBUG Processing 784/885 atomic regions from SNP 235177 to 235777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,773 DEBUG Processing 588/1013 atomic regions from SNP 176329 to 176929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,795 DEBUG Processing 533/642 atomic regions from SNP 159641 to 160241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,837 DEBUG Processing 774/848 atomic regions from SNP 231903 to 232503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,869 DEBUG Processing 226/230 atomic regions from SNP 67611 to 68211 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,905 DEBUG Processing 575/1125 atomic regions from SNP 172312 to 172912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,006 DEBUG Processing 785/885 atomic regions from SNP 235477 to 236077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,069 DEBUG Processing 589/1013 atomic regions from SNP 176629 to 177229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,081 DEBUG Processing 534/642 atomic regions from SNP 159941 to 160541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,114 DEBUG Processing 227/230 atomic regions from SNP 67911 to 68511 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,122 DEBUG Processing 775/848 atomic regions from SNP 232203 to 232803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,181 DEBUG Processing 576/1125 atomic regions from SNP 172612 to 173212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,257 DEBUG Processing 786/885 atomic regions from SNP 235777 to 236377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,355 DEBUG Processing 590/1013 atomic regions from SNP 176929 to 177529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,365 DEBUG Processing 228/230 atomic regions from SNP 68211 to 68811 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,367 DEBUG Processing 535/642 atomic regions from SNP 160241 to 160841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,385 DEBUG Processing 776/848 atomic regions from SNP 232503 to 233103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,465 DEBUG Processing 577/1125 atomic regions from SNP 172912 to 173512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,504 DEBUG Processing 787/885 atomic regions from SNP 236077 to 236677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,615 DEBUG Processing 229/230 atomic regions from SNP 68511 to 69111 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,641 DEBUG Processing 591/1013 atomic regions from SNP 177229 to 177829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,648 DEBUG Processing 536/642 atomic regions from SNP 160541 to 161141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,665 DEBUG Processing 777/848 atomic regions from SNP 232803 to 233403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,750 DEBUG Processing 578/1125 atomic regions from SNP 173212 to 173812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,757 DEBUG Processing 788/885 atomic regions from SNP 236377 to 236977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,863 DEBUG Processing 230/230 atomic regions from SNP 68811 to 69411 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,933 DEBUG Processing 537/642 atomic regions from SNP 160841 to 161441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,934 DEBUG Processing 592/1013 atomic regions from SNP 177529 to 178129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,951 DEBUG Processing 778/848 atomic regions from SNP 233103 to 233703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,006 DEBUG Unique SNPs positions in subchromosome 6: 69412 2025-01-31 09:47:29,010 DEBUG Processing 789/885 atomic regions from SNP 236677 to 237277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,035 DEBUG Processing 579/1125 atomic regions from SNP 173512 to 174112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,143 DEBUG Subchromosome time: 63.51973842829466, subchromosome SNPs: 69412 2025-01-31 09:47:29,143 DEBUG Estimated BADs: [1.71, 8.54, 3.42, 6.84, 0.85, 1.71, 5.13, 0.85, 0.00, 0.00, 1.71, 5.13, 0.85, 1.71, 0.85, 3.42, 17.09, 1.71, 8.54, 3.42, 0.85, 15.38, 1.71, 6.84, 1.71, 3.42, 1.71, 0.34, 0.00, 0.43, 3.42, 1.71, 0.85, 3.42, 0.85, 1.71, 17.09] SNP counts: [3472, 3831, 4083, 3167, 5711, 5681, 1535, 5333, 2, 55, 2200, 3291, 3325, 2829, 8917, 4228, 161, 34957, 2352, 4574, 23478, 113, 2745, 1861, 6531, 12700, 11567, 14934, 3, 12529, 4545, 9761, 9215, 2964, 11450, 18907, 41] SNP IDs counts: [3472, 3831, 4083, 3167, 5711, 5681, 1535, 5333, 2, 55, 2200, 3291, 3325, 2829, 8917, 4228, 161, 34957, 2352, 4574, 23478, 113, 2745, 1861, 6531, 12700, 11567, 14934, 3, 12529, 4545, 9761, 9215, 2964, 11450, 18907, 41] Critical gap: 758901bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.31Mbp, 9.74Mbp, 12.00Mbp, 13.72Mbp, 17.15Mbp, 20.62Mbp, 21.49Mbp, 26.92Mbp[1.11Mbp], 28.03Mbp[0.99Mbp], 30.07Mbp[1.07Mbp], 36.55Mbp, 38.87Mbp, 40.94Mbp, 42.56Mbp, 48.03Mbp, 50.55Mbp, 50.64Mbp, 72.91Mbp, 74.34Mbp, 77.42Mbp, 92.00Mbp, 92.08Mbp, 93.72Mbp, 94.80Mbp, 98.91Mbp, 106.12Mbp, 113.39Mbp, 124.25Mbp[0.88Mbp], 125.13Mbp[0.89Mbp], 134.06Mbp, 136.97Mbp, 142.67Mbp, 150.43Mbp, 152.14Mbp, 159.25Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:47:29,143 DEBUG chrX time: 63.52033878862858 s 2025-01-31 09:47:29,216 DEBUG Processing 593/1013 atomic regions from SNP 177829 to 178429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,233 DEBUG Processing 538/642 atomic regions from SNP 161141 to 161741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,234 DEBUG Processing 779/848 atomic regions from SNP 233403 to 234003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,260 DEBUG Processing 790/885 atomic regions from SNP 236977 to 237577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,314 DEBUG Processing 580/1125 atomic regions from SNP 173812 to 174412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,330 DEBUG chrX: Fitting background model for 34 segments 2025-01-31 09:47:29,496 DEBUG Processing 594/1013 atomic regions from SNP 178129 to 178729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,504 DEBUG Processing 780/848 atomic regions from SNP 233703 to 234303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,516 DEBUG Processing 791/885 atomic regions from SNP 237277 to 237877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,516 DEBUG Processing 539/642 atomic regions from SNP 161441 to 162041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,592 DEBUG Processing 581/1125 atomic regions from SNP 174112 to 174712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,767 DEBUG Processing 792/885 atomic regions from SNP 237577 to 238177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,780 DEBUG Processing 781/848 atomic regions from SNP 234003 to 234603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,782 DEBUG Processing 595/1013 atomic regions from SNP 178429 to 179029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,802 DEBUG Processing 540/642 atomic regions from SNP 161741 to 162341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,877 DEBUG Processing 582/1125 atomic regions from SNP 174412 to 175012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,019 DEBUG Processing 793/885 atomic regions from SNP 237877 to 238477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,063 DEBUG Processing 782/848 atomic regions from SNP 234303 to 234903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,070 DEBUG Processing 596/1013 atomic regions from SNP 178729 to 179329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,096 DEBUG Processing 541/642 atomic regions from SNP 162041 to 162641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,162 DEBUG Processing 583/1125 atomic regions from SNP 174712 to 175312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,273 DEBUG Processing 794/885 atomic regions from SNP 238177 to 238777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,354 DEBUG Processing 783/848 atomic regions from SNP 234603 to 235203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,358 DEBUG Processing 597/1013 atomic regions from SNP 179029 to 179629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,377 DEBUG Processing 542/642 atomic regions from SNP 162341 to 162941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,447 DEBUG Processing 584/1125 atomic regions from SNP 175012 to 175612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,524 DEBUG Processing 795/885 atomic regions from SNP 238477 to 239077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,624 DEBUG Processing 784/848 atomic regions from SNP 234903 to 235503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,649 DEBUG Processing 598/1013 atomic regions from SNP 179329 to 179929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,670 DEBUG Processing 543/642 atomic regions from SNP 162641 to 163241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,726 DEBUG Processing 585/1125 atomic regions from SNP 175312 to 175912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,771 DEBUG Processing 796/885 atomic regions from SNP 238777 to 239377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,865 DEBUG Processing 785/848 atomic regions from SNP 235203 to 235803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,944 DEBUG Processing 599/1013 atomic regions from SNP 179629 to 180229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,965 DEBUG Processing 544/642 atomic regions from SNP 162941 to 163541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,007 DEBUG Processing 586/1125 atomic regions from SNP 175612 to 176212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,026 DEBUG Processing 797/885 atomic regions from SNP 239077 to 239677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,107 DEBUG Processing 786/848 atomic regions from SNP 235503 to 236103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,234 DEBUG Processing 600/1013 atomic regions from SNP 179929 to 180529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,242 DEBUG Processing 545/642 atomic regions from SNP 163241 to 163841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,284 DEBUG Processing 798/885 atomic regions from SNP 239377 to 239977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,293 DEBUG Processing 587/1125 atomic regions from SNP 175912 to 176512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,358 DEBUG Processing 787/848 atomic regions from SNP 235803 to 236403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,510 DEBUG Processing 546/642 atomic regions from SNP 163541 to 164141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,521 DEBUG Processing 601/1013 atomic regions from SNP 180229 to 180829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,545 DEBUG Processing 799/885 atomic regions from SNP 239677 to 240277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,581 DEBUG Processing 588/1125 atomic regions from SNP 176212 to 176812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,611 DEBUG Processing 788/848 atomic regions from SNP 236103 to 236703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,794 DEBUG Processing 547/642 atomic regions from SNP 163841 to 164441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,800 DEBUG Processing 800/885 atomic regions from SNP 239977 to 240577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,809 DEBUG Processing 602/1013 atomic regions from SNP 180529 to 181129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,862 DEBUG Processing 789/848 atomic regions from SNP 236403 to 237003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,866 DEBUG Processing 589/1125 atomic regions from SNP 176512 to 177112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,051 DEBUG Processing 801/885 atomic regions from SNP 240277 to 240877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,075 DEBUG Processing 548/642 atomic regions from SNP 164141 to 164741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,097 DEBUG Processing 603/1013 atomic regions from SNP 180829 to 181429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,112 DEBUG Processing 790/848 atomic regions from SNP 236703 to 237303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,152 DEBUG Processing 590/1125 atomic regions from SNP 176812 to 177412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,297 DEBUG Processing 802/885 atomic regions from SNP 240577 to 241177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,353 DEBUG Processing 791/848 atomic regions from SNP 237003 to 237603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,358 DEBUG Processing 549/642 atomic regions from SNP 164441 to 165041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,384 DEBUG Processing 604/1013 atomic regions from SNP 181129 to 181729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,429 DEBUG Processing 591/1125 atomic regions from SNP 177112 to 177712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,543 DEBUG Processing 803/885 atomic regions from SNP 240877 to 241477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,593 DEBUG Processing 792/848 atomic regions from SNP 237303 to 237903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,650 DEBUG Processing 550/642 atomic regions from SNP 164741 to 165341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,665 DEBUG Processing 605/1013 atomic regions from SNP 181429 to 182029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,707 DEBUG Processing 592/1125 atomic regions from SNP 177412 to 178012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,792 DEBUG Processing 804/885 atomic regions from SNP 241177 to 241777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,840 DEBUG Processing 793/848 atomic regions from SNP 237603 to 238203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,936 DEBUG Processing 551/642 atomic regions from SNP 165041 to 165641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,950 DEBUG Processing 606/1013 atomic regions from SNP 181729 to 182329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,983 DEBUG Processing 593/1125 atomic regions from SNP 177712 to 178312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,038 DEBUG Processing 805/885 atomic regions from SNP 241477 to 242077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,114 DEBUG Processing 794/848 atomic regions from SNP 237903 to 238503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,221 DEBUG Processing 552/642 atomic regions from SNP 165341 to 165941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,248 DEBUG Processing 607/1013 atomic regions from SNP 182029 to 182629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,266 DEBUG Processing 594/1125 atomic regions from SNP 178012 to 178612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,293 DEBUG Processing 806/885 atomic regions from SNP 241777 to 242377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,385 DEBUG Processing 795/848 atomic regions from SNP 238203 to 238803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,503 DEBUG Processing 553/642 atomic regions from SNP 165641 to 166241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,539 DEBUG Processing 608/1013 atomic regions from SNP 182329 to 182929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,549 DEBUG Processing 807/885 atomic regions from SNP 242077 to 242677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,553 DEBUG Processing 595/1125 atomic regions from SNP 178312 to 178912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,663 DEBUG Processing 796/848 atomic regions from SNP 238503 to 239103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,778 DEBUG Processing 554/642 atomic regions from SNP 165941 to 166541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,809 DEBUG Processing 808/885 atomic regions from SNP 242377 to 242977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,828 DEBUG Processing 609/1013 atomic regions from SNP 182629 to 183229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,851 DEBUG Processing 596/1125 atomic regions from SNP 178612 to 179212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,940 DEBUG Processing 797/848 atomic regions from SNP 238803 to 239403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,035 DEBUG Processing 555/642 atomic regions from SNP 166241 to 166841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,061 DEBUG Processing 809/885 atomic regions from SNP 242677 to 243277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,115 DEBUG Processing 610/1013 atomic regions from SNP 182929 to 183529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,163 DEBUG Processing 597/1125 atomic regions from SNP 178912 to 179512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,220 DEBUG Processing 798/848 atomic regions from SNP 239103 to 239703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,284 DEBUG Processing 556/642 atomic regions from SNP 166541 to 167141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,308 DEBUG Processing 810/885 atomic regions from SNP 242977 to 243577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,403 DEBUG Processing 611/1013 atomic regions from SNP 183229 to 183829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,488 DEBUG Processing 598/1125 atomic regions from SNP 179212 to 179812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,510 DEBUG Processing 799/848 atomic regions from SNP 239403 to 240003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,539 DEBUG Processing 557/642 atomic regions from SNP 166841 to 167441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,564 DEBUG Processing 811/885 atomic regions from SNP 243277 to 243877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,689 DEBUG Processing 612/1013 atomic regions from SNP 183529 to 184129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,803 DEBUG Processing 800/848 atomic regions from SNP 239703 to 240303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,808 DEBUG Processing 599/1125 atomic regions from SNP 179512 to 180112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,816 DEBUG Processing 558/642 atomic regions from SNP 167141 to 167741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,841 DEBUG Processing 812/885 atomic regions from SNP 243577 to 244177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,971 DEBUG Processing 613/1013 atomic regions from SNP 183829 to 184429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,101 DEBUG Processing 801/848 atomic regions from SNP 240003 to 240603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,106 DEBUG Processing 559/642 atomic regions from SNP 167441 to 168041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,108 DEBUG Processing 600/1125 atomic regions from SNP 179812 to 180412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,111 DEBUG Processing 813/885 atomic regions from SNP 243877 to 244477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,247 DEBUG Processing 614/1013 atomic regions from SNP 184129 to 184729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,382 DEBUG Processing 814/885 atomic regions from SNP 244177 to 244777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,398 DEBUG Processing 560/642 atomic regions from SNP 167741 to 168341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,399 DEBUG Processing 802/848 atomic regions from SNP 240303 to 240903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,420 DEBUG Processing 601/1125 atomic regions from SNP 180112 to 180712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,524 DEBUG Processing 615/1013 atomic regions from SNP 184429 to 185029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,650 DEBUG Processing 815/885 atomic regions from SNP 244477 to 245077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,692 DEBUG Processing 803/848 atomic regions from SNP 240603 to 241203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,697 DEBUG Processing 561/642 atomic regions from SNP 168041 to 168641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,749 DEBUG Processing 602/1125 atomic regions from SNP 180412 to 181012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,805 DEBUG Processing 616/1013 atomic regions from SNP 184729 to 185329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,914 DEBUG Processing 816/885 atomic regions from SNP 244777 to 245377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,972 DEBUG Processing 804/848 atomic regions from SNP 240903 to 241503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,991 DEBUG Processing 562/642 atomic regions from SNP 168341 to 168941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,048 DEBUG Processing 603/1125 atomic regions from SNP 180712 to 181312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,095 DEBUG Processing 617/1013 atomic regions from SNP 185029 to 185629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,177 DEBUG Processing 817/885 atomic regions from SNP 245077 to 245677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,265 DEBUG Processing 805/848 atomic regions from SNP 241203 to 241803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,271 DEBUG Processing 563/642 atomic regions from SNP 168641 to 169241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,343 DEBUG Processing 604/1125 atomic regions from SNP 181012 to 181612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,385 DEBUG Processing 618/1013 atomic regions from SNP 185329 to 185929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,441 DEBUG Processing 818/885 atomic regions from SNP 245377 to 245977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,538 DEBUG Processing 806/848 atomic regions from SNP 241503 to 242103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,552 DEBUG Processing 564/642 atomic regions from SNP 168941 to 169541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,635 DEBUG Processing 605/1125 atomic regions from SNP 181312 to 181912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,675 DEBUG Processing 619/1013 atomic regions from SNP 185629 to 186229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,710 DEBUG Processing 819/885 atomic regions from SNP 245677 to 246277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,791 DEBUG Processing 807/848 atomic regions from SNP 241803 to 242403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,838 DEBUG Processing 565/642 atomic regions from SNP 169241 to 169841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,928 DEBUG Processing 606/1125 atomic regions from SNP 181612 to 182212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,961 DEBUG Processing 620/1013 atomic regions from SNP 185929 to 186529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,978 DEBUG Processing 820/885 atomic regions from SNP 245977 to 246577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,068 DEBUG Processing 808/848 atomic regions from SNP 242103 to 242703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,129 DEBUG Processing 566/642 atomic regions from SNP 169541 to 170141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,234 DEBUG Processing 607/1125 atomic regions from SNP 181912 to 182512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,250 DEBUG Processing 621/1013 atomic regions from SNP 186229 to 186829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,254 DEBUG Processing 821/885 atomic regions from SNP 246277 to 246877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,349 DEBUG Processing 809/848 atomic regions from SNP 242403 to 243003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,398 DEBUG Processing 567/642 atomic regions from SNP 169841 to 170441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,511 DEBUG Processing 822/885 atomic regions from SNP 246577 to 247177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,518 DEBUG Processing 608/1125 atomic regions from SNP 182212 to 182812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,538 DEBUG Processing 622/1013 atomic regions from SNP 186529 to 187129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,637 DEBUG Processing 810/848 atomic regions from SNP 242703 to 243303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,665 DEBUG Processing 568/642 atomic regions from SNP 170141 to 170741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,768 DEBUG Processing 823/885 atomic regions from SNP 246877 to 247477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,803 DEBUG Processing 609/1125 atomic regions from SNP 182512 to 183112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,821 DEBUG Processing 623/1013 atomic regions from SNP 186829 to 187429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,932 DEBUG Processing 569/642 atomic regions from SNP 170441 to 171041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,940 DEBUG Processing 811/848 atomic regions from SNP 243003 to 243603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,027 DEBUG Processing 824/885 atomic regions from SNP 247177 to 247777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,085 DEBUG Processing 610/1125 atomic regions from SNP 182812 to 183412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,123 DEBUG Processing 624/1013 atomic regions from SNP 187129 to 187729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,199 DEBUG Processing 570/642 atomic regions from SNP 170741 to 171341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,204 DEBUG Processing 812/848 atomic regions from SNP 243303 to 243903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,286 DEBUG Processing 825/885 atomic regions from SNP 247477 to 248077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,374 DEBUG Processing 611/1125 atomic regions from SNP 183112 to 183712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,414 DEBUG Processing 625/1013 atomic regions from SNP 187429 to 188029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,463 DEBUG Processing 813/848 atomic regions from SNP 243603 to 244203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,469 DEBUG Processing 571/642 atomic regions from SNP 171041 to 171641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,542 DEBUG Processing 826/885 atomic regions from SNP 247777 to 248377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,667 DEBUG Processing 612/1125 atomic regions from SNP 183412 to 184012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,704 DEBUG Processing 626/1013 atomic regions from SNP 187729 to 188329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,716 DEBUG Processing 814/848 atomic regions from SNP 243903 to 244503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,740 DEBUG Processing 572/642 atomic regions from SNP 171341 to 171941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,810 DEBUG Processing 827/885 atomic regions from SNP 248077 to 248677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,961 DEBUG Processing 613/1125 atomic regions from SNP 183712 to 184312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,970 DEBUG Processing 815/848 atomic regions from SNP 244203 to 244803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,002 DEBUG Processing 627/1013 atomic regions from SNP 188029 to 188629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,014 DEBUG Processing 573/642 atomic regions from SNP 171641 to 172241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,067 DEBUG Processing 828/885 atomic regions from SNP 248377 to 248977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,252 DEBUG Processing 614/1125 atomic regions from SNP 184012 to 184612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,254 DEBUG Processing 816/848 atomic regions from SNP 244503 to 245103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,298 DEBUG Processing 628/1013 atomic regions from SNP 188329 to 188929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,308 DEBUG Processing 574/642 atomic regions from SNP 171941 to 172541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,325 DEBUG Processing 829/885 atomic regions from SNP 248677 to 249277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,513 DEBUG Processing 817/848 atomic regions from SNP 244803 to 245403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,539 DEBUG Processing 615/1125 atomic regions from SNP 184312 to 184912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,584 DEBUG Processing 830/885 atomic regions from SNP 248977 to 249577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,587 DEBUG Processing 575/642 atomic regions from SNP 172241 to 172841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,591 DEBUG Processing 629/1013 atomic regions from SNP 188629 to 189229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,773 DEBUG Processing 818/848 atomic regions from SNP 245103 to 245703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,829 DEBUG Processing 616/1125 atomic regions from SNP 184612 to 185212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,850 DEBUG Processing 831/885 atomic regions from SNP 249277 to 249877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,854 DEBUG Processing 576/642 atomic regions from SNP 172541 to 173141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,895 DEBUG Processing 630/1013 atomic regions from SNP 188929 to 189529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,050 DEBUG Processing 819/848 atomic regions from SNP 245403 to 246003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,127 DEBUG Processing 832/885 atomic regions from SNP 249577 to 250177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,129 DEBUG Processing 617/1125 atomic regions from SNP 184912 to 185512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,130 DEBUG Processing 577/642 atomic regions from SNP 172841 to 173441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,188 DEBUG Processing 631/1013 atomic regions from SNP 189229 to 189829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,329 DEBUG Processing 820/848 atomic regions from SNP 245703 to 246303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,392 DEBUG Processing 833/885 atomic regions from SNP 249877 to 250477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,398 DEBUG Processing 578/642 atomic regions from SNP 173141 to 173741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,423 DEBUG Processing 618/1125 atomic regions from SNP 185212 to 185812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,479 DEBUG Processing 632/1013 atomic regions from SNP 189529 to 190129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,598 DEBUG Processing 821/848 atomic regions from SNP 246003 to 246603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,655 DEBUG Processing 834/885 atomic regions from SNP 250177 to 250777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,674 DEBUG Processing 579/642 atomic regions from SNP 173441 to 174041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,714 DEBUG Processing 619/1125 atomic regions from SNP 185512 to 186112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,770 DEBUG Processing 633/1013 atomic regions from SNP 189829 to 190429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,854 DEBUG Processing 822/848 atomic regions from SNP 246303 to 246903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,914 DEBUG Processing 835/885 atomic regions from SNP 250477 to 251077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,945 DEBUG Processing 580/642 atomic regions from SNP 173741 to 174341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,999 DEBUG Processing 620/1125 atomic regions from SNP 185812 to 186412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,094 DEBUG Processing 634/1013 atomic regions from SNP 190129 to 190729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,129 DEBUG Processing 823/848 atomic regions from SNP 246603 to 247203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,171 DEBUG Processing 836/885 atomic regions from SNP 250777 to 251377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,209 DEBUG Processing 581/642 atomic regions from SNP 174041 to 174641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,279 DEBUG Processing 621/1125 atomic regions from SNP 186112 to 186712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,399 DEBUG Processing 824/848 atomic regions from SNP 246903 to 247503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,412 DEBUG Processing 635/1013 atomic regions from SNP 190429 to 191029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,432 DEBUG Processing 837/885 atomic regions from SNP 251077 to 251677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,475 DEBUG Processing 582/642 atomic regions from SNP 174341 to 174941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,560 DEBUG Processing 622/1125 atomic regions from SNP 186412 to 187012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,656 DEBUG Processing 825/848 atomic regions from SNP 247203 to 247803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,699 DEBUG Processing 838/885 atomic regions from SNP 251377 to 251977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,718 DEBUG Processing 636/1013 atomic regions from SNP 190729 to 191329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,767 DEBUG Processing 583/642 atomic regions from SNP 174641 to 175241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,841 DEBUG Processing 623/1125 atomic regions from SNP 186712 to 187312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,917 DEBUG Processing 826/848 atomic regions from SNP 247503 to 248103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,965 DEBUG Processing 839/885 atomic regions from SNP 251677 to 252277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,019 DEBUG Processing 637/1013 atomic regions from SNP 191029 to 191629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,059 DEBUG Processing 584/642 atomic regions from SNP 174941 to 175541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,120 DEBUG Processing 624/1125 atomic regions from SNP 187012 to 187612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,163 DEBUG Processing 827/848 atomic regions from SNP 247803 to 248403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,223 DEBUG Processing 840/885 atomic regions from SNP 251977 to 252577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,316 DEBUG Processing 638/1013 atomic regions from SNP 191329 to 191929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,348 DEBUG Processing 585/642 atomic regions from SNP 175241 to 175841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,405 DEBUG Processing 625/1125 atomic regions from SNP 187312 to 187912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,412 DEBUG Processing 828/848 atomic regions from SNP 248103 to 248703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,478 DEBUG Processing 841/885 atomic regions from SNP 252277 to 252877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,615 DEBUG Processing 639/1013 atomic regions from SNP 191629 to 192229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,620 DEBUG Processing 586/642 atomic regions from SNP 175541 to 176141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,685 DEBUG Processing 829/848 atomic regions from SNP 248403 to 249003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,699 DEBUG Processing 626/1125 atomic regions from SNP 187612 to 188212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,734 DEBUG Processing 842/885 atomic regions from SNP 252577 to 253177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,891 DEBUG Processing 587/642 atomic regions from SNP 175841 to 176441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,919 DEBUG Processing 640/1013 atomic regions from SNP 191929 to 192529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,974 DEBUG Processing 830/848 atomic regions from SNP 248703 to 249303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,997 DEBUG Processing 627/1125 atomic regions from SNP 187912 to 188512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,999 DEBUG Processing 843/885 atomic regions from SNP 252877 to 253477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,159 DEBUG Processing 588/642 atomic regions from SNP 176141 to 176741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,213 DEBUG Processing 641/1013 atomic regions from SNP 192229 to 192829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,248 DEBUG Processing 831/848 atomic regions from SNP 249003 to 249603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,271 DEBUG Processing 844/885 atomic regions from SNP 253177 to 253777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,295 DEBUG Processing 628/1125 atomic regions from SNP 188212 to 188812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,421 DEBUG Processing 589/642 atomic regions from SNP 176441 to 177041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,500 DEBUG Processing 642/1013 atomic regions from SNP 192529 to 193129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,521 DEBUG Processing 832/848 atomic regions from SNP 249303 to 249903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,536 DEBUG Processing 845/885 atomic regions from SNP 253477 to 254077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,585 DEBUG Processing 629/1125 atomic regions from SNP 188512 to 189112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,695 DEBUG Processing 590/642 atomic regions from SNP 176741 to 177341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,789 DEBUG Processing 643/1013 atomic regions from SNP 192829 to 193429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,796 DEBUG Processing 846/885 atomic regions from SNP 253777 to 254377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,808 DEBUG Processing 833/848 atomic regions from SNP 249603 to 250203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,875 DEBUG Processing 630/1125 atomic regions from SNP 188812 to 189412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,000 DEBUG Processing 591/642 atomic regions from SNP 177041 to 177641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,071 DEBUG Processing 847/885 atomic regions from SNP 254077 to 254677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,092 DEBUG Processing 644/1013 atomic regions from SNP 193129 to 193729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,101 DEBUG Processing 834/848 atomic regions from SNP 249903 to 250503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,171 DEBUG Processing 631/1125 atomic regions from SNP 189112 to 189712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,303 DEBUG Processing 592/642 atomic regions from SNP 177341 to 177941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,334 DEBUG Processing 848/885 atomic regions from SNP 254377 to 254977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,384 DEBUG Processing 835/848 atomic regions from SNP 250203 to 250803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,388 DEBUG Processing 645/1013 atomic regions from SNP 193429 to 194029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,461 DEBUG Processing 632/1125 atomic regions from SNP 189412 to 190012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,602 DEBUG Processing 849/885 atomic regions from SNP 254677 to 255277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,604 DEBUG Processing 593/642 atomic regions from SNP 177641 to 178241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,644 DEBUG Processing 836/848 atomic regions from SNP 250503 to 251103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,685 DEBUG Processing 646/1013 atomic regions from SNP 193729 to 194329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,753 DEBUG Processing 633/1125 atomic regions from SNP 189712 to 190312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,866 DEBUG Processing 850/885 atomic regions from SNP 254977 to 255577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,902 DEBUG Processing 594/642 atomic regions from SNP 177941 to 178541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,931 DEBUG Processing 837/848 atomic regions from SNP 250803 to 251403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,981 DEBUG Processing 647/1013 atomic regions from SNP 194029 to 194629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,045 DEBUG Processing 634/1125 atomic regions from SNP 190012 to 190612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,125 DEBUG Processing 851/885 atomic regions from SNP 255277 to 255877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,200 DEBUG Processing 595/642 atomic regions from SNP 178241 to 178841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,203 DEBUG Processing 838/848 atomic regions from SNP 251103 to 251703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,276 DEBUG Processing 648/1013 atomic regions from SNP 194329 to 194929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,335 DEBUG Processing 635/1125 atomic regions from SNP 190312 to 190912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,386 DEBUG Processing 852/885 atomic regions from SNP 255577 to 256177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,458 DEBUG Processing 839/848 atomic regions from SNP 251403 to 252003 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,498 DEBUG Processing 596/642 atomic regions from SNP 178541 to 179141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,574 DEBUG Processing 649/1013 atomic regions from SNP 194629 to 195229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,623 DEBUG Processing 636/1125 atomic regions from SNP 190612 to 191212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,653 DEBUG Processing 853/885 atomic regions from SNP 255877 to 256477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,717 DEBUG Processing 840/848 atomic regions from SNP 251703 to 252303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,798 DEBUG Processing 597/642 atomic regions from SNP 178841 to 179441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,874 DEBUG Processing 650/1013 atomic regions from SNP 194929 to 195529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,913 DEBUG Processing 637/1125 atomic regions from SNP 190912 to 191512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,925 DEBUG Processing 854/885 atomic regions from SNP 256177 to 256777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,982 DEBUG Processing 841/848 atomic regions from SNP 252003 to 252603 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,090 DEBUG Processing 598/642 atomic regions from SNP 179141 to 179741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,177 DEBUG Processing 651/1013 atomic regions from SNP 195229 to 195829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,200 DEBUG Processing 855/885 atomic regions from SNP 256477 to 257077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,211 DEBUG Processing 638/1125 atomic regions from SNP 191212 to 191812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,264 DEBUG Processing 842/848 atomic regions from SNP 252303 to 252903 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,380 DEBUG Processing 599/642 atomic regions from SNP 179441 to 180041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,467 DEBUG Processing 856/885 atomic regions from SNP 256777 to 257377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,474 DEBUG Processing 652/1013 atomic regions from SNP 195529 to 196129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,511 DEBUG Processing 639/1125 atomic regions from SNP 191512 to 192112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,545 DEBUG Processing 843/848 atomic regions from SNP 252603 to 253203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,662 DEBUG Processing 600/642 atomic regions from SNP 179741 to 180341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,730 DEBUG Processing 857/885 atomic regions from SNP 257077 to 257677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,763 DEBUG Processing 653/1013 atomic regions from SNP 195829 to 196429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,798 DEBUG Processing 844/848 atomic regions from SNP 252903 to 253503 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,803 DEBUG Processing 640/1125 atomic regions from SNP 191812 to 192412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,958 DEBUG Processing 601/642 atomic regions from SNP 180041 to 180641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,994 DEBUG Processing 858/885 atomic regions from SNP 257377 to 257977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,052 DEBUG Processing 654/1013 atomic regions from SNP 196129 to 196729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,053 DEBUG Processing 845/848 atomic regions from SNP 253203 to 253803 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,094 DEBUG Processing 641/1125 atomic regions from SNP 192112 to 192712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,253 DEBUG Processing 602/642 atomic regions from SNP 180341 to 180941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,260 DEBUG Processing 859/885 atomic regions from SNP 257677 to 258277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,314 DEBUG Processing 846/848 atomic regions from SNP 253503 to 254103 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,342 DEBUG Processing 655/1013 atomic regions from SNP 196429 to 197029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,385 DEBUG Processing 642/1125 atomic regions from SNP 192412 to 193012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,524 DEBUG Processing 860/885 atomic regions from SNP 257977 to 258577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,536 DEBUG Processing 603/642 atomic regions from SNP 180641 to 181241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,585 DEBUG Processing 847/848 atomic regions from SNP 253803 to 254403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,632 DEBUG Processing 656/1013 atomic regions from SNP 196729 to 197329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,680 DEBUG Processing 643/1125 atomic regions from SNP 192712 to 193312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,785 DEBUG Processing 861/885 atomic regions from SNP 258277 to 258877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,816 DEBUG Processing 604/642 atomic regions from SNP 180941 to 181541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,837 DEBUG Processing 848/848 atomic regions from SNP 254103 to 254703 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,922 DEBUG Processing 657/1013 atomic regions from SNP 197029 to 197629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,974 DEBUG Processing 644/1125 atomic regions from SNP 193012 to 193612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,991 DEBUG Unique SNPs positions in subchromosome 1: 254704 2025-01-31 09:47:48,052 DEBUG Processing 862/885 atomic regions from SNP 258577 to 259177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,126 DEBUG Processing 605/642 atomic regions from SNP 181241 to 181841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,231 DEBUG Processing 658/1013 atomic regions from SNP 197329 to 197929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,283 DEBUG Processing 645/1125 atomic regions from SNP 193312 to 193912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,315 DEBUG Processing 863/885 atomic regions from SNP 258877 to 259477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,415 DEBUG Processing 606/642 atomic regions from SNP 181541 to 182141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,514 DEBUG Processing 659/1013 atomic regions from SNP 197629 to 198229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,568 DEBUG Processing 646/1125 atomic regions from SNP 193612 to 194212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,573 DEBUG Processing 864/885 atomic regions from SNP 259177 to 259777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,698 DEBUG Processing 607/642 atomic regions from SNP 181841 to 182441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,797 DEBUG Processing 660/1013 atomic regions from SNP 197929 to 198529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,833 DEBUG Processing 865/885 atomic regions from SNP 259477 to 260077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,856 DEBUG Processing 647/1125 atomic regions from SNP 193912 to 194512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,982 DEBUG Processing 608/642 atomic regions from SNP 182141 to 182741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,082 DEBUG Processing 661/1013 atomic regions from SNP 198229 to 198829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,087 DEBUG Processing 866/885 atomic regions from SNP 259777 to 260377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,141 DEBUG Processing 648/1125 atomic regions from SNP 194212 to 194812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,251 DEBUG Processing 609/642 atomic regions from SNP 182441 to 183041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,339 DEBUG Processing 867/885 atomic regions from SNP 260077 to 260677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,375 DEBUG Processing 662/1013 atomic regions from SNP 198529 to 199129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,421 DEBUG Processing 649/1125 atomic regions from SNP 194512 to 195112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,530 DEBUG Processing 610/642 atomic regions from SNP 182741 to 183341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,594 DEBUG Processing 868/885 atomic regions from SNP 260377 to 260977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,660 DEBUG Processing 663/1013 atomic regions from SNP 198829 to 199429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,704 DEBUG Processing 650/1125 atomic regions from SNP 194812 to 195412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,809 DEBUG Processing 611/642 atomic regions from SNP 183041 to 183641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,854 DEBUG Processing 869/885 atomic regions from SNP 260677 to 261277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,948 DEBUG Processing 664/1013 atomic regions from SNP 199129 to 199729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,985 DEBUG Processing 651/1125 atomic regions from SNP 195112 to 195712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,062 DEBUG Processing 612/642 atomic regions from SNP 183341 to 183941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,109 DEBUG Processing 870/885 atomic regions from SNP 260977 to 261577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,231 DEBUG Processing 665/1013 atomic regions from SNP 199429 to 200029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,267 DEBUG Processing 652/1125 atomic regions from SNP 195412 to 196012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,312 DEBUG Processing 613/642 atomic regions from SNP 183641 to 184241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,366 DEBUG Processing 871/885 atomic regions from SNP 261277 to 261877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,519 DEBUG Processing 666/1013 atomic regions from SNP 199729 to 200329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,555 DEBUG Processing 653/1125 atomic regions from SNP 195712 to 196312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,576 DEBUG Processing 614/642 atomic regions from SNP 183941 to 184541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,623 DEBUG Processing 872/885 atomic regions from SNP 261577 to 262177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,807 DEBUG Processing 667/1013 atomic regions from SNP 200029 to 200629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,840 DEBUG Processing 615/642 atomic regions from SNP 184241 to 184841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,847 DEBUG Processing 654/1125 atomic regions from SNP 196012 to 196612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,879 DEBUG Processing 873/885 atomic regions from SNP 261877 to 262477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,099 DEBUG Processing 668/1013 atomic regions from SNP 200329 to 200929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,135 DEBUG Processing 655/1125 atomic regions from SNP 196312 to 196912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,136 DEBUG Processing 874/885 atomic regions from SNP 262177 to 262777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,137 DEBUG Processing 616/642 atomic regions from SNP 184541 to 185141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,387 DEBUG Processing 669/1013 atomic regions from SNP 200629 to 201229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,397 DEBUG Processing 875/885 atomic regions from SNP 262477 to 263077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,427 DEBUG Processing 656/1125 atomic regions from SNP 196612 to 197212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,433 DEBUG Processing 617/642 atomic regions from SNP 184841 to 185441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,660 DEBUG Processing 876/885 atomic regions from SNP 262777 to 263377 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,675 DEBUG Processing 670/1013 atomic regions from SNP 200929 to 201529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,722 DEBUG Processing 657/1125 atomic regions from SNP 196912 to 197512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,726 DEBUG Processing 618/642 atomic regions from SNP 185141 to 185741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,926 DEBUG Processing 877/885 atomic regions from SNP 263077 to 263677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,975 DEBUG Processing 671/1013 atomic regions from SNP 201229 to 201829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,022 DEBUG Processing 619/642 atomic regions from SNP 185441 to 186041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,025 DEBUG Processing 658/1125 atomic regions from SNP 197212 to 197812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,198 DEBUG Processing 878/885 atomic regions from SNP 263377 to 263977 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,304 DEBUG Processing 620/642 atomic regions from SNP 185741 to 186341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,312 DEBUG Processing 672/1013 atomic regions from SNP 201529 to 202129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,327 DEBUG Processing 659/1125 atomic regions from SNP 197512 to 198112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,463 DEBUG Processing 879/885 atomic regions from SNP 263677 to 264277 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,580 DEBUG Processing 621/642 atomic regions from SNP 186041 to 186641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,632 DEBUG Processing 660/1125 atomic regions from SNP 197812 to 198412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,655 DEBUG Processing 673/1013 atomic regions from SNP 201829 to 202429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,717 DEBUG Processing 880/885 atomic regions from SNP 263977 to 264577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,842 DEBUG Processing 622/642 atomic regions from SNP 186341 to 186941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,923 DEBUG Processing 661/1125 atomic regions from SNP 198112 to 198712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,975 DEBUG Processing 881/885 atomic regions from SNP 264277 to 264877 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,975 DEBUG Processing 674/1013 atomic regions from SNP 202129 to 202729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,098 DEBUG Processing 623/642 atomic regions from SNP 186641 to 187241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,204 DEBUG Processing 662/1125 atomic regions from SNP 198412 to 199012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,236 DEBUG Processing 882/885 atomic regions from SNP 264577 to 265177 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,292 DEBUG Processing 675/1013 atomic regions from SNP 202429 to 203029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,355 DEBUG Processing 624/642 atomic regions from SNP 186941 to 187541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,491 DEBUG Processing 663/1125 atomic regions from SNP 198712 to 199312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,501 DEBUG Processing 883/885 atomic regions from SNP 264877 to 265477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,615 DEBUG Processing 676/1013 atomic regions from SNP 202729 to 203329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,624 DEBUG Processing 625/642 atomic regions from SNP 187241 to 187841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,774 DEBUG Processing 884/885 atomic regions from SNP 265177 to 265777 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,794 DEBUG Processing 664/1125 atomic regions from SNP 199012 to 199612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,898 DEBUG Processing 626/642 atomic regions from SNP 187541 to 188141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,927 DEBUG Processing 677/1013 atomic regions from SNP 203029 to 203629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,042 DEBUG Processing 885/885 atomic regions from SNP 265477 to 266077 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,129 DEBUG Processing 665/1125 atomic regions from SNP 199312 to 199912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,158 DEBUG Processing 627/642 atomic regions from SNP 187841 to 188441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,197 DEBUG Unique SNPs positions in subchromosome 1: 266078 2025-01-31 09:47:54,240 DEBUG Processing 678/1013 atomic regions from SNP 203329 to 203929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,416 DEBUG Processing 628/642 atomic regions from SNP 188141 to 188741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,447 DEBUG Processing 666/1125 atomic regions from SNP 199612 to 200212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,558 DEBUG Processing 679/1013 atomic regions from SNP 203629 to 204229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,700 DEBUG Processing 629/642 atomic regions from SNP 188441 to 189041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:54,739 DEBUG Processing 667/1125 atomic regions from SNP 199912 to 200512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,866 DEBUG Processing 680/1013 atomic regions from SNP 203929 to 204529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,997 DEBUG Processing 630/642 atomic regions from SNP 188741 to 189341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,034 DEBUG Processing 668/1125 atomic regions from SNP 200212 to 200812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,169 DEBUG Processing 681/1013 atomic regions from SNP 204229 to 204829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,286 DEBUG Processing 631/642 atomic regions from SNP 189041 to 189641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,330 DEBUG Processing 669/1125 atomic regions from SNP 200512 to 201112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,478 DEBUG Processing 682/1013 atomic regions from SNP 204529 to 205129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,560 DEBUG Processing 632/642 atomic regions from SNP 189341 to 189941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,624 DEBUG Processing 670/1125 atomic regions from SNP 200812 to 201412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,763 DEBUG Processing 683/1013 atomic regions from SNP 204829 to 205429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,834 DEBUG Processing 633/642 atomic regions from SNP 189641 to 190241 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:55,910 DEBUG Processing 671/1125 atomic regions from SNP 201112 to 201712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,063 DEBUG Processing 684/1013 atomic regions from SNP 205129 to 205729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,108 DEBUG Processing 634/642 atomic regions from SNP 189941 to 190541 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,227 DEBUG Processing 672/1125 atomic regions from SNP 201412 to 202012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,376 DEBUG Processing 685/1013 atomic regions from SNP 205429 to 206029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,396 DEBUG Processing 635/642 atomic regions from SNP 190241 to 190841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,534 DEBUG Processing 673/1125 atomic regions from SNP 201712 to 202312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,666 DEBUG Processing 686/1013 atomic regions from SNP 205729 to 206329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,697 DEBUG Processing 636/642 atomic regions from SNP 190541 to 191141 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:56,820 DEBUG Processing 674/1125 atomic regions from SNP 202012 to 202612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,979 DEBUG Processing 687/1013 atomic regions from SNP 206029 to 206629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,991 DEBUG Processing 637/642 atomic regions from SNP 190841 to 191441 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,123 DEBUG Processing 675/1125 atomic regions from SNP 202312 to 202912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,314 DEBUG Processing 638/642 atomic regions from SNP 191141 to 191741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,319 DEBUG Processing 688/1013 atomic regions from SNP 206329 to 206929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,463 DEBUG Processing 676/1125 atomic regions from SNP 202612 to 203212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,664 DEBUG Processing 639/642 atomic regions from SNP 191441 to 192041 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:57,699 DEBUG Processing 689/1013 atomic regions from SNP 206629 to 207229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,844 DEBUG Processing 677/1125 atomic regions from SNP 202912 to 203512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,056 DEBUG Processing 640/642 atomic regions from SNP 191741 to 192341 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,123 DEBUG Processing 690/1013 atomic regions from SNP 206929 to 207529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,261 DEBUG Processing 678/1125 atomic regions from SNP 203212 to 203812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,468 DEBUG Processing 641/642 atomic regions from SNP 192041 to 192641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,544 DEBUG Processing 691/1013 atomic regions from SNP 207229 to 207829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,647 DEBUG Processing 679/1125 atomic regions from SNP 203512 to 204112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,770 DEBUG Processing 642/642 atomic regions from SNP 192341 to 192941 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:58,832 DEBUG Processing 692/1013 atomic regions from SNP 207529 to 208129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,944 DEBUG Unique SNPs positions in subchromosome 2: 192942 2025-01-31 09:47:58,952 DEBUG Processing 680/1125 atomic regions from SNP 203812 to 204412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,120 DEBUG Processing 693/1013 atomic regions from SNP 207829 to 208429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,235 DEBUG Processing 681/1125 atomic regions from SNP 204112 to 204712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,458 DEBUG Processing 694/1013 atomic regions from SNP 208129 to 208729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,538 DEBUG Processing 682/1125 atomic regions from SNP 204412 to 205012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,787 DEBUG Processing 695/1013 atomic regions from SNP 208429 to 209029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,849 DEBUG Processing 683/1125 atomic regions from SNP 204712 to 205312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,188 DEBUG Processing 696/1013 atomic regions from SNP 208729 to 209329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,197 DEBUG Processing 684/1125 atomic regions from SNP 205012 to 205612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,586 DEBUG Processing 697/1013 atomic regions from SNP 209029 to 209629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,603 DEBUG Processing 685/1125 atomic regions from SNP 205312 to 205912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,007 DEBUG Processing 698/1013 atomic regions from SNP 209329 to 209929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,026 DEBUG Processing 686/1125 atomic regions from SNP 205612 to 206212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,449 DEBUG Processing 699/1013 atomic regions from SNP 209629 to 210229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,472 DEBUG Processing 687/1125 atomic regions from SNP 205912 to 206512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,750 DEBUG Processing 700/1013 atomic regions from SNP 209929 to 210529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,783 DEBUG Processing 688/1125 atomic regions from SNP 206212 to 206812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,055 DEBUG Processing 701/1013 atomic regions from SNP 210229 to 210829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,072 DEBUG Processing 689/1125 atomic regions from SNP 206512 to 207112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,350 DEBUG Processing 702/1013 atomic regions from SNP 210529 to 211129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,357 DEBUG Processing 690/1125 atomic regions from SNP 206812 to 207412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,633 DEBUG Processing 703/1013 atomic regions from SNP 210829 to 211429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,635 DEBUG Processing 691/1125 atomic regions from SNP 207112 to 207712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,917 DEBUG Processing 704/1013 atomic regions from SNP 211129 to 211729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,927 DEBUG Processing 692/1125 atomic regions from SNP 207412 to 208012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,211 DEBUG Processing 705/1013 atomic regions from SNP 211429 to 212029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,224 DEBUG Processing 693/1125 atomic regions from SNP 207712 to 208312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,501 DEBUG Processing 706/1013 atomic regions from SNP 211729 to 212329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,506 DEBUG Processing 694/1125 atomic regions from SNP 208012 to 208612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,791 DEBUG Processing 695/1125 atomic regions from SNP 208312 to 208912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,791 DEBUG Processing 707/1013 atomic regions from SNP 212029 to 212629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,099 DEBUG Processing 708/1013 atomic regions from SNP 212329 to 212929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,102 DEBUG Processing 696/1125 atomic regions from SNP 208612 to 209212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,388 DEBUG Processing 697/1125 atomic regions from SNP 208912 to 209512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,391 DEBUG Processing 709/1013 atomic regions from SNP 212629 to 213229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,672 DEBUG Processing 698/1125 atomic regions from SNP 209212 to 209812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,676 DEBUG Processing 710/1013 atomic regions from SNP 212929 to 213529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,947 DEBUG Processing 699/1125 atomic regions from SNP 209512 to 210112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,957 DEBUG Processing 711/1013 atomic regions from SNP 213229 to 213829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,227 DEBUG Processing 700/1125 atomic regions from SNP 209812 to 210412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,240 DEBUG Processing 712/1013 atomic regions from SNP 213529 to 214129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,511 DEBUG Processing 701/1125 atomic regions from SNP 210112 to 210712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,530 DEBUG Processing 713/1013 atomic regions from SNP 213829 to 214429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,787 DEBUG Processing 702/1125 atomic regions from SNP 210412 to 211012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,815 DEBUG Processing 714/1013 atomic regions from SNP 214129 to 214729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,065 DEBUG Processing 703/1125 atomic regions from SNP 210712 to 211312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,116 DEBUG Processing 715/1013 atomic regions from SNP 214429 to 215029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,339 DEBUG Processing 704/1125 atomic regions from SNP 211012 to 211612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,400 DEBUG Processing 716/1013 atomic regions from SNP 214729 to 215329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,610 DEBUG Processing 705/1125 atomic regions from SNP 211312 to 211912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,683 DEBUG Processing 717/1013 atomic regions from SNP 215029 to 215629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,880 DEBUG Processing 706/1125 atomic regions from SNP 211612 to 212212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,964 DEBUG Processing 718/1013 atomic regions from SNP 215329 to 215929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,177 DEBUG Processing 707/1125 atomic regions from SNP 211912 to 212512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,244 DEBUG Processing 719/1013 atomic regions from SNP 215629 to 216229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,482 DEBUG Processing 708/1125 atomic regions from SNP 212212 to 212812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,530 DEBUG Processing 720/1013 atomic regions from SNP 215929 to 216529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,754 DEBUG Processing 709/1125 atomic regions from SNP 212512 to 213112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,827 DEBUG Processing 721/1013 atomic regions from SNP 216229 to 216829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,035 DEBUG Processing 710/1125 atomic regions from SNP 212812 to 213412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,120 DEBUG Processing 722/1013 atomic regions from SNP 216529 to 217129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,318 DEBUG Processing 711/1125 atomic regions from SNP 213112 to 213712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,439 DEBUG Processing 723/1013 atomic regions from SNP 216829 to 217429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,617 DEBUG Processing 712/1125 atomic regions from SNP 213412 to 214012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,743 DEBUG Processing 724/1013 atomic regions from SNP 217129 to 217729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,896 DEBUG Processing 713/1125 atomic regions from SNP 213712 to 214312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,063 DEBUG Processing 725/1013 atomic regions from SNP 217429 to 218029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,176 DEBUG Processing 714/1125 atomic regions from SNP 214012 to 214612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,377 DEBUG Processing 726/1013 atomic regions from SNP 217729 to 218329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,452 DEBUG Processing 715/1125 atomic regions from SNP 214312 to 214912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,681 DEBUG Processing 727/1013 atomic regions from SNP 218029 to 218629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,733 DEBUG Processing 716/1125 atomic regions from SNP 214612 to 215212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,981 DEBUG Processing 728/1013 atomic regions from SNP 218329 to 218929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,020 DEBUG Processing 717/1125 atomic regions from SNP 214912 to 215512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,275 DEBUG Processing 729/1013 atomic regions from SNP 218629 to 219229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,310 DEBUG Processing 718/1125 atomic regions from SNP 215212 to 215812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,655 DEBUG Processing 730/1013 atomic regions from SNP 218929 to 219529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,664 DEBUG Processing 719/1125 atomic regions from SNP 215512 to 216112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,045 DEBUG Processing 720/1125 atomic regions from SNP 215812 to 216412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,060 DEBUG Processing 731/1013 atomic regions from SNP 219229 to 219829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,436 DEBUG Processing 721/1125 atomic regions from SNP 216112 to 216712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,481 DEBUG Processing 732/1013 atomic regions from SNP 219529 to 220129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,810 DEBUG Processing 722/1125 atomic regions from SNP 216412 to 217012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,830 DEBUG Processing 733/1013 atomic regions from SNP 219829 to 220429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,217 DEBUG Processing 734/1013 atomic regions from SNP 220129 to 220729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,227 DEBUG Processing 723/1125 atomic regions from SNP 216712 to 217312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,662 DEBUG Processing 724/1125 atomic regions from SNP 217012 to 217612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,665 DEBUG Processing 735/1013 atomic regions from SNP 220429 to 221029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,969 DEBUG Processing 725/1125 atomic regions from SNP 217312 to 217912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,982 DEBUG Processing 736/1013 atomic regions from SNP 220729 to 221329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,352 DEBUG Processing 726/1125 atomic regions from SNP 217612 to 218212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,375 DEBUG Processing 737/1013 atomic regions from SNP 221029 to 221629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,735 DEBUG Processing 727/1125 atomic regions from SNP 217912 to 218512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,759 DEBUG Processing 738/1013 atomic regions from SNP 221329 to 221929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,056 DEBUG Processing 728/1125 atomic regions from SNP 218212 to 218812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,087 DEBUG Processing 739/1013 atomic regions from SNP 221629 to 222229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,356 DEBUG Processing 729/1125 atomic regions from SNP 218512 to 219112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,383 DEBUG Processing 740/1013 atomic regions from SNP 221929 to 222529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,653 DEBUG Processing 730/1125 atomic regions from SNP 218812 to 219412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,674 DEBUG Processing 741/1013 atomic regions from SNP 222229 to 222829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,938 DEBUG Processing 731/1125 atomic regions from SNP 219112 to 219712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,964 DEBUG Processing 742/1013 atomic regions from SNP 222529 to 223129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,262 DEBUG Processing 732/1125 atomic regions from SNP 219412 to 220012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,304 DEBUG Processing 743/1013 atomic regions from SNP 222829 to 223429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,605 DEBUG Processing 733/1125 atomic regions from SNP 219712 to 220312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,701 DEBUG Processing 744/1013 atomic regions from SNP 223129 to 223729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,934 DEBUG Processing 734/1125 atomic regions from SNP 220012 to 220612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,031 DEBUG Processing 745/1013 atomic regions from SNP 223429 to 224029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,268 DEBUG Processing 735/1125 atomic regions from SNP 220312 to 220912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,381 DEBUG Processing 746/1013 atomic regions from SNP 223729 to 224329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,555 DEBUG Processing 736/1125 atomic regions from SNP 220612 to 221212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,687 DEBUG Processing 747/1013 atomic regions from SNP 224029 to 224629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,830 DEBUG Processing 737/1125 atomic regions from SNP 220912 to 221512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,992 DEBUG Processing 748/1013 atomic regions from SNP 224329 to 224929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,105 DEBUG Processing 738/1125 atomic regions from SNP 221212 to 221812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,317 DEBUG Processing 749/1013 atomic regions from SNP 224629 to 225229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,405 DEBUG Processing 739/1125 atomic regions from SNP 221512 to 222112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,622 DEBUG Processing 750/1013 atomic regions from SNP 224929 to 225529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,711 DEBUG Processing 740/1125 atomic regions from SNP 221812 to 222412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,921 DEBUG Processing 751/1013 atomic regions from SNP 225229 to 225829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,009 DEBUG Processing 741/1125 atomic regions from SNP 222112 to 222712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,201 DEBUG Processing 752/1013 atomic regions from SNP 225529 to 226129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,324 DEBUG Processing 742/1125 atomic regions from SNP 222412 to 223012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,487 DEBUG Processing 753/1013 atomic regions from SNP 225829 to 226429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,629 DEBUG Processing 743/1125 atomic regions from SNP 222712 to 223312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,777 DEBUG Processing 754/1013 atomic regions from SNP 226129 to 226729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,918 DEBUG Processing 744/1125 atomic regions from SNP 223012 to 223612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,065 DEBUG Processing 755/1013 atomic regions from SNP 226429 to 227029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,217 DEBUG Processing 745/1125 atomic regions from SNP 223312 to 223912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,356 DEBUG Processing 756/1013 atomic regions from SNP 226729 to 227329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,510 DEBUG Processing 746/1125 atomic regions from SNP 223612 to 224212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,649 DEBUG Processing 757/1013 atomic regions from SNP 227029 to 227629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,819 DEBUG Processing 747/1125 atomic regions from SNP 223912 to 224512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,942 DEBUG Processing 758/1013 atomic regions from SNP 227329 to 227929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,127 DEBUG Processing 748/1125 atomic regions from SNP 224212 to 224812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,233 DEBUG Processing 759/1013 atomic regions from SNP 227629 to 228229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,443 DEBUG Processing 749/1125 atomic regions from SNP 224512 to 225112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,512 DEBUG Processing 760/1013 atomic regions from SNP 227929 to 228529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,758 DEBUG Processing 750/1125 atomic regions from SNP 224812 to 225412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,778 DEBUG Processing 761/1013 atomic regions from SNP 228229 to 228829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,047 DEBUG Processing 762/1013 atomic regions from SNP 228529 to 229129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,069 DEBUG Processing 751/1125 atomic regions from SNP 225112 to 225712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,316 DEBUG Processing 763/1013 atomic regions from SNP 228829 to 229429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,364 DEBUG Processing 752/1125 atomic regions from SNP 225412 to 226012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,592 DEBUG Processing 764/1013 atomic regions from SNP 229129 to 229729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,666 DEBUG Processing 753/1125 atomic regions from SNP 225712 to 226312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,880 DEBUG Processing 765/1013 atomic regions from SNP 229429 to 230029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,991 DEBUG Processing 754/1125 atomic regions from SNP 226012 to 226612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,164 DEBUG Processing 766/1013 atomic regions from SNP 229729 to 230329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,301 DEBUG Processing 755/1125 atomic regions from SNP 226312 to 226912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,441 DEBUG Processing 767/1013 atomic regions from SNP 230029 to 230629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,601 DEBUG Processing 756/1125 atomic regions from SNP 226612 to 227212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,726 DEBUG Processing 768/1013 atomic regions from SNP 230329 to 230929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,944 DEBUG Processing 757/1125 atomic regions from SNP 226912 to 227512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,061 DEBUG Processing 769/1013 atomic regions from SNP 230629 to 231229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,262 DEBUG Processing 758/1125 atomic regions from SNP 227212 to 227812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,341 DEBUG Processing 770/1013 atomic regions from SNP 230929 to 231529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,421 DEBUG Subchromosome time: 214.93548936769366, subchromosome SNPs: 192942 2025-01-31 09:48:23,421 DEBUG Estimated BADs: [1.26, 7.57, 0.84, 2.52, 0.32, 1.26, 0.63, 2.52, 0.32, 7.57, 7.57, 2.52, 0.32, 1.26, 2.52, 5.05, 2.52, 0.50, 2.52, 0.63, 2.52, 0.32, 1.26, 0.42, 2.52, 7.57, 0.84, 0.25, 1.26, 20.20, 1.26, 7.57, 0.84, 5.05, 12.62, 7.57, 2.52, 0.63, 2.52, 7.57] SNP counts: [5147, 245, 3580, 13113, 3587, 8148, 15069, 6013, 6798, 3044, 8226, 4532, 3558, 7526, 4989, 2147, 3982, 29076, 4206, 4006, 5288, 5089, 4523, 2987, 16870, 5871, 3762, 2575, 1704, 226, 973, 10290, 1379, 16351, 8705, 10502, 3289, 1894, 2289, 16127] SNP IDs counts: [5147, 245, 3580, 13113, 3587, 8148, 15069, 6013, 6798, 3044, 8226, 4532, 3558, 7526, 4989, 2147, 3982, 29076, 4206, 4006, 5288, 5089, 4523, 2987, 16870, 5871, 3762, 2575, 1704, 226, 973, 10290, 1379, 16351, 8705, 10502, 3289, 1894, 2289, 16127] Critical gap: 689986bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 6.33Mbp, 6.46Mbp, 8.64Mbp, 16.19Mbp, 18.52Mbp, 23.48Mbp, 32.56Mbp, 35.97Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 47.17Mbp, 49.70Mbp, 51.92Mbp, 56.17Mbp, 58.89Mbp, 60.07Mbp, 63.98Mbp, 81.96Mbp, 84.32Mbp, 86.55Mbp, 89.61Mbp, 92.88Mbp, 95.49Mbp, 97.27Mbp, 106.56Mbp, 109.71Mbp, 111.91Mbp, 114.00Mbp, 114.99Mbp, 115.10Mbp, 115.78Mbp, 121.33Mbp, 122.87Mbp, 131.68Mbp, 136.24Mbp, 141.73Mbp, 143.49Mbp, 144.89Mbp, 147.85Mbp, 156.51Mbp] 2025-01-31 09:48:23,421 DEBUG chr4 time: 214.9360692128539 s 2025-01-31 09:48:23,573 DEBUG Processing 759/1125 atomic regions from SNP 227512 to 228112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,582 DEBUG chr4: Fitting background model for 40 segments 2025-01-31 09:48:23,611 DEBUG Processing 771/1013 atomic regions from SNP 231229 to 231829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,886 DEBUG Processing 760/1125 atomic regions from SNP 227812 to 228412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,892 DEBUG Processing 772/1013 atomic regions from SNP 231529 to 232129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,177 DEBUG Processing 773/1013 atomic regions from SNP 231829 to 232429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,191 DEBUG Processing 761/1125 atomic regions from SNP 228112 to 228712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,457 DEBUG Processing 774/1013 atomic regions from SNP 232129 to 232729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,509 DEBUG Processing 762/1125 atomic regions from SNP 228412 to 229012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,728 DEBUG Processing 775/1013 atomic regions from SNP 232429 to 233029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,819 DEBUG Subchromosome time: 293.08465265482664, subchromosome SNPs: 266078 2025-01-31 09:48:24,819 DEBUG Estimated BADs: [0.59, 4.74, 1.18, 7.11, 1.18, 4.74, 0.79, 2.37, 0.24, 2.37, 23.68, 2.37, 1.18, 21.32, 2.37, 0.47, 1.18, 4.74, 1.18, 7.11, 21.32, 4.74, 1.18, 21.32, 4.74, 9.47, 0.79, 7.11, 1.18, 7.11, 1.18, 4.74, 2.37, 11.84, 2.37, 0.59, 2.37, 0.30, 2.37, 0.26, 2.37, 0.24] SNP counts: [8857, 2976, 13966, 994, 14245, 1040, 2978, 20025, 8440, 4615, 825, 14074, 7581, 95, 10650, 7809, 7474, 1508, 6330, 6958, 5047, 1802, 3862, 4521, 6065, 17054, 8975, 3593, 6942, 4842, 4110, 11120, 5509, 1085, 5712, 7189, 5694, 7807, 5759, 3845, 1358, 2747] SNP IDs counts: [8857, 2976, 13966, 994, 14245, 1040, 2978, 20025, 8440, 4615, 825, 14074, 7581, 95, 10650, 7809, 7474, 1508, 6330, 6958, 5047, 1802, 3862, 4521, 6065, 17054, 8975, 3593, 6942, 4842, 4110, 11120, 5509, 1085, 5712, 7189, 5694, 7807, 5759, 3845, 1358, 2747] Critical gap: 698993bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.57Mbp, 10.23Mbp, 19.15Mbp, 19.70Mbp, 28.26Mbp, 28.82Mbp, 30.55Mbp, 42.16Mbp, 48.38Mbp, 51.15Mbp, 51.58Mbp, 59.42Mbp, 63.93Mbp, 63.98Mbp, 70.19Mbp, 75.04Mbp, 79.51Mbp, 80.37Mbp, 83.98Mbp, 87.72Mbp, 90.44Mbp, 91.58Mbp, 94.31Mbp, 96.82Mbp, 100.36Mbp, 109.60Mbp, 115.22Mbp, 117.21Mbp, 121.15Mbp, 123.70Mbp, 126.08Mbp, 132.21Mbp, 135.39Mbp, 135.98Mbp, 139.17Mbp, 143.80Mbp, 146.96Mbp, 151.77Mbp, 154.90Mbp, 157.27Mbp, 158.05Mbp, 160.04Mbp] 2025-01-31 09:48:24,819 DEBUG chr3 time: 293.0852932110429 s 2025-01-31 09:48:24,827 DEBUG Processing 763/1125 atomic regions from SNP 228712 to 229312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,832 DEBUG Subchromosome time: 285.82162691652775, subchromosome SNPs: 254704 2025-01-31 09:48:24,833 DEBUG Estimated BADs: [2.18, 0.55, 2.18, 6.54, 2.18, 8.72, 4.36, 0.55, 2.18, 0.55, 2.18, 0.27, 2.18, 0.31, 2.18, 0.27, 0.55, 4.36, 1.09, 2.18, 0.73, 2.18, 15.26, 4.36, 1.09, 4.36, 8.72, 4.36, 2.18, 8.72, 2.18, 8.72, 1.09, 6.54, 4.36] SNP counts: [4693, 22345, 4382, 4000, 7991, 1881, 14223, 7009, 4744, 9231, 5400, 14686, 9047, 5365, 11095, 9303, 8062, 959, 5232, 5836, 4419, 6660, 347, 8783, 1983, 6881, 3983, 5059, 3055, 9847, 8068, 697, 7365, 18086, 13987] SNP IDs counts: [4693, 22345, 4382, 4000, 7991, 1881, 14223, 7009, 4744, 9231, 5400, 14686, 9047, 5365, 11095, 9303, 8062, 959, 5232, 5836, 4419, 6660, 347, 8783, 1983, 6881, 3983, 5059, 3055, 9847, 8068, 697, 7365, 18086, 13987] Critical gap: 677034bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.77Mbp, 20.87Mbp, 23.38Mbp, 25.55Mbp, 30.19Mbp, 31.24Mbp, 38.93Mbp, 43.20Mbp, 45.88Mbp, 51.30Mbp, 54.21Mbp, 63.48Mbp, 68.43Mbp, 71.81Mbp, 77.86Mbp, 83.67Mbp, 88.54Mbp, 89.08Mbp, 92.07Mbp, 97.53Mbp, 99.98Mbp, 103.65Mbp, 103.83Mbp, 108.78Mbp, 110.09Mbp, 113.72Mbp, 115.82Mbp, 118.48Mbp, 120.09Mbp, 125.34Mbp, 129.72Mbp, 130.13Mbp, 134.14Mbp, 143.97Mbp, 151.83Mbp] 2025-01-31 09:48:24,833 DEBUG chr5 time: 285.8222364075482 s 2025-01-31 09:48:24,988 DEBUG chr5: Fitting background model for 35 segments 2025-01-31 09:48:24,989 DEBUG chr3: Fitting background model for 42 segments 2025-01-31 09:48:25,008 DEBUG Processing 776/1013 atomic regions from SNP 232729 to 233329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,138 DEBUG Processing 764/1125 atomic regions from SNP 229012 to 229612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,290 DEBUG Processing 777/1013 atomic regions from SNP 233029 to 233629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,459 DEBUG Processing 765/1125 atomic regions from SNP 229312 to 229912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,575 DEBUG Processing 778/1013 atomic regions from SNP 233329 to 233929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,757 DEBUG Processing 766/1125 atomic regions from SNP 229612 to 230212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,859 DEBUG Processing 779/1013 atomic regions from SNP 233629 to 234229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,080 DEBUG Processing 767/1125 atomic regions from SNP 229912 to 230512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,165 DEBUG Processing 780/1013 atomic regions from SNP 233929 to 234529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,386 DEBUG Processing 768/1125 atomic regions from SNP 230212 to 230812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,448 DEBUG Processing 781/1013 atomic regions from SNP 234229 to 234829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,693 DEBUG Processing 769/1125 atomic regions from SNP 230512 to 231112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,730 DEBUG Processing 782/1013 atomic regions from SNP 234529 to 235129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,998 DEBUG Processing 770/1125 atomic regions from SNP 230812 to 231412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,014 DEBUG Processing 783/1013 atomic regions from SNP 234829 to 235429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,367 DEBUG Processing 771/1125 atomic regions from SNP 231112 to 231712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,375 DEBUG Processing 784/1013 atomic regions from SNP 235129 to 235729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,786 DEBUG Processing 785/1013 atomic regions from SNP 235429 to 236029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,795 DEBUG Processing 772/1125 atomic regions from SNP 231412 to 232012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,200 DEBUG Processing 786/1013 atomic regions from SNP 235729 to 236329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,244 DEBUG Processing 773/1125 atomic regions from SNP 231712 to 232312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,612 DEBUG Processing 787/1013 atomic regions from SNP 236029 to 236629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,688 DEBUG Processing 774/1125 atomic regions from SNP 232012 to 232612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,894 DEBUG Processing 788/1013 atomic regions from SNP 236329 to 236929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,013 DEBUG Processing 775/1125 atomic regions from SNP 232312 to 232912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,172 DEBUG Processing 789/1013 atomic regions from SNP 236629 to 237229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,321 DEBUG Processing 776/1125 atomic regions from SNP 232612 to 233212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,448 DEBUG Processing 790/1013 atomic regions from SNP 236929 to 237529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,617 DEBUG Processing 777/1125 atomic regions from SNP 232912 to 233512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,734 DEBUG Processing 791/1013 atomic regions from SNP 237229 to 237829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,907 DEBUG Processing 778/1125 atomic regions from SNP 233212 to 233812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,009 DEBUG Processing 792/1013 atomic regions from SNP 237529 to 238129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,197 DEBUG Processing 779/1125 atomic regions from SNP 233512 to 234112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,286 DEBUG Processing 793/1013 atomic regions from SNP 237829 to 238429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,472 DEBUG Processing 780/1125 atomic regions from SNP 233812 to 234412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,568 DEBUG Processing 794/1013 atomic regions from SNP 238129 to 238729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,742 DEBUG Processing 781/1125 atomic regions from SNP 234112 to 234712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,851 DEBUG Processing 795/1013 atomic regions from SNP 238429 to 239029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,018 DEBUG Processing 782/1125 atomic regions from SNP 234412 to 235012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,139 DEBUG Processing 796/1013 atomic regions from SNP 238729 to 239329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,304 DEBUG Processing 783/1125 atomic regions from SNP 234712 to 235312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,428 DEBUG Processing 797/1013 atomic regions from SNP 239029 to 239629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,591 DEBUG Processing 784/1125 atomic regions from SNP 235012 to 235612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,714 DEBUG Processing 798/1013 atomic regions from SNP 239329 to 239929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,877 DEBUG Processing 785/1125 atomic regions from SNP 235312 to 235912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,988 DEBUG Processing 799/1013 atomic regions from SNP 239629 to 240229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,156 DEBUG Processing 786/1125 atomic regions from SNP 235612 to 236212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,255 DEBUG Processing 800/1013 atomic regions from SNP 239929 to 240529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,432 DEBUG Processing 787/1125 atomic regions from SNP 235912 to 236512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,519 DEBUG Processing 801/1013 atomic regions from SNP 240229 to 240829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,712 DEBUG Processing 788/1125 atomic regions from SNP 236212 to 236812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,786 DEBUG Processing 802/1013 atomic regions from SNP 240529 to 241129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,028 DEBUG Processing 789/1125 atomic regions from SNP 236512 to 237112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,053 DEBUG Processing 803/1013 atomic regions from SNP 240829 to 241429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,314 DEBUG Processing 790/1125 atomic regions from SNP 236812 to 237412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,322 DEBUG Processing 804/1013 atomic regions from SNP 241129 to 241729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,601 DEBUG Processing 805/1013 atomic regions from SNP 241429 to 242029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,610 DEBUG Processing 791/1125 atomic regions from SNP 237112 to 237712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,890 DEBUG Processing 806/1013 atomic regions from SNP 241729 to 242329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,905 DEBUG Processing 792/1125 atomic regions from SNP 237412 to 238012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,169 DEBUG Processing 807/1013 atomic regions from SNP 242029 to 242629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,190 DEBUG Processing 793/1125 atomic regions from SNP 237712 to 238312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,439 DEBUG Processing 808/1013 atomic regions from SNP 242329 to 242929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,467 DEBUG Processing 794/1125 atomic regions from SNP 238012 to 238612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,713 DEBUG Processing 809/1013 atomic regions from SNP 242629 to 243229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,750 DEBUG Processing 795/1125 atomic regions from SNP 238312 to 238912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,990 DEBUG Processing 810/1013 atomic regions from SNP 242929 to 243529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,035 DEBUG Processing 796/1125 atomic regions from SNP 238612 to 239212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,252 DEBUG Processing 811/1013 atomic regions from SNP 243229 to 243829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,315 DEBUG Processing 797/1125 atomic regions from SNP 238912 to 239512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,524 DEBUG Processing 812/1013 atomic regions from SNP 243529 to 244129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,600 DEBUG Processing 798/1125 atomic regions from SNP 239212 to 239812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,792 DEBUG Processing 813/1013 atomic regions from SNP 243829 to 244429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,875 DEBUG Processing 799/1125 atomic regions from SNP 239512 to 240112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,062 DEBUG Processing 814/1013 atomic regions from SNP 244129 to 244729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,158 DEBUG Processing 800/1125 atomic regions from SNP 239812 to 240412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,334 DEBUG Processing 815/1013 atomic regions from SNP 244429 to 245029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,448 DEBUG Processing 801/1125 atomic regions from SNP 240112 to 240712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,607 DEBUG Processing 816/1013 atomic regions from SNP 244729 to 245329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,741 DEBUG Processing 802/1125 atomic regions from SNP 240412 to 241012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,868 DEBUG Processing 817/1013 atomic regions from SNP 245029 to 245629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,051 DEBUG Processing 803/1125 atomic regions from SNP 240712 to 241312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,135 DEBUG Processing 818/1013 atomic regions from SNP 245329 to 245929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,287 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:48:37,391 DEBUG Processing 804/1125 atomic regions from SNP 241012 to 241612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,455 DEBUG Processing 819/1013 atomic regions from SNP 245629 to 246229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,680 DEBUG Processing 805/1125 atomic regions from SNP 241312 to 241912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,744 DEBUG Processing 820/1013 atomic regions from SNP 245929 to 246529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,969 DEBUG Processing 806/1125 atomic regions from SNP 241612 to 242212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,020 DEBUG Processing 821/1013 atomic regions from SNP 246229 to 246829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,253 DEBUG Processing 807/1125 atomic regions from SNP 241912 to 242512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,312 DEBUG Processing 822/1013 atomic regions from SNP 246529 to 247129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,576 DEBUG Processing 808/1125 atomic regions from SNP 242212 to 242812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,667 DEBUG Processing 823/1013 atomic regions from SNP 246829 to 247429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,917 DEBUG Processing 809/1125 atomic regions from SNP 242512 to 243112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,059 DEBUG Processing 824/1013 atomic regions from SNP 247129 to 247729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,252 DEBUG Processing 810/1125 atomic regions from SNP 242812 to 243412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,378 DEBUG Processing 825/1013 atomic regions from SNP 247429 to 248029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,558 DEBUG Processing 811/1125 atomic regions from SNP 243112 to 243712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,712 DEBUG Processing 826/1013 atomic regions from SNP 247729 to 248329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,899 DEBUG Processing 812/1125 atomic regions from SNP 243412 to 244012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,038 DEBUG Processing 827/1013 atomic regions from SNP 248029 to 248629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,252 DEBUG Processing 813/1125 atomic regions from SNP 243712 to 244312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,333 DEBUG Processing 828/1013 atomic regions from SNP 248329 to 248929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,660 DEBUG Processing 829/1013 atomic regions from SNP 248629 to 249229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,665 DEBUG Processing 814/1125 atomic regions from SNP 244012 to 244612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,957 DEBUG Processing 815/1125 atomic regions from SNP 244312 to 244912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,963 DEBUG Processing 830/1013 atomic regions from SNP 248929 to 249529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,247 DEBUG Processing 831/1013 atomic regions from SNP 249229 to 249829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,252 DEBUG Processing 816/1125 atomic regions from SNP 244612 to 245212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,527 DEBUG Processing 832/1013 atomic regions from SNP 249529 to 250129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,561 DEBUG Processing 817/1125 atomic regions from SNP 244912 to 245512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,806 DEBUG Processing 833/1013 atomic regions from SNP 249829 to 250429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,851 DEBUG Processing 818/1125 atomic regions from SNP 245212 to 245812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,084 DEBUG Processing 834/1013 atomic regions from SNP 250129 to 250729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,138 DEBUG Processing 819/1125 atomic regions from SNP 245512 to 246112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,372 DEBUG Processing 835/1013 atomic regions from SNP 250429 to 251029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,415 DEBUG Processing 820/1125 atomic regions from SNP 245812 to 246412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,654 DEBUG Processing 836/1013 atomic regions from SNP 250729 to 251329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,700 DEBUG Processing 821/1125 atomic regions from SNP 246112 to 246712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,936 DEBUG Processing 837/1013 atomic regions from SNP 251029 to 251629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,985 DEBUG Processing 822/1125 atomic regions from SNP 246412 to 247012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,218 DEBUG Processing 838/1013 atomic regions from SNP 251329 to 251929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,276 DEBUG Processing 823/1125 atomic regions from SNP 246712 to 247312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,496 DEBUG Processing 839/1013 atomic regions from SNP 251629 to 252229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,565 DEBUG Processing 824/1125 atomic regions from SNP 247012 to 247612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,774 DEBUG Processing 840/1013 atomic regions from SNP 251929 to 252529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,844 DEBUG Processing 825/1125 atomic regions from SNP 247312 to 247912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,050 DEBUG Processing 841/1013 atomic regions from SNP 252229 to 252829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,124 DEBUG Processing 826/1125 atomic regions from SNP 247612 to 248212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,332 DEBUG Processing 842/1013 atomic regions from SNP 252529 to 253129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,401 DEBUG Processing 827/1125 atomic regions from SNP 247912 to 248512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,610 DEBUG Processing 843/1013 atomic regions from SNP 252829 to 253429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,681 DEBUG Processing 828/1125 atomic regions from SNP 248212 to 248812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,882 DEBUG Processing 844/1013 atomic regions from SNP 253129 to 253729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,967 DEBUG Processing 829/1125 atomic regions from SNP 248512 to 249112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,160 DEBUG Processing 845/1013 atomic regions from SNP 253429 to 254029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,258 DEBUG Processing 830/1125 atomic regions from SNP 248812 to 249412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,438 DEBUG Processing 846/1013 atomic regions from SNP 253729 to 254329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,547 DEBUG Processing 831/1125 atomic regions from SNP 249112 to 249712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,718 DEBUG Processing 847/1013 atomic regions from SNP 254029 to 254629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,842 DEBUG Processing 832/1125 atomic regions from SNP 249412 to 250012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,992 DEBUG Processing 848/1013 atomic regions from SNP 254329 to 254929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,176 DEBUG Processing 833/1125 atomic regions from SNP 249712 to 250312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,263 DEBUG Processing 849/1013 atomic regions from SNP 254629 to 255229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,455 DEBUG Processing 834/1125 atomic regions from SNP 250012 to 250612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,538 DEBUG Processing 850/1013 atomic regions from SNP 254929 to 255529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,736 DEBUG Processing 835/1125 atomic regions from SNP 250312 to 250912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,807 DEBUG Processing 851/1013 atomic regions from SNP 255229 to 255829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,016 DEBUG Processing 836/1125 atomic regions from SNP 250612 to 251212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,080 DEBUG Processing 852/1013 atomic regions from SNP 255529 to 256129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,295 DEBUG Processing 837/1125 atomic regions from SNP 250912 to 251512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,356 DEBUG Processing 853/1013 atomic regions from SNP 255829 to 256429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,586 DEBUG Processing 838/1125 atomic regions from SNP 251212 to 251812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,645 DEBUG Processing 854/1013 atomic regions from SNP 256129 to 256729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,874 DEBUG Processing 839/1125 atomic regions from SNP 251512 to 252112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,939 DEBUG Processing 855/1013 atomic regions from SNP 256429 to 257029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,167 DEBUG Processing 840/1125 atomic regions from SNP 251812 to 252412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,233 DEBUG Processing 856/1013 atomic regions from SNP 256729 to 257329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,460 DEBUG Processing 841/1125 atomic regions from SNP 252112 to 252712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,524 DEBUG Processing 857/1013 atomic regions from SNP 257029 to 257629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,750 DEBUG Processing 842/1125 atomic regions from SNP 252412 to 253012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,812 DEBUG Processing 858/1013 atomic regions from SNP 257329 to 257929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,038 DEBUG Processing 843/1125 atomic regions from SNP 252712 to 253312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,091 DEBUG Processing 859/1013 atomic regions from SNP 257629 to 258229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,329 DEBUG Processing 844/1125 atomic regions from SNP 253012 to 253612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,363 DEBUG Processing 860/1013 atomic regions from SNP 257929 to 258529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,620 DEBUG Processing 845/1125 atomic regions from SNP 253312 to 253912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,632 DEBUG Processing 861/1013 atomic regions from SNP 258229 to 258829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,904 DEBUG Processing 862/1013 atomic regions from SNP 258529 to 259129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,906 DEBUG Processing 846/1125 atomic regions from SNP 253612 to 254212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,180 DEBUG Processing 863/1013 atomic regions from SNP 258829 to 259429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,192 DEBUG Processing 847/1125 atomic regions from SNP 253912 to 254512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,454 DEBUG Processing 864/1013 atomic regions from SNP 259129 to 259729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,481 DEBUG Processing 848/1125 atomic regions from SNP 254212 to 254812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,732 DEBUG Processing 865/1013 atomic regions from SNP 259429 to 260029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,782 DEBUG Processing 849/1125 atomic regions from SNP 254512 to 255112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,024 DEBUG Processing 866/1013 atomic regions from SNP 259729 to 260329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,084 DEBUG Processing 850/1125 atomic regions from SNP 254812 to 255412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,334 DEBUG Processing 867/1013 atomic regions from SNP 260029 to 260629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,382 DEBUG Processing 851/1125 atomic regions from SNP 255112 to 255712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,616 DEBUG Processing 868/1013 atomic regions from SNP 260329 to 260929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,686 DEBUG Processing 852/1125 atomic regions from SNP 255412 to 256012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,896 DEBUG Processing 869/1013 atomic regions from SNP 260629 to 261229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,001 DEBUG Processing 853/1125 atomic regions from SNP 255712 to 256312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,183 DEBUG Processing 870/1013 atomic regions from SNP 260929 to 261529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,296 DEBUG Processing 854/1125 atomic regions from SNP 256012 to 256612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,468 DEBUG Processing 871/1013 atomic regions from SNP 261229 to 261829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,590 DEBUG Processing 855/1125 atomic regions from SNP 256312 to 256912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,767 DEBUG Processing 872/1013 atomic regions from SNP 261529 to 262129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,887 DEBUG Processing 856/1125 atomic regions from SNP 256612 to 257212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,075 DEBUG Processing 873/1013 atomic regions from SNP 261829 to 262429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,206 DEBUG Processing 857/1125 atomic regions from SNP 256912 to 257512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,383 DEBUG Processing 874/1013 atomic regions from SNP 262129 to 262729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,527 DEBUG Processing 858/1125 atomic regions from SNP 257212 to 257812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,674 DEBUG Processing 875/1013 atomic regions from SNP 262429 to 263029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,846 DEBUG Processing 859/1125 atomic regions from SNP 257512 to 258112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,984 DEBUG Processing 876/1013 atomic regions from SNP 262729 to 263329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,148 DEBUG Processing 860/1125 atomic regions from SNP 257812 to 258412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,280 DEBUG Processing 877/1013 atomic regions from SNP 263029 to 263629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,463 DEBUG Processing 861/1125 atomic regions from SNP 258112 to 258712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,566 DEBUG Processing 878/1013 atomic regions from SNP 263329 to 263929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,779 DEBUG Processing 862/1125 atomic regions from SNP 258412 to 259012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,876 DEBUG Processing 879/1013 atomic regions from SNP 263629 to 264229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,089 DEBUG Processing 863/1125 atomic regions from SNP 258712 to 259312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,182 DEBUG Processing 880/1013 atomic regions from SNP 263929 to 264529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,382 DEBUG Processing 864/1125 atomic regions from SNP 259012 to 259612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,486 DEBUG Processing 881/1013 atomic regions from SNP 264229 to 264829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,686 DEBUG Processing 865/1125 atomic regions from SNP 259312 to 259912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,802 DEBUG Processing 882/1013 atomic regions from SNP 264529 to 265129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,998 DEBUG Processing 866/1125 atomic regions from SNP 259612 to 260212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,085 DEBUG Processing 883/1013 atomic regions from SNP 264829 to 265429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,303 DEBUG Processing 867/1125 atomic regions from SNP 259912 to 260512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,356 DEBUG Processing 884/1013 atomic regions from SNP 265129 to 265729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,625 DEBUG Processing 868/1125 atomic regions from SNP 260212 to 260812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,628 DEBUG Processing 885/1013 atomic regions from SNP 265429 to 266029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,918 DEBUG Processing 886/1013 atomic regions from SNP 265729 to 266329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,949 DEBUG Processing 869/1125 atomic regions from SNP 260512 to 261112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,227 DEBUG Processing 887/1013 atomic regions from SNP 266029 to 266629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,246 DEBUG Processing 870/1125 atomic regions from SNP 260812 to 261412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,540 DEBUG Processing 888/1013 atomic regions from SNP 266329 to 266929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,545 DEBUG Processing 871/1125 atomic regions from SNP 261112 to 261712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,860 DEBUG Processing 889/1013 atomic regions from SNP 266629 to 267229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,871 DEBUG Processing 872/1125 atomic regions from SNP 261412 to 262012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,980 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:48:57,982 DEBUG chr6: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.010 2025-01-31 09:48:58,151 DEBUG Processing 890/1013 atomic regions from SNP 266929 to 267529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,159 DEBUG Processing 873/1125 atomic regions from SNP 261712 to 262312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,447 DEBUG Processing 891/1013 atomic regions from SNP 267229 to 267829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,456 DEBUG Processing 874/1125 atomic regions from SNP 262012 to 262612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,748 DEBUG Processing 892/1013 atomic regions from SNP 267529 to 268129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,771 DEBUG Processing 875/1125 atomic regions from SNP 262312 to 262912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,043 DEBUG Processing 893/1013 atomic regions from SNP 267829 to 268429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,065 DEBUG Processing 876/1125 atomic regions from SNP 262612 to 263212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,351 DEBUG Processing 894/1013 atomic regions from SNP 268129 to 268729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,358 DEBUG Processing 877/1125 atomic regions from SNP 262912 to 263512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,683 DEBUG Processing 878/1125 atomic regions from SNP 263212 to 263812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,684 DEBUG Processing 895/1013 atomic regions from SNP 268429 to 269029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,975 DEBUG Processing 879/1125 atomic regions from SNP 263512 to 264112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,996 DEBUG Processing 896/1013 atomic regions from SNP 268729 to 269329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,267 DEBUG Processing 880/1125 atomic regions from SNP 263812 to 264412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,304 DEBUG Processing 897/1013 atomic regions from SNP 269029 to 269629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,587 DEBUG Processing 881/1125 atomic regions from SNP 264112 to 264712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,620 DEBUG Processing 898/1013 atomic regions from SNP 269329 to 269929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,955 DEBUG Processing 882/1125 atomic regions from SNP 264412 to 265012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,981 DEBUG Processing 899/1013 atomic regions from SNP 269629 to 270229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,987 DEBUG chr6 total SNP count: 254139 2025-01-31 09:49:00,987 DEBUG chr6 length: 149736546 2025-01-31 09:49:00,987 DEBUG ----------------------------------------- 2025-01-31 09:49:00,987 INFO Processing SNPs in chr6 2025-01-31 09:49:01,249 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 254139)] 2025-01-31 09:49:01,276 DEBUG Processing 883/1125 atomic regions from SNP 264712 to 265312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,281 DEBUG Processing 900/1013 atomic regions from SNP 269929 to 270529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,428 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:01,615 DEBUG Processing 884/1125 atomic regions from SNP 265012 to 265612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,618 DEBUG Processing 901/1013 atomic regions from SNP 270229 to 270829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,931 DEBUG Processing 885/1125 atomic regions from SNP 265312 to 265912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,932 DEBUG Processing 902/1013 atomic regions from SNP 270529 to 271129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,230 DEBUG Processing 903/1013 atomic regions from SNP 270829 to 271429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,250 DEBUG Processing 886/1125 atomic regions from SNP 265612 to 266212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,519 DEBUG Processing 904/1013 atomic regions from SNP 271129 to 271729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,566 DEBUG Processing 887/1125 atomic regions from SNP 265912 to 266512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,827 DEBUG Processing 905/1013 atomic regions from SNP 271429 to 272029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,887 DEBUG Processing 888/1125 atomic regions from SNP 266212 to 266812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,148 DEBUG Processing 906/1013 atomic regions from SNP 271729 to 272329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,211 DEBUG Processing 889/1125 atomic regions from SNP 266512 to 267112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,458 DEBUG Processing 907/1013 atomic regions from SNP 272029 to 272629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,526 DEBUG Processing 890/1125 atomic regions from SNP 266812 to 267412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,764 DEBUG Processing 908/1013 atomic regions from SNP 272329 to 272929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,848 DEBUG Processing 891/1125 atomic regions from SNP 267112 to 267712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,063 DEBUG Processing 909/1013 atomic regions from SNP 272629 to 273229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,184 DEBUG Processing 892/1125 atomic regions from SNP 267412 to 268012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,367 DEBUG Processing 910/1013 atomic regions from SNP 272929 to 273529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,504 DEBUG Processing 893/1125 atomic regions from SNP 267712 to 268312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,671 DEBUG Processing 911/1013 atomic regions from SNP 273229 to 273829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,829 DEBUG Processing 894/1125 atomic regions from SNP 268012 to 268612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,973 DEBUG Processing 912/1013 atomic regions from SNP 273529 to 274129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,137 DEBUG Processing 895/1125 atomic regions from SNP 268312 to 268912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,282 DEBUG Processing 913/1013 atomic regions from SNP 273829 to 274429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,439 DEBUG Processing 896/1125 atomic regions from SNP 268612 to 269212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,574 DEBUG Processing 914/1013 atomic regions from SNP 274129 to 274729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,747 DEBUG Processing 897/1125 atomic regions from SNP 268912 to 269512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,853 DEBUG Processing 915/1013 atomic regions from SNP 274429 to 275029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,072 DEBUG Processing 898/1125 atomic regions from SNP 269212 to 269812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,133 DEBUG Processing 916/1013 atomic regions from SNP 274729 to 275329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,362 DEBUG Processing 899/1125 atomic regions from SNP 269512 to 270112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,408 DEBUG Processing 917/1013 atomic regions from SNP 275029 to 275629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,643 DEBUG Processing 900/1125 atomic regions from SNP 269812 to 270412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,687 DEBUG Processing 918/1013 atomic regions from SNP 275329 to 275929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,927 DEBUG Processing 901/1125 atomic regions from SNP 270112 to 270712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,967 DEBUG Processing 919/1013 atomic regions from SNP 275629 to 276229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,218 DEBUG Processing 902/1125 atomic regions from SNP 270412 to 271012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,250 DEBUG Processing 920/1013 atomic regions from SNP 275929 to 276529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,511 DEBUG Processing 903/1125 atomic regions from SNP 270712 to 271312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,529 DEBUG Processing 921/1013 atomic regions from SNP 276229 to 276829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,810 DEBUG Processing 904/1125 atomic regions from SNP 271012 to 271612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,814 DEBUG Processing 922/1013 atomic regions from SNP 276529 to 277129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,106 DEBUG Processing 905/1125 atomic regions from SNP 271312 to 271912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,112 DEBUG Processing 923/1013 atomic regions from SNP 276829 to 277429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,394 DEBUG Processing 924/1013 atomic regions from SNP 277129 to 277729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,396 DEBUG Processing 906/1125 atomic regions from SNP 271612 to 272212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,704 DEBUG Processing 925/1013 atomic regions from SNP 277429 to 278029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,707 DEBUG Processing 907/1125 atomic regions from SNP 271912 to 272512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,004 DEBUG Processing 926/1013 atomic regions from SNP 277729 to 278329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,013 DEBUG Processing 908/1125 atomic regions from SNP 272212 to 272812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,307 DEBUG Processing 909/1125 atomic regions from SNP 272512 to 273112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,315 DEBUG Processing 927/1013 atomic regions from SNP 278029 to 278629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,593 DEBUG Processing 928/1013 atomic regions from SNP 278329 to 278929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,598 DEBUG Processing 910/1125 atomic regions from SNP 272812 to 273412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,873 DEBUG Processing 929/1013 atomic regions from SNP 278629 to 279229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,885 DEBUG Processing 911/1125 atomic regions from SNP 273112 to 273712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,158 DEBUG Processing 930/1013 atomic regions from SNP 278929 to 279529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,193 DEBUG Processing 912/1125 atomic regions from SNP 273412 to 274012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,451 DEBUG Processing 931/1013 atomic regions from SNP 279229 to 279829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,515 DEBUG Processing 913/1125 atomic regions from SNP 273712 to 274312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,742 DEBUG Processing 932/1013 atomic regions from SNP 279529 to 280129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,831 DEBUG Processing 914/1125 atomic regions from SNP 274012 to 274612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,024 DEBUG Processing 933/1013 atomic regions from SNP 279829 to 280429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,126 DEBUG Processing 915/1125 atomic regions from SNP 274312 to 274912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,313 DEBUG Processing 934/1013 atomic regions from SNP 280129 to 280729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,418 DEBUG Processing 916/1125 atomic regions from SNP 274612 to 275212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,604 DEBUG Processing 935/1013 atomic regions from SNP 280429 to 281029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,736 DEBUG Processing 917/1125 atomic regions from SNP 274912 to 275512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,893 DEBUG Processing 936/1013 atomic regions from SNP 280729 to 281329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,047 DEBUG Processing 918/1125 atomic regions from SNP 275212 to 275812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,170 DEBUG Processing 937/1013 atomic regions from SNP 281029 to 281629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,369 DEBUG Processing 919/1125 atomic regions from SNP 275512 to 276112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,446 DEBUG Processing 938/1013 atomic regions from SNP 281329 to 281929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,690 DEBUG Processing 920/1125 atomic regions from SNP 275812 to 276412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,719 DEBUG Processing 939/1013 atomic regions from SNP 281629 to 282229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,981 DEBUG Processing 921/1125 atomic regions from SNP 276112 to 276712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,011 DEBUG Processing 940/1013 atomic regions from SNP 281929 to 282529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,275 DEBUG Processing 922/1125 atomic regions from SNP 276412 to 277012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,306 DEBUG Processing 941/1013 atomic regions from SNP 282229 to 282829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,579 DEBUG Processing 923/1125 atomic regions from SNP 276712 to 277312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,615 DEBUG Processing 942/1013 atomic regions from SNP 282529 to 283129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,910 DEBUG Processing 924/1125 atomic regions from SNP 277012 to 277612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,919 DEBUG Processing 943/1013 atomic regions from SNP 282829 to 283429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,223 DEBUG Processing 925/1125 atomic regions from SNP 277312 to 277912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,232 DEBUG Processing 944/1013 atomic regions from SNP 283129 to 283729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,518 DEBUG Processing 926/1125 atomic regions from SNP 277612 to 278212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,531 DEBUG Processing 945/1013 atomic regions from SNP 283429 to 284029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,816 DEBUG Processing 927/1125 atomic regions from SNP 277912 to 278512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,835 DEBUG Processing 946/1013 atomic regions from SNP 283729 to 284329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,127 DEBUG Processing 947/1013 atomic regions from SNP 284029 to 284629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,139 DEBUG Processing 928/1125 atomic regions from SNP 278212 to 278812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,418 DEBUG Processing 948/1013 atomic regions from SNP 284329 to 284929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,449 DEBUG Processing 929/1125 atomic regions from SNP 278512 to 279112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,731 DEBUG Processing 949/1013 atomic regions from SNP 284629 to 285229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,748 DEBUG Processing 930/1125 atomic regions from SNP 278812 to 279412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,053 DEBUG Processing 931/1125 atomic regions from SNP 279112 to 279712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,053 DEBUG Processing 950/1013 atomic regions from SNP 284929 to 285529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,352 DEBUG Processing 932/1125 atomic regions from SNP 279412 to 280012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,377 DEBUG Processing 951/1013 atomic regions from SNP 285229 to 285829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,647 DEBUG Processing 933/1125 atomic regions from SNP 279712 to 280312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,683 DEBUG Processing 952/1013 atomic regions from SNP 285529 to 286129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,938 DEBUG Processing 934/1125 atomic regions from SNP 280012 to 280612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,981 DEBUG Processing 953/1013 atomic regions from SNP 285829 to 286429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,245 DEBUG Processing 935/1125 atomic regions from SNP 280312 to 280912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,294 DEBUG Processing 954/1013 atomic regions from SNP 286129 to 286729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,543 DEBUG Processing 936/1125 atomic regions from SNP 280612 to 281212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,614 DEBUG Processing 955/1013 atomic regions from SNP 286429 to 287029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,843 DEBUG Processing 937/1125 atomic regions from SNP 280912 to 281512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,917 DEBUG Processing 956/1013 atomic regions from SNP 286729 to 287329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,167 DEBUG Processing 938/1125 atomic regions from SNP 281212 to 281812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,233 DEBUG Processing 957/1013 atomic regions from SNP 287029 to 287629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,482 DEBUG Processing 939/1125 atomic regions from SNP 281512 to 282112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,556 DEBUG Processing 958/1013 atomic regions from SNP 287329 to 287929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,779 DEBUG Processing 940/1125 atomic regions from SNP 281812 to 282412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,877 DEBUG Processing 959/1013 atomic regions from SNP 287629 to 288229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,066 DEBUG Processing 941/1125 atomic regions from SNP 282112 to 282712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,185 DEBUG Processing 960/1013 atomic regions from SNP 287929 to 288529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,358 DEBUG Processing 942/1125 atomic regions from SNP 282412 to 283012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,495 DEBUG Processing 961/1013 atomic regions from SNP 288229 to 288829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,683 DEBUG Processing 943/1125 atomic regions from SNP 282712 to 283312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,813 DEBUG Processing 962/1013 atomic regions from SNP 288529 to 289129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,009 DEBUG Processing 944/1125 atomic regions from SNP 283012 to 283612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,126 DEBUG Processing 963/1013 atomic regions from SNP 288829 to 289429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,337 DEBUG Processing 945/1125 atomic regions from SNP 283312 to 283912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,444 DEBUG Processing 964/1013 atomic regions from SNP 289129 to 289729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,663 DEBUG Processing 946/1125 atomic regions from SNP 283612 to 284212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,768 DEBUG Processing 965/1013 atomic regions from SNP 289429 to 290029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,999 DEBUG Processing 947/1125 atomic regions from SNP 283912 to 284512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,091 DEBUG Processing 966/1013 atomic regions from SNP 289729 to 290329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,334 DEBUG Processing 948/1125 atomic regions from SNP 284212 to 284812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,416 DEBUG Processing 967/1013 atomic regions from SNP 290029 to 290629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,677 DEBUG Processing 949/1125 atomic regions from SNP 284512 to 285112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,742 DEBUG Processing 968/1013 atomic regions from SNP 290329 to 290929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:21,995 DEBUG Processing 950/1125 atomic regions from SNP 284812 to 285412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,060 DEBUG Processing 969/1013 atomic regions from SNP 290629 to 291229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,289 DEBUG Processing 951/1125 atomic regions from SNP 285112 to 285712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,377 DEBUG Processing 970/1013 atomic regions from SNP 290929 to 291529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,575 DEBUG Processing 952/1125 atomic regions from SNP 285412 to 286012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,699 DEBUG Processing 971/1013 atomic regions from SNP 291229 to 291829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:22,860 DEBUG Processing 953/1125 atomic regions from SNP 285712 to 286312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,023 DEBUG Processing 972/1013 atomic regions from SNP 291529 to 292129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,166 DEBUG Processing 954/1125 atomic regions from SNP 286012 to 286612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,329 DEBUG Processing 973/1013 atomic regions from SNP 291829 to 292429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,463 DEBUG Processing 955/1125 atomic regions from SNP 286312 to 286912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,606 DEBUG Processing 974/1013 atomic regions from SNP 292129 to 292729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:23,794 DEBUG Processing 956/1125 atomic regions from SNP 286612 to 287212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,881 DEBUG Processing 975/1013 atomic regions from SNP 292429 to 293029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,125 DEBUG Processing 957/1125 atomic regions from SNP 286912 to 287512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,155 DEBUG Processing 976/1013 atomic regions from SNP 292729 to 293329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,421 DEBUG Processing 958/1125 atomic regions from SNP 287212 to 287812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,434 DEBUG Processing 977/1013 atomic regions from SNP 293029 to 293629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,718 DEBUG Processing 978/1013 atomic regions from SNP 293329 to 293929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:24,731 DEBUG Processing 959/1125 atomic regions from SNP 287512 to 288112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,992 DEBUG Processing 979/1013 atomic regions from SNP 293629 to 294229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,040 DEBUG Processing 960/1125 atomic regions from SNP 287812 to 288412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,271 DEBUG Processing 980/1013 atomic regions from SNP 293929 to 294529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,339 DEBUG Processing 961/1125 atomic regions from SNP 288112 to 288712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,556 DEBUG Processing 981/1013 atomic regions from SNP 294229 to 294829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,647 DEBUG Processing 962/1125 atomic regions from SNP 288412 to 289012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,838 DEBUG Processing 982/1013 atomic regions from SNP 294529 to 295129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:25,955 DEBUG Processing 963/1125 atomic regions from SNP 288712 to 289312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,121 DEBUG Processing 983/1013 atomic regions from SNP 294829 to 295429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,249 DEBUG Processing 964/1125 atomic regions from SNP 289012 to 289612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,422 DEBUG Processing 984/1013 atomic regions from SNP 295129 to 295729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,540 DEBUG Processing 965/1125 atomic regions from SNP 289312 to 289912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,747 DEBUG Processing 985/1013 atomic regions from SNP 295429 to 296029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:26,835 DEBUG Processing 966/1125 atomic regions from SNP 289612 to 290212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,036 DEBUG Processing 986/1013 atomic regions from SNP 295729 to 296329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,131 DEBUG Processing 967/1125 atomic regions from SNP 289912 to 290512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,312 DEBUG Processing 987/1013 atomic regions from SNP 296029 to 296629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,428 DEBUG Processing 968/1125 atomic regions from SNP 290212 to 290812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,591 DEBUG Processing 988/1013 atomic regions from SNP 296329 to 296929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:27,724 DEBUG Processing 969/1125 atomic regions from SNP 290512 to 291112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,872 DEBUG Processing 989/1013 atomic regions from SNP 296629 to 297229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,021 DEBUG Processing 970/1125 atomic regions from SNP 290812 to 291412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,165 DEBUG Processing 990/1013 atomic regions from SNP 296929 to 297529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,319 DEBUG Processing 971/1125 atomic regions from SNP 291112 to 291712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,445 DEBUG Processing 991/1013 atomic regions from SNP 297229 to 297829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,623 DEBUG Processing 972/1125 atomic regions from SNP 291412 to 292012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,733 DEBUG Processing 992/1013 atomic regions from SNP 297529 to 298129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:28,930 DEBUG Processing 973/1125 atomic regions from SNP 291712 to 292312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,028 DEBUG Processing 993/1013 atomic regions from SNP 297829 to 298429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,264 DEBUG Processing 974/1125 atomic regions from SNP 292012 to 292612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,332 DEBUG Processing 994/1013 atomic regions from SNP 298129 to 298729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,606 DEBUG Processing 975/1125 atomic regions from SNP 292312 to 292912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,667 DEBUG Processing 995/1013 atomic regions from SNP 298429 to 299029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:29,911 DEBUG Processing 976/1125 atomic regions from SNP 292612 to 293212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,955 DEBUG Processing 996/1013 atomic regions from SNP 298729 to 299329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,230 DEBUG Processing 977/1125 atomic regions from SNP 292912 to 293512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,244 DEBUG Processing 997/1013 atomic regions from SNP 299029 to 299629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,563 DEBUG Processing 978/1125 atomic regions from SNP 293212 to 293812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,570 DEBUG Processing 998/1013 atomic regions from SNP 299329 to 299929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,873 DEBUG Processing 999/1013 atomic regions from SNP 299629 to 300229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:30,910 DEBUG Processing 979/1125 atomic regions from SNP 293512 to 294112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,211 DEBUG Processing 1000/1013 atomic regions from SNP 299929 to 300529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,306 DEBUG Processing 980/1125 atomic regions from SNP 293812 to 294412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,494 DEBUG Processing 1001/1013 atomic regions from SNP 300229 to 300829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:31,667 DEBUG Processing 981/1125 atomic regions from SNP 294112 to 294712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,886 DEBUG Processing 1002/1013 atomic regions from SNP 300529 to 301129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,069 DEBUG Processing 982/1125 atomic regions from SNP 294412 to 295012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,219 DEBUG Processing 1003/1013 atomic regions from SNP 300829 to 301429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,380 DEBUG Processing 983/1125 atomic regions from SNP 294712 to 295312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,506 DEBUG Processing 1004/1013 atomic regions from SNP 301129 to 301729 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,598 DEBUG Segmenting atomic regions: 2025-01-31 09:49:32,686 DEBUG Processing 984/1125 atomic regions from SNP 295012 to 295612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,713 DEBUG Processing 1/846 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,794 DEBUG Processing 1005/1013 atomic regions from SNP 301429 to 302029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:32,970 DEBUG Processing 2/846 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,012 DEBUG Processing 985/1125 atomic regions from SNP 295312 to 295912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,085 DEBUG Processing 1006/1013 atomic regions from SNP 301729 to 302329 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,232 DEBUG Processing 3/846 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,346 DEBUG Processing 986/1125 atomic regions from SNP 295612 to 296212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,384 DEBUG Processing 1007/1013 atomic regions from SNP 302029 to 302629 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,485 DEBUG Processing 4/846 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,677 DEBUG Processing 1008/1013 atomic regions from SNP 302329 to 302929 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:33,686 DEBUG Processing 987/1125 atomic regions from SNP 295912 to 296512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,745 DEBUG Processing 5/846 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,975 DEBUG Processing 1009/1013 atomic regions from SNP 302629 to 303229 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,004 DEBUG Processing 6/846 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,009 DEBUG Processing 988/1125 atomic regions from SNP 296212 to 296812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,265 DEBUG Processing 7/846 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,295 DEBUG Processing 1010/1013 atomic regions from SNP 302929 to 303529 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,314 DEBUG Processing 989/1125 atomic regions from SNP 296512 to 297112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,515 DEBUG Processing 8/846 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,613 DEBUG Processing 990/1125 atomic regions from SNP 296812 to 297412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,619 DEBUG Processing 1011/1013 atomic regions from SNP 303229 to 303829 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:34,775 DEBUG Processing 9/846 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,914 DEBUG Processing 991/1125 atomic regions from SNP 297112 to 297712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,929 DEBUG Processing 1012/1013 atomic regions from SNP 303529 to 304129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,056 DEBUG Processing 10/846 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,210 DEBUG Processing 1013/1013 atomic regions from SNP 303829 to 304429 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:35,217 DEBUG Processing 992/1125 atomic regions from SNP 297412 to 298012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,305 DEBUG Processing 11/846 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,360 DEBUG Unique SNPs positions in subchromosome 1: 304430 2025-01-31 09:49:35,521 DEBUG Processing 993/1125 atomic regions from SNP 297712 to 298312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,570 DEBUG Processing 12/846 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,826 DEBUG Processing 994/1125 atomic regions from SNP 298012 to 298612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,839 DEBUG Processing 13/846 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,109 DEBUG Processing 14/846 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,129 DEBUG Processing 995/1125 atomic regions from SNP 298312 to 298912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,352 DEBUG Processing 15/846 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,430 DEBUG Processing 996/1125 atomic regions from SNP 298612 to 299212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,593 DEBUG Processing 16/846 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,733 DEBUG Processing 997/1125 atomic regions from SNP 298912 to 299512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,832 DEBUG Processing 17/846 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,034 DEBUG Processing 998/1125 atomic regions from SNP 299212 to 299812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,081 DEBUG Processing 18/846 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,338 DEBUG Processing 19/846 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,348 DEBUG Processing 999/1125 atomic regions from SNP 299512 to 300112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,588 DEBUG Processing 20/846 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,653 DEBUG Processing 1000/1125 atomic regions from SNP 299812 to 300412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,832 DEBUG Processing 21/846 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,961 DEBUG Processing 1001/1125 atomic regions from SNP 300112 to 300712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,077 DEBUG Processing 22/846 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,266 DEBUG Processing 1002/1125 atomic regions from SNP 300412 to 301012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,337 DEBUG Processing 23/846 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,574 DEBUG Processing 1003/1125 atomic regions from SNP 300712 to 301312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,589 DEBUG Processing 24/846 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,843 DEBUG Processing 25/846 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,885 DEBUG Processing 1004/1125 atomic regions from SNP 301012 to 301612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,096 DEBUG Processing 26/846 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,196 DEBUG Processing 1005/1125 atomic regions from SNP 301312 to 301912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,365 DEBUG Processing 27/846 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,505 DEBUG Processing 1006/1125 atomic regions from SNP 301612 to 302212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,635 DEBUG Processing 28/846 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,844 DEBUG Processing 1007/1125 atomic regions from SNP 301912 to 302512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,903 DEBUG Processing 29/846 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,149 DEBUG Processing 1008/1125 atomic regions from SNP 302212 to 302812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,161 DEBUG Processing 30/846 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,430 DEBUG Processing 31/846 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,461 DEBUG Processing 1009/1125 atomic regions from SNP 302512 to 303112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,712 DEBUG Processing 32/846 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,770 DEBUG Processing 1010/1125 atomic regions from SNP 302812 to 303412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,983 DEBUG Processing 33/846 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,086 DEBUG Processing 1011/1125 atomic regions from SNP 303112 to 303712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,314 DEBUG Processing 34/846 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,520 DEBUG Processing 1012/1125 atomic regions from SNP 303412 to 304012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,674 DEBUG Processing 35/846 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,904 DEBUG Processing 1013/1125 atomic regions from SNP 303712 to 304312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,935 DEBUG Processing 36/846 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,222 DEBUG Processing 37/846 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,267 DEBUG Processing 1014/1125 atomic regions from SNP 304012 to 304612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,486 DEBUG Processing 38/846 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,623 DEBUG Processing 1015/1125 atomic regions from SNP 304312 to 304912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,772 DEBUG Processing 39/846 atomic regions from SNP 11438 to 12038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,963 DEBUG Processing 1016/1125 atomic regions from SNP 304612 to 305212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,025 DEBUG Processing 40/846 atomic regions from SNP 11738 to 12338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,272 DEBUG Processing 1017/1125 atomic regions from SNP 304912 to 305512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,297 DEBUG Processing 41/846 atomic regions from SNP 12038 to 12638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,610 DEBUG Processing 42/846 atomic regions from SNP 12338 to 12938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,651 DEBUG Processing 1018/1125 atomic regions from SNP 305212 to 305812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,871 DEBUG Processing 43/846 atomic regions from SNP 12638 to 13238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,972 DEBUG Processing 1019/1125 atomic regions from SNP 305512 to 306112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,151 DEBUG Processing 44/846 atomic regions from SNP 12938 to 13538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,279 DEBUG Processing 1020/1125 atomic regions from SNP 305812 to 306412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,406 DEBUG Processing 45/846 atomic regions from SNP 13238 to 13838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,596 DEBUG Processing 1021/1125 atomic regions from SNP 306112 to 306712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,662 DEBUG Processing 46/846 atomic regions from SNP 13538 to 14138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,911 DEBUG Processing 47/846 atomic regions from SNP 13838 to 14438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,929 DEBUG Processing 1022/1125 atomic regions from SNP 306412 to 307012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,153 DEBUG Processing 48/846 atomic regions from SNP 14138 to 14738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,258 DEBUG Processing 1023/1125 atomic regions from SNP 306712 to 307312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,397 DEBUG Processing 49/846 atomic regions from SNP 14438 to 15038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,567 DEBUG Processing 1024/1125 atomic regions from SNP 307012 to 307612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,635 DEBUG Processing 50/846 atomic regions from SNP 14738 to 15338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,872 DEBUG Processing 1025/1125 atomic regions from SNP 307312 to 307912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,877 DEBUG Processing 51/846 atomic regions from SNP 15038 to 15638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,120 DEBUG Processing 52/846 atomic regions from SNP 15338 to 15938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,181 DEBUG Processing 1026/1125 atomic regions from SNP 307612 to 308212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,363 DEBUG Processing 53/846 atomic regions from SNP 15638 to 16238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,496 DEBUG Processing 1027/1125 atomic regions from SNP 307912 to 308512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,610 DEBUG Processing 54/846 atomic regions from SNP 15938 to 16538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,802 DEBUG Processing 1028/1125 atomic regions from SNP 308212 to 308812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,860 DEBUG Processing 55/846 atomic regions from SNP 16238 to 16838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,110 DEBUG Processing 56/846 atomic regions from SNP 16538 to 17138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,125 DEBUG Processing 1029/1125 atomic regions from SNP 308512 to 309112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,358 DEBUG Processing 57/846 atomic regions from SNP 16838 to 17438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,460 DEBUG Processing 1030/1125 atomic regions from SNP 308812 to 309412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,612 DEBUG Processing 58/846 atomic regions from SNP 17138 to 17738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,802 DEBUG Processing 1031/1125 atomic regions from SNP 309112 to 309712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,863 DEBUG Processing 59/846 atomic regions from SNP 17438 to 18038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,118 DEBUG Processing 60/846 atomic regions from SNP 17738 to 18338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,135 DEBUG Processing 1032/1125 atomic regions from SNP 309412 to 310012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,389 DEBUG Processing 61/846 atomic regions from SNP 18038 to 18638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,450 DEBUG Processing 1033/1125 atomic regions from SNP 309712 to 310312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,644 DEBUG Processing 62/846 atomic regions from SNP 18338 to 18938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,782 DEBUG Processing 1034/1125 atomic regions from SNP 310012 to 310612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,896 DEBUG Processing 63/846 atomic regions from SNP 18638 to 19238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,117 DEBUG Processing 1035/1125 atomic regions from SNP 310312 to 310912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,166 DEBUG Processing 64/846 atomic regions from SNP 18938 to 19538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,422 DEBUG Processing 65/846 atomic regions from SNP 19238 to 19838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,447 DEBUG Processing 1036/1125 atomic regions from SNP 310612 to 311212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,682 DEBUG Processing 66/846 atomic regions from SNP 19538 to 20138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,782 DEBUG Processing 1037/1125 atomic regions from SNP 310912 to 311512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,939 DEBUG Processing 67/846 atomic regions from SNP 19838 to 20438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,121 DEBUG Processing 1038/1125 atomic regions from SNP 311212 to 311812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,199 DEBUG Processing 68/846 atomic regions from SNP 20138 to 20738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,452 DEBUG Processing 69/846 atomic regions from SNP 20438 to 21038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,459 DEBUG Processing 1039/1125 atomic regions from SNP 311512 to 312112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,714 DEBUG Processing 70/846 atomic regions from SNP 20738 to 21338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,798 DEBUG Processing 1040/1125 atomic regions from SNP 311812 to 312412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,969 DEBUG Processing 71/846 atomic regions from SNP 21038 to 21638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,134 DEBUG Processing 1041/1125 atomic regions from SNP 312112 to 312712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,222 DEBUG Processing 72/846 atomic regions from SNP 21338 to 21938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,451 DEBUG Processing 1042/1125 atomic regions from SNP 312412 to 313012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,475 DEBUG Processing 73/846 atomic regions from SNP 21638 to 22238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,735 DEBUG Processing 74/846 atomic regions from SNP 21938 to 22538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,747 DEBUG Processing 1043/1125 atomic regions from SNP 312712 to 313312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,989 DEBUG Processing 75/846 atomic regions from SNP 22238 to 22838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,062 DEBUG Processing 1044/1125 atomic regions from SNP 313012 to 313612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,243 DEBUG Processing 76/846 atomic regions from SNP 22538 to 23138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,376 DEBUG Processing 1045/1125 atomic regions from SNP 313312 to 313912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,495 DEBUG Processing 77/846 atomic regions from SNP 22838 to 23438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,709 DEBUG Processing 1046/1125 atomic regions from SNP 313612 to 314212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,749 DEBUG Processing 78/846 atomic regions from SNP 23138 to 23738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,006 DEBUG Processing 79/846 atomic regions from SNP 23438 to 24038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,040 DEBUG Processing 1047/1125 atomic regions from SNP 313912 to 314512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,267 DEBUG Processing 80/846 atomic regions from SNP 23738 to 24338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,369 DEBUG Processing 1048/1125 atomic regions from SNP 314212 to 314812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,526 DEBUG Processing 81/846 atomic regions from SNP 24038 to 24638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,671 DEBUG Processing 1049/1125 atomic regions from SNP 314512 to 315112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,780 DEBUG Processing 82/846 atomic regions from SNP 24338 to 24938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,970 DEBUG Processing 1050/1125 atomic regions from SNP 314812 to 315412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,066 DEBUG Processing 83/846 atomic regions from SNP 24638 to 25238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,277 DEBUG Processing 1051/1125 atomic regions from SNP 315112 to 315712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,338 DEBUG Processing 84/846 atomic regions from SNP 24938 to 25538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,589 DEBUG Processing 1052/1125 atomic regions from SNP 315412 to 316012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,593 DEBUG Processing 85/846 atomic regions from SNP 25238 to 25838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,850 DEBUG Processing 86/846 atomic regions from SNP 25538 to 26138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,926 DEBUG Processing 1053/1125 atomic regions from SNP 315712 to 316312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,101 DEBUG Processing 87/846 atomic regions from SNP 25838 to 26438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,244 DEBUG Processing 1054/1125 atomic regions from SNP 316012 to 316612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,352 DEBUG Processing 88/846 atomic regions from SNP 26138 to 26738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,562 DEBUG Processing 1055/1125 atomic regions from SNP 316312 to 316912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,614 DEBUG Processing 89/846 atomic regions from SNP 26438 to 27038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,865 DEBUG Processing 1056/1125 atomic regions from SNP 316612 to 317212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,870 DEBUG Processing 90/846 atomic regions from SNP 26738 to 27338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,121 DEBUG Processing 91/846 atomic regions from SNP 27038 to 27638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,165 DEBUG Processing 1057/1125 atomic regions from SNP 316912 to 317512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,375 DEBUG Processing 92/846 atomic regions from SNP 27338 to 27938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,460 DEBUG Processing 1058/1125 atomic regions from SNP 317212 to 317812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,625 DEBUG Processing 93/846 atomic regions from SNP 27638 to 28238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,760 DEBUG Processing 1059/1125 atomic regions from SNP 317512 to 318112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,879 DEBUG Processing 94/846 atomic regions from SNP 27938 to 28538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,078 DEBUG Processing 1060/1125 atomic regions from SNP 317812 to 318412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,142 DEBUG Processing 95/846 atomic regions from SNP 28238 to 28838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,391 DEBUG Processing 96/846 atomic regions from SNP 28538 to 29138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,424 DEBUG Processing 1061/1125 atomic regions from SNP 318112 to 318712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,644 DEBUG Processing 97/846 atomic regions from SNP 28838 to 29438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,767 DEBUG Processing 1062/1125 atomic regions from SNP 318412 to 319012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,890 DEBUG Processing 98/846 atomic regions from SNP 29138 to 29738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,099 DEBUG Processing 1063/1125 atomic regions from SNP 318712 to 319312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,133 DEBUG Processing 99/846 atomic regions from SNP 29438 to 30038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,393 DEBUG Processing 100/846 atomic regions from SNP 29738 to 30338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,430 DEBUG Processing 1064/1125 atomic regions from SNP 319012 to 319612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,644 DEBUG Processing 101/846 atomic regions from SNP 30038 to 30638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,765 DEBUG Processing 1065/1125 atomic regions from SNP 319312 to 319912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,884 DEBUG Processing 102/846 atomic regions from SNP 30338 to 30938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,099 DEBUG Processing 1066/1125 atomic regions from SNP 319612 to 320212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,124 DEBUG Processing 103/846 atomic regions from SNP 30638 to 31238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,371 DEBUG Processing 104/846 atomic regions from SNP 30938 to 31538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,423 DEBUG Processing 1067/1125 atomic regions from SNP 319912 to 320512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,614 DEBUG Processing 105/846 atomic regions from SNP 31238 to 31838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,731 DEBUG Processing 1068/1125 atomic regions from SNP 320212 to 320812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,862 DEBUG Processing 106/846 atomic regions from SNP 31538 to 32138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,032 DEBUG Processing 1069/1125 atomic regions from SNP 320512 to 321112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,120 DEBUG Processing 107/846 atomic regions from SNP 31838 to 32438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,344 DEBUG Processing 1070/1125 atomic regions from SNP 320812 to 321412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,386 DEBUG Processing 108/846 atomic regions from SNP 32138 to 32738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,639 DEBUG Processing 109/846 atomic regions from SNP 32438 to 33038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,650 DEBUG Processing 1071/1125 atomic regions from SNP 321112 to 321712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,903 DEBUG Processing 110/846 atomic regions from SNP 32738 to 33338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,959 DEBUG Processing 1072/1125 atomic regions from SNP 321412 to 322012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,154 DEBUG Processing 111/846 atomic regions from SNP 33038 to 33638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,264 DEBUG Processing 1073/1125 atomic regions from SNP 321712 to 322312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,412 DEBUG Processing 112/846 atomic regions from SNP 33338 to 33938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,577 DEBUG Processing 1074/1125 atomic regions from SNP 322012 to 322612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,668 DEBUG Processing 113/846 atomic regions from SNP 33638 to 34238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,885 DEBUG Processing 1075/1125 atomic regions from SNP 322312 to 322912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:01,922 DEBUG Processing 114/846 atomic regions from SNP 33938 to 34538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,170 DEBUG Processing 115/846 atomic regions from SNP 34238 to 34838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,196 DEBUG Processing 1076/1125 atomic regions from SNP 322612 to 323212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,424 DEBUG Processing 116/846 atomic regions from SNP 34538 to 35138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,509 DEBUG Processing 1077/1125 atomic regions from SNP 322912 to 323512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,673 DEBUG Processing 117/846 atomic regions from SNP 34838 to 35438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,813 DEBUG Processing 1078/1125 atomic regions from SNP 323212 to 323812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:02,924 DEBUG Processing 118/846 atomic regions from SNP 35138 to 35738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,113 DEBUG Processing 1079/1125 atomic regions from SNP 323512 to 324112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,175 DEBUG Processing 119/846 atomic regions from SNP 35438 to 36038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,415 DEBUG Processing 1080/1125 atomic regions from SNP 323812 to 324412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,432 DEBUG Processing 120/846 atomic regions from SNP 35738 to 36338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,692 DEBUG Processing 121/846 atomic regions from SNP 36038 to 36638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,723 DEBUG Processing 1081/1125 atomic regions from SNP 324112 to 324712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:03,951 DEBUG Processing 122/846 atomic regions from SNP 36338 to 36938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,035 DEBUG Processing 1082/1125 atomic regions from SNP 324412 to 325012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,210 DEBUG Processing 123/846 atomic regions from SNP 36638 to 37238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,348 DEBUG Processing 1083/1125 atomic regions from SNP 324712 to 325312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,457 DEBUG Processing 124/846 atomic regions from SNP 36938 to 37538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,652 DEBUG Processing 1084/1125 atomic regions from SNP 325012 to 325612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:04,700 DEBUG Processing 125/846 atomic regions from SNP 37238 to 37838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,948 DEBUG Processing 126/846 atomic regions from SNP 37538 to 38138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,958 DEBUG Processing 1085/1125 atomic regions from SNP 325312 to 325912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,192 DEBUG Processing 127/846 atomic regions from SNP 37838 to 38438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,259 DEBUG Processing 1086/1125 atomic regions from SNP 325612 to 326212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,448 DEBUG Processing 128/846 atomic regions from SNP 38138 to 38738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,567 DEBUG Processing 1087/1125 atomic regions from SNP 325912 to 326512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,694 DEBUG Processing 129/846 atomic regions from SNP 38438 to 39038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,872 DEBUG Processing 1088/1125 atomic regions from SNP 326212 to 326812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:05,945 DEBUG Processing 130/846 atomic regions from SNP 38738 to 39338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,184 DEBUG Processing 1089/1125 atomic regions from SNP 326512 to 327112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,204 DEBUG Processing 131/846 atomic regions from SNP 39038 to 39638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,467 DEBUG Processing 132/846 atomic regions from SNP 39338 to 39938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,491 DEBUG Processing 1090/1125 atomic regions from SNP 326812 to 327412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,727 DEBUG Processing 133/846 atomic regions from SNP 39638 to 40238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,794 DEBUG Processing 1091/1125 atomic regions from SNP 327112 to 327712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:06,999 DEBUG Processing 134/846 atomic regions from SNP 39938 to 40538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,120 DEBUG Processing 1092/1125 atomic regions from SNP 327412 to 328012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,262 DEBUG Processing 135/846 atomic regions from SNP 40238 to 40838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,457 DEBUG Processing 1093/1125 atomic regions from SNP 327712 to 328312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:07,523 DEBUG Processing 136/846 atomic regions from SNP 40538 to 41138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,781 DEBUG Processing 137/846 atomic regions from SNP 40838 to 41438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,788 DEBUG Processing 1094/1125 atomic regions from SNP 328012 to 328612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,033 DEBUG Processing 138/846 atomic regions from SNP 41138 to 41738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,094 DEBUG Processing 1095/1125 atomic regions from SNP 328312 to 328912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,285 DEBUG Processing 139/846 atomic regions from SNP 41438 to 42038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,401 DEBUG Processing 1096/1125 atomic regions from SNP 328612 to 329212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,545 DEBUG Processing 140/846 atomic regions from SNP 41738 to 42338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,699 DEBUG Processing 1097/1125 atomic regions from SNP 328912 to 329512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:08,793 DEBUG Processing 141/846 atomic regions from SNP 42038 to 42638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,001 DEBUG Processing 1098/1125 atomic regions from SNP 329212 to 329812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,039 DEBUG Processing 142/846 atomic regions from SNP 42338 to 42938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,325 DEBUG Processing 143/846 atomic regions from SNP 42638 to 43238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,333 DEBUG Processing 1099/1125 atomic regions from SNP 329512 to 330112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,603 DEBUG Processing 144/846 atomic regions from SNP 42938 to 43538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,680 DEBUG Processing 1100/1125 atomic regions from SNP 329812 to 330412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:09,875 DEBUG Processing 145/846 atomic regions from SNP 43238 to 43838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,025 DEBUG Processing 1101/1125 atomic regions from SNP 330112 to 330712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,153 DEBUG Processing 146/846 atomic regions from SNP 43538 to 44138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,359 DEBUG Processing 1102/1125 atomic regions from SNP 330412 to 331012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,418 DEBUG Processing 147/846 atomic regions from SNP 43838 to 44438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,695 DEBUG Processing 1103/1125 atomic regions from SNP 330712 to 331312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:10,700 DEBUG Processing 148/846 atomic regions from SNP 44138 to 44738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,989 DEBUG Processing 149/846 atomic regions from SNP 44438 to 45038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,030 DEBUG Processing 1104/1125 atomic regions from SNP 331012 to 331612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,273 DEBUG Processing 150/846 atomic regions from SNP 44738 to 45338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,350 DEBUG Processing 1105/1125 atomic regions from SNP 331312 to 331912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,548 DEBUG Processing 151/846 atomic regions from SNP 45038 to 45638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,686 DEBUG Processing 1106/1125 atomic regions from SNP 331612 to 332212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:11,840 DEBUG Processing 152/846 atomic regions from SNP 45338 to 45938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,026 DEBUG Processing 1107/1125 atomic regions from SNP 331912 to 332512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,122 DEBUG Processing 153/846 atomic regions from SNP 45638 to 46238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,355 DEBUG Processing 1108/1125 atomic regions from SNP 332212 to 332812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,405 DEBUG Processing 154/846 atomic regions from SNP 45938 to 46538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,655 DEBUG Processing 1109/1125 atomic regions from SNP 332512 to 333112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,691 DEBUG Processing 155/846 atomic regions from SNP 46238 to 46838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,955 DEBUG Processing 1110/1125 atomic regions from SNP 332812 to 333412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:12,970 DEBUG Processing 156/846 atomic regions from SNP 46538 to 47138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,243 DEBUG Processing 157/846 atomic regions from SNP 46838 to 47438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,278 DEBUG Processing 1111/1125 atomic regions from SNP 333112 to 333712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,505 DEBUG Processing 158/846 atomic regions from SNP 47138 to 47738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,589 DEBUG Processing 1112/1125 atomic regions from SNP 333412 to 334012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:13,773 DEBUG Processing 159/846 atomic regions from SNP 47438 to 48038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,910 DEBUG Processing 1113/1125 atomic regions from SNP 333712 to 334312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,066 DEBUG Processing 160/846 atomic regions from SNP 47738 to 48338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,231 DEBUG Processing 1114/1125 atomic regions from SNP 334012 to 334612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,345 DEBUG Processing 161/846 atomic regions from SNP 48038 to 48638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,528 DEBUG Processing 1115/1125 atomic regions from SNP 334312 to 334912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,617 DEBUG Processing 162/846 atomic regions from SNP 48338 to 48938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,832 DEBUG Processing 1116/1125 atomic regions from SNP 334612 to 335212 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:14,895 DEBUG Processing 163/846 atomic regions from SNP 48638 to 49238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,136 DEBUG Processing 164/846 atomic regions from SNP 48938 to 49538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,141 DEBUG Processing 1117/1125 atomic regions from SNP 334912 to 335512 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,375 DEBUG Processing 165/846 atomic regions from SNP 49238 to 49838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,423 DEBUG Processing 1118/1125 atomic regions from SNP 335212 to 335812 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,619 DEBUG Processing 166/846 atomic regions from SNP 49538 to 50138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,710 DEBUG Processing 1119/1125 atomic regions from SNP 335512 to 336112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:15,860 DEBUG Processing 167/846 atomic regions from SNP 49838 to 50438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,003 DEBUG Processing 1120/1125 atomic regions from SNP 335812 to 336412 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,112 DEBUG Processing 168/846 atomic regions from SNP 50138 to 50738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,296 DEBUG Processing 1121/1125 atomic regions from SNP 336112 to 336712 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,364 DEBUG Processing 169/846 atomic regions from SNP 50438 to 51038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,608 DEBUG Processing 1122/1125 atomic regions from SNP 336412 to 337012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:16,614 DEBUG Processing 170/846 atomic regions from SNP 50738 to 51338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,892 DEBUG Processing 171/846 atomic regions from SNP 51038 to 51638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,959 DEBUG Processing 1123/1125 atomic regions from SNP 336712 to 337312 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,184 DEBUG Processing 172/846 atomic regions from SNP 51338 to 51938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,326 DEBUG Processing 1124/1125 atomic regions from SNP 337012 to 337612 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,447 DEBUG Processing 173/846 atomic regions from SNP 51638 to 52238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,652 DEBUG Processing 1125/1125 atomic regions from SNP 337312 to 337912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:17,694 DEBUG Processing 174/846 atomic regions from SNP 51938 to 52538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,805 DEBUG Unique SNPs positions in subchromosome 1: 337913 2025-01-31 09:50:17,949 DEBUG Processing 175/846 atomic regions from SNP 52238 to 52838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,198 DEBUG Processing 176/846 atomic regions from SNP 52538 to 53138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,448 DEBUG Processing 177/846 atomic regions from SNP 52838 to 53438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,708 DEBUG Processing 178/846 atomic regions from SNP 53138 to 53738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,959 DEBUG Processing 179/846 atomic regions from SNP 53438 to 54038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,224 DEBUG Processing 180/846 atomic regions from SNP 53738 to 54338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,483 DEBUG Processing 181/846 atomic regions from SNP 54038 to 54638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,731 DEBUG Processing 182/846 atomic regions from SNP 54338 to 54938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,003 DEBUG Processing 183/846 atomic regions from SNP 54638 to 55238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,263 DEBUG Processing 184/846 atomic regions from SNP 54938 to 55538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,528 DEBUG Processing 185/846 atomic regions from SNP 55238 to 55838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,795 DEBUG Processing 186/846 atomic regions from SNP 55538 to 56138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,050 DEBUG Processing 187/846 atomic regions from SNP 55838 to 56438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,300 DEBUG Processing 188/846 atomic regions from SNP 56138 to 56738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,555 DEBUG Processing 189/846 atomic regions from SNP 56438 to 57038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,804 DEBUG Processing 190/846 atomic regions from SNP 56738 to 57338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,052 DEBUG Processing 191/846 atomic regions from SNP 57038 to 57638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,301 DEBUG Processing 192/846 atomic regions from SNP 57338 to 57938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,545 DEBUG Processing 193/846 atomic regions from SNP 57638 to 58238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,786 DEBUG Processing 194/846 atomic regions from SNP 57938 to 58538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,029 DEBUG Processing 195/846 atomic regions from SNP 58238 to 58838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,274 DEBUG Processing 196/846 atomic regions from SNP 58538 to 59138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,521 DEBUG Processing 197/846 atomic regions from SNP 58838 to 59438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,777 DEBUG Processing 198/846 atomic regions from SNP 59138 to 59738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,033 DEBUG Processing 199/846 atomic regions from SNP 59438 to 60038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,300 DEBUG Processing 200/846 atomic regions from SNP 59738 to 60338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,568 DEBUG Processing 201/846 atomic regions from SNP 60038 to 60638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,827 DEBUG Processing 202/846 atomic regions from SNP 60338 to 60938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,109 DEBUG Processing 203/846 atomic regions from SNP 60638 to 61238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,416 DEBUG Processing 204/846 atomic regions from SNP 60938 to 61538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,710 DEBUG Processing 205/846 atomic regions from SNP 61238 to 61838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,992 DEBUG Processing 206/846 atomic regions from SNP 61538 to 62138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,291 DEBUG Processing 207/846 atomic regions from SNP 61838 to 62438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,580 DEBUG Processing 208/846 atomic regions from SNP 62138 to 62738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,859 DEBUG Processing 209/846 atomic regions from SNP 62438 to 63038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,141 DEBUG Processing 210/846 atomic regions from SNP 62738 to 63338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,434 DEBUG Processing 211/846 atomic regions from SNP 63038 to 63638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,715 DEBUG Processing 212/846 atomic regions from SNP 63338 to 63938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,977 DEBUG Processing 213/846 atomic regions from SNP 63638 to 64238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,240 DEBUG Processing 214/846 atomic regions from SNP 63938 to 64538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,511 DEBUG Processing 215/846 atomic regions from SNP 64238 to 64838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,841 DEBUG Processing 216/846 atomic regions from SNP 64538 to 65138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,119 DEBUG Processing 217/846 atomic regions from SNP 64838 to 65438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,451 DEBUG Processing 218/846 atomic regions from SNP 65138 to 65738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,734 DEBUG Processing 219/846 atomic regions from SNP 65438 to 66038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,002 DEBUG Processing 220/846 atomic regions from SNP 65738 to 66338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,255 DEBUG Processing 221/846 atomic regions from SNP 66038 to 66638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,510 DEBUG Processing 222/846 atomic regions from SNP 66338 to 66938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,774 DEBUG Processing 223/846 atomic regions from SNP 66638 to 67238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,048 DEBUG Processing 224/846 atomic regions from SNP 66938 to 67538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,344 DEBUG Processing 225/846 atomic regions from SNP 67238 to 67838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,619 DEBUG Processing 226/846 atomic regions from SNP 67538 to 68138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,886 DEBUG Processing 227/846 atomic regions from SNP 67838 to 68438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,142 DEBUG Processing 228/846 atomic regions from SNP 68138 to 68738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,397 DEBUG Processing 229/846 atomic regions from SNP 68438 to 69038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,656 DEBUG Processing 230/846 atomic regions from SNP 68738 to 69338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,921 DEBUG Processing 231/846 atomic regions from SNP 69038 to 69638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,192 DEBUG Processing 232/846 atomic regions from SNP 69338 to 69938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,451 DEBUG Processing 233/846 atomic regions from SNP 69638 to 70238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,717 DEBUG Processing 234/846 atomic regions from SNP 69938 to 70538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,977 DEBUG Processing 235/846 atomic regions from SNP 70238 to 70838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,236 DEBUG Processing 236/846 atomic regions from SNP 70538 to 71138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,500 DEBUG Processing 237/846 atomic regions from SNP 70838 to 71438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,765 DEBUG Processing 238/846 atomic regions from SNP 71138 to 71738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,020 DEBUG Processing 239/846 atomic regions from SNP 71438 to 72038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,277 DEBUG Processing 240/846 atomic regions from SNP 71738 to 72338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,530 DEBUG Processing 241/846 atomic regions from SNP 72038 to 72638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,788 DEBUG Processing 242/846 atomic regions from SNP 72338 to 72938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,042 DEBUG Processing 243/846 atomic regions from SNP 72638 to 73238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,300 DEBUG Processing 244/846 atomic regions from SNP 72938 to 73538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,546 DEBUG Processing 245/846 atomic regions from SNP 73238 to 73838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,792 DEBUG Processing 246/846 atomic regions from SNP 73538 to 74138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,040 DEBUG Processing 247/846 atomic regions from SNP 73838 to 74438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,293 DEBUG Processing 248/846 atomic regions from SNP 74138 to 74738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,554 DEBUG Processing 249/846 atomic regions from SNP 74438 to 75038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,834 DEBUG Processing 250/846 atomic regions from SNP 74738 to 75338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,143 DEBUG Processing 251/846 atomic regions from SNP 75038 to 75638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,398 DEBUG Processing 252/846 atomic regions from SNP 75338 to 75938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,477 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:50:38,669 DEBUG Processing 253/846 atomic regions from SNP 75638 to 76238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,946 DEBUG Processing 254/846 atomic regions from SNP 75938 to 76538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,277 DEBUG Processing 255/846 atomic regions from SNP 76238 to 76838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,596 DEBUG Processing 256/846 atomic regions from SNP 76538 to 77138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,971 DEBUG Processing 257/846 atomic regions from SNP 76838 to 77438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,256 DEBUG Processing 258/846 atomic regions from SNP 77138 to 77738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,290 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:50:40,516 DEBUG Processing 259/846 atomic regions from SNP 77438 to 78038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,838 DEBUG Processing 260/846 atomic regions from SNP 77738 to 78338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,163 DEBUG Processing 261/846 atomic regions from SNP 78038 to 78638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,314 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:50:41,448 DEBUG Processing 262/846 atomic regions from SNP 78338 to 78938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,800 DEBUG Processing 263/846 atomic regions from SNP 78638 to 79238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,198 DEBUG Processing 264/846 atomic regions from SNP 78938 to 79538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,566 DEBUG Processing 265/846 atomic regions from SNP 79238 to 79838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,889 DEBUG Processing 266/846 atomic regions from SNP 79538 to 80138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,220 DEBUG Processing 267/846 atomic regions from SNP 79838 to 80438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,481 DEBUG Processing 268/846 atomic regions from SNP 80138 to 80738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,726 DEBUG Processing 269/846 atomic regions from SNP 80438 to 81038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,966 DEBUG Processing 270/846 atomic regions from SNP 80738 to 81338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,230 DEBUG Processing 271/846 atomic regions from SNP 81038 to 81638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,524 DEBUG Processing 272/846 atomic regions from SNP 81338 to 81938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,829 DEBUG Processing 273/846 atomic regions from SNP 81638 to 82238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,120 DEBUG Processing 274/846 atomic regions from SNP 81938 to 82538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,375 DEBUG Processing 275/846 atomic regions from SNP 82238 to 82838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,620 DEBUG Processing 276/846 atomic regions from SNP 82538 to 83138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,862 DEBUG Processing 277/846 atomic regions from SNP 82838 to 83438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,096 DEBUG Processing 278/846 atomic regions from SNP 83138 to 83738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,357 DEBUG Processing 279/846 atomic regions from SNP 83438 to 84038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,617 DEBUG Processing 280/846 atomic regions from SNP 83738 to 84338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,859 DEBUG Processing 281/846 atomic regions from SNP 84038 to 84638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,100 DEBUG Processing 282/846 atomic regions from SNP 84338 to 84938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,346 DEBUG Processing 283/846 atomic regions from SNP 84638 to 85238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,592 DEBUG Processing 284/846 atomic regions from SNP 84938 to 85538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,842 DEBUG Processing 285/846 atomic regions from SNP 85238 to 85838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,093 DEBUG Processing 286/846 atomic regions from SNP 85538 to 86138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,345 DEBUG Processing 287/846 atomic regions from SNP 85838 to 86438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,590 DEBUG Processing 288/846 atomic regions from SNP 86138 to 86738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,840 DEBUG Processing 289/846 atomic regions from SNP 86438 to 87038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,085 DEBUG Processing 290/846 atomic regions from SNP 86738 to 87338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,328 DEBUG Processing 291/846 atomic regions from SNP 87038 to 87638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,576 DEBUG Processing 292/846 atomic regions from SNP 87338 to 87938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,819 DEBUG Processing 293/846 atomic regions from SNP 87638 to 88238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,060 DEBUG Processing 294/846 atomic regions from SNP 87938 to 88538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,309 DEBUG Processing 295/846 atomic regions from SNP 88238 to 88838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,549 DEBUG Processing 296/846 atomic regions from SNP 88538 to 89138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,785 DEBUG Processing 297/846 atomic regions from SNP 88838 to 89438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,031 DEBUG Processing 298/846 atomic regions from SNP 89138 to 89738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,326 DEBUG Processing 299/846 atomic regions from SNP 89438 to 90038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,610 DEBUG Processing 300/846 atomic regions from SNP 89738 to 90338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,895 DEBUG Processing 301/846 atomic regions from SNP 90038 to 90638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,165 DEBUG Processing 302/846 atomic regions from SNP 90338 to 90938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,416 DEBUG Processing 303/846 atomic regions from SNP 90638 to 91238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,755 DEBUG Processing 304/846 atomic regions from SNP 90938 to 91538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,110 DEBUG Processing 305/846 atomic regions from SNP 91238 to 91838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,442 DEBUG Processing 306/846 atomic regions from SNP 91538 to 92138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,701 DEBUG Processing 307/846 atomic regions from SNP 91838 to 92438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,962 DEBUG Processing 308/846 atomic regions from SNP 92138 to 92738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,208 DEBUG Processing 309/846 atomic regions from SNP 92438 to 93038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,452 DEBUG Processing 310/846 atomic regions from SNP 92738 to 93338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,696 DEBUG Processing 311/846 atomic regions from SNP 93038 to 93638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,960 DEBUG Processing 312/846 atomic regions from SNP 93338 to 93938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,224 DEBUG Processing 313/846 atomic regions from SNP 93638 to 94238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,473 DEBUG Processing 314/846 atomic regions from SNP 93938 to 94538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,717 DEBUG Processing 315/846 atomic regions from SNP 94238 to 94838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,963 DEBUG Processing 316/846 atomic regions from SNP 94538 to 95138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,214 DEBUG Processing 317/846 atomic regions from SNP 94838 to 95438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,457 DEBUG Processing 318/846 atomic regions from SNP 95138 to 95738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,699 DEBUG Processing 319/846 atomic regions from SNP 95438 to 96038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,943 DEBUG Processing 320/846 atomic regions from SNP 95738 to 96338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,191 DEBUG Processing 321/846 atomic regions from SNP 96038 to 96638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,433 DEBUG Processing 322/846 atomic regions from SNP 96338 to 96938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,676 DEBUG Processing 323/846 atomic regions from SNP 96638 to 97238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,920 DEBUG Processing 324/846 atomic regions from SNP 96938 to 97538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,157 DEBUG Processing 325/846 atomic regions from SNP 97238 to 97838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,300 DEBUG Subchromosome time: 417.32292933389544, subchromosome SNPs: 304430 2025-01-31 09:50:58,303 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:58,395 DEBUG Processing 326/846 atomic regions from SNP 97538 to 98138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,634 DEBUG Processing 327/846 atomic regions from SNP 97838 to 98438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,875 DEBUG Processing 328/846 atomic regions from SNP 98138 to 98738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,118 DEBUG Processing 329/846 atomic regions from SNP 98438 to 99038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,279 DEBUG Segmenting atomic regions: 2025-01-31 09:50:59,374 DEBUG Processing 330/846 atomic regions from SNP 98738 to 99338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,419 DEBUG Processing 1/25 atomic regions from SNP 0 to 603 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:59,628 DEBUG Processing 331/846 atomic regions from SNP 99038 to 99638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,703 DEBUG Processing 2/25 atomic regions from SNP 303 to 906 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:59,927 DEBUG Processing 332/846 atomic regions from SNP 99338 to 99938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,002 DEBUG Processing 3/25 atomic regions from SNP 606 to 1209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:00,176 DEBUG Processing 333/846 atomic regions from SNP 99638 to 100238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,298 DEBUG Processing 4/25 atomic regions from SNP 909 to 1512 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:00,416 DEBUG Processing 334/846 atomic regions from SNP 99938 to 100538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,603 DEBUG Processing 5/25 atomic regions from SNP 1212 to 1815 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:00,663 DEBUG Processing 335/846 atomic regions from SNP 100238 to 100838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,884 DEBUG Processing 6/25 atomic regions from SNP 1515 to 2118 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:00,913 DEBUG Processing 336/846 atomic regions from SNP 100538 to 101138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,238 DEBUG Processing 337/846 atomic regions from SNP 100838 to 101438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,241 DEBUG Processing 7/25 atomic regions from SNP 1818 to 2421 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:01,625 DEBUG Processing 338/846 atomic regions from SNP 101138 to 101738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,663 DEBUG Processing 8/25 atomic regions from SNP 2121 to 2724 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:01,963 DEBUG Processing 339/846 atomic regions from SNP 101438 to 102038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,065 DEBUG Processing 9/25 atomic regions from SNP 2424 to 3027 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:02,222 DEBUG Processing 340/846 atomic regions from SNP 101738 to 102338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,371 DEBUG Processing 10/25 atomic regions from SNP 2727 to 3330 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:02,526 DEBUG Processing 341/846 atomic regions from SNP 102038 to 102638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,665 DEBUG Processing 11/25 atomic regions from SNP 3030 to 3633 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:02,767 DEBUG Processing 342/846 atomic regions from SNP 102338 to 102938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,952 DEBUG Processing 12/25 atomic regions from SNP 3333 to 3936 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:03,018 DEBUG Processing 343/846 atomic regions from SNP 102638 to 103238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,066 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:51:03,071 DEBUG chr10: Signal quantile: 0.987. signal threshold: 13. Best RMSEA: 0.009 2025-01-31 09:51:03,249 DEBUG Processing 13/25 atomic regions from SNP 3636 to 4239 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:03,262 DEBUG Processing 344/846 atomic regions from SNP 102938 to 103538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,498 DEBUG Processing 345/846 atomic regions from SNP 103238 to 103838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,553 DEBUG Processing 14/25 atomic regions from SNP 3939 to 4542 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:03,731 DEBUG Processing 346/846 atomic regions from SNP 103538 to 104138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,868 DEBUG Processing 15/25 atomic regions from SNP 4242 to 4845 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:03,963 DEBUG Processing 347/846 atomic regions from SNP 103838 to 104438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,194 DEBUG Processing 16/25 atomic regions from SNP 4545 to 5148 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:04,213 DEBUG Processing 348/846 atomic regions from SNP 104138 to 104738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,531 DEBUG Processing 349/846 atomic regions from SNP 104438 to 105038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,575 DEBUG Processing 17/25 atomic regions from SNP 4848 to 5451 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:04,794 DEBUG Processing 350/846 atomic regions from SNP 104738 to 105338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,890 DEBUG Processing 18/25 atomic regions from SNP 5151 to 5754 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:05,084 DEBUG Processing 351/846 atomic regions from SNP 105038 to 105638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,221 DEBUG Processing 19/25 atomic regions from SNP 5454 to 6057 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:05,404 DEBUG Processing 352/846 atomic regions from SNP 105338 to 105938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,646 DEBUG Processing 20/25 atomic regions from SNP 5757 to 6360 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:05,682 DEBUG Processing 353/846 atomic regions from SNP 105638 to 106238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,832 DEBUG chr10 total SNP count: 222301 2025-01-31 09:51:05,832 DEBUG chr10 length: 130694993 2025-01-31 09:51:05,832 DEBUG ----------------------------------------- 2025-01-31 09:51:05,832 INFO Processing SNPs in chr10 2025-01-31 09:51:05,944 DEBUG Processing 354/846 atomic regions from SNP 105938 to 106538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,971 DEBUG Processing 21/25 atomic regions from SNP 6060 to 6663 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:06,062 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 222301)] 2025-01-31 09:51:06,185 DEBUG Processing 355/846 atomic regions from SNP 106238 to 106838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,219 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:06,283 DEBUG Processing 22/25 atomic regions from SNP 6363 to 6966 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:06,429 DEBUG Processing 356/846 atomic regions from SNP 106538 to 107138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,599 DEBUG Processing 23/25 atomic regions from SNP 6666 to 7269 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:06,669 DEBUG Processing 357/846 atomic regions from SNP 106838 to 107438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,912 DEBUG Processing 358/846 atomic regions from SNP 107138 to 107738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,915 DEBUG Processing 24/25 atomic regions from SNP 6969 to 7571 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:07,156 DEBUG Processing 359/846 atomic regions from SNP 107438 to 108038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,224 DEBUG Processing 25/25 atomic regions from SNP 7271 to 7873 for chr2 (subchromosome 2 of 2). 2025-01-31 09:51:07,389 DEBUG Unique SNPs positions in subchromosome 2: 7874 2025-01-31 09:51:07,397 DEBUG Processing 360/846 atomic regions from SNP 107738 to 108338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,400 DEBUG Subchromosome time: 9.09662401303649, subchromosome SNPs: 7874 2025-01-31 09:51:07,400 DEBUG Estimated BADs: [2.21, 0.37, 2.21, 0.74, 4.42, 1.11, 8.84, 4.42, 0.44, 4.42, 0.37, 2.21, 0.32, 1.11, 0.37, 4.42, 0.44, 2.21, 0.55, 2.21, 4.42, 2.21, 0.37, 2.21, 11.05, 0.32, 4.42, 0.22, 2.21, 6.63, 2.21, 0.74, 4.42, 1.11, 4.42, 0.37, 2.21, 4.42, 17.68, 2.21, 0.37, 1.11, 4.42, 1.11, 6.63, 2.21, 6.63, 2.21, 4.42, 2.21, 11.05] SNP counts: [7925, 2985, 9027, 6266, 3428, 8363, 14798, 6681, 1092, 4357, 8604, 1800, 4196, 9374, 6139, 684, 1204, 6904, 10194, 3363, 7385, 13302, 3824, 2258, 1140, 7861, 7950, 9604, 4272, 846, 6581, 7703, 1026, 10191, 8142, 2055, 5305, 7562, 447, 10682, 3893, 7915, 2008, 10563, 13730, 8703, 8993, 7881, 5224, 3750, 4124] SNP IDs counts: [7925, 2985, 9027, 6266, 3428, 8363, 14798, 6681, 1092, 4357, 8604, 1800, 4196, 9374, 6139, 684, 1204, 6904, 10194, 3363, 7385, 13302, 3824, 2258, 1140, 7861, 7950, 9604, 4272, 846, 6581, 7703, 1026, 10191, 8142, 2055, 5305, 7562, 447, 10682, 3893, 7915, 2008, 10563, 13730, 8703, 8993, 7881, 5224, 3750, 4124] Critical gap: 729599bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.39Mbp, 9.24Mbp, 14.31Mbp, 18.03Mbp, 19.92Mbp, 24.92Mbp, 32.76Mbp, 36.27Mbp, 36.98Mbp, 39.38Mbp, 44.50Mbp, 45.46Mbp, 48.04Mbp, 53.20Mbp, 57.11Mbp, 57.49Mbp, 58.19Mbp, 62.01Mbp, 67.86Mbp, 69.71Mbp, 73.61Mbp, 80.80Mbp, 83.23Mbp, 84.65Mbp, 85.26Mbp, 90.47Mbp, 94.67Mbp, 101.19Mbp, 103.48Mbp, 103.93Mbp, 107.54Mbp, 112.24Mbp, 112.81Mbp, 118.48Mbp, 122.86Mbp, 124.10Mbp, 127.00Mbp, 131.03Mbp, 131.27Mbp, 137.14Mbp, 139.39Mbp, 143.83Mbp, 144.91Mbp, 150.90Mbp, 158.54Mbp, 163.25Mbp, 168.04Mbp, 172.25Mbp, 175.18Mbp[1.52Mbp], 179.81Mbp, 182.11Mbp] 2025-01-31 09:51:07,400 DEBUG chr2 time: 9.09726407006383 s 2025-01-31 09:51:07,611 DEBUG chr2: Fitting background model for 51 segments 2025-01-31 09:51:07,644 DEBUG Processing 361/846 atomic regions from SNP 108038 to 108638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,892 DEBUG Processing 362/846 atomic regions from SNP 108338 to 108938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,149 DEBUG Processing 363/846 atomic regions from SNP 108638 to 109238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,396 DEBUG Processing 364/846 atomic regions from SNP 108938 to 109538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,642 DEBUG Processing 365/846 atomic regions from SNP 109238 to 109838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,883 DEBUG Processing 366/846 atomic regions from SNP 109538 to 110138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,131 DEBUG Processing 367/846 atomic regions from SNP 109838 to 110438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,408 DEBUG Processing 368/846 atomic regions from SNP 110138 to 110738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,703 DEBUG Processing 369/846 atomic regions from SNP 110438 to 111038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,984 DEBUG Processing 370/846 atomic regions from SNP 110738 to 111338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,241 DEBUG Processing 371/846 atomic regions from SNP 111038 to 111638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,554 DEBUG Processing 372/846 atomic regions from SNP 111338 to 111938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,891 DEBUG Processing 373/846 atomic regions from SNP 111638 to 112238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,016 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:51:11,018 DEBUG chr8: Signal quantile: 0.989. signal threshold: 17. Best RMSEA: 0.009 2025-01-31 09:51:11,202 DEBUG Processing 374/846 atomic regions from SNP 111938 to 112538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,474 DEBUG Processing 375/846 atomic regions from SNP 112238 to 112838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,740 DEBUG Processing 376/846 atomic regions from SNP 112538 to 113138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,996 DEBUG Processing 377/846 atomic regions from SNP 112838 to 113438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,252 DEBUG Processing 378/846 atomic regions from SNP 113138 to 113738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,510 DEBUG Processing 379/846 atomic regions from SNP 113438 to 114038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,768 DEBUG Processing 380/846 atomic regions from SNP 113738 to 114338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,009 DEBUG Processing 381/846 atomic regions from SNP 114038 to 114638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,249 DEBUG Processing 382/846 atomic regions from SNP 114338 to 114938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,512 DEBUG Processing 383/846 atomic regions from SNP 114638 to 115238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,590 DEBUG chr8 total SNP count: 217802 2025-01-31 09:51:13,591 DEBUG chr8 length: 129401213 2025-01-31 09:51:13,591 DEBUG ----------------------------------------- 2025-01-31 09:51:13,591 INFO Processing SNPs in chr8 2025-01-31 09:51:13,764 DEBUG Processing 384/846 atomic regions from SNP 114938 to 115538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,814 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217802)] 2025-01-31 09:51:13,972 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:14,017 DEBUG Processing 385/846 atomic regions from SNP 115238 to 115838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,306 DEBUG Processing 386/846 atomic regions from SNP 115538 to 116138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,675 DEBUG Processing 387/846 atomic regions from SNP 115838 to 116438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,964 DEBUG Processing 388/846 atomic regions from SNP 116138 to 116738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,287 DEBUG Processing 389/846 atomic regions from SNP 116438 to 117038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,626 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:51:15,627 DEBUG chr7: Signal quantile: 0.985. signal threshold: 15. Best RMSEA: 0.008 2025-01-31 09:51:15,659 DEBUG Processing 390/846 atomic regions from SNP 116738 to 117338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,946 DEBUG Processing 391/846 atomic regions from SNP 117038 to 117638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,222 DEBUG Processing 392/846 atomic regions from SNP 117338 to 117938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,493 DEBUG Processing 393/846 atomic regions from SNP 117638 to 118238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,769 DEBUG Processing 394/846 atomic regions from SNP 117938 to 118538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,100 DEBUG Processing 395/846 atomic regions from SNP 118238 to 118838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,445 DEBUG Processing 396/846 atomic regions from SNP 118538 to 119138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,739 DEBUG Processing 397/846 atomic regions from SNP 118838 to 119438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,022 DEBUG Processing 398/846 atomic regions from SNP 119138 to 119738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,310 DEBUG Processing 399/846 atomic regions from SNP 119438 to 120038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,561 DEBUG chr7 total SNP count: 230413 2025-01-31 09:51:18,561 DEBUG chr7 length: 145441459 2025-01-31 09:51:18,561 DEBUG ----------------------------------------- 2025-01-31 09:51:18,561 DEBUG Processing 400/846 atomic regions from SNP 119738 to 120338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,561 INFO Processing SNPs in chr7 2025-01-31 09:51:18,814 DEBUG Processing 401/846 atomic regions from SNP 120038 to 120638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,936 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20686), (20686, 20690), (20690, 230413)] 2025-01-31 09:51:19,044 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:19,047 DEBUG Processing 402/846 atomic regions from SNP 120338 to 120938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,282 DEBUG Processing 403/846 atomic regions from SNP 120638 to 121238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,522 DEBUG Processing 404/846 atomic regions from SNP 120938 to 121538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,758 DEBUG Processing 405/846 atomic regions from SNP 121238 to 121838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,994 DEBUG Processing 406/846 atomic regions from SNP 121538 to 122138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,233 DEBUG Processing 407/846 atomic regions from SNP 121838 to 122438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,475 DEBUG Processing 408/846 atomic regions from SNP 122138 to 122738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,718 DEBUG Processing 409/846 atomic regions from SNP 122438 to 123038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,966 DEBUG Processing 410/846 atomic regions from SNP 122738 to 123338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,210 DEBUG Processing 411/846 atomic regions from SNP 123038 to 123638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,451 DEBUG Processing 412/846 atomic regions from SNP 123338 to 123938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,597 DEBUG Segmenting atomic regions: 2025-01-31 09:51:21,685 DEBUG Processing 413/846 atomic regions from SNP 123638 to 124238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,703 DEBUG Processing 1/67 atomic regions from SNP 0 to 605 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:21,924 DEBUG Processing 414/846 atomic regions from SNP 123938 to 124538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,933 DEBUG Processing 2/67 atomic regions from SNP 305 to 910 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:22,165 DEBUG Processing 415/846 atomic regions from SNP 124238 to 124838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,166 DEBUG Processing 3/67 atomic regions from SNP 610 to 1215 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:22,410 DEBUG Processing 416/846 atomic regions from SNP 124538 to 125138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,432 DEBUG Processing 4/67 atomic regions from SNP 915 to 1520 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:22,652 DEBUG Processing 417/846 atomic regions from SNP 124838 to 125438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,685 DEBUG Processing 5/67 atomic regions from SNP 1220 to 1825 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:22,905 DEBUG Processing 418/846 atomic regions from SNP 125138 to 125738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,943 DEBUG Processing 6/67 atomic regions from SNP 1525 to 2130 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:23,159 DEBUG Processing 419/846 atomic regions from SNP 125438 to 126038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,191 DEBUG Processing 7/67 atomic regions from SNP 1830 to 2435 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:23,416 DEBUG Processing 420/846 atomic regions from SNP 125738 to 126338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,461 DEBUG Processing 8/67 atomic regions from SNP 2135 to 2740 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:23,671 DEBUG Processing 421/846 atomic regions from SNP 126038 to 126638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,732 DEBUG Processing 9/67 atomic regions from SNP 2440 to 3045 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:23,923 DEBUG Processing 422/846 atomic regions from SNP 126338 to 126938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,005 DEBUG Processing 10/67 atomic regions from SNP 2745 to 3350 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:24,179 DEBUG Processing 423/846 atomic regions from SNP 126638 to 127238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,278 DEBUG Processing 11/67 atomic regions from SNP 3050 to 3655 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:24,436 DEBUG Processing 424/846 atomic regions from SNP 126938 to 127538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,514 DEBUG Processing 12/67 atomic regions from SNP 3355 to 3960 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:24,688 DEBUG Processing 425/846 atomic regions from SNP 127238 to 127838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,742 DEBUG Processing 13/67 atomic regions from SNP 3660 to 4265 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:24,936 DEBUG Processing 426/846 atomic regions from SNP 127538 to 128138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,964 DEBUG Processing 14/67 atomic regions from SNP 3965 to 4570 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:25,185 DEBUG Processing 427/846 atomic regions from SNP 127838 to 128438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,191 DEBUG Processing 15/67 atomic regions from SNP 4270 to 4875 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:25,447 DEBUG Processing 16/67 atomic regions from SNP 4575 to 5180 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:25,447 DEBUG Processing 428/846 atomic regions from SNP 128138 to 128738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,706 DEBUG Processing 429/846 atomic regions from SNP 128438 to 129038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,711 DEBUG Processing 17/67 atomic regions from SNP 4880 to 5485 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:25,958 DEBUG Processing 18/67 atomic regions from SNP 5185 to 5789 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:25,959 DEBUG Processing 430/846 atomic regions from SNP 128738 to 129338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,214 DEBUG Processing 19/67 atomic regions from SNP 5489 to 6093 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:26,217 DEBUG Processing 431/846 atomic regions from SNP 129038 to 129638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,477 DEBUG Processing 20/67 atomic regions from SNP 5793 to 6397 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:26,480 DEBUG Processing 432/846 atomic regions from SNP 129338 to 129938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,704 DEBUG Processing 21/67 atomic regions from SNP 6097 to 6701 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:26,728 DEBUG Processing 433/846 atomic regions from SNP 129638 to 130238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,933 DEBUG Processing 22/67 atomic regions from SNP 6401 to 7005 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:26,980 DEBUG Processing 434/846 atomic regions from SNP 129938 to 130538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,156 DEBUG Processing 23/67 atomic regions from SNP 6705 to 7309 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:27,236 DEBUG Processing 435/846 atomic regions from SNP 130238 to 130838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,387 DEBUG Processing 24/67 atomic regions from SNP 7009 to 7613 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:27,500 DEBUG Processing 436/846 atomic regions from SNP 130538 to 131138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,619 DEBUG Processing 25/67 atomic regions from SNP 7313 to 7917 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:27,750 DEBUG Processing 437/846 atomic regions from SNP 130838 to 131438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,844 DEBUG Processing 26/67 atomic regions from SNP 7617 to 8221 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:27,862 DEBUG Subchromosome time: 449.2438532151282, subchromosome SNPs: 337913 2025-01-31 09:51:27,863 DEBUG Estimated BADs: [0.81, 4.87, 0.81, 4.87, 1.22, 0.61, 9.74, 0.81, 4.87, 2.44, 9.74, 4.87, 2.44, 0.81, 2.44, 7.31, 2.44, 9.74, 2.44, 7.31, 1.22, 4.87, 17.05, 1.22, 19.49, 1.22, 7.31, 24.36, 4.87, 7.31, 0.61, 2.44, 0.49, 1.22, 4.87, 0.41, 7.31, 2.44, 0.49, 2.44, 9.74, 2.44, 0.49, 4.87, 0.49, 4.87, 19.49, 2.44, 14.62, 4.87, 1.22, 2.44, 24.36, 4.87, 9.74, 4.87, 2.44, 9.74, 4.87] SNP counts: [10636, 905, 5255, 753, 7831, 21379, 145, 4190, 2680, 1935, 1802, 4805, 8988, 12649, 11396, 2754, 5106, 944, 1670, 1990, 12505, 3762, 2385, 12909, 134, 3484, 1818, 431, 8883, 5366, 4519, 2098, 10186, 2417, 2092, 18414, 3489, 4192, 3322, 11412, 10847, 5674, 6588, 1185, 9687, 30932, 349, 6301, 1057, 2660, 6866, 2570, 163, 2065, 4829, 6096, 9953, 2259, 6201] SNP IDs counts: [10636, 905, 5255, 753, 7831, 21379, 145, 4190, 2680, 1935, 1802, 4805, 8988, 12649, 11396, 2754, 5106, 944, 1670, 1990, 12505, 3762, 2385, 12909, 134, 3484, 1818, 431, 8883, 5366, 4519, 2098, 10186, 2417, 2092, 18414, 3489, 4192, 3322, 11412, 10847, 5674, 6588, 1185, 9687, 30932, 349, 6301, 1057, 2660, 6866, 2570, 163, 2065, 4829, 6096, 9953, 2259, 6201] Critical gap: 760487bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 10.02Mbp, 13.12Mbp, 13.52Mbp, 18.17Mbp, 30.87Mbp, 30.95Mbp, 33.45Mbp, 34.90Mbp, 35.98Mbp, 36.93Mbp, 39.48Mbp, 44.39Mbp, 52.03Mbp, 58.39Mbp, 59.88Mbp, 62.69Mbp, 63.18Mbp, 64.10Mbp, 65.19Mbp, 72.20Mbp, 74.24Mbp, 75.56Mbp, 82.79Mbp, 82.86Mbp, 84.84Mbp, 86.31Mbp, 86.53Mbp, 91.30Mbp, 94.30Mbp, 96.98Mbp, 98.20Mbp, 104.43Mbp, 105.81Mbp, 106.96Mbp, 118.31Mbp, 120.14Mbp, 122.46Mbp, 124.37Mbp, 130.71Mbp, 136.41Mbp, 139.53Mbp, 143.70Mbp, 144.41Mbp, 150.37Mbp, 167.22Mbp, 167.40Mbp, 170.83Mbp, 171.41Mbp, 172.87Mbp, 176.81Mbp, 178.30Mbp, 178.38Mbp, 179.47Mbp, 182.04Mbp, 185.42Mbp, 190.73Mbp, 191.93Mbp, 195.47Mbp] 2025-01-31 09:51:27,863 DEBUG chr1 time: 449.24459324777126 s 2025-01-31 09:51:27,991 DEBUG Processing 438/846 atomic regions from SNP 131138 to 131738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,076 DEBUG Processing 27/67 atomic regions from SNP 7921 to 8525 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:28,090 DEBUG chr1: Fitting background model for 59 segments 2025-01-31 09:51:28,237 DEBUG Processing 439/846 atomic regions from SNP 131438 to 132038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,311 DEBUG Processing 28/67 atomic regions from SNP 8225 to 8829 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:28,479 DEBUG Processing 440/846 atomic regions from SNP 131738 to 132338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,542 DEBUG Processing 29/67 atomic regions from SNP 8529 to 9133 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:28,722 DEBUG Processing 441/846 atomic regions from SNP 132038 to 132638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,775 DEBUG Processing 30/67 atomic regions from SNP 8833 to 9437 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:28,973 DEBUG Processing 442/846 atomic regions from SNP 132338 to 132938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,003 DEBUG Processing 31/67 atomic regions from SNP 9137 to 9741 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:29,224 DEBUG Processing 443/846 atomic regions from SNP 132638 to 133238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,232 DEBUG Processing 32/67 atomic regions from SNP 9441 to 10045 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:29,462 DEBUG Processing 33/67 atomic regions from SNP 9745 to 10349 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:29,486 DEBUG Processing 444/846 atomic regions from SNP 132938 to 133538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,699 DEBUG Processing 34/67 atomic regions from SNP 10049 to 10653 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:29,745 DEBUG Processing 445/846 atomic regions from SNP 133238 to 133838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,967 DEBUG Processing 35/67 atomic regions from SNP 10353 to 10957 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:29,999 DEBUG Processing 446/846 atomic regions from SNP 133538 to 134138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,230 DEBUG Processing 36/67 atomic regions from SNP 10657 to 11261 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:30,252 DEBUG Processing 447/846 atomic regions from SNP 133838 to 134438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,458 DEBUG Processing 37/67 atomic regions from SNP 10961 to 11565 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:30,505 DEBUG Processing 448/846 atomic regions from SNP 134138 to 134738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,682 DEBUG Processing 38/67 atomic regions from SNP 11265 to 11869 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:30,752 DEBUG Processing 449/846 atomic regions from SNP 134438 to 135038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,906 DEBUG Processing 39/67 atomic regions from SNP 11569 to 12173 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:30,994 DEBUG Processing 450/846 atomic regions from SNP 134738 to 135338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,137 DEBUG Processing 40/67 atomic regions from SNP 11873 to 12477 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:31,241 DEBUG Processing 451/846 atomic regions from SNP 135038 to 135638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,369 DEBUG Processing 41/67 atomic regions from SNP 12177 to 12781 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:31,485 DEBUG Processing 452/846 atomic regions from SNP 135338 to 135938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,608 DEBUG Processing 42/67 atomic regions from SNP 12481 to 13085 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:31,734 DEBUG Processing 453/846 atomic regions from SNP 135638 to 136238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,839 DEBUG Processing 43/67 atomic regions from SNP 12785 to 13389 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:31,986 DEBUG Processing 454/846 atomic regions from SNP 135938 to 136538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,073 DEBUG Processing 44/67 atomic regions from SNP 13089 to 13693 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:32,259 DEBUG Processing 455/846 atomic regions from SNP 136238 to 136838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,297 DEBUG Processing 45/67 atomic regions from SNP 13393 to 13997 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:32,523 DEBUG Processing 46/67 atomic regions from SNP 13697 to 14301 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:32,525 DEBUG Processing 456/846 atomic regions from SNP 136538 to 137138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,793 DEBUG Processing 47/67 atomic regions from SNP 14001 to 14605 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:32,815 DEBUG Processing 457/846 atomic regions from SNP 136838 to 137438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,058 DEBUG Processing 48/67 atomic regions from SNP 14305 to 14909 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:33,099 DEBUG Processing 458/846 atomic regions from SNP 137138 to 137738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,321 DEBUG Processing 49/67 atomic regions from SNP 14609 to 15213 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:33,385 DEBUG Processing 459/846 atomic regions from SNP 137438 to 138038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,587 DEBUG Processing 50/67 atomic regions from SNP 14913 to 15517 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:33,685 DEBUG Processing 460/846 atomic regions from SNP 137738 to 138338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,831 DEBUG Processing 51/67 atomic regions from SNP 15217 to 15821 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:33,969 DEBUG Processing 461/846 atomic regions from SNP 138038 to 138638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,034 DEBUG Segmenting atomic regions: 2025-01-31 09:51:34,097 DEBUG Processing 52/67 atomic regions from SNP 15521 to 16125 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:34,136 DEBUG Processing 1/740 atomic regions from SNP 0 to 600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,245 DEBUG Processing 462/846 atomic regions from SNP 138338 to 138938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,376 DEBUG Processing 2/740 atomic regions from SNP 300 to 900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,379 DEBUG Processing 53/67 atomic regions from SNP 15825 to 16429 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:34,503 DEBUG Processing 463/846 atomic regions from SNP 138638 to 139238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,644 DEBUG Processing 3/740 atomic regions from SNP 600 to 1200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,674 DEBUG Processing 54/67 atomic regions from SNP 16129 to 16733 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:34,770 DEBUG Processing 464/846 atomic regions from SNP 138938 to 139538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,925 DEBUG Processing 4/740 atomic regions from SNP 900 to 1500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,956 DEBUG Processing 55/67 atomic regions from SNP 16433 to 17037 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:35,039 DEBUG Processing 465/846 atomic regions from SNP 139238 to 139838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,162 DEBUG Processing 5/740 atomic regions from SNP 1200 to 1800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,204 DEBUG Processing 56/67 atomic regions from SNP 16737 to 17341 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:35,295 DEBUG Processing 466/846 atomic regions from SNP 139538 to 140138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,421 DEBUG Processing 6/740 atomic regions from SNP 1500 to 2100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,453 DEBUG Processing 57/67 atomic regions from SNP 17041 to 17645 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:35,549 DEBUG Processing 467/846 atomic regions from SNP 139838 to 140438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,665 DEBUG Processing 7/740 atomic regions from SNP 1800 to 2400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,700 DEBUG Processing 58/67 atomic regions from SNP 17345 to 17949 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:35,803 DEBUG Processing 468/846 atomic regions from SNP 140138 to 140738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,916 DEBUG Processing 8/740 atomic regions from SNP 2100 to 2700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,943 DEBUG Processing 59/67 atomic regions from SNP 17649 to 18253 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:36,051 DEBUG Processing 469/846 atomic regions from SNP 140438 to 141038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,179 DEBUG Processing 9/740 atomic regions from SNP 2400 to 3000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,192 DEBUG Processing 60/67 atomic regions from SNP 17953 to 18557 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:36,325 DEBUG Processing 470/846 atomic regions from SNP 140738 to 141338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,412 DEBUG Processing 10/740 atomic regions from SNP 2700 to 3300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,430 DEBUG Processing 61/67 atomic regions from SNP 18257 to 18861 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:36,607 DEBUG Processing 471/846 atomic regions from SNP 141038 to 141638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,646 DEBUG Processing 11/740 atomic regions from SNP 3000 to 3600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,694 DEBUG Processing 62/67 atomic regions from SNP 18561 to 19165 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:36,883 DEBUG Processing 472/846 atomic regions from SNP 141338 to 141938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,883 DEBUG Processing 12/740 atomic regions from SNP 3300 to 3900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,977 DEBUG Processing 63/67 atomic regions from SNP 18865 to 19469 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:37,122 DEBUG Processing 13/740 atomic regions from SNP 3600 to 4200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,127 DEBUG Processing 473/846 atomic regions from SNP 141638 to 142238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,260 DEBUG Processing 64/67 atomic regions from SNP 19169 to 19773 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:37,361 DEBUG Processing 14/740 atomic regions from SNP 3900 to 4500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,413 DEBUG Processing 474/846 atomic regions from SNP 141938 to 142538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,534 DEBUG Processing 65/67 atomic regions from SNP 19473 to 20077 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:37,591 DEBUG Processing 15/740 atomic regions from SNP 4200 to 4800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,703 DEBUG Processing 475/846 atomic regions from SNP 142238 to 142838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,817 DEBUG Processing 66/67 atomic regions from SNP 19777 to 20381 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:37,829 DEBUG Processing 16/740 atomic regions from SNP 4500 to 5100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,976 DEBUG Processing 476/846 atomic regions from SNP 142538 to 143138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,091 DEBUG Processing 67/67 atomic regions from SNP 20081 to 20685 for chr7 (subchromosome 1 of 3). 2025-01-31 09:51:38,100 DEBUG Processing 17/740 atomic regions from SNP 4800 to 5400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,229 DEBUG Unique SNPs positions in subchromosome 1: 20686 2025-01-31 09:51:38,254 DEBUG Processing 477/846 atomic regions from SNP 142838 to 143438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,303 DEBUG Subchromosome time: 19.2591150701046, subchromosome SNPs: 20686 2025-01-31 09:51:38,336 DEBUG Processing 18/740 atomic regions from SNP 5100 to 5700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,361 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:38,541 DEBUG Processing 478/846 atomic regions from SNP 143138 to 143738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,569 DEBUG Processing 19/740 atomic regions from SNP 5400 to 6000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,805 DEBUG Processing 20/740 atomic regions from SNP 5700 to 6300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,822 DEBUG Processing 479/846 atomic regions from SNP 143438 to 144038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,042 DEBUG Processing 21/740 atomic regions from SNP 6000 to 6600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,089 DEBUG Processing 480/846 atomic regions from SNP 143738 to 144338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,282 DEBUG Processing 22/740 atomic regions from SNP 6300 to 6900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,348 DEBUG Processing 481/846 atomic regions from SNP 144038 to 144638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,521 DEBUG Processing 23/740 atomic regions from SNP 6600 to 7200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,619 DEBUG Processing 482/846 atomic regions from SNP 144338 to 144938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,761 DEBUG Processing 24/740 atomic regions from SNP 6900 to 7500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,883 DEBUG Processing 483/846 atomic regions from SNP 144638 to 145238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,997 DEBUG Processing 25/740 atomic regions from SNP 7200 to 7800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,150 DEBUG Processing 484/846 atomic regions from SNP 144938 to 145538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,245 DEBUG Processing 26/740 atomic regions from SNP 7500 to 8100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,424 DEBUG Processing 485/846 atomic regions from SNP 145238 to 145838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,508 DEBUG Processing 27/740 atomic regions from SNP 7800 to 8400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,712 DEBUG Processing 486/846 atomic regions from SNP 145538 to 146138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,753 DEBUG Processing 28/740 atomic regions from SNP 8100 to 8700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,989 DEBUG Processing 29/740 atomic regions from SNP 8400 to 9000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,989 DEBUG Processing 487/846 atomic regions from SNP 145838 to 146438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,234 DEBUG Processing 30/740 atomic regions from SNP 8700 to 9300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,273 DEBUG Processing 488/846 atomic regions from SNP 146138 to 146738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,481 DEBUG Processing 31/740 atomic regions from SNP 9000 to 9600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,552 DEBUG Processing 489/846 atomic regions from SNP 146438 to 147038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,652 DEBUG Segmenting atomic regions: 2025-01-31 09:51:41,719 DEBUG Processing 32/740 atomic regions from SNP 9300 to 9900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,753 DEBUG Processing 1/725 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,828 DEBUG Processing 490/846 atomic regions from SNP 146738 to 147338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,956 DEBUG Processing 33/740 atomic regions from SNP 9600 to 10200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,987 DEBUG Processing 2/725 atomic regions from SNP 301 to 901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,111 DEBUG Processing 491/846 atomic regions from SNP 147038 to 147638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,195 DEBUG Processing 34/740 atomic regions from SNP 9900 to 10500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,238 DEBUG Processing 3/725 atomic regions from SNP 601 to 1201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,397 DEBUG Processing 492/846 atomic regions from SNP 147338 to 147938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,430 DEBUG Processing 35/740 atomic regions from SNP 10200 to 10800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,505 DEBUG Processing 4/725 atomic regions from SNP 901 to 1501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,665 DEBUG Processing 36/740 atomic regions from SNP 10500 to 11100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,681 DEBUG Processing 493/846 atomic regions from SNP 147638 to 148238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,740 DEBUG Processing 5/725 atomic regions from SNP 1201 to 1801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,905 DEBUG Processing 37/740 atomic regions from SNP 10800 to 11400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,952 DEBUG Processing 494/846 atomic regions from SNP 147938 to 148538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,975 DEBUG Processing 6/725 atomic regions from SNP 1501 to 2101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,148 DEBUG Processing 38/740 atomic regions from SNP 11100 to 11700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,215 DEBUG Processing 495/846 atomic regions from SNP 148238 to 148838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,227 DEBUG Processing 7/725 atomic regions from SNP 1801 to 2401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,380 DEBUG Processing 39/740 atomic regions from SNP 11400 to 12000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,489 DEBUG Processing 8/725 atomic regions from SNP 2101 to 2701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,502 DEBUG Processing 496/846 atomic regions from SNP 148538 to 149138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,615 DEBUG Processing 40/740 atomic regions from SNP 11700 to 12300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,723 DEBUG Processing 9/725 atomic regions from SNP 2401 to 3001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,774 DEBUG Processing 497/846 atomic regions from SNP 148838 to 149438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,852 DEBUG Processing 41/740 atomic regions from SNP 12000 to 12600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,957 DEBUG Processing 10/725 atomic regions from SNP 2701 to 3301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,049 DEBUG Processing 498/846 atomic regions from SNP 149138 to 149738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,092 DEBUG Processing 42/740 atomic regions from SNP 12300 to 12900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,188 DEBUG Processing 11/725 atomic regions from SNP 3001 to 3601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,297 DEBUG Processing 499/846 atomic regions from SNP 149438 to 150038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,321 DEBUG Processing 43/740 atomic regions from SNP 12600 to 13200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,411 DEBUG Processing 12/725 atomic regions from SNP 3301 to 3901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,545 DEBUG Processing 500/846 atomic regions from SNP 149738 to 150338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,560 DEBUG Processing 44/740 atomic regions from SNP 12900 to 13500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,635 DEBUG Processing 13/725 atomic regions from SNP 3601 to 4201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,801 DEBUG Processing 45/740 atomic regions from SNP 13200 to 13800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,810 DEBUG Processing 501/846 atomic regions from SNP 150038 to 150638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,868 DEBUG Processing 14/725 atomic regions from SNP 3901 to 4501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,050 DEBUG Processing 46/740 atomic regions from SNP 13500 to 14100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,097 DEBUG Processing 502/846 atomic regions from SNP 150338 to 150938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,117 DEBUG Processing 15/725 atomic regions from SNP 4201 to 4801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,299 DEBUG Processing 47/740 atomic regions from SNP 13800 to 14400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,354 DEBUG Processing 16/725 atomic regions from SNP 4501 to 5101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,387 DEBUG Processing 503/846 atomic regions from SNP 150638 to 151238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,543 DEBUG Processing 48/740 atomic regions from SNP 14100 to 14700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,586 DEBUG Processing 17/725 atomic regions from SNP 4801 to 5401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,683 DEBUG Processing 504/846 atomic regions from SNP 150938 to 151538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,783 DEBUG Processing 49/740 atomic regions from SNP 14400 to 15000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,818 DEBUG Processing 18/725 atomic regions from SNP 5101 to 5701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,962 DEBUG Processing 505/846 atomic regions from SNP 151238 to 151838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,028 DEBUG Processing 50/740 atomic regions from SNP 14700 to 15300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,049 DEBUG Processing 19/725 atomic regions from SNP 5401 to 6001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,245 DEBUG Processing 506/846 atomic regions from SNP 151538 to 152138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,265 DEBUG Processing 51/740 atomic regions from SNP 15000 to 15600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,275 DEBUG Processing 20/725 atomic regions from SNP 5701 to 6301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,509 DEBUG Processing 21/725 atomic regions from SNP 6001 to 6601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,511 DEBUG Processing 52/740 atomic regions from SNP 15300 to 15900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,533 DEBUG Processing 507/846 atomic regions from SNP 151838 to 152438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,745 DEBUG Processing 22/725 atomic regions from SNP 6301 to 6901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,753 DEBUG Processing 53/740 atomic regions from SNP 15600 to 16200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,807 DEBUG Processing 508/846 atomic regions from SNP 152138 to 152738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,978 DEBUG Processing 23/725 atomic regions from SNP 6601 to 7201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,995 DEBUG Processing 54/740 atomic regions from SNP 15900 to 16500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,073 DEBUG Processing 509/846 atomic regions from SNP 152438 to 153038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,205 DEBUG Processing 24/725 atomic regions from SNP 6901 to 7501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,234 DEBUG Processing 55/740 atomic regions from SNP 16200 to 16800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,344 DEBUG Processing 510/846 atomic regions from SNP 152738 to 153338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,432 DEBUG Processing 25/725 atomic regions from SNP 7201 to 7801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,474 DEBUG Processing 56/740 atomic regions from SNP 16500 to 17100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,613 DEBUG Processing 511/846 atomic regions from SNP 153038 to 153638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,661 DEBUG Processing 26/725 atomic regions from SNP 7501 to 8101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,737 DEBUG Processing 57/740 atomic regions from SNP 16800 to 17400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,883 DEBUG Processing 512/846 atomic regions from SNP 153338 to 153938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,891 DEBUG Processing 27/725 atomic regions from SNP 7801 to 8401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,004 DEBUG Processing 58/740 atomic regions from SNP 17100 to 17700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,116 DEBUG Processing 28/725 atomic regions from SNP 8101 to 8701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,132 DEBUG Processing 513/846 atomic regions from SNP 153638 to 154238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,239 DEBUG Processing 59/740 atomic regions from SNP 17400 to 18000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,344 DEBUG Processing 29/725 atomic regions from SNP 8401 to 9001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,378 DEBUG Processing 514/846 atomic regions from SNP 153938 to 154538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,476 DEBUG Processing 60/740 atomic regions from SNP 17700 to 18300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,590 DEBUG Processing 30/725 atomic regions from SNP 8701 to 9301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,643 DEBUG Processing 515/846 atomic regions from SNP 154238 to 154838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,715 DEBUG Processing 61/740 atomic regions from SNP 18000 to 18600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,822 DEBUG Processing 31/725 atomic regions from SNP 9001 to 9601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,899 DEBUG Processing 516/846 atomic regions from SNP 154538 to 155138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,953 DEBUG Processing 62/740 atomic regions from SNP 18300 to 18900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,048 DEBUG Processing 32/725 atomic regions from SNP 9301 to 9901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,153 DEBUG Processing 517/846 atomic regions from SNP 154838 to 155438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,200 DEBUG Processing 63/740 atomic regions from SNP 18600 to 19200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,274 DEBUG Processing 33/725 atomic regions from SNP 9601 to 10201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,407 DEBUG Processing 518/846 atomic regions from SNP 155138 to 155738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,471 DEBUG Processing 64/740 atomic regions from SNP 18900 to 19500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,498 DEBUG Processing 34/725 atomic regions from SNP 9901 to 10501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,679 DEBUG Processing 519/846 atomic regions from SNP 155438 to 156038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,710 DEBUG Processing 65/740 atomic regions from SNP 19200 to 19800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,726 DEBUG Processing 35/725 atomic regions from SNP 10201 to 10801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,936 DEBUG Processing 520/846 atomic regions from SNP 155738 to 156338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,944 DEBUG Processing 66/740 atomic regions from SNP 19500 to 20100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,952 DEBUG Processing 36/725 atomic regions from SNP 10501 to 11101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,184 DEBUG Processing 67/740 atomic regions from SNP 19800 to 20400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,189 DEBUG Processing 37/725 atomic regions from SNP 10801 to 11401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,193 DEBUG Processing 521/846 atomic regions from SNP 156038 to 156638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,422 DEBUG Processing 68/740 atomic regions from SNP 20100 to 20700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,441 DEBUG Processing 38/725 atomic regions from SNP 11101 to 11701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,450 DEBUG Processing 522/846 atomic regions from SNP 156338 to 156938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,663 DEBUG Processing 69/740 atomic regions from SNP 20400 to 21000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,683 DEBUG Processing 39/725 atomic regions from SNP 11401 to 12001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,712 DEBUG Processing 523/846 atomic regions from SNP 156638 to 157238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,903 DEBUG Processing 70/740 atomic regions from SNP 20700 to 21300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,927 DEBUG Processing 40/725 atomic regions from SNP 11701 to 12301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,974 DEBUG Processing 524/846 atomic regions from SNP 156938 to 157538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,138 DEBUG Processing 71/740 atomic regions from SNP 21000 to 21600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,163 DEBUG Processing 41/725 atomic regions from SNP 12001 to 12601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,232 DEBUG Processing 525/846 atomic regions from SNP 157238 to 157838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,379 DEBUG Processing 72/740 atomic regions from SNP 21300 to 21900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,404 DEBUG Processing 42/725 atomic regions from SNP 12301 to 12901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,491 DEBUG Processing 526/846 atomic regions from SNP 157538 to 158138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,625 DEBUG Processing 73/740 atomic regions from SNP 21600 to 22200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,649 DEBUG Processing 43/725 atomic regions from SNP 12601 to 13201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,749 DEBUG Processing 527/846 atomic regions from SNP 157838 to 158438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,867 DEBUG Processing 74/740 atomic regions from SNP 21900 to 22500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,888 DEBUG Processing 44/725 atomic regions from SNP 12901 to 13501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,024 DEBUG Processing 528/846 atomic regions from SNP 158138 to 158738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,105 DEBUG Processing 75/740 atomic regions from SNP 22200 to 22800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,161 DEBUG Processing 45/725 atomic regions from SNP 13201 to 13801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,311 DEBUG Processing 529/846 atomic regions from SNP 158438 to 159038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,345 DEBUG Processing 76/740 atomic regions from SNP 22500 to 23100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,412 DEBUG Processing 46/725 atomic regions from SNP 13501 to 14101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,585 DEBUG Processing 77/740 atomic regions from SNP 22800 to 23400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,598 DEBUG Processing 530/846 atomic regions from SNP 158738 to 159338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,658 DEBUG Processing 47/725 atomic regions from SNP 13801 to 14401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,828 DEBUG Processing 78/740 atomic regions from SNP 23100 to 23700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,870 DEBUG Processing 531/846 atomic regions from SNP 159038 to 159638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,915 DEBUG Processing 48/725 atomic regions from SNP 14101 to 14701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,070 DEBUG Processing 79/740 atomic regions from SNP 23400 to 24000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,122 DEBUG Processing 532/846 atomic regions from SNP 159338 to 159938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,186 DEBUG Processing 49/725 atomic regions from SNP 14401 to 15001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,318 DEBUG Processing 80/740 atomic regions from SNP 23700 to 24300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,374 DEBUG Processing 533/846 atomic regions from SNP 159638 to 160238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,429 DEBUG Processing 50/725 atomic regions from SNP 14701 to 15301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,581 DEBUG Processing 81/740 atomic regions from SNP 24000 to 24600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,637 DEBUG Processing 534/846 atomic regions from SNP 159938 to 160538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,684 DEBUG Processing 51/725 atomic regions from SNP 15001 to 15601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,834 DEBUG Processing 82/740 atomic regions from SNP 24300 to 24900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,894 DEBUG Processing 535/846 atomic regions from SNP 160238 to 160838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,923 DEBUG Processing 52/725 atomic regions from SNP 15301 to 15901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,082 DEBUG Processing 83/740 atomic regions from SNP 24600 to 25200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,154 DEBUG Processing 536/846 atomic regions from SNP 160538 to 161138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,159 DEBUG Processing 53/725 atomic regions from SNP 15601 to 16201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,326 DEBUG Processing 84/740 atomic regions from SNP 24900 to 25500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,394 DEBUG Processing 54/725 atomic regions from SNP 15901 to 16501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,409 DEBUG Processing 537/846 atomic regions from SNP 160838 to 161438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,570 DEBUG Processing 85/740 atomic regions from SNP 25200 to 25800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,634 DEBUG Processing 55/725 atomic regions from SNP 16201 to 16801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,666 DEBUG Processing 538/846 atomic regions from SNP 161138 to 161738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,811 DEBUG Processing 86/740 atomic regions from SNP 25500 to 26100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,882 DEBUG Processing 56/725 atomic regions from SNP 16501 to 17101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,926 DEBUG Processing 539/846 atomic regions from SNP 161438 to 162038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,069 DEBUG Processing 87/740 atomic regions from SNP 25800 to 26400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,146 DEBUG Processing 57/725 atomic regions from SNP 16801 to 17401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,193 DEBUG Processing 540/846 atomic regions from SNP 161738 to 162338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,314 DEBUG Processing 88/740 atomic regions from SNP 26100 to 26700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,414 DEBUG Processing 58/725 atomic regions from SNP 17101 to 17701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,450 DEBUG Processing 541/846 atomic regions from SNP 162038 to 162638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,585 DEBUG Processing 89/740 atomic regions from SNP 26400 to 27000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,690 DEBUG Processing 59/725 atomic regions from SNP 17401 to 18001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,701 DEBUG Processing 542/846 atomic regions from SNP 162338 to 162938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,831 DEBUG Processing 90/740 atomic regions from SNP 26700 to 27300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,955 DEBUG Processing 60/725 atomic regions from SNP 17701 to 18301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,977 DEBUG Processing 543/846 atomic regions from SNP 162638 to 163238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,075 DEBUG Processing 91/740 atomic regions from SNP 27000 to 27600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,193 DEBUG Processing 61/725 atomic regions from SNP 18001 to 18601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,247 DEBUG Processing 544/846 atomic regions from SNP 162938 to 163538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,315 DEBUG Processing 92/740 atomic regions from SNP 27300 to 27900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,430 DEBUG Processing 62/725 atomic regions from SNP 18301 to 18901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,495 DEBUG Processing 545/846 atomic regions from SNP 163238 to 163838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,563 DEBUG Processing 93/740 atomic regions from SNP 27600 to 28200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,685 DEBUG Processing 63/725 atomic regions from SNP 18601 to 19201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,734 DEBUG Processing 546/846 atomic regions from SNP 163538 to 164138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,805 DEBUG Processing 94/740 atomic regions from SNP 27900 to 28500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,919 DEBUG Processing 64/725 atomic regions from SNP 18901 to 19501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,979 DEBUG Processing 547/846 atomic regions from SNP 163838 to 164438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,053 DEBUG Processing 95/740 atomic regions from SNP 28200 to 28800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,156 DEBUG Processing 65/725 atomic regions from SNP 19201 to 19801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,234 DEBUG Processing 548/846 atomic regions from SNP 164138 to 164738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,293 DEBUG Processing 96/740 atomic regions from SNP 28500 to 29100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,385 DEBUG Processing 66/725 atomic regions from SNP 19501 to 20101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,482 DEBUG Processing 549/846 atomic regions from SNP 164438 to 165038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,545 DEBUG Processing 97/740 atomic regions from SNP 28800 to 29400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,610 DEBUG Processing 67/725 atomic regions from SNP 19801 to 20401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,735 DEBUG Processing 550/846 atomic regions from SNP 164738 to 165338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,805 DEBUG Processing 98/740 atomic regions from SNP 29100 to 29700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,847 DEBUG Processing 68/725 atomic regions from SNP 20101 to 20701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,986 DEBUG Processing 551/846 atomic regions from SNP 165038 to 165638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,065 DEBUG Processing 99/740 atomic regions from SNP 29400 to 30000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,106 DEBUG Processing 69/725 atomic regions from SNP 20401 to 21001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,231 DEBUG Processing 552/846 atomic regions from SNP 165338 to 165938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,327 DEBUG Processing 100/740 atomic regions from SNP 29700 to 30300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,367 DEBUG Processing 70/725 atomic regions from SNP 20701 to 21301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,485 DEBUG Processing 553/846 atomic regions from SNP 165638 to 166238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,586 DEBUG Processing 101/740 atomic regions from SNP 30000 to 30600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,614 DEBUG Processing 71/725 atomic regions from SNP 21001 to 21601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,740 DEBUG Processing 554/846 atomic regions from SNP 165938 to 166538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,821 DEBUG Processing 102/740 atomic regions from SNP 30300 to 30900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,845 DEBUG Processing 72/725 atomic regions from SNP 21301 to 21901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,995 DEBUG Processing 555/846 atomic regions from SNP 166238 to 166838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,065 DEBUG Processing 103/740 atomic regions from SNP 30600 to 31200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,086 DEBUG Processing 73/725 atomic regions from SNP 21601 to 22201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,253 DEBUG Processing 556/846 atomic regions from SNP 166538 to 167138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,312 DEBUG Processing 104/740 atomic regions from SNP 30900 to 31500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,329 DEBUG Processing 74/725 atomic regions from SNP 21901 to 22501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,511 DEBUG Processing 557/846 atomic regions from SNP 166838 to 167438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,577 DEBUG Processing 75/725 atomic regions from SNP 22201 to 22801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,577 DEBUG Processing 105/740 atomic regions from SNP 31200 to 31800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,764 DEBUG Processing 558/846 atomic regions from SNP 167138 to 167738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,822 DEBUG Processing 76/725 atomic regions from SNP 22501 to 23101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,837 DEBUG Processing 106/740 atomic regions from SNP 31500 to 32100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,015 DEBUG Processing 559/846 atomic regions from SNP 167438 to 168038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,059 DEBUG Processing 77/725 atomic regions from SNP 22801 to 23401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,087 DEBUG Processing 107/740 atomic regions from SNP 31800 to 32400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,271 DEBUG Processing 560/846 atomic regions from SNP 167738 to 168338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,303 DEBUG Processing 78/725 atomic regions from SNP 23101 to 23701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,326 DEBUG Processing 108/740 atomic regions from SNP 32100 to 32700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,520 DEBUG Processing 561/846 atomic regions from SNP 168038 to 168638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,537 DEBUG Processing 79/725 atomic regions from SNP 23401 to 24001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,556 DEBUG Processing 109/740 atomic regions from SNP 32400 to 33000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,774 DEBUG Processing 80/725 atomic regions from SNP 23701 to 24301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,787 DEBUG Processing 562/846 atomic regions from SNP 168338 to 168938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,790 DEBUG Processing 110/740 atomic regions from SNP 32700 to 33300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,015 DEBUG Processing 81/725 atomic regions from SNP 24001 to 24601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,018 DEBUG Processing 111/740 atomic regions from SNP 33000 to 33600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,044 DEBUG Processing 563/846 atomic regions from SNP 168638 to 169238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,249 DEBUG Processing 112/740 atomic regions from SNP 33300 to 33900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,253 DEBUG Processing 82/725 atomic regions from SNP 24301 to 24901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,297 DEBUG Processing 564/846 atomic regions from SNP 168938 to 169538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,472 DEBUG Processing 113/740 atomic regions from SNP 33600 to 34200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,478 DEBUG Processing 83/725 atomic regions from SNP 24601 to 25201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,540 DEBUG Processing 565/846 atomic regions from SNP 169238 to 169838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,702 DEBUG Processing 84/725 atomic regions from SNP 24901 to 25501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,706 DEBUG Processing 114/740 atomic regions from SNP 33900 to 34500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,785 DEBUG Processing 566/846 atomic regions from SNP 169538 to 170138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,931 DEBUG Processing 85/725 atomic regions from SNP 25201 to 25801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,948 DEBUG Processing 115/740 atomic regions from SNP 34200 to 34800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,029 DEBUG Processing 567/846 atomic regions from SNP 169838 to 170438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,170 DEBUG Processing 86/725 atomic regions from SNP 25501 to 26101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,176 DEBUG Processing 116/740 atomic regions from SNP 34500 to 35100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,273 DEBUG Processing 568/846 atomic regions from SNP 170138 to 170738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,408 DEBUG Processing 87/725 atomic regions from SNP 25801 to 26401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,409 DEBUG Processing 117/740 atomic regions from SNP 34800 to 35400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,523 DEBUG Processing 569/846 atomic regions from SNP 170438 to 171038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,639 DEBUG Processing 118/740 atomic regions from SNP 35100 to 35700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,641 DEBUG Processing 88/725 atomic regions from SNP 26101 to 26701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,770 DEBUG Processing 570/846 atomic regions from SNP 170738 to 171338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,868 DEBUG Processing 119/740 atomic regions from SNP 35400 to 36000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,869 DEBUG Processing 89/725 atomic regions from SNP 26401 to 27001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,018 DEBUG Processing 571/846 atomic regions from SNP 171038 to 171638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,097 DEBUG Processing 120/740 atomic regions from SNP 35700 to 36300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,099 DEBUG Processing 90/725 atomic regions from SNP 26701 to 27301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,267 DEBUG Processing 572/846 atomic regions from SNP 171338 to 171938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,330 DEBUG Processing 121/740 atomic regions from SNP 36000 to 36600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,336 DEBUG Processing 91/725 atomic regions from SNP 27001 to 27601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,518 DEBUG Processing 573/846 atomic regions from SNP 171638 to 172238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,573 DEBUG Processing 122/740 atomic regions from SNP 36300 to 36900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,574 DEBUG Processing 92/725 atomic regions from SNP 27301 to 27901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,773 DEBUG Processing 574/846 atomic regions from SNP 171938 to 172538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,808 DEBUG Processing 93/725 atomic regions from SNP 27601 to 28201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,816 DEBUG Processing 123/740 atomic regions from SNP 36600 to 37200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,024 DEBUG Processing 575/846 atomic regions from SNP 172238 to 172838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,041 DEBUG Processing 124/740 atomic regions from SNP 36900 to 37500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,044 DEBUG Processing 94/725 atomic regions from SNP 27901 to 28501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,267 DEBUG Processing 125/740 atomic regions from SNP 37200 to 37800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,279 DEBUG Processing 576/846 atomic regions from SNP 172538 to 173138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,284 DEBUG Processing 95/725 atomic regions from SNP 28201 to 28801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,507 DEBUG Processing 126/740 atomic regions from SNP 37500 to 38100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,530 DEBUG Processing 96/725 atomic regions from SNP 28501 to 29101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,540 DEBUG Processing 577/846 atomic regions from SNP 172838 to 173438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,744 DEBUG Processing 127/740 atomic regions from SNP 37800 to 38400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,771 DEBUG Processing 97/725 atomic regions from SNP 28801 to 29401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,779 DEBUG Segmenting atomic regions: 2025-01-31 09:52:04,800 DEBUG Processing 578/846 atomic regions from SNP 173138 to 173738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,883 DEBUG Processing 1/698 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,966 DEBUG Processing 128/740 atomic regions from SNP 38100 to 38700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,004 DEBUG Processing 98/725 atomic regions from SNP 29101 to 29701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,057 DEBUG Processing 579/846 atomic regions from SNP 173438 to 174038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,113 DEBUG Processing 2/698 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,187 DEBUG Processing 129/740 atomic regions from SNP 38400 to 39000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,235 DEBUG Processing 99/725 atomic regions from SNP 29401 to 30001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,318 DEBUG Processing 580/846 atomic regions from SNP 173738 to 174338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,351 DEBUG Processing 3/698 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,417 DEBUG Processing 130/740 atomic regions from SNP 38700 to 39300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,459 DEBUG Processing 100/725 atomic regions from SNP 29701 to 30301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,571 DEBUG Processing 581/846 atomic regions from SNP 174038 to 174638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,596 DEBUG Processing 4/698 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,655 DEBUG Processing 131/740 atomic regions from SNP 39000 to 39600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,710 DEBUG Processing 101/725 atomic regions from SNP 30001 to 30601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,819 DEBUG Processing 582/846 atomic regions from SNP 174338 to 174938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,836 DEBUG Processing 5/698 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,891 DEBUG Processing 132/740 atomic regions from SNP 39300 to 39900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,948 DEBUG Processing 102/725 atomic regions from SNP 30301 to 30901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,070 DEBUG Processing 583/846 atomic regions from SNP 174638 to 175238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,100 DEBUG Processing 6/698 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,128 DEBUG Processing 133/740 atomic regions from SNP 39600 to 40200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,195 DEBUG Processing 103/725 atomic regions from SNP 30601 to 31201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,321 DEBUG Processing 584/846 atomic regions from SNP 174938 to 175538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,366 DEBUG Processing 134/740 atomic regions from SNP 39900 to 40500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,376 DEBUG Processing 7/698 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,430 DEBUG Processing 104/725 atomic regions from SNP 30901 to 31501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,564 DEBUG Processing 585/846 atomic regions from SNP 175238 to 175838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,606 DEBUG Processing 135/740 atomic regions from SNP 40200 to 40800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,641 DEBUG Processing 8/698 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,676 DEBUG Processing 105/725 atomic regions from SNP 31201 to 31801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,813 DEBUG Processing 586/846 atomic regions from SNP 175538 to 176138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,843 DEBUG Processing 136/740 atomic regions from SNP 40500 to 41100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,912 DEBUG Processing 9/698 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,924 DEBUG Processing 106/725 atomic regions from SNP 31501 to 32101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,061 DEBUG Processing 587/846 atomic regions from SNP 175838 to 176438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,081 DEBUG Processing 137/740 atomic regions from SNP 40800 to 41400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,180 DEBUG Processing 107/725 atomic regions from SNP 31801 to 32401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,190 DEBUG Processing 10/698 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,309 DEBUG Processing 588/846 atomic regions from SNP 176138 to 176738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,318 DEBUG Processing 138/740 atomic regions from SNP 41100 to 41700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,428 DEBUG Processing 108/725 atomic regions from SNP 32101 to 32701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,461 DEBUG Processing 11/698 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,548 DEBUG Processing 139/740 atomic regions from SNP 41400 to 42000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,553 DEBUG Processing 589/846 atomic regions from SNP 176438 to 177038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,652 DEBUG Processing 109/725 atomic regions from SNP 32401 to 33001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,723 DEBUG Processing 12/698 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,777 DEBUG Processing 140/740 atomic regions from SNP 41700 to 42300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,791 DEBUG Processing 590/846 atomic regions from SNP 176738 to 177338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,878 DEBUG Processing 110/725 atomic regions from SNP 32701 to 33301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,973 DEBUG Processing 13/698 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,009 DEBUG Processing 141/740 atomic regions from SNP 42000 to 42600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,031 DEBUG Processing 591/846 atomic regions from SNP 177038 to 177638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,109 DEBUG Processing 111/725 atomic regions from SNP 33001 to 33601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,235 DEBUG Processing 142/740 atomic regions from SNP 42300 to 42900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,240 DEBUG Processing 14/698 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,270 DEBUG Processing 592/846 atomic regions from SNP 177338 to 177938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,335 DEBUG Processing 112/725 atomic regions from SNP 33301 to 33901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,462 DEBUG Processing 143/740 atomic regions from SNP 42600 to 43200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,502 DEBUG Processing 15/698 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,520 DEBUG Processing 593/846 atomic regions from SNP 177638 to 178238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,573 DEBUG Processing 113/725 atomic regions from SNP 33601 to 34201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,694 DEBUG Processing 144/740 atomic regions from SNP 42900 to 43500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,739 DEBUG Processing 16/698 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,784 DEBUG Processing 594/846 atomic regions from SNP 177938 to 178538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,819 DEBUG Processing 114/725 atomic regions from SNP 33901 to 34501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,931 DEBUG Processing 145/740 atomic regions from SNP 43200 to 43800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,975 DEBUG Processing 17/698 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,033 DEBUG Processing 595/846 atomic regions from SNP 178238 to 178838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,045 DEBUG Processing 115/725 atomic regions from SNP 34201 to 34801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,174 DEBUG Processing 146/740 atomic regions from SNP 43500 to 44100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,217 DEBUG Processing 18/698 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,286 DEBUG Processing 116/725 atomic regions from SNP 34501 to 35101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,286 DEBUG Processing 596/846 atomic regions from SNP 178538 to 179138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,417 DEBUG Processing 147/740 atomic regions from SNP 43800 to 44400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,460 DEBUG Processing 19/698 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,529 DEBUG Processing 117/725 atomic regions from SNP 34801 to 35401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,546 DEBUG Processing 597/846 atomic regions from SNP 178838 to 179438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,654 DEBUG Processing 148/740 atomic regions from SNP 44100 to 44700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,706 DEBUG Processing 20/698 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,770 DEBUG Processing 118/725 atomic regions from SNP 35101 to 35701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,805 DEBUG Processing 598/846 atomic regions from SNP 179138 to 179738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,896 DEBUG Processing 149/740 atomic regions from SNP 44400 to 45000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,955 DEBUG Processing 21/698 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,015 DEBUG Processing 119/725 atomic regions from SNP 35401 to 36001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,064 DEBUG Processing 599/846 atomic regions from SNP 179438 to 180038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,138 DEBUG Processing 150/740 atomic regions from SNP 44700 to 45300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,232 DEBUG Processing 22/698 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,251 DEBUG Processing 120/725 atomic regions from SNP 35701 to 36301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,324 DEBUG Processing 600/846 atomic regions from SNP 179738 to 180338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,378 DEBUG Processing 151/740 atomic regions from SNP 45000 to 45600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,486 DEBUG Processing 121/725 atomic regions from SNP 36001 to 36601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,512 DEBUG Processing 23/698 atomic regions from SNP 6622 to 7222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,586 DEBUG Processing 601/846 atomic regions from SNP 180038 to 180638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,612 DEBUG Processing 152/740 atomic regions from SNP 45300 to 45900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,744 DEBUG Processing 122/725 atomic regions from SNP 36301 to 36901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,774 DEBUG Processing 24/698 atomic regions from SNP 6922 to 7522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,836 DEBUG Processing 602/846 atomic regions from SNP 180338 to 180938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,842 DEBUG Processing 153/740 atomic regions from SNP 45600 to 46200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,001 DEBUG Processing 123/725 atomic regions from SNP 36601 to 37201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,041 DEBUG Processing 25/698 atomic regions from SNP 7222 to 7822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,073 DEBUG Processing 154/740 atomic regions from SNP 45900 to 46500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,085 DEBUG Processing 603/846 atomic regions from SNP 180638 to 181238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,251 DEBUG Processing 124/725 atomic regions from SNP 36901 to 37501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,278 DEBUG Processing 26/698 atomic regions from SNP 7522 to 8122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,304 DEBUG Processing 155/740 atomic regions from SNP 46200 to 46800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,330 DEBUG Processing 604/846 atomic regions from SNP 180938 to 181538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,499 DEBUG Processing 125/725 atomic regions from SNP 37201 to 37801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,521 DEBUG Processing 27/698 atomic regions from SNP 7822 to 8422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,535 DEBUG Processing 156/740 atomic regions from SNP 46500 to 47100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,578 DEBUG Processing 605/846 atomic regions from SNP 181238 to 181838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,741 DEBUG Processing 126/725 atomic regions from SNP 37501 to 38101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,766 DEBUG Processing 157/740 atomic regions from SNP 46800 to 47400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,783 DEBUG Processing 28/698 atomic regions from SNP 8122 to 8722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,828 DEBUG Processing 606/846 atomic regions from SNP 181538 to 182138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,957 DEBUG Processing 127/725 atomic regions from SNP 37801 to 38401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,999 DEBUG Processing 158/740 atomic regions from SNP 47100 to 47700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,042 DEBUG Processing 29/698 atomic regions from SNP 8422 to 9022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,079 DEBUG Processing 607/846 atomic regions from SNP 181838 to 182438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,173 DEBUG Processing 128/725 atomic regions from SNP 38101 to 38701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,230 DEBUG Processing 159/740 atomic regions from SNP 47400 to 48000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,304 DEBUG Processing 30/698 atomic regions from SNP 8722 to 9322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,327 DEBUG Processing 608/846 atomic regions from SNP 182138 to 182738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,402 DEBUG Processing 129/725 atomic regions from SNP 38401 to 39001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,459 DEBUG Processing 160/740 atomic regions from SNP 47700 to 48300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,568 DEBUG Processing 31/698 atomic regions from SNP 9022 to 9622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,582 DEBUG Processing 609/846 atomic regions from SNP 182438 to 183038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,639 DEBUG Processing 130/725 atomic regions from SNP 38701 to 39301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,693 DEBUG Processing 161/740 atomic regions from SNP 48000 to 48600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,833 DEBUG Processing 610/846 atomic regions from SNP 182738 to 183338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,837 DEBUG Processing 32/698 atomic regions from SNP 9322 to 9922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,905 DEBUG Processing 131/725 atomic regions from SNP 39001 to 39601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,921 DEBUG Processing 162/740 atomic regions from SNP 48300 to 48900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,088 DEBUG Processing 611/846 atomic regions from SNP 183038 to 183638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,116 DEBUG Processing 33/698 atomic regions from SNP 9622 to 10222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,159 DEBUG Processing 163/740 atomic regions from SNP 48600 to 49200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,181 DEBUG Processing 132/725 atomic regions from SNP 39301 to 39901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,338 DEBUG Processing 612/846 atomic regions from SNP 183338 to 183938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,392 DEBUG Processing 34/698 atomic regions from SNP 9922 to 10522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,405 DEBUG Processing 164/740 atomic regions from SNP 48900 to 49500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,446 DEBUG Processing 133/725 atomic regions from SNP 39601 to 40201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,589 DEBUG Processing 613/846 atomic regions from SNP 183638 to 184238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,648 DEBUG Processing 165/740 atomic regions from SNP 49200 to 49800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,679 DEBUG Processing 35/698 atomic regions from SNP 10222 to 10822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,681 DEBUG Processing 134/725 atomic regions from SNP 39901 to 40501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,846 DEBUG Processing 614/846 atomic regions from SNP 183938 to 184538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,893 DEBUG Processing 166/740 atomic regions from SNP 49500 to 50100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,917 DEBUG Processing 135/725 atomic regions from SNP 40201 to 40801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,939 DEBUG Processing 36/698 atomic regions from SNP 10522 to 11122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,099 DEBUG Processing 615/846 atomic regions from SNP 184238 to 184838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,134 DEBUG Processing 167/740 atomic regions from SNP 49800 to 50400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,151 DEBUG Processing 136/725 atomic regions from SNP 40501 to 41101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,182 DEBUG Processing 37/698 atomic regions from SNP 10822 to 11422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,352 DEBUG Processing 616/846 atomic regions from SNP 184538 to 185138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,376 DEBUG Processing 168/740 atomic regions from SNP 50100 to 50700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,388 DEBUG Processing 137/725 atomic regions from SNP 40801 to 41401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,442 DEBUG Processing 38/698 atomic regions from SNP 11122 to 11722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,603 DEBUG Processing 617/846 atomic regions from SNP 184838 to 185438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,612 DEBUG Processing 169/740 atomic regions from SNP 50400 to 51000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,622 DEBUG Processing 138/725 atomic regions from SNP 41101 to 41701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,703 DEBUG Processing 39/698 atomic regions from SNP 11422 to 12022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,842 DEBUG Processing 170/740 atomic regions from SNP 50700 to 51300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,853 DEBUG Processing 618/846 atomic regions from SNP 185138 to 185738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,862 DEBUG Processing 139/725 atomic regions from SNP 41401 to 42001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,976 DEBUG Processing 40/698 atomic regions from SNP 11722 to 12322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,072 DEBUG Processing 171/740 atomic regions from SNP 51000 to 51600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,097 DEBUG Processing 140/725 atomic regions from SNP 41701 to 42301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,105 DEBUG Processing 619/846 atomic regions from SNP 185438 to 186038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,240 DEBUG Processing 41/698 atomic regions from SNP 12022 to 12622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,300 DEBUG Processing 172/740 atomic regions from SNP 51300 to 51900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,326 DEBUG Processing 141/725 atomic regions from SNP 42001 to 42601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,354 DEBUG Processing 620/846 atomic regions from SNP 185738 to 186338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,505 DEBUG Processing 42/698 atomic regions from SNP 12322 to 12922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,536 DEBUG Processing 173/740 atomic regions from SNP 51600 to 52200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,556 DEBUG Processing 142/725 atomic regions from SNP 42301 to 42901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,603 DEBUG Processing 621/846 atomic regions from SNP 186038 to 186638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,768 DEBUG Processing 174/740 atomic regions from SNP 51900 to 52500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,774 DEBUG Processing 43/698 atomic regions from SNP 12622 to 13222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,784 DEBUG Processing 143/725 atomic regions from SNP 42601 to 43201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,849 DEBUG Processing 622/846 atomic regions from SNP 186338 to 186938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,003 DEBUG Processing 175/740 atomic regions from SNP 52200 to 52800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,015 DEBUG Processing 144/725 atomic regions from SNP 42901 to 43501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,038 DEBUG Processing 44/698 atomic regions from SNP 12922 to 13522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,097 DEBUG Processing 623/846 atomic regions from SNP 186638 to 187238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,238 DEBUG Processing 176/740 atomic regions from SNP 52500 to 53100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,241 DEBUG Processing 145/725 atomic regions from SNP 43201 to 43801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,295 DEBUG Processing 45/698 atomic regions from SNP 13222 to 13822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,347 DEBUG Processing 624/846 atomic regions from SNP 186938 to 187538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,467 DEBUG Processing 146/725 atomic regions from SNP 43501 to 44101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,468 DEBUG Processing 177/740 atomic regions from SNP 52800 to 53400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,522 DEBUG Processing 46/698 atomic regions from SNP 13522 to 14122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,595 DEBUG Processing 625/846 atomic regions from SNP 187238 to 187838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,695 DEBUG Processing 178/740 atomic regions from SNP 53100 to 53700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,695 DEBUG Processing 147/725 atomic regions from SNP 43801 to 44401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,753 DEBUG Processing 47/698 atomic regions from SNP 13822 to 14422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,838 DEBUG Processing 626/846 atomic regions from SNP 187538 to 188138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,923 DEBUG Processing 148/725 atomic regions from SNP 44101 to 44701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,928 DEBUG Processing 179/740 atomic regions from SNP 53400 to 54000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,988 DEBUG Processing 48/698 atomic regions from SNP 14122 to 14722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,082 DEBUG Processing 627/846 atomic regions from SNP 187838 to 188438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,153 DEBUG Processing 149/725 atomic regions from SNP 44401 to 45001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,165 DEBUG Processing 180/740 atomic regions from SNP 53700 to 54300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,227 DEBUG Processing 49/698 atomic regions from SNP 14422 to 15022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,321 DEBUG Processing 628/846 atomic regions from SNP 188138 to 188738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,380 DEBUG Processing 150/725 atomic regions from SNP 44701 to 45301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,400 DEBUG Processing 181/740 atomic regions from SNP 54000 to 54600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,465 DEBUG Processing 50/698 atomic regions from SNP 14722 to 15322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,575 DEBUG Processing 629/846 atomic regions from SNP 188438 to 189038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,616 DEBUG Processing 151/725 atomic regions from SNP 45001 to 45601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,628 DEBUG Processing 182/740 atomic regions from SNP 54300 to 54900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,702 DEBUG Processing 51/698 atomic regions from SNP 15022 to 15622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,836 DEBUG Processing 630/846 atomic regions from SNP 188738 to 189338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,852 DEBUG Processing 183/740 atomic regions from SNP 54600 to 55200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,856 DEBUG Processing 152/725 atomic regions from SNP 45301 to 45901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,937 DEBUG Processing 52/698 atomic regions from SNP 15322 to 15922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,076 DEBUG Processing 184/740 atomic regions from SNP 54900 to 55500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,085 DEBUG Processing 153/725 atomic regions from SNP 45601 to 46201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,086 DEBUG Processing 631/846 atomic regions from SNP 189038 to 189638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,172 DEBUG Processing 53/698 atomic regions from SNP 15622 to 16222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,300 DEBUG Processing 185/740 atomic regions from SNP 55200 to 55800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,314 DEBUG Processing 154/725 atomic regions from SNP 45901 to 46501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,332 DEBUG Processing 632/846 atomic regions from SNP 189338 to 189938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,433 DEBUG Processing 54/698 atomic regions from SNP 15922 to 16522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,529 DEBUG Processing 186/740 atomic regions from SNP 55500 to 56100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,544 DEBUG Processing 155/725 atomic regions from SNP 46201 to 46801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,587 DEBUG Processing 633/846 atomic regions from SNP 189638 to 190238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,700 DEBUG Processing 55/698 atomic regions from SNP 16222 to 16822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,760 DEBUG Processing 187/740 atomic regions from SNP 55800 to 56400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,768 DEBUG Processing 156/725 atomic regions from SNP 46501 to 47101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,869 DEBUG Processing 634/846 atomic regions from SNP 189938 to 190538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,937 DEBUG Processing 56/698 atomic regions from SNP 16522 to 17122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,992 DEBUG Processing 188/740 atomic regions from SNP 56100 to 56700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,992 DEBUG Processing 157/725 atomic regions from SNP 46801 to 47401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,162 DEBUG Processing 635/846 atomic regions from SNP 190238 to 190838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,173 DEBUG Processing 57/698 atomic regions from SNP 16822 to 17422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,221 DEBUG Processing 158/725 atomic regions from SNP 47101 to 47701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,230 DEBUG Processing 189/740 atomic regions from SNP 56400 to 57000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,410 DEBUG Processing 58/698 atomic regions from SNP 17122 to 17722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,447 DEBUG Processing 636/846 atomic regions from SNP 190538 to 191138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,455 DEBUG Processing 159/725 atomic regions from SNP 47401 to 48001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,469 DEBUG Processing 190/740 atomic regions from SNP 56700 to 57300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,649 DEBUG Processing 59/698 atomic regions from SNP 17422 to 18022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,693 DEBUG Processing 160/725 atomic regions from SNP 47701 to 48301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,713 DEBUG Processing 191/740 atomic regions from SNP 57000 to 57600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,738 DEBUG Processing 637/846 atomic regions from SNP 190838 to 191438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,883 DEBUG Processing 60/698 atomic regions from SNP 17722 to 18322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,933 DEBUG Processing 161/725 atomic regions from SNP 48001 to 48601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,954 DEBUG Processing 192/740 atomic regions from SNP 57300 to 57900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,026 DEBUG Processing 638/846 atomic regions from SNP 191138 to 191738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,134 DEBUG Processing 61/698 atomic regions from SNP 18022 to 18622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,161 DEBUG Processing 162/725 atomic regions from SNP 48301 to 48901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,189 DEBUG Processing 193/740 atomic regions from SNP 57600 to 58200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,312 DEBUG Processing 639/846 atomic regions from SNP 191438 to 192038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,396 DEBUG Processing 163/725 atomic regions from SNP 48601 to 49201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,398 DEBUG Processing 62/698 atomic regions from SNP 18322 to 18922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,426 DEBUG Processing 194/740 atomic regions from SNP 57900 to 58500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,591 DEBUG Processing 640/846 atomic regions from SNP 191738 to 192338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,630 DEBUG Processing 164/725 atomic regions from SNP 48901 to 49501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,658 DEBUG Processing 195/740 atomic regions from SNP 58200 to 58800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,659 DEBUG Processing 63/698 atomic regions from SNP 18622 to 19222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,853 DEBUG Processing 641/846 atomic regions from SNP 192038 to 192638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,868 DEBUG Processing 165/725 atomic regions from SNP 49201 to 49801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,903 DEBUG Processing 196/740 atomic regions from SNP 58500 to 59100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,913 DEBUG Processing 64/698 atomic regions from SNP 18922 to 19522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,110 DEBUG Processing 166/725 atomic regions from SNP 49501 to 50101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,111 DEBUG Processing 642/846 atomic regions from SNP 192338 to 192938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,139 DEBUG Processing 197/740 atomic regions from SNP 58800 to 59400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,155 DEBUG Processing 65/698 atomic regions from SNP 19222 to 19822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,354 DEBUG Processing 167/725 atomic regions from SNP 49801 to 50401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,377 DEBUG Processing 198/740 atomic regions from SNP 59100 to 59700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,383 DEBUG Processing 643/846 atomic regions from SNP 192638 to 193238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,399 DEBUG Processing 66/698 atomic regions from SNP 19522 to 20122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,621 DEBUG Processing 168/725 atomic regions from SNP 50101 to 50701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,625 DEBUG Processing 199/740 atomic regions from SNP 59400 to 60000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,649 DEBUG Processing 67/698 atomic regions from SNP 19822 to 20422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,671 DEBUG Processing 644/846 atomic regions from SNP 192938 to 193538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,854 DEBUG Processing 200/740 atomic regions from SNP 59700 to 60300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,883 DEBUG Processing 68/698 atomic regions from SNP 20122 to 20722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,885 DEBUG Processing 169/725 atomic regions from SNP 50401 to 51001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,940 DEBUG Processing 645/846 atomic regions from SNP 193238 to 193838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,084 DEBUG Processing 201/740 atomic regions from SNP 60000 to 60600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,119 DEBUG Processing 69/698 atomic regions from SNP 20422 to 21022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,143 DEBUG Processing 170/725 atomic regions from SNP 50701 to 51301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,218 DEBUG Processing 646/846 atomic regions from SNP 193538 to 194138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,305 DEBUG Processing 202/740 atomic regions from SNP 60300 to 60900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,348 DEBUG Processing 70/698 atomic regions from SNP 20722 to 21322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,407 DEBUG Processing 171/725 atomic regions from SNP 51001 to 51601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,473 DEBUG Processing 647/846 atomic regions from SNP 193838 to 194438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,531 DEBUG Processing 203/740 atomic regions from SNP 60600 to 61200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,579 DEBUG Processing 71/698 atomic regions from SNP 21022 to 21622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,654 DEBUG Processing 172/725 atomic regions from SNP 51301 to 51901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,724 DEBUG Processing 648/846 atomic regions from SNP 194138 to 194738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,759 DEBUG Processing 204/740 atomic regions from SNP 60900 to 61500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,812 DEBUG Processing 72/698 atomic regions from SNP 21322 to 21922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,885 DEBUG Processing 173/725 atomic regions from SNP 51601 to 52201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,973 DEBUG Processing 649/846 atomic regions from SNP 194438 to 195038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,983 DEBUG Processing 205/740 atomic regions from SNP 61200 to 61800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,041 DEBUG Processing 73/698 atomic regions from SNP 21622 to 22222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,118 DEBUG Processing 174/725 atomic regions from SNP 51901 to 52501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,213 DEBUG Processing 206/740 atomic regions from SNP 61500 to 62100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,248 DEBUG Processing 650/846 atomic regions from SNP 194738 to 195338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,274 DEBUG Processing 74/698 atomic regions from SNP 21922 to 22522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,351 DEBUG Processing 175/725 atomic regions from SNP 52201 to 52801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,447 DEBUG Processing 207/740 atomic regions from SNP 61800 to 62400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,509 DEBUG Processing 75/698 atomic regions from SNP 22222 to 22822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,537 DEBUG Processing 651/846 atomic regions from SNP 195038 to 195638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,582 DEBUG Processing 176/725 atomic regions from SNP 52501 to 53101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,681 DEBUG Processing 208/740 atomic regions from SNP 62100 to 62700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,740 DEBUG Processing 76/698 atomic regions from SNP 22522 to 23122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,823 DEBUG Processing 177/725 atomic regions from SNP 52801 to 53401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,831 DEBUG Processing 652/846 atomic regions from SNP 195338 to 195938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,913 DEBUG Processing 209/740 atomic regions from SNP 62400 to 63000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,982 DEBUG Processing 77/698 atomic regions from SNP 22822 to 23422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,089 DEBUG Processing 178/725 atomic regions from SNP 53101 to 53701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,148 DEBUG Processing 653/846 atomic regions from SNP 195638 to 196238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,169 DEBUG Processing 210/740 atomic regions from SNP 62700 to 63300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,237 DEBUG Processing 78/698 atomic regions from SNP 23122 to 23722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,327 DEBUG Processing 179/725 atomic regions from SNP 53401 to 54001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,405 DEBUG Processing 211/740 atomic regions from SNP 63000 to 63600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,418 DEBUG Processing 654/846 atomic regions from SNP 195938 to 196538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,497 DEBUG Processing 79/698 atomic regions from SNP 23422 to 24022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,564 DEBUG Processing 180/725 atomic regions from SNP 53701 to 54301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,646 DEBUG Processing 212/740 atomic regions from SNP 63300 to 63900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,686 DEBUG Processing 655/846 atomic regions from SNP 196238 to 196838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,729 DEBUG Processing 80/698 atomic regions from SNP 23722 to 24322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,800 DEBUG Processing 181/725 atomic regions from SNP 54001 to 54601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,878 DEBUG Processing 213/740 atomic regions from SNP 63600 to 64200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,936 DEBUG Processing 656/846 atomic regions from SNP 196538 to 197138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,962 DEBUG Processing 81/698 atomic regions from SNP 24022 to 24622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,036 DEBUG Processing 182/725 atomic regions from SNP 54301 to 54901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,127 DEBUG Processing 214/740 atomic regions from SNP 63900 to 64500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,189 DEBUG Processing 657/846 atomic regions from SNP 196838 to 197438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,197 DEBUG Processing 82/698 atomic regions from SNP 24322 to 24922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,277 DEBUG Processing 183/725 atomic regions from SNP 54601 to 55201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,397 DEBUG Processing 215/740 atomic regions from SNP 64200 to 64800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,429 DEBUG Processing 83/698 atomic regions from SNP 24622 to 25222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,446 DEBUG Processing 658/846 atomic regions from SNP 197138 to 197738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,526 DEBUG Processing 184/725 atomic regions from SNP 54901 to 55501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,663 DEBUG Processing 216/740 atomic regions from SNP 64500 to 65100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,668 DEBUG Processing 84/698 atomic regions from SNP 24922 to 25522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,711 DEBUG Processing 659/846 atomic regions from SNP 197438 to 198038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,793 DEBUG Processing 185/725 atomic regions from SNP 55201 to 55801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,892 DEBUG Processing 217/740 atomic regions from SNP 64800 to 65400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,901 DEBUG Processing 85/698 atomic regions from SNP 25222 to 25822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,961 DEBUG Processing 660/846 atomic regions from SNP 197738 to 198338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,036 DEBUG Processing 186/725 atomic regions from SNP 55501 to 56101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,124 DEBUG Processing 218/740 atomic regions from SNP 65100 to 65700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,135 DEBUG Processing 86/698 atomic regions from SNP 25522 to 26122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,216 DEBUG Processing 661/846 atomic regions from SNP 198038 to 198638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,284 DEBUG Processing 187/725 atomic regions from SNP 55801 to 56401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,368 DEBUG Processing 219/740 atomic regions from SNP 65400 to 66000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,368 DEBUG Processing 87/698 atomic regions from SNP 25822 to 26422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,476 DEBUG Processing 662/846 atomic regions from SNP 198338 to 198938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,532 DEBUG Processing 188/725 atomic regions from SNP 56101 to 56701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,604 DEBUG Processing 88/698 atomic regions from SNP 26122 to 26722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,607 DEBUG Processing 220/740 atomic regions from SNP 65700 to 66300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,751 DEBUG Processing 663/846 atomic regions from SNP 198638 to 199238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,778 DEBUG Processing 189/725 atomic regions from SNP 56401 to 57001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,840 DEBUG Processing 89/698 atomic regions from SNP 26422 to 27022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,844 DEBUG Processing 221/740 atomic regions from SNP 66000 to 66600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,024 DEBUG Processing 190/725 atomic regions from SNP 56701 to 57301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,043 DEBUG Processing 664/846 atomic regions from SNP 198938 to 199538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,075 DEBUG Processing 90/698 atomic regions from SNP 26722 to 27322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,085 DEBUG Processing 222/740 atomic regions from SNP 66300 to 66900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,265 DEBUG Processing 191/725 atomic regions from SNP 57001 to 57601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,308 DEBUG Processing 91/698 atomic regions from SNP 27022 to 27622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,318 DEBUG Processing 665/846 atomic regions from SNP 199238 to 199838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,342 DEBUG Processing 223/740 atomic regions from SNP 66600 to 67200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,498 DEBUG Processing 192/725 atomic regions from SNP 57301 to 57901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,542 DEBUG Processing 92/698 atomic regions from SNP 27322 to 27922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,580 DEBUG Processing 224/740 atomic regions from SNP 66900 to 67500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,593 DEBUG Processing 666/846 atomic regions from SNP 199538 to 200138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,735 DEBUG Processing 193/725 atomic regions from SNP 57601 to 58201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,776 DEBUG Processing 93/698 atomic regions from SNP 27622 to 28222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,834 DEBUG Processing 225/740 atomic regions from SNP 67200 to 67800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,863 DEBUG Processing 667/846 atomic regions from SNP 199838 to 200438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,978 DEBUG Processing 194/725 atomic regions from SNP 57901 to 58501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,001 DEBUG Processing 94/698 atomic regions from SNP 27922 to 28522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,083 DEBUG Processing 226/740 atomic regions from SNP 67500 to 68100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,117 DEBUG Processing 668/846 atomic regions from SNP 200138 to 200738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,212 DEBUG Processing 195/725 atomic regions from SNP 58201 to 58801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,229 DEBUG Processing 95/698 atomic regions from SNP 28222 to 28822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,335 DEBUG Processing 227/740 atomic regions from SNP 67800 to 68400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,365 DEBUG Processing 669/846 atomic regions from SNP 200438 to 201038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,452 DEBUG Processing 196/725 atomic regions from SNP 58501 to 59101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,467 DEBUG Processing 96/698 atomic regions from SNP 28522 to 29122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,597 DEBUG Processing 228/740 atomic regions from SNP 68100 to 68700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,610 DEBUG Processing 670/846 atomic regions from SNP 200738 to 201338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,690 DEBUG Processing 197/725 atomic regions from SNP 58801 to 59401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,705 DEBUG Processing 97/698 atomic regions from SNP 28822 to 29422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,864 DEBUG Processing 229/740 atomic regions from SNP 68400 to 69000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,869 DEBUG Processing 671/846 atomic regions from SNP 201038 to 201638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,938 DEBUG Processing 198/725 atomic regions from SNP 59101 to 59701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,946 DEBUG Processing 98/698 atomic regions from SNP 29122 to 29722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,139 DEBUG Processing 230/740 atomic regions from SNP 68700 to 69300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,147 DEBUG Processing 672/846 atomic regions from SNP 201338 to 201938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,183 DEBUG Processing 199/725 atomic regions from SNP 59401 to 60001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,188 DEBUG Processing 99/698 atomic regions from SNP 29422 to 30022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,388 DEBUG Processing 231/740 atomic regions from SNP 69000 to 69600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,429 DEBUG Processing 100/698 atomic regions from SNP 29722 to 30322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,434 DEBUG Processing 200/725 atomic regions from SNP 59701 to 60301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,448 DEBUG Processing 673/846 atomic regions from SNP 201638 to 202238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,620 DEBUG Processing 232/740 atomic regions from SNP 69300 to 69900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,668 DEBUG Processing 101/698 atomic regions from SNP 30022 to 30622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,690 DEBUG Processing 201/725 atomic regions from SNP 60001 to 60601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,743 DEBUG Processing 674/846 atomic regions from SNP 201938 to 202538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,853 DEBUG Processing 233/740 atomic regions from SNP 69600 to 70200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,909 DEBUG Processing 102/698 atomic regions from SNP 30322 to 30922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,934 DEBUG Processing 202/725 atomic regions from SNP 60301 to 60901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,000 DEBUG Processing 675/846 atomic regions from SNP 202238 to 202838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,084 DEBUG Processing 234/740 atomic regions from SNP 69900 to 70500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,148 DEBUG Processing 103/698 atomic regions from SNP 30622 to 31222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,183 DEBUG Processing 203/725 atomic regions from SNP 60601 to 61201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,269 DEBUG Processing 676/846 atomic regions from SNP 202538 to 203138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,337 DEBUG Processing 235/740 atomic regions from SNP 70200 to 70800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,384 DEBUG Processing 104/698 atomic regions from SNP 30922 to 31522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,425 DEBUG Processing 204/725 atomic regions from SNP 60901 to 61501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,554 DEBUG Processing 677/846 atomic regions from SNP 202838 to 203438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,608 DEBUG Processing 236/740 atomic regions from SNP 70500 to 71100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,621 DEBUG Processing 105/698 atomic regions from SNP 31222 to 31822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,665 DEBUG Processing 205/725 atomic regions from SNP 61201 to 61801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,855 DEBUG Processing 678/846 atomic regions from SNP 203138 to 203738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,861 DEBUG Processing 106/698 atomic regions from SNP 31522 to 32122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,866 DEBUG Processing 237/740 atomic regions from SNP 70800 to 71400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,906 DEBUG Processing 206/725 atomic regions from SNP 61501 to 62101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,094 DEBUG Processing 107/698 atomic regions from SNP 31822 to 32422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,118 DEBUG Processing 238/740 atomic regions from SNP 71100 to 71700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,144 DEBUG Processing 679/846 atomic regions from SNP 203438 to 204038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,148 DEBUG Processing 207/725 atomic regions from SNP 61801 to 62401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,359 DEBUG Processing 108/698 atomic regions from SNP 32122 to 32722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,362 DEBUG Processing 239/740 atomic regions from SNP 71400 to 72000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,387 DEBUG Processing 208/725 atomic regions from SNP 62101 to 62701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,423 DEBUG Processing 680/846 atomic regions from SNP 203738 to 204338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,604 DEBUG Processing 240/740 atomic regions from SNP 71700 to 72300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,627 DEBUG Processing 209/725 atomic regions from SNP 62401 to 63001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,637 DEBUG Processing 109/698 atomic regions from SNP 32422 to 33022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,714 DEBUG Processing 681/846 atomic regions from SNP 204038 to 204638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,848 DEBUG Processing 241/740 atomic regions from SNP 72000 to 72600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,865 DEBUG Processing 210/725 atomic regions from SNP 62701 to 63301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,913 DEBUG Processing 110/698 atomic regions from SNP 32722 to 33322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,005 DEBUG Processing 682/846 atomic regions from SNP 204338 to 204938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,094 DEBUG Processing 242/740 atomic regions from SNP 72300 to 72900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,104 DEBUG Processing 211/725 atomic regions from SNP 63001 to 63601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,191 DEBUG Processing 111/698 atomic regions from SNP 33022 to 33622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,296 DEBUG Processing 683/846 atomic regions from SNP 204638 to 205238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,326 DEBUG Processing 243/740 atomic regions from SNP 72600 to 73200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,338 DEBUG Processing 212/725 atomic regions from SNP 63301 to 63901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,454 DEBUG Processing 112/698 atomic regions from SNP 33322 to 33922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,565 DEBUG Processing 244/740 atomic regions from SNP 72900 to 73500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,581 DEBUG Processing 213/725 atomic regions from SNP 63601 to 64201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,592 DEBUG Processing 684/846 atomic regions from SNP 204938 to 205538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,723 DEBUG Processing 113/698 atomic regions from SNP 33622 to 34222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,829 DEBUG Processing 214/725 atomic regions from SNP 63901 to 64501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,839 DEBUG Processing 245/740 atomic regions from SNP 73200 to 73800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,894 DEBUG Processing 685/846 atomic regions from SNP 205238 to 205838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,991 DEBUG Processing 114/698 atomic regions from SNP 33922 to 34522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,064 DEBUG Processing 215/725 atomic regions from SNP 64201 to 64801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,093 DEBUG Processing 246/740 atomic regions from SNP 73500 to 74100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,168 DEBUG Processing 686/846 atomic regions from SNP 205538 to 206138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,279 DEBUG Processing 115/698 atomic regions from SNP 34222 to 34822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,342 DEBUG Processing 216/725 atomic regions from SNP 64501 to 65101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,365 DEBUG Processing 247/740 atomic regions from SNP 73800 to 74400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,429 DEBUG Processing 687/846 atomic regions from SNP 205838 to 206438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,559 DEBUG Processing 116/698 atomic regions from SNP 34522 to 35122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,590 DEBUG Processing 217/725 atomic regions from SNP 64801 to 65401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,613 DEBUG Processing 248/740 atomic regions from SNP 74100 to 74700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,674 DEBUG Processing 688/846 atomic regions from SNP 206138 to 206738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,819 DEBUG Processing 218/725 atomic regions from SNP 65101 to 65701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,828 DEBUG Processing 117/698 atomic regions from SNP 34822 to 35422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,842 DEBUG Processing 249/740 atomic regions from SNP 74400 to 75000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,916 DEBUG Processing 689/846 atomic regions from SNP 206438 to 207038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,048 DEBUG Processing 219/725 atomic regions from SNP 65401 to 66001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,080 DEBUG Processing 250/740 atomic regions from SNP 74700 to 75300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,101 DEBUG Processing 118/698 atomic regions from SNP 35122 to 35722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,181 DEBUG Processing 690/846 atomic regions from SNP 206738 to 207338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,283 DEBUG Processing 220/725 atomic regions from SNP 65701 to 66301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,315 DEBUG Processing 251/740 atomic regions from SNP 75000 to 75600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,359 DEBUG Processing 119/698 atomic regions from SNP 35422 to 36022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,465 DEBUG Processing 691/846 atomic regions from SNP 207038 to 207638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,520 DEBUG Processing 221/725 atomic regions from SNP 66001 to 66601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,555 DEBUG Processing 252/740 atomic regions from SNP 75300 to 75900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,616 DEBUG Processing 120/698 atomic regions from SNP 35722 to 36322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,748 DEBUG Processing 692/846 atomic regions from SNP 207338 to 207938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,773 DEBUG Processing 222/725 atomic regions from SNP 66301 to 66901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,803 DEBUG Processing 253/740 atomic regions from SNP 75600 to 76200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,870 DEBUG Processing 121/698 atomic regions from SNP 36022 to 36622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,021 DEBUG Processing 223/725 atomic regions from SNP 66601 to 67201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,037 DEBUG Processing 693/846 atomic regions from SNP 207638 to 208238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,045 DEBUG Processing 254/740 atomic regions from SNP 75900 to 76500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,116 DEBUG Processing 122/698 atomic regions from SNP 36322 to 36922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,264 DEBUG Processing 224/725 atomic regions from SNP 66901 to 67501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,289 DEBUG Processing 255/740 atomic regions from SNP 76200 to 76800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,336 DEBUG Processing 694/846 atomic regions from SNP 207938 to 208538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,377 DEBUG Processing 123/698 atomic regions from SNP 36622 to 37222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,502 DEBUG Processing 225/725 atomic regions from SNP 67201 to 67801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,531 DEBUG Processing 256/740 atomic regions from SNP 76500 to 77100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,602 DEBUG Processing 695/846 atomic regions from SNP 208238 to 208838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,649 DEBUG Processing 124/698 atomic regions from SNP 36922 to 37522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,742 DEBUG Processing 226/725 atomic regions from SNP 67501 to 68101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,769 DEBUG Processing 257/740 atomic regions from SNP 76800 to 77400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,860 DEBUG Processing 696/846 atomic regions from SNP 208538 to 209138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,913 DEBUG Processing 125/698 atomic regions from SNP 37222 to 37822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,977 DEBUG Processing 227/725 atomic regions from SNP 67801 to 68401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,002 DEBUG Processing 258/740 atomic regions from SNP 77100 to 77700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,115 DEBUG Processing 697/846 atomic regions from SNP 208838 to 209438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,156 DEBUG Processing 126/698 atomic regions from SNP 37522 to 38122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,214 DEBUG Processing 228/725 atomic regions from SNP 68101 to 68701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,240 DEBUG Processing 259/740 atomic regions from SNP 77400 to 78000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,369 DEBUG Processing 698/846 atomic regions from SNP 209138 to 209738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,393 DEBUG Processing 127/698 atomic regions from SNP 37822 to 38422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,450 DEBUG Processing 229/725 atomic regions from SNP 68401 to 69001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,478 DEBUG Processing 260/740 atomic regions from SNP 77700 to 78300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,628 DEBUG Processing 128/698 atomic regions from SNP 38122 to 38722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,628 DEBUG Processing 699/846 atomic regions from SNP 209438 to 210038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,691 DEBUG Processing 230/725 atomic regions from SNP 68701 to 69301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,711 DEBUG Processing 261/740 atomic regions from SNP 78000 to 78600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,864 DEBUG Processing 129/698 atomic regions from SNP 38422 to 39022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,892 DEBUG Processing 700/846 atomic regions from SNP 209738 to 210338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,933 DEBUG Processing 231/725 atomic regions from SNP 69001 to 69601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,949 DEBUG Processing 262/740 atomic regions from SNP 78300 to 78900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,098 DEBUG Processing 130/698 atomic regions from SNP 38722 to 39322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,174 DEBUG Processing 232/725 atomic regions from SNP 69301 to 69901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,178 DEBUG Processing 701/846 atomic regions from SNP 210038 to 210638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,186 DEBUG Processing 263/740 atomic regions from SNP 78600 to 79200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,339 DEBUG Processing 131/698 atomic regions from SNP 39022 to 39622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,419 DEBUG Processing 233/725 atomic regions from SNP 69601 to 70201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,429 DEBUG Processing 264/740 atomic regions from SNP 78900 to 79500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,461 DEBUG Processing 702/846 atomic regions from SNP 210338 to 210938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,579 DEBUG Processing 132/698 atomic regions from SNP 39322 to 39922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,665 DEBUG Processing 234/725 atomic regions from SNP 69901 to 70501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,682 DEBUG Processing 265/740 atomic regions from SNP 79200 to 79800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,754 DEBUG Processing 703/846 atomic regions from SNP 210638 to 211238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,820 DEBUG Processing 133/698 atomic regions from SNP 39622 to 40222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,917 DEBUG Processing 235/725 atomic regions from SNP 70201 to 70801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,929 DEBUG Processing 266/740 atomic regions from SNP 79500 to 80100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,060 DEBUG Processing 134/698 atomic regions from SNP 39922 to 40522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,069 DEBUG Processing 704/846 atomic regions from SNP 210938 to 211538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,162 DEBUG Processing 236/725 atomic regions from SNP 70501 to 71101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,164 DEBUG Processing 267/740 atomic regions from SNP 79800 to 80400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,331 DEBUG Processing 135/698 atomic regions from SNP 40222 to 40822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,370 DEBUG Processing 705/846 atomic regions from SNP 211238 to 211838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,411 DEBUG Processing 237/725 atomic regions from SNP 70801 to 71401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,419 DEBUG Processing 268/740 atomic regions from SNP 80100 to 80700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,597 DEBUG Processing 136/698 atomic regions from SNP 40522 to 41122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,658 DEBUG Processing 238/725 atomic regions from SNP 71101 to 71701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,660 DEBUG Processing 269/740 atomic regions from SNP 80400 to 81000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,663 DEBUG Processing 706/846 atomic regions from SNP 211538 to 212138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,847 DEBUG Processing 137/698 atomic regions from SNP 40822 to 41422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,895 DEBUG Processing 270/740 atomic regions from SNP 80700 to 81300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,903 DEBUG Processing 239/725 atomic regions from SNP 71401 to 72001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,956 DEBUG Processing 707/846 atomic regions from SNP 211838 to 212438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,096 DEBUG Processing 138/698 atomic regions from SNP 41122 to 41722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,131 DEBUG Processing 271/740 atomic regions from SNP 81000 to 81600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,162 DEBUG Processing 240/725 atomic regions from SNP 71701 to 72301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,255 DEBUG Processing 708/846 atomic regions from SNP 212138 to 212738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,340 DEBUG Processing 139/698 atomic regions from SNP 41422 to 42022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,370 DEBUG Processing 272/740 atomic regions from SNP 81300 to 81900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,415 DEBUG Processing 241/725 atomic regions from SNP 72001 to 72601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,537 DEBUG Processing 709/846 atomic regions from SNP 212438 to 213038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,597 DEBUG Processing 140/698 atomic regions from SNP 41722 to 42322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,607 DEBUG Processing 273/740 atomic regions from SNP 81600 to 82200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,671 DEBUG Processing 242/725 atomic regions from SNP 72301 to 72901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,807 DEBUG Processing 710/846 atomic regions from SNP 212738 to 213338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,847 DEBUG Processing 274/740 atomic regions from SNP 81900 to 82500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,860 DEBUG Processing 141/698 atomic regions from SNP 42022 to 42622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,932 DEBUG Processing 243/725 atomic regions from SNP 72601 to 73201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,068 DEBUG Processing 711/846 atomic regions from SNP 213038 to 213638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,090 DEBUG Processing 275/740 atomic regions from SNP 82200 to 82800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,102 DEBUG Processing 142/698 atomic regions from SNP 42322 to 42922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,193 DEBUG Processing 244/725 atomic regions from SNP 72901 to 73501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,327 DEBUG Processing 712/846 atomic regions from SNP 213338 to 213938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,329 DEBUG Processing 276/740 atomic regions from SNP 82500 to 83100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,345 DEBUG Processing 143/698 atomic regions from SNP 42622 to 43222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,428 DEBUG Processing 245/725 atomic regions from SNP 73201 to 73801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,568 DEBUG Processing 277/740 atomic regions from SNP 82800 to 83400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,592 DEBUG Processing 144/698 atomic regions from SNP 42922 to 43522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,592 DEBUG Processing 713/846 atomic regions from SNP 213638 to 214238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,665 DEBUG Processing 246/725 atomic regions from SNP 73501 to 74101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,805 DEBUG Processing 278/740 atomic regions from SNP 83100 to 83700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,839 DEBUG Processing 145/698 atomic regions from SNP 43222 to 43822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,853 DEBUG Processing 714/846 atomic regions from SNP 213938 to 214538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,902 DEBUG Processing 247/725 atomic regions from SNP 73801 to 74401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,036 DEBUG Processing 279/740 atomic regions from SNP 83400 to 84000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,084 DEBUG Processing 146/698 atomic regions from SNP 43522 to 44122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,114 DEBUG Processing 715/846 atomic regions from SNP 214238 to 214838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,143 DEBUG Processing 248/725 atomic regions from SNP 74101 to 74701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,265 DEBUG Processing 280/740 atomic regions from SNP 83700 to 84300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,328 DEBUG Processing 147/698 atomic regions from SNP 43822 to 44422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,374 DEBUG Processing 716/846 atomic regions from SNP 214538 to 215138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,408 DEBUG Processing 249/725 atomic regions from SNP 74401 to 75001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,493 DEBUG Processing 281/740 atomic regions from SNP 84000 to 84600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,570 DEBUG Processing 148/698 atomic regions from SNP 44122 to 44722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,646 DEBUG Processing 717/846 atomic regions from SNP 214838 to 215438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,677 DEBUG Processing 250/725 atomic regions from SNP 74701 to 75301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,722 DEBUG Processing 282/740 atomic regions from SNP 84300 to 84900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,807 DEBUG Processing 149/698 atomic regions from SNP 44422 to 45022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,912 DEBUG Processing 718/846 atomic regions from SNP 215138 to 215738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,917 DEBUG Processing 251/725 atomic regions from SNP 75001 to 75601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,957 DEBUG Processing 283/740 atomic regions from SNP 84600 to 85200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,047 DEBUG Processing 150/698 atomic regions from SNP 44722 to 45322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,159 DEBUG Processing 252/725 atomic regions from SNP 75301 to 75901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,189 DEBUG Processing 719/846 atomic regions from SNP 215438 to 216038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,191 DEBUG Processing 284/740 atomic regions from SNP 84900 to 85500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,278 DEBUG Processing 151/698 atomic regions from SNP 45022 to 45622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,403 DEBUG Processing 253/725 atomic regions from SNP 75601 to 76201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,431 DEBUG Processing 285/740 atomic regions from SNP 85200 to 85800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,481 DEBUG Processing 720/846 atomic regions from SNP 215738 to 216338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,514 DEBUG Processing 152/698 atomic regions from SNP 45322 to 45922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,645 DEBUG Processing 254/725 atomic regions from SNP 75901 to 76501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,667 DEBUG Processing 286/740 atomic regions from SNP 85500 to 86100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,756 DEBUG Processing 153/698 atomic regions from SNP 45622 to 46222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,768 DEBUG Processing 721/846 atomic regions from SNP 216038 to 216638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,886 DEBUG Processing 255/725 atomic regions from SNP 76201 to 76801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,902 DEBUG Processing 287/740 atomic regions from SNP 85800 to 86400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,996 DEBUG Processing 154/698 atomic regions from SNP 45922 to 46522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,035 DEBUG Processing 722/846 atomic regions from SNP 216338 to 216938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,129 DEBUG Processing 256/725 atomic regions from SNP 76501 to 77101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,137 DEBUG Processing 288/740 atomic regions from SNP 86100 to 86700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,236 DEBUG Processing 155/698 atomic regions from SNP 46222 to 46822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,308 DEBUG Processing 723/846 atomic regions from SNP 216638 to 217238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,373 DEBUG Processing 289/740 atomic regions from SNP 86400 to 87000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,376 DEBUG Processing 257/725 atomic regions from SNP 76801 to 77401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,475 DEBUG Processing 156/698 atomic regions from SNP 46522 to 47122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,584 DEBUG Processing 724/846 atomic regions from SNP 216938 to 217538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,612 DEBUG Processing 290/740 atomic regions from SNP 86700 to 87300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,620 DEBUG Processing 258/725 atomic regions from SNP 77101 to 77701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,713 DEBUG Processing 157/698 atomic regions from SNP 46822 to 47422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,864 DEBUG Processing 291/740 atomic regions from SNP 87000 to 87600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,865 DEBUG Processing 259/725 atomic regions from SNP 77401 to 78001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,866 DEBUG Processing 725/846 atomic regions from SNP 217238 to 217838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,951 DEBUG Processing 158/698 atomic regions from SNP 47122 to 47722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,102 DEBUG Processing 292/740 atomic regions from SNP 87300 to 87900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,106 DEBUG Processing 260/725 atomic regions from SNP 77701 to 78301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,161 DEBUG Processing 726/846 atomic regions from SNP 217538 to 218138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,193 DEBUG Processing 159/698 atomic regions from SNP 47422 to 48022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,336 DEBUG Processing 293/740 atomic regions from SNP 87600 to 88200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,340 DEBUG Processing 261/725 atomic regions from SNP 78001 to 78601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,437 DEBUG Processing 160/698 atomic regions from SNP 47722 to 48322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,438 DEBUG Processing 727/846 atomic regions from SNP 217838 to 218438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,568 DEBUG Processing 294/740 atomic regions from SNP 87900 to 88500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,575 DEBUG Processing 262/725 atomic regions from SNP 78301 to 78901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,682 DEBUG Processing 161/698 atomic regions from SNP 48022 to 48622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,726 DEBUG Processing 728/846 atomic regions from SNP 218138 to 218738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,801 DEBUG Processing 295/740 atomic regions from SNP 88200 to 88800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,811 DEBUG Processing 263/725 atomic regions from SNP 78601 to 79201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,925 DEBUG Processing 162/698 atomic regions from SNP 48322 to 48922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,012 DEBUG Processing 729/846 atomic regions from SNP 218438 to 219038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,032 DEBUG Processing 296/740 atomic regions from SNP 88500 to 89100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,047 DEBUG Processing 264/725 atomic regions from SNP 78901 to 79501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,167 DEBUG Processing 163/698 atomic regions from SNP 48622 to 49222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,269 DEBUG Processing 297/740 atomic regions from SNP 88800 to 89400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,274 DEBUG Processing 730/846 atomic regions from SNP 218738 to 219338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,287 DEBUG Processing 265/725 atomic regions from SNP 79201 to 79801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,409 DEBUG Processing 164/698 atomic regions from SNP 48922 to 49522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,505 DEBUG Processing 298/740 atomic regions from SNP 89100 to 89700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,527 DEBUG Processing 266/725 atomic regions from SNP 79501 to 80101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,536 DEBUG Processing 731/846 atomic regions from SNP 219038 to 219638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,647 DEBUG Processing 165/698 atomic regions from SNP 49222 to 49822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,740 DEBUG Processing 299/740 atomic regions from SNP 89400 to 90000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,775 DEBUG Processing 267/725 atomic regions from SNP 79801 to 80401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,794 DEBUG Processing 732/846 atomic regions from SNP 219338 to 219938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,885 DEBUG Processing 166/698 atomic regions from SNP 49522 to 50122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,978 DEBUG Processing 300/740 atomic regions from SNP 89700 to 90300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,016 DEBUG Processing 268/725 atomic regions from SNP 80101 to 80701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,052 DEBUG Processing 733/846 atomic regions from SNP 219638 to 220238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,124 DEBUG Processing 167/698 atomic regions from SNP 49822 to 50422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,214 DEBUG Processing 301/740 atomic regions from SNP 90000 to 90600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,257 DEBUG Processing 269/725 atomic regions from SNP 80401 to 81001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,309 DEBUG Processing 734/846 atomic regions from SNP 219938 to 220538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,367 DEBUG Processing 168/698 atomic regions from SNP 50122 to 50722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,453 DEBUG Processing 302/740 atomic regions from SNP 90300 to 90900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,503 DEBUG Processing 270/725 atomic regions from SNP 80701 to 81301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,571 DEBUG Processing 735/846 atomic regions from SNP 220238 to 220838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,612 DEBUG Processing 169/698 atomic regions from SNP 50422 to 51022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,693 DEBUG Processing 303/740 atomic regions from SNP 90600 to 91200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,751 DEBUG Processing 271/725 atomic regions from SNP 81001 to 81601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,833 DEBUG Processing 736/846 atomic regions from SNP 220538 to 221138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,858 DEBUG Processing 170/698 atomic regions from SNP 50722 to 51322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,930 DEBUG Processing 304/740 atomic regions from SNP 90900 to 91500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,997 DEBUG Processing 272/725 atomic regions from SNP 81301 to 81901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,088 DEBUG Processing 737/846 atomic regions from SNP 220838 to 221438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,097 DEBUG Processing 171/698 atomic regions from SNP 51022 to 51622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,169 DEBUG Processing 305/740 atomic regions from SNP 91200 to 91800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,243 DEBUG Processing 273/725 atomic regions from SNP 81601 to 82201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,336 DEBUG Processing 172/698 atomic regions from SNP 51322 to 51922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,347 DEBUG Processing 738/846 atomic regions from SNP 221138 to 221738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,409 DEBUG Processing 306/740 atomic regions from SNP 91500 to 92100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,485 DEBUG Processing 274/725 atomic regions from SNP 81901 to 82501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,574 DEBUG Processing 173/698 atomic regions from SNP 51622 to 52222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,605 DEBUG Processing 739/846 atomic regions from SNP 221438 to 222038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,647 DEBUG Processing 307/740 atomic regions from SNP 91800 to 92400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,726 DEBUG Processing 275/725 atomic regions from SNP 82201 to 82801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,831 DEBUG Processing 174/698 atomic regions from SNP 51922 to 52522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,860 DEBUG Processing 740/846 atomic regions from SNP 221738 to 222338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,889 DEBUG Processing 308/740 atomic regions from SNP 92100 to 92700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,974 DEBUG Processing 276/725 atomic regions from SNP 82501 to 83101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,088 DEBUG Processing 175/698 atomic regions from SNP 52222 to 52822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,125 DEBUG Processing 741/846 atomic regions from SNP 222038 to 222638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,131 DEBUG Processing 309/740 atomic regions from SNP 92400 to 93000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,218 DEBUG Processing 277/725 atomic regions from SNP 82801 to 83401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,324 DEBUG Processing 176/698 atomic regions from SNP 52522 to 53122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,364 DEBUG Processing 310/740 atomic regions from SNP 92700 to 93300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,374 DEBUG Processing 742/846 atomic regions from SNP 222338 to 222938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,456 DEBUG Processing 278/725 atomic regions from SNP 83101 to 83701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,562 DEBUG Processing 177/698 atomic regions from SNP 52822 to 53422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,597 DEBUG Processing 311/740 atomic regions from SNP 93000 to 93600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,617 DEBUG Processing 743/846 atomic regions from SNP 222638 to 223238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,698 DEBUG Processing 279/725 atomic regions from SNP 83401 to 84001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,806 DEBUG Processing 178/698 atomic regions from SNP 53122 to 53722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,836 DEBUG Processing 312/740 atomic regions from SNP 93300 to 93900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,870 DEBUG Processing 744/846 atomic regions from SNP 222938 to 223538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,949 DEBUG Processing 280/725 atomic regions from SNP 83701 to 84301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,049 DEBUG Processing 179/698 atomic regions from SNP 53422 to 54022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,074 DEBUG Processing 313/740 atomic regions from SNP 93600 to 94200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,125 DEBUG Processing 745/846 atomic regions from SNP 223238 to 223838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,196 DEBUG Processing 281/725 atomic regions from SNP 84001 to 84601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,295 DEBUG Processing 180/698 atomic regions from SNP 53722 to 54322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,320 DEBUG Processing 314/740 atomic regions from SNP 93900 to 94500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,398 DEBUG Processing 746/846 atomic regions from SNP 223538 to 224138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,444 DEBUG Processing 282/725 atomic regions from SNP 84301 to 84901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,533 DEBUG Processing 181/698 atomic regions from SNP 54022 to 54622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,556 DEBUG Processing 315/740 atomic regions from SNP 94200 to 94800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,659 DEBUG Processing 747/846 atomic regions from SNP 223838 to 224438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,685 DEBUG Processing 283/725 atomic regions from SNP 84601 to 85201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,777 DEBUG Processing 182/698 atomic regions from SNP 54322 to 54922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,821 DEBUG Processing 316/740 atomic regions from SNP 94500 to 95100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,924 DEBUG Processing 748/846 atomic regions from SNP 224138 to 224738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:49,929 DEBUG Processing 284/725 atomic regions from SNP 84901 to 85501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,022 DEBUG Processing 183/698 atomic regions from SNP 54622 to 55222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,067 DEBUG Processing 317/740 atomic regions from SNP 94800 to 95400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,167 DEBUG Processing 285/725 atomic regions from SNP 85201 to 85801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,179 DEBUG Processing 749/846 atomic regions from SNP 224438 to 225038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,258 DEBUG Processing 184/698 atomic regions from SNP 54922 to 55522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,298 DEBUG Processing 318/740 atomic regions from SNP 95100 to 95700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,407 DEBUG Processing 286/725 atomic regions from SNP 85501 to 86101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,434 DEBUG Processing 750/846 atomic regions from SNP 224738 to 225338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,495 DEBUG Processing 185/698 atomic regions from SNP 55222 to 55822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,536 DEBUG Processing 319/740 atomic regions from SNP 95400 to 96000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,644 DEBUG Processing 287/725 atomic regions from SNP 85801 to 86401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,692 DEBUG Processing 751/846 atomic regions from SNP 225038 to 225638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,735 DEBUG Processing 186/698 atomic regions from SNP 55522 to 56122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,771 DEBUG Processing 320/740 atomic regions from SNP 95700 to 96300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,883 DEBUG Processing 288/725 atomic regions from SNP 86101 to 86701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,951 DEBUG Processing 752/846 atomic regions from SNP 225338 to 225938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:50,975 DEBUG Processing 187/698 atomic regions from SNP 55822 to 56422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,013 DEBUG Processing 321/740 atomic regions from SNP 96000 to 96600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,131 DEBUG Processing 289/725 atomic regions from SNP 86401 to 87001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,228 DEBUG Processing 753/846 atomic regions from SNP 225638 to 226238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,234 DEBUG Processing 188/698 atomic regions from SNP 56122 to 56722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,276 DEBUG Processing 322/740 atomic regions from SNP 96300 to 96900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,365 DEBUG Processing 290/725 atomic regions from SNP 86701 to 87301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,465 DEBUG Processing 189/698 atomic regions from SNP 56422 to 57022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,484 DEBUG Processing 754/846 atomic regions from SNP 225938 to 226538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,512 DEBUG Processing 323/740 atomic regions from SNP 96600 to 97200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,597 DEBUG Processing 291/725 atomic regions from SNP 87001 to 87601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,698 DEBUG Processing 190/698 atomic regions from SNP 56722 to 57322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,739 DEBUG Processing 324/740 atomic regions from SNP 96900 to 97500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,744 DEBUG Processing 755/846 atomic regions from SNP 226238 to 226838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:51,832 DEBUG Processing 292/725 atomic regions from SNP 87301 to 87901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,931 DEBUG Processing 191/698 atomic regions from SNP 57022 to 57622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,989 DEBUG Processing 325/740 atomic regions from SNP 97200 to 97800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,999 DEBUG Processing 756/846 atomic regions from SNP 226538 to 227138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,068 DEBUG Processing 293/725 atomic regions from SNP 87601 to 88201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,165 DEBUG Processing 192/698 atomic regions from SNP 57322 to 57922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,252 DEBUG Processing 326/740 atomic regions from SNP 97500 to 98100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,258 DEBUG Processing 757/846 atomic regions from SNP 226838 to 227438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,302 DEBUG Processing 294/725 atomic regions from SNP 87901 to 88501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,397 DEBUG Processing 193/698 atomic regions from SNP 57622 to 58222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,509 DEBUG Processing 327/740 atomic regions from SNP 97800 to 98400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,538 DEBUG Processing 758/846 atomic regions from SNP 227138 to 227738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,543 DEBUG Processing 295/725 atomic regions from SNP 88201 to 88801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,634 DEBUG Processing 194/698 atomic regions from SNP 57922 to 58522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,764 DEBUG Processing 328/740 atomic regions from SNP 98100 to 98700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,780 DEBUG Processing 296/725 atomic regions from SNP 88501 to 89101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,831 DEBUG Processing 759/846 atomic regions from SNP 227438 to 228038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:52,871 DEBUG Processing 195/698 atomic regions from SNP 58222 to 58822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,026 DEBUG Processing 329/740 atomic regions from SNP 98400 to 99000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,028 DEBUG Processing 297/725 atomic regions from SNP 88801 to 89401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,111 DEBUG Processing 196/698 atomic regions from SNP 58522 to 59122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,116 DEBUG Processing 760/846 atomic regions from SNP 227738 to 228338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,270 DEBUG Processing 298/725 atomic regions from SNP 89101 to 89701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,285 DEBUG Processing 330/740 atomic regions from SNP 98700 to 99300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,344 DEBUG Processing 197/698 atomic regions from SNP 58822 to 59422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,397 DEBUG Processing 761/846 atomic regions from SNP 228038 to 228638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,506 DEBUG Processing 299/725 atomic regions from SNP 89401 to 90001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,538 DEBUG Processing 331/740 atomic regions from SNP 99000 to 99600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,575 DEBUG Processing 198/698 atomic regions from SNP 59122 to 59722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,671 DEBUG Processing 762/846 atomic regions from SNP 228338 to 228938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:53,762 DEBUG Processing 300/725 atomic regions from SNP 89701 to 90301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,790 DEBUG Processing 332/740 atomic regions from SNP 99300 to 99900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,807 DEBUG Processing 199/698 atomic regions from SNP 59422 to 60022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,935 DEBUG Processing 763/846 atomic regions from SNP 228638 to 229238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,005 DEBUG Processing 301/725 atomic regions from SNP 90001 to 90601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,042 DEBUG Processing 333/740 atomic regions from SNP 99600 to 100200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,045 DEBUG Processing 200/698 atomic regions from SNP 59722 to 60322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,197 DEBUG Processing 764/846 atomic regions from SNP 228938 to 229538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,260 DEBUG Processing 302/725 atomic regions from SNP 90301 to 90901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,276 DEBUG Processing 201/698 atomic regions from SNP 60022 to 60622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,293 DEBUG Processing 334/740 atomic regions from SNP 99900 to 100500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,459 DEBUG Processing 765/846 atomic regions from SNP 229238 to 229838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,508 DEBUG Processing 202/698 atomic regions from SNP 60322 to 60922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,517 DEBUG Processing 303/725 atomic regions from SNP 90601 to 91201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,551 DEBUG Processing 335/740 atomic regions from SNP 100200 to 100800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,721 DEBUG Processing 766/846 atomic regions from SNP 229538 to 230138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,746 DEBUG Processing 203/698 atomic regions from SNP 60622 to 61222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,762 DEBUG Processing 304/725 atomic regions from SNP 90901 to 91501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,823 DEBUG Processing 336/740 atomic regions from SNP 100500 to 101100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,980 DEBUG Processing 767/846 atomic regions from SNP 229838 to 230438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:54,980 DEBUG Processing 204/698 atomic regions from SNP 60922 to 61522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,006 DEBUG Processing 305/725 atomic regions from SNP 91201 to 91801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,085 DEBUG Processing 337/740 atomic regions from SNP 100800 to 101400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,212 DEBUG Processing 205/698 atomic regions from SNP 61222 to 61822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,246 DEBUG Processing 768/846 atomic regions from SNP 230138 to 230738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,255 DEBUG Processing 306/725 atomic regions from SNP 91501 to 92101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,340 DEBUG Processing 338/740 atomic regions from SNP 101100 to 101700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,442 DEBUG Processing 206/698 atomic regions from SNP 61522 to 62122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,499 DEBUG Processing 307/725 atomic regions from SNP 91801 to 92401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,519 DEBUG Processing 769/846 atomic regions from SNP 230438 to 231038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,586 DEBUG Processing 339/740 atomic regions from SNP 101400 to 102000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,673 DEBUG Processing 207/698 atomic regions from SNP 61822 to 62422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,744 DEBUG Processing 308/725 atomic regions from SNP 92101 to 92701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,803 DEBUG Processing 770/846 atomic regions from SNP 230738 to 231338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:55,841 DEBUG Processing 340/740 atomic regions from SNP 101700 to 102300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,909 DEBUG Processing 208/698 atomic regions from SNP 62122 to 62722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,984 DEBUG Processing 309/725 atomic regions from SNP 92401 to 93001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,081 DEBUG Processing 771/846 atomic regions from SNP 231038 to 231638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,111 DEBUG Processing 341/740 atomic regions from SNP 102000 to 102600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,148 DEBUG Processing 209/698 atomic regions from SNP 62422 to 63022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,221 DEBUG Processing 310/725 atomic regions from SNP 92701 to 93301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,359 DEBUG Processing 772/846 atomic regions from SNP 231338 to 231938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,377 DEBUG Processing 342/740 atomic regions from SNP 102300 to 102900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,391 DEBUG Processing 210/698 atomic regions from SNP 62722 to 63322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,451 DEBUG Processing 311/725 atomic regions from SNP 93001 to 93601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,610 DEBUG Processing 773/846 atomic regions from SNP 231638 to 232238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,632 DEBUG Processing 211/698 atomic regions from SNP 63022 to 63622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,643 DEBUG Processing 343/740 atomic regions from SNP 102600 to 103200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,692 DEBUG Processing 312/725 atomic regions from SNP 93301 to 93901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,866 DEBUG Processing 774/846 atomic regions from SNP 231938 to 232538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:56,874 DEBUG Processing 212/698 atomic regions from SNP 63322 to 63922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,906 DEBUG Processing 344/740 atomic regions from SNP 102900 to 103500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,931 DEBUG Processing 313/725 atomic regions from SNP 93601 to 94201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,115 DEBUG Processing 213/698 atomic regions from SNP 63622 to 64222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,123 DEBUG Processing 775/846 atomic regions from SNP 232238 to 232838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,173 DEBUG Processing 314/725 atomic regions from SNP 93901 to 94501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,174 DEBUG Processing 345/740 atomic regions from SNP 103200 to 103800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,372 DEBUG Processing 214/698 atomic regions from SNP 63922 to 64522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,387 DEBUG Processing 776/846 atomic regions from SNP 232538 to 233138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,411 DEBUG Processing 315/725 atomic regions from SNP 94201 to 94801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,436 DEBUG Processing 346/740 atomic regions from SNP 103500 to 104100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,644 DEBUG Processing 777/846 atomic regions from SNP 232838 to 233438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,650 DEBUG Processing 215/698 atomic regions from SNP 64222 to 64822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,651 DEBUG Processing 316/725 atomic regions from SNP 94501 to 95101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,687 DEBUG Processing 347/740 atomic regions from SNP 103800 to 104400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,890 DEBUG Processing 317/725 atomic regions from SNP 94801 to 95401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,905 DEBUG Processing 778/846 atomic regions from SNP 233138 to 233738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:57,914 DEBUG Processing 216/698 atomic regions from SNP 64522 to 65122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,954 DEBUG Processing 348/740 atomic regions from SNP 104100 to 104700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,138 DEBUG Processing 318/725 atomic regions from SNP 95101 to 95701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,161 DEBUG Processing 217/698 atomic regions from SNP 64822 to 65422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,169 DEBUG Processing 779/846 atomic regions from SNP 233438 to 234038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,193 DEBUG Processing 349/740 atomic regions from SNP 104400 to 105000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,380 DEBUG Processing 319/725 atomic regions from SNP 95401 to 96001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,402 DEBUG Processing 218/698 atomic regions from SNP 65122 to 65722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,427 DEBUG Processing 780/846 atomic regions from SNP 233738 to 234338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,428 DEBUG Processing 350/740 atomic regions from SNP 104700 to 105300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,616 DEBUG Processing 320/725 atomic regions from SNP 95701 to 96301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,641 DEBUG Processing 219/698 atomic regions from SNP 65422 to 66022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,665 DEBUG Processing 351/740 atomic regions from SNP 105000 to 105600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,684 DEBUG Processing 781/846 atomic regions from SNP 234038 to 234638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:58,876 DEBUG Processing 321/725 atomic regions from SNP 96001 to 96601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,880 DEBUG Processing 220/698 atomic regions from SNP 65722 to 66322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,903 DEBUG Processing 352/740 atomic regions from SNP 105300 to 105900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,946 DEBUG Processing 782/846 atomic regions from SNP 234338 to 234938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,140 DEBUG Processing 221/698 atomic regions from SNP 66022 to 66622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,169 DEBUG Processing 322/725 atomic regions from SNP 96301 to 96901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,181 DEBUG Processing 353/740 atomic regions from SNP 105600 to 106200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,226 DEBUG Processing 783/846 atomic regions from SNP 234638 to 235238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,414 DEBUG Processing 222/698 atomic regions from SNP 66322 to 66922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,447 DEBUG Processing 354/740 atomic regions from SNP 105900 to 106500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,447 DEBUG Processing 323/725 atomic regions from SNP 96601 to 97201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,501 DEBUG Processing 784/846 atomic regions from SNP 234938 to 235538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,657 DEBUG Processing 223/698 atomic regions from SNP 66622 to 67222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,697 DEBUG Processing 355/740 atomic regions from SNP 106200 to 106800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,701 DEBUG Processing 324/725 atomic regions from SNP 96901 to 97501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,759 DEBUG Processing 785/846 atomic regions from SNP 235238 to 235838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:59,899 DEBUG Processing 224/698 atomic regions from SNP 66922 to 67522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,944 DEBUG Processing 356/740 atomic regions from SNP 106500 to 107100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,956 DEBUG Processing 325/725 atomic regions from SNP 97201 to 97801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,018 DEBUG Processing 786/846 atomic regions from SNP 235538 to 236138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,140 DEBUG Processing 225/698 atomic regions from SNP 67222 to 67822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,185 DEBUG Processing 357/740 atomic regions from SNP 106800 to 107400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,197 DEBUG Processing 326/725 atomic regions from SNP 97501 to 98101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,275 DEBUG Processing 787/846 atomic regions from SNP 235838 to 236438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,381 DEBUG Processing 226/698 atomic regions from SNP 67522 to 68122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,423 DEBUG Processing 358/740 atomic regions from SNP 107100 to 107700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,445 DEBUG Processing 327/725 atomic regions from SNP 97801 to 98401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,534 DEBUG Processing 788/846 atomic regions from SNP 236138 to 236738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,627 DEBUG Processing 227/698 atomic regions from SNP 67822 to 68422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,665 DEBUG Processing 359/740 atomic regions from SNP 107400 to 108000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,681 DEBUG Processing 328/725 atomic regions from SNP 98101 to 98701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,779 DEBUG Processing 789/846 atomic regions from SNP 236438 to 237038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:00,897 DEBUG Processing 228/698 atomic regions from SNP 68122 to 68722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,909 DEBUG Processing 360/740 atomic regions from SNP 107700 to 108300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,920 DEBUG Processing 329/725 atomic regions from SNP 98401 to 99001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,034 DEBUG Processing 790/846 atomic regions from SNP 236738 to 237338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,151 DEBUG Processing 361/740 atomic regions from SNP 108000 to 108600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,157 DEBUG Processing 229/698 atomic regions from SNP 68422 to 69022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,163 DEBUG Processing 330/725 atomic regions from SNP 98701 to 99301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,287 DEBUG Processing 791/846 atomic regions from SNP 237038 to 237638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,391 DEBUG Processing 362/740 atomic regions from SNP 108300 to 108900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,396 DEBUG Processing 230/698 atomic regions from SNP 68722 to 69322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,405 DEBUG Processing 331/725 atomic regions from SNP 99001 to 99601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,537 DEBUG Processing 792/846 atomic regions from SNP 237338 to 237938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,636 DEBUG Processing 363/740 atomic regions from SNP 108600 to 109200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,641 DEBUG Processing 231/698 atomic regions from SNP 69022 to 69622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,649 DEBUG Processing 332/725 atomic regions from SNP 99301 to 99901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,809 DEBUG Processing 793/846 atomic regions from SNP 237638 to 238238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:01,870 DEBUG Processing 364/740 atomic regions from SNP 108900 to 109500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,876 DEBUG Processing 232/698 atomic regions from SNP 69322 to 69922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,888 DEBUG Processing 333/725 atomic regions from SNP 99601 to 100201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,060 DEBUG Processing 794/846 atomic regions from SNP 237938 to 238538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,102 DEBUG Processing 365/740 atomic regions from SNP 109200 to 109800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,108 DEBUG Processing 233/698 atomic regions from SNP 69622 to 70222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,126 DEBUG Processing 334/725 atomic regions from SNP 99901 to 100501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,311 DEBUG Processing 795/846 atomic regions from SNP 238238 to 238838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,335 DEBUG Processing 366/740 atomic regions from SNP 109500 to 110100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,355 DEBUG Processing 234/698 atomic regions from SNP 69922 to 70522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,363 DEBUG Processing 335/725 atomic regions from SNP 100201 to 100801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,560 DEBUG Processing 367/740 atomic regions from SNP 109800 to 110400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,561 DEBUG Processing 796/846 atomic regions from SNP 238538 to 239138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,600 DEBUG Processing 336/725 atomic regions from SNP 100501 to 101101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,610 DEBUG Processing 235/698 atomic regions from SNP 70222 to 70822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,787 DEBUG Processing 368/740 atomic regions from SNP 110100 to 110700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,810 DEBUG Processing 797/846 atomic regions from SNP 238838 to 239438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:02,835 DEBUG Processing 337/725 atomic regions from SNP 100801 to 101401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,851 DEBUG Processing 236/698 atomic regions from SNP 70522 to 71122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,018 DEBUG Processing 369/740 atomic regions from SNP 110400 to 111000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,058 DEBUG Processing 798/846 atomic regions from SNP 239138 to 239738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,069 DEBUG Processing 338/725 atomic regions from SNP 101101 to 101701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,089 DEBUG Processing 237/698 atomic regions from SNP 70822 to 71422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,254 DEBUG Processing 370/740 atomic regions from SNP 110700 to 111300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,310 DEBUG Processing 339/725 atomic regions from SNP 101401 to 102001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,316 DEBUG Processing 799/846 atomic regions from SNP 239438 to 240038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,330 DEBUG Processing 238/698 atomic regions from SNP 71122 to 71722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,523 DEBUG Processing 371/740 atomic regions from SNP 111000 to 111600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,552 DEBUG Processing 340/725 atomic regions from SNP 101701 to 102301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,575 DEBUG Processing 800/846 atomic regions from SNP 239738 to 240338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,586 DEBUG Processing 239/698 atomic regions from SNP 71422 to 72022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,748 DEBUG Processing 372/740 atomic regions from SNP 111300 to 111900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,790 DEBUG Processing 341/725 atomic regions from SNP 102001 to 102601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,829 DEBUG Processing 801/846 atomic regions from SNP 240038 to 240638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:03,846 DEBUG Processing 240/698 atomic regions from SNP 71722 to 72322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,972 DEBUG Processing 373/740 atomic regions from SNP 111600 to 112200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,031 DEBUG Processing 342/725 atomic regions from SNP 102301 to 102901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,084 DEBUG Processing 802/846 atomic regions from SNP 240338 to 240938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,097 DEBUG Processing 241/698 atomic regions from SNP 72022 to 72622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,200 DEBUG Processing 374/740 atomic regions from SNP 111900 to 112500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,267 DEBUG Processing 343/725 atomic regions from SNP 102601 to 103201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,331 DEBUG Processing 242/698 atomic regions from SNP 72322 to 72922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,338 DEBUG Processing 803/846 atomic regions from SNP 240638 to 241238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,428 DEBUG Processing 375/740 atomic regions from SNP 112200 to 112800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,506 DEBUG Processing 344/725 atomic regions from SNP 102901 to 103501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,566 DEBUG Processing 243/698 atomic regions from SNP 72622 to 73222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,595 DEBUG Processing 804/846 atomic regions from SNP 240938 to 241538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,662 DEBUG Processing 376/740 atomic regions from SNP 112500 to 113100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,748 DEBUG Processing 345/725 atomic regions from SNP 103201 to 103801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,802 DEBUG Processing 244/698 atomic regions from SNP 72922 to 73522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,851 DEBUG Processing 805/846 atomic regions from SNP 241238 to 241838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:04,894 DEBUG Processing 377/740 atomic regions from SNP 112800 to 113400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,981 DEBUG Processing 346/725 atomic regions from SNP 103501 to 104101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,031 DEBUG Processing 245/698 atomic regions from SNP 73222 to 73822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,117 DEBUG Processing 806/846 atomic regions from SNP 241538 to 242138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,119 DEBUG Processing 378/740 atomic regions from SNP 113100 to 113700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,219 DEBUG Processing 347/725 atomic regions from SNP 103801 to 104401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,262 DEBUG Processing 246/698 atomic regions from SNP 73522 to 74122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,352 DEBUG Processing 379/740 atomic regions from SNP 113400 to 114000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,389 DEBUG Processing 807/846 atomic regions from SNP 241838 to 242438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,455 DEBUG Processing 348/725 atomic regions from SNP 104101 to 104701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,489 DEBUG Processing 247/698 atomic regions from SNP 73822 to 74422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,580 DEBUG Processing 380/740 atomic regions from SNP 113700 to 114300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,643 DEBUG Processing 808/846 atomic regions from SNP 242138 to 242738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,696 DEBUG Processing 349/725 atomic regions from SNP 104401 to 105001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,717 DEBUG Processing 248/698 atomic regions from SNP 74122 to 74722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,820 DEBUG Processing 381/740 atomic regions from SNP 114000 to 114600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,909 DEBUG Processing 809/846 atomic regions from SNP 242438 to 243038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:05,942 DEBUG Processing 350/725 atomic regions from SNP 104701 to 105301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,948 DEBUG Processing 249/698 atomic regions from SNP 74422 to 75022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,052 DEBUG Processing 382/740 atomic regions from SNP 114300 to 114900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,167 DEBUG Processing 810/846 atomic regions from SNP 242738 to 243338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,174 DEBUG Processing 250/698 atomic regions from SNP 74722 to 75322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,183 DEBUG Processing 351/725 atomic regions from SNP 105001 to 105601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,278 DEBUG Processing 383/740 atomic regions from SNP 114600 to 115200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,405 DEBUG Processing 251/698 atomic regions from SNP 75022 to 75622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,431 DEBUG Processing 811/846 atomic regions from SNP 243038 to 243638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,431 DEBUG Processing 352/725 atomic regions from SNP 105301 to 105901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,524 DEBUG Processing 384/740 atomic regions from SNP 114900 to 115500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,636 DEBUG Processing 252/698 atomic regions from SNP 75322 to 75922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,674 DEBUG Processing 353/725 atomic regions from SNP 105601 to 106201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,691 DEBUG Processing 812/846 atomic regions from SNP 243338 to 243938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:06,772 DEBUG Processing 385/740 atomic regions from SNP 115200 to 115800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,862 DEBUG Processing 253/698 atomic regions from SNP 75622 to 76222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,918 DEBUG Processing 354/725 atomic regions from SNP 105901 to 106501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,954 DEBUG Processing 813/846 atomic regions from SNP 243638 to 244238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,022 DEBUG Processing 386/740 atomic regions from SNP 115500 to 116100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,091 DEBUG Processing 254/698 atomic regions from SNP 75922 to 76522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,162 DEBUG Processing 355/725 atomic regions from SNP 106201 to 106801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,215 DEBUG Processing 814/846 atomic regions from SNP 243938 to 244538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,272 DEBUG Processing 387/740 atomic regions from SNP 115800 to 116400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,316 DEBUG Processing 255/698 atomic regions from SNP 76222 to 76822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,400 DEBUG Processing 356/725 atomic regions from SNP 106501 to 107101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,475 DEBUG Processing 815/846 atomic regions from SNP 244238 to 244838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,504 DEBUG Processing 388/740 atomic regions from SNP 116100 to 116700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,541 DEBUG Processing 256/698 atomic regions from SNP 76522 to 77122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,637 DEBUG Processing 357/725 atomic regions from SNP 106801 to 107401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,736 DEBUG Processing 389/740 atomic regions from SNP 116400 to 117000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,737 DEBUG Processing 816/846 atomic regions from SNP 244538 to 245138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:07,774 DEBUG Processing 257/698 atomic regions from SNP 76822 to 77422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,873 DEBUG Processing 358/725 atomic regions from SNP 107101 to 107701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,965 DEBUG Processing 390/740 atomic regions from SNP 116700 to 117300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,000 DEBUG Processing 817/846 atomic regions from SNP 244838 to 245438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,008 DEBUG Processing 258/698 atomic regions from SNP 77122 to 77722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,109 DEBUG Processing 359/725 atomic regions from SNP 107401 to 108001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,192 DEBUG Processing 391/740 atomic regions from SNP 117000 to 117600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,241 DEBUG Processing 259/698 atomic regions from SNP 77422 to 78022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,263 DEBUG Processing 818/846 atomic regions from SNP 245138 to 245738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,354 DEBUG Processing 360/725 atomic regions from SNP 107701 to 108301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,425 DEBUG Processing 392/740 atomic regions from SNP 117300 to 117900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,483 DEBUG Processing 260/698 atomic regions from SNP 77722 to 78322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,526 DEBUG Processing 819/846 atomic regions from SNP 245438 to 246038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,593 DEBUG Processing 361/725 atomic regions from SNP 108001 to 108601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,659 DEBUG Processing 393/740 atomic regions from SNP 117600 to 118200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,723 DEBUG Processing 261/698 atomic regions from SNP 78022 to 78622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,784 DEBUG Processing 820/846 atomic regions from SNP 245738 to 246338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:08,839 DEBUG Processing 362/725 atomic regions from SNP 108301 to 108901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,919 DEBUG Processing 394/740 atomic regions from SNP 117900 to 118500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,962 DEBUG Processing 262/698 atomic regions from SNP 78322 to 78922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,045 DEBUG Processing 821/846 atomic regions from SNP 246038 to 246638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,083 DEBUG Processing 363/725 atomic regions from SNP 108601 to 109201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,158 DEBUG Processing 395/740 atomic regions from SNP 118200 to 118800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,208 DEBUG Processing 263/698 atomic regions from SNP 78622 to 79222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,315 DEBUG Processing 822/846 atomic regions from SNP 246338 to 246938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,338 DEBUG Processing 364/725 atomic regions from SNP 108901 to 109501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,397 DEBUG Processing 396/740 atomic regions from SNP 118500 to 119100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,448 DEBUG Processing 264/698 atomic regions from SNP 78922 to 79522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,575 DEBUG Processing 823/846 atomic regions from SNP 246638 to 247238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,584 DEBUG Processing 365/725 atomic regions from SNP 109201 to 109801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,633 DEBUG Processing 397/740 atomic regions from SNP 118800 to 119400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,690 DEBUG Processing 265/698 atomic regions from SNP 79222 to 79822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,838 DEBUG Processing 366/725 atomic regions from SNP 109501 to 110101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,852 DEBUG Processing 824/846 atomic regions from SNP 246938 to 247538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:09,871 DEBUG Processing 398/740 atomic regions from SNP 119100 to 119700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,931 DEBUG Processing 266/698 atomic regions from SNP 79522 to 80122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,084 DEBUG Processing 367/725 atomic regions from SNP 109801 to 110401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,111 DEBUG Processing 399/740 atomic regions from SNP 119400 to 120000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,116 DEBUG Processing 825/846 atomic regions from SNP 247238 to 247838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,177 DEBUG Processing 267/698 atomic regions from SNP 79822 to 80422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,328 DEBUG Processing 368/725 atomic regions from SNP 110101 to 110701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,349 DEBUG Processing 400/740 atomic regions from SNP 119700 to 120300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,384 DEBUG Processing 826/846 atomic regions from SNP 247538 to 248138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,426 DEBUG Processing 268/698 atomic regions from SNP 80122 to 80722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,564 DEBUG Processing 369/725 atomic regions from SNP 110401 to 111001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,584 DEBUG Processing 401/740 atomic regions from SNP 120000 to 120600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,641 DEBUG Processing 827/846 atomic regions from SNP 247838 to 248438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,672 DEBUG Processing 269/698 atomic regions from SNP 80422 to 81022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,809 DEBUG Processing 370/725 atomic regions from SNP 110701 to 111301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,816 DEBUG Processing 402/740 atomic regions from SNP 120300 to 120900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,901 DEBUG Processing 828/846 atomic regions from SNP 248138 to 248738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:10,915 DEBUG Processing 270/698 atomic regions from SNP 80722 to 81322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,049 DEBUG Processing 403/740 atomic regions from SNP 120600 to 121200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,077 DEBUG Processing 371/725 atomic regions from SNP 111001 to 111601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,160 DEBUG Processing 271/698 atomic regions from SNP 81022 to 81622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,161 DEBUG Processing 829/846 atomic regions from SNP 248438 to 249038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,280 DEBUG Processing 404/740 atomic regions from SNP 120900 to 121500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,344 DEBUG Processing 372/725 atomic regions from SNP 111301 to 111901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,414 DEBUG Processing 272/698 atomic regions from SNP 81322 to 81922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,446 DEBUG Processing 830/846 atomic regions from SNP 248738 to 249338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,510 DEBUG Processing 405/740 atomic regions from SNP 121200 to 121800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,610 DEBUG Processing 373/725 atomic regions from SNP 111601 to 112201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,699 DEBUG Processing 273/698 atomic regions from SNP 81622 to 82222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,742 DEBUG Processing 831/846 atomic regions from SNP 249038 to 249638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:11,756 DEBUG Processing 406/740 atomic regions from SNP 121500 to 122100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,914 DEBUG Processing 374/725 atomic regions from SNP 111901 to 112501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,963 DEBUG Processing 274/698 atomic regions from SNP 81922 to 82522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,002 DEBUG Processing 407/740 atomic regions from SNP 121800 to 122400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,025 DEBUG Processing 832/846 atomic regions from SNP 249338 to 249938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,189 DEBUG Processing 375/725 atomic regions from SNP 112201 to 112801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,196 DEBUG Processing 275/698 atomic regions from SNP 82222 to 82822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,236 DEBUG Processing 408/740 atomic regions from SNP 122100 to 122700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,281 DEBUG Processing 833/846 atomic regions from SNP 249638 to 250238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,439 DEBUG Processing 276/698 atomic regions from SNP 82522 to 83122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,465 DEBUG Processing 376/725 atomic regions from SNP 112501 to 113101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,479 DEBUG Processing 409/740 atomic regions from SNP 122400 to 123000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,543 DEBUG Processing 834/846 atomic regions from SNP 249938 to 250538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,683 DEBUG Processing 277/698 atomic regions from SNP 82822 to 83422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,725 DEBUG Processing 410/740 atomic regions from SNP 122700 to 123300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,740 DEBUG Processing 377/725 atomic regions from SNP 112801 to 113401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,807 DEBUG Processing 835/846 atomic regions from SNP 250238 to 250838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:12,931 DEBUG Processing 278/698 atomic regions from SNP 83122 to 83722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,975 DEBUG Processing 411/740 atomic regions from SNP 123000 to 123600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,011 DEBUG Processing 378/725 atomic regions from SNP 113101 to 113701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,069 DEBUG Processing 836/846 atomic regions from SNP 250538 to 251138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,175 DEBUG Processing 279/698 atomic regions from SNP 83422 to 84022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,217 DEBUG Processing 412/740 atomic regions from SNP 123300 to 123900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,262 DEBUG Processing 379/725 atomic regions from SNP 113401 to 114001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,330 DEBUG Processing 837/846 atomic regions from SNP 250838 to 251438 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,417 DEBUG Processing 280/698 atomic regions from SNP 83722 to 84322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,454 DEBUG Processing 413/740 atomic regions from SNP 123600 to 124200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,536 DEBUG Processing 380/725 atomic regions from SNP 113701 to 114301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,591 DEBUG Processing 838/846 atomic regions from SNP 251138 to 251738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,655 DEBUG Processing 281/698 atomic regions from SNP 84022 to 84622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,694 DEBUG Processing 414/740 atomic regions from SNP 123900 to 124500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,813 DEBUG Processing 381/725 atomic regions from SNP 114001 to 114601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,848 DEBUG Processing 839/846 atomic regions from SNP 251438 to 252038 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:13,905 DEBUG Processing 282/698 atomic regions from SNP 84322 to 84922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,939 DEBUG Processing 415/740 atomic regions from SNP 124200 to 124800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,075 DEBUG Processing 382/725 atomic regions from SNP 114301 to 114901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,103 DEBUG Processing 840/846 atomic regions from SNP 251738 to 252338 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,146 DEBUG Processing 283/698 atomic regions from SNP 84622 to 85222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,177 DEBUG Processing 416/740 atomic regions from SNP 124500 to 125100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,312 DEBUG Processing 383/725 atomic regions from SNP 114601 to 115201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,362 DEBUG Processing 841/846 atomic regions from SNP 252038 to 252638 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,393 DEBUG Processing 284/698 atomic regions from SNP 84922 to 85522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,425 DEBUG Processing 417/740 atomic regions from SNP 124800 to 125400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,553 DEBUG Processing 384/725 atomic regions from SNP 114901 to 115501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,620 DEBUG Processing 842/846 atomic regions from SNP 252338 to 252938 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,644 DEBUG Processing 285/698 atomic regions from SNP 85222 to 85822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,692 DEBUG Processing 418/740 atomic regions from SNP 125100 to 125700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,802 DEBUG Processing 385/725 atomic regions from SNP 115201 to 115801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,876 DEBUG Processing 843/846 atomic regions from SNP 252638 to 253238 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:14,913 DEBUG Processing 286/698 atomic regions from SNP 85522 to 86122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,959 DEBUG Processing 419/740 atomic regions from SNP 125400 to 126000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,071 DEBUG Processing 386/725 atomic regions from SNP 115501 to 116101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,162 DEBUG Processing 844/846 atomic regions from SNP 252938 to 253538 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,176 DEBUG Processing 287/698 atomic regions from SNP 85822 to 86422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,244 DEBUG Processing 420/740 atomic regions from SNP 125700 to 126300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,338 DEBUG Processing 387/725 atomic regions from SNP 115801 to 116401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,421 DEBUG Processing 288/698 atomic regions from SNP 86122 to 86722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,441 DEBUG Processing 845/846 atomic regions from SNP 253238 to 253838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,507 DEBUG Processing 421/740 atomic regions from SNP 126000 to 126600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,569 DEBUG Processing 388/725 atomic regions from SNP 116101 to 116701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,665 DEBUG Processing 289/698 atomic regions from SNP 86422 to 87022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,707 DEBUG Processing 846/846 atomic regions from SNP 253538 to 254138 for chr6 (subchromosome 1 of 1). 2025-01-31 09:53:15,748 DEBUG Processing 422/740 atomic regions from SNP 126300 to 126900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,801 DEBUG Processing 389/725 atomic regions from SNP 116401 to 117001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,849 DEBUG Unique SNPs positions in subchromosome 1: 254139 2025-01-31 09:53:15,906 DEBUG Processing 290/698 atomic regions from SNP 86722 to 87322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,007 DEBUG Processing 423/740 atomic regions from SNP 126600 to 127200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,029 DEBUG Processing 390/725 atomic regions from SNP 116701 to 117301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,153 DEBUG Processing 291/698 atomic regions from SNP 87022 to 87622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,256 DEBUG Processing 391/725 atomic regions from SNP 117001 to 117601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,271 DEBUG Processing 424/740 atomic regions from SNP 126900 to 127500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,395 DEBUG Processing 292/698 atomic regions from SNP 87322 to 87922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,483 DEBUG Processing 392/725 atomic regions from SNP 117301 to 117901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,526 DEBUG Processing 425/740 atomic regions from SNP 127200 to 127800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,641 DEBUG Processing 293/698 atomic regions from SNP 87622 to 88222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,705 DEBUG Processing 393/725 atomic regions from SNP 117601 to 118201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,770 DEBUG Processing 426/740 atomic regions from SNP 127500 to 128100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,879 DEBUG Processing 294/698 atomic regions from SNP 87922 to 88522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,926 DEBUG Processing 394/725 atomic regions from SNP 117901 to 118501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,017 DEBUG Processing 427/740 atomic regions from SNP 127800 to 128400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,123 DEBUG Processing 295/698 atomic regions from SNP 88222 to 88822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,146 DEBUG Processing 395/725 atomic regions from SNP 118201 to 118801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,285 DEBUG Processing 428/740 atomic regions from SNP 128100 to 128700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,368 DEBUG Processing 296/698 atomic regions from SNP 88522 to 89122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,378 DEBUG Processing 396/725 atomic regions from SNP 118501 to 119101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,556 DEBUG Processing 429/740 atomic regions from SNP 128400 to 129000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,618 DEBUG Processing 297/698 atomic regions from SNP 88822 to 89422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,622 DEBUG Processing 397/725 atomic regions from SNP 118801 to 119401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,826 DEBUG Processing 430/740 atomic regions from SNP 128700 to 129300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,874 DEBUG Processing 398/725 atomic regions from SNP 119101 to 119701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,875 DEBUG Processing 298/698 atomic regions from SNP 89122 to 89722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,108 DEBUG Processing 399/725 atomic regions from SNP 119401 to 120001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,109 DEBUG Processing 431/740 atomic regions from SNP 129000 to 129600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,123 DEBUG Processing 299/698 atomic regions from SNP 89422 to 90022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,360 DEBUG Processing 300/698 atomic regions from SNP 89722 to 90322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,361 DEBUG Processing 432/740 atomic regions from SNP 129300 to 129900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,377 DEBUG Processing 400/725 atomic regions from SNP 119701 to 120301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,599 DEBUG Processing 301/698 atomic regions from SNP 90022 to 90622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,616 DEBUG Processing 401/725 atomic regions from SNP 120001 to 120601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,626 DEBUG Processing 433/740 atomic regions from SNP 129600 to 130200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,839 DEBUG Processing 302/698 atomic regions from SNP 90322 to 90922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,853 DEBUG Processing 402/725 atomic regions from SNP 120301 to 120901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,902 DEBUG Processing 434/740 atomic regions from SNP 129900 to 130500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,084 DEBUG Processing 303/698 atomic regions from SNP 90622 to 91222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,098 DEBUG Processing 403/725 atomic regions from SNP 120601 to 121201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,181 DEBUG Processing 435/740 atomic regions from SNP 130200 to 130800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,333 DEBUG Processing 404/725 atomic regions from SNP 120901 to 121501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,347 DEBUG Processing 304/698 atomic regions from SNP 90922 to 91522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,452 DEBUG Processing 436/740 atomic regions from SNP 130500 to 131100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,565 DEBUG Processing 405/725 atomic regions from SNP 121201 to 121801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,588 DEBUG Processing 305/698 atomic regions from SNP 91222 to 91822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,699 DEBUG Processing 437/740 atomic regions from SNP 130800 to 131400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,799 DEBUG Processing 406/725 atomic regions from SNP 121501 to 122101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,844 DEBUG Processing 306/698 atomic regions from SNP 91522 to 92122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,932 DEBUG Processing 438/740 atomic regions from SNP 131100 to 131700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,038 DEBUG Processing 407/725 atomic regions from SNP 121801 to 122401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,115 DEBUG Processing 307/698 atomic regions from SNP 91822 to 92422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,169 DEBUG Processing 439/740 atomic regions from SNP 131400 to 132000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,272 DEBUG Processing 408/725 atomic regions from SNP 122101 to 122701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,385 DEBUG Processing 308/698 atomic regions from SNP 92122 to 92722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,413 DEBUG Processing 440/740 atomic regions from SNP 131700 to 132300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,508 DEBUG Processing 409/725 atomic regions from SNP 122401 to 123001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,648 DEBUG Processing 309/698 atomic regions from SNP 92422 to 93022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,652 DEBUG Processing 441/740 atomic regions from SNP 132000 to 132600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,770 DEBUG Processing 410/725 atomic regions from SNP 122701 to 123301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,909 DEBUG Processing 442/740 atomic regions from SNP 132300 to 132900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,915 DEBUG Processing 310/698 atomic regions from SNP 92722 to 93322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,032 DEBUG Processing 411/725 atomic regions from SNP 123001 to 123601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,180 DEBUG Processing 443/740 atomic regions from SNP 132600 to 133200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,186 DEBUG Processing 311/698 atomic regions from SNP 93022 to 93622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,268 DEBUG Processing 412/725 atomic regions from SNP 123301 to 123901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,457 DEBUG Processing 444/740 atomic regions from SNP 132900 to 133500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,461 DEBUG Processing 312/698 atomic regions from SNP 93322 to 93922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,510 DEBUG Processing 413/725 atomic regions from SNP 123601 to 124201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,736 DEBUG Processing 445/740 atomic regions from SNP 133200 to 133800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,742 DEBUG Processing 313/698 atomic regions from SNP 93622 to 94222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,779 DEBUG Processing 414/725 atomic regions from SNP 123901 to 124501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,002 DEBUG Processing 446/740 atomic regions from SNP 133500 to 134100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,010 DEBUG Processing 314/698 atomic regions from SNP 93922 to 94522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,019 DEBUG Processing 415/725 atomic regions from SNP 124201 to 124801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,258 DEBUG Processing 416/725 atomic regions from SNP 124501 to 125101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,273 DEBUG Processing 447/740 atomic regions from SNP 133800 to 134400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,274 DEBUG Processing 315/698 atomic regions from SNP 94222 to 94822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,506 DEBUG Processing 417/725 atomic regions from SNP 124801 to 125401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,536 DEBUG Processing 316/698 atomic regions from SNP 94522 to 95122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,542 DEBUG Processing 448/740 atomic regions from SNP 134100 to 134700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,774 DEBUG Processing 418/725 atomic regions from SNP 125101 to 125701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,801 DEBUG Processing 317/698 atomic regions from SNP 94822 to 95422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,811 DEBUG Processing 449/740 atomic regions from SNP 134400 to 135000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,024 DEBUG Processing 419/725 atomic regions from SNP 125401 to 126001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,079 DEBUG Processing 318/698 atomic regions from SNP 95122 to 95722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,091 DEBUG Processing 450/740 atomic regions from SNP 134700 to 135300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,262 DEBUG Processing 420/725 atomic regions from SNP 125701 to 126301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,340 DEBUG Processing 319/698 atomic regions from SNP 95422 to 96022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,370 DEBUG Processing 451/740 atomic regions from SNP 135000 to 135600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,504 DEBUG Processing 421/725 atomic regions from SNP 126001 to 126601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,593 DEBUG Processing 320/698 atomic regions from SNP 95722 to 96322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,642 DEBUG Processing 452/740 atomic regions from SNP 135300 to 135900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,748 DEBUG Processing 422/725 atomic regions from SNP 126301 to 126901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,852 DEBUG Processing 321/698 atomic regions from SNP 96022 to 96622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,916 DEBUG Processing 453/740 atomic regions from SNP 135600 to 136200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,003 DEBUG Processing 423/725 atomic regions from SNP 126601 to 127201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,095 DEBUG Processing 322/698 atomic regions from SNP 96322 to 96922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,193 DEBUG Processing 454/740 atomic regions from SNP 135900 to 136500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,244 DEBUG Processing 424/725 atomic regions from SNP 126901 to 127501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,331 DEBUG Processing 323/698 atomic regions from SNP 96622 to 97222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,463 DEBUG Processing 455/740 atomic regions from SNP 136200 to 136800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,484 DEBUG Processing 425/725 atomic regions from SNP 127201 to 127801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,562 DEBUG Processing 324/698 atomic regions from SNP 96922 to 97522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,720 DEBUG Processing 456/740 atomic regions from SNP 136500 to 137100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,727 DEBUG Processing 426/725 atomic regions from SNP 127501 to 128101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,797 DEBUG Processing 325/698 atomic regions from SNP 97222 to 97822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,957 DEBUG Processing 457/740 atomic regions from SNP 136800 to 137400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,986 DEBUG Processing 427/725 atomic regions from SNP 127801 to 128401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,036 DEBUG Processing 326/698 atomic regions from SNP 97522 to 98122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,195 DEBUG Processing 458/740 atomic regions from SNP 137100 to 137700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,227 DEBUG Processing 428/725 atomic regions from SNP 128101 to 128701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,274 DEBUG Processing 327/698 atomic regions from SNP 97822 to 98422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,453 DEBUG Processing 459/740 atomic regions from SNP 137400 to 138000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,470 DEBUG Processing 429/725 atomic regions from SNP 128401 to 129001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,509 DEBUG Processing 328/698 atomic regions from SNP 98122 to 98722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,702 DEBUG Processing 460/740 atomic regions from SNP 137700 to 138300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,714 DEBUG Processing 430/725 atomic regions from SNP 128701 to 129301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,745 DEBUG Processing 329/698 atomic regions from SNP 98422 to 99022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,947 DEBUG Processing 461/740 atomic regions from SNP 138000 to 138600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,957 DEBUG Processing 431/725 atomic regions from SNP 129001 to 129601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,981 DEBUG Processing 330/698 atomic regions from SNP 98722 to 99322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,172 DEBUG Processing 462/740 atomic regions from SNP 138300 to 138900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,194 DEBUG Processing 432/725 atomic regions from SNP 129301 to 129901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,218 DEBUG Processing 331/698 atomic regions from SNP 99022 to 99622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,409 DEBUG Processing 463/740 atomic regions from SNP 138600 to 139200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,446 DEBUG Processing 433/725 atomic regions from SNP 129601 to 130201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,452 DEBUG Processing 332/698 atomic regions from SNP 99322 to 99922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,654 DEBUG Processing 464/740 atomic regions from SNP 138900 to 139500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,685 DEBUG Processing 333/698 atomic regions from SNP 99622 to 100222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,716 DEBUG Processing 434/725 atomic regions from SNP 129901 to 130501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,906 DEBUG Processing 465/740 atomic regions from SNP 139200 to 139800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,924 DEBUG Processing 334/698 atomic regions from SNP 99922 to 100522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,976 DEBUG Processing 435/725 atomic regions from SNP 130201 to 130801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,148 DEBUG Processing 466/740 atomic regions from SNP 139500 to 140100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,185 DEBUG Processing 335/698 atomic regions from SNP 100222 to 100822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,212 DEBUG Processing 436/725 atomic regions from SNP 130501 to 131101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,376 DEBUG Processing 467/740 atomic regions from SNP 139800 to 140400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,424 DEBUG Processing 336/698 atomic regions from SNP 100522 to 101122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,453 DEBUG Processing 437/725 atomic regions from SNP 130801 to 131401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,604 DEBUG Processing 468/740 atomic regions from SNP 140100 to 140700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,661 DEBUG Processing 337/698 atomic regions from SNP 100822 to 101422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,695 DEBUG Processing 438/725 atomic regions from SNP 131101 to 131701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,836 DEBUG Processing 469/740 atomic regions from SNP 140400 to 141000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,900 DEBUG Processing 338/698 atomic regions from SNP 101122 to 101722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,938 DEBUG Processing 439/725 atomic regions from SNP 131401 to 132001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,068 DEBUG Processing 470/740 atomic regions from SNP 140700 to 141300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,157 DEBUG Processing 339/698 atomic regions from SNP 101422 to 102022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,177 DEBUG Processing 440/725 atomic regions from SNP 131701 to 132301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,315 DEBUG Processing 471/740 atomic regions from SNP 141000 to 141600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,406 DEBUG Processing 340/698 atomic regions from SNP 101722 to 102322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,422 DEBUG Processing 441/725 atomic regions from SNP 132001 to 132601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,557 DEBUG Processing 472/740 atomic regions from SNP 141300 to 141900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,647 DEBUG Processing 341/698 atomic regions from SNP 102022 to 102622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,679 DEBUG Processing 442/725 atomic regions from SNP 132301 to 132901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,811 DEBUG Processing 473/740 atomic regions from SNP 141600 to 142200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,889 DEBUG Processing 342/698 atomic regions from SNP 102322 to 102922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,922 DEBUG Processing 443/725 atomic regions from SNP 132601 to 133201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,056 DEBUG Processing 474/740 atomic regions from SNP 141900 to 142500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,126 DEBUG Processing 343/698 atomic regions from SNP 102622 to 103222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,162 DEBUG Processing 444/725 atomic regions from SNP 132901 to 133501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,290 DEBUG Processing 475/740 atomic regions from SNP 142200 to 142800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,357 DEBUG Processing 344/698 atomic regions from SNP 102922 to 103522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,402 DEBUG Processing 445/725 atomic regions from SNP 133201 to 133801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,518 DEBUG Processing 476/740 atomic regions from SNP 142500 to 143100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,587 DEBUG Processing 345/698 atomic regions from SNP 103222 to 103822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,644 DEBUG Processing 446/725 atomic regions from SNP 133501 to 134101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,739 DEBUG Processing 477/740 atomic regions from SNP 142800 to 143400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,820 DEBUG Processing 346/698 atomic regions from SNP 103522 to 104122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,894 DEBUG Processing 447/725 atomic regions from SNP 133801 to 134401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,966 DEBUG Processing 478/740 atomic regions from SNP 143100 to 143700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,059 DEBUG Processing 347/698 atomic regions from SNP 103822 to 104422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,139 DEBUG Processing 448/725 atomic regions from SNP 134101 to 134701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,204 DEBUG Processing 479/740 atomic regions from SNP 143400 to 144000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,300 DEBUG Processing 348/698 atomic regions from SNP 104122 to 104722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,392 DEBUG Processing 449/725 atomic regions from SNP 134401 to 135001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,434 DEBUG Processing 480/740 atomic regions from SNP 143700 to 144300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,538 DEBUG Processing 349/698 atomic regions from SNP 104422 to 105022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,662 DEBUG Processing 481/740 atomic regions from SNP 144000 to 144600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,667 DEBUG Processing 450/725 atomic regions from SNP 134701 to 135301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,774 DEBUG Processing 350/698 atomic regions from SNP 104722 to 105322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,892 DEBUG Processing 482/740 atomic regions from SNP 144300 to 144900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,958 DEBUG Processing 451/725 atomic regions from SNP 135001 to 135601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,009 DEBUG Processing 351/698 atomic regions from SNP 105022 to 105622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,123 DEBUG Processing 483/740 atomic regions from SNP 144600 to 145200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,238 DEBUG Processing 452/725 atomic regions from SNP 135301 to 135901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,242 DEBUG Processing 352/698 atomic regions from SNP 105322 to 105922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,369 DEBUG Processing 484/740 atomic regions from SNP 144900 to 145500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,476 DEBUG Processing 353/698 atomic regions from SNP 105622 to 106222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,523 DEBUG Processing 453/725 atomic regions from SNP 135601 to 136201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,594 DEBUG Processing 485/740 atomic regions from SNP 145200 to 145800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,708 DEBUG Processing 354/698 atomic regions from SNP 105922 to 106522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,807 DEBUG Processing 454/725 atomic regions from SNP 135901 to 136501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,821 DEBUG Processing 486/740 atomic regions from SNP 145500 to 146100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,937 DEBUG Processing 355/698 atomic regions from SNP 106222 to 106822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,050 DEBUG Processing 487/740 atomic regions from SNP 145800 to 146400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,080 DEBUG Processing 455/725 atomic regions from SNP 136201 to 136801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,168 DEBUG Processing 356/698 atomic regions from SNP 106522 to 107122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,278 DEBUG Processing 488/740 atomic regions from SNP 146100 to 146700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,342 DEBUG Processing 456/725 atomic regions from SNP 136501 to 137101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,395 DEBUG Processing 357/698 atomic regions from SNP 106822 to 107422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,503 DEBUG Processing 489/740 atomic regions from SNP 146400 to 147000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,619 DEBUG Processing 457/725 atomic regions from SNP 136801 to 137401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,623 DEBUG Processing 358/698 atomic regions from SNP 107122 to 107722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,726 DEBUG Processing 490/740 atomic regions from SNP 146700 to 147300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,855 DEBUG Processing 359/698 atomic regions from SNP 107422 to 108022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,905 DEBUG Processing 458/725 atomic regions from SNP 137101 to 137701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,953 DEBUG Processing 491/740 atomic regions from SNP 147000 to 147600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,085 DEBUG Processing 360/698 atomic regions from SNP 107722 to 108322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,181 DEBUG Processing 492/740 atomic regions from SNP 147300 to 147900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,184 DEBUG Processing 459/725 atomic regions from SNP 137401 to 138001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,314 DEBUG Processing 361/698 atomic regions from SNP 108022 to 108622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,413 DEBUG Processing 493/740 atomic regions from SNP 147600 to 148200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,460 DEBUG Processing 460/725 atomic regions from SNP 137701 to 138301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,546 DEBUG Processing 362/698 atomic regions from SNP 108322 to 108922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,646 DEBUG Processing 494/740 atomic regions from SNP 147900 to 148500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,701 DEBUG Processing 461/725 atomic regions from SNP 138001 to 138601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,791 DEBUG Processing 363/698 atomic regions from SNP 108622 to 109222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,872 DEBUG Processing 495/740 atomic regions from SNP 148200 to 148800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,960 DEBUG Processing 462/725 atomic regions from SNP 138301 to 138901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,022 DEBUG Processing 364/698 atomic regions from SNP 108922 to 109522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,103 DEBUG Processing 496/740 atomic regions from SNP 148500 to 149100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,201 DEBUG Processing 463/725 atomic regions from SNP 138601 to 139201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,257 DEBUG Processing 365/698 atomic regions from SNP 109222 to 109822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,334 DEBUG Processing 497/740 atomic regions from SNP 148800 to 149400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,443 DEBUG Processing 464/725 atomic regions from SNP 138901 to 139501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,490 DEBUG Processing 366/698 atomic regions from SNP 109522 to 110122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,567 DEBUG Processing 498/740 atomic regions from SNP 149100 to 149700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,685 DEBUG Processing 465/725 atomic regions from SNP 139201 to 139801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,723 DEBUG Processing 367/698 atomic regions from SNP 109822 to 110422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,796 DEBUG Processing 499/740 atomic regions from SNP 149400 to 150000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,932 DEBUG Processing 466/725 atomic regions from SNP 139501 to 140101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,961 DEBUG Processing 368/698 atomic regions from SNP 110122 to 110722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,022 DEBUG Processing 500/740 atomic regions from SNP 149700 to 150300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,182 DEBUG Processing 467/725 atomic regions from SNP 139801 to 140401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,226 DEBUG Processing 369/698 atomic regions from SNP 110422 to 111022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,246 DEBUG Processing 501/740 atomic regions from SNP 150000 to 150600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,435 DEBUG Processing 468/725 atomic regions from SNP 140101 to 140701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,464 DEBUG Processing 370/698 atomic regions from SNP 110722 to 111322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,481 DEBUG Processing 502/740 atomic regions from SNP 150300 to 150900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,681 DEBUG Processing 469/725 atomic regions from SNP 140401 to 141001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,696 DEBUG Processing 371/698 atomic regions from SNP 111022 to 111622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,707 DEBUG Processing 503/740 atomic regions from SNP 150600 to 151200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,924 DEBUG Processing 372/698 atomic regions from SNP 111322 to 111922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,934 DEBUG Processing 504/740 atomic regions from SNP 150900 to 151500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,936 DEBUG Processing 470/725 atomic regions from SNP 140701 to 141301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,154 DEBUG Processing 373/698 atomic regions from SNP 111622 to 112222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,166 DEBUG Processing 505/740 atomic regions from SNP 151200 to 151800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,179 DEBUG Processing 471/725 atomic regions from SNP 141001 to 141601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,388 DEBUG Processing 374/698 atomic regions from SNP 111922 to 112522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,396 DEBUG Processing 506/740 atomic regions from SNP 151500 to 152100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,416 DEBUG Processing 472/725 atomic regions from SNP 141301 to 141901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,621 DEBUG Processing 375/698 atomic regions from SNP 112222 to 112822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,626 DEBUG Processing 507/740 atomic regions from SNP 151800 to 152400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,655 DEBUG Processing 473/725 atomic regions from SNP 141601 to 142201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,852 DEBUG Processing 376/698 atomic regions from SNP 112522 to 113122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,855 DEBUG Processing 508/740 atomic regions from SNP 152100 to 152700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,888 DEBUG Processing 474/725 atomic regions from SNP 141901 to 142501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,075 DEBUG Processing 509/740 atomic regions from SNP 152400 to 153000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,077 DEBUG Processing 377/698 atomic regions from SNP 112822 to 113422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,119 DEBUG Processing 475/725 atomic regions from SNP 142201 to 142801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,303 DEBUG Processing 378/698 atomic regions from SNP 113122 to 113722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,329 DEBUG Processing 510/740 atomic regions from SNP 152700 to 153300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,354 DEBUG Processing 476/725 atomic regions from SNP 142501 to 143101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,535 DEBUG Processing 379/698 atomic regions from SNP 113422 to 114022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,584 DEBUG Processing 511/740 atomic regions from SNP 153000 to 153600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,592 DEBUG Processing 477/725 atomic regions from SNP 142801 to 143401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,765 DEBUG Processing 380/698 atomic regions from SNP 113722 to 114322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,824 DEBUG Processing 512/740 atomic regions from SNP 153300 to 153900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,843 DEBUG Processing 478/725 atomic regions from SNP 143101 to 143701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,999 DEBUG Processing 381/698 atomic regions from SNP 114022 to 114622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,063 DEBUG Processing 513/740 atomic regions from SNP 153600 to 154200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,110 DEBUG Processing 479/725 atomic regions from SNP 143401 to 144001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,234 DEBUG Processing 382/698 atomic regions from SNP 114322 to 114922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,292 DEBUG Processing 514/740 atomic regions from SNP 153900 to 154500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,366 DEBUG Processing 480/725 atomic regions from SNP 143701 to 144301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,472 DEBUG Processing 383/698 atomic regions from SNP 114622 to 115222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,529 DEBUG Processing 515/740 atomic regions from SNP 154200 to 154800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,628 DEBUG Processing 481/725 atomic regions from SNP 144001 to 144601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,709 DEBUG Processing 384/698 atomic regions from SNP 114922 to 115522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,755 DEBUG Processing 516/740 atomic regions from SNP 154500 to 155100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,880 DEBUG Processing 482/725 atomic regions from SNP 144301 to 144901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,962 DEBUG Processing 385/698 atomic regions from SNP 115222 to 115822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,986 DEBUG Processing 517/740 atomic regions from SNP 154800 to 155400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,132 DEBUG Processing 483/725 atomic regions from SNP 144601 to 145201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,199 DEBUG Processing 386/698 atomic regions from SNP 115522 to 116122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,222 DEBUG Processing 518/740 atomic regions from SNP 155100 to 155700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,383 DEBUG Processing 484/725 atomic regions from SNP 144901 to 145501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,441 DEBUG Processing 387/698 atomic regions from SNP 115822 to 116422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,463 DEBUG Processing 519/740 atomic regions from SNP 155400 to 156000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,636 DEBUG Processing 485/725 atomic regions from SNP 145201 to 145801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,688 DEBUG Processing 388/698 atomic regions from SNP 116122 to 116722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,705 DEBUG Processing 520/740 atomic regions from SNP 155700 to 156300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,886 DEBUG Processing 486/725 atomic regions from SNP 145501 to 146101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,937 DEBUG Processing 389/698 atomic regions from SNP 116422 to 117022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,950 DEBUG Processing 521/740 atomic regions from SNP 156000 to 156600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,136 DEBUG Processing 487/725 atomic regions from SNP 145801 to 146401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,183 DEBUG Processing 390/698 atomic regions from SNP 116722 to 117322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,215 DEBUG Processing 522/740 atomic regions from SNP 156300 to 156900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,382 DEBUG Processing 488/725 atomic regions from SNP 146101 to 146701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,426 DEBUG Processing 391/698 atomic regions from SNP 117022 to 117622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,475 DEBUG Processing 523/740 atomic regions from SNP 156600 to 157200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,633 DEBUG Processing 489/725 atomic regions from SNP 146401 to 147001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,664 DEBUG Processing 392/698 atomic regions from SNP 117322 to 117922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,719 DEBUG Processing 524/740 atomic regions from SNP 156900 to 157500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,882 DEBUG Processing 490/725 atomic regions from SNP 146701 to 147301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,902 DEBUG Processing 393/698 atomic regions from SNP 117622 to 118222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,973 DEBUG Processing 525/740 atomic regions from SNP 157200 to 157800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,127 DEBUG Processing 491/725 atomic regions from SNP 147001 to 147601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,140 DEBUG Processing 394/698 atomic regions from SNP 117922 to 118522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,222 DEBUG Processing 526/740 atomic regions from SNP 157500 to 158100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,367 DEBUG Processing 492/725 atomic regions from SNP 147301 to 147901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,373 DEBUG Processing 395/698 atomic regions from SNP 118222 to 118822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,484 DEBUG Processing 527/740 atomic regions from SNP 157800 to 158400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,608 DEBUG Processing 396/698 atomic regions from SNP 118522 to 119122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,609 DEBUG Processing 493/725 atomic regions from SNP 147601 to 148201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,733 DEBUG Processing 528/740 atomic regions from SNP 158100 to 158700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,849 DEBUG Processing 397/698 atomic regions from SNP 118822 to 119422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,851 DEBUG Processing 494/725 atomic regions from SNP 147901 to 148501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,976 DEBUG Processing 529/740 atomic regions from SNP 158400 to 159000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,086 DEBUG Processing 398/698 atomic regions from SNP 119122 to 119722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,113 DEBUG Processing 495/725 atomic regions from SNP 148201 to 148801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,217 DEBUG Processing 530/740 atomic regions from SNP 158700 to 159300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,325 DEBUG Processing 399/698 atomic regions from SNP 119422 to 120022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,364 DEBUG Processing 496/725 atomic regions from SNP 148501 to 149101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,460 DEBUG Processing 531/740 atomic regions from SNP 159000 to 159600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,561 DEBUG Processing 400/698 atomic regions from SNP 119722 to 120322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,613 DEBUG Processing 497/725 atomic regions from SNP 148801 to 149401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,691 DEBUG Processing 532/740 atomic regions from SNP 159300 to 159900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,792 DEBUG Processing 401/698 atomic regions from SNP 120022 to 120622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,851 DEBUG Processing 498/725 atomic regions from SNP 149101 to 149701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,920 DEBUG Processing 533/740 atomic regions from SNP 159600 to 160200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,021 DEBUG Processing 402/698 atomic regions from SNP 120322 to 120922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,090 DEBUG Processing 499/725 atomic regions from SNP 149401 to 150001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,148 DEBUG Processing 534/740 atomic regions from SNP 159900 to 160500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,255 DEBUG Processing 403/698 atomic regions from SNP 120622 to 121222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,326 DEBUG Processing 500/725 atomic regions from SNP 149701 to 150301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,379 DEBUG Processing 535/740 atomic regions from SNP 160200 to 160800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,490 DEBUG Processing 404/698 atomic regions from SNP 120922 to 121522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,564 DEBUG Processing 501/725 atomic regions from SNP 150001 to 150601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,629 DEBUG Processing 536/740 atomic regions from SNP 160500 to 161100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,725 DEBUG Processing 405/698 atomic regions from SNP 121222 to 121822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,800 DEBUG Processing 502/725 atomic regions from SNP 150301 to 150901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,871 DEBUG Processing 537/740 atomic regions from SNP 160800 to 161400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,958 DEBUG Processing 406/698 atomic regions from SNP 121522 to 122122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,043 DEBUG Processing 503/725 atomic regions from SNP 150601 to 151201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,116 DEBUG Processing 538/740 atomic regions from SNP 161100 to 161700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,193 DEBUG Processing 407/698 atomic regions from SNP 121822 to 122422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,286 DEBUG Processing 504/725 atomic regions from SNP 150901 to 151501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,351 DEBUG Processing 539/740 atomic regions from SNP 161400 to 162000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,436 DEBUG Processing 408/698 atomic regions from SNP 122122 to 122722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,523 DEBUG Processing 505/725 atomic regions from SNP 151201 to 151801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,582 DEBUG Processing 540/740 atomic regions from SNP 161700 to 162300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,666 DEBUG Processing 409/698 atomic regions from SNP 122422 to 123022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,763 DEBUG Processing 506/725 atomic regions from SNP 151501 to 152101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,817 DEBUG Processing 541/740 atomic regions from SNP 162000 to 162600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,908 DEBUG Processing 410/698 atomic regions from SNP 122722 to 123322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,005 DEBUG Processing 507/725 atomic regions from SNP 151801 to 152401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,057 DEBUG Processing 542/740 atomic regions from SNP 162300 to 162900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,150 DEBUG Processing 411/698 atomic regions from SNP 123022 to 123622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,251 DEBUG Processing 508/725 atomic regions from SNP 152101 to 152701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,294 DEBUG Processing 543/740 atomic regions from SNP 162600 to 163200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,374 DEBUG Processing 412/698 atomic regions from SNP 123322 to 123922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,493 DEBUG Processing 509/725 atomic regions from SNP 152401 to 153001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,557 DEBUG Processing 544/740 atomic regions from SNP 162900 to 163500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,628 DEBUG Processing 413/698 atomic regions from SNP 123622 to 124222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,736 DEBUG Processing 510/725 atomic regions from SNP 152701 to 153301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,806 DEBUG Processing 545/740 atomic regions from SNP 163200 to 163800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,871 DEBUG Processing 414/698 atomic regions from SNP 123922 to 124522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,956 DEBUG Subchromosome time: 284.52806305885315, subchromosome SNPs: 254139 2025-01-31 09:53:45,956 DEBUG Estimated BADs: [1.00, 2.01, 4.01, 0.33, 1.00, 2.01, 0.67, 6.02, 4.01, 0.40, 2.01, 8.03, 2.01, 0.40, 4.01, 2.01, 8.03, 1.00, 4.01, 0.67, 6.02, 2.01, 0.33, 2.01, 12.04, 2.01, 6.02, 2.01, 0.50, 2.01, 0.29, 1.00, 12.04, 4.01, 6.02, 1.00, 14.05, 4.01, 0.50, 2.01, 8.03, 2.01, 8.03, 1.00, 2.01] SNP counts: [2327, 5516, 2547, 3217, 10910, 2308, 15424, 4088, 10172, 909, 3283, 2138, 7784, 5359, 3393, 13869, 433, 16444, 1598, 4122, 3394, 2695, 11378, 3403, 1212, 2734, 12514, 17660, 10200, 2379, 3609, 2839, 1677, 9900, 6531, 2044, 1641, 8085, 5365, 1839, 1199, 2490, 650, 10412, 12448] SNP IDs counts: [2327, 5516, 2547, 3217, 10910, 2308, 15424, 4088, 10172, 909, 3283, 2138, 7784, 5359, 3393, 13869, 433, 16444, 1598, 4122, 3394, 2695, 11378, 3403, 1212, 2734, 12514, 17660, 10200, 2379, 3609, 2839, 1677, 9900, 6531, 2044, 1641, 8085, 5365, 1839, 1199, 2490, 650, 10412, 12448] Critical gap: 667777bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 4.54Mbp, 7.67Mbp, 9.10Mbp, 11.13Mbp, 17.63Mbp, 18.94Mbp, 28.21Mbp, 30.36Mbp, 35.95Mbp, 36.51Mbp, 38.29Mbp, 39.41Mbp, 43.95Mbp, 47.19Mbp, 49.21Mbp, 56.69Mbp, 56.93Mbp, 66.96Mbp, 67.91Mbp, 70.73Mbp, 72.53Mbp, 74.05Mbp, 81.04Mbp, 83.00Mbp, 83.63Mbp, 85.12Mbp, 91.94Mbp, 101.53Mbp, 107.60Mbp, 108.97Mbp, 111.22Mbp, 112.84Mbp, 113.71Mbp, 119.22Mbp, 122.83Mbp, 124.36Mbp, 125.26Mbp, 129.63Mbp, 133.46Mbp, 134.56Mbp, 135.19Mbp, 136.52Mbp, 136.86Mbp, 142.75Mbp, 149.74Mbp] 2025-01-31 09:53:45,956 DEBUG chr6 time: 284.52868957072496 s 2025-01-31 09:53:45,979 DEBUG Processing 511/725 atomic regions from SNP 153001 to 153601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,042 DEBUG Processing 546/740 atomic regions from SNP 163500 to 164100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,125 DEBUG chr6: Fitting background model for 45 segments 2025-01-31 09:53:46,126 DEBUG Processing 415/698 atomic regions from SNP 124222 to 124822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,226 DEBUG Processing 512/725 atomic regions from SNP 153301 to 153901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,281 DEBUG Processing 547/740 atomic regions from SNP 163800 to 164400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,377 DEBUG Processing 416/698 atomic regions from SNP 124522 to 125122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,473 DEBUG Processing 513/725 atomic regions from SNP 153601 to 154201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,518 DEBUG Processing 548/740 atomic regions from SNP 164100 to 164700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,630 DEBUG Processing 417/698 atomic regions from SNP 124822 to 125422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,739 DEBUG Processing 514/725 atomic regions from SNP 153901 to 154501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,750 DEBUG Processing 549/740 atomic regions from SNP 164400 to 165000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,867 DEBUG Processing 418/698 atomic regions from SNP 125122 to 125722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,982 DEBUG Processing 550/740 atomic regions from SNP 164700 to 165300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,008 DEBUG Processing 515/725 atomic regions from SNP 154201 to 154801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,113 DEBUG Processing 419/698 atomic regions from SNP 125422 to 126022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,209 DEBUG Processing 551/740 atomic regions from SNP 165000 to 165600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,276 DEBUG Processing 516/725 atomic regions from SNP 154501 to 155101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,371 DEBUG Processing 420/698 atomic regions from SNP 125722 to 126322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,445 DEBUG Processing 552/740 atomic regions from SNP 165300 to 165900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,544 DEBUG Processing 517/725 atomic regions from SNP 154801 to 155401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,613 DEBUG Processing 421/698 atomic regions from SNP 126022 to 126622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,687 DEBUG Processing 553/740 atomic regions from SNP 165600 to 166200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,827 DEBUG Processing 518/725 atomic regions from SNP 155101 to 155701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,870 DEBUG Processing 422/698 atomic regions from SNP 126322 to 126922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,928 DEBUG Processing 554/740 atomic regions from SNP 165900 to 166500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,090 DEBUG Processing 519/725 atomic regions from SNP 155401 to 156001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,127 DEBUG Processing 423/698 atomic regions from SNP 126622 to 127222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,168 DEBUG Processing 555/740 atomic regions from SNP 166200 to 166800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,373 DEBUG Processing 520/725 atomic regions from SNP 155701 to 156301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,402 DEBUG Processing 424/698 atomic regions from SNP 126922 to 127522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,410 DEBUG Processing 556/740 atomic regions from SNP 166500 to 167100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,656 DEBUG Processing 521/725 atomic regions from SNP 156001 to 156601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,667 DEBUG Processing 425/698 atomic regions from SNP 127222 to 127822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,671 DEBUG Processing 557/740 atomic regions from SNP 166800 to 167400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,924 DEBUG Processing 426/698 atomic regions from SNP 127522 to 128122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,924 DEBUG Processing 522/725 atomic regions from SNP 156301 to 156901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:48,937 DEBUG Processing 558/740 atomic regions from SNP 167100 to 167700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,175 DEBUG Processing 427/698 atomic regions from SNP 127822 to 128422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,178 DEBUG Processing 559/740 atomic regions from SNP 167400 to 168000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,201 DEBUG Processing 523/725 atomic regions from SNP 156601 to 157201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,413 DEBUG Processing 560/740 atomic regions from SNP 167700 to 168300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,421 DEBUG Processing 428/698 atomic regions from SNP 128122 to 128722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,459 DEBUG Processing 524/725 atomic regions from SNP 156901 to 157501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,650 DEBUG Processing 561/740 atomic regions from SNP 168000 to 168600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,665 DEBUG Processing 429/698 atomic regions from SNP 128422 to 129022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,726 DEBUG Processing 525/725 atomic regions from SNP 157201 to 157801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:49,897 DEBUG Processing 562/740 atomic regions from SNP 168300 to 168900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,929 DEBUG Processing 430/698 atomic regions from SNP 128722 to 129322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,994 DEBUG Processing 526/725 atomic regions from SNP 157501 to 158101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,135 DEBUG Processing 563/740 atomic regions from SNP 168600 to 169200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,209 DEBUG Processing 431/698 atomic regions from SNP 129022 to 129622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,245 DEBUG Processing 527/725 atomic regions from SNP 157801 to 158401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,387 DEBUG Processing 564/740 atomic regions from SNP 168900 to 169500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,487 DEBUG Processing 432/698 atomic regions from SNP 129322 to 129922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,498 DEBUG Processing 528/725 atomic regions from SNP 158101 to 158701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,624 DEBUG Processing 565/740 atomic regions from SNP 169200 to 169800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,744 DEBUG Processing 529/725 atomic regions from SNP 158401 to 159001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:50,761 DEBUG Processing 433/698 atomic regions from SNP 129622 to 130222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,865 DEBUG Processing 566/740 atomic regions from SNP 169500 to 170100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,991 DEBUG Processing 530/725 atomic regions from SNP 158701 to 159301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,014 DEBUG Processing 434/698 atomic regions from SNP 129922 to 130522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,096 DEBUG Processing 567/740 atomic regions from SNP 169800 to 170400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,228 DEBUG Processing 531/725 atomic regions from SNP 159001 to 159601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,255 DEBUG Processing 435/698 atomic regions from SNP 130222 to 130822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,319 DEBUG Processing 568/740 atomic regions from SNP 170100 to 170700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,471 DEBUG Processing 532/725 atomic regions from SNP 159301 to 159901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,516 DEBUG Processing 436/698 atomic regions from SNP 130522 to 131122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,552 DEBUG Processing 569/740 atomic regions from SNP 170400 to 171000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,716 DEBUG Processing 533/725 atomic regions from SNP 159601 to 160201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:51,768 DEBUG Processing 437/698 atomic regions from SNP 130822 to 131422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,789 DEBUG Processing 570/740 atomic regions from SNP 170700 to 171300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,959 DEBUG Processing 534/725 atomic regions from SNP 159901 to 160501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,020 DEBUG Processing 571/740 atomic regions from SNP 171000 to 171600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,023 DEBUG Processing 438/698 atomic regions from SNP 131122 to 131722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,231 DEBUG Processing 535/725 atomic regions from SNP 160201 to 160801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,270 DEBUG Processing 572/740 atomic regions from SNP 171300 to 171900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,312 DEBUG Processing 439/698 atomic regions from SNP 131422 to 132022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,472 DEBUG Processing 536/725 atomic regions from SNP 160501 to 161101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,498 DEBUG Processing 573/740 atomic regions from SNP 171600 to 172200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,563 DEBUG Processing 440/698 atomic regions from SNP 131722 to 132322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,710 DEBUG Processing 537/725 atomic regions from SNP 160801 to 161401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:52,722 DEBUG Processing 574/740 atomic regions from SNP 171900 to 172500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,823 DEBUG Processing 441/698 atomic regions from SNP 132022 to 132622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,954 DEBUG Processing 575/740 atomic regions from SNP 172200 to 172800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,954 DEBUG Processing 538/725 atomic regions from SNP 161101 to 161701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,085 DEBUG Processing 442/698 atomic regions from SNP 132322 to 132922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,189 DEBUG Processing 576/740 atomic regions from SNP 172500 to 173100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,203 DEBUG Processing 539/725 atomic regions from SNP 161401 to 162001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,323 DEBUG Processing 443/698 atomic regions from SNP 132622 to 133222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,419 DEBUG Processing 577/740 atomic regions from SNP 172800 to 173400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,450 DEBUG Processing 540/725 atomic regions from SNP 161701 to 162301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,554 DEBUG Processing 444/698 atomic regions from SNP 132922 to 133522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,647 DEBUG Processing 578/740 atomic regions from SNP 173100 to 173700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,695 DEBUG Processing 541/725 atomic regions from SNP 162001 to 162601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:53,781 DEBUG Processing 445/698 atomic regions from SNP 133222 to 133822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,878 DEBUG Processing 579/740 atomic regions from SNP 173400 to 174000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:53,942 DEBUG Processing 542/725 atomic regions from SNP 162301 to 162901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,010 DEBUG Processing 446/698 atomic regions from SNP 133522 to 134122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,108 DEBUG Processing 580/740 atomic regions from SNP 173700 to 174300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,178 DEBUG Processing 543/725 atomic regions from SNP 162601 to 163201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,237 DEBUG Processing 447/698 atomic regions from SNP 133822 to 134422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,337 DEBUG Processing 581/740 atomic regions from SNP 174000 to 174600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,416 DEBUG Processing 544/725 atomic regions from SNP 162901 to 163501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,464 DEBUG Processing 448/698 atomic regions from SNP 134122 to 134722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,569 DEBUG Processing 582/740 atomic regions from SNP 174300 to 174900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,660 DEBUG Processing 545/725 atomic regions from SNP 163201 to 163801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,697 DEBUG Processing 449/698 atomic regions from SNP 134422 to 135022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,802 DEBUG Processing 583/740 atomic regions from SNP 174600 to 175200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:54,898 DEBUG Processing 546/725 atomic regions from SNP 163501 to 164101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:54,929 DEBUG Processing 450/698 atomic regions from SNP 134722 to 135322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,023 DEBUG Processing 584/740 atomic regions from SNP 174900 to 175500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,137 DEBUG Processing 547/725 atomic regions from SNP 163801 to 164401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,166 DEBUG Processing 451/698 atomic regions from SNP 135022 to 135622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,251 DEBUG Processing 585/740 atomic regions from SNP 175200 to 175800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,369 DEBUG Processing 548/725 atomic regions from SNP 164101 to 164701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,395 DEBUG Processing 452/698 atomic regions from SNP 135322 to 135922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,482 DEBUG Processing 586/740 atomic regions from SNP 175500 to 176100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,606 DEBUG Processing 549/725 atomic regions from SNP 164401 to 165001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,626 DEBUG Processing 453/698 atomic regions from SNP 135622 to 136222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,713 DEBUG Processing 587/740 atomic regions from SNP 175800 to 176400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:55,855 DEBUG Processing 550/725 atomic regions from SNP 164701 to 165301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:55,860 DEBUG Processing 454/698 atomic regions from SNP 135922 to 136522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,952 DEBUG Processing 588/740 atomic regions from SNP 176100 to 176700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,100 DEBUG Processing 551/725 atomic regions from SNP 165001 to 165601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,101 DEBUG Processing 455/698 atomic regions from SNP 136222 to 136822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,201 DEBUG Processing 589/740 atomic regions from SNP 176400 to 177000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,353 DEBUG Processing 456/698 atomic regions from SNP 136522 to 137122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,366 DEBUG Processing 552/725 atomic regions from SNP 165301 to 165901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,441 DEBUG Processing 590/740 atomic regions from SNP 176700 to 177300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,593 DEBUG Processing 457/698 atomic regions from SNP 136822 to 137422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,619 DEBUG Processing 553/725 atomic regions from SNP 165601 to 166201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,677 DEBUG Processing 591/740 atomic regions from SNP 177000 to 177600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:56,829 DEBUG Processing 458/698 atomic regions from SNP 137122 to 137722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,855 DEBUG Processing 554/725 atomic regions from SNP 165901 to 166501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:56,907 DEBUG Processing 592/740 atomic regions from SNP 177300 to 177900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,074 DEBUG Processing 459/698 atomic regions from SNP 137422 to 138022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,095 DEBUG Processing 555/725 atomic regions from SNP 166201 to 166801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,137 DEBUG Processing 593/740 atomic regions from SNP 177600 to 178200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,326 DEBUG Processing 460/698 atomic regions from SNP 137722 to 138322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,328 DEBUG Processing 556/725 atomic regions from SNP 166501 to 167101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,373 DEBUG Processing 594/740 atomic regions from SNP 177900 to 178500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,567 DEBUG Processing 461/698 atomic regions from SNP 138022 to 138622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,571 DEBUG Processing 557/725 atomic regions from SNP 166801 to 167401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,617 DEBUG Processing 595/740 atomic regions from SNP 178200 to 178800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:57,824 DEBUG Processing 462/698 atomic regions from SNP 138322 to 138922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,834 DEBUG Processing 558/725 atomic regions from SNP 167101 to 167701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:57,880 DEBUG Processing 596/740 atomic regions from SNP 178500 to 179100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,080 DEBUG Processing 463/698 atomic regions from SNP 138622 to 139222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,096 DEBUG Processing 559/725 atomic regions from SNP 167401 to 168001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:58,125 DEBUG Processing 597/740 atomic regions from SNP 178800 to 179400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,319 DEBUG Processing 464/698 atomic regions from SNP 138922 to 139522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,346 DEBUG Processing 560/725 atomic regions from SNP 167701 to 168301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:58,357 DEBUG Processing 598/740 atomic regions from SNP 179100 to 179700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,555 DEBUG Processing 465/698 atomic regions from SNP 139222 to 139822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,590 DEBUG Processing 599/740 atomic regions from SNP 179400 to 180000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,593 DEBUG Processing 561/725 atomic regions from SNP 168001 to 168601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:58,789 DEBUG Processing 466/698 atomic regions from SNP 139522 to 140122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:58,821 DEBUG Processing 600/740 atomic regions from SNP 179700 to 180300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:58,838 DEBUG Processing 562/725 atomic regions from SNP 168301 to 168901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,017 DEBUG Processing 467/698 atomic regions from SNP 139822 to 140422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,056 DEBUG Processing 601/740 atomic regions from SNP 180000 to 180600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,076 DEBUG Processing 563/725 atomic regions from SNP 168601 to 169201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,245 DEBUG Processing 468/698 atomic regions from SNP 140122 to 140722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,287 DEBUG Processing 602/740 atomic regions from SNP 180300 to 180900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,314 DEBUG Processing 564/725 atomic regions from SNP 168901 to 169501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,471 DEBUG Processing 469/698 atomic regions from SNP 140422 to 141022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,521 DEBUG Processing 603/740 atomic regions from SNP 180600 to 181200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,553 DEBUG Processing 565/725 atomic regions from SNP 169201 to 169801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,693 DEBUG Processing 470/698 atomic regions from SNP 140722 to 141322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,754 DEBUG Processing 604/740 atomic regions from SNP 180900 to 181500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:59,791 DEBUG Processing 566/725 atomic regions from SNP 169501 to 170101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:59,927 DEBUG Processing 471/698 atomic regions from SNP 141022 to 141622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:59,989 DEBUG Processing 605/740 atomic regions from SNP 181200 to 181800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,033 DEBUG Processing 567/725 atomic regions from SNP 169801 to 170401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,161 DEBUG Processing 472/698 atomic regions from SNP 141322 to 141922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,237 DEBUG Processing 606/740 atomic regions from SNP 181500 to 182100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,288 DEBUG Processing 568/725 atomic regions from SNP 170101 to 170701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,381 DEBUG Processing 473/698 atomic regions from SNP 141622 to 142222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,471 DEBUG Processing 607/740 atomic regions from SNP 181800 to 182400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,526 DEBUG Processing 569/725 atomic regions from SNP 170401 to 171001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,602 DEBUG Processing 474/698 atomic regions from SNP 141922 to 142522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,700 DEBUG Processing 608/740 atomic regions from SNP 182100 to 182700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:00,775 DEBUG Processing 570/725 atomic regions from SNP 170701 to 171301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:00,833 DEBUG Processing 475/698 atomic regions from SNP 142222 to 142822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:00,930 DEBUG Processing 609/740 atomic regions from SNP 182400 to 183000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,026 DEBUG Processing 571/725 atomic regions from SNP 171001 to 171601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,094 DEBUG Processing 476/698 atomic regions from SNP 142522 to 143122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:01,158 DEBUG Processing 610/740 atomic regions from SNP 182700 to 183300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,275 DEBUG Processing 572/725 atomic regions from SNP 171301 to 171901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,346 DEBUG Processing 477/698 atomic regions from SNP 142822 to 143422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:01,387 DEBUG Processing 611/740 atomic regions from SNP 183000 to 183600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,520 DEBUG Processing 573/725 atomic regions from SNP 171601 to 172201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,581 DEBUG Processing 478/698 atomic regions from SNP 143122 to 143722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:01,617 DEBUG Processing 612/740 atomic regions from SNP 183300 to 183900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:01,771 DEBUG Processing 574/725 atomic regions from SNP 171901 to 172501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:01,834 DEBUG Processing 479/698 atomic regions from SNP 143422 to 144022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:01,859 DEBUG Processing 613/740 atomic regions from SNP 183600 to 184200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,015 DEBUG Processing 575/725 atomic regions from SNP 172201 to 172801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,092 DEBUG Processing 480/698 atomic regions from SNP 143722 to 144322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:02,096 DEBUG Processing 614/740 atomic regions from SNP 183900 to 184500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,278 DEBUG Processing 576/725 atomic regions from SNP 172501 to 173101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,333 DEBUG Processing 615/740 atomic regions from SNP 184200 to 184800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,355 DEBUG Processing 481/698 atomic regions from SNP 144022 to 144622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:02,516 DEBUG Processing 577/725 atomic regions from SNP 172801 to 173401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,570 DEBUG Processing 616/740 atomic regions from SNP 184500 to 185100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,614 DEBUG Processing 482/698 atomic regions from SNP 144322 to 144922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:02,756 DEBUG Processing 578/725 atomic regions from SNP 173101 to 173701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:02,804 DEBUG Processing 617/740 atomic regions from SNP 184800 to 185400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:02,870 DEBUG Processing 483/698 atomic regions from SNP 144622 to 145222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:03,009 DEBUG Processing 579/725 atomic regions from SNP 173401 to 174001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,031 DEBUG Processing 618/740 atomic regions from SNP 185100 to 185700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,103 DEBUG Processing 484/698 atomic regions from SNP 144922 to 145522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:03,265 DEBUG Processing 619/740 atomic regions from SNP 185400 to 186000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,284 DEBUG Processing 580/725 atomic regions from SNP 173701 to 174301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,342 DEBUG Processing 485/698 atomic regions from SNP 145222 to 145822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:03,508 DEBUG Processing 620/740 atomic regions from SNP 185700 to 186300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,569 DEBUG Processing 581/725 atomic regions from SNP 174001 to 174601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,601 DEBUG Processing 486/698 atomic regions from SNP 145522 to 146122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:03,742 DEBUG Processing 621/740 atomic regions from SNP 186000 to 186600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:03,846 DEBUG Processing 582/725 atomic regions from SNP 174301 to 174901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:03,861 DEBUG Processing 487/698 atomic regions from SNP 145822 to 146422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:03,977 DEBUG Processing 622/740 atomic regions from SNP 186300 to 186900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,113 DEBUG Processing 488/698 atomic regions from SNP 146122 to 146722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:04,125 DEBUG Processing 583/725 atomic regions from SNP 174601 to 175201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:04,208 DEBUG Processing 623/740 atomic regions from SNP 186600 to 187200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,367 DEBUG Processing 489/698 atomic regions from SNP 146422 to 147022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:04,400 DEBUG Processing 584/725 atomic regions from SNP 174901 to 175501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:04,439 DEBUG Processing 624/740 atomic regions from SNP 186900 to 187500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,607 DEBUG Processing 490/698 atomic regions from SNP 146722 to 147322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:04,678 DEBUG Processing 585/725 atomic regions from SNP 175201 to 175801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:04,679 DEBUG Processing 625/740 atomic regions from SNP 187200 to 187800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,852 DEBUG Processing 491/698 atomic regions from SNP 147022 to 147622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:04,924 DEBUG Processing 626/740 atomic regions from SNP 187500 to 188100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:04,944 DEBUG Processing 586/725 atomic regions from SNP 175501 to 176101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,097 DEBUG Processing 492/698 atomic regions from SNP 147322 to 147922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:05,161 DEBUG Processing 627/740 atomic regions from SNP 187800 to 188400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,189 DEBUG Processing 587/725 atomic regions from SNP 175801 to 176401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,333 DEBUG Processing 493/698 atomic regions from SNP 147622 to 148222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:05,402 DEBUG Processing 628/740 atomic regions from SNP 188100 to 188700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,429 DEBUG Processing 588/725 atomic regions from SNP 176101 to 176701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,569 DEBUG Processing 494/698 atomic regions from SNP 147922 to 148522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:05,641 DEBUG Processing 629/740 atomic regions from SNP 188400 to 189000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,673 DEBUG Processing 589/725 atomic regions from SNP 176401 to 177001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:05,809 DEBUG Processing 495/698 atomic regions from SNP 148222 to 148822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:05,882 DEBUG Processing 630/740 atomic regions from SNP 188700 to 189300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:05,944 DEBUG Processing 590/725 atomic regions from SNP 176701 to 177301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,049 DEBUG Processing 496/698 atomic regions from SNP 148522 to 149122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:06,124 DEBUG Processing 631/740 atomic regions from SNP 189000 to 189600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:06,220 DEBUG Processing 591/725 atomic regions from SNP 177001 to 177601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,289 DEBUG Processing 497/698 atomic regions from SNP 148822 to 149422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:06,358 DEBUG Processing 632/740 atomic regions from SNP 189300 to 189900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:06,488 DEBUG Processing 592/725 atomic regions from SNP 177301 to 177901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,532 DEBUG Processing 498/698 atomic regions from SNP 149122 to 149722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:06,594 DEBUG Processing 633/740 atomic regions from SNP 189600 to 190200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:06,767 DEBUG Processing 593/725 atomic regions from SNP 177601 to 178201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:06,774 DEBUG Processing 499/698 atomic regions from SNP 149422 to 150022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:06,830 DEBUG Processing 634/740 atomic regions from SNP 189900 to 190500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,014 DEBUG Processing 500/698 atomic regions from SNP 149722 to 150322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:07,029 DEBUG Processing 594/725 atomic regions from SNP 177901 to 178501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,065 DEBUG Processing 635/740 atomic regions from SNP 190200 to 190800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,245 DEBUG Processing 501/698 atomic regions from SNP 150022 to 150622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:07,271 DEBUG Processing 595/725 atomic regions from SNP 178201 to 178801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,298 DEBUG Processing 636/740 atomic regions from SNP 190500 to 191100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,479 DEBUG Processing 502/698 atomic regions from SNP 150322 to 150922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:07,521 DEBUG Processing 596/725 atomic regions from SNP 178501 to 179101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,538 DEBUG Processing 637/740 atomic regions from SNP 190800 to 191400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,717 DEBUG Processing 503/698 atomic regions from SNP 150622 to 151222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:07,763 DEBUG Processing 597/725 atomic regions from SNP 178801 to 179401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:07,774 DEBUG Processing 638/740 atomic regions from SNP 191100 to 191700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:07,951 DEBUG Processing 504/698 atomic regions from SNP 150922 to 151522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:08,011 DEBUG Processing 639/740 atomic regions from SNP 191400 to 192000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,016 DEBUG Processing 598/725 atomic regions from SNP 179101 to 179701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,180 DEBUG Processing 505/698 atomic regions from SNP 151222 to 151822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:08,248 DEBUG Processing 640/740 atomic regions from SNP 191700 to 192300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,255 DEBUG Processing 599/725 atomic regions from SNP 179401 to 180001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,409 DEBUG Processing 506/698 atomic regions from SNP 151522 to 152122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:08,483 DEBUG Processing 641/740 atomic regions from SNP 192000 to 192600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,486 DEBUG Processing 600/725 atomic regions from SNP 179701 to 180301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,638 DEBUG Processing 507/698 atomic regions from SNP 151822 to 152422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:08,714 DEBUG Processing 642/740 atomic regions from SNP 192300 to 192900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:08,718 DEBUG Processing 601/725 atomic regions from SNP 180001 to 180601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,864 DEBUG Processing 508/698 atomic regions from SNP 152122 to 152722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:08,943 DEBUG Processing 602/725 atomic regions from SNP 180301 to 180901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:08,944 DEBUG Processing 643/740 atomic regions from SNP 192600 to 193200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,104 DEBUG Processing 509/698 atomic regions from SNP 152422 to 153022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:09,166 DEBUG Processing 603/725 atomic regions from SNP 180601 to 181201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,178 DEBUG Processing 644/740 atomic regions from SNP 192900 to 193500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,333 DEBUG Processing 510/698 atomic regions from SNP 152722 to 153322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:09,393 DEBUG Processing 604/725 atomic regions from SNP 180901 to 181501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,417 DEBUG Processing 645/740 atomic regions from SNP 193200 to 193800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,560 DEBUG Processing 511/698 atomic regions from SNP 153022 to 153622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:09,614 DEBUG Processing 605/725 atomic regions from SNP 181201 to 181801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,658 DEBUG Processing 646/740 atomic regions from SNP 193500 to 194100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:09,786 DEBUG Processing 512/698 atomic regions from SNP 153322 to 153922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:09,854 DEBUG Processing 606/725 atomic regions from SNP 181501 to 182101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:09,892 DEBUG Processing 647/740 atomic regions from SNP 193800 to 194400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,016 DEBUG Processing 513/698 atomic regions from SNP 153622 to 154222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:10,117 DEBUG Processing 607/725 atomic regions from SNP 181801 to 182401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,119 DEBUG Processing 648/740 atomic regions from SNP 194100 to 194700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,247 DEBUG Processing 514/698 atomic regions from SNP 153922 to 154522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:10,337 DEBUG Processing 649/740 atomic regions from SNP 194400 to 195000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,363 DEBUG Processing 608/725 atomic regions from SNP 182101 to 182701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,476 DEBUG Processing 515/698 atomic regions from SNP 154222 to 154822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:10,553 DEBUG Processing 650/740 atomic regions from SNP 194700 to 195300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,592 DEBUG Processing 609/725 atomic regions from SNP 182401 to 183001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,705 DEBUG Processing 516/698 atomic regions from SNP 154522 to 155122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:10,789 DEBUG Processing 651/740 atomic regions from SNP 195000 to 195600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:10,819 DEBUG Processing 610/725 atomic regions from SNP 182701 to 183301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:10,933 DEBUG Processing 517/698 atomic regions from SNP 154822 to 155422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:11,027 DEBUG Processing 652/740 atomic regions from SNP 195300 to 195900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,047 DEBUG Processing 611/725 atomic regions from SNP 183001 to 183601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,163 DEBUG Processing 518/698 atomic regions from SNP 155122 to 155722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:11,252 DEBUG Processing 653/740 atomic regions from SNP 195600 to 196200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,272 DEBUG Processing 612/725 atomic regions from SNP 183301 to 183901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,417 DEBUG Processing 519/698 atomic regions from SNP 155422 to 156022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:11,477 DEBUG Processing 654/740 atomic regions from SNP 195900 to 196500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,508 DEBUG Processing 613/725 atomic regions from SNP 183601 to 184201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,673 DEBUG Processing 520/698 atomic regions from SNP 155722 to 156322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:11,708 DEBUG Processing 655/740 atomic regions from SNP 196200 to 196800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:11,760 DEBUG Processing 614/725 atomic regions from SNP 183901 to 184501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:11,924 DEBUG Processing 521/698 atomic regions from SNP 156022 to 156622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:11,931 DEBUG Processing 656/740 atomic regions from SNP 196500 to 197100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:12,023 DEBUG Processing 615/725 atomic regions from SNP 184201 to 184801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,149 DEBUG Processing 522/698 atomic regions from SNP 156322 to 156922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:12,153 DEBUG Processing 657/740 atomic regions from SNP 196800 to 197400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:12,288 DEBUG Processing 616/725 atomic regions from SNP 184501 to 185101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,374 DEBUG Processing 523/698 atomic regions from SNP 156622 to 157222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:12,379 DEBUG Processing 658/740 atomic regions from SNP 197100 to 197700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:12,533 DEBUG Processing 617/725 atomic regions from SNP 184801 to 185401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,598 DEBUG Processing 659/740 atomic regions from SNP 197400 to 198000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:12,599 DEBUG Processing 524/698 atomic regions from SNP 156922 to 157522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:12,786 DEBUG Processing 618/725 atomic regions from SNP 185101 to 185701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:12,825 DEBUG Processing 660/740 atomic regions from SNP 197700 to 198300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:12,825 DEBUG Processing 525/698 atomic regions from SNP 157222 to 157822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:13,040 DEBUG Processing 619/725 atomic regions from SNP 185401 to 186001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,056 DEBUG Processing 526/698 atomic regions from SNP 157522 to 158122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:13,068 DEBUG Processing 661/740 atomic regions from SNP 198000 to 198600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:13,291 DEBUG Processing 527/698 atomic regions from SNP 157822 to 158422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:13,300 DEBUG Processing 620/725 atomic regions from SNP 185701 to 186301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,332 DEBUG Processing 662/740 atomic regions from SNP 198300 to 198900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:13,524 DEBUG Processing 528/698 atomic regions from SNP 158122 to 158722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:13,571 DEBUG Processing 621/725 atomic regions from SNP 186001 to 186601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,576 DEBUG Processing 663/740 atomic regions from SNP 198600 to 199200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:13,761 DEBUG Processing 529/698 atomic regions from SNP 158422 to 159022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:13,817 DEBUG Processing 664/740 atomic regions from SNP 198900 to 199500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:13,835 DEBUG Processing 622/725 atomic regions from SNP 186301 to 186901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:13,992 DEBUG Processing 530/698 atomic regions from SNP 158722 to 159322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:14,057 DEBUG Processing 665/740 atomic regions from SNP 199200 to 199800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:14,067 DEBUG Processing 623/725 atomic regions from SNP 186601 to 187201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,216 DEBUG Processing 531/698 atomic regions from SNP 159022 to 159622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:14,303 DEBUG Processing 624/725 atomic regions from SNP 186901 to 187501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,316 DEBUG Processing 666/740 atomic regions from SNP 199500 to 200100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:14,439 DEBUG Processing 532/698 atomic regions from SNP 159322 to 159922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:14,545 DEBUG Processing 625/725 atomic regions from SNP 187201 to 187801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,555 DEBUG Processing 667/740 atomic regions from SNP 199800 to 200400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:14,669 DEBUG Processing 533/698 atomic regions from SNP 159622 to 160222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:14,783 DEBUG Processing 626/725 atomic regions from SNP 187501 to 188101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:14,788 DEBUG Processing 668/740 atomic regions from SNP 200100 to 200700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:14,893 DEBUG Processing 534/698 atomic regions from SNP 159922 to 160522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:15,017 DEBUG Processing 669/740 atomic regions from SNP 200400 to 201000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:15,025 DEBUG Processing 627/725 atomic regions from SNP 187801 to 188401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,135 DEBUG Processing 535/698 atomic regions from SNP 160222 to 160822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:15,244 DEBUG Processing 670/740 atomic regions from SNP 200700 to 201300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:15,263 DEBUG Processing 628/725 atomic regions from SNP 188101 to 188701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,390 DEBUG Processing 536/698 atomic regions from SNP 160522 to 161122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:15,476 DEBUG Processing 671/740 atomic regions from SNP 201000 to 201600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:15,510 DEBUG Processing 629/725 atomic regions from SNP 188401 to 189001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,623 DEBUG Processing 537/698 atomic regions from SNP 160822 to 161422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:15,706 DEBUG Processing 672/740 atomic regions from SNP 201300 to 201900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:15,751 DEBUG Processing 630/725 atomic regions from SNP 188701 to 189301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:15,850 DEBUG Processing 538/698 atomic regions from SNP 161122 to 161722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:15,953 DEBUG Processing 673/740 atomic regions from SNP 201600 to 202200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:15,991 DEBUG Processing 631/725 atomic regions from SNP 189001 to 189601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,072 DEBUG Processing 539/698 atomic regions from SNP 161422 to 162022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:16,214 DEBUG Processing 674/740 atomic regions from SNP 201900 to 202500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:16,225 DEBUG Processing 632/725 atomic regions from SNP 189301 to 189901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,297 DEBUG Processing 540/698 atomic regions from SNP 161722 to 162322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:16,440 DEBUG Processing 675/740 atomic regions from SNP 202200 to 202800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:16,455 DEBUG Processing 633/725 atomic regions from SNP 189601 to 190201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,529 DEBUG Processing 541/698 atomic regions from SNP 162022 to 162622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:16,666 DEBUG Processing 676/740 atomic regions from SNP 202500 to 203100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:16,684 DEBUG Processing 634/725 atomic regions from SNP 189901 to 190501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,760 DEBUG Processing 542/698 atomic regions from SNP 162322 to 162922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:16,890 DEBUG Processing 677/740 atomic regions from SNP 202800 to 203400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:16,914 DEBUG Processing 635/725 atomic regions from SNP 190201 to 190801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:16,993 DEBUG Processing 543/698 atomic regions from SNP 162622 to 163222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:17,104 DEBUG Processing 678/740 atomic regions from SNP 203100 to 203700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:17,136 DEBUG Processing 636/725 atomic regions from SNP 190501 to 191101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,229 DEBUG Processing 544/698 atomic regions from SNP 162922 to 163522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:17,325 DEBUG Processing 679/740 atomic regions from SNP 203400 to 204000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:17,367 DEBUG Processing 637/725 atomic regions from SNP 190801 to 191401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,456 DEBUG Processing 545/698 atomic regions from SNP 163222 to 163822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:17,557 DEBUG Processing 680/740 atomic regions from SNP 203700 to 204300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:17,594 DEBUG Processing 638/725 atomic regions from SNP 191101 to 191701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,673 DEBUG Processing 546/698 atomic regions from SNP 163522 to 164122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:17,785 DEBUG Processing 681/740 atomic regions from SNP 204000 to 204600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:17,835 DEBUG Processing 639/725 atomic regions from SNP 191401 to 192001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:17,891 DEBUG Processing 547/698 atomic regions from SNP 163822 to 164422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:18,006 DEBUG Processing 682/740 atomic regions from SNP 204300 to 204900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:18,071 DEBUG Processing 640/725 atomic regions from SNP 191701 to 192301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,132 DEBUG Processing 548/698 atomic regions from SNP 164122 to 164722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:18,225 DEBUG Processing 683/740 atomic regions from SNP 204600 to 205200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:18,300 DEBUG Processing 641/725 atomic regions from SNP 192001 to 192601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,387 DEBUG Processing 549/698 atomic regions from SNP 164422 to 165022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:18,437 DEBUG Processing 684/740 atomic regions from SNP 204900 to 205500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:18,531 DEBUG Processing 642/725 atomic regions from SNP 192301 to 192901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,630 DEBUG Processing 550/698 atomic regions from SNP 164722 to 165322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:18,651 DEBUG Processing 685/740 atomic regions from SNP 205200 to 205800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:18,766 DEBUG Processing 643/725 atomic regions from SNP 192601 to 193201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:18,874 DEBUG Processing 686/740 atomic regions from SNP 205500 to 206100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:18,874 DEBUG Processing 551/698 atomic regions from SNP 165022 to 165622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:18,997 DEBUG Processing 644/725 atomic regions from SNP 192901 to 193501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,090 DEBUG Processing 687/740 atomic regions from SNP 205800 to 206400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:19,094 DEBUG Processing 552/698 atomic regions from SNP 165322 to 165922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:19,223 DEBUG Processing 645/725 atomic regions from SNP 193201 to 193801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,309 DEBUG Processing 688/740 atomic regions from SNP 206100 to 206700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:19,315 DEBUG Processing 553/698 atomic regions from SNP 165622 to 166222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:19,452 DEBUG Processing 646/725 atomic regions from SNP 193501 to 194101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,536 DEBUG Processing 689/740 atomic regions from SNP 206400 to 207000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:19,543 DEBUG Processing 554/698 atomic regions from SNP 165922 to 166522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:19,677 DEBUG Processing 647/725 atomic regions from SNP 193801 to 194401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,759 DEBUG Processing 690/740 atomic regions from SNP 206700 to 207300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:19,772 DEBUG Processing 555/698 atomic regions from SNP 166222 to 166822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:19,910 DEBUG Processing 648/725 atomic regions from SNP 194101 to 194701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:19,985 DEBUG Processing 691/740 atomic regions from SNP 207000 to 207600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:20,042 DEBUG Processing 556/698 atomic regions from SNP 166522 to 167122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:20,193 DEBUG Processing 649/725 atomic regions from SNP 194401 to 195001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,245 DEBUG Processing 692/740 atomic regions from SNP 207300 to 207900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:20,294 DEBUG Processing 557/698 atomic regions from SNP 166822 to 167422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:20,450 DEBUG Processing 650/725 atomic regions from SNP 194701 to 195301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,470 DEBUG Processing 693/740 atomic regions from SNP 207600 to 208200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:20,517 DEBUG Processing 558/698 atomic regions from SNP 167122 to 167722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:20,692 DEBUG Processing 694/740 atomic regions from SNP 207900 to 208500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:20,715 DEBUG Processing 651/725 atomic regions from SNP 195001 to 195601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:20,744 DEBUG Processing 559/698 atomic regions from SNP 167422 to 168022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:20,911 DEBUG Processing 695/740 atomic regions from SNP 208200 to 208800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:20,968 DEBUG Processing 560/698 atomic regions from SNP 167722 to 168322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:20,971 DEBUG Processing 652/725 atomic regions from SNP 195301 to 195901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,157 DEBUG Processing 696/740 atomic regions from SNP 208500 to 209100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:21,195 DEBUG Processing 561/698 atomic regions from SNP 168022 to 168622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:21,225 DEBUG Processing 653/725 atomic regions from SNP 195601 to 196201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,401 DEBUG Processing 697/740 atomic regions from SNP 208800 to 209400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:21,423 DEBUG Processing 562/698 atomic regions from SNP 168322 to 168922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:21,463 DEBUG Processing 654/725 atomic regions from SNP 195901 to 196501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,638 DEBUG Processing 698/740 atomic regions from SNP 209100 to 209700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:21,648 DEBUG Processing 563/698 atomic regions from SNP 168622 to 169222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:21,687 DEBUG Processing 655/725 atomic regions from SNP 196201 to 196801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:21,885 DEBUG Processing 699/740 atomic regions from SNP 209400 to 210000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:21,895 DEBUG Processing 564/698 atomic regions from SNP 168922 to 169522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:21,913 DEBUG Processing 656/725 atomic regions from SNP 196501 to 197101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,123 DEBUG Processing 700/740 atomic regions from SNP 209700 to 210300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:22,143 DEBUG Processing 657/725 atomic regions from SNP 196801 to 197401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,156 DEBUG Processing 565/698 atomic regions from SNP 169222 to 169822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:22,353 DEBUG Processing 701/740 atomic regions from SNP 210000 to 210600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:22,369 DEBUG Processing 658/725 atomic regions from SNP 197101 to 197701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,394 DEBUG Processing 566/698 atomic regions from SNP 169522 to 170122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:22,586 DEBUG Processing 702/740 atomic regions from SNP 210300 to 210900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:22,599 DEBUG Processing 659/725 atomic regions from SNP 197401 to 198001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,633 DEBUG Processing 567/698 atomic regions from SNP 169822 to 170422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:22,820 DEBUG Processing 703/740 atomic regions from SNP 210600 to 211200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:22,835 DEBUG Processing 660/725 atomic regions from SNP 197701 to 198301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:22,872 DEBUG Processing 568/698 atomic regions from SNP 170122 to 170722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:23,057 DEBUG Processing 704/740 atomic regions from SNP 210900 to 211500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:23,088 DEBUG Processing 661/725 atomic regions from SNP 198001 to 198601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,114 DEBUG Processing 569/698 atomic regions from SNP 170422 to 171022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:23,289 DEBUG Processing 705/740 atomic regions from SNP 211200 to 211800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:23,318 DEBUG Processing 662/725 atomic regions from SNP 198301 to 198901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,354 DEBUG Processing 570/698 atomic regions from SNP 170722 to 171322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:23,516 DEBUG Processing 706/740 atomic regions from SNP 211500 to 212100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:23,540 DEBUG Processing 663/725 atomic regions from SNP 198601 to 199201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,592 DEBUG Processing 571/698 atomic regions from SNP 171022 to 171622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:23,747 DEBUG Processing 707/740 atomic regions from SNP 211800 to 212400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:23,764 DEBUG Processing 664/725 atomic regions from SNP 198901 to 199501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:23,829 DEBUG Processing 572/698 atomic regions from SNP 171322 to 171922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:23,979 DEBUG Processing 708/740 atomic regions from SNP 212100 to 212700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:24,011 DEBUG Processing 665/725 atomic regions from SNP 199201 to 199801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,066 DEBUG Processing 573/698 atomic regions from SNP 171622 to 172222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:24,209 DEBUG Processing 709/740 atomic regions from SNP 212400 to 213000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:24,279 DEBUG Processing 666/725 atomic regions from SNP 199501 to 200101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,306 DEBUG Processing 574/698 atomic regions from SNP 171922 to 172522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:24,442 DEBUG Processing 710/740 atomic regions from SNP 212700 to 213300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:24,539 DEBUG Processing 667/725 atomic regions from SNP 199801 to 200401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,545 DEBUG Processing 575/698 atomic regions from SNP 172222 to 172822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:24,671 DEBUG Processing 711/740 atomic regions from SNP 213000 to 213600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:24,784 DEBUG Processing 576/698 atomic regions from SNP 172522 to 173122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:24,798 DEBUG Processing 668/725 atomic regions from SNP 200101 to 200701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:24,897 DEBUG Processing 712/740 atomic regions from SNP 213300 to 213900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:25,050 DEBUG Processing 577/698 atomic regions from SNP 172822 to 173422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:25,058 DEBUG Processing 669/725 atomic regions from SNP 200401 to 201001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:25,124 DEBUG Processing 713/740 atomic regions from SNP 213600 to 214200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:25,310 DEBUG Processing 578/698 atomic regions from SNP 173122 to 173722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:25,314 DEBUG Processing 670/725 atomic regions from SNP 200701 to 201301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:25,355 DEBUG Processing 714/740 atomic regions from SNP 213900 to 214500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:25,559 DEBUG Processing 579/698 atomic regions from SNP 173422 to 174022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:25,574 DEBUG Processing 671/725 atomic regions from SNP 201001 to 201601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:25,589 DEBUG Processing 715/740 atomic regions from SNP 214200 to 214800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:25,812 DEBUG Processing 580/698 atomic regions from SNP 173722 to 174322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:25,821 DEBUG Processing 716/740 atomic regions from SNP 214500 to 215100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:25,832 DEBUG Processing 672/725 atomic regions from SNP 201301 to 201901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:26,059 DEBUG Processing 717/740 atomic regions from SNP 214800 to 215400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:26,071 DEBUG Processing 581/698 atomic regions from SNP 174022 to 174622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:26,095 DEBUG Processing 673/725 atomic regions from SNP 201601 to 202201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:26,295 DEBUG Processing 718/740 atomic regions from SNP 215100 to 215700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:26,341 DEBUG Processing 582/698 atomic regions from SNP 174322 to 174922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:26,362 DEBUG Processing 674/725 atomic regions from SNP 201901 to 202501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:26,528 DEBUG Processing 719/740 atomic regions from SNP 215400 to 216000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:26,617 DEBUG Processing 675/725 atomic regions from SNP 202201 to 202801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:26,618 DEBUG Processing 583/698 atomic regions from SNP 174622 to 175222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:26,758 DEBUG Processing 720/740 atomic regions from SNP 215700 to 216300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:26,863 DEBUG Processing 676/725 atomic regions from SNP 202501 to 203101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:26,895 DEBUG Processing 584/698 atomic regions from SNP 174922 to 175522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:27,023 DEBUG Processing 721/740 atomic regions from SNP 216000 to 216600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:27,112 DEBUG Processing 677/725 atomic regions from SNP 202801 to 203401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:27,171 DEBUG Processing 585/698 atomic regions from SNP 175222 to 175822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:27,294 DEBUG Processing 722/740 atomic regions from SNP 216300 to 216900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:27,351 DEBUG Processing 678/725 atomic regions from SNP 203101 to 203701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:27,445 DEBUG Processing 586/698 atomic regions from SNP 175522 to 176122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:27,560 DEBUG Processing 723/740 atomic regions from SNP 216600 to 217200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:27,596 DEBUG Processing 679/725 atomic regions from SNP 203401 to 204001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:27,711 DEBUG Processing 587/698 atomic regions from SNP 175822 to 176422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:27,825 DEBUG Processing 724/740 atomic regions from SNP 216900 to 217500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:27,851 DEBUG Processing 680/725 atomic regions from SNP 203701 to 204301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:27,983 DEBUG Processing 588/698 atomic regions from SNP 176122 to 176722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:28,098 DEBUG Processing 725/740 atomic regions from SNP 217200 to 217800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:28,123 DEBUG Processing 681/725 atomic regions from SNP 204001 to 204601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:28,256 DEBUG Processing 589/698 atomic regions from SNP 176422 to 177022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:28,357 DEBUG Processing 726/740 atomic regions from SNP 217500 to 218100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:28,389 DEBUG Processing 682/725 atomic regions from SNP 204301 to 204901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:28,528 DEBUG Processing 590/698 atomic regions from SNP 176722 to 177322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:28,607 DEBUG Processing 727/740 atomic regions from SNP 217800 to 218400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:28,652 DEBUG Processing 683/725 atomic regions from SNP 204601 to 205201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:28,793 DEBUG Processing 591/698 atomic regions from SNP 177022 to 177622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:28,875 DEBUG Processing 728/740 atomic regions from SNP 218100 to 218700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:28,905 DEBUG Processing 684/725 atomic regions from SNP 204901 to 205501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:29,061 DEBUG Processing 592/698 atomic regions from SNP 177322 to 177922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:29,147 DEBUG Processing 729/740 atomic regions from SNP 218400 to 219000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:29,166 DEBUG Processing 685/725 atomic regions from SNP 205201 to 205801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:29,323 DEBUG Processing 593/698 atomic regions from SNP 177622 to 178222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:29,418 DEBUG Processing 730/740 atomic regions from SNP 218700 to 219300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:29,422 DEBUG Processing 686/725 atomic regions from SNP 205501 to 206101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:29,571 DEBUG Processing 594/698 atomic regions from SNP 177922 to 178522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:29,674 DEBUG Processing 687/725 atomic regions from SNP 205801 to 206401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:29,684 DEBUG Processing 731/740 atomic regions from SNP 219000 to 219600 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:29,830 DEBUG Processing 595/698 atomic regions from SNP 178222 to 178822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:29,930 DEBUG Processing 688/725 atomic regions from SNP 206101 to 206701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:29,961 DEBUG Processing 732/740 atomic regions from SNP 219300 to 219900 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:30,092 DEBUG Processing 596/698 atomic regions from SNP 178522 to 179122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:30,193 DEBUG Processing 689/725 atomic regions from SNP 206401 to 207001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:30,229 DEBUG Processing 733/740 atomic regions from SNP 219600 to 220200 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:30,352 DEBUG Processing 597/698 atomic regions from SNP 178822 to 179422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:30,456 DEBUG Processing 690/725 atomic regions from SNP 206701 to 207301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:30,467 DEBUG Processing 734/740 atomic regions from SNP 219900 to 220500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:30,600 DEBUG Processing 598/698 atomic regions from SNP 179122 to 179722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:30,704 DEBUG Processing 735/740 atomic regions from SNP 220200 to 220800 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:30,723 DEBUG Processing 691/725 atomic regions from SNP 207001 to 207601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:30,836 DEBUG Processing 599/698 atomic regions from SNP 179422 to 180022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:30,936 DEBUG Processing 736/740 atomic regions from SNP 220500 to 221100 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:30,992 DEBUG Processing 692/725 atomic regions from SNP 207301 to 207901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:31,072 DEBUG Processing 600/698 atomic regions from SNP 179722 to 180322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:31,162 DEBUG Processing 737/740 atomic regions from SNP 220800 to 221400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:31,262 DEBUG Processing 693/725 atomic regions from SNP 207601 to 208201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:31,309 DEBUG Processing 601/698 atomic regions from SNP 180022 to 180622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:31,391 DEBUG Processing 738/740 atomic regions from SNP 221100 to 221700 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:31,531 DEBUG Processing 694/725 atomic regions from SNP 207901 to 208501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:31,549 DEBUG Processing 602/698 atomic regions from SNP 180322 to 180922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:31,625 DEBUG Processing 739/740 atomic regions from SNP 221400 to 222000 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:31,786 DEBUG Processing 603/698 atomic regions from SNP 180622 to 181222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:31,790 DEBUG Processing 695/725 atomic regions from SNP 208201 to 208801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:31,856 DEBUG Processing 740/740 atomic regions from SNP 221700 to 222300 for chr10 (subchromosome 1 of 1). 2025-01-31 09:54:31,998 DEBUG Unique SNPs positions in subchromosome 1: 222301 2025-01-31 09:54:32,025 DEBUG Processing 604/698 atomic regions from SNP 180922 to 181522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:32,055 DEBUG Processing 696/725 atomic regions from SNP 208501 to 209101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:32,263 DEBUG Processing 605/698 atomic regions from SNP 181222 to 181822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:32,313 DEBUG Processing 697/725 atomic regions from SNP 208801 to 209401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:32,500 DEBUG Processing 606/698 atomic regions from SNP 181522 to 182122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:32,560 DEBUG Processing 698/725 atomic regions from SNP 209101 to 209701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:32,738 DEBUG Processing 607/698 atomic regions from SNP 181822 to 182422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:32,800 DEBUG Processing 699/725 atomic regions from SNP 209401 to 210001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:32,975 DEBUG Processing 608/698 atomic regions from SNP 182122 to 182722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:33,056 DEBUG Processing 700/725 atomic regions from SNP 209701 to 210301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:33,227 DEBUG Processing 609/698 atomic regions from SNP 182422 to 183022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:33,308 DEBUG Processing 701/725 atomic regions from SNP 210001 to 210601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:33,487 DEBUG Processing 610/698 atomic regions from SNP 182722 to 183322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:33,552 DEBUG Processing 702/725 atomic regions from SNP 210301 to 210901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:33,740 DEBUG Processing 611/698 atomic regions from SNP 183022 to 183622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:33,796 DEBUG Processing 703/725 atomic regions from SNP 210601 to 211201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:33,972 DEBUG Processing 612/698 atomic regions from SNP 183322 to 183922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:34,051 DEBUG Processing 704/725 atomic regions from SNP 210901 to 211501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:34,215 DEBUG Processing 613/698 atomic regions from SNP 183622 to 184222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:34,305 DEBUG Processing 705/725 atomic regions from SNP 211201 to 211801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:34,470 DEBUG Processing 614/698 atomic regions from SNP 183922 to 184522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:34,555 DEBUG Processing 706/725 atomic regions from SNP 211501 to 212101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:34,702 DEBUG Processing 615/698 atomic regions from SNP 184222 to 184822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:34,799 DEBUG Processing 707/725 atomic regions from SNP 211801 to 212401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:34,937 DEBUG Processing 616/698 atomic regions from SNP 184522 to 185122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:35,056 DEBUG Processing 708/725 atomic regions from SNP 212101 to 212701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:35,170 DEBUG Processing 617/698 atomic regions from SNP 184822 to 185422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:35,307 DEBUG Processing 709/725 atomic regions from SNP 212401 to 213001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:35,400 DEBUG Processing 618/698 atomic regions from SNP 185122 to 185722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:35,565 DEBUG Processing 710/725 atomic regions from SNP 212701 to 213301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:35,631 DEBUG Processing 619/698 atomic regions from SNP 185422 to 186022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:35,817 DEBUG Processing 711/725 atomic regions from SNP 213001 to 213601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:35,865 DEBUG Processing 620/698 atomic regions from SNP 185722 to 186322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:36,066 DEBUG Processing 712/725 atomic regions from SNP 213301 to 213901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:36,121 DEBUG Processing 621/698 atomic regions from SNP 186022 to 186622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:36,323 DEBUG Processing 713/725 atomic regions from SNP 213601 to 214201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:36,379 DEBUG Processing 622/698 atomic regions from SNP 186322 to 186922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:36,555 DEBUG Processing 714/725 atomic regions from SNP 213901 to 214501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:36,634 DEBUG Processing 623/698 atomic regions from SNP 186622 to 187222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:36,775 DEBUG Processing 715/725 atomic regions from SNP 214201 to 214801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:36,886 DEBUG Processing 624/698 atomic regions from SNP 186922 to 187522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:37,003 DEBUG Processing 716/725 atomic regions from SNP 214501 to 215101 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:37,151 DEBUG Processing 625/698 atomic regions from SNP 187222 to 187822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:37,228 DEBUG Processing 717/725 atomic regions from SNP 214801 to 215401 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:37,382 DEBUG Processing 626/698 atomic regions from SNP 187522 to 188122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:37,456 DEBUG Processing 718/725 atomic regions from SNP 215101 to 215701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:37,629 DEBUG Processing 627/698 atomic regions from SNP 187822 to 188422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:37,679 DEBUG Processing 719/725 atomic regions from SNP 215401 to 216001 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:37,895 DEBUG Processing 628/698 atomic regions from SNP 188122 to 188722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:37,905 DEBUG Processing 720/725 atomic regions from SNP 215701 to 216301 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:38,133 DEBUG Processing 721/725 atomic regions from SNP 216001 to 216601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:38,159 DEBUG Processing 629/698 atomic regions from SNP 188422 to 189022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:38,359 DEBUG Processing 722/725 atomic regions from SNP 216301 to 216901 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:38,389 DEBUG Processing 630/698 atomic regions from SNP 188722 to 189322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:38,586 DEBUG Processing 723/725 atomic regions from SNP 216601 to 217201 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:38,616 DEBUG Processing 631/698 atomic regions from SNP 189022 to 189622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:38,850 DEBUG Processing 724/725 atomic regions from SNP 216901 to 217501 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:38,854 DEBUG Processing 632/698 atomic regions from SNP 189322 to 189922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:39,083 DEBUG Processing 633/698 atomic regions from SNP 189622 to 190222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:39,087 DEBUG Processing 725/725 atomic regions from SNP 217201 to 217801 for chr8 (subchromosome 1 of 1). 2025-01-31 09:54:39,220 DEBUG Unique SNPs positions in subchromosome 1: 217802 2025-01-31 09:54:39,305 DEBUG Processing 634/698 atomic regions from SNP 189922 to 190522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:39,521 DEBUG Processing 635/698 atomic regions from SNP 190222 to 190822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:39,734 DEBUG Processing 636/698 atomic regions from SNP 190522 to 191122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:39,951 DEBUG Processing 637/698 atomic regions from SNP 190822 to 191422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:40,175 DEBUG Processing 638/698 atomic regions from SNP 191122 to 191722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:40,403 DEBUG Processing 639/698 atomic regions from SNP 191422 to 192022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:40,639 DEBUG Processing 640/698 atomic regions from SNP 191722 to 192322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:40,895 DEBUG Processing 641/698 atomic regions from SNP 192022 to 192622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:41,118 DEBUG Processing 642/698 atomic regions from SNP 192322 to 192922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:41,342 DEBUG Processing 643/698 atomic regions from SNP 192622 to 193222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:41,568 DEBUG Processing 644/698 atomic regions from SNP 192922 to 193522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:41,812 DEBUG Processing 645/698 atomic regions from SNP 193222 to 193822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:42,057 DEBUG Processing 646/698 atomic regions from SNP 193522 to 194122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:42,289 DEBUG Processing 647/698 atomic regions from SNP 193822 to 194422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:42,522 DEBUG Processing 648/698 atomic regions from SNP 194122 to 194722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:42,757 DEBUG Processing 649/698 atomic regions from SNP 194422 to 195022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:42,990 DEBUG Processing 650/698 atomic regions from SNP 194722 to 195322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:43,101 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:54:43,226 DEBUG Processing 651/698 atomic regions from SNP 195022 to 195622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:43,464 DEBUG Processing 652/698 atomic regions from SNP 195322 to 195922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:43,697 DEBUG Processing 653/698 atomic regions from SNP 195622 to 196222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:43,933 DEBUG Processing 654/698 atomic regions from SNP 195922 to 196522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:44,170 DEBUG Processing 655/698 atomic regions from SNP 196222 to 196822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:44,409 DEBUG Processing 656/698 atomic regions from SNP 196522 to 197122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:44,646 DEBUG Processing 657/698 atomic regions from SNP 196822 to 197422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:44,882 DEBUG Processing 658/698 atomic regions from SNP 197122 to 197722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:45,115 DEBUG Processing 659/698 atomic regions from SNP 197422 to 198022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:45,362 DEBUG Processing 660/698 atomic regions from SNP 197722 to 198322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:45,617 DEBUG Processing 661/698 atomic regions from SNP 198022 to 198622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:45,852 DEBUG Processing 662/698 atomic regions from SNP 198322 to 198922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:46,097 DEBUG Processing 663/698 atomic regions from SNP 198622 to 199222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:46,326 DEBUG Processing 664/698 atomic regions from SNP 198922 to 199522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:46,555 DEBUG Processing 665/698 atomic regions from SNP 199222 to 199822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:46,782 DEBUG Processing 666/698 atomic regions from SNP 199522 to 200122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:47,019 DEBUG Processing 667/698 atomic regions from SNP 199822 to 200422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:47,278 DEBUG Processing 668/698 atomic regions from SNP 200122 to 200722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:47,514 DEBUG Processing 669/698 atomic regions from SNP 200422 to 201022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:47,750 DEBUG Processing 670/698 atomic regions from SNP 200722 to 201322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:47,982 DEBUG Processing 671/698 atomic regions from SNP 201022 to 201622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:48,240 DEBUG Processing 672/698 atomic regions from SNP 201322 to 201922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:48,517 DEBUG Processing 673/698 atomic regions from SNP 201622 to 202222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:48,788 DEBUG Processing 674/698 atomic regions from SNP 201922 to 202522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:49,055 DEBUG Processing 675/698 atomic regions from SNP 202222 to 202822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:49,325 DEBUG Processing 676/698 atomic regions from SNP 202522 to 203122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:49,600 DEBUG Processing 677/698 atomic regions from SNP 202822 to 203422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:49,867 DEBUG Processing 678/698 atomic regions from SNP 203122 to 203722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:50,140 DEBUG Processing 679/698 atomic regions from SNP 203422 to 204022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:50,411 DEBUG Processing 680/698 atomic regions from SNP 203722 to 204322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:50,678 DEBUG Processing 681/698 atomic regions from SNP 204022 to 204622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:50,944 DEBUG Processing 682/698 atomic regions from SNP 204322 to 204922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:51,202 DEBUG Processing 683/698 atomic regions from SNP 204622 to 205222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:51,433 DEBUG Processing 684/698 atomic regions from SNP 204922 to 205522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:51,665 DEBUG Processing 685/698 atomic regions from SNP 205222 to 205822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:51,897 DEBUG Processing 686/698 atomic regions from SNP 205522 to 206122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:52,112 DEBUG Processing 687/698 atomic regions from SNP 205822 to 206422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:52,341 DEBUG Processing 688/698 atomic regions from SNP 206122 to 206722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:52,581 DEBUG Processing 689/698 atomic regions from SNP 206422 to 207022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:52,838 DEBUG Processing 690/698 atomic regions from SNP 206722 to 207322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:53,091 DEBUG Processing 691/698 atomic regions from SNP 207022 to 207622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:53,132 DEBUG Subchromosome time: 226.9127718731761, subchromosome SNPs: 222301 2025-01-31 09:54:53,132 DEBUG Estimated BADs: [1.87, 0.47, 1.87, 0.62, 1.87, 13.11, 3.74, 0.21, 0.94, 5.62, 0.23, 1.87, 0.62, 1.87, 5.62, 1.87, 18.72, 1.87, 14.98, 0.62, 3.74, 0.47, 3.74, 0.47, 0.94, 1.87, 0.62, 11.23, 0.94] SNP counts: [20207, 3576, 20111, 17388, 2751, 448, 11796, 5107, 12995, 11019, 2993, 10495, 4199, 1951, 5264, 2133, 3914, 16319, 247, 1992, 8280, 2798, 1512, 14098, 13285, 15806, 5154, 4148, 2315] SNP IDs counts: [20207, 3576, 20111, 17388, 2751, 448, 11796, 5107, 12995, 11019, 2993, 10495, 4199, 1951, 5264, 2133, 3914, 16319, 247, 1992, 8280, 2798, 1512, 14098, 13285, 15806, 5154, 4148, 2315] Critical gap: 621112bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.71Mbp, 16.95Mbp, 28.28Mbp, 38.54Mbp, 40.10Mbp, 40.35Mbp, 46.78Mbp, 50.09Mbp, 58.22Mbp, 64.15Mbp, 66.13Mbp, 71.92Mbp, 74.38Mbp, 75.48Mbp, 78.28Mbp, 79.61Mbp, 81.65Mbp, 91.08Mbp, 91.21Mbp, 92.31Mbp, 96.73Mbp, 98.37Mbp, 99.21Mbp, 107.75Mbp, 115.24Mbp, 123.95Mbp, 126.89Mbp, 129.11Mbp, 130.69Mbp] 2025-01-31 09:54:53,133 DEBUG chr10 time: 226.91331048682332 s 2025-01-31 09:54:53,284 DEBUG chr10: Fitting background model for 29 segments 2025-01-31 09:54:53,321 DEBUG Processing 692/698 atomic regions from SNP 207322 to 207922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:53,539 DEBUG Processing 693/698 atomic regions from SNP 207622 to 208222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:53,769 DEBUG Processing 694/698 atomic regions from SNP 207922 to 208522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:54,012 DEBUG Processing 695/698 atomic regions from SNP 208222 to 208822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:54,237 DEBUG Processing 696/698 atomic regions from SNP 208522 to 209122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:54,456 DEBUG Processing 697/698 atomic regions from SNP 208822 to 209422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:54,690 DEBUG Processing 698/698 atomic regions from SNP 209122 to 209722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:54:54,829 DEBUG Unique SNPs positions in subchromosome 3: 209723 2025-01-31 09:54:57,830 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:54:57,831 DEBUG chr14: Signal quantile: 0.992. signal threshold: 13. Best RMSEA: 0.011 2025-01-31 09:54:59,364 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:55:00,096 DEBUG chr14 total SNP count: 197619 2025-01-31 09:55:00,096 DEBUG chr14 length: 124902244 2025-01-31 09:55:00,096 DEBUG ----------------------------------------- 2025-01-31 09:55:00,096 INFO Processing SNPs in chr14 2025-01-31 09:55:00,400 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 154), (154, 197619)] 2025-01-31 09:55:00,484 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:00,504 DEBUG Segmenting atomic regions: 2025-01-31 09:55:00,588 DEBUG Processing 1/1 atomic regions from SNP 0 to 153 for chr14 (subchromosome 1 of 2). 2025-01-31 09:55:00,596 DEBUG Unique SNPs positions in subchromosome 1: 154 2025-01-31 09:55:00,597 DEBUG Subchromosome time: 0.11249540746212006, subchromosome SNPs: 154 2025-01-31 09:55:00,649 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:11,592 DEBUG Subchromosome time: 237.6201640293002, subchromosome SNPs: 217802 2025-01-31 09:55:11,592 DEBUG Estimated BADs: [5.22, 0.26, 0.87, 5.22, 0.87, 2.61, 5.22, 0.44, 1.31, 2.61, 0.37, 1.31, 0.44, 1.31, 5.22, 1.31, 0.44, 1.31, 5.22, 0.44, 13.06, 2.61, 0.37, 1.31, 20.90, 7.84, 0.87, 5.22, 0.44, 2.61, 7.84, 0.65, 2.61, 15.67, 2.61, 7.84, 0.37, 1.31, 7.84, 2.61, 5.22, 1.31, 5.22, 18.28, 7.84, 2.61] SNP counts: [2690, 4268, 3797, 9853, 5280, 10398, 3691, 4822, 5437, 5704, 5355, 2713, 4494, 3160, 2937, 2301, 11083, 2456, 584, 4862, 303, 1713, 3591, 9324, 2270, 3097, 3477, 722, 1508, 7929, 763, 2138, 2029, 2951, 16157, 4033, 11700, 2779, 5189, 4056, 5998, 7035, 4668, 9283, 4802, 4402] SNP IDs counts: [2690, 4268, 3797, 9853, 5280, 10398, 3691, 4822, 5437, 5704, 5355, 2713, 4494, 3160, 2937, 2301, 11083, 2456, 584, 4862, 303, 1713, 3591, 9324, 2270, 3097, 3477, 722, 1508, 7929, 763, 2138, 2029, 2951, 16157, 4033, 11700, 2779, 5189, 4056, 5998, 7035, 4668, 9283, 4802, 4402] Critical gap: 621267bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.68Mbp, 7.55Mbp, 9.69Mbp, 14.93Mbp, 18.01Mbp, 25.55Mbp, 27.55Mbp, 30.51Mbp, 33.59Mbp, 36.68Mbp, 39.99Mbp, 41.58Mbp, 44.39Mbp, 46.14Mbp, 47.72Mbp, 48.94Mbp, 56.03Mbp, 57.49Mbp, 57.81Mbp, 60.86Mbp, 61.02Mbp, 61.95Mbp, 64.18Mbp, 69.75Mbp, 70.94Mbp, 72.85Mbp, 75.03Mbp, 75.45Mbp, 76.37Mbp, 80.74Mbp, 81.15Mbp, 82.36Mbp, 83.57Mbp, 85.10Mbp, 93.89Mbp, 96.05Mbp, 103.02Mbp, 104.53Mbp, 107.38Mbp, 109.53Mbp, 112.72Mbp, 116.87Mbp, 119.34Mbp, 124.29Mbp, 126.83Mbp, 129.40Mbp] 2025-01-31 09:55:11,592 DEBUG chr8 time: 237.620842769742 s 2025-01-31 09:55:11,736 DEBUG chr8: Fitting background model for 46 segments 2025-01-31 09:55:20,531 DEBUG Subchromosome time: 222.16984985023737, subchromosome SNPs: 209723 2025-01-31 09:55:20,531 DEBUG Estimated BADs: [1.08, 8.66, 0.43, 4.33, 0.31, 2.17, 17.32, 0.54, 8.66, 0.43, 2.17, 17.32, 6.50, 0.00, 0.72, 8.66, 0.72, 8.66, 0.31, 4.33, 1.08, 8.66, 0.72, 2.17, 15.16, 6.50, 0.43, 2.17, 0.43, 2.17, 0.24, 2.17, 0.36, 4.33, 2.17, 4.33, 0.72, 2.17, 0.43, 2.17, 6.50, 2.17, 0.27, 2.17, 0.31, 2.17, 0.22, 2.17, 4.33, 0.72, 2.17, 0.72, 4.33, 2.17, 4.33, 1.08, 4.33, 12.99, 2.17, 4.33, 2.17, 12.99, 4.33] SNP counts: [843, 2351, 842, 2505, 2976, 910, 267, 3282, 2263, 1493, 967, 972, 1015, 4, 1362, 3087, 1750, 7420, 1776, 3695, 4233, 423, 6040, 2621, 2337, 2802, 1851, 3018, 2401, 904, 5368, 2097, 10234, 1764, 4934, 2302, 7787, 5688, 3617, 2061, 3351, 6991, 5894, 3400, 3208, 1208, 4496, 4060, 9436, 2972, 1356, 4612, 3418, 18359, 5255, 3120, 1614, 3256, 4946, 5381, 13363, 1948, 6507] SNP IDs counts: [843, 2351, 842, 2505, 2976, 910, 267, 3282, 2263, 1493, 967, 972, 1015, 4, 1362, 3087, 1750, 7420, 1776, 3695, 4233, 423, 6040, 2621, 2337, 2802, 1851, 3018, 2401, 904, 5368, 2097, 10234, 1764, 4934, 2302, 7787, 5688, 3617, 2061, 3351, 6991, 5894, 3400, 3208, 1208, 4496, 4060, 9436, 2972, 1356, 4612, 3418, 18359, 5255, 3120, 1614, 3256, 4946, 5381, 13363, 1948, 6507] Critical gap: 668300bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.59Mbp, 5.13Mbp, 5.74Mbp, 7.31Mbp, 12.31Mbp, 12.92Mbp, 13.06Mbp, 15.91Mbp, 17.10Mbp, 18.36Mbp, 19.00Mbp, 19.50Mbp, 20.07Mbp[0.88Mbp], 20.98Mbp[1.80Mbp], 24.25Mbp, 25.95Mbp, 27.13Mbp, 31.18Mbp, 33.79Mbp, 35.82Mbp, 38.06Mbp, 38.28Mbp, 42.92Mbp, 44.46Mbp, 45.68Mbp, 47.15Mbp, 48.39Mbp, 50.04Mbp, 51.55Mbp, 52.05Mbp, 55.43Mbp, 56.70Mbp, 63.50Mbp, 64.51Mbp, 67.19Mbp, 68.41Mbp, 72.79Mbp, 75.98Mbp, 78.12Mbp, 79.22Mbp, 80.99Mbp, 84.82Mbp, 88.56Mbp, 90.49Mbp, 92.34Mbp, 93.02Mbp, 95.82Mbp, 98.05Mbp, 103.08Mbp, 105.05Mbp, 105.81Mbp, 109.09Mbp, 110.90Mbp, 120.83Mbp, 123.63Mbp, 125.39Mbp, 126.24Mbp, 127.97Mbp, 130.67Mbp, 133.55Mbp, 140.80Mbp, 141.87Mbp, 145.44Mbp] 2025-01-31 09:55:20,531 DEBUG chr7 time: 222.17049767449498 s 2025-01-31 09:55:20,681 DEBUG chr7: Fitting background model for 62 segments 2025-01-31 09:55:22,901 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:55:22,902 DEBUG chr9: Signal quantile: 0.986. signal threshold: 14. Best RMSEA: 0.008 2025-01-31 09:55:24,462 DEBUG Segmenting atomic regions: 2025-01-31 09:55:24,549 DEBUG Processing 1/657 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,763 DEBUG Processing 2/657 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,981 DEBUG Processing 3/657 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,210 DEBUG Processing 4/657 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,298 DEBUG chr9 total SNP count: 216054 2025-01-31 09:55:25,298 DEBUG chr9 length: 124595110 2025-01-31 09:55:25,298 DEBUG ----------------------------------------- 2025-01-31 09:55:25,298 INFO Processing SNPs in chr9 2025-01-31 09:55:25,446 DEBUG Processing 5/657 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,511 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216054)] 2025-01-31 09:55:25,655 DEBUG Processing 6/657 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,660 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:25,854 DEBUG Processing 7/657 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,059 DEBUG Processing 8/657 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,266 DEBUG Processing 9/657 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,479 DEBUG Processing 10/657 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,689 DEBUG Processing 11/657 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,902 DEBUG Processing 12/657 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,118 DEBUG Processing 13/657 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,331 DEBUG Processing 14/657 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,550 DEBUG Processing 15/657 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,769 DEBUG Processing 16/657 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,986 DEBUG Processing 17/657 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,208 DEBUG Processing 18/657 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,431 DEBUG Processing 19/657 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,655 DEBUG Processing 20/657 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,873 DEBUG Processing 21/657 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,096 DEBUG Processing 22/657 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,314 DEBUG Processing 23/657 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,532 DEBUG Processing 24/657 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,742 DEBUG Processing 25/657 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,956 DEBUG Processing 26/657 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,165 DEBUG Processing 27/657 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,379 DEBUG Processing 28/657 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,599 DEBUG Processing 29/657 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,820 DEBUG Processing 30/657 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,038 DEBUG Processing 31/657 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,265 DEBUG Processing 32/657 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,479 DEBUG Processing 33/657 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,691 DEBUG Processing 34/657 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,904 DEBUG Processing 35/657 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,122 DEBUG Processing 36/657 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,342 DEBUG Processing 37/657 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,585 DEBUG Processing 38/657 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,829 DEBUG Processing 39/657 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,086 DEBUG Processing 40/657 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,347 DEBUG Processing 41/657 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,633 DEBUG Processing 42/657 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,009 DEBUG Processing 43/657 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,315 DEBUG Processing 44/657 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,552 DEBUG Processing 45/657 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,772 DEBUG Processing 46/657 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,989 DEBUG Processing 47/657 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,194 DEBUG Processing 48/657 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,397 DEBUG Processing 49/657 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,603 DEBUG Processing 50/657 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,808 DEBUG Processing 51/657 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,014 DEBUG Processing 52/657 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,235 DEBUG Processing 53/657 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,458 DEBUG Processing 54/657 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,659 DEBUG Processing 55/657 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,862 DEBUG Processing 56/657 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,087 DEBUG Processing 57/657 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,308 DEBUG Processing 58/657 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,528 DEBUG Processing 59/657 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,750 DEBUG Processing 60/657 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,958 DEBUG Processing 61/657 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,164 DEBUG Processing 62/657 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,391 DEBUG Processing 63/657 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,638 DEBUG Processing 64/657 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,875 DEBUG Processing 65/657 atomic regions from SNP 19264 to 19864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,127 DEBUG Processing 66/657 atomic regions from SNP 19564 to 20164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,394 DEBUG Processing 67/657 atomic regions from SNP 19864 to 20464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,678 DEBUG Processing 68/657 atomic regions from SNP 20164 to 20764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,911 DEBUG Processing 69/657 atomic regions from SNP 20464 to 21064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,135 DEBUG Processing 70/657 atomic regions from SNP 20764 to 21364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,377 DEBUG Processing 71/657 atomic regions from SNP 21064 to 21664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,637 DEBUG Processing 72/657 atomic regions from SNP 21364 to 21964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,891 DEBUG Processing 73/657 atomic regions from SNP 21664 to 22264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,187 DEBUG Processing 74/657 atomic regions from SNP 21964 to 22564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,475 DEBUG Processing 75/657 atomic regions from SNP 22264 to 22864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,627 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:55:41,751 DEBUG Processing 76/657 atomic regions from SNP 22564 to 23164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,052 DEBUG Processing 77/657 atomic regions from SNP 22864 to 23464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,381 DEBUG Processing 78/657 atomic regions from SNP 23164 to 23764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,675 DEBUG Processing 79/657 atomic regions from SNP 23464 to 24064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,974 DEBUG Processing 80/657 atomic regions from SNP 23764 to 24364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,245 DEBUG Processing 81/657 atomic regions from SNP 24064 to 24664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,552 DEBUG Processing 82/657 atomic regions from SNP 24364 to 24964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,851 DEBUG Processing 83/657 atomic regions from SNP 24664 to 25264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,194 DEBUG Processing 84/657 atomic regions from SNP 24964 to 25564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,485 DEBUG Processing 85/657 atomic regions from SNP 25264 to 25864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,755 DEBUG Processing 86/657 atomic regions from SNP 25564 to 26164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,056 DEBUG Processing 87/657 atomic regions from SNP 25864 to 26464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,306 DEBUG Processing 88/657 atomic regions from SNP 26164 to 26764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,596 DEBUG Processing 89/657 atomic regions from SNP 26464 to 27064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,908 DEBUG Processing 90/657 atomic regions from SNP 26764 to 27364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,220 DEBUG Processing 91/657 atomic regions from SNP 27064 to 27664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,522 DEBUG Processing 92/657 atomic regions from SNP 27364 to 27964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,792 DEBUG Processing 93/657 atomic regions from SNP 27664 to 28264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,047 DEBUG Processing 94/657 atomic regions from SNP 27964 to 28564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,307 DEBUG Processing 95/657 atomic regions from SNP 28264 to 28864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,563 DEBUG Processing 96/657 atomic regions from SNP 28564 to 29164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,813 DEBUG Processing 97/657 atomic regions from SNP 28864 to 29464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,081 DEBUG Processing 98/657 atomic regions from SNP 29164 to 29764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,337 DEBUG Processing 99/657 atomic regions from SNP 29464 to 30064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,660 DEBUG Processing 100/657 atomic regions from SNP 29764 to 30364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,934 DEBUG Processing 101/657 atomic regions from SNP 30064 to 30664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,259 DEBUG Processing 102/657 atomic regions from SNP 30364 to 30964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,552 DEBUG Processing 103/657 atomic regions from SNP 30664 to 31264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,862 DEBUG Processing 104/657 atomic regions from SNP 30964 to 31564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,170 DEBUG Processing 105/657 atomic regions from SNP 31264 to 31864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,423 DEBUG Processing 106/657 atomic regions from SNP 31564 to 32164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,651 DEBUG Processing 107/657 atomic regions from SNP 31864 to 32464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,874 DEBUG Processing 108/657 atomic regions from SNP 32164 to 32764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,103 DEBUG Processing 109/657 atomic regions from SNP 32464 to 33064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,331 DEBUG Processing 110/657 atomic regions from SNP 32764 to 33364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,579 DEBUG Processing 111/657 atomic regions from SNP 33064 to 33664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,823 DEBUG Processing 112/657 atomic regions from SNP 33364 to 33964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,046 DEBUG Processing 113/657 atomic regions from SNP 33664 to 34264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,289 DEBUG Processing 114/657 atomic regions from SNP 33964 to 34564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,534 DEBUG Processing 115/657 atomic regions from SNP 34264 to 34864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,789 DEBUG Segmenting atomic regions: 2025-01-31 09:55:52,799 DEBUG Processing 116/657 atomic regions from SNP 34564 to 35164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,886 DEBUG Processing 1/719 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,072 DEBUG Processing 117/657 atomic regions from SNP 34864 to 35464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,151 DEBUG Processing 2/719 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,341 DEBUG Processing 118/657 atomic regions from SNP 35164 to 35764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,440 DEBUG Processing 3/719 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,696 DEBUG Processing 119/657 atomic regions from SNP 35464 to 36064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,790 DEBUG Processing 4/719 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,967 DEBUG Processing 120/657 atomic regions from SNP 35764 to 36364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,111 DEBUG Processing 5/719 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,206 DEBUG Processing 121/657 atomic regions from SNP 36064 to 36664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,377 DEBUG Processing 6/719 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,424 DEBUG Processing 122/657 atomic regions from SNP 36364 to 36964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,628 DEBUG Processing 7/719 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,647 DEBUG Processing 123/657 atomic regions from SNP 36664 to 37264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,867 DEBUG Processing 124/657 atomic regions from SNP 36964 to 37564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,877 DEBUG Processing 8/719 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,084 DEBUG Processing 125/657 atomic regions from SNP 37264 to 37864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,128 DEBUG Processing 9/719 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,294 DEBUG Processing 126/657 atomic regions from SNP 37564 to 38164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,376 DEBUG Processing 10/719 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,515 DEBUG Processing 127/657 atomic regions from SNP 37864 to 38464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,629 DEBUG Processing 11/719 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,744 DEBUG Processing 128/657 atomic regions from SNP 38164 to 38764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,876 DEBUG Processing 12/719 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,971 DEBUG Processing 129/657 atomic regions from SNP 38464 to 39064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,121 DEBUG Processing 13/719 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,199 DEBUG Processing 130/657 atomic regions from SNP 38764 to 39364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,366 DEBUG Processing 14/719 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,447 DEBUG Processing 131/657 atomic regions from SNP 39064 to 39664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,669 DEBUG Processing 15/719 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,726 DEBUG Processing 132/657 atomic regions from SNP 39364 to 39964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,916 DEBUG Processing 16/719 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,976 DEBUG Processing 133/657 atomic regions from SNP 39664 to 40264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,159 DEBUG Processing 17/719 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,231 DEBUG Processing 134/657 atomic regions from SNP 39964 to 40564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,397 DEBUG Processing 18/719 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,472 DEBUG Processing 135/657 atomic regions from SNP 40264 to 40864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,637 DEBUG Processing 19/719 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,728 DEBUG Processing 136/657 atomic regions from SNP 40564 to 41164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,887 DEBUG Processing 20/719 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,973 DEBUG Processing 137/657 atomic regions from SNP 40864 to 41464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,133 DEBUG Processing 21/719 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,236 DEBUG Processing 138/657 atomic regions from SNP 41164 to 41764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,379 DEBUG Processing 22/719 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,492 DEBUG Processing 139/657 atomic regions from SNP 41464 to 42064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,603 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:55:58,620 DEBUG Processing 23/719 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,743 DEBUG Processing 140/657 atomic regions from SNP 41764 to 42364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,864 DEBUG Processing 24/719 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,004 DEBUG Processing 141/657 atomic regions from SNP 42064 to 42664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,111 DEBUG Processing 25/719 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,256 DEBUG Processing 142/657 atomic regions from SNP 42364 to 42964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,361 DEBUG Processing 26/719 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,537 DEBUG Processing 143/657 atomic regions from SNP 42664 to 43264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,686 DEBUG Processing 27/719 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,846 DEBUG Processing 144/657 atomic regions from SNP 42964 to 43564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,019 DEBUG Processing 28/719 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,169 DEBUG Processing 145/657 atomic regions from SNP 43264 to 43864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,264 DEBUG Processing 29/719 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,434 DEBUG Processing 146/657 atomic regions from SNP 43564 to 44164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,530 DEBUG Processing 30/719 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,660 DEBUG Processing 147/657 atomic regions from SNP 43864 to 44464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,776 DEBUG Processing 31/719 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,902 DEBUG Processing 148/657 atomic regions from SNP 44164 to 44764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,020 DEBUG Processing 32/719 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,133 DEBUG Processing 149/657 atomic regions from SNP 44464 to 45064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,263 DEBUG Processing 33/719 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,361 DEBUG Processing 150/657 atomic regions from SNP 44764 to 45364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,506 DEBUG Processing 34/719 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,633 DEBUG Processing 151/657 atomic regions from SNP 45064 to 45664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,774 DEBUG Processing 35/719 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,915 DEBUG Processing 152/657 atomic regions from SNP 45364 to 45964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,108 DEBUG Processing 36/719 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,228 DEBUG Processing 153/657 atomic regions from SNP 45664 to 46264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,447 DEBUG Processing 37/719 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,592 DEBUG Processing 154/657 atomic regions from SNP 45964 to 46564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,802 DEBUG Processing 38/719 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,952 DEBUG Processing 155/657 atomic regions from SNP 46264 to 46864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,188 DEBUG Processing 39/719 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,348 DEBUG Processing 156/657 atomic regions from SNP 46564 to 47164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,555 DEBUG Processing 40/719 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,705 DEBUG Processing 157/657 atomic regions from SNP 46864 to 47464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,935 DEBUG Processing 41/719 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,080 DEBUG Processing 158/657 atomic regions from SNP 47164 to 47764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:04,336 DEBUG Processing 42/719 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,453 DEBUG Processing 159/657 atomic regions from SNP 47464 to 48064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:04,718 DEBUG Processing 43/719 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,850 DEBUG Processing 160/657 atomic regions from SNP 47764 to 48364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,099 DEBUG Processing 44/719 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,229 DEBUG Processing 161/657 atomic regions from SNP 48064 to 48664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,413 DEBUG Processing 45/719 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,602 DEBUG Processing 162/657 atomic regions from SNP 48364 to 48964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,700 DEBUG Processing 46/719 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,982 DEBUG Processing 163/657 atomic regions from SNP 48664 to 49264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,052 DEBUG Processing 47/719 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,371 DEBUG Processing 164/657 atomic regions from SNP 48964 to 49564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,447 DEBUG Processing 48/719 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,754 DEBUG Processing 165/657 atomic regions from SNP 49264 to 49864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,857 DEBUG Processing 49/719 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,099 DEBUG Processing 166/657 atomic regions from SNP 49564 to 50164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,251 DEBUG Processing 50/719 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,388 DEBUG Processing 167/657 atomic regions from SNP 49864 to 50464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,576 DEBUG Processing 51/719 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,691 DEBUG Processing 168/657 atomic regions from SNP 50164 to 50764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,916 DEBUG Processing 52/719 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,049 DEBUG Processing 169/657 atomic regions from SNP 50464 to 51064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,312 DEBUG Processing 53/719 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,472 DEBUG Processing 170/657 atomic regions from SNP 50764 to 51364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,746 DEBUG Processing 54/719 atomic regions from SNP 15953 to 16553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,881 DEBUG Processing 171/657 atomic regions from SNP 51064 to 51664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,172 DEBUG Processing 55/719 atomic regions from SNP 16253 to 16853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,267 DEBUG Processing 172/657 atomic regions from SNP 51364 to 51964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,488 DEBUG Processing 56/719 atomic regions from SNP 16553 to 17153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,566 DEBUG Processing 173/657 atomic regions from SNP 51664 to 52264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,805 DEBUG Processing 57/719 atomic regions from SNP 16853 to 17453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,883 DEBUG Processing 174/657 atomic regions from SNP 51964 to 52564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,159 DEBUG Processing 58/719 atomic regions from SNP 17153 to 17753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,244 DEBUG Processing 175/657 atomic regions from SNP 52264 to 52864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,527 DEBUG Processing 59/719 atomic regions from SNP 17453 to 18053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,611 DEBUG Processing 176/657 atomic regions from SNP 52564 to 53164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,900 DEBUG Processing 60/719 atomic regions from SNP 17753 to 18353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,947 DEBUG Processing 177/657 atomic regions from SNP 52864 to 53464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,204 DEBUG Processing 61/719 atomic regions from SNP 18053 to 18653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,246 DEBUG Processing 178/657 atomic regions from SNP 53164 to 53764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,566 DEBUG Processing 62/719 atomic regions from SNP 18353 to 18953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,614 DEBUG Processing 179/657 atomic regions from SNP 53464 to 54064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,945 DEBUG Processing 63/719 atomic regions from SNP 18653 to 19253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,970 DEBUG Processing 180/657 atomic regions from SNP 53764 to 54364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,311 DEBUG Processing 64/719 atomic regions from SNP 18953 to 19553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,315 DEBUG Processing 181/657 atomic regions from SNP 54064 to 54664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,635 DEBUG Processing 65/719 atomic regions from SNP 19253 to 19853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,643 DEBUG Processing 182/657 atomic regions from SNP 54364 to 54964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,983 DEBUG Processing 66/719 atomic regions from SNP 19553 to 20153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,998 DEBUG Processing 183/657 atomic regions from SNP 54664 to 55264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,343 DEBUG Processing 184/657 atomic regions from SNP 54964 to 55564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,367 DEBUG Processing 67/719 atomic regions from SNP 19853 to 20453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,656 DEBUG Processing 185/657 atomic regions from SNP 55264 to 55864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,746 DEBUG Processing 68/719 atomic regions from SNP 20153 to 20753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,020 DEBUG Processing 186/657 atomic regions from SNP 55564 to 56164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,126 DEBUG Processing 69/719 atomic regions from SNP 20453 to 21053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,389 DEBUG Processing 187/657 atomic regions from SNP 55864 to 56464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,499 DEBUG Processing 70/719 atomic regions from SNP 20753 to 21353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,798 DEBUG Processing 188/657 atomic regions from SNP 56164 to 56764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,889 DEBUG Processing 71/719 atomic regions from SNP 21053 to 21653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,180 DEBUG Processing 189/657 atomic regions from SNP 56464 to 57064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,255 DEBUG Processing 72/719 atomic regions from SNP 21353 to 21953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,496 DEBUG Processing 190/657 atomic regions from SNP 56764 to 57364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,568 DEBUG Processing 73/719 atomic regions from SNP 21653 to 22253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,719 DEBUG Processing 191/657 atomic regions from SNP 57064 to 57664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,832 DEBUG Processing 74/719 atomic regions from SNP 21953 to 22553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,021 DEBUG Processing 192/657 atomic regions from SNP 57364 to 57964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,112 DEBUG Processing 75/719 atomic regions from SNP 22253 to 22853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,317 DEBUG Processing 193/657 atomic regions from SNP 57664 to 58264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,419 DEBUG Processing 76/719 atomic regions from SNP 22553 to 23153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,624 DEBUG Processing 194/657 atomic regions from SNP 57964 to 58564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,748 DEBUG Processing 77/719 atomic regions from SNP 22853 to 23453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,932 DEBUG Processing 195/657 atomic regions from SNP 58264 to 58864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,085 DEBUG Processing 78/719 atomic regions from SNP 23153 to 23753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,255 DEBUG Processing 196/657 atomic regions from SNP 58564 to 59164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,437 DEBUG Processing 79/719 atomic regions from SNP 23453 to 24053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,601 DEBUG Processing 197/657 atomic regions from SNP 58864 to 59464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,805 DEBUG Processing 80/719 atomic regions from SNP 23753 to 24353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,952 DEBUG Processing 198/657 atomic regions from SNP 59164 to 59764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,149 DEBUG Processing 81/719 atomic regions from SNP 24053 to 24653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,273 DEBUG Processing 199/657 atomic regions from SNP 59464 to 60064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,536 DEBUG Processing 82/719 atomic regions from SNP 24353 to 24953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,593 DEBUG Processing 200/657 atomic regions from SNP 59764 to 60364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,814 DEBUG Processing 83/719 atomic regions from SNP 24653 to 25253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,876 DEBUG Processing 201/657 atomic regions from SNP 60064 to 60664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,119 DEBUG Processing 84/719 atomic regions from SNP 24953 to 25553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,174 DEBUG Processing 202/657 atomic regions from SNP 60364 to 60964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,452 DEBUG Processing 85/719 atomic regions from SNP 25253 to 25853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,504 DEBUG Processing 203/657 atomic regions from SNP 60664 to 61264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,776 DEBUG Processing 86/719 atomic regions from SNP 25553 to 26153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,810 DEBUG Processing 204/657 atomic regions from SNP 60964 to 61564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,107 DEBUG Processing 87/719 atomic regions from SNP 25853 to 26453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,134 DEBUG Processing 205/657 atomic regions from SNP 61264 to 61864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,424 DEBUG Processing 88/719 atomic regions from SNP 26153 to 26753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,469 DEBUG Processing 206/657 atomic regions from SNP 61564 to 62164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,752 DEBUG Processing 89/719 atomic regions from SNP 26453 to 27053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,804 DEBUG Processing 207/657 atomic regions from SNP 61864 to 62464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:21,090 DEBUG Processing 90/719 atomic regions from SNP 26753 to 27353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,141 DEBUG Processing 208/657 atomic regions from SNP 62164 to 62764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:21,419 DEBUG Processing 91/719 atomic regions from SNP 27053 to 27653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,483 DEBUG Processing 209/657 atomic regions from SNP 62464 to 63064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:21,756 DEBUG Processing 92/719 atomic regions from SNP 27353 to 27953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,820 DEBUG Processing 210/657 atomic regions from SNP 62764 to 63364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:22,087 DEBUG Processing 93/719 atomic regions from SNP 27653 to 28253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,129 DEBUG Processing 211/657 atomic regions from SNP 63064 to 63664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:22,457 DEBUG Processing 94/719 atomic regions from SNP 27953 to 28553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,487 DEBUG Processing 212/657 atomic regions from SNP 63364 to 63964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:22,795 DEBUG Processing 95/719 atomic regions from SNP 28253 to 28853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,822 DEBUG Processing 213/657 atomic regions from SNP 63664 to 64264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:23,134 DEBUG Processing 96/719 atomic regions from SNP 28553 to 29153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,160 DEBUG Processing 214/657 atomic regions from SNP 63964 to 64564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:23,484 DEBUG Processing 97/719 atomic regions from SNP 28853 to 29453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,521 DEBUG Processing 215/657 atomic regions from SNP 64264 to 64864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:23,887 DEBUG Processing 216/657 atomic regions from SNP 64564 to 65164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:23,890 DEBUG Processing 98/719 atomic regions from SNP 29153 to 29753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,231 DEBUG Processing 217/657 atomic regions from SNP 64864 to 65464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:24,258 DEBUG Processing 99/719 atomic regions from SNP 29453 to 30053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,587 DEBUG Processing 218/657 atomic regions from SNP 65164 to 65764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:24,641 DEBUG Processing 100/719 atomic regions from SNP 29753 to 30353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,928 DEBUG Processing 219/657 atomic regions from SNP 65464 to 66064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:25,011 DEBUG Processing 101/719 atomic regions from SNP 30053 to 30653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,268 DEBUG Processing 220/657 atomic regions from SNP 65764 to 66364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:25,358 DEBUG Processing 102/719 atomic regions from SNP 30353 to 30953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,615 DEBUG Processing 221/657 atomic regions from SNP 66064 to 66664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:25,637 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:56:25,682 DEBUG chr13: Signal quantile: 0.988. signal threshold: 15. Best RMSEA: 0.009 2025-01-31 09:56:25,722 DEBUG Processing 103/719 atomic regions from SNP 30653 to 31253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,923 DEBUG Processing 222/657 atomic regions from SNP 66364 to 66964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:26,102 DEBUG Processing 104/719 atomic regions from SNP 30953 to 31553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,186 DEBUG Processing 223/657 atomic regions from SNP 66664 to 67264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:26,495 DEBUG Processing 105/719 atomic regions from SNP 31253 to 31853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,504 DEBUG Processing 224/657 atomic regions from SNP 66964 to 67564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:26,871 DEBUG Processing 225/657 atomic regions from SNP 67264 to 67864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:26,888 DEBUG Processing 106/719 atomic regions from SNP 31553 to 32153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,231 DEBUG Processing 226/657 atomic regions from SNP 67564 to 68164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:27,285 DEBUG Processing 107/719 atomic regions from SNP 31853 to 32453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,537 DEBUG Processing 227/657 atomic regions from SNP 67864 to 68464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:27,618 DEBUG Processing 108/719 atomic regions from SNP 32153 to 32753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,847 DEBUG Processing 228/657 atomic regions from SNP 68164 to 68764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:27,979 DEBUG Processing 109/719 atomic regions from SNP 32453 to 33053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,165 DEBUG Processing 229/657 atomic regions from SNP 68464 to 69064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:28,338 DEBUG Processing 110/719 atomic regions from SNP 32753 to 33353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,413 DEBUG Processing 230/657 atomic regions from SNP 68764 to 69364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:28,578 DEBUG Processing 111/719 atomic regions from SNP 33053 to 33653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,628 DEBUG Processing 231/657 atomic regions from SNP 69064 to 69664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:28,845 DEBUG Processing 112/719 atomic regions from SNP 33353 to 33953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,854 DEBUG Processing 232/657 atomic regions from SNP 69364 to 69964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:29,067 DEBUG Processing 233/657 atomic regions from SNP 69664 to 70264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:29,085 DEBUG Processing 113/719 atomic regions from SNP 33653 to 34253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,300 DEBUG chr13 total SNP count: 202481 2025-01-31 09:56:29,300 DEBUG chr13 length: 120421639 2025-01-31 09:56:29,300 DEBUG ----------------------------------------- 2025-01-31 09:56:29,301 INFO Processing SNPs in chr13 2025-01-31 09:56:29,309 DEBUG Processing 234/657 atomic regions from SNP 69964 to 70564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:29,335 DEBUG Processing 114/719 atomic regions from SNP 33953 to 34553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,500 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 202481)] 2025-01-31 09:56:29,511 DEBUG Processing 235/657 atomic regions from SNP 70264 to 70864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:29,555 DEBUG Processing 115/719 atomic regions from SNP 34253 to 34853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,638 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:29,714 DEBUG Processing 236/657 atomic regions from SNP 70564 to 71164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:29,772 DEBUG Processing 116/719 atomic regions from SNP 34553 to 35153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,917 DEBUG Processing 237/657 atomic regions from SNP 70864 to 71464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:29,986 DEBUG Processing 117/719 atomic regions from SNP 34853 to 35453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,128 DEBUG Processing 238/657 atomic regions from SNP 71164 to 71764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:30,210 DEBUG Processing 118/719 atomic regions from SNP 35153 to 35753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,368 DEBUG Processing 239/657 atomic regions from SNP 71464 to 72064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:30,455 DEBUG Processing 119/719 atomic regions from SNP 35453 to 36053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,611 DEBUG Processing 240/657 atomic regions from SNP 71764 to 72364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:30,669 DEBUG Processing 120/719 atomic regions from SNP 35753 to 36353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,861 DEBUG Processing 241/657 atomic regions from SNP 72064 to 72664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:30,899 DEBUG Processing 121/719 atomic regions from SNP 36053 to 36653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,068 DEBUG Processing 242/657 atomic regions from SNP 72364 to 72964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:31,156 DEBUG Processing 122/719 atomic regions from SNP 36353 to 36953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,284 DEBUG Processing 243/657 atomic regions from SNP 72664 to 73264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:31,420 DEBUG Processing 123/719 atomic regions from SNP 36653 to 37253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,539 DEBUG Processing 244/657 atomic regions from SNP 72964 to 73564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:31,664 DEBUG Processing 124/719 atomic regions from SNP 36953 to 37553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,851 DEBUG Processing 245/657 atomic regions from SNP 73264 to 73864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:31,904 DEBUG Processing 125/719 atomic regions from SNP 37253 to 37853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,101 DEBUG Processing 246/657 atomic regions from SNP 73564 to 74164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:32,131 DEBUG Processing 126/719 atomic regions from SNP 37553 to 38153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,347 DEBUG Processing 247/657 atomic regions from SNP 73864 to 74464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:32,348 DEBUG Processing 127/719 atomic regions from SNP 37853 to 38453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,570 DEBUG Processing 128/719 atomic regions from SNP 38153 to 38753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,580 DEBUG Processing 248/657 atomic regions from SNP 74164 to 74764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:32,787 DEBUG Processing 129/719 atomic regions from SNP 38453 to 39053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,788 DEBUG Processing 249/657 atomic regions from SNP 74464 to 75064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:32,997 DEBUG Processing 250/657 atomic regions from SNP 74764 to 75364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:33,010 DEBUG Processing 130/719 atomic regions from SNP 38753 to 39353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,205 DEBUG Processing 251/657 atomic regions from SNP 75064 to 75664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:33,225 DEBUG Processing 131/719 atomic regions from SNP 39053 to 39653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,411 DEBUG Processing 252/657 atomic regions from SNP 75364 to 75964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:33,446 DEBUG Processing 132/719 atomic regions from SNP 39353 to 39953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,633 DEBUG Processing 253/657 atomic regions from SNP 75664 to 76264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:33,726 DEBUG Processing 133/719 atomic regions from SNP 39653 to 40253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,904 DEBUG Processing 254/657 atomic regions from SNP 75964 to 76564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:34,022 DEBUG Processing 134/719 atomic regions from SNP 39953 to 40553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,193 DEBUG Processing 255/657 atomic regions from SNP 76264 to 76864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:34,362 DEBUG Processing 135/719 atomic regions from SNP 40253 to 40853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,566 DEBUG Processing 256/657 atomic regions from SNP 76564 to 77164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:34,703 DEBUG Processing 136/719 atomic regions from SNP 40553 to 41153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,959 DEBUG Processing 257/657 atomic regions from SNP 76864 to 77464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:35,049 DEBUG Processing 137/719 atomic regions from SNP 40853 to 41453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,288 DEBUG Processing 258/657 atomic regions from SNP 77164 to 77764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:35,332 DEBUG Processing 138/719 atomic regions from SNP 41153 to 41753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,573 DEBUG Processing 259/657 atomic regions from SNP 77464 to 78064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:35,610 DEBUG Processing 139/719 atomic regions from SNP 41453 to 42053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,814 DEBUG Processing 260/657 atomic regions from SNP 77764 to 78364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:35,827 DEBUG Processing 140/719 atomic regions from SNP 41753 to 42353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,058 DEBUG Processing 261/657 atomic regions from SNP 78064 to 78664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:36,070 DEBUG Processing 141/719 atomic regions from SNP 42053 to 42653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,273 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:56:36,276 DEBUG chr11: Signal quantile: 0.981. signal threshold: 16. Best RMSEA: 0.007 2025-01-31 09:56:36,329 DEBUG Processing 262/657 atomic regions from SNP 78364 to 78964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:36,331 DEBUG Processing 142/719 atomic regions from SNP 42353 to 42953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,637 DEBUG Processing 143/719 atomic regions from SNP 42653 to 43253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,650 DEBUG Processing 263/657 atomic regions from SNP 78664 to 79264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:36,904 DEBUG Processing 144/719 atomic regions from SNP 42953 to 43553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,944 DEBUG Processing 264/657 atomic regions from SNP 78964 to 79564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:37,184 DEBUG Processing 145/719 atomic regions from SNP 43253 to 43853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,259 DEBUG Processing 265/657 atomic regions from SNP 79264 to 79864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:37,401 DEBUG Processing 146/719 atomic regions from SNP 43553 to 44153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,505 DEBUG Processing 266/657 atomic regions from SNP 79564 to 80164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:37,625 DEBUG Processing 147/719 atomic regions from SNP 43853 to 44453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,777 DEBUG Processing 267/657 atomic regions from SNP 79864 to 80464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:37,889 DEBUG Processing 148/719 atomic regions from SNP 44153 to 44753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,030 DEBUG Processing 268/657 atomic regions from SNP 80164 to 80764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:38,184 DEBUG Processing 149/719 atomic regions from SNP 44453 to 45053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,259 DEBUG Processing 269/657 atomic regions from SNP 80464 to 81064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:38,422 DEBUG Processing 150/719 atomic regions from SNP 44753 to 45353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,493 DEBUG Processing 270/657 atomic regions from SNP 80764 to 81364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:38,638 DEBUG Processing 151/719 atomic regions from SNP 45053 to 45653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,723 DEBUG Processing 271/657 atomic regions from SNP 81064 to 81664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:38,847 DEBUG Processing 152/719 atomic regions from SNP 45353 to 45953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,956 DEBUG Processing 272/657 atomic regions from SNP 81364 to 81964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:39,071 DEBUG Processing 153/719 atomic regions from SNP 45653 to 46253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,201 DEBUG Processing 273/657 atomic regions from SNP 81664 to 82264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:39,309 DEBUG Processing 154/719 atomic regions from SNP 45953 to 46553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,364 DEBUG chr11 total SNP count: 211041 2025-01-31 09:56:39,364 DEBUG chr11 length: 122082543 2025-01-31 09:56:39,364 DEBUG ----------------------------------------- 2025-01-31 09:56:39,364 INFO Processing SNPs in chr11 2025-01-31 09:56:39,412 DEBUG Processing 274/657 atomic regions from SNP 81964 to 82564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:39,532 DEBUG Processing 155/719 atomic regions from SNP 46253 to 46853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,575 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211041)] 2025-01-31 09:56:39,627 DEBUG Processing 275/657 atomic regions from SNP 82264 to 82864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:39,721 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:39,748 DEBUG Processing 156/719 atomic regions from SNP 46553 to 47153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,841 DEBUG Processing 276/657 atomic regions from SNP 82564 to 83164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:39,967 DEBUG Processing 157/719 atomic regions from SNP 46853 to 47453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,082 DEBUG Processing 277/657 atomic regions from SNP 82864 to 83464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:40,230 DEBUG Processing 158/719 atomic regions from SNP 47153 to 47753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,339 DEBUG Processing 278/657 atomic regions from SNP 83164 to 83764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:40,450 DEBUG Processing 159/719 atomic regions from SNP 47453 to 48053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,549 DEBUG Processing 279/657 atomic regions from SNP 83464 to 84064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:40,693 DEBUG Processing 160/719 atomic regions from SNP 47753 to 48353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,752 DEBUG Processing 280/657 atomic regions from SNP 83764 to 84364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:40,929 DEBUG Processing 161/719 atomic regions from SNP 48053 to 48653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,951 DEBUG Processing 281/657 atomic regions from SNP 84064 to 84664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:41,152 DEBUG Processing 282/657 atomic regions from SNP 84364 to 84964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:41,173 DEBUG Processing 162/719 atomic regions from SNP 48353 to 48953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,360 DEBUG Processing 283/657 atomic regions from SNP 84664 to 85264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:41,398 DEBUG Processing 163/719 atomic regions from SNP 48653 to 49253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,602 DEBUG Processing 284/657 atomic regions from SNP 84964 to 85564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:41,640 DEBUG Processing 164/719 atomic regions from SNP 48953 to 49553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,813 DEBUG Processing 285/657 atomic regions from SNP 85264 to 85864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:41,859 DEBUG Processing 165/719 atomic regions from SNP 49253 to 49853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,037 DEBUG Processing 286/657 atomic regions from SNP 85564 to 86164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:42,070 DEBUG Processing 166/719 atomic regions from SNP 49553 to 50153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,245 DEBUG Processing 287/657 atomic regions from SNP 85864 to 86464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:42,279 DEBUG Processing 167/719 atomic regions from SNP 49853 to 50453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,447 DEBUG Processing 288/657 atomic regions from SNP 86164 to 86764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:42,503 DEBUG Processing 168/719 atomic regions from SNP 50153 to 50753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,650 DEBUG Processing 289/657 atomic regions from SNP 86464 to 87064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:42,727 DEBUG Processing 169/719 atomic regions from SNP 50453 to 51053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,851 DEBUG Processing 290/657 atomic regions from SNP 86764 to 87364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:42,936 DEBUG Processing 170/719 atomic regions from SNP 50753 to 51353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,072 DEBUG Processing 291/657 atomic regions from SNP 87064 to 87664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:43,151 DEBUG Processing 171/719 atomic regions from SNP 51053 to 51653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,331 DEBUG Processing 292/657 atomic regions from SNP 87364 to 87964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:43,412 DEBUG Processing 172/719 atomic regions from SNP 51353 to 51953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,593 DEBUG Processing 293/657 atomic regions from SNP 87664 to 88264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:43,701 DEBUG Processing 173/719 atomic regions from SNP 51653 to 52253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,860 DEBUG Processing 294/657 atomic regions from SNP 87964 to 88564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:44,000 DEBUG Processing 174/719 atomic regions from SNP 51953 to 52553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,141 DEBUG Processing 295/657 atomic regions from SNP 88264 to 88864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:44,247 DEBUG Processing 175/719 atomic regions from SNP 52253 to 52853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,351 DEBUG Processing 296/657 atomic regions from SNP 88564 to 89164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:44,478 DEBUG Processing 176/719 atomic regions from SNP 52553 to 53153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,564 DEBUG Processing 297/657 atomic regions from SNP 88864 to 89464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:44,709 DEBUG Processing 177/719 atomic regions from SNP 52853 to 53453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,809 DEBUG Processing 298/657 atomic regions from SNP 89164 to 89764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:44,949 DEBUG Processing 178/719 atomic regions from SNP 53153 to 53753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,085 DEBUG Processing 299/657 atomic regions from SNP 89464 to 90064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:45,220 DEBUG Processing 179/719 atomic regions from SNP 53453 to 54053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,382 DEBUG Processing 300/657 atomic regions from SNP 89764 to 90364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:45,445 DEBUG Processing 180/719 atomic regions from SNP 53753 to 54353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,600 DEBUG Processing 301/657 atomic regions from SNP 90064 to 90664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:45,666 DEBUG Processing 181/719 atomic regions from SNP 54053 to 54653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,800 DEBUG Processing 302/657 atomic regions from SNP 90364 to 90964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:45,906 DEBUG Processing 182/719 atomic regions from SNP 54353 to 54953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,021 DEBUG Processing 303/657 atomic regions from SNP 90664 to 91264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:46,127 DEBUG Processing 183/719 atomic regions from SNP 54653 to 55253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,267 DEBUG Processing 304/657 atomic regions from SNP 90964 to 91564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:46,356 DEBUG Processing 184/719 atomic regions from SNP 54953 to 55553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,491 DEBUG Processing 305/657 atomic regions from SNP 91264 to 91864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:46,588 DEBUG Processing 185/719 atomic regions from SNP 55253 to 55853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,702 DEBUG Processing 306/657 atomic regions from SNP 91564 to 92164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:46,810 DEBUG Processing 186/719 atomic regions from SNP 55553 to 56153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,933 DEBUG Processing 307/657 atomic regions from SNP 91864 to 92464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:47,014 DEBUG Processing 187/719 atomic regions from SNP 55853 to 56453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,227 DEBUG Processing 308/657 atomic regions from SNP 92164 to 92764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:47,293 DEBUG Processing 188/719 atomic regions from SNP 56153 to 56753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,560 DEBUG Processing 309/657 atomic regions from SNP 92464 to 93064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:47,590 DEBUG Processing 189/719 atomic regions from SNP 56453 to 57053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,886 DEBUG Processing 190/719 atomic regions from SNP 56753 to 57353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,888 DEBUG Processing 310/657 atomic regions from SNP 92764 to 93364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:48,177 DEBUG Processing 191/719 atomic regions from SNP 57053 to 57653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,198 DEBUG Processing 311/657 atomic regions from SNP 93064 to 93664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:48,401 DEBUG Processing 192/719 atomic regions from SNP 57353 to 57953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,412 DEBUG Processing 312/657 atomic regions from SNP 93364 to 93964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:48,605 DEBUG Processing 193/719 atomic regions from SNP 57653 to 58253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,614 DEBUG Processing 313/657 atomic regions from SNP 93664 to 94264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:48,877 DEBUG Processing 194/719 atomic regions from SNP 57953 to 58553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,892 DEBUG Processing 314/657 atomic regions from SNP 93964 to 94564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:49,164 DEBUG Processing 195/719 atomic regions from SNP 58253 to 58853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,193 DEBUG Processing 315/657 atomic regions from SNP 94264 to 94864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:49,436 DEBUG Processing 196/719 atomic regions from SNP 58553 to 59153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,442 DEBUG Processing 316/657 atomic regions from SNP 94564 to 95164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:49,719 DEBUG Processing 197/719 atomic regions from SNP 58853 to 59453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,727 DEBUG Processing 317/657 atomic regions from SNP 94864 to 95464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:50,006 DEBUG Processing 198/719 atomic regions from SNP 59153 to 59753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,038 DEBUG Processing 318/657 atomic regions from SNP 95164 to 95764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:50,224 DEBUG Processing 199/719 atomic regions from SNP 59453 to 60053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,262 DEBUG Processing 319/657 atomic regions from SNP 95464 to 96064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:50,442 DEBUG Processing 200/719 atomic regions from SNP 59753 to 60353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,473 DEBUG Processing 320/657 atomic regions from SNP 95764 to 96364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:50,651 DEBUG Processing 201/719 atomic regions from SNP 60053 to 60653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,692 DEBUG Processing 321/657 atomic regions from SNP 96064 to 96664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:50,866 DEBUG Processing 202/719 atomic regions from SNP 60353 to 60953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,924 DEBUG Processing 322/657 atomic regions from SNP 96364 to 96964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:51,083 DEBUG Processing 203/719 atomic regions from SNP 60653 to 61253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,155 DEBUG Processing 323/657 atomic regions from SNP 96664 to 97264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:51,298 DEBUG Processing 204/719 atomic regions from SNP 60953 to 61553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,376 DEBUG Processing 324/657 atomic regions from SNP 96964 to 97564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:51,511 DEBUG Processing 205/719 atomic regions from SNP 61253 to 61853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,585 DEBUG Processing 325/657 atomic regions from SNP 97264 to 97864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:51,723 DEBUG Processing 206/719 atomic regions from SNP 61553 to 62153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,810 DEBUG Processing 326/657 atomic regions from SNP 97564 to 98164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:51,936 DEBUG Processing 207/719 atomic regions from SNP 61853 to 62453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,025 DEBUG Processing 327/657 atomic regions from SNP 97864 to 98464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:52,149 DEBUG Processing 208/719 atomic regions from SNP 62153 to 62753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,225 DEBUG Processing 328/657 atomic regions from SNP 98164 to 98764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:52,367 DEBUG Processing 209/719 atomic regions from SNP 62453 to 63053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,425 DEBUG Processing 329/657 atomic regions from SNP 98464 to 99064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:52,611 DEBUG Processing 210/719 atomic regions from SNP 62753 to 63353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,667 DEBUG Processing 330/657 atomic regions from SNP 98764 to 99364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:52,875 DEBUG Processing 211/719 atomic regions from SNP 63053 to 63653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,908 DEBUG Processing 331/657 atomic regions from SNP 99064 to 99664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:53,115 DEBUG Processing 212/719 atomic regions from SNP 63353 to 63953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,117 DEBUG Processing 332/657 atomic regions from SNP 99364 to 99964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:53,322 DEBUG Processing 333/657 atomic regions from SNP 99664 to 100264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:53,333 DEBUG Processing 213/719 atomic regions from SNP 63653 to 64253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,535 DEBUG Processing 334/657 atomic regions from SNP 99964 to 100564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:53,554 DEBUG Processing 214/719 atomic regions from SNP 63953 to 64553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,764 DEBUG Processing 335/657 atomic regions from SNP 100264 to 100864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:53,824 DEBUG Processing 215/719 atomic regions from SNP 64253 to 64853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,966 DEBUG Processing 336/657 atomic regions from SNP 100564 to 101164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:54,044 DEBUG Processing 216/719 atomic regions from SNP 64553 to 65153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,085 DEBUG Segmenting atomic regions: 2025-01-31 09:56:54,169 DEBUG Processing 337/657 atomic regions from SNP 100864 to 101464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:54,174 DEBUG Processing 1/673 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,287 DEBUG Processing 217/719 atomic regions from SNP 64853 to 65453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,394 DEBUG Processing 2/673 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,410 DEBUG Processing 338/657 atomic regions from SNP 101164 to 101764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:54,527 DEBUG Processing 218/719 atomic regions from SNP 65153 to 65753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,601 DEBUG Processing 3/673 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,627 DEBUG Processing 339/657 atomic regions from SNP 101464 to 102064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:54,761 DEBUG Processing 219/719 atomic regions from SNP 65453 to 66053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,822 DEBUG Processing 4/673 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,840 DEBUG Processing 340/657 atomic regions from SNP 101764 to 102364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:54,978 DEBUG Processing 220/719 atomic regions from SNP 65753 to 66353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,031 DEBUG Processing 5/673 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,052 DEBUG Processing 341/657 atomic regions from SNP 102064 to 102664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:55,193 DEBUG Processing 221/719 atomic regions from SNP 66053 to 66653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,237 DEBUG Processing 6/673 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,262 DEBUG Processing 342/657 atomic regions from SNP 102364 to 102964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:55,406 DEBUG Processing 222/719 atomic regions from SNP 66353 to 66953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,439 DEBUG Processing 7/673 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,472 DEBUG Processing 343/657 atomic regions from SNP 102664 to 103264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:55,624 DEBUG Processing 223/719 atomic regions from SNP 66653 to 67253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,646 DEBUG Processing 8/673 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,685 DEBUG Processing 344/657 atomic regions from SNP 102964 to 103564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:55,841 DEBUG Processing 224/719 atomic regions from SNP 66953 to 67553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,849 DEBUG Processing 9/673 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,895 DEBUG Processing 345/657 atomic regions from SNP 103264 to 103864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:56,051 DEBUG Processing 10/673 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,057 DEBUG Processing 225/719 atomic regions from SNP 67253 to 67853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:56,104 DEBUG Processing 346/657 atomic regions from SNP 103564 to 104164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:56,257 DEBUG Processing 11/673 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,274 DEBUG Processing 226/719 atomic regions from SNP 67553 to 68153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:56,324 DEBUG Processing 347/657 atomic regions from SNP 103864 to 104464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:56,460 DEBUG Processing 12/673 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,486 DEBUG Processing 227/719 atomic regions from SNP 67853 to 68453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:56,554 DEBUG Processing 348/657 atomic regions from SNP 104164 to 104764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:56,658 DEBUG Processing 13/673 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,699 DEBUG Processing 228/719 atomic regions from SNP 68153 to 68753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:56,764 DEBUG Processing 349/657 atomic regions from SNP 104464 to 105064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:56,857 DEBUG Processing 14/673 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,913 DEBUG Processing 229/719 atomic regions from SNP 68453 to 69053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:56,985 DEBUG Processing 350/657 atomic regions from SNP 104764 to 105364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:57,061 DEBUG Processing 15/673 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,133 DEBUG Processing 230/719 atomic regions from SNP 68753 to 69353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:57,203 DEBUG Processing 351/657 atomic regions from SNP 105064 to 105664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:57,266 DEBUG Processing 16/673 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,365 DEBUG Processing 231/719 atomic regions from SNP 69053 to 69653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:57,433 DEBUG Processing 352/657 atomic regions from SNP 105364 to 105964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:57,476 DEBUG Processing 17/673 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,613 DEBUG Processing 232/719 atomic regions from SNP 69353 to 69953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:57,675 DEBUG Processing 353/657 atomic regions from SNP 105664 to 106264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:57,681 DEBUG Processing 18/673 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,870 DEBUG Processing 233/719 atomic regions from SNP 69653 to 70253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:57,884 DEBUG Processing 19/673 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,916 DEBUG Processing 354/657 atomic regions from SNP 105964 to 106564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:58,084 DEBUG Processing 20/673 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,103 DEBUG Processing 234/719 atomic regions from SNP 69953 to 70553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:58,129 DEBUG Processing 355/657 atomic regions from SNP 106264 to 106864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:58,280 DEBUG Processing 21/673 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,329 DEBUG Processing 356/657 atomic regions from SNP 106564 to 107164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:58,330 DEBUG Processing 235/719 atomic regions from SNP 70253 to 70853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:58,477 DEBUG Processing 22/673 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,530 DEBUG Processing 357/657 atomic regions from SNP 106864 to 107464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:58,571 DEBUG Processing 236/719 atomic regions from SNP 70553 to 71153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:58,672 DEBUG Processing 23/673 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,731 DEBUG Processing 358/657 atomic regions from SNP 107164 to 107764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:58,801 DEBUG Processing 237/719 atomic regions from SNP 70853 to 71453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:58,865 DEBUG Processing 24/673 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,934 DEBUG Processing 359/657 atomic regions from SNP 107464 to 108064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:59,054 DEBUG Processing 238/719 atomic regions from SNP 71153 to 71753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:59,059 DEBUG Processing 25/673 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,133 DEBUG Processing 360/657 atomic regions from SNP 107764 to 108364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:59,251 DEBUG Processing 26/673 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,302 DEBUG Processing 239/719 atomic regions from SNP 71453 to 72053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:59,335 DEBUG Processing 361/657 atomic regions from SNP 108064 to 108664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:59,444 DEBUG Processing 27/673 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,534 DEBUG Processing 362/657 atomic regions from SNP 108364 to 108964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:59,552 DEBUG Processing 240/719 atomic regions from SNP 71753 to 72353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:59,638 DEBUG Processing 28/673 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,734 DEBUG Processing 363/657 atomic regions from SNP 108664 to 109264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:59,805 DEBUG Processing 241/719 atomic regions from SNP 72053 to 72653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:59,831 DEBUG Processing 29/673 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,929 DEBUG Processing 364/657 atomic regions from SNP 108964 to 109564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:00,022 DEBUG Processing 30/673 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,047 DEBUG Processing 242/719 atomic regions from SNP 72353 to 72953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:00,125 DEBUG Processing 365/657 atomic regions from SNP 109264 to 109864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:00,217 DEBUG Processing 31/673 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,290 DEBUG Processing 243/719 atomic regions from SNP 72653 to 73253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:00,325 DEBUG Processing 366/657 atomic regions from SNP 109564 to 110164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:00,413 DEBUG Processing 32/673 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,514 DEBUG Processing 244/719 atomic regions from SNP 72953 to 73553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:00,523 DEBUG Processing 367/657 atomic regions from SNP 109864 to 110464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:00,606 DEBUG Processing 33/673 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,723 DEBUG Processing 368/657 atomic regions from SNP 110164 to 110764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:00,738 DEBUG Processing 245/719 atomic regions from SNP 73253 to 73853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:00,803 DEBUG Processing 34/673 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,943 DEBUG Processing 369/657 atomic regions from SNP 110464 to 111064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:00,960 DEBUG Processing 246/719 atomic regions from SNP 73553 to 74153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:00,998 DEBUG Processing 35/673 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,162 DEBUG Processing 370/657 atomic regions from SNP 110764 to 111364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:01,186 DEBUG Processing 247/719 atomic regions from SNP 73853 to 74453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:01,195 DEBUG Processing 36/673 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,361 DEBUG Processing 371/657 atomic regions from SNP 111064 to 111664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:01,391 DEBUG Processing 37/673 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,417 DEBUG Processing 248/719 atomic regions from SNP 74153 to 74753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:01,558 DEBUG Processing 372/657 atomic regions from SNP 111364 to 111964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:01,587 DEBUG Processing 38/673 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,670 DEBUG Processing 249/719 atomic regions from SNP 74453 to 75053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:01,755 DEBUG Processing 373/657 atomic regions from SNP 111664 to 112264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:01,782 DEBUG Processing 39/673 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,916 DEBUG Processing 250/719 atomic regions from SNP 74753 to 75353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:01,953 DEBUG Processing 374/657 atomic regions from SNP 111964 to 112564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:01,977 DEBUG Processing 40/673 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,150 DEBUG Processing 251/719 atomic regions from SNP 75053 to 75653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:02,156 DEBUG Processing 375/657 atomic regions from SNP 112264 to 112864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:02,176 DEBUG Processing 41/673 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,370 DEBUG Processing 376/657 atomic regions from SNP 112564 to 113164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:02,382 DEBUG Processing 42/673 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,404 DEBUG Processing 252/719 atomic regions from SNP 75353 to 75953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:02,575 DEBUG Processing 377/657 atomic regions from SNP 112864 to 113464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:02,584 DEBUG Processing 43/673 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,623 DEBUG Processing 253/719 atomic regions from SNP 75653 to 76253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:02,779 DEBUG Processing 378/657 atomic regions from SNP 113164 to 113764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:02,780 DEBUG Processing 44/673 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,843 DEBUG Processing 254/719 atomic regions from SNP 75953 to 76553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:02,981 DEBUG Processing 45/673 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,988 DEBUG Processing 379/657 atomic regions from SNP 113464 to 114064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:03,064 DEBUG Processing 255/719 atomic regions from SNP 76253 to 76853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:03,178 DEBUG Processing 46/673 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,204 DEBUG Processing 380/657 atomic regions from SNP 113764 to 114364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:03,286 DEBUG Processing 256/719 atomic regions from SNP 76553 to 77153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:03,376 DEBUG Processing 47/673 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,409 DEBUG Processing 381/657 atomic regions from SNP 114064 to 114664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:03,506 DEBUG Processing 257/719 atomic regions from SNP 76853 to 77453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:03,571 DEBUG Processing 48/673 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,610 DEBUG Processing 382/657 atomic regions from SNP 114364 to 114964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:03,731 DEBUG Processing 258/719 atomic regions from SNP 77153 to 77753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:03,771 DEBUG Processing 49/673 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,816 DEBUG Processing 383/657 atomic regions from SNP 114664 to 115264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:03,952 DEBUG Processing 259/719 atomic regions from SNP 77453 to 78053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:03,971 DEBUG Processing 50/673 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,052 DEBUG Processing 384/657 atomic regions from SNP 114964 to 115564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:04,172 DEBUG Processing 51/673 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,176 DEBUG Processing 260/719 atomic regions from SNP 77753 to 78353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:04,265 DEBUG Processing 385/657 atomic regions from SNP 115264 to 115864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:04,375 DEBUG Processing 52/673 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,395 DEBUG Processing 261/719 atomic regions from SNP 78053 to 78653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:04,491 DEBUG Processing 386/657 atomic regions from SNP 115564 to 116164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:04,573 DEBUG Processing 53/673 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,611 DEBUG Processing 262/719 atomic regions from SNP 78353 to 78953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:04,713 DEBUG Processing 387/657 atomic regions from SNP 115864 to 116464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:04,767 DEBUG Processing 54/673 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,833 DEBUG Processing 263/719 atomic regions from SNP 78653 to 79253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:04,934 DEBUG Processing 388/657 atomic regions from SNP 116164 to 116764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:04,963 DEBUG Processing 55/673 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,050 DEBUG Processing 264/719 atomic regions from SNP 78953 to 79553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:05,156 DEBUG Processing 389/657 atomic regions from SNP 116464 to 117064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:05,158 DEBUG Processing 56/673 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,270 DEBUG Processing 265/719 atomic regions from SNP 79253 to 79853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:05,354 DEBUG Processing 57/673 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,357 DEBUG Processing 390/657 atomic regions from SNP 116764 to 117364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:05,447 DEBUG Segmenting atomic regions: 2025-01-31 09:57:05,492 DEBUG Processing 266/719 atomic regions from SNP 79553 to 80153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:05,540 DEBUG Processing 1/702 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,552 DEBUG Processing 58/673 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,558 DEBUG Processing 391/657 atomic regions from SNP 117064 to 117664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:05,718 DEBUG Processing 267/719 atomic regions from SNP 79853 to 80453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:05,752 DEBUG Processing 59/673 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,760 DEBUG Processing 392/657 atomic regions from SNP 117364 to 117964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:05,805 DEBUG Processing 2/702 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,944 DEBUG Processing 268/719 atomic regions from SNP 80153 to 80753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:05,959 DEBUG Processing 60/673 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,965 DEBUG Processing 393/657 atomic regions from SNP 117664 to 118264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:06,051 DEBUG Processing 3/702 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,168 DEBUG Processing 394/657 atomic regions from SNP 117964 to 118564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:06,171 DEBUG Processing 269/719 atomic regions from SNP 80453 to 81053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:06,184 DEBUG Processing 61/673 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,276 DEBUG Processing 4/702 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,372 DEBUG Processing 395/657 atomic regions from SNP 118264 to 118864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:06,395 DEBUG Processing 62/673 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,405 DEBUG Processing 270/719 atomic regions from SNP 80753 to 81353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:06,502 DEBUG Processing 5/702 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,576 DEBUG Processing 396/657 atomic regions from SNP 118564 to 119164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:06,595 DEBUG Processing 63/673 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,633 DEBUG Processing 271/719 atomic regions from SNP 81053 to 81653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:06,745 DEBUG Processing 6/702 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,780 DEBUG Processing 397/657 atomic regions from SNP 118864 to 119464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:06,794 DEBUG Processing 64/673 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,883 DEBUG Processing 272/719 atomic regions from SNP 81353 to 81953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:06,985 DEBUG Processing 398/657 atomic regions from SNP 119164 to 119764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:06,994 DEBUG Processing 65/673 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,002 DEBUG Processing 7/702 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,108 DEBUG Processing 273/719 atomic regions from SNP 81653 to 82253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:07,194 DEBUG Processing 399/657 atomic regions from SNP 119464 to 120064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:07,198 DEBUG Processing 66/673 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,265 DEBUG Processing 8/702 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,331 DEBUG Processing 274/719 atomic regions from SNP 81953 to 82553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:07,395 DEBUG Processing 400/657 atomic regions from SNP 119764 to 120364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:07,395 DEBUG Processing 67/673 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,495 DEBUG Processing 9/702 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,551 DEBUG Processing 275/719 atomic regions from SNP 82253 to 82853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:07,591 DEBUG Processing 68/673 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,596 DEBUG Processing 401/657 atomic regions from SNP 120064 to 120664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:07,733 DEBUG Processing 10/702 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,771 DEBUG Processing 276/719 atomic regions from SNP 82553 to 83153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:07,788 DEBUG Processing 69/673 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,801 DEBUG Processing 402/657 atomic regions from SNP 120364 to 120964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:07,982 DEBUG Processing 11/702 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,990 DEBUG Processing 70/673 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,993 DEBUG Processing 277/719 atomic regions from SNP 82853 to 83453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:08,018 DEBUG Processing 403/657 atomic regions from SNP 120664 to 121264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:08,195 DEBUG Processing 71/673 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,220 DEBUG Processing 278/719 atomic regions from SNP 83153 to 83753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:08,230 DEBUG Processing 404/657 atomic regions from SNP 120964 to 121564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:08,240 DEBUG Processing 12/702 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,393 DEBUG Processing 72/673 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,452 DEBUG Processing 405/657 atomic regions from SNP 121264 to 121864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:08,467 DEBUG Processing 279/719 atomic regions from SNP 83453 to 84053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:08,498 DEBUG Processing 13/702 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,590 DEBUG Processing 73/673 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,687 DEBUG Processing 406/657 atomic regions from SNP 121564 to 122164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:08,734 DEBUG Processing 280/719 atomic regions from SNP 83753 to 84353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:08,746 DEBUG Processing 14/702 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,787 DEBUG Processing 74/673 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,922 DEBUG Processing 407/657 atomic regions from SNP 121864 to 122464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:08,972 DEBUG Processing 15/702 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,975 DEBUG Processing 281/719 atomic regions from SNP 84053 to 84653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:08,987 DEBUG Processing 75/673 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,139 DEBUG Processing 408/657 atomic regions from SNP 122164 to 122764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:09,191 DEBUG Processing 76/673 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,208 DEBUG Processing 282/719 atomic regions from SNP 84353 to 84953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:09,216 DEBUG Processing 16/702 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,346 DEBUG Processing 409/657 atomic regions from SNP 122464 to 123064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:09,399 DEBUG Processing 77/673 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,438 DEBUG Processing 283/719 atomic regions from SNP 84653 to 85253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:09,463 DEBUG Processing 17/702 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,553 DEBUG Processing 410/657 atomic regions from SNP 122764 to 123364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:09,603 DEBUG Processing 78/673 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,666 DEBUG Processing 284/719 atomic regions from SNP 84953 to 85553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:09,722 DEBUG Processing 18/702 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,760 DEBUG Processing 411/657 atomic regions from SNP 123064 to 123664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:09,803 DEBUG Processing 79/673 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,896 DEBUG Processing 285/719 atomic regions from SNP 85253 to 85853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:09,967 DEBUG Processing 412/657 atomic regions from SNP 123364 to 123964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:09,967 DEBUG Processing 19/702 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,003 DEBUG Processing 80/673 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,126 DEBUG Processing 286/719 atomic regions from SNP 85553 to 86153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:10,174 DEBUG Processing 413/657 atomic regions from SNP 123664 to 124264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:10,204 DEBUG Processing 81/673 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,212 DEBUG Processing 20/702 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,353 DEBUG Processing 287/719 atomic regions from SNP 85853 to 86453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:10,381 DEBUG Processing 414/657 atomic regions from SNP 123964 to 124564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:10,433 DEBUG Processing 82/673 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,485 DEBUG Processing 21/702 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,575 DEBUG Processing 288/719 atomic regions from SNP 86153 to 86753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:10,584 DEBUG Processing 415/657 atomic regions from SNP 124264 to 124864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:10,639 DEBUG Processing 83/673 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,743 DEBUG Processing 22/702 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,792 DEBUG Processing 416/657 atomic regions from SNP 124564 to 125164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:10,800 DEBUG Processing 289/719 atomic regions from SNP 86453 to 87053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:10,842 DEBUG Processing 84/673 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,976 DEBUG Processing 23/702 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,001 DEBUG Processing 417/657 atomic regions from SNP 124864 to 125464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:11,023 DEBUG Processing 290/719 atomic regions from SNP 86753 to 87353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:11,049 DEBUG Processing 85/673 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,197 DEBUG Processing 24/702 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,215 DEBUG Processing 418/657 atomic regions from SNP 125164 to 125764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:11,246 DEBUG Processing 291/719 atomic regions from SNP 87053 to 87653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:11,255 DEBUG Processing 86/673 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,421 DEBUG Processing 25/702 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,422 DEBUG Processing 419/657 atomic regions from SNP 125464 to 126064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:11,458 DEBUG Processing 87/673 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,471 DEBUG Processing 292/719 atomic regions from SNP 87353 to 87953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:11,628 DEBUG Processing 420/657 atomic regions from SNP 125764 to 126364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:11,638 DEBUG Processing 26/702 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,658 DEBUG Processing 88/673 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,692 DEBUG Processing 293/719 atomic regions from SNP 87653 to 88253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:11,831 DEBUG Processing 421/657 atomic regions from SNP 126064 to 126664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:11,854 DEBUG Processing 89/673 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,862 DEBUG Processing 27/702 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,918 DEBUG Processing 294/719 atomic regions from SNP 87953 to 88553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:12,033 DEBUG Processing 422/657 atomic regions from SNP 126364 to 126964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:12,051 DEBUG Processing 90/673 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,083 DEBUG Processing 28/702 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,138 DEBUG Processing 295/719 atomic regions from SNP 88253 to 88853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:12,240 DEBUG Processing 423/657 atomic regions from SNP 126664 to 127264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:12,253 DEBUG Processing 91/673 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,308 DEBUG Processing 29/702 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,366 DEBUG Processing 296/719 atomic regions from SNP 88553 to 89153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:12,457 DEBUG Processing 424/657 atomic regions from SNP 126964 to 127564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:12,458 DEBUG Processing 92/673 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,524 DEBUG Processing 30/702 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,584 DEBUG Processing 297/719 atomic regions from SNP 88853 to 89453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:12,658 DEBUG Processing 93/673 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,662 DEBUG Processing 425/657 atomic regions from SNP 127264 to 127864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:12,742 DEBUG Processing 31/702 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,803 DEBUG Processing 298/719 atomic regions from SNP 89153 to 89753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:12,855 DEBUG Processing 94/673 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,867 DEBUG Processing 426/657 atomic regions from SNP 127564 to 128164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:12,959 DEBUG Processing 32/702 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,025 DEBUG Processing 299/719 atomic regions from SNP 89453 to 90053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:13,056 DEBUG Processing 95/673 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,072 DEBUG Processing 427/657 atomic regions from SNP 127864 to 128464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:13,180 DEBUG Processing 33/702 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,246 DEBUG Processing 300/719 atomic regions from SNP 89753 to 90353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:13,257 DEBUG Processing 96/673 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,278 DEBUG Processing 428/657 atomic regions from SNP 128164 to 128764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:13,401 DEBUG Processing 34/702 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,457 DEBUG Processing 97/673 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,472 DEBUG Processing 301/719 atomic regions from SNP 90053 to 90653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:13,484 DEBUG Processing 429/657 atomic regions from SNP 128464 to 129064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:13,640 DEBUG Processing 35/702 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,657 DEBUG Processing 98/673 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,688 DEBUG Processing 430/657 atomic regions from SNP 128764 to 129364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:13,723 DEBUG Processing 302/719 atomic regions from SNP 90353 to 90953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:13,859 DEBUG Processing 99/673 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,866 DEBUG Processing 36/702 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,889 DEBUG Processing 431/657 atomic regions from SNP 129064 to 129664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:13,975 DEBUG Processing 303/719 atomic regions from SNP 90653 to 91253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:14,059 DEBUG Processing 100/673 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,092 DEBUG Processing 37/702 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,096 DEBUG Processing 432/657 atomic regions from SNP 129364 to 129964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:14,219 DEBUG Processing 304/719 atomic regions from SNP 90953 to 91553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:14,263 DEBUG Processing 101/673 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,303 DEBUG Processing 433/657 atomic regions from SNP 129664 to 130264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:14,318 DEBUG Processing 38/702 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,448 DEBUG Processing 305/719 atomic regions from SNP 91253 to 91853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:14,498 DEBUG Processing 102/673 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,522 DEBUG Processing 434/657 atomic regions from SNP 129964 to 130564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:14,551 DEBUG Processing 39/702 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,666 DEBUG Processing 306/719 atomic regions from SNP 91553 to 92153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:14,727 DEBUG Processing 435/657 atomic regions from SNP 130264 to 130864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:14,741 DEBUG Processing 103/673 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,773 DEBUG Processing 40/702 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,886 DEBUG Processing 307/719 atomic regions from SNP 91853 to 92453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:14,929 DEBUG Processing 436/657 atomic regions from SNP 130564 to 131164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:14,980 DEBUG Processing 104/673 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,004 DEBUG Processing 41/702 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,108 DEBUG Processing 308/719 atomic regions from SNP 92153 to 92753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:15,132 DEBUG Processing 437/657 atomic regions from SNP 130864 to 131464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:15,227 DEBUG Processing 105/673 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,236 DEBUG Processing 42/702 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,325 DEBUG Processing 309/719 atomic regions from SNP 92453 to 93053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:15,330 DEBUG Processing 438/657 atomic regions from SNP 131164 to 131764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:15,468 DEBUG Processing 43/702 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,489 DEBUG Processing 106/673 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,532 DEBUG Processing 439/657 atomic regions from SNP 131464 to 132064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:15,540 DEBUG Processing 310/719 atomic regions from SNP 92753 to 93353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:15,695 DEBUG Processing 44/702 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,720 DEBUG Processing 107/673 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,740 DEBUG Processing 440/657 atomic regions from SNP 131764 to 132364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:15,759 DEBUG Processing 311/719 atomic regions from SNP 93053 to 93653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:15,923 DEBUG Processing 45/702 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,931 DEBUG Processing 108/673 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,955 DEBUG Processing 441/657 atomic regions from SNP 132064 to 132664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:15,995 DEBUG Processing 312/719 atomic regions from SNP 93353 to 93953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:16,140 DEBUG Processing 109/673 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,152 DEBUG Processing 46/702 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,167 DEBUG Processing 442/657 atomic regions from SNP 132364 to 132964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:16,217 DEBUG Processing 313/719 atomic regions from SNP 93653 to 94253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:16,342 DEBUG Processing 110/673 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,371 DEBUG Processing 47/702 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,372 DEBUG Processing 443/657 atomic regions from SNP 132664 to 133264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:16,409 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:57:16,450 DEBUG Processing 314/719 atomic regions from SNP 93953 to 94553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:16,540 DEBUG Processing 111/673 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,574 DEBUG Processing 444/657 atomic regions from SNP 132964 to 133564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:16,588 DEBUG Processing 48/702 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,688 DEBUG Processing 315/719 atomic regions from SNP 94253 to 94853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:16,747 DEBUG Processing 112/673 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,780 DEBUG Processing 445/657 atomic regions from SNP 133264 to 133864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:16,801 DEBUG Processing 49/702 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,924 DEBUG Processing 316/719 atomic regions from SNP 94553 to 95153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:16,971 DEBUG Processing 113/673 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,000 DEBUG Processing 446/657 atomic regions from SNP 133564 to 134164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:17,040 DEBUG Processing 50/702 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,174 DEBUG Processing 317/719 atomic regions from SNP 94853 to 95453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:17,202 DEBUG Processing 114/673 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,206 DEBUG Processing 447/657 atomic regions from SNP 133864 to 134464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:17,279 DEBUG Processing 51/702 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,413 DEBUG Processing 448/657 atomic regions from SNP 134164 to 134764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:17,420 DEBUG Processing 318/719 atomic regions from SNP 95153 to 95753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:17,436 DEBUG Processing 115/673 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,503 DEBUG Processing 52/702 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,616 DEBUG Processing 449/657 atomic regions from SNP 134464 to 135064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:17,665 DEBUG Processing 116/673 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,681 DEBUG Processing 319/719 atomic regions from SNP 95453 to 96053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:17,735 DEBUG Processing 53/702 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,861 DEBUG Processing 450/657 atomic regions from SNP 134764 to 135364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:17,865 DEBUG Processing 117/673 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,937 DEBUG Processing 320/719 atomic regions from SNP 95753 to 96353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:17,956 DEBUG Processing 54/702 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,062 DEBUG Processing 451/657 atomic regions from SNP 135064 to 135664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:18,072 DEBUG Processing 118/673 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,178 DEBUG Processing 55/702 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,201 DEBUG Processing 321/719 atomic regions from SNP 96053 to 96653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:18,268 DEBUG Processing 452/657 atomic regions from SNP 135364 to 135964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:18,291 DEBUG Processing 119/673 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,402 DEBUG Processing 56/702 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,460 DEBUG Processing 322/719 atomic regions from SNP 96353 to 96953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:18,474 DEBUG Processing 453/657 atomic regions from SNP 135664 to 136264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:18,523 DEBUG Processing 120/673 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,643 DEBUG Processing 57/702 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,679 DEBUG Processing 454/657 atomic regions from SNP 135964 to 136564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:18,717 DEBUG Processing 323/719 atomic regions from SNP 96653 to 97253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:18,748 DEBUG Processing 121/673 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,862 DEBUG Processing 58/702 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,873 DEBUG Processing 455/657 atomic regions from SNP 136264 to 136864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:18,960 DEBUG Processing 324/719 atomic regions from SNP 96953 to 97553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:18,967 DEBUG Processing 122/673 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,076 DEBUG Processing 456/657 atomic regions from SNP 136564 to 137164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:19,087 DEBUG Processing 59/702 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,182 DEBUG Processing 123/673 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,217 DEBUG Processing 325/719 atomic regions from SNP 97253 to 97853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:19,273 DEBUG Processing 457/657 atomic regions from SNP 136864 to 137464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:19,309 DEBUG Processing 60/702 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,376 DEBUG Processing 124/673 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,473 DEBUG Processing 326/719 atomic regions from SNP 97553 to 98153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:19,479 DEBUG Processing 458/657 atomic regions from SNP 137164 to 137764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:19,534 DEBUG Processing 61/702 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,572 DEBUG Processing 125/673 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,680 DEBUG Processing 459/657 atomic regions from SNP 137464 to 138064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:19,732 DEBUG Processing 327/719 atomic regions from SNP 97853 to 98453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:19,764 DEBUG Processing 62/702 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,767 DEBUG Processing 126/673 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,876 DEBUG Processing 460/657 atomic regions from SNP 137764 to 138364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:19,960 DEBUG Processing 127/673 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,987 DEBUG Processing 328/719 atomic regions from SNP 98153 to 98753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:19,994 DEBUG Processing 63/702 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,070 DEBUG Processing 461/657 atomic regions from SNP 138064 to 138664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:20,152 DEBUG Processing 128/673 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,224 DEBUG Processing 64/702 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,240 DEBUG Processing 329/719 atomic regions from SNP 98453 to 99053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:20,265 DEBUG Processing 462/657 atomic regions from SNP 138364 to 138964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:20,346 DEBUG Processing 129/673 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,453 DEBUG Processing 65/702 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,467 DEBUG Processing 463/657 atomic regions from SNP 138664 to 139264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:20,473 DEBUG Processing 330/719 atomic regions from SNP 98753 to 99353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:20,542 DEBUG Processing 130/673 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,666 DEBUG Processing 464/657 atomic regions from SNP 138964 to 139564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:20,681 DEBUG Processing 66/702 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,713 DEBUG Processing 331/719 atomic regions from SNP 99053 to 99653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:20,733 DEBUG Processing 131/673 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,866 DEBUG Processing 465/657 atomic regions from SNP 139264 to 139864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:20,910 DEBUG Processing 67/702 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,930 DEBUG Processing 132/673 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,960 DEBUG Processing 332/719 atomic regions from SNP 99353 to 99953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:21,069 DEBUG Processing 466/657 atomic regions from SNP 139564 to 140164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:21,130 DEBUG Processing 133/673 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,137 DEBUG Processing 68/702 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,187 DEBUG Processing 333/719 atomic regions from SNP 99653 to 100253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:21,271 DEBUG Processing 467/657 atomic regions from SNP 139864 to 140464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:21,328 DEBUG Processing 134/673 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,364 DEBUG Processing 69/702 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,440 DEBUG Processing 334/719 atomic regions from SNP 99953 to 100553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:21,470 DEBUG Processing 468/657 atomic regions from SNP 140164 to 140764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:21,526 DEBUG Processing 135/673 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,592 DEBUG Processing 70/702 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,671 DEBUG Processing 469/657 atomic regions from SNP 140464 to 141064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:21,688 DEBUG Processing 335/719 atomic regions from SNP 100253 to 100853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:21,724 DEBUG Processing 136/673 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,816 DEBUG Processing 71/702 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,871 DEBUG Processing 470/657 atomic regions from SNP 140764 to 141364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:21,906 DEBUG Processing 336/719 atomic regions from SNP 100553 to 101153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:21,923 DEBUG Processing 137/673 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,032 DEBUG Processing 72/702 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,071 DEBUG Processing 471/657 atomic regions from SNP 141064 to 141664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:22,118 DEBUG Processing 138/673 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,126 DEBUG Processing 337/719 atomic regions from SNP 100853 to 101453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:22,257 DEBUG Processing 73/702 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,271 DEBUG Processing 472/657 atomic regions from SNP 141364 to 141964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:22,315 DEBUG Processing 139/673 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,343 DEBUG Processing 338/719 atomic regions from SNP 101153 to 101753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:22,478 DEBUG Processing 473/657 atomic regions from SNP 141664 to 142264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:22,489 DEBUG Processing 74/702 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,520 DEBUG Processing 140/673 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,559 DEBUG Processing 339/719 atomic regions from SNP 101453 to 102053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:22,684 DEBUG Processing 474/657 atomic regions from SNP 141964 to 142564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:22,718 DEBUG Processing 75/702 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,722 DEBUG Processing 141/673 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,780 DEBUG Processing 340/719 atomic regions from SNP 101753 to 102353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:22,888 DEBUG Processing 475/657 atomic regions from SNP 142264 to 142864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:22,925 DEBUG Processing 142/673 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,937 DEBUG Processing 76/702 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,997 DEBUG Processing 341/719 atomic regions from SNP 102053 to 102653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:23,089 DEBUG Processing 476/657 atomic regions from SNP 142564 to 143164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:23,123 DEBUG Processing 143/673 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,158 DEBUG Processing 77/702 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,216 DEBUG Processing 342/719 atomic regions from SNP 102353 to 102953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:23,294 DEBUG Processing 477/657 atomic regions from SNP 142864 to 143464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:23,322 DEBUG Processing 144/673 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,382 DEBUG Processing 78/702 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,444 DEBUG Processing 343/719 atomic regions from SNP 102653 to 103253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:23,501 DEBUG Processing 478/657 atomic regions from SNP 143164 to 143764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:23,522 DEBUG Processing 145/673 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,608 DEBUG Processing 79/702 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,679 DEBUG Processing 344/719 atomic regions from SNP 102953 to 103553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:23,703 DEBUG Processing 479/657 atomic regions from SNP 143464 to 144064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:23,719 DEBUG Processing 146/673 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,827 DEBUG Processing 80/702 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,910 DEBUG Processing 480/657 atomic regions from SNP 143764 to 144364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:23,920 DEBUG Processing 147/673 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,935 DEBUG Processing 345/719 atomic regions from SNP 103253 to 103853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:24,050 DEBUG Processing 81/702 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,120 DEBUG Processing 481/657 atomic regions from SNP 144064 to 144664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:24,122 DEBUG Processing 148/673 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,169 DEBUG Processing 346/719 atomic regions from SNP 103553 to 104153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:24,275 DEBUG Processing 82/702 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,325 DEBUG Processing 149/673 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,327 DEBUG Processing 482/657 atomic regions from SNP 144364 to 144964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:24,389 DEBUG Processing 347/719 atomic regions from SNP 103853 to 104453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:24,499 DEBUG Processing 83/702 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,526 DEBUG Processing 150/673 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,534 DEBUG Processing 483/657 atomic regions from SNP 144664 to 145264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:24,624 DEBUG Processing 348/719 atomic regions from SNP 104153 to 104753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:24,713 DEBUG Processing 84/702 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,731 DEBUG Processing 151/673 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,736 DEBUG Processing 484/657 atomic regions from SNP 144964 to 145564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:24,859 DEBUG Processing 349/719 atomic regions from SNP 104453 to 105053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:24,926 DEBUG Processing 85/702 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,935 DEBUG Processing 485/657 atomic regions from SNP 145264 to 145864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:24,947 DEBUG Processing 152/673 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,091 DEBUG Processing 350/719 atomic regions from SNP 104753 to 105353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:25,136 DEBUG Processing 486/657 atomic regions from SNP 145564 to 146164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:25,144 DEBUG Processing 153/673 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,149 DEBUG Processing 86/702 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,329 DEBUG Processing 351/719 atomic regions from SNP 105053 to 105653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:25,339 DEBUG Processing 487/657 atomic regions from SNP 145864 to 146464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:25,353 DEBUG Processing 154/673 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,370 DEBUG Processing 87/702 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,540 DEBUG Processing 488/657 atomic regions from SNP 146164 to 146764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:25,549 DEBUG Processing 155/673 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,570 DEBUG Processing 352/719 atomic regions from SNP 105353 to 105953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:25,586 DEBUG Processing 88/702 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,737 DEBUG Processing 489/657 atomic regions from SNP 146464 to 147064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:25,743 DEBUG Processing 156/673 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,795 DEBUG Processing 353/719 atomic regions from SNP 105653 to 106253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:25,801 DEBUG Processing 89/702 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,934 DEBUG Processing 490/657 atomic regions from SNP 146764 to 147364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:25,936 DEBUG Processing 157/673 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,008 DEBUG Processing 90/702 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,039 DEBUG Processing 354/719 atomic regions from SNP 105953 to 106553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:26,128 DEBUG Processing 491/657 atomic regions from SNP 147064 to 147664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:26,152 DEBUG Processing 158/673 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,212 DEBUG Processing 91/702 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,266 DEBUG Processing 355/719 atomic regions from SNP 106253 to 106853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:26,326 DEBUG Processing 492/657 atomic regions from SNP 147364 to 147964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:26,344 DEBUG Processing 159/673 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,417 DEBUG Processing 92/702 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,501 DEBUG Processing 356/719 atomic regions from SNP 106553 to 107153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:26,538 DEBUG Processing 493/657 atomic regions from SNP 147664 to 148264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:26,554 DEBUG Processing 160/673 atomic regions from SNP 47859 to 48460 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,623 DEBUG Processing 93/702 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,722 DEBUG Processing 357/719 atomic regions from SNP 106853 to 107453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:26,738 DEBUG Processing 494/657 atomic regions from SNP 147964 to 148564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:26,749 DEBUG Processing 161/673 atomic regions from SNP 48160 to 48761 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,828 DEBUG Processing 94/702 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,937 DEBUG Processing 495/657 atomic regions from SNP 148264 to 148864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:26,944 DEBUG Processing 162/673 atomic regions from SNP 48461 to 49062 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,944 DEBUG Processing 358/719 atomic regions from SNP 107153 to 107753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:27,036 DEBUG Processing 95/702 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,135 DEBUG Processing 496/657 atomic regions from SNP 148564 to 149164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:27,140 DEBUG Processing 163/673 atomic regions from SNP 48762 to 49363 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,164 DEBUG Processing 359/719 atomic regions from SNP 107453 to 108053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:27,258 DEBUG Processing 96/702 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,333 DEBUG Processing 497/657 atomic regions from SNP 148864 to 149464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:27,334 DEBUG Processing 164/673 atomic regions from SNP 49063 to 49664 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,406 DEBUG Processing 360/719 atomic regions from SNP 107753 to 108353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:27,484 DEBUG Processing 97/702 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,529 DEBUG Processing 165/673 atomic regions from SNP 49364 to 49965 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,532 DEBUG Processing 498/657 atomic regions from SNP 149164 to 149764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:27,648 DEBUG Processing 361/719 atomic regions from SNP 108053 to 108653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:27,712 DEBUG Processing 98/702 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,731 DEBUG Processing 499/657 atomic regions from SNP 149464 to 150064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:27,732 DEBUG Processing 166/673 atomic regions from SNP 49665 to 50266 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,900 DEBUG Processing 362/719 atomic regions from SNP 108353 to 108953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:27,930 DEBUG Processing 500/657 atomic regions from SNP 149764 to 150364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:27,932 DEBUG Processing 167/673 atomic regions from SNP 49966 to 50567 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,947 DEBUG Processing 99/702 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,128 DEBUG Processing 168/673 atomic regions from SNP 50267 to 50868 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,130 DEBUG Processing 501/657 atomic regions from SNP 150064 to 150664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:28,149 DEBUG Processing 363/719 atomic regions from SNP 108653 to 109253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:28,172 DEBUG Processing 100/702 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,328 DEBUG Processing 502/657 atomic regions from SNP 150364 to 150964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:28,347 DEBUG Processing 169/673 atomic regions from SNP 50568 to 51169 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,392 DEBUG Processing 101/702 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,393 DEBUG Processing 364/719 atomic regions from SNP 108953 to 109553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:28,526 DEBUG Processing 503/657 atomic regions from SNP 150664 to 151264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:28,557 DEBUG Processing 170/673 atomic regions from SNP 50869 to 51470 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,604 DEBUG Processing 102/702 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,634 DEBUG Processing 365/719 atomic regions from SNP 109253 to 109853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:28,721 DEBUG Processing 504/657 atomic regions from SNP 150964 to 151564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:28,745 DEBUG Processing 171/673 atomic regions from SNP 51170 to 51771 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,810 DEBUG Processing 103/702 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,871 DEBUG Processing 366/719 atomic regions from SNP 109553 to 110153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:28,918 DEBUG Processing 505/657 atomic regions from SNP 151264 to 151864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:28,934 DEBUG Processing 172/673 atomic regions from SNP 51471 to 52072 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,017 DEBUG Processing 104/702 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,114 DEBUG Processing 367/719 atomic regions from SNP 109853 to 110453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:29,118 DEBUG Processing 506/657 atomic regions from SNP 151564 to 152164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:29,134 DEBUG Processing 173/673 atomic regions from SNP 51772 to 52373 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,231 DEBUG Processing 105/702 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,321 DEBUG Processing 507/657 atomic regions from SNP 151864 to 152464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:29,358 DEBUG Processing 174/673 atomic regions from SNP 52073 to 52674 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,358 DEBUG Processing 368/719 atomic regions from SNP 110153 to 110753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:29,442 DEBUG Processing 106/702 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,532 DEBUG Processing 508/657 atomic regions from SNP 152164 to 152764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:29,596 DEBUG Processing 175/673 atomic regions from SNP 52374 to 52975 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,604 DEBUG Processing 369/719 atomic regions from SNP 110453 to 111053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:29,656 DEBUG Processing 107/702 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,732 DEBUG Processing 509/657 atomic regions from SNP 152464 to 153064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:29,824 DEBUG Processing 176/673 atomic regions from SNP 52675 to 53276 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,847 DEBUG Processing 370/719 atomic regions from SNP 110753 to 111353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:29,875 DEBUG Processing 108/702 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,929 DEBUG Processing 510/657 atomic regions from SNP 152764 to 153364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:30,043 DEBUG Processing 177/673 atomic regions from SNP 52976 to 53577 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,085 DEBUG Processing 109/702 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,087 DEBUG Processing 371/719 atomic regions from SNP 111053 to 111653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:30,126 DEBUG Processing 511/657 atomic regions from SNP 153064 to 153664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:30,237 DEBUG Processing 178/673 atomic regions from SNP 53277 to 53878 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,293 DEBUG Processing 110/702 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,321 DEBUG Processing 512/657 atomic regions from SNP 153364 to 153964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:30,326 DEBUG Processing 372/719 atomic regions from SNP 111353 to 111953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:30,434 DEBUG Processing 179/673 atomic regions from SNP 53578 to 54179 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,517 DEBUG Processing 111/702 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,548 DEBUG Processing 513/657 atomic regions from SNP 153664 to 154264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:30,576 DEBUG Processing 373/719 atomic regions from SNP 111653 to 112253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:30,637 DEBUG Processing 180/673 atomic regions from SNP 53879 to 54480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,746 DEBUG Processing 514/657 atomic regions from SNP 153964 to 154564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:30,757 DEBUG Processing 112/702 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,808 DEBUG Processing 374/719 atomic regions from SNP 111953 to 112553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:30,830 DEBUG Processing 181/673 atomic regions from SNP 54180 to 54781 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,946 DEBUG Processing 515/657 atomic regions from SNP 154264 to 154864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:30,999 DEBUG Processing 113/702 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,025 DEBUG Processing 182/673 atomic regions from SNP 54481 to 55082 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,050 DEBUG Processing 375/719 atomic regions from SNP 112253 to 112853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:31,143 DEBUG Processing 516/657 atomic regions from SNP 154564 to 155164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:31,218 DEBUG Processing 183/673 atomic regions from SNP 54782 to 55383 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,223 DEBUG Processing 114/702 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,295 DEBUG Processing 376/719 atomic regions from SNP 112553 to 113153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:31,333 DEBUG Processing 517/657 atomic regions from SNP 154864 to 155464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:31,410 DEBUG Processing 184/673 atomic regions from SNP 55083 to 55684 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,444 DEBUG Processing 115/702 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,514 DEBUG Processing 377/719 atomic regions from SNP 112853 to 113453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:31,527 DEBUG Processing 518/657 atomic regions from SNP 155164 to 155764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:31,608 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:57:31,610 DEBUG chr12: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.010 2025-01-31 09:57:31,631 DEBUG Processing 185/673 atomic regions from SNP 55384 to 55985 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,660 DEBUG Processing 116/702 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,722 DEBUG Processing 519/657 atomic regions from SNP 155464 to 156064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:31,750 DEBUG Processing 378/719 atomic regions from SNP 113153 to 113753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:31,843 DEBUG Processing 186/673 atomic regions from SNP 55685 to 56286 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,870 DEBUG Processing 117/702 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,915 DEBUG Processing 520/657 atomic regions from SNP 155764 to 156364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:31,978 DEBUG Processing 379/719 atomic regions from SNP 113453 to 114053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:32,061 DEBUG Processing 187/673 atomic regions from SNP 55986 to 56587 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,085 DEBUG Processing 118/702 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,109 DEBUG Processing 521/657 atomic regions from SNP 156064 to 156664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:32,200 DEBUG Processing 380/719 atomic regions from SNP 113753 to 114353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:32,265 DEBUG Processing 188/673 atomic regions from SNP 56287 to 56888 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,294 DEBUG Processing 119/702 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,304 DEBUG Processing 522/657 atomic regions from SNP 156364 to 156964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:32,432 DEBUG Processing 381/719 atomic regions from SNP 114053 to 114653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:32,457 DEBUG Processing 189/673 atomic regions from SNP 56588 to 57189 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,502 DEBUG Processing 523/657 atomic regions from SNP 156664 to 157264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:32,502 DEBUG Processing 120/702 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,639 DEBUG Processing 382/719 atomic regions from SNP 114353 to 114953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:32,651 DEBUG Processing 190/673 atomic regions from SNP 56889 to 57490 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,700 DEBUG Processing 524/657 atomic regions from SNP 156964 to 157564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:32,713 DEBUG Processing 121/702 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,843 DEBUG Processing 191/673 atomic regions from SNP 57190 to 57791 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,847 DEBUG Processing 383/719 atomic regions from SNP 114653 to 115253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:32,898 DEBUG Processing 525/657 atomic regions from SNP 157264 to 157864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:32,928 DEBUG Processing 122/702 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,035 DEBUG Processing 192/673 atomic regions from SNP 57491 to 58092 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,062 DEBUG Processing 384/719 atomic regions from SNP 114953 to 115553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:33,095 DEBUG Processing 526/657 atomic regions from SNP 157564 to 158164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:33,138 DEBUG Processing 123/702 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,225 DEBUG Processing 193/673 atomic regions from SNP 57792 to 58393 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,274 DEBUG Processing 385/719 atomic regions from SNP 115253 to 115853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:33,289 DEBUG Processing 527/657 atomic regions from SNP 157864 to 158464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:33,343 DEBUG Processing 124/702 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,415 DEBUG Processing 194/673 atomic regions from SNP 58093 to 58694 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,486 DEBUG Processing 528/657 atomic regions from SNP 158164 to 158764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:33,504 DEBUG Processing 386/719 atomic regions from SNP 115553 to 116153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:33,553 DEBUG Processing 125/702 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,606 DEBUG Processing 195/673 atomic regions from SNP 58394 to 58995 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,686 DEBUG Processing 529/657 atomic regions from SNP 158464 to 159064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:33,713 DEBUG chr12 total SNP count: 197169 2025-01-31 09:57:33,714 DEBUG chr12 length: 120129022 2025-01-31 09:57:33,714 DEBUG ----------------------------------------- 2025-01-31 09:57:33,714 INFO Processing SNPs in chr12 2025-01-31 09:57:33,715 DEBUG Processing 387/719 atomic regions from SNP 115853 to 116453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:33,768 DEBUG Processing 126/702 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,798 DEBUG Processing 196/673 atomic regions from SNP 58695 to 59296 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,881 DEBUG Processing 530/657 atomic regions from SNP 158764 to 159364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:33,909 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 197169)] 2025-01-31 09:57:33,923 DEBUG Processing 388/719 atomic regions from SNP 116153 to 116753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:33,978 DEBUG Processing 127/702 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,007 DEBUG Processing 197/673 atomic regions from SNP 58996 to 59597 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,045 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:34,076 DEBUG Processing 531/657 atomic regions from SNP 159064 to 159664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:34,132 DEBUG Processing 389/719 atomic regions from SNP 116453 to 117053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:34,189 DEBUG Processing 128/702 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,236 DEBUG Processing 198/673 atomic regions from SNP 59297 to 59898 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,269 DEBUG Processing 532/657 atomic regions from SNP 159364 to 159964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:34,337 DEBUG Processing 390/719 atomic regions from SNP 116753 to 117353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:34,402 DEBUG Processing 129/702 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,458 DEBUG Processing 199/673 atomic regions from SNP 59598 to 60199 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,464 DEBUG Processing 533/657 atomic regions from SNP 159664 to 160264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:34,557 DEBUG Processing 391/719 atomic regions from SNP 117053 to 117653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:34,624 DEBUG Processing 130/702 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,651 DEBUG Processing 200/673 atomic regions from SNP 59899 to 60500 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,658 DEBUG Processing 534/657 atomic regions from SNP 159964 to 160564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:34,770 DEBUG Processing 392/719 atomic regions from SNP 117353 to 117953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:34,835 DEBUG Processing 131/702 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,844 DEBUG Processing 201/673 atomic regions from SNP 60200 to 60801 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,854 DEBUG Processing 535/657 atomic regions from SNP 160264 to 160864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:34,985 DEBUG Processing 393/719 atomic regions from SNP 117653 to 118253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:35,043 DEBUG Processing 132/702 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,056 DEBUG Processing 202/673 atomic regions from SNP 60501 to 61102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,059 DEBUG Processing 536/657 atomic regions from SNP 160564 to 161164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:35,197 DEBUG Processing 394/719 atomic regions from SNP 117953 to 118553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:35,255 DEBUG Processing 133/702 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,272 DEBUG Processing 537/657 atomic regions from SNP 160864 to 161464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:35,276 DEBUG Processing 203/673 atomic regions from SNP 60802 to 61403 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,418 DEBUG Processing 395/719 atomic regions from SNP 118253 to 118853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:35,469 DEBUG Processing 538/657 atomic regions from SNP 161164 to 161764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:35,470 DEBUG Processing 204/673 atomic regions from SNP 61103 to 61704 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,472 DEBUG Processing 134/702 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,633 DEBUG Processing 396/719 atomic regions from SNP 118553 to 119153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:35,659 DEBUG Processing 205/673 atomic regions from SNP 61404 to 62005 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,664 DEBUG Processing 539/657 atomic regions from SNP 161464 to 162064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:35,687 DEBUG Processing 135/702 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,842 DEBUG Processing 397/719 atomic regions from SNP 118853 to 119453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:35,852 DEBUG Processing 206/673 atomic regions from SNP 61705 to 62306 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,861 DEBUG Processing 540/657 atomic regions from SNP 161764 to 162364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:35,905 DEBUG Processing 136/702 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,045 DEBUG Processing 207/673 atomic regions from SNP 62006 to 62607 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,060 DEBUG Processing 398/719 atomic regions from SNP 119153 to 119753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:36,064 DEBUG Processing 541/657 atomic regions from SNP 162064 to 162664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:36,120 DEBUG Processing 137/702 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,240 DEBUG Processing 208/673 atomic regions from SNP 62307 to 62908 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,264 DEBUG Processing 542/657 atomic regions from SNP 162364 to 162964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:36,275 DEBUG Processing 399/719 atomic regions from SNP 119453 to 120053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:36,332 DEBUG Processing 138/702 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,438 DEBUG Processing 209/673 atomic regions from SNP 62608 to 63209 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,463 DEBUG Processing 543/657 atomic regions from SNP 162664 to 163264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:36,483 DEBUG Processing 400/719 atomic regions from SNP 119753 to 120353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:36,539 DEBUG Processing 139/702 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,631 DEBUG Processing 210/673 atomic regions from SNP 62909 to 63510 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,662 DEBUG Processing 544/657 atomic regions from SNP 162964 to 163564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:36,691 DEBUG Processing 401/719 atomic regions from SNP 120053 to 120653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:36,750 DEBUG Processing 140/702 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,831 DEBUG Processing 211/673 atomic regions from SNP 63210 to 63811 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,864 DEBUG Processing 545/657 atomic regions from SNP 163264 to 163864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:36,909 DEBUG Processing 402/719 atomic regions from SNP 120353 to 120953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:36,962 DEBUG Processing 141/702 atomic regions from SNP 42140 to 42740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,035 DEBUG Processing 212/673 atomic regions from SNP 63511 to 64112 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,071 DEBUG Processing 546/657 atomic regions from SNP 163564 to 164164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:37,137 DEBUG Processing 403/719 atomic regions from SNP 120653 to 121253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:37,178 DEBUG Processing 142/702 atomic regions from SNP 42440 to 43040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,234 DEBUG Processing 213/673 atomic regions from SNP 63812 to 64413 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,277 DEBUG Processing 547/657 atomic regions from SNP 163864 to 164464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:37,378 DEBUG Processing 404/719 atomic regions from SNP 120953 to 121553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:37,390 DEBUG Processing 143/702 atomic regions from SNP 42740 to 43340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,425 DEBUG Processing 214/673 atomic regions from SNP 64113 to 64714 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,473 DEBUG Processing 548/657 atomic regions from SNP 164164 to 164764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:37,601 DEBUG Processing 144/702 atomic regions from SNP 43040 to 43640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,611 DEBUG Processing 405/719 atomic regions from SNP 121253 to 121853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:37,617 DEBUG Processing 215/673 atomic regions from SNP 64414 to 65015 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,673 DEBUG Processing 549/657 atomic regions from SNP 164464 to 165064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:37,807 DEBUG Processing 145/702 atomic regions from SNP 43340 to 43940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,815 DEBUG Processing 216/673 atomic regions from SNP 64715 to 65316 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,835 DEBUG Processing 406/719 atomic regions from SNP 121553 to 122153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:37,874 DEBUG Processing 550/657 atomic regions from SNP 164764 to 165364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:38,017 DEBUG Processing 146/702 atomic regions from SNP 43640 to 44240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,032 DEBUG Processing 217/673 atomic regions from SNP 65016 to 65617 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,054 DEBUG Processing 407/719 atomic regions from SNP 121853 to 122453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:38,068 DEBUG Processing 551/657 atomic regions from SNP 165064 to 165664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:38,222 DEBUG Processing 147/702 atomic regions from SNP 43940 to 44540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,249 DEBUG Processing 218/673 atomic regions from SNP 65317 to 65918 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,264 DEBUG Processing 408/719 atomic regions from SNP 122153 to 122753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:38,266 DEBUG Processing 552/657 atomic regions from SNP 165364 to 165964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:38,429 DEBUG Processing 148/702 atomic regions from SNP 44240 to 44840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,464 DEBUG Processing 553/657 atomic regions from SNP 165664 to 166264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:38,465 DEBUG Processing 219/673 atomic regions from SNP 65618 to 66219 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,495 DEBUG Processing 409/719 atomic regions from SNP 122453 to 123053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:38,639 DEBUG Processing 149/702 atomic regions from SNP 44540 to 45140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,667 DEBUG Processing 554/657 atomic regions from SNP 165964 to 166564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:38,669 DEBUG Processing 220/673 atomic regions from SNP 65919 to 66520 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,721 DEBUG Processing 410/719 atomic regions from SNP 122753 to 123353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:38,854 DEBUG Processing 150/702 atomic regions from SNP 44840 to 45440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,863 DEBUG Processing 221/673 atomic regions from SNP 66220 to 66821 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,865 DEBUG Processing 555/657 atomic regions from SNP 166264 to 166864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:38,928 DEBUG Processing 411/719 atomic regions from SNP 123053 to 123653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:39,053 DEBUG Processing 222/673 atomic regions from SNP 66521 to 67122 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,057 DEBUG Processing 151/702 atomic regions from SNP 45140 to 45740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,062 DEBUG Processing 556/657 atomic regions from SNP 166564 to 167164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:39,137 DEBUG Processing 412/719 atomic regions from SNP 123353 to 123953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:39,253 DEBUG Processing 223/673 atomic regions from SNP 66822 to 67423 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,256 DEBUG Processing 152/702 atomic regions from SNP 45440 to 46040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,258 DEBUG Processing 557/657 atomic regions from SNP 166864 to 167464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:39,346 DEBUG Processing 413/719 atomic regions from SNP 123653 to 124253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:39,460 DEBUG Processing 558/657 atomic regions from SNP 167164 to 167764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:39,462 DEBUG Processing 224/673 atomic regions from SNP 67123 to 67724 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,463 DEBUG Processing 153/702 atomic regions from SNP 45740 to 46340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,580 DEBUG Processing 414/719 atomic regions from SNP 123953 to 124553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:39,657 DEBUG Processing 225/673 atomic regions from SNP 67424 to 68025 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,659 DEBUG Processing 559/657 atomic regions from SNP 167464 to 168064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:39,668 DEBUG Processing 154/702 atomic regions from SNP 46040 to 46640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,811 DEBUG Processing 415/719 atomic regions from SNP 124253 to 124853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:39,850 DEBUG Processing 226/673 atomic regions from SNP 67725 to 68326 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,857 DEBUG Processing 560/657 atomic regions from SNP 167764 to 168364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:39,875 DEBUG Processing 155/702 atomic regions from SNP 46340 to 46940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,042 DEBUG Processing 227/673 atomic regions from SNP 68026 to 68627 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,048 DEBUG Processing 416/719 atomic regions from SNP 124553 to 125153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:40,055 DEBUG Processing 561/657 atomic regions from SNP 168064 to 168664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:40,078 DEBUG Processing 156/702 atomic regions from SNP 46640 to 47240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,237 DEBUG Processing 228/673 atomic regions from SNP 68327 to 68928 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,254 DEBUG Processing 562/657 atomic regions from SNP 168364 to 168964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:40,264 DEBUG Processing 417/719 atomic regions from SNP 124853 to 125453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:40,284 DEBUG Processing 157/702 atomic regions from SNP 46940 to 47540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,438 DEBUG Processing 229/673 atomic regions from SNP 68628 to 69229 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,456 DEBUG Processing 563/657 atomic regions from SNP 168664 to 169264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:40,483 DEBUG Processing 418/719 atomic regions from SNP 125153 to 125753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:40,489 DEBUG Processing 158/702 atomic regions from SNP 47240 to 47840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,656 DEBUG Processing 564/657 atomic regions from SNP 168964 to 169564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:40,657 DEBUG Processing 230/673 atomic regions from SNP 68929 to 69530 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,692 DEBUG Processing 419/719 atomic regions from SNP 125453 to 126053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:40,693 DEBUG Processing 159/702 atomic regions from SNP 47540 to 48140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,853 DEBUG Processing 565/657 atomic regions from SNP 169264 to 169864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:40,880 DEBUG Processing 231/673 atomic regions from SNP 69230 to 69831 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,899 DEBUG Processing 160/702 atomic regions from SNP 47840 to 48440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,899 DEBUG Processing 420/719 atomic regions from SNP 125753 to 126353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:41,050 DEBUG Processing 566/657 atomic regions from SNP 169564 to 170164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:41,096 DEBUG Processing 232/673 atomic regions from SNP 69531 to 70132 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,111 DEBUG Processing 421/719 atomic regions from SNP 126053 to 126653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:41,115 DEBUG Processing 161/702 atomic regions from SNP 48140 to 48740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,250 DEBUG Processing 567/657 atomic regions from SNP 169864 to 170464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:41,330 DEBUG Processing 422/719 atomic regions from SNP 126353 to 126953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:41,335 DEBUG Processing 233/673 atomic regions from SNP 69832 to 70433 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,352 DEBUG Processing 162/702 atomic regions from SNP 48440 to 49040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,450 DEBUG Processing 568/657 atomic regions from SNP 170164 to 170764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:41,537 DEBUG Processing 234/673 atomic regions from SNP 70133 to 70734 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,547 DEBUG Processing 423/719 atomic regions from SNP 126653 to 127253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:41,578 DEBUG Processing 163/702 atomic regions from SNP 48740 to 49340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,648 DEBUG Processing 569/657 atomic regions from SNP 170464 to 171064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:41,737 DEBUG Processing 235/673 atomic regions from SNP 70434 to 71035 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,766 DEBUG Processing 424/719 atomic regions from SNP 126953 to 127553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:41,805 DEBUG Processing 164/702 atomic regions from SNP 49040 to 49640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,847 DEBUG Processing 570/657 atomic regions from SNP 170764 to 171364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:41,936 DEBUG Processing 236/673 atomic regions from SNP 70735 to 71336 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,977 DEBUG Processing 425/719 atomic regions from SNP 127253 to 127853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:42,046 DEBUG Processing 571/657 atomic regions from SNP 171064 to 171664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:42,048 DEBUG Processing 165/702 atomic regions from SNP 49340 to 49940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,135 DEBUG Processing 237/673 atomic regions from SNP 71036 to 71637 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,189 DEBUG Processing 426/719 atomic regions from SNP 127553 to 128153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:42,248 DEBUG Processing 572/657 atomic regions from SNP 171364 to 171964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:42,265 DEBUG Processing 166/702 atomic regions from SNP 49640 to 50240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,328 DEBUG Processing 238/673 atomic regions from SNP 71337 to 71938 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,401 DEBUG Processing 427/719 atomic regions from SNP 127853 to 128453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:42,442 DEBUG Processing 573/657 atomic regions from SNP 171664 to 172264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:42,474 DEBUG Processing 167/702 atomic regions from SNP 49940 to 50540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,537 DEBUG Processing 239/673 atomic regions from SNP 71638 to 72239 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,606 DEBUG Processing 428/719 atomic regions from SNP 128153 to 128753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:42,638 DEBUG Processing 574/657 atomic regions from SNP 171964 to 172564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:42,677 DEBUG Processing 168/702 atomic regions from SNP 50240 to 50840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,760 DEBUG Processing 240/673 atomic regions from SNP 71939 to 72540 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,816 DEBUG Processing 429/719 atomic regions from SNP 128453 to 129053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:42,832 DEBUG Processing 575/657 atomic regions from SNP 172264 to 172864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:42,883 DEBUG Processing 169/702 atomic regions from SNP 50540 to 51140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,961 DEBUG Processing 241/673 atomic regions from SNP 72240 to 72841 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,019 DEBUG Processing 430/719 atomic regions from SNP 128753 to 129353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:43,026 DEBUG Processing 576/657 atomic regions from SNP 172564 to 173164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:43,085 DEBUG Processing 170/702 atomic regions from SNP 50840 to 51440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,171 DEBUG Processing 242/673 atomic regions from SNP 72541 to 73142 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,223 DEBUG Processing 577/657 atomic regions from SNP 172864 to 173464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:43,238 DEBUG Processing 431/719 atomic regions from SNP 129053 to 129653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:43,290 DEBUG Processing 171/702 atomic regions from SNP 51140 to 51740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,364 DEBUG Processing 243/673 atomic regions from SNP 72842 to 73443 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,424 DEBUG Processing 578/657 atomic regions from SNP 173164 to 173764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:43,480 DEBUG Processing 432/719 atomic regions from SNP 129353 to 129953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:43,499 DEBUG Processing 172/702 atomic regions from SNP 51440 to 52040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,556 DEBUG Processing 244/673 atomic regions from SNP 73143 to 73744 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,620 DEBUG Processing 579/657 atomic regions from SNP 173464 to 174064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:43,704 DEBUG Processing 173/702 atomic regions from SNP 51740 to 52340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,717 DEBUG Processing 433/719 atomic regions from SNP 129653 to 130253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:43,759 DEBUG Processing 245/673 atomic regions from SNP 73444 to 74045 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,819 DEBUG Processing 580/657 atomic regions from SNP 173764 to 174364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:43,914 DEBUG Processing 174/702 atomic regions from SNP 52040 to 52640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,936 DEBUG Processing 434/719 atomic regions from SNP 129953 to 130553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:43,957 DEBUG Processing 246/673 atomic regions from SNP 73745 to 74346 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,019 DEBUG Processing 581/657 atomic regions from SNP 174064 to 174664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:44,119 DEBUG Processing 175/702 atomic regions from SNP 52340 to 52940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,145 DEBUG Processing 435/719 atomic regions from SNP 130253 to 130853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:44,173 DEBUG Processing 247/673 atomic regions from SNP 74046 to 74647 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,222 DEBUG Processing 582/657 atomic regions from SNP 174364 to 174964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:44,330 DEBUG Processing 176/702 atomic regions from SNP 52640 to 53240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,360 DEBUG Processing 436/719 atomic regions from SNP 130553 to 131153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:44,407 DEBUG Processing 248/673 atomic regions from SNP 74347 to 74948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,429 DEBUG Processing 583/657 atomic regions from SNP 174664 to 175264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:44,542 DEBUG Processing 177/702 atomic regions from SNP 52940 to 53540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,574 DEBUG Processing 437/719 atomic regions from SNP 130853 to 131453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:44,606 DEBUG Processing 249/673 atomic regions from SNP 74648 to 75249 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,636 DEBUG Processing 584/657 atomic regions from SNP 174964 to 175564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:44,756 DEBUG Processing 178/702 atomic regions from SNP 53240 to 53840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,793 DEBUG Processing 438/719 atomic regions from SNP 131153 to 131753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:44,806 DEBUG Processing 250/673 atomic regions from SNP 74949 to 75550 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,846 DEBUG Processing 585/657 atomic regions from SNP 175264 to 175864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:44,966 DEBUG Processing 179/702 atomic regions from SNP 53540 to 54140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,006 DEBUG Processing 251/673 atomic regions from SNP 75250 to 75851 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,010 DEBUG Processing 439/719 atomic regions from SNP 131453 to 132053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:45,055 DEBUG Processing 586/657 atomic regions from SNP 175564 to 176164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:45,179 DEBUG Processing 180/702 atomic regions from SNP 53840 to 54440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,223 DEBUG Processing 252/673 atomic regions from SNP 75551 to 76152 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,229 DEBUG Processing 440/719 atomic regions from SNP 131753 to 132353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:45,261 DEBUG Processing 587/657 atomic regions from SNP 175864 to 176464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:45,394 DEBUG Processing 181/702 atomic regions from SNP 54140 to 54740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,443 DEBUG Processing 441/719 atomic regions from SNP 132053 to 132653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:45,448 DEBUG Processing 253/673 atomic regions from SNP 75852 to 76453 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,469 DEBUG Processing 588/657 atomic regions from SNP 176164 to 176764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:45,608 DEBUG Processing 182/702 atomic regions from SNP 54440 to 55040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,655 DEBUG Processing 442/719 atomic regions from SNP 132353 to 132953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:45,655 DEBUG Processing 254/673 atomic regions from SNP 76153 to 76754 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,674 DEBUG Processing 589/657 atomic regions from SNP 176464 to 177064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:45,817 DEBUG Processing 183/702 atomic regions from SNP 54740 to 55340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,870 DEBUG Processing 443/719 atomic regions from SNP 132653 to 133253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:45,879 DEBUG Processing 590/657 atomic regions from SNP 176764 to 177364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:45,886 DEBUG Processing 255/673 atomic regions from SNP 76454 to 77055 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,024 DEBUG Processing 184/702 atomic regions from SNP 55040 to 55640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,085 DEBUG Processing 591/657 atomic regions from SNP 177064 to 177664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:46,085 DEBUG Processing 444/719 atomic regions from SNP 132953 to 133553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:46,100 DEBUG Processing 256/673 atomic regions from SNP 76755 to 77356 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,238 DEBUG Processing 185/702 atomic regions from SNP 55340 to 55940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,296 DEBUG Processing 592/657 atomic regions from SNP 177364 to 177964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:46,305 DEBUG Processing 257/673 atomic regions from SNP 77056 to 77657 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,306 DEBUG Processing 445/719 atomic regions from SNP 133253 to 133853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:46,449 DEBUG Processing 186/702 atomic regions from SNP 55640 to 56240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,503 DEBUG Processing 593/657 atomic regions from SNP 177664 to 178264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:46,505 DEBUG Processing 258/673 atomic regions from SNP 77357 to 77958 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,550 DEBUG Processing 446/719 atomic regions from SNP 133553 to 134153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:46,674 DEBUG Processing 187/702 atomic regions from SNP 55940 to 56540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,709 DEBUG Processing 259/673 atomic regions from SNP 77658 to 78259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,711 DEBUG Processing 594/657 atomic regions from SNP 177964 to 178564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:46,799 DEBUG Processing 447/719 atomic regions from SNP 133853 to 134453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:46,891 DEBUG Processing 188/702 atomic regions from SNP 56240 to 56840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,909 DEBUG Processing 260/673 atomic regions from SNP 77959 to 78560 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,919 DEBUG Processing 595/657 atomic regions from SNP 178264 to 178864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:47,037 DEBUG Processing 448/719 atomic regions from SNP 134153 to 134753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:47,111 DEBUG Processing 189/702 atomic regions from SNP 56540 to 57140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,114 DEBUG Processing 261/673 atomic regions from SNP 78260 to 78861 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,128 DEBUG Processing 596/657 atomic regions from SNP 178564 to 179164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:47,269 DEBUG Processing 449/719 atomic regions from SNP 134453 to 135053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:47,318 DEBUG Processing 262/673 atomic regions from SNP 78561 to 79162 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,327 DEBUG Processing 190/702 atomic regions from SNP 56840 to 57440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,338 DEBUG Processing 597/657 atomic regions from SNP 178864 to 179464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:47,512 DEBUG Processing 450/719 atomic regions from SNP 134753 to 135353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:47,523 DEBUG Processing 263/673 atomic regions from SNP 78862 to 79463 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,545 DEBUG Processing 191/702 atomic regions from SNP 57140 to 57740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,548 DEBUG Processing 598/657 atomic regions from SNP 179164 to 179764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:47,745 DEBUG Processing 451/719 atomic regions from SNP 135053 to 135653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:47,750 DEBUG Processing 264/673 atomic regions from SNP 79163 to 79764 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,751 DEBUG Processing 599/657 atomic regions from SNP 179464 to 180064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:47,767 DEBUG Processing 192/702 atomic regions from SNP 57440 to 58040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,962 DEBUG Processing 600/657 atomic regions from SNP 179764 to 180364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:47,972 DEBUG Processing 452/719 atomic regions from SNP 135353 to 135953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:47,976 DEBUG Processing 265/673 atomic regions from SNP 79464 to 80065 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,996 DEBUG Processing 193/702 atomic regions from SNP 57740 to 58340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,172 DEBUG Processing 601/657 atomic regions from SNP 180064 to 180664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:48,191 DEBUG Processing 453/719 atomic regions from SNP 135653 to 136253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:48,212 DEBUG Processing 266/673 atomic regions from SNP 79765 to 80366 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,216 DEBUG Processing 194/702 atomic regions from SNP 58040 to 58640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,404 DEBUG Processing 602/657 atomic regions from SNP 180364 to 180964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:48,410 DEBUG Processing 454/719 atomic regions from SNP 135953 to 136553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:48,435 DEBUG Processing 195/702 atomic regions from SNP 58340 to 58940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,453 DEBUG Processing 267/673 atomic regions from SNP 80066 to 80667 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,612 DEBUG Processing 603/657 atomic regions from SNP 180664 to 181264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:48,629 DEBUG Processing 455/719 atomic regions from SNP 136253 to 136853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:48,652 DEBUG Processing 196/702 atomic regions from SNP 58640 to 59240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,689 DEBUG Processing 268/673 atomic regions from SNP 80367 to 80968 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,818 DEBUG Processing 604/657 atomic regions from SNP 180964 to 181564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:48,848 DEBUG Processing 456/719 atomic regions from SNP 136553 to 137153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:48,869 DEBUG Processing 197/702 atomic regions from SNP 58940 to 59540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,925 DEBUG Processing 269/673 atomic regions from SNP 80668 to 81269 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,018 DEBUG Processing 605/657 atomic regions from SNP 181264 to 181864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:49,065 DEBUG Processing 457/719 atomic regions from SNP 136853 to 137453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:49,090 DEBUG Processing 198/702 atomic regions from SNP 59240 to 59840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,153 DEBUG Processing 270/673 atomic regions from SNP 80969 to 81570 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,227 DEBUG Processing 606/657 atomic regions from SNP 181564 to 182164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:49,285 DEBUG Processing 458/719 atomic regions from SNP 137153 to 137753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:49,315 DEBUG Processing 199/702 atomic regions from SNP 59540 to 60140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,367 DEBUG Processing 271/673 atomic regions from SNP 81270 to 81871 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,432 DEBUG Processing 607/657 atomic regions from SNP 181864 to 182464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:49,502 DEBUG Processing 459/719 atomic regions from SNP 137453 to 138053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:49,538 DEBUG Processing 200/702 atomic regions from SNP 59840 to 60440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,574 DEBUG Processing 272/673 atomic regions from SNP 81571 to 82172 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,638 DEBUG Processing 608/657 atomic regions from SNP 182164 to 182764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:49,721 DEBUG Processing 460/719 atomic regions from SNP 137753 to 138353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:49,759 DEBUG Processing 201/702 atomic regions from SNP 60140 to 60740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,777 DEBUG Processing 273/673 atomic regions from SNP 81872 to 82473 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,843 DEBUG Processing 609/657 atomic regions from SNP 182464 to 183064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:49,938 DEBUG Processing 461/719 atomic regions from SNP 138053 to 138653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:49,975 DEBUG Processing 274/673 atomic regions from SNP 82173 to 82774 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,985 DEBUG Processing 202/702 atomic regions from SNP 60440 to 61040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,044 DEBUG Processing 610/657 atomic regions from SNP 182764 to 183364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:50,158 DEBUG Processing 462/719 atomic regions from SNP 138353 to 138953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:50,178 DEBUG Processing 275/673 atomic regions from SNP 82474 to 83075 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,205 DEBUG Processing 203/702 atomic regions from SNP 60740 to 61340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,250 DEBUG Processing 611/657 atomic regions from SNP 183064 to 183664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:50,370 DEBUG Processing 463/719 atomic regions from SNP 138653 to 139253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:50,382 DEBUG Processing 276/673 atomic regions from SNP 82775 to 83376 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,419 DEBUG Processing 204/702 atomic regions from SNP 61040 to 61640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,456 DEBUG Processing 612/657 atomic regions from SNP 183364 to 183964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:50,583 DEBUG Processing 464/719 atomic regions from SNP 138953 to 139553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:50,605 DEBUG Processing 277/673 atomic regions from SNP 83076 to 83677 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,638 DEBUG Processing 205/702 atomic regions from SNP 61340 to 61940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,664 DEBUG Processing 613/657 atomic regions from SNP 183664 to 184264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:50,808 DEBUG Processing 465/719 atomic regions from SNP 139253 to 139853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:50,819 DEBUG Processing 278/673 atomic regions from SNP 83377 to 83978 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,860 DEBUG Processing 206/702 atomic regions from SNP 61640 to 62240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,875 DEBUG Processing 614/657 atomic regions from SNP 183964 to 184564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:51,027 DEBUG Processing 279/673 atomic regions from SNP 83678 to 84279 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,027 DEBUG Processing 466/719 atomic regions from SNP 139553 to 140153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:51,084 DEBUG Processing 207/702 atomic regions from SNP 61940 to 62540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,086 DEBUG Processing 615/657 atomic regions from SNP 184264 to 184864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:51,245 DEBUG Processing 280/673 atomic regions from SNP 83979 to 84580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,245 DEBUG Processing 467/719 atomic regions from SNP 139853 to 140453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:51,288 DEBUG Processing 616/657 atomic regions from SNP 184564 to 185164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:51,304 DEBUG Processing 208/702 atomic regions from SNP 62240 to 62840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,459 DEBUG Processing 468/719 atomic regions from SNP 140153 to 140753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:51,469 DEBUG Processing 281/673 atomic regions from SNP 84280 to 84880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,491 DEBUG Processing 617/657 atomic regions from SNP 184864 to 185464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:51,523 DEBUG Processing 209/702 atomic regions from SNP 62540 to 63140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,673 DEBUG Processing 469/719 atomic regions from SNP 140453 to 141053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:51,697 DEBUG Processing 618/657 atomic regions from SNP 185164 to 185764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:51,698 DEBUG Processing 282/673 atomic regions from SNP 84580 to 85180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,744 DEBUG Processing 210/702 atomic regions from SNP 62840 to 63440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,890 DEBUG Processing 470/719 atomic regions from SNP 140753 to 141353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:51,900 DEBUG Processing 283/673 atomic regions from SNP 84880 to 85480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,905 DEBUG Processing 619/657 atomic regions from SNP 185464 to 186064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:51,966 DEBUG Processing 211/702 atomic regions from SNP 63140 to 63740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,100 DEBUG Processing 284/673 atomic regions from SNP 85180 to 85780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,108 DEBUG Processing 471/719 atomic regions from SNP 141053 to 141653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:52,112 DEBUG Processing 620/657 atomic regions from SNP 185764 to 186364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:52,186 DEBUG Processing 212/702 atomic regions from SNP 63440 to 64040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,305 DEBUG Processing 285/673 atomic regions from SNP 85480 to 86080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,325 DEBUG Processing 472/719 atomic regions from SNP 141353 to 141953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:52,325 DEBUG Processing 621/657 atomic regions from SNP 186064 to 186664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:52,396 DEBUG Processing 213/702 atomic regions from SNP 63740 to 64340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,511 DEBUG Processing 286/673 atomic regions from SNP 85780 to 86380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,531 DEBUG Processing 622/657 atomic regions from SNP 186364 to 186964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:52,541 DEBUG Processing 473/719 atomic regions from SNP 141653 to 142253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:52,605 DEBUG Processing 214/702 atomic regions from SNP 64040 to 64640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,714 DEBUG Processing 287/673 atomic regions from SNP 86080 to 86680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,736 DEBUG Processing 623/657 atomic regions from SNP 186664 to 187264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:52,753 DEBUG Processing 474/719 atomic regions from SNP 141953 to 142553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:52,813 DEBUG Processing 215/702 atomic regions from SNP 64340 to 64940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,919 DEBUG Processing 288/673 atomic regions from SNP 86380 to 86980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,942 DEBUG Processing 624/657 atomic regions from SNP 186964 to 187564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:52,965 DEBUG Processing 475/719 atomic regions from SNP 142253 to 142853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:53,031 DEBUG Processing 216/702 atomic regions from SNP 64640 to 65240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,124 DEBUG Processing 289/673 atomic regions from SNP 86680 to 87280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,162 DEBUG Processing 625/657 atomic regions from SNP 187264 to 187864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:53,183 DEBUG Processing 476/719 atomic regions from SNP 142553 to 143153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:53,250 DEBUG Processing 217/702 atomic regions from SNP 64940 to 65540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,327 DEBUG Processing 290/673 atomic regions from SNP 86980 to 87580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,367 DEBUG Processing 626/657 atomic regions from SNP 187564 to 188164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:53,396 DEBUG Processing 477/719 atomic regions from SNP 142853 to 143453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:53,469 DEBUG Processing 218/702 atomic regions from SNP 65240 to 65840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,530 DEBUG Processing 291/673 atomic regions from SNP 87280 to 87880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,578 DEBUG Processing 627/657 atomic regions from SNP 187864 to 188464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:53,607 DEBUG Processing 478/719 atomic regions from SNP 143153 to 143753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:53,687 DEBUG Processing 219/702 atomic regions from SNP 65540 to 66140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,739 DEBUG Processing 292/673 atomic regions from SNP 87580 to 88180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,794 DEBUG Processing 628/657 atomic regions from SNP 188164 to 188764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:53,822 DEBUG Processing 479/719 atomic regions from SNP 143453 to 144053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:53,914 DEBUG Processing 220/702 atomic regions from SNP 65840 to 66440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,942 DEBUG Processing 293/673 atomic regions from SNP 87880 to 88480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,000 DEBUG Processing 629/657 atomic regions from SNP 188464 to 189064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:54,033 DEBUG Processing 480/719 atomic regions from SNP 143753 to 144353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:54,134 DEBUG Processing 221/702 atomic regions from SNP 66140 to 66740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,145 DEBUG Processing 294/673 atomic regions from SNP 88180 to 88780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,207 DEBUG Processing 630/657 atomic regions from SNP 188764 to 189364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:54,244 DEBUG Processing 481/719 atomic regions from SNP 144053 to 144653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:54,351 DEBUG Processing 222/702 atomic regions from SNP 66440 to 67040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,351 DEBUG Processing 295/673 atomic regions from SNP 88480 to 89080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,415 DEBUG Processing 631/657 atomic regions from SNP 189064 to 189664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:54,458 DEBUG Processing 482/719 atomic regions from SNP 144353 to 144953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:54,564 DEBUG Processing 296/673 atomic regions from SNP 88780 to 89380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,571 DEBUG Processing 223/702 atomic regions from SNP 66740 to 67340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,628 DEBUG Processing 632/657 atomic regions from SNP 189364 to 189964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:54,679 DEBUG Processing 483/719 atomic regions from SNP 144653 to 145253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:54,784 DEBUG Processing 224/702 atomic regions from SNP 67040 to 67640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,790 DEBUG Processing 297/673 atomic regions from SNP 89080 to 89680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,862 DEBUG Processing 633/657 atomic regions from SNP 189664 to 190264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:54,895 DEBUG Processing 484/719 atomic regions from SNP 144953 to 145553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:55,003 DEBUG Processing 225/702 atomic regions from SNP 67340 to 67940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,020 DEBUG Processing 298/673 atomic regions from SNP 89380 to 89980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,074 DEBUG Processing 634/657 atomic regions from SNP 189964 to 190564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:55,117 DEBUG Processing 485/719 atomic regions from SNP 145253 to 145853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:55,218 DEBUG Processing 226/702 atomic regions from SNP 67640 to 68240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,269 DEBUG Processing 299/673 atomic regions from SNP 89680 to 90280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,289 DEBUG Processing 635/657 atomic regions from SNP 190264 to 190864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:55,335 DEBUG Processing 486/719 atomic regions from SNP 145553 to 146153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:55,431 DEBUG Processing 227/702 atomic regions from SNP 67940 to 68540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,501 DEBUG Processing 636/657 atomic regions from SNP 190564 to 191164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:55,520 DEBUG Processing 300/673 atomic regions from SNP 89980 to 90580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,553 DEBUG Processing 487/719 atomic regions from SNP 145853 to 146453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:55,643 DEBUG Processing 228/702 atomic regions from SNP 68240 to 68840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,720 DEBUG Processing 637/657 atomic regions from SNP 190864 to 191464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:55,758 DEBUG Processing 301/673 atomic regions from SNP 90280 to 90880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,769 DEBUG Processing 488/719 atomic regions from SNP 146153 to 146753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:55,852 DEBUG Processing 229/702 atomic regions from SNP 68540 to 69140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,927 DEBUG Processing 638/657 atomic regions from SNP 191164 to 191764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:55,983 DEBUG Processing 489/719 atomic regions from SNP 146453 to 147053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:55,997 DEBUG Processing 302/673 atomic regions from SNP 90580 to 91180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,067 DEBUG Processing 230/702 atomic regions from SNP 68840 to 69440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,161 DEBUG Processing 639/657 atomic regions from SNP 191464 to 192064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:56,193 DEBUG Processing 490/719 atomic regions from SNP 146753 to 147353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:56,235 DEBUG Processing 303/673 atomic regions from SNP 90880 to 91480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,283 DEBUG Processing 231/702 atomic regions from SNP 69140 to 69740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,391 DEBUG Processing 640/657 atomic regions from SNP 191764 to 192364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:56,401 DEBUG Processing 491/719 atomic regions from SNP 147053 to 147653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:56,471 DEBUG Processing 304/673 atomic regions from SNP 91180 to 91780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,497 DEBUG Processing 232/702 atomic regions from SNP 69440 to 70040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,600 DEBUG Processing 641/657 atomic regions from SNP 192064 to 192664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:56,614 DEBUG Processing 492/719 atomic regions from SNP 147353 to 147953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:56,711 DEBUG Processing 233/702 atomic regions from SNP 69740 to 70340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,711 DEBUG Processing 305/673 atomic regions from SNP 91480 to 92080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,835 DEBUG Processing 493/719 atomic regions from SNP 147653 to 148253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:56,840 DEBUG Processing 642/657 atomic regions from SNP 192364 to 192964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:56,926 DEBUG Processing 234/702 atomic regions from SNP 70040 to 70640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,958 DEBUG Processing 306/673 atomic regions from SNP 91780 to 92380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,049 DEBUG Processing 494/719 atomic regions from SNP 147953 to 148553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:57,078 DEBUG Processing 643/657 atomic regions from SNP 192664 to 193264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:57,144 DEBUG Processing 235/702 atomic regions from SNP 70340 to 70940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,184 DEBUG Processing 307/673 atomic regions from SNP 92080 to 92680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,271 DEBUG Processing 495/719 atomic regions from SNP 148253 to 148853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:57,316 DEBUG Processing 644/657 atomic regions from SNP 192964 to 193564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:57,375 DEBUG Processing 236/702 atomic regions from SNP 70640 to 71240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,391 DEBUG Processing 308/673 atomic regions from SNP 92380 to 92980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,392 DEBUG Segmenting atomic regions: 2025-01-31 09:57:57,477 DEBUG Processing 1/656 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,504 DEBUG Processing 496/719 atomic regions from SNP 148553 to 149153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:57,549 DEBUG Processing 645/657 atomic regions from SNP 193264 to 193864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:57,595 DEBUG Processing 237/702 atomic regions from SNP 70940 to 71540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,610 DEBUG Processing 309/673 atomic regions from SNP 92680 to 93280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,709 DEBUG Processing 2/656 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,733 DEBUG Processing 497/719 atomic regions from SNP 148853 to 149453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:57,763 DEBUG Processing 646/657 atomic regions from SNP 193564 to 194164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:57,814 DEBUG Processing 238/702 atomic regions from SNP 71240 to 71840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,825 DEBUG Processing 310/673 atomic regions from SNP 92980 to 93580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,946 DEBUG Processing 3/656 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,954 DEBUG Processing 498/719 atomic regions from SNP 149153 to 149753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:57,979 DEBUG Processing 647/657 atomic regions from SNP 193864 to 194464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:58,036 DEBUG Processing 311/673 atomic regions from SNP 93280 to 93880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,038 DEBUG Processing 239/702 atomic regions from SNP 71540 to 72140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,181 DEBUG Processing 499/719 atomic regions from SNP 149453 to 150053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:58,189 DEBUG Processing 4/656 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,196 DEBUG Processing 648/657 atomic regions from SNP 194164 to 194764 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:58,262 DEBUG Processing 312/673 atomic regions from SNP 93580 to 94180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,268 DEBUG Processing 240/702 atomic regions from SNP 71840 to 72440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,405 DEBUG Processing 500/719 atomic regions from SNP 149753 to 150353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:58,422 DEBUG Processing 5/656 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,427 DEBUG Processing 649/657 atomic regions from SNP 194464 to 195064 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:58,494 DEBUG Processing 241/702 atomic regions from SNP 72140 to 72740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,496 DEBUG Processing 313/673 atomic regions from SNP 93880 to 94480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,645 DEBUG Processing 501/719 atomic regions from SNP 150053 to 150653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:58,653 DEBUG Processing 650/657 atomic regions from SNP 194764 to 195364 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:58,671 DEBUG Processing 6/656 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,707 DEBUG Processing 314/673 atomic regions from SNP 94180 to 94780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,719 DEBUG Processing 242/702 atomic regions from SNP 72440 to 73040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,869 DEBUG Processing 502/719 atomic regions from SNP 150353 to 150953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:58,872 DEBUG Processing 651/657 atomic regions from SNP 195064 to 195664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:58,904 DEBUG Processing 7/656 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,923 DEBUG Processing 315/673 atomic regions from SNP 94480 to 95080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,944 DEBUG Processing 243/702 atomic regions from SNP 72740 to 73340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,087 DEBUG Processing 652/657 atomic regions from SNP 195364 to 195964 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:59,090 DEBUG Processing 503/719 atomic regions from SNP 150653 to 151253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:59,138 DEBUG Processing 8/656 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,139 DEBUG Processing 316/673 atomic regions from SNP 94780 to 95380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,179 DEBUG Processing 244/702 atomic regions from SNP 73040 to 73640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,300 DEBUG Processing 653/657 atomic regions from SNP 195664 to 196264 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:59,307 DEBUG Processing 504/719 atomic regions from SNP 150953 to 151553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:59,358 DEBUG Processing 9/656 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,362 DEBUG Processing 317/673 atomic regions from SNP 95080 to 95680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,433 DEBUG Processing 245/702 atomic regions from SNP 73340 to 73940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,544 DEBUG Processing 505/719 atomic regions from SNP 151253 to 151853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:59,545 DEBUG Processing 654/657 atomic regions from SNP 195964 to 196564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:59,582 DEBUG Processing 318/673 atomic regions from SNP 95380 to 95980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,589 DEBUG Processing 10/656 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,659 DEBUG Processing 246/702 atomic regions from SNP 73640 to 74240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,764 DEBUG Processing 506/719 atomic regions from SNP 151553 to 152153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:59,768 DEBUG Processing 655/657 atomic regions from SNP 196264 to 196864 for chr14 (subchromosome 2 of 2). 2025-01-31 09:57:59,798 DEBUG Processing 319/673 atomic regions from SNP 95680 to 96280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,812 DEBUG Processing 11/656 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,875 DEBUG Processing 247/702 atomic regions from SNP 73940 to 74540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:59,981 DEBUG Processing 507/719 atomic regions from SNP 151853 to 152453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:57:59,988 DEBUG Processing 656/657 atomic regions from SNP 196564 to 197164 for chr14 (subchromosome 2 of 2). 2025-01-31 09:58:00,011 DEBUG Processing 320/673 atomic regions from SNP 95980 to 96580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,052 DEBUG Processing 12/656 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,093 DEBUG Processing 248/702 atomic regions from SNP 74240 to 74840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,208 DEBUG Processing 508/719 atomic regions from SNP 152153 to 152753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:00,209 DEBUG Processing 657/657 atomic regions from SNP 196864 to 197464 for chr14 (subchromosome 2 of 2). 2025-01-31 09:58:00,249 DEBUG Processing 321/673 atomic regions from SNP 96280 to 96880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,263 DEBUG Processing 13/656 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,315 DEBUG Processing 249/702 atomic regions from SNP 74540 to 75140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,346 DEBUG Unique SNPs positions in subchromosome 2: 197465 2025-01-31 09:58:00,440 DEBUG Processing 509/719 atomic regions from SNP 152453 to 153053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:00,497 DEBUG Processing 14/656 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,515 DEBUG Processing 322/673 atomic regions from SNP 96580 to 97180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,551 DEBUG Processing 250/702 atomic regions from SNP 74840 to 75440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,687 DEBUG Processing 510/719 atomic regions from SNP 152753 to 153353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:00,722 DEBUG Processing 15/656 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,782 DEBUG Processing 323/673 atomic regions from SNP 96880 to 97480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,795 DEBUG Processing 251/702 atomic regions from SNP 75140 to 75740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:00,904 DEBUG Processing 511/719 atomic regions from SNP 153053 to 153653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:00,929 DEBUG Processing 16/656 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,019 DEBUG Processing 252/702 atomic regions from SNP 75440 to 76040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,030 DEBUG Processing 324/673 atomic regions from SNP 97180 to 97780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,129 DEBUG Processing 512/719 atomic regions from SNP 153353 to 153953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:01,148 DEBUG Processing 17/656 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,245 DEBUG Processing 253/702 atomic regions from SNP 75740 to 76340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,252 DEBUG Processing 325/673 atomic regions from SNP 97480 to 98080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,348 DEBUG Processing 513/719 atomic regions from SNP 153653 to 154253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:01,357 DEBUG Processing 18/656 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,466 DEBUG Processing 326/673 atomic regions from SNP 97780 to 98380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,470 DEBUG Processing 254/702 atomic regions from SNP 76040 to 76640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,565 DEBUG Processing 19/656 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,575 DEBUG Processing 514/719 atomic regions from SNP 153953 to 154553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:01,680 DEBUG Processing 327/673 atomic regions from SNP 98080 to 98680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,696 DEBUG Processing 255/702 atomic regions from SNP 76340 to 76940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,772 DEBUG Processing 20/656 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,817 DEBUG Processing 515/719 atomic regions from SNP 154253 to 154853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:01,898 DEBUG Processing 328/673 atomic regions from SNP 98380 to 98980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,917 DEBUG Processing 256/702 atomic regions from SNP 76640 to 77240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:01,981 DEBUG Processing 21/656 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,049 DEBUG Processing 516/719 atomic regions from SNP 154553 to 155153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:02,118 DEBUG Processing 329/673 atomic regions from SNP 98680 to 99280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,134 DEBUG Processing 257/702 atomic regions from SNP 76940 to 77540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,186 DEBUG Processing 22/656 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,264 DEBUG Processing 517/719 atomic regions from SNP 154853 to 155453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:02,342 DEBUG Processing 330/673 atomic regions from SNP 98980 to 99580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,352 DEBUG Processing 258/702 atomic regions from SNP 77240 to 77840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,398 DEBUG Processing 23/656 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,486 DEBUG Processing 518/719 atomic regions from SNP 155153 to 155753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:02,572 DEBUG Processing 259/702 atomic regions from SNP 77540 to 78140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,583 DEBUG Processing 331/673 atomic regions from SNP 99280 to 99880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,630 DEBUG Processing 24/656 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,711 DEBUG Processing 519/719 atomic regions from SNP 155453 to 156053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:02,816 DEBUG Processing 260/702 atomic regions from SNP 77840 to 78440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:02,833 DEBUG Processing 332/673 atomic regions from SNP 99580 to 100180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,837 DEBUG Processing 25/656 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,925 DEBUG Processing 520/719 atomic regions from SNP 155753 to 156353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:03,040 DEBUG Processing 26/656 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,054 DEBUG Processing 261/702 atomic regions from SNP 78140 to 78740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,054 DEBUG Processing 333/673 atomic regions from SNP 99880 to 100480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,137 DEBUG Processing 521/719 atomic regions from SNP 156053 to 156653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:03,254 DEBUG Processing 27/656 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,261 DEBUG Processing 334/673 atomic regions from SNP 100180 to 100780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,278 DEBUG Processing 262/702 atomic regions from SNP 78440 to 79040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,352 DEBUG Processing 522/719 atomic regions from SNP 156353 to 156953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:03,464 DEBUG Processing 28/656 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,476 DEBUG Processing 335/673 atomic regions from SNP 100480 to 101080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,497 DEBUG Processing 263/702 atomic regions from SNP 78740 to 79340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,564 DEBUG Processing 523/719 atomic regions from SNP 156653 to 157253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:03,664 DEBUG Processing 29/656 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,694 DEBUG Processing 336/673 atomic regions from SNP 100780 to 101380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,710 DEBUG Processing 264/702 atomic regions from SNP 79040 to 79640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,779 DEBUG Processing 524/719 atomic regions from SNP 156953 to 157553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:03,868 DEBUG Processing 30/656 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,905 DEBUG Processing 337/673 atomic regions from SNP 101080 to 101680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,938 DEBUG Processing 265/702 atomic regions from SNP 79340 to 79940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:03,994 DEBUG Processing 525/719 atomic regions from SNP 157253 to 157853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:04,065 DEBUG Processing 31/656 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,100 DEBUG Processing 338/673 atomic regions from SNP 101380 to 101980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,158 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:58:04,168 DEBUG Processing 266/702 atomic regions from SNP 79640 to 80240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,211 DEBUG Processing 526/719 atomic regions from SNP 157553 to 158153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:04,270 DEBUG Processing 32/656 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,300 DEBUG Processing 339/673 atomic regions from SNP 101680 to 102280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,387 DEBUG Processing 267/702 atomic regions from SNP 79940 to 80540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,434 DEBUG Processing 527/719 atomic regions from SNP 157853 to 158453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:04,502 DEBUG Processing 33/656 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,504 DEBUG Processing 340/673 atomic regions from SNP 101980 to 102580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,631 DEBUG Processing 268/702 atomic regions from SNP 80240 to 80840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,656 DEBUG Processing 528/719 atomic regions from SNP 158153 to 158753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:04,709 DEBUG Processing 341/673 atomic regions from SNP 102280 to 102880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,727 DEBUG Processing 34/656 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,881 DEBUG Processing 529/719 atomic regions from SNP 158453 to 159053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:04,881 DEBUG Processing 269/702 atomic regions from SNP 80540 to 81140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:04,917 DEBUG Processing 342/673 atomic regions from SNP 102580 to 103180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,948 DEBUG Processing 35/656 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,113 DEBUG Processing 530/719 atomic regions from SNP 158753 to 159353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:05,115 DEBUG Processing 270/702 atomic regions from SNP 80840 to 81440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,128 DEBUG Processing 343/673 atomic regions from SNP 102880 to 103480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,174 DEBUG Processing 36/656 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,348 DEBUG Processing 344/673 atomic regions from SNP 103180 to 103780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,354 DEBUG Processing 531/719 atomic regions from SNP 159053 to 159653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:05,357 DEBUG Processing 271/702 atomic regions from SNP 81140 to 81740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,408 DEBUG Processing 37/656 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,619 DEBUG Processing 345/673 atomic regions from SNP 103480 to 104080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,648 DEBUG Processing 272/702 atomic regions from SNP 81440 to 82040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,652 DEBUG Processing 532/719 atomic regions from SNP 159353 to 159953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:05,675 DEBUG Processing 38/656 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,853 DEBUG Processing 346/673 atomic regions from SNP 103780 to 104380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,922 DEBUG Processing 273/702 atomic regions from SNP 81740 to 82340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:05,989 DEBUG Processing 533/719 atomic regions from SNP 159653 to 160253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:06,012 DEBUG Processing 39/656 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,158 DEBUG Processing 347/673 atomic regions from SNP 104080 to 104680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,256 DEBUG Processing 274/702 atomic regions from SNP 82040 to 82640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,341 DEBUG Processing 534/719 atomic regions from SNP 159953 to 160553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:06,346 DEBUG Processing 40/656 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,519 DEBUG Processing 348/673 atomic regions from SNP 104380 to 104980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,547 DEBUG Processing 275/702 atomic regions from SNP 82340 to 82940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,614 DEBUG Processing 41/656 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,617 DEBUG Processing 535/719 atomic regions from SNP 160253 to 160853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:06,777 DEBUG Processing 349/673 atomic regions from SNP 104680 to 105280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,852 DEBUG Processing 276/702 atomic regions from SNP 82640 to 83240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:06,869 DEBUG Processing 42/656 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,898 DEBUG Processing 536/719 atomic regions from SNP 160553 to 161153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:07,070 DEBUG Processing 350/673 atomic regions from SNP 104980 to 105580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,110 DEBUG Processing 43/656 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,133 DEBUG Processing 277/702 atomic regions from SNP 82940 to 83540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,153 DEBUG Processing 537/719 atomic regions from SNP 160853 to 161453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:07,307 DEBUG Processing 351/673 atomic regions from SNP 105280 to 105880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,327 DEBUG Processing 44/656 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,379 DEBUG Processing 538/719 atomic regions from SNP 161153 to 161753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:07,385 DEBUG Processing 278/702 atomic regions from SNP 83240 to 83840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,520 DEBUG Processing 352/673 atomic regions from SNP 105580 to 106180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,533 DEBUG Processing 45/656 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,622 DEBUG Processing 279/702 atomic regions from SNP 83540 to 84140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,623 DEBUG Processing 539/719 atomic regions from SNP 161453 to 162053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:07,736 DEBUG Processing 46/656 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,742 DEBUG Processing 353/673 atomic regions from SNP 105880 to 106480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,848 DEBUG Processing 280/702 atomic regions from SNP 83840 to 84440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:07,853 DEBUG Processing 540/719 atomic regions from SNP 161753 to 162353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:07,935 DEBUG Processing 47/656 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,963 DEBUG Processing 354/673 atomic regions from SNP 106180 to 106780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,065 DEBUG Processing 541/719 atomic regions from SNP 162053 to 162653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:08,087 DEBUG Processing 281/702 atomic regions from SNP 84140 to 84740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,142 DEBUG Processing 48/656 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,195 DEBUG Processing 355/673 atomic regions from SNP 106480 to 107080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,286 DEBUG Processing 542/719 atomic regions from SNP 162353 to 162953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:08,307 DEBUG Processing 282/702 atomic regions from SNP 84440 to 85040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,357 DEBUG Processing 49/656 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,432 DEBUG Processing 356/673 atomic regions from SNP 106780 to 107380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,498 DEBUG Processing 543/719 atomic regions from SNP 162653 to 163253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:08,521 DEBUG Processing 283/702 atomic regions from SNP 84740 to 85340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,562 DEBUG Processing 50/656 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,657 DEBUG Processing 357/673 atomic regions from SNP 107080 to 107680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,716 DEBUG Processing 544/719 atomic regions from SNP 162953 to 163553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:08,738 DEBUG Processing 284/702 atomic regions from SNP 85040 to 85640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,762 DEBUG Processing 51/656 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,857 DEBUG Processing 358/673 atomic regions from SNP 107380 to 107980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,956 DEBUG Processing 285/702 atomic regions from SNP 85340 to 85940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:08,964 DEBUG Processing 545/719 atomic regions from SNP 163253 to 163853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:08,974 DEBUG Processing 52/656 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,055 DEBUG Processing 359/673 atomic regions from SNP 107680 to 108280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,188 DEBUG Processing 286/702 atomic regions from SNP 85640 to 86240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,191 DEBUG Processing 53/656 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,213 DEBUG Processing 546/719 atomic regions from SNP 163553 to 164153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:09,265 DEBUG Processing 360/673 atomic regions from SNP 107980 to 108580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,423 DEBUG Processing 54/656 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,440 DEBUG Processing 287/702 atomic regions from SNP 85940 to 86540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,484 DEBUG Processing 547/719 atomic regions from SNP 163853 to 164453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:09,542 DEBUG Processing 361/673 atomic regions from SNP 108280 to 108880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,731 DEBUG Processing 55/656 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,796 DEBUG Processing 288/702 atomic regions from SNP 86240 to 86840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:09,821 DEBUG Processing 548/719 atomic regions from SNP 164153 to 164753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:09,846 DEBUG Processing 362/673 atomic regions from SNP 108580 to 109180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,024 DEBUG Processing 56/656 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,077 DEBUG Processing 363/673 atomic regions from SNP 108880 to 109480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,094 DEBUG Processing 289/702 atomic regions from SNP 86540 to 87140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,100 DEBUG Processing 549/719 atomic regions from SNP 164453 to 165053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:10,262 DEBUG Processing 57/656 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,299 DEBUG Processing 364/673 atomic regions from SNP 109180 to 109780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,358 DEBUG Processing 290/702 atomic regions from SNP 86840 to 87440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,368 DEBUG Processing 550/719 atomic regions from SNP 164753 to 165353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:10,520 DEBUG Processing 58/656 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,569 DEBUG Processing 365/673 atomic regions from SNP 109480 to 110080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,656 DEBUG Processing 291/702 atomic regions from SNP 87140 to 87740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:10,686 DEBUG Processing 551/719 atomic regions from SNP 165053 to 165653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:10,777 DEBUG Processing 59/656 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,854 DEBUG Processing 366/673 atomic regions from SNP 109780 to 110380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,967 DEBUG Processing 292/702 atomic regions from SNP 87440 to 88040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:11,036 DEBUG Processing 552/719 atomic regions from SNP 165353 to 165953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:11,101 DEBUG Processing 60/656 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,193 DEBUG Processing 367/673 atomic regions from SNP 110080 to 110680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,271 DEBUG Processing 293/702 atomic regions from SNP 87740 to 88340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:11,354 DEBUG Processing 553/719 atomic regions from SNP 165653 to 166253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:11,369 DEBUG Processing 61/656 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,443 DEBUG Processing 368/673 atomic regions from SNP 110380 to 110980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,577 DEBUG Processing 294/702 atomic regions from SNP 88040 to 88640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:11,673 DEBUG Processing 62/656 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,707 DEBUG Processing 554/719 atomic regions from SNP 165953 to 166553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:11,748 DEBUG Processing 369/673 atomic regions from SNP 110680 to 111280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,923 DEBUG Processing 295/702 atomic regions from SNP 88340 to 88940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,002 DEBUG Processing 63/656 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,038 DEBUG Processing 555/719 atomic regions from SNP 166253 to 166853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:12,065 DEBUG Processing 370/673 atomic regions from SNP 110980 to 111580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,262 DEBUG Processing 296/702 atomic regions from SNP 88640 to 89240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,333 DEBUG Processing 64/656 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,377 DEBUG Processing 556/719 atomic regions from SNP 166553 to 167153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:12,399 DEBUG Processing 371/673 atomic regions from SNP 111280 to 111880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,550 DEBUG Processing 297/702 atomic regions from SNP 88940 to 89540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,563 DEBUG Processing 65/656 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,620 DEBUG Processing 557/719 atomic regions from SNP 166853 to 167453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:12,624 DEBUG Processing 372/673 atomic regions from SNP 111580 to 112180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,821 DEBUG Processing 66/656 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,829 DEBUG Processing 298/702 atomic regions from SNP 89240 to 89840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:12,888 DEBUG Processing 373/673 atomic regions from SNP 111880 to 112480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,906 DEBUG Processing 558/719 atomic regions from SNP 167153 to 167753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:13,033 DEBUG Processing 67/656 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,054 DEBUG Processing 299/702 atomic regions from SNP 89540 to 90140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,111 DEBUG Processing 374/673 atomic regions from SNP 112180 to 112780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,132 DEBUG Processing 559/719 atomic regions from SNP 167453 to 168053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:13,242 DEBUG Processing 68/656 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,299 DEBUG Processing 300/702 atomic regions from SNP 89840 to 90440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,318 DEBUG Processing 375/673 atomic regions from SNP 112480 to 113080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,348 DEBUG Processing 560/719 atomic regions from SNP 167753 to 168353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:13,453 DEBUG Processing 69/656 atomic regions from SNP 20468 to 21068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,524 DEBUG Processing 301/702 atomic regions from SNP 90140 to 90740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,563 DEBUG Processing 376/673 atomic regions from SNP 112780 to 113380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,572 DEBUG Processing 561/719 atomic regions from SNP 168053 to 168653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:13,671 DEBUG Processing 70/656 atomic regions from SNP 20768 to 21368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,749 DEBUG Processing 302/702 atomic regions from SNP 90440 to 91040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:13,803 DEBUG Processing 562/719 atomic regions from SNP 168353 to 168953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:13,805 DEBUG Processing 377/673 atomic regions from SNP 113080 to 113680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,887 DEBUG Processing 71/656 atomic regions from SNP 21068 to 21668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,971 DEBUG Processing 303/702 atomic regions from SNP 90740 to 91340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,029 DEBUG Processing 563/719 atomic regions from SNP 168653 to 169253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:14,030 DEBUG Processing 378/673 atomic regions from SNP 113380 to 113980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,097 DEBUG Processing 72/656 atomic regions from SNP 21368 to 21968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,186 DEBUG Processing 304/702 atomic regions from SNP 91040 to 91640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,244 DEBUG Processing 379/673 atomic regions from SNP 113680 to 114280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,251 DEBUG Processing 564/719 atomic regions from SNP 168953 to 169553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:14,304 DEBUG Processing 73/656 atomic regions from SNP 21668 to 22268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,408 DEBUG Processing 305/702 atomic regions from SNP 91340 to 91940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,455 DEBUG Processing 380/673 atomic regions from SNP 113980 to 114580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,477 DEBUG Processing 565/719 atomic regions from SNP 169253 to 169853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:14,516 DEBUG Processing 74/656 atomic regions from SNP 21968 to 22568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,633 DEBUG Processing 306/702 atomic regions from SNP 91640 to 92240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,669 DEBUG Processing 381/673 atomic regions from SNP 114280 to 114880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,711 DEBUG Processing 566/719 atomic regions from SNP 169553 to 170153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:14,739 DEBUG Processing 75/656 atomic regions from SNP 22268 to 22868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,866 DEBUG Processing 307/702 atomic regions from SNP 91940 to 92540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:14,888 DEBUG Processing 382/673 atomic regions from SNP 114580 to 115180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,956 DEBUG Processing 76/656 atomic regions from SNP 22568 to 23168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,960 DEBUG Processing 567/719 atomic regions from SNP 169853 to 170453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:15,081 DEBUG Processing 308/702 atomic regions from SNP 92240 to 92840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,093 DEBUG Processing 383/673 atomic regions from SNP 114880 to 115480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,161 DEBUG Processing 77/656 atomic regions from SNP 22868 to 23468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,204 DEBUG Processing 568/719 atomic regions from SNP 170153 to 170753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:15,295 DEBUG Processing 384/673 atomic regions from SNP 115180 to 115780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,299 DEBUG Processing 309/702 atomic regions from SNP 92540 to 93140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,367 DEBUG Processing 78/656 atomic regions from SNP 23168 to 23768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,436 DEBUG Processing 569/719 atomic regions from SNP 170453 to 171053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:15,492 DEBUG Processing 385/673 atomic regions from SNP 115480 to 116080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,509 DEBUG Processing 310/702 atomic regions from SNP 92840 to 93440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,569 DEBUG Processing 79/656 atomic regions from SNP 23468 to 24068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,667 DEBUG Processing 570/719 atomic regions from SNP 170753 to 171353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:15,689 DEBUG Processing 386/673 atomic regions from SNP 115780 to 116380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,721 DEBUG Processing 311/702 atomic regions from SNP 93140 to 93740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:15,773 DEBUG Processing 80/656 atomic regions from SNP 23768 to 24368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,889 DEBUG Processing 387/673 atomic regions from SNP 116080 to 116680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,898 DEBUG Processing 571/719 atomic regions from SNP 171053 to 171653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:15,945 DEBUG Processing 312/702 atomic regions from SNP 93440 to 94040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,002 DEBUG Processing 81/656 atomic regions from SNP 24068 to 24668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,088 DEBUG Processing 388/673 atomic regions from SNP 116380 to 116980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,123 DEBUG Processing 572/719 atomic regions from SNP 171353 to 171953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:16,196 DEBUG Processing 313/702 atomic regions from SNP 93740 to 94340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,230 DEBUG Processing 82/656 atomic regions from SNP 24368 to 24968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,287 DEBUG Processing 389/673 atomic regions from SNP 116680 to 117280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,342 DEBUG Processing 573/719 atomic regions from SNP 171653 to 172253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:16,438 DEBUG Processing 314/702 atomic regions from SNP 94040 to 94640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,440 DEBUG Processing 83/656 atomic regions from SNP 24668 to 25268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,488 DEBUG Processing 390/673 atomic regions from SNP 116980 to 117580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,568 DEBUG Processing 574/719 atomic regions from SNP 171953 to 172553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:16,657 DEBUG Processing 84/656 atomic regions from SNP 24968 to 25568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,686 DEBUG Processing 315/702 atomic regions from SNP 94340 to 94940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:16,690 DEBUG Processing 391/673 atomic regions from SNP 117280 to 117880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,789 DEBUG Processing 575/719 atomic regions from SNP 172253 to 172853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:16,895 DEBUG Processing 85/656 atomic regions from SNP 25268 to 25868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,895 DEBUG Processing 392/673 atomic regions from SNP 117580 to 118180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,931 DEBUG Processing 316/702 atomic regions from SNP 94640 to 95240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,036 DEBUG Processing 576/719 atomic regions from SNP 172553 to 173153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:17,130 DEBUG Processing 393/673 atomic regions from SNP 117880 to 118480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,142 DEBUG Processing 86/656 atomic regions from SNP 25568 to 26168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,187 DEBUG Processing 317/702 atomic regions from SNP 94940 to 95540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,282 DEBUG Processing 577/719 atomic regions from SNP 172853 to 173453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:17,350 DEBUG Processing 394/673 atomic regions from SNP 118180 to 118780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,378 DEBUG Processing 87/656 atomic regions from SNP 25868 to 26468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,411 DEBUG Processing 318/702 atomic regions from SNP 95240 to 95840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,508 DEBUG Processing 578/719 atomic regions from SNP 173153 to 173753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:17,556 DEBUG Processing 395/673 atomic regions from SNP 118480 to 119080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,593 DEBUG Processing 88/656 atomic regions from SNP 26168 to 26768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,631 DEBUG Processing 319/702 atomic regions from SNP 95540 to 96140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,747 DEBUG Processing 579/719 atomic regions from SNP 173453 to 174053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:17,756 DEBUG Processing 396/673 atomic regions from SNP 118780 to 119380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,812 DEBUG Processing 89/656 atomic regions from SNP 26468 to 27068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,877 DEBUG Processing 320/702 atomic regions from SNP 95840 to 96440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:17,958 DEBUG Processing 397/673 atomic regions from SNP 119080 to 119680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,991 DEBUG Processing 580/719 atomic regions from SNP 173753 to 174353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:18,030 DEBUG Processing 90/656 atomic regions from SNP 26768 to 27368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,135 DEBUG Processing 321/702 atomic regions from SNP 96140 to 96740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,165 DEBUG Processing 398/673 atomic regions from SNP 119380 to 119980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,221 DEBUG Processing 581/719 atomic regions from SNP 174053 to 174653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:18,245 DEBUG Processing 91/656 atomic regions from SNP 27068 to 27668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,403 DEBUG Processing 322/702 atomic regions from SNP 96440 to 97040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,409 DEBUG Processing 399/673 atomic regions from SNP 119680 to 120280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,452 DEBUG Processing 582/719 atomic regions from SNP 174353 to 174953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:18,464 DEBUG Processing 92/656 atomic regions from SNP 27368 to 27968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,648 DEBUG Processing 400/673 atomic regions from SNP 119980 to 120580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,655 DEBUG Processing 323/702 atomic regions from SNP 96740 to 97340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,679 DEBUG Processing 583/719 atomic regions from SNP 174653 to 175253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:18,680 DEBUG Processing 93/656 atomic regions from SNP 27668 to 28268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,884 DEBUG Subchromosome time: 198.23556752502918, subchromosome SNPs: 197465 2025-01-31 09:58:18,885 DEBUG Estimated BADs: [0.34, 1.70, 8.49, 1.70, 6.79, 3.40, 15.28, 1.70, 0.34, 1.70, 0.85, 3.40, 0.85, 8.49, 1.70, 15.28, 1.70, 10.19, 3.40, 0.57, 5.09, 1.70, 3.40, 0.28, 1.70, 0.28, 1.70, 0.85, 1.70, 0.34, 10.19, 0.42, 1.70, 3.40, 0.42] SNP counts: [154, 21039, 4122, 13708, 4294, 4796, 330, 4379, 5389, 1309, 2315, 8058, 1769, 940, 990, 695, 2314, 2314, 23087, 1185, 3642, 8189, 7699, 10191, 2394, 17713, 1504, 5682, 4814, 15402, 123, 2453, 8553, 4650, 1423] SNP IDs counts: [154, 21039, 4122, 13708, 4294, 4796, 330, 4379, 5389, 1309, 2315, 8058, 1769, 940, 990, 695, 2314, 2314, 23087, 1185, 3642, 8189, 7699, 10191, 2394, 17713, 1504, 5682, 4814, 15402, 123, 2453, 8553, 4650, 1423] Critical gap: 625555bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.69Mbp, 21.86Mbp, 29.69Mbp, 31.95Mbp, 34.50Mbp, 34.68Mbp, 37.17Mbp, 40.44Mbp, 41.19Mbp, 45.28Mbp, 49.64Mbp, 50.78Mbp, 51.31Mbp, 51.98Mbp, 52.34Mbp, 54.36Mbp, 55.59Mbp, 68.05Mbp, 68.72Mbp, 71.11Mbp, 75.75Mbp, 79.90Mbp, 86.31Mbp, 87.63Mbp, 98.64Mbp, 99.45Mbp, 102.66Mbp, 105.42Mbp, 115.00Mbp, 115.06Mbp, 116.52Mbp, 121.24Mbp, 123.87Mbp, 124.90Mbp] 2025-01-31 09:58:18,885 DEBUG chr14 time: 198.236122071743 s 2025-01-31 09:58:18,888 DEBUG Processing 401/673 atomic regions from SNP 120280 to 120880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,907 DEBUG Processing 94/656 atomic regions from SNP 27968 to 28568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,914 DEBUG Processing 324/702 atomic regions from SNP 97040 to 97640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:18,922 DEBUG Processing 584/719 atomic regions from SNP 174953 to 175553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:19,017 DEBUG chr14: Fitting background model for 35 segments 2025-01-31 09:58:19,132 DEBUG Processing 402/673 atomic regions from SNP 120580 to 121180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,134 DEBUG Processing 95/656 atomic regions from SNP 28268 to 28868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,153 DEBUG Processing 325/702 atomic regions from SNP 97340 to 97940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,157 DEBUG Processing 585/719 atomic regions from SNP 175253 to 175853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:19,356 DEBUG Processing 96/656 atomic regions from SNP 28568 to 29168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,369 DEBUG Processing 403/673 atomic regions from SNP 120880 to 121480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,387 DEBUG Processing 586/719 atomic regions from SNP 175553 to 176153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:19,400 DEBUG Processing 326/702 atomic regions from SNP 97640 to 98240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,583 DEBUG Processing 97/656 atomic regions from SNP 28868 to 29468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,601 DEBUG Processing 404/673 atomic regions from SNP 121180 to 121780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,615 DEBUG Processing 587/719 atomic regions from SNP 175853 to 176453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:19,657 DEBUG Processing 327/702 atomic regions from SNP 97940 to 98540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:19,800 DEBUG Processing 98/656 atomic regions from SNP 29168 to 29768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,829 DEBUG Processing 405/673 atomic regions from SNP 121480 to 122080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,854 DEBUG Processing 588/719 atomic regions from SNP 176153 to 176753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:19,925 DEBUG Processing 328/702 atomic regions from SNP 98240 to 98840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,014 DEBUG Processing 99/656 atomic regions from SNP 29468 to 30068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,055 DEBUG Processing 406/673 atomic regions from SNP 121780 to 122380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,106 DEBUG Processing 589/719 atomic regions from SNP 176453 to 177053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:20,188 DEBUG Processing 329/702 atomic regions from SNP 98540 to 99140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,229 DEBUG Processing 100/656 atomic regions from SNP 29768 to 30368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,285 DEBUG Processing 407/673 atomic regions from SNP 122080 to 122680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,359 DEBUG Processing 590/719 atomic regions from SNP 176753 to 177353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:20,434 DEBUG Processing 330/702 atomic regions from SNP 98840 to 99440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,453 DEBUG Processing 101/656 atomic regions from SNP 30068 to 30668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,516 DEBUG Processing 408/673 atomic regions from SNP 122380 to 122980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,585 DEBUG Processing 591/719 atomic regions from SNP 177053 to 177653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:20,685 DEBUG Processing 331/702 atomic regions from SNP 99140 to 99740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,706 DEBUG Processing 102/656 atomic regions from SNP 30368 to 30968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,724 DEBUG Processing 409/673 atomic regions from SNP 122680 to 123280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,826 DEBUG Processing 592/719 atomic regions from SNP 177353 to 177953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:20,859 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:58:20,861 DEBUG chr15: Signal quantile: 0.988. signal threshold: 19. Best RMSEA: 0.009 2025-01-31 09:58:20,931 DEBUG Processing 410/673 atomic regions from SNP 122980 to 123580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:20,941 DEBUG Processing 332/702 atomic regions from SNP 99440 to 100040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:20,958 DEBUG Processing 103/656 atomic regions from SNP 30668 to 31268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,074 DEBUG Processing 593/719 atomic regions from SNP 177653 to 178253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:21,137 DEBUG Processing 411/673 atomic regions from SNP 123280 to 123880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,190 DEBUG Processing 333/702 atomic regions from SNP 99740 to 100340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,201 DEBUG Processing 104/656 atomic regions from SNP 30968 to 31568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,317 DEBUG Processing 594/719 atomic regions from SNP 177953 to 178553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:21,341 DEBUG Processing 412/673 atomic regions from SNP 123580 to 124180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,417 DEBUG Processing 334/702 atomic regions from SNP 100040 to 100640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,440 DEBUG Processing 105/656 atomic regions from SNP 31268 to 31868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,535 DEBUG Processing 595/719 atomic regions from SNP 178253 to 178853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:21,559 DEBUG Processing 413/673 atomic regions from SNP 123880 to 124480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,637 DEBUG Processing 335/702 atomic regions from SNP 100340 to 100940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,646 DEBUG Processing 106/656 atomic regions from SNP 31568 to 32168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,746 DEBUG Processing 596/719 atomic regions from SNP 178553 to 179153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:21,785 DEBUG Processing 414/673 atomic regions from SNP 124180 to 124780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:21,852 DEBUG Processing 107/656 atomic regions from SNP 31868 to 32468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,863 DEBUG Processing 336/702 atomic regions from SNP 100640 to 101240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:21,959 DEBUG Processing 597/719 atomic regions from SNP 178853 to 179453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:22,001 DEBUG Processing 415/673 atomic regions from SNP 124480 to 125080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,058 DEBUG Processing 108/656 atomic regions from SNP 32168 to 32768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,097 DEBUG Processing 337/702 atomic regions from SNP 100940 to 101540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,178 DEBUG Processing 598/719 atomic regions from SNP 179153 to 179753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:22,207 DEBUG Processing 416/673 atomic regions from SNP 124780 to 125380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,265 DEBUG Processing 109/656 atomic regions from SNP 32468 to 33068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,318 DEBUG Processing 338/702 atomic regions from SNP 101240 to 101840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,396 DEBUG Processing 599/719 atomic regions from SNP 179453 to 180053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:22,406 DEBUG Processing 417/673 atomic regions from SNP 125080 to 125680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,467 DEBUG Processing 110/656 atomic regions from SNP 32768 to 33368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,534 DEBUG Processing 339/702 atomic regions from SNP 101540 to 102140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,611 DEBUG Processing 418/673 atomic regions from SNP 125380 to 125980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,615 DEBUG Processing 600/719 atomic regions from SNP 179753 to 180353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:22,679 DEBUG Processing 111/656 atomic regions from SNP 33068 to 33668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,696 DEBUG chr15 total SNP count: 178333 2025-01-31 09:58:22,696 DEBUG chr15 length: 104043685 2025-01-31 09:58:22,696 DEBUG ----------------------------------------- 2025-01-31 09:58:22,696 INFO Processing SNPs in chr15 2025-01-31 09:58:22,754 DEBUG Processing 340/702 atomic regions from SNP 101840 to 102440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:22,818 DEBUG Processing 419/673 atomic regions from SNP 125680 to 126280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:22,828 DEBUG Processing 601/719 atomic regions from SNP 180053 to 180653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:22,868 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 178333)] 2025-01-31 09:58:22,883 DEBUG Processing 112/656 atomic regions from SNP 33368 to 33968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,988 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:22,993 DEBUG Processing 341/702 atomic regions from SNP 102140 to 102740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,020 DEBUG Processing 420/673 atomic regions from SNP 125980 to 126580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,045 DEBUG Processing 602/719 atomic regions from SNP 180353 to 180953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:23,092 DEBUG Processing 113/656 atomic regions from SNP 33668 to 34268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,219 DEBUG Processing 421/673 atomic regions from SNP 126280 to 126880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,226 DEBUG Processing 342/702 atomic regions from SNP 102440 to 103040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,262 DEBUG Processing 603/719 atomic regions from SNP 180653 to 181253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:23,300 DEBUG Processing 114/656 atomic regions from SNP 33968 to 34568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,422 DEBUG Processing 422/673 atomic regions from SNP 126580 to 127180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,477 DEBUG Processing 343/702 atomic regions from SNP 102740 to 103340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,481 DEBUG Processing 604/719 atomic regions from SNP 180953 to 181553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:23,509 DEBUG Processing 115/656 atomic regions from SNP 34268 to 34868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,628 DEBUG Processing 423/673 atomic regions from SNP 126880 to 127480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,696 DEBUG Processing 344/702 atomic regions from SNP 103040 to 103640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,704 DEBUG Processing 605/719 atomic regions from SNP 181253 to 181853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:23,721 DEBUG Processing 116/656 atomic regions from SNP 34568 to 35168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,828 DEBUG Processing 424/673 atomic regions from SNP 127180 to 127780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:23,913 DEBUG Processing 345/702 atomic regions from SNP 103340 to 103940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:23,927 DEBUG Processing 606/719 atomic regions from SNP 181553 to 182153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:23,931 DEBUG Processing 117/656 atomic regions from SNP 34868 to 35468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,027 DEBUG Processing 425/673 atomic regions from SNP 127480 to 128080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,134 DEBUG Processing 346/702 atomic regions from SNP 103640 to 104240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,142 DEBUG Processing 118/656 atomic regions from SNP 35168 to 35768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,163 DEBUG Processing 607/719 atomic regions from SNP 181853 to 182453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:24,227 DEBUG Processing 426/673 atomic regions from SNP 127780 to 128380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,350 DEBUG Processing 347/702 atomic regions from SNP 103940 to 104540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,352 DEBUG Processing 119/656 atomic regions from SNP 35468 to 36068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,380 DEBUG Processing 608/719 atomic regions from SNP 182153 to 182753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:24,440 DEBUG Processing 427/673 atomic regions from SNP 128080 to 128680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,565 DEBUG Processing 120/656 atomic regions from SNP 35768 to 36368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,569 DEBUG Processing 348/702 atomic regions from SNP 104240 to 104840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,599 DEBUG Processing 609/719 atomic regions from SNP 182453 to 183053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:24,666 DEBUG Processing 428/673 atomic regions from SNP 128380 to 128980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,776 DEBUG Processing 121/656 atomic regions from SNP 36068 to 36668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,788 DEBUG Processing 349/702 atomic regions from SNP 104540 to 105140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:24,820 DEBUG Processing 610/719 atomic regions from SNP 182753 to 183353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:24,868 DEBUG Processing 429/673 atomic regions from SNP 128680 to 129280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:24,979 DEBUG Processing 122/656 atomic regions from SNP 36368 to 36968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,004 DEBUG Processing 350/702 atomic regions from SNP 104840 to 105440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,062 DEBUG Processing 611/719 atomic regions from SNP 183053 to 183653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:25,072 DEBUG Processing 430/673 atomic regions from SNP 128980 to 129580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,182 DEBUG Processing 123/656 atomic regions from SNP 36668 to 37268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,222 DEBUG Processing 351/702 atomic regions from SNP 105140 to 105740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,278 DEBUG Processing 431/673 atomic regions from SNP 129280 to 129880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,316 DEBUG Processing 612/719 atomic regions from SNP 183353 to 183953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:25,387 DEBUG Processing 124/656 atomic regions from SNP 36968 to 37568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,434 DEBUG Processing 352/702 atomic regions from SNP 105440 to 106040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,478 DEBUG Processing 432/673 atomic regions from SNP 129580 to 130180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,563 DEBUG Processing 613/719 atomic regions from SNP 183653 to 184253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:25,592 DEBUG Processing 125/656 atomic regions from SNP 37268 to 37868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,647 DEBUG Processing 353/702 atomic regions from SNP 105740 to 106340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,677 DEBUG Processing 433/673 atomic regions from SNP 129880 to 130480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:25,790 DEBUG Processing 614/719 atomic regions from SNP 183953 to 184553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:25,816 DEBUG Processing 126/656 atomic regions from SNP 37568 to 38168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,868 DEBUG Processing 354/702 atomic regions from SNP 106040 to 106640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:25,881 DEBUG Processing 434/673 atomic regions from SNP 130180 to 130780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,030 DEBUG Processing 615/719 atomic regions from SNP 184253 to 184853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:26,058 DEBUG Processing 127/656 atomic regions from SNP 37868 to 38468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,083 DEBUG Processing 355/702 atomic regions from SNP 106340 to 106940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,086 DEBUG Processing 435/673 atomic regions from SNP 130480 to 131080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,268 DEBUG Processing 616/719 atomic regions from SNP 184553 to 185153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:26,289 DEBUG Processing 436/673 atomic regions from SNP 130780 to 131380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,297 DEBUG Processing 128/656 atomic regions from SNP 38168 to 38768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,308 DEBUG Processing 356/702 atomic regions from SNP 106640 to 107240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,495 DEBUG Processing 437/673 atomic regions from SNP 131080 to 131680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,499 DEBUG Processing 617/719 atomic regions from SNP 184853 to 185453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:26,519 DEBUG Processing 129/656 atomic regions from SNP 38468 to 39068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,539 DEBUG Processing 357/702 atomic regions from SNP 106940 to 107540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,705 DEBUG Processing 438/673 atomic regions from SNP 131380 to 131980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,744 DEBUG Processing 130/656 atomic regions from SNP 38768 to 39368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,764 DEBUG Processing 618/719 atomic regions from SNP 185153 to 185753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:26,771 DEBUG Processing 358/702 atomic regions from SNP 107240 to 107840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:26,910 DEBUG Processing 439/673 atomic regions from SNP 131680 to 132280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:26,963 DEBUG Processing 131/656 atomic regions from SNP 39068 to 39668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,988 DEBUG Processing 359/702 atomic regions from SNP 107540 to 108140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,021 DEBUG Processing 619/719 atomic regions from SNP 185453 to 186053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:27,111 DEBUG Processing 440/673 atomic regions from SNP 131980 to 132580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,171 DEBUG Processing 132/656 atomic regions from SNP 39368 to 39968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,202 DEBUG Processing 360/702 atomic regions from SNP 107840 to 108440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,267 DEBUG Processing 620/719 atomic regions from SNP 185753 to 186353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:27,311 DEBUG Processing 441/673 atomic regions from SNP 132280 to 132880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,383 DEBUG Processing 133/656 atomic regions from SNP 39668 to 40268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,417 DEBUG Processing 361/702 atomic regions from SNP 108140 to 108740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,503 DEBUG Processing 621/719 atomic regions from SNP 186053 to 186653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:27,517 DEBUG Processing 442/673 atomic regions from SNP 132580 to 133180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,584 DEBUG Processing 134/656 atomic regions from SNP 39968 to 40568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,627 DEBUG Processing 362/702 atomic regions from SNP 108440 to 109040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,746 DEBUG Processing 443/673 atomic regions from SNP 132880 to 133480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,750 DEBUG Processing 622/719 atomic regions from SNP 186353 to 186953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:27,788 DEBUG Processing 135/656 atomic regions from SNP 40268 to 40868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,839 DEBUG Processing 363/702 atomic regions from SNP 108740 to 109340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:27,956 DEBUG Processing 444/673 atomic regions from SNP 133180 to 133780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:27,997 DEBUG Processing 136/656 atomic regions from SNP 40568 to 41168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,004 DEBUG Processing 623/719 atomic regions from SNP 186653 to 187253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:28,057 DEBUG Processing 364/702 atomic regions from SNP 109040 to 109640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,160 DEBUG Processing 445/673 atomic regions from SNP 133480 to 134080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:28,212 DEBUG Processing 137/656 atomic regions from SNP 40868 to 41468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,266 DEBUG Processing 624/719 atomic regions from SNP 186953 to 187553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:28,281 DEBUG Processing 365/702 atomic regions from SNP 109340 to 109940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,364 DEBUG Processing 446/673 atomic regions from SNP 133780 to 134380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:28,432 DEBUG Processing 138/656 atomic regions from SNP 41168 to 41768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,527 DEBUG Processing 366/702 atomic regions from SNP 109640 to 110240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,548 DEBUG Processing 625/719 atomic regions from SNP 187253 to 187853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:28,629 DEBUG Processing 447/673 atomic regions from SNP 134080 to 134680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:28,676 DEBUG Processing 139/656 atomic regions from SNP 41468 to 42068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,799 DEBUG Processing 367/702 atomic regions from SNP 109940 to 110540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:28,851 DEBUG Processing 626/719 atomic regions from SNP 187553 to 188153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:28,912 DEBUG Processing 140/656 atomic regions from SNP 41768 to 42368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,917 DEBUG Processing 448/673 atomic regions from SNP 134380 to 134980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,020 DEBUG Processing 368/702 atomic regions from SNP 110240 to 110840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,100 DEBUG Processing 627/719 atomic regions from SNP 187853 to 188453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:29,121 DEBUG Processing 141/656 atomic regions from SNP 42068 to 42668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,142 DEBUG Processing 449/673 atomic regions from SNP 134680 to 135280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,236 DEBUG Processing 369/702 atomic regions from SNP 110540 to 111140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,348 DEBUG Processing 142/656 atomic regions from SNP 42368 to 42968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,362 DEBUG Processing 450/673 atomic regions from SNP 134980 to 135580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,365 DEBUG Processing 628/719 atomic regions from SNP 188153 to 188753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:29,452 DEBUG Processing 370/702 atomic regions from SNP 110840 to 111440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,557 DEBUG Processing 143/656 atomic regions from SNP 42668 to 43268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,575 DEBUG Processing 451/673 atomic regions from SNP 135280 to 135880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,635 DEBUG Processing 629/719 atomic regions from SNP 188453 to 189053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:29,712 DEBUG Processing 371/702 atomic regions from SNP 111140 to 111740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:29,802 DEBUG Processing 144/656 atomic regions from SNP 42968 to 43568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,825 DEBUG Processing 452/673 atomic regions from SNP 135580 to 136180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:29,908 DEBUG Processing 630/719 atomic regions from SNP 188753 to 189353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:29,991 DEBUG Processing 372/702 atomic regions from SNP 111440 to 112040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,094 DEBUG Processing 145/656 atomic regions from SNP 43268 to 43868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,099 DEBUG Processing 453/673 atomic regions from SNP 135880 to 136480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,184 DEBUG Processing 631/719 atomic regions from SNP 189053 to 189653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:30,264 DEBUG Processing 373/702 atomic regions from SNP 111740 to 112340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,363 DEBUG Processing 146/656 atomic regions from SNP 43568 to 44168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,373 DEBUG Processing 454/673 atomic regions from SNP 136180 to 136780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,481 DEBUG Processing 632/719 atomic regions from SNP 189353 to 189953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:30,553 DEBUG Processing 374/702 atomic regions from SNP 112040 to 112640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,644 DEBUG Processing 455/673 atomic regions from SNP 136480 to 137080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,653 DEBUG Processing 147/656 atomic regions from SNP 43868 to 44468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,810 DEBUG Processing 633/719 atomic regions from SNP 189653 to 190253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:30,834 DEBUG Processing 375/702 atomic regions from SNP 112340 to 112940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:30,883 DEBUG Processing 456/673 atomic regions from SNP 136780 to 137380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:30,933 DEBUG Processing 148/656 atomic regions from SNP 44168 to 44768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,134 DEBUG Processing 634/719 atomic regions from SNP 189953 to 190553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:31,137 DEBUG Processing 376/702 atomic regions from SNP 112640 to 113240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:31,169 DEBUG Processing 457/673 atomic regions from SNP 137080 to 137680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,241 DEBUG Processing 149/656 atomic regions from SNP 44468 to 45068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,446 DEBUG Processing 377/702 atomic regions from SNP 112940 to 113540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:31,465 DEBUG Processing 635/719 atomic regions from SNP 190253 to 190853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:31,466 DEBUG Processing 458/673 atomic regions from SNP 137380 to 137980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,553 DEBUG Processing 150/656 atomic regions from SNP 44768 to 45368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,720 DEBUG Processing 378/702 atomic regions from SNP 113240 to 113840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:31,733 DEBUG Processing 459/673 atomic regions from SNP 137680 to 138280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:31,785 DEBUG Processing 636/719 atomic regions from SNP 190553 to 191153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:31,823 DEBUG Processing 151/656 atomic regions from SNP 45068 to 45668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,021 DEBUG Processing 379/702 atomic regions from SNP 113540 to 114140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:32,045 DEBUG Processing 460/673 atomic regions from SNP 137980 to 138580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,116 DEBUG Processing 152/656 atomic regions from SNP 45368 to 45968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,120 DEBUG Processing 637/719 atomic regions from SNP 190853 to 191453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:32,327 DEBUG Processing 380/702 atomic regions from SNP 113840 to 114440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:32,337 DEBUG Processing 461/673 atomic regions from SNP 138280 to 138880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,429 DEBUG Processing 153/656 atomic regions from SNP 45668 to 46268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,470 DEBUG Processing 638/719 atomic regions from SNP 191153 to 191753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:32,631 DEBUG Processing 462/673 atomic regions from SNP 138580 to 139180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,649 DEBUG Processing 381/702 atomic regions from SNP 114140 to 114740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:32,743 DEBUG Processing 154/656 atomic regions from SNP 45968 to 46568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,812 DEBUG Processing 639/719 atomic regions from SNP 191453 to 192053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:32,928 DEBUG Processing 463/673 atomic regions from SNP 138880 to 139480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:32,987 DEBUG Processing 382/702 atomic regions from SNP 114440 to 115040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,070 DEBUG Processing 155/656 atomic regions from SNP 46268 to 46868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,138 DEBUG Processing 640/719 atomic regions from SNP 191753 to 192353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:33,213 DEBUG Processing 464/673 atomic regions from SNP 139180 to 139780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:33,294 DEBUG Processing 383/702 atomic regions from SNP 114740 to 115340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,362 DEBUG Processing 156/656 atomic regions from SNP 46568 to 47168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,434 DEBUG Processing 641/719 atomic regions from SNP 192053 to 192653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:33,480 DEBUG Processing 465/673 atomic regions from SNP 139480 to 140080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:33,584 DEBUG Processing 384/702 atomic regions from SNP 115040 to 115640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,633 DEBUG Processing 157/656 atomic regions from SNP 46868 to 47468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,732 DEBUG Processing 642/719 atomic regions from SNP 192353 to 192953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:33,756 DEBUG Processing 466/673 atomic regions from SNP 139780 to 140380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:33,923 DEBUG Processing 385/702 atomic regions from SNP 115340 to 115940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:33,927 DEBUG Processing 158/656 atomic regions from SNP 47168 to 47768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,038 DEBUG Processing 643/719 atomic regions from SNP 192653 to 193253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:34,056 DEBUG Processing 467/673 atomic regions from SNP 140080 to 140680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,233 DEBUG Processing 159/656 atomic regions from SNP 47468 to 48068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,275 DEBUG Processing 386/702 atomic regions from SNP 115640 to 116240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,358 DEBUG Processing 644/719 atomic regions from SNP 192953 to 193553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:34,365 DEBUG Processing 468/673 atomic regions from SNP 140380 to 140980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,527 DEBUG Processing 160/656 atomic regions from SNP 47768 to 48368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,607 DEBUG Processing 387/702 atomic regions from SNP 115940 to 116540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,663 DEBUG Processing 469/673 atomic regions from SNP 140680 to 141280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,667 DEBUG Processing 645/719 atomic regions from SNP 193253 to 193853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:34,813 DEBUG Processing 161/656 atomic regions from SNP 48068 to 48668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,949 DEBUG Processing 470/673 atomic regions from SNP 140980 to 141580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:34,952 DEBUG Processing 388/702 atomic regions from SNP 116240 to 116840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:34,962 DEBUG Processing 646/719 atomic regions from SNP 193553 to 194153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:35,053 DEBUG Processing 162/656 atomic regions from SNP 48368 to 48968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,217 DEBUG Processing 471/673 atomic regions from SNP 141280 to 141880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,258 DEBUG Processing 647/719 atomic regions from SNP 193853 to 194453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:35,259 DEBUG Processing 389/702 atomic regions from SNP 116540 to 117140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:35,324 DEBUG Processing 163/656 atomic regions from SNP 48668 to 49268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,437 DEBUG Processing 472/673 atomic regions from SNP 141580 to 142180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,529 DEBUG Processing 648/719 atomic regions from SNP 194153 to 194753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:35,549 DEBUG Processing 390/702 atomic regions from SNP 116840 to 117440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:35,586 DEBUG Processing 164/656 atomic regions from SNP 48968 to 49568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,707 DEBUG Processing 473/673 atomic regions from SNP 141880 to 142480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:35,801 DEBUG Processing 649/719 atomic regions from SNP 194453 to 195053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:35,854 DEBUG Processing 165/656 atomic regions from SNP 49268 to 49868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,859 DEBUG Processing 391/702 atomic regions from SNP 117140 to 117740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:35,993 DEBUG Processing 474/673 atomic regions from SNP 142180 to 142780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,095 DEBUG Processing 650/719 atomic regions from SNP 194753 to 195353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:36,139 DEBUG Processing 166/656 atomic regions from SNP 49568 to 50168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,177 DEBUG Processing 392/702 atomic regions from SNP 117440 to 118040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:36,283 DEBUG Processing 475/673 atomic regions from SNP 142480 to 143080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,395 DEBUG Processing 651/719 atomic regions from SNP 195053 to 195653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:36,425 DEBUG Processing 167/656 atomic regions from SNP 49868 to 50468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,492 DEBUG Processing 393/702 atomic regions from SNP 117740 to 118340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:36,581 DEBUG Processing 476/673 atomic regions from SNP 142780 to 143380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:36,713 DEBUG Processing 652/719 atomic regions from SNP 195353 to 195953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:36,740 DEBUG Processing 168/656 atomic regions from SNP 50168 to 50768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,789 DEBUG Processing 394/702 atomic regions from SNP 118040 to 118640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:36,875 DEBUG Processing 477/673 atomic regions from SNP 143080 to 143680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,000 DEBUG Processing 653/719 atomic regions from SNP 195653 to 196253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:37,026 DEBUG Processing 169/656 atomic regions from SNP 50468 to 51068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,066 DEBUG Processing 395/702 atomic regions from SNP 118340 to 118940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,103 DEBUG Processing 478/673 atomic regions from SNP 143380 to 143980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,278 DEBUG Processing 654/719 atomic regions from SNP 195953 to 196553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:37,302 DEBUG Processing 170/656 atomic regions from SNP 50768 to 51368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,339 DEBUG Processing 396/702 atomic regions from SNP 118640 to 119240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,368 DEBUG Processing 479/673 atomic regions from SNP 143680 to 144280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,491 DEBUG Processing 655/719 atomic regions from SNP 196253 to 196853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:37,538 DEBUG Processing 171/656 atomic regions from SNP 51068 to 51668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,594 DEBUG Processing 397/702 atomic regions from SNP 118940 to 119540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,618 DEBUG Processing 480/673 atomic regions from SNP 143980 to 144580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:37,746 DEBUG Processing 656/719 atomic regions from SNP 196553 to 197153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:37,796 DEBUG Processing 172/656 atomic regions from SNP 51368 to 51968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,843 DEBUG Processing 398/702 atomic regions from SNP 119240 to 119840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:37,868 DEBUG Processing 481/673 atomic regions from SNP 144280 to 144880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,026 DEBUG Processing 657/719 atomic regions from SNP 196853 to 197453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:38,071 DEBUG Processing 173/656 atomic regions from SNP 51668 to 52268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,132 DEBUG Processing 399/702 atomic regions from SNP 119540 to 120140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,148 DEBUG Processing 482/673 atomic regions from SNP 144580 to 145180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,335 DEBUG Processing 658/719 atomic regions from SNP 197153 to 197753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:38,356 DEBUG Processing 174/656 atomic regions from SNP 51968 to 52568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,432 DEBUG Processing 483/673 atomic regions from SNP 144880 to 145480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,432 DEBUG Processing 400/702 atomic regions from SNP 119840 to 120440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,632 DEBUG Processing 659/719 atomic regions from SNP 197453 to 198053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:38,638 DEBUG Processing 175/656 atomic regions from SNP 52268 to 52868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,711 DEBUG Processing 484/673 atomic regions from SNP 145180 to 145780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,724 DEBUG Processing 401/702 atomic regions from SNP 120140 to 120740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:38,839 DEBUG Processing 176/656 atomic regions from SNP 52568 to 53168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,873 DEBUG Processing 660/719 atomic regions from SNP 197753 to 198353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:38,934 DEBUG Processing 485/673 atomic regions from SNP 145480 to 146080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:38,965 DEBUG Processing 402/702 atomic regions from SNP 120440 to 121040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,110 DEBUG Processing 177/656 atomic regions from SNP 52868 to 53468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,177 DEBUG Processing 661/719 atomic regions from SNP 198053 to 198653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:39,198 DEBUG Processing 486/673 atomic regions from SNP 145780 to 146380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,247 DEBUG Processing 403/702 atomic regions from SNP 120740 to 121340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,370 DEBUG Processing 178/656 atomic regions from SNP 53168 to 53768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,486 DEBUG Processing 487/673 atomic regions from SNP 146080 to 146680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,491 DEBUG Processing 662/719 atomic regions from SNP 198353 to 198953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:39,544 DEBUG Processing 404/702 atomic regions from SNP 121040 to 121640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,646 DEBUG Processing 179/656 atomic regions from SNP 53468 to 54068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,771 DEBUG Processing 488/673 atomic regions from SNP 146380 to 146980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:39,781 DEBUG Processing 663/719 atomic regions from SNP 198653 to 199253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:39,824 DEBUG Processing 405/702 atomic regions from SNP 121340 to 121940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:39,922 DEBUG Processing 180/656 atomic regions from SNP 53768 to 54368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,057 DEBUG Processing 489/673 atomic regions from SNP 146680 to 147280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,072 DEBUG Processing 664/719 atomic regions from SNP 198953 to 199553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:40,130 DEBUG Processing 406/702 atomic regions from SNP 121640 to 122240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:40,208 DEBUG Processing 181/656 atomic regions from SNP 54068 to 54668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,305 DEBUG Processing 490/673 atomic regions from SNP 146980 to 147580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,356 DEBUG Processing 665/719 atomic regions from SNP 199253 to 199853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:40,411 DEBUG Processing 407/702 atomic regions from SNP 121940 to 122540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:40,427 DEBUG Processing 182/656 atomic regions from SNP 54368 to 54968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,506 DEBUG Processing 491/673 atomic regions from SNP 147280 to 147880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,576 DEBUG Processing 666/719 atomic regions from SNP 199553 to 200153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:40,631 DEBUG Processing 408/702 atomic regions from SNP 122240 to 122840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:40,640 DEBUG Processing 183/656 atomic regions from SNP 54668 to 55268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,761 DEBUG Processing 492/673 atomic regions from SNP 147580 to 148180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:40,855 DEBUG Processing 667/719 atomic regions from SNP 199853 to 200453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:40,902 DEBUG Processing 184/656 atomic regions from SNP 54968 to 55568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,905 DEBUG Processing 409/702 atomic regions from SNP 122540 to 123140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,032 DEBUG Processing 493/673 atomic regions from SNP 147880 to 148480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,145 DEBUG Processing 668/719 atomic regions from SNP 200153 to 200753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:41,188 DEBUG Processing 185/656 atomic regions from SNP 55268 to 55868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,199 DEBUG Processing 410/702 atomic regions from SNP 122840 to 123440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,315 DEBUG Processing 494/673 atomic regions from SNP 148180 to 148780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,402 DEBUG Processing 669/719 atomic regions from SNP 200453 to 201053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:41,426 DEBUG Processing 186/656 atomic regions from SNP 55568 to 56168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,437 DEBUG Processing 411/702 atomic regions from SNP 123140 to 123740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,532 DEBUG Processing 495/673 atomic regions from SNP 148480 to 149080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,671 DEBUG Processing 670/719 atomic regions from SNP 200753 to 201353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:41,689 DEBUG Processing 187/656 atomic regions from SNP 55868 to 56468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,705 DEBUG Processing 412/702 atomic regions from SNP 123440 to 124040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:41,779 DEBUG Processing 496/673 atomic regions from SNP 148780 to 149380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:41,942 DEBUG Processing 671/719 atomic regions from SNP 201053 to 201653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:41,952 DEBUG Processing 188/656 atomic regions from SNP 56168 to 56768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,978 DEBUG Processing 413/702 atomic regions from SNP 123740 to 124340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,044 DEBUG Processing 497/673 atomic regions from SNP 149080 to 149680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:42,223 DEBUG Processing 189/656 atomic regions from SNP 56468 to 57068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,226 DEBUG Processing 672/719 atomic regions from SNP 201353 to 201953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:42,254 DEBUG Processing 414/702 atomic regions from SNP 124040 to 124640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,314 DEBUG Processing 498/673 atomic regions from SNP 149380 to 149980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:42,501 DEBUG Processing 190/656 atomic regions from SNP 56768 to 57368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,515 DEBUG Processing 673/719 atomic regions from SNP 201653 to 202253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:42,560 DEBUG Processing 415/702 atomic regions from SNP 124340 to 124940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,607 DEBUG Processing 499/673 atomic regions from SNP 149680 to 150280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:42,784 DEBUG Processing 191/656 atomic regions from SNP 57068 to 57668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,822 DEBUG Processing 674/719 atomic regions from SNP 201953 to 202553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:42,869 DEBUG Processing 416/702 atomic regions from SNP 124640 to 125240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:42,938 DEBUG Processing 500/673 atomic regions from SNP 149980 to 150580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,074 DEBUG Processing 192/656 atomic regions from SNP 57368 to 57968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,126 DEBUG Processing 675/719 atomic regions from SNP 202253 to 202853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:43,182 DEBUG Processing 417/702 atomic regions from SNP 124940 to 125540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:43,309 DEBUG Processing 501/673 atomic regions from SNP 150280 to 150880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,376 DEBUG Processing 193/656 atomic regions from SNP 57668 to 58268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,427 DEBUG Processing 676/719 atomic regions from SNP 202553 to 203153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:43,481 DEBUG Processing 418/702 atomic regions from SNP 125240 to 125840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:43,620 DEBUG Processing 502/673 atomic regions from SNP 150580 to 151180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:43,653 DEBUG Processing 194/656 atomic regions from SNP 57968 to 58568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,712 DEBUG Processing 677/719 atomic regions from SNP 202853 to 203453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:43,786 DEBUG Processing 419/702 atomic regions from SNP 125540 to 126140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:43,877 DEBUG Segmenting atomic regions: 2025-01-31 09:58:43,953 DEBUG Processing 1/593 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,953 DEBUG Processing 195/656 atomic regions from SNP 58268 to 58868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,957 DEBUG Processing 503/673 atomic regions from SNP 150880 to 151480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:44,003 DEBUG Processing 678/719 atomic regions from SNP 203153 to 203753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:44,141 DEBUG Processing 420/702 atomic regions from SNP 125840 to 126440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:44,316 DEBUG Processing 196/656 atomic regions from SNP 58568 to 59168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,344 DEBUG Processing 2/593 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,360 DEBUG Processing 679/719 atomic regions from SNP 203453 to 204053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:44,385 DEBUG Processing 504/673 atomic regions from SNP 151180 to 151780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:44,507 DEBUG Processing 421/702 atomic regions from SNP 126140 to 126740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:44,598 DEBUG Processing 197/656 atomic regions from SNP 58868 to 59468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,636 DEBUG Processing 3/593 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,674 DEBUG Processing 680/719 atomic regions from SNP 203753 to 204353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:44,709 DEBUG Processing 505/673 atomic regions from SNP 151480 to 152080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:44,835 DEBUG Processing 422/702 atomic regions from SNP 126440 to 127040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:44,875 DEBUG Processing 198/656 atomic regions from SNP 59168 to 59768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,919 DEBUG Processing 4/593 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,975 DEBUG Processing 681/719 atomic regions from SNP 204053 to 204653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:45,009 DEBUG Processing 506/673 atomic regions from SNP 151780 to 152380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,158 DEBUG Processing 199/656 atomic regions from SNP 59468 to 60068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,160 DEBUG Processing 423/702 atomic regions from SNP 126740 to 127340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,201 DEBUG Processing 5/593 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,278 DEBUG Processing 682/719 atomic regions from SNP 204353 to 204953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:45,313 DEBUG Processing 507/673 atomic regions from SNP 152080 to 152680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,464 DEBUG Processing 200/656 atomic regions from SNP 59768 to 60368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,480 DEBUG Processing 424/702 atomic regions from SNP 127040 to 127640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,524 DEBUG Processing 6/593 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,573 DEBUG Processing 683/719 atomic regions from SNP 204653 to 205253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:45,589 DEBUG Processing 508/673 atomic regions from SNP 152380 to 152980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,662 DEBUG Processing 201/656 atomic regions from SNP 60068 to 60668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,732 DEBUG Processing 425/702 atomic regions from SNP 127340 to 127940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:45,748 DEBUG Processing 7/593 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,845 DEBUG Processing 684/719 atomic regions from SNP 204953 to 205553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:45,865 DEBUG Processing 509/673 atomic regions from SNP 152680 to 153280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:45,883 DEBUG Processing 202/656 atomic regions from SNP 60368 to 60968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,973 DEBUG Processing 8/593 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,974 DEBUG Processing 426/702 atomic regions from SNP 127640 to 128240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,126 DEBUG Processing 685/719 atomic regions from SNP 205253 to 205853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:46,141 DEBUG Processing 203/656 atomic regions from SNP 60668 to 61268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,145 DEBUG Processing 510/673 atomic regions from SNP 152980 to 153580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,217 DEBUG Processing 9/593 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,251 DEBUG Processing 427/702 atomic regions from SNP 127940 to 128540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,411 DEBUG Processing 204/656 atomic regions from SNP 60968 to 61568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,418 DEBUG Processing 686/719 atomic regions from SNP 205553 to 206153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:46,429 DEBUG Processing 10/593 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,435 DEBUG Processing 511/673 atomic regions from SNP 153280 to 153880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,477 DEBUG Processing 428/702 atomic regions from SNP 128240 to 128840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,658 DEBUG Processing 205/656 atomic regions from SNP 61268 to 61868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,674 DEBUG Processing 11/593 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,675 DEBUG Processing 687/719 atomic regions from SNP 205853 to 206453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:46,708 DEBUG Processing 512/673 atomic regions from SNP 153580 to 154180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,733 DEBUG Processing 429/702 atomic regions from SNP 128540 to 129140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:46,856 DEBUG Processing 206/656 atomic regions from SNP 61568 to 62168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,891 DEBUG Processing 688/719 atomic regions from SNP 206153 to 206753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:46,893 DEBUG Processing 12/593 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,913 DEBUG Processing 513/673 atomic regions from SNP 153880 to 154480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:46,943 DEBUG Processing 430/702 atomic regions from SNP 128840 to 129440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,047 DEBUG Processing 207/656 atomic regions from SNP 61868 to 62468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,122 DEBUG Processing 13/593 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,132 DEBUG Processing 689/719 atomic regions from SNP 206453 to 207053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:47,149 DEBUG Processing 514/673 atomic regions from SNP 154180 to 154780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:47,165 DEBUG Processing 431/702 atomic regions from SNP 129140 to 129740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,244 DEBUG Processing 208/656 atomic regions from SNP 62168 to 62768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,347 DEBUG Processing 14/593 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,412 DEBUG Processing 690/719 atomic regions from SNP 206753 to 207353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:47,430 DEBUG Processing 515/673 atomic regions from SNP 154480 to 155080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:47,433 DEBUG Processing 432/702 atomic regions from SNP 129440 to 130040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,469 DEBUG Processing 209/656 atomic regions from SNP 62468 to 63068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,581 DEBUG Processing 15/593 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,700 DEBUG Processing 691/719 atomic regions from SNP 207053 to 207653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:47,718 DEBUG Processing 516/673 atomic regions from SNP 154780 to 155380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:47,726 DEBUG Processing 210/656 atomic regions from SNP 62768 to 63368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,733 DEBUG Processing 433/702 atomic regions from SNP 129740 to 130340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:47,827 DEBUG Processing 16/593 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,995 DEBUG Processing 692/719 atomic regions from SNP 207353 to 207953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:48,008 DEBUG Processing 517/673 atomic regions from SNP 155080 to 155680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,012 DEBUG Processing 211/656 atomic regions from SNP 63068 to 63668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,044 DEBUG Processing 434/702 atomic regions from SNP 130040 to 130640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,061 DEBUG Processing 17/593 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,230 DEBUG Processing 693/719 atomic regions from SNP 207653 to 208253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:48,237 DEBUG Processing 212/656 atomic regions from SNP 63368 to 63968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,239 DEBUG Processing 518/673 atomic regions from SNP 155380 to 155980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,284 DEBUG Processing 18/593 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,300 DEBUG Processing 435/702 atomic regions from SNP 130340 to 130940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,433 DEBUG Processing 213/656 atomic regions from SNP 63668 to 64268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,438 DEBUG Processing 519/673 atomic regions from SNP 155680 to 156280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,452 DEBUG Processing 694/719 atomic regions from SNP 207953 to 208553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:48,479 DEBUG Processing 19/593 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,540 DEBUG Processing 436/702 atomic regions from SNP 130640 to 131240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,630 DEBUG Processing 214/656 atomic regions from SNP 63968 to 64568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,637 DEBUG Processing 520/673 atomic regions from SNP 155980 to 156580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,670 DEBUG Processing 20/593 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,689 DEBUG Processing 695/719 atomic regions from SNP 208253 to 208853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:48,774 DEBUG Processing 437/702 atomic regions from SNP 130940 to 131540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:48,823 DEBUG Processing 215/656 atomic regions from SNP 64268 to 64868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,850 DEBUG Processing 521/673 atomic regions from SNP 156280 to 156880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:48,876 DEBUG Processing 21/593 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,911 DEBUG Processing 696/719 atomic regions from SNP 208553 to 209153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:49,001 DEBUG Processing 438/702 atomic regions from SNP 131240 to 131840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,013 DEBUG Processing 216/656 atomic regions from SNP 64568 to 65168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,063 DEBUG Processing 522/673 atomic regions from SNP 156580 to 157180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,084 DEBUG Processing 22/593 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,126 DEBUG Processing 697/719 atomic regions from SNP 208853 to 209453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:49,207 DEBUG Processing 217/656 atomic regions from SNP 64868 to 65468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,227 DEBUG Processing 439/702 atomic regions from SNP 131540 to 132140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,264 DEBUG Processing 523/673 atomic regions from SNP 156880 to 157480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,292 DEBUG Processing 23/593 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,359 DEBUG Processing 698/719 atomic regions from SNP 209153 to 209753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:49,403 DEBUG Processing 218/656 atomic regions from SNP 65168 to 65768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,431 DEBUG Processing 440/702 atomic regions from SNP 131840 to 132440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,469 DEBUG Processing 524/673 atomic regions from SNP 157180 to 157780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,497 DEBUG Processing 24/593 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,578 DEBUG Processing 699/719 atomic regions from SNP 209453 to 210053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:49,597 DEBUG Processing 219/656 atomic regions from SNP 65468 to 66068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,647 DEBUG Processing 441/702 atomic regions from SNP 132140 to 132740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,677 DEBUG Processing 525/673 atomic regions from SNP 157480 to 158080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,698 DEBUG Processing 25/593 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,793 DEBUG Processing 220/656 atomic regions from SNP 65768 to 66368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,799 DEBUG Processing 700/719 atomic regions from SNP 209753 to 210353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:49,871 DEBUG Processing 442/702 atomic regions from SNP 132440 to 133040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:49,873 DEBUG Processing 526/673 atomic regions from SNP 157780 to 158380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:49,891 DEBUG Processing 26/593 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,988 DEBUG Processing 221/656 atomic regions from SNP 66068 to 66668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,018 DEBUG Processing 701/719 atomic regions from SNP 210053 to 210653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:50,080 DEBUG Processing 27/593 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,083 DEBUG Processing 443/702 atomic regions from SNP 132740 to 133340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,085 DEBUG Processing 527/673 atomic regions from SNP 158080 to 158680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,181 DEBUG Processing 222/656 atomic regions from SNP 66368 to 66968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,242 DEBUG Processing 702/719 atomic regions from SNP 210353 to 210953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:50,282 DEBUG Processing 28/593 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,283 DEBUG Processing 444/702 atomic regions from SNP 133040 to 133640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,308 DEBUG Processing 528/673 atomic regions from SNP 158380 to 158980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,372 DEBUG Processing 223/656 atomic regions from SNP 66668 to 67268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,481 DEBUG Processing 703/719 atomic regions from SNP 210653 to 211253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:50,482 DEBUG Processing 445/702 atomic regions from SNP 133340 to 133940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,490 DEBUG Processing 29/593 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,532 DEBUG Processing 529/673 atomic regions from SNP 158680 to 159280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,563 DEBUG Processing 224/656 atomic regions from SNP 66968 to 67568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,697 DEBUG Processing 30/593 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,700 DEBUG Processing 704/719 atomic regions from SNP 210953 to 211553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:50,708 DEBUG Processing 446/702 atomic regions from SNP 133640 to 134240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,741 DEBUG Processing 530/673 atomic regions from SNP 158980 to 159580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,753 DEBUG Processing 225/656 atomic regions from SNP 67268 to 67868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,922 DEBUG Processing 31/593 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,943 DEBUG Processing 447/702 atomic regions from SNP 133940 to 134540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:50,944 DEBUG Processing 705/719 atomic regions from SNP 211253 to 211853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:50,947 DEBUG Processing 531/673 atomic regions from SNP 159280 to 159880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:50,955 DEBUG Processing 226/656 atomic regions from SNP 67568 to 68168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,132 DEBUG Processing 32/593 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,142 DEBUG Processing 532/673 atomic regions from SNP 159580 to 160180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,151 DEBUG Processing 227/656 atomic regions from SNP 67868 to 68468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,165 DEBUG Processing 448/702 atomic regions from SNP 134240 to 134840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,182 DEBUG Processing 706/719 atomic regions from SNP 211553 to 212153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:51,334 DEBUG Processing 533/673 atomic regions from SNP 159880 to 160480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,340 DEBUG Processing 228/656 atomic regions from SNP 68168 to 68768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,342 DEBUG Processing 33/593 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,381 DEBUG Processing 449/702 atomic regions from SNP 134540 to 135140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,406 DEBUG Processing 707/719 atomic regions from SNP 211853 to 212453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:51,531 DEBUG Processing 534/673 atomic regions from SNP 160180 to 160780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,532 DEBUG Processing 229/656 atomic regions from SNP 68468 to 69068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,555 DEBUG Processing 34/593 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,588 DEBUG Processing 450/702 atomic regions from SNP 134840 to 135440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,617 DEBUG Processing 708/719 atomic regions from SNP 212153 to 212753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:51,723 DEBUG Processing 230/656 atomic regions from SNP 68768 to 69368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,738 DEBUG Processing 535/673 atomic regions from SNP 160480 to 161080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,763 DEBUG Processing 35/593 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,798 DEBUG Processing 451/702 atomic regions from SNP 135140 to 135740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:51,841 DEBUG Processing 709/719 atomic regions from SNP 212453 to 213053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:51,912 DEBUG Processing 231/656 atomic regions from SNP 69068 to 69668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:51,936 DEBUG Processing 536/673 atomic regions from SNP 160780 to 161380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:51,968 DEBUG Processing 36/593 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,995 DEBUG Processing 452/702 atomic regions from SNP 135440 to 136040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,047 DEBUG Processing 710/719 atomic regions from SNP 212753 to 213353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:52,101 DEBUG Processing 232/656 atomic regions from SNP 69368 to 69968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,147 DEBUG Processing 537/673 atomic regions from SNP 161080 to 161680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,170 DEBUG Processing 37/593 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,192 DEBUG Processing 453/702 atomic regions from SNP 135740 to 136340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,249 DEBUG Processing 711/719 atomic regions from SNP 213053 to 213653 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:52,293 DEBUG Processing 233/656 atomic regions from SNP 69668 to 70268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,391 DEBUG Processing 538/673 atomic regions from SNP 161380 to 161980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,400 DEBUG Processing 38/593 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,423 DEBUG Processing 454/702 atomic regions from SNP 136040 to 136640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,500 DEBUG Processing 712/719 atomic regions from SNP 213353 to 213953 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:52,512 DEBUG Processing 234/656 atomic regions from SNP 69968 to 70568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,652 DEBUG Processing 39/593 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,657 DEBUG Processing 539/673 atomic regions from SNP 161680 to 162280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,678 DEBUG Processing 455/702 atomic regions from SNP 136340 to 136940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,757 DEBUG Processing 235/656 atomic regions from SNP 70268 to 70868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:52,770 DEBUG Processing 713/719 atomic regions from SNP 213653 to 214253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:52,844 DEBUG Processing 40/593 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,872 DEBUG Processing 540/673 atomic regions from SNP 161980 to 162580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:52,880 DEBUG Processing 456/702 atomic regions from SNP 136640 to 137240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:52,953 DEBUG Processing 236/656 atomic regions from SNP 70568 to 71168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,000 DEBUG Processing 714/719 atomic regions from SNP 213953 to 214553 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:53,023 DEBUG Processing 41/593 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,078 DEBUG Processing 457/702 atomic regions from SNP 136940 to 137540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,082 DEBUG Processing 541/673 atomic regions from SNP 162280 to 162880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,143 DEBUG Processing 237/656 atomic regions from SNP 70868 to 71468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,206 DEBUG Processing 42/593 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,225 DEBUG Processing 715/719 atomic regions from SNP 214253 to 214853 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:53,295 DEBUG Processing 458/702 atomic regions from SNP 137240 to 137840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,303 DEBUG Processing 542/673 atomic regions from SNP 162580 to 163180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,343 DEBUG Processing 238/656 atomic regions from SNP 71168 to 71768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,416 DEBUG Processing 43/593 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,479 DEBUG Processing 716/719 atomic regions from SNP 214553 to 215153 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:53,509 DEBUG Processing 459/702 atomic regions from SNP 137540 to 138140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,521 DEBUG Processing 543/673 atomic regions from SNP 162880 to 163480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,532 DEBUG Processing 239/656 atomic regions from SNP 71468 to 72068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,625 DEBUG Processing 44/593 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,680 DEBUG Processing 717/719 atomic regions from SNP 214853 to 215453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:53,730 DEBUG Processing 460/702 atomic regions from SNP 137840 to 138440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,738 DEBUG Processing 240/656 atomic regions from SNP 71768 to 72368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:53,762 DEBUG Processing 544/673 atomic regions from SNP 163180 to 163780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:53,851 DEBUG Processing 45/593 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,921 DEBUG Processing 718/719 atomic regions from SNP 215153 to 215753 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:53,965 DEBUG Processing 461/702 atomic regions from SNP 138140 to 138740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:53,969 DEBUG Processing 241/656 atomic regions from SNP 72068 to 72668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,043 DEBUG Processing 545/673 atomic regions from SNP 163480 to 164080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,105 DEBUG Processing 46/593 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,195 DEBUG Processing 719/719 atomic regions from SNP 215453 to 216053 for chr9 (subchromosome 1 of 1). 2025-01-31 09:58:54,213 DEBUG Processing 462/702 atomic regions from SNP 138440 to 139040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:54,215 DEBUG Processing 242/656 atomic regions from SNP 72368 to 72968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,289 DEBUG Processing 546/673 atomic regions from SNP 163780 to 164380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,318 DEBUG Processing 47/593 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,369 DEBUG Unique SNPs positions in subchromosome 1: 216054 2025-01-31 09:58:54,457 DEBUG Processing 243/656 atomic regions from SNP 72668 to 73268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,461 DEBUG Processing 463/702 atomic regions from SNP 138740 to 139340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:54,548 DEBUG Processing 547/673 atomic regions from SNP 164080 to 164680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,561 DEBUG Processing 48/593 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,698 DEBUG Processing 244/656 atomic regions from SNP 72968 to 73568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,715 DEBUG Processing 464/702 atomic regions from SNP 139040 to 139640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:54,812 DEBUG Processing 548/673 atomic regions from SNP 164380 to 164980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:54,826 DEBUG Processing 49/593 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,887 DEBUG Processing 245/656 atomic regions from SNP 73268 to 73868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:54,936 DEBUG Processing 465/702 atomic regions from SNP 139340 to 139940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,031 DEBUG Processing 50/593 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,043 DEBUG Processing 549/673 atomic regions from SNP 164680 to 165280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,088 DEBUG Processing 246/656 atomic regions from SNP 73568 to 74168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,162 DEBUG Processing 466/702 atomic regions from SNP 139640 to 140240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,211 DEBUG Processing 51/593 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,270 DEBUG Processing 550/673 atomic regions from SNP 164980 to 165580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,274 DEBUG Processing 247/656 atomic regions from SNP 73868 to 74468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,362 DEBUG Processing 467/702 atomic regions from SNP 139940 to 140540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,406 DEBUG Processing 52/593 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,460 DEBUG Processing 248/656 atomic regions from SNP 74168 to 74768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,489 DEBUG Processing 551/673 atomic regions from SNP 165280 to 165880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,579 DEBUG Processing 468/702 atomic regions from SNP 140240 to 140840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,615 DEBUG Processing 53/593 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,648 DEBUG Processing 249/656 atomic regions from SNP 74468 to 75068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,709 DEBUG Processing 552/673 atomic regions from SNP 165580 to 166180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,788 DEBUG Processing 469/702 atomic regions from SNP 140540 to 141140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:55,826 DEBUG Processing 54/593 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,835 DEBUG Processing 250/656 atomic regions from SNP 74768 to 75368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:55,912 DEBUG Processing 553/673 atomic regions from SNP 165880 to 166480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:55,985 DEBUG Processing 470/702 atomic regions from SNP 140840 to 141440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,023 DEBUG Processing 251/656 atomic regions from SNP 75068 to 75668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,036 DEBUG Processing 55/593 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,103 DEBUG Processing 554/673 atomic regions from SNP 166180 to 166780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,183 DEBUG Processing 471/702 atomic regions from SNP 141140 to 141740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,209 DEBUG Processing 252/656 atomic regions from SNP 75368 to 75968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,249 DEBUG Processing 56/593 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,296 DEBUG Processing 555/673 atomic regions from SNP 166480 to 167080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,382 DEBUG Processing 472/702 atomic regions from SNP 141440 to 142040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,397 DEBUG Processing 253/656 atomic regions from SNP 75668 to 76268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,464 DEBUG Processing 57/593 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,495 DEBUG Processing 556/673 atomic regions from SNP 166780 to 167380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,585 DEBUG Processing 254/656 atomic regions from SNP 75968 to 76568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,594 DEBUG Processing 473/702 atomic regions from SNP 141740 to 142340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,676 DEBUG Processing 58/593 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,706 DEBUG Processing 557/673 atomic regions from SNP 167080 to 167680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,773 DEBUG Processing 255/656 atomic regions from SNP 76268 to 76868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,792 DEBUG Processing 474/702 atomic regions from SNP 142040 to 142640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:56,889 DEBUG Processing 59/593 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,904 DEBUG Processing 558/673 atomic regions from SNP 167380 to 167980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:56,962 DEBUG Processing 256/656 atomic regions from SNP 76568 to 77168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:56,994 DEBUG Processing 475/702 atomic regions from SNP 142340 to 142940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,087 DEBUG Processing 60/593 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,115 DEBUG Processing 559/673 atomic regions from SNP 167680 to 168280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,172 DEBUG Processing 257/656 atomic regions from SNP 76868 to 77468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,214 DEBUG Processing 476/702 atomic regions from SNP 142640 to 143240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,277 DEBUG Processing 61/593 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,341 DEBUG Processing 560/673 atomic regions from SNP 167980 to 168580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,388 DEBUG Processing 258/656 atomic regions from SNP 77168 to 77768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,444 DEBUG Processing 477/702 atomic regions from SNP 142940 to 143540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,454 DEBUG Processing 62/593 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,561 DEBUG Processing 561/673 atomic regions from SNP 168280 to 168880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,605 DEBUG Processing 259/656 atomic regions from SNP 77468 to 78068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,631 DEBUG Processing 63/593 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,671 DEBUG Processing 478/702 atomic regions from SNP 143240 to 143840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,755 DEBUG Processing 562/673 atomic regions from SNP 168580 to 169180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,809 DEBUG Processing 64/593 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,818 DEBUG Processing 260/656 atomic regions from SNP 77768 to 78368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:57,870 DEBUG Processing 479/702 atomic regions from SNP 143540 to 144140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:57,948 DEBUG Processing 563/673 atomic regions from SNP 168880 to 169480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:57,988 DEBUG Processing 65/593 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,003 DEBUG Processing 261/656 atomic regions from SNP 78068 to 78668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,085 DEBUG Processing 480/702 atomic regions from SNP 143840 to 144440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,142 DEBUG Processing 564/673 atomic regions from SNP 169180 to 169780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,166 DEBUG Processing 66/593 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,192 DEBUG Processing 262/656 atomic regions from SNP 78368 to 78968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,305 DEBUG Processing 481/702 atomic regions from SNP 144140 to 144740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,335 DEBUG Processing 565/673 atomic regions from SNP 169480 to 170080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,346 DEBUG Processing 67/593 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,394 DEBUG Processing 263/656 atomic regions from SNP 78668 to 79268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,502 DEBUG Processing 482/702 atomic regions from SNP 144440 to 145040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,527 DEBUG Processing 68/593 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,550 DEBUG Processing 566/673 atomic regions from SNP 169780 to 170380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,608 DEBUG Processing 264/656 atomic regions from SNP 78968 to 79568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,707 DEBUG Processing 69/593 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,728 DEBUG Processing 483/702 atomic regions from SNP 144740 to 145340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,767 DEBUG Processing 567/673 atomic regions from SNP 170080 to 170680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,797 DEBUG Processing 265/656 atomic regions from SNP 79268 to 79868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:58,882 DEBUG Processing 70/593 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,953 DEBUG Processing 484/702 atomic regions from SNP 145040 to 145640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:58,960 DEBUG Processing 568/673 atomic regions from SNP 170380 to 170980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:58,985 DEBUG Processing 266/656 atomic regions from SNP 79568 to 80168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,057 DEBUG Processing 71/593 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,153 DEBUG Processing 485/702 atomic regions from SNP 145340 to 145940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,168 DEBUG Processing 569/673 atomic regions from SNP 170680 to 171280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,180 DEBUG Processing 267/656 atomic regions from SNP 79868 to 80468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,233 DEBUG Processing 72/593 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,351 DEBUG Processing 486/702 atomic regions from SNP 145640 to 146240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,363 DEBUG Processing 570/673 atomic regions from SNP 170980 to 171580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,368 DEBUG Processing 268/656 atomic regions from SNP 80168 to 80768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,409 DEBUG Processing 73/593 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,551 DEBUG Processing 487/702 atomic regions from SNP 145940 to 146540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,565 DEBUG Processing 269/656 atomic regions from SNP 80468 to 81068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,567 DEBUG Processing 571/673 atomic regions from SNP 171280 to 171880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,595 DEBUG Processing 74/593 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,760 DEBUG Processing 270/656 atomic regions from SNP 80768 to 81368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,772 DEBUG Processing 488/702 atomic regions from SNP 146240 to 146840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:58:59,779 DEBUG Processing 75/593 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,789 DEBUG Processing 572/673 atomic regions from SNP 171580 to 172180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,949 DEBUG Processing 271/656 atomic regions from SNP 81068 to 81668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:59,958 DEBUG Processing 76/593 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,983 DEBUG Processing 573/673 atomic regions from SNP 171880 to 172480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:59,984 DEBUG Processing 489/702 atomic regions from SNP 146540 to 147140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,138 DEBUG Processing 272/656 atomic regions from SNP 81368 to 81968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,138 DEBUG Processing 77/593 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,178 DEBUG Processing 574/673 atomic regions from SNP 172180 to 172780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,191 DEBUG Processing 490/702 atomic regions from SNP 146840 to 147440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,319 DEBUG Processing 78/593 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,349 DEBUG Processing 273/656 atomic regions from SNP 81668 to 82268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,372 DEBUG Processing 575/673 atomic regions from SNP 172480 to 173080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,402 DEBUG Processing 491/702 atomic regions from SNP 147140 to 147740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,500 DEBUG Processing 79/593 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,544 DEBUG Processing 274/656 atomic regions from SNP 81968 to 82568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,564 DEBUG Processing 576/673 atomic regions from SNP 172780 to 173380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,602 DEBUG Processing 492/702 atomic regions from SNP 147440 to 148040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,677 DEBUG Processing 80/593 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,740 DEBUG Processing 275/656 atomic regions from SNP 82268 to 82868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,760 DEBUG Processing 577/673 atomic regions from SNP 173080 to 173680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:00,820 DEBUG Processing 493/702 atomic regions from SNP 147740 to 148340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:00,854 DEBUG Processing 81/593 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,957 DEBUG Processing 276/656 atomic regions from SNP 82568 to 83168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:00,971 DEBUG Processing 578/673 atomic regions from SNP 173380 to 173980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,032 DEBUG Processing 82/593 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,048 DEBUG Processing 494/702 atomic regions from SNP 148040 to 148640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,175 DEBUG Processing 277/656 atomic regions from SNP 82868 to 83468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,199 DEBUG Processing 579/673 atomic regions from SNP 173680 to 174280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,227 DEBUG Processing 83/593 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,311 DEBUG Processing 495/702 atomic regions from SNP 148340 to 148940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,399 DEBUG Processing 278/656 atomic regions from SNP 83168 to 83768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,411 DEBUG Processing 84/593 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,427 DEBUG Processing 580/673 atomic regions from SNP 173980 to 174580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,595 DEBUG Processing 496/702 atomic regions from SNP 148640 to 149240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,656 DEBUG Processing 85/593 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,679 DEBUG Processing 279/656 atomic regions from SNP 83468 to 84068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:01,716 DEBUG Processing 581/673 atomic regions from SNP 174280 to 174880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:01,885 DEBUG Processing 497/702 atomic regions from SNP 148940 to 149540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:01,907 DEBUG Processing 86/593 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,986 DEBUG Processing 280/656 atomic regions from SNP 83768 to 84368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,013 DEBUG Processing 582/673 atomic regions from SNP 174580 to 175180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,187 DEBUG Processing 87/593 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,196 DEBUG Processing 498/702 atomic regions from SNP 149240 to 149840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,283 DEBUG Processing 281/656 atomic regions from SNP 84068 to 84668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,320 DEBUG Processing 583/673 atomic regions from SNP 174880 to 175480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,410 DEBUG Processing 88/593 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,451 DEBUG Processing 499/702 atomic regions from SNP 149540 to 150140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,523 DEBUG Processing 282/656 atomic regions from SNP 84368 to 84968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,524 DEBUG Processing 584/673 atomic regions from SNP 175180 to 175780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,593 DEBUG Processing 89/593 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,658 DEBUG Processing 500/702 atomic regions from SNP 149840 to 150440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,717 DEBUG Processing 283/656 atomic regions from SNP 84668 to 85268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,723 DEBUG Processing 585/673 atomic regions from SNP 175480 to 176080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,771 DEBUG Processing 90/593 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,858 DEBUG Processing 501/702 atomic regions from SNP 150140 to 150740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:02,907 DEBUG Processing 284/656 atomic regions from SNP 84968 to 85568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:02,916 DEBUG Processing 586/673 atomic regions from SNP 175780 to 176380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:02,946 DEBUG Processing 91/593 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,081 DEBUG Processing 502/702 atomic regions from SNP 150440 to 151040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,099 DEBUG Processing 285/656 atomic regions from SNP 85268 to 85868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,114 DEBUG Processing 587/673 atomic regions from SNP 176080 to 176680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,130 DEBUG Processing 92/593 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,304 DEBUG Processing 286/656 atomic regions from SNP 85568 to 86168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,309 DEBUG Processing 503/702 atomic regions from SNP 150740 to 151340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,317 DEBUG Processing 588/673 atomic regions from SNP 176380 to 176980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,318 DEBUG Processing 93/593 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,498 DEBUG Processing 287/656 atomic regions from SNP 85868 to 86468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,506 DEBUG Processing 94/593 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,519 DEBUG Processing 589/673 atomic regions from SNP 176680 to 177280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,528 DEBUG Processing 504/702 atomic regions from SNP 151040 to 151640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,699 DEBUG Processing 95/593 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,702 DEBUG Processing 288/656 atomic regions from SNP 86168 to 86768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,728 DEBUG Processing 590/673 atomic regions from SNP 176980 to 177580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:03,752 DEBUG Processing 505/702 atomic regions from SNP 151340 to 151940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:03,935 DEBUG Processing 96/593 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,952 DEBUG Processing 289/656 atomic regions from SNP 86468 to 87068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:03,982 DEBUG Processing 591/673 atomic regions from SNP 177280 to 177880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,032 DEBUG Processing 506/702 atomic regions from SNP 151640 to 152240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,179 DEBUG Processing 97/593 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,220 DEBUG Processing 290/656 atomic regions from SNP 86768 to 87368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,266 DEBUG Processing 592/673 atomic regions from SNP 177580 to 178180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,334 DEBUG Processing 507/702 atomic regions from SNP 151940 to 152540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,432 DEBUG Processing 98/593 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,465 DEBUG Processing 291/656 atomic regions from SNP 87068 to 87668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,536 DEBUG Processing 593/673 atomic regions from SNP 177880 to 178480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,594 DEBUG Processing 508/702 atomic regions from SNP 152240 to 152840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,636 DEBUG Processing 99/593 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,679 DEBUG Processing 292/656 atomic regions from SNP 87368 to 87968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:04,782 DEBUG Processing 594/673 atomic regions from SNP 178180 to 178780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:04,839 DEBUG Processing 509/702 atomic regions from SNP 152540 to 153140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:04,845 DEBUG Processing 100/593 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,873 DEBUG Processing 293/656 atomic regions from SNP 87668 to 88268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,012 DEBUG Processing 595/673 atomic regions from SNP 178480 to 179080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,091 DEBUG Processing 101/593 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,107 DEBUG Processing 510/702 atomic regions from SNP 152840 to 153440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,127 DEBUG Processing 294/656 atomic regions from SNP 87968 to 88568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,248 DEBUG Processing 596/673 atomic regions from SNP 178780 to 179380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,335 DEBUG Processing 102/593 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,376 DEBUG Processing 511/702 atomic regions from SNP 153140 to 153740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,383 DEBUG Processing 295/656 atomic regions from SNP 88268 to 88868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,505 DEBUG Processing 597/673 atomic regions from SNP 179080 to 179680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,601 DEBUG Processing 103/593 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,631 DEBUG Processing 296/656 atomic regions from SNP 88568 to 89168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,636 DEBUG Processing 512/702 atomic regions from SNP 153440 to 154040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,782 DEBUG Processing 598/673 atomic regions from SNP 179380 to 179980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:05,836 DEBUG Processing 104/593 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:05,872 DEBUG Processing 297/656 atomic regions from SNP 88868 to 89468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:05,884 DEBUG Processing 513/702 atomic regions from SNP 153740 to 154340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:05,995 DEBUG Processing 599/673 atomic regions from SNP 179680 to 180280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,061 DEBUG Processing 105/593 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,117 DEBUG Processing 298/656 atomic regions from SNP 89168 to 89768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,138 DEBUG Processing 514/702 atomic regions from SNP 154040 to 154640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,234 DEBUG Processing 600/673 atomic regions from SNP 179980 to 180580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,270 DEBUG Processing 106/593 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,351 DEBUG Processing 299/656 atomic regions from SNP 89468 to 90068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,401 DEBUG Processing 515/702 atomic regions from SNP 154340 to 154940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,476 DEBUG Processing 107/593 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,477 DEBUG Processing 601/673 atomic regions from SNP 180280 to 180880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,550 DEBUG Processing 300/656 atomic regions from SNP 89768 to 90368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,612 DEBUG Processing 516/702 atomic regions from SNP 154640 to 155240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,657 DEBUG Processing 108/593 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,675 DEBUG Processing 602/673 atomic regions from SNP 180580 to 181180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:06,776 DEBUG Processing 301/656 atomic regions from SNP 90068 to 90668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:06,829 DEBUG Processing 517/702 atomic regions from SNP 154940 to 155540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:06,856 DEBUG Processing 109/593 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:06,884 DEBUG Processing 603/673 atomic regions from SNP 180880 to 181480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,006 DEBUG Processing 302/656 atomic regions from SNP 90368 to 90968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,044 DEBUG Processing 518/702 atomic regions from SNP 155240 to 155840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,056 DEBUG Processing 110/593 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,093 DEBUG Processing 604/673 atomic regions from SNP 181180 to 181780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,200 DEBUG Processing 303/656 atomic regions from SNP 90668 to 91268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,238 DEBUG Processing 111/593 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,254 DEBUG Processing 519/702 atomic regions from SNP 155540 to 156140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,308 DEBUG Processing 605/673 atomic regions from SNP 181480 to 182080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,387 DEBUG Processing 304/656 atomic regions from SNP 90968 to 91568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,414 DEBUG Processing 112/593 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,461 DEBUG Processing 520/702 atomic regions from SNP 155840 to 156440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,516 DEBUG Processing 606/673 atomic regions from SNP 181780 to 182380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,576 DEBUG Processing 305/656 atomic regions from SNP 91268 to 91868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,590 DEBUG Processing 113/593 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,667 DEBUG Processing 521/702 atomic regions from SNP 156140 to 156740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,706 DEBUG Processing 607/673 atomic regions from SNP 182080 to 182680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,768 DEBUG Processing 114/593 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,780 DEBUG Processing 306/656 atomic regions from SNP 91568 to 92168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:07,876 DEBUG Processing 522/702 atomic regions from SNP 156440 to 157040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:07,897 DEBUG Processing 608/673 atomic regions from SNP 182380 to 182980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:07,944 DEBUG Processing 115/593 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:07,972 DEBUG Processing 307/656 atomic regions from SNP 91868 to 92468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,079 DEBUG Processing 523/702 atomic regions from SNP 156740 to 157340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,090 DEBUG Processing 609/673 atomic regions from SNP 182680 to 183280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,119 DEBUG Processing 116/593 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,164 DEBUG Processing 308/656 atomic regions from SNP 92168 to 92768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,287 DEBUG Processing 610/673 atomic regions from SNP 182980 to 183580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,291 DEBUG Processing 524/702 atomic regions from SNP 157040 to 157640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,297 DEBUG Processing 117/593 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,357 DEBUG Processing 309/656 atomic regions from SNP 92468 to 93068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,475 DEBUG Processing 118/593 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,480 DEBUG Processing 611/673 atomic regions from SNP 183280 to 183880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,500 DEBUG Processing 525/702 atomic regions from SNP 157340 to 157940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,552 DEBUG Processing 310/656 atomic regions from SNP 92768 to 93368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,657 DEBUG Processing 119/593 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,672 DEBUG Processing 612/673 atomic regions from SNP 183580 to 184180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,701 DEBUG Processing 526/702 atomic regions from SNP 157640 to 158240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,744 DEBUG Processing 311/656 atomic regions from SNP 93068 to 93668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:08,834 DEBUG Processing 120/593 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:08,876 DEBUG Processing 613/673 atomic regions from SNP 183880 to 184480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:08,903 DEBUG Processing 527/702 atomic regions from SNP 157940 to 158540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:08,937 DEBUG Processing 312/656 atomic regions from SNP 93368 to 93968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,008 DEBUG Processing 121/593 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,096 DEBUG Processing 614/673 atomic regions from SNP 184180 to 184780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,106 DEBUG Processing 528/702 atomic regions from SNP 158240 to 158840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,126 DEBUG Processing 313/656 atomic regions from SNP 93668 to 94268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,183 DEBUG Processing 122/593 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,308 DEBUG Processing 529/702 atomic regions from SNP 158540 to 159140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,320 DEBUG Processing 314/656 atomic regions from SNP 93968 to 94568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,326 DEBUG Processing 615/673 atomic regions from SNP 184480 to 185080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,359 DEBUG Processing 123/593 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,508 DEBUG Processing 530/702 atomic regions from SNP 158840 to 159440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,511 DEBUG Processing 315/656 atomic regions from SNP 94268 to 94868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,516 DEBUG Subchromosome time: 223.85560662671924, subchromosome SNPs: 216054 2025-01-31 09:59:09,516 DEBUG Estimated BADs: [0.64, 1.93, 0.48, 9.67, 1.93, 0.97, 1.93, 0.64, 3.87, 0.97, 0.28, 0.97, 15.47, 1.93, 5.80, 1.93, 5.80, 1.93, 5.80, 1.93, 3.87, 0.97, 3.87, 0.39, 1.93, 3.87, 0.97, 0.39, 1.93, 5.80, 0.64, 7.74, 0.97, 5.80, 1.93, 3.87] SNP counts: [16851, 6378, 5911, 3407, 3667, 11729, 3493, 3664, 1145, 3436, 3756, 1372, 101, 4350, 5354, 19483, 6150, 2886, 9916, 7476, 5318, 3247, 1555, 1488, 1732, 1560, 19033, 7060, 21458, 1450, 564, 3467, 1085, 1713, 15607, 9192] SNP IDs counts: [16851, 6378, 5911, 3407, 3667, 11729, 3493, 3664, 1145, 3436, 3756, 1372, 101, 4350, 5354, 19483, 6150, 2886, 9916, 7476, 5318, 3247, 1555, 1488, 1732, 1560, 19033, 7060, 21458, 1450, 564, 3467, 1085, 1713, 15607, 9192] Critical gap: 600356bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.30Mbp, 16.89Mbp, 20.63Mbp, 22.45Mbp, 24.52Mbp, 31.03Mbp, 32.91Mbp, 34.98Mbp, 35.62Mbp, 37.68Mbp, 40.00Mbp, 40.76Mbp, 40.81Mbp, 43.10Mbp, 45.90Mbp, 56.50Mbp, 59.75Mbp, 61.28Mbp, 66.50Mbp, 70.50Mbp, 73.39Mbp, 75.24Mbp, 76.08Mbp, 76.94Mbp, 77.91Mbp, 78.83Mbp, 90.29Mbp, 94.53Mbp, 106.15Mbp, 106.92Mbp, 107.25Mbp, 109.12Mbp, 109.86Mbp, 110.76Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:59:09,516 DEBUG chr9 time: 223.85605346783996 s 2025-01-31 09:59:09,531 DEBUG Processing 616/673 atomic regions from SNP 184780 to 185380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,538 DEBUG Processing 124/593 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,636 DEBUG chr9: Fitting background model for 36 segments 2025-01-31 09:59:09,706 DEBUG Processing 316/656 atomic regions from SNP 94568 to 95168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,712 DEBUG Processing 531/702 atomic regions from SNP 159140 to 159740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,720 DEBUG Processing 125/593 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,732 DEBUG Processing 617/673 atomic regions from SNP 185080 to 185680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:09,902 DEBUG Processing 126/593 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:09,906 DEBUG Processing 317/656 atomic regions from SNP 94868 to 95468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:09,926 DEBUG Processing 532/702 atomic regions from SNP 159440 to 160040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:09,931 DEBUG Processing 618/673 atomic regions from SNP 185380 to 185980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,092 DEBUG Processing 127/593 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,108 DEBUG Processing 318/656 atomic regions from SNP 95168 to 95768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,140 DEBUG Processing 619/673 atomic regions from SNP 185680 to 186280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,153 DEBUG Processing 533/702 atomic regions from SNP 159740 to 160340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,269 DEBUG Processing 128/593 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,303 DEBUG Processing 319/656 atomic regions from SNP 95468 to 96068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,337 DEBUG Processing 620/673 atomic regions from SNP 185980 to 186580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,388 DEBUG Processing 534/702 atomic regions from SNP 160040 to 160640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,446 DEBUG Processing 129/593 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,494 DEBUG Processing 320/656 atomic regions from SNP 95768 to 96368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,533 DEBUG Processing 621/673 atomic regions from SNP 186280 to 186880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,616 DEBUG Processing 535/702 atomic regions from SNP 160340 to 160940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,622 DEBUG Processing 130/593 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,681 DEBUG Processing 321/656 atomic regions from SNP 96068 to 96668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,725 DEBUG Processing 622/673 atomic regions from SNP 186580 to 187180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,797 DEBUG Processing 131/593 atomic regions from SNP 39130 to 39731 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:10,834 DEBUG Processing 536/702 atomic regions from SNP 160640 to 161240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:10,871 DEBUG Processing 322/656 atomic regions from SNP 96368 to 96968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:10,919 DEBUG Processing 623/673 atomic regions from SNP 186880 to 187480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:10,973 DEBUG Processing 132/593 atomic regions from SNP 39431 to 40032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,043 DEBUG Processing 537/702 atomic regions from SNP 160940 to 161540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,070 DEBUG Processing 323/656 atomic regions from SNP 96668 to 97268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,127 DEBUG Processing 624/673 atomic regions from SNP 187180 to 187780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,181 DEBUG Processing 133/593 atomic regions from SNP 39732 to 40332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,269 DEBUG Processing 324/656 atomic regions from SNP 96968 to 97568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,279 DEBUG Processing 538/702 atomic regions from SNP 161240 to 161840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,346 DEBUG Processing 625/673 atomic regions from SNP 187480 to 188080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,377 DEBUG Processing 134/593 atomic regions from SNP 40032 to 40632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,468 DEBUG Processing 325/656 atomic regions from SNP 97268 to 97868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,488 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:59:11,516 DEBUG Processing 539/702 atomic regions from SNP 161540 to 162140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,554 DEBUG Processing 135/593 atomic regions from SNP 40332 to 40932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,579 DEBUG Processing 626/673 atomic regions from SNP 187780 to 188380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,663 DEBUG Processing 326/656 atomic regions from SNP 97568 to 98168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,734 DEBUG Processing 136/593 atomic regions from SNP 40632 to 41232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,752 DEBUG Processing 540/702 atomic regions from SNP 161840 to 162440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:11,815 DEBUG Processing 627/673 atomic regions from SNP 188080 to 188680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:11,860 DEBUG Processing 327/656 atomic regions from SNP 97868 to 98468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:11,916 DEBUG Processing 137/593 atomic regions from SNP 40932 to 41532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:11,990 DEBUG Processing 541/702 atomic regions from SNP 162140 to 162740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,035 DEBUG Processing 628/673 atomic regions from SNP 188380 to 188980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,056 DEBUG Processing 328/656 atomic regions from SNP 98168 to 98768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,093 DEBUG Processing 138/593 atomic regions from SNP 41232 to 41832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,228 DEBUG Processing 542/702 atomic regions from SNP 162440 to 163040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,256 DEBUG Processing 629/673 atomic regions from SNP 188680 to 189280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,263 DEBUG Processing 329/656 atomic regions from SNP 98468 to 99068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,284 DEBUG Processing 139/593 atomic regions from SNP 41532 to 42132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,477 DEBUG Processing 140/593 atomic regions from SNP 41832 to 42432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,478 DEBUG Processing 330/656 atomic regions from SNP 98768 to 99368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,480 DEBUG Processing 630/673 atomic regions from SNP 188980 to 189580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,481 DEBUG Processing 543/702 atomic regions from SNP 162740 to 163340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,670 DEBUG Processing 141/593 atomic regions from SNP 42132 to 42732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:12,726 DEBUG Processing 331/656 atomic regions from SNP 99068 to 99668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:12,741 DEBUG Processing 631/673 atomic regions from SNP 189280 to 189880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:12,754 DEBUG Processing 544/702 atomic regions from SNP 163040 to 163640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:12,955 DEBUG Processing 142/593 atomic regions from SNP 42432 to 43032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,053 DEBUG Processing 332/656 atomic regions from SNP 99368 to 99968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:13,094 DEBUG Processing 632/673 atomic regions from SNP 189580 to 190180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,120 DEBUG Processing 545/702 atomic regions from SNP 163340 to 163940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:13,271 DEBUG Processing 143/593 atomic regions from SNP 42732 to 43332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,382 DEBUG Processing 333/656 atomic regions from SNP 99668 to 100268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:13,452 DEBUG Processing 633/673 atomic regions from SNP 189880 to 190480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,457 DEBUG Processing 546/702 atomic regions from SNP 163640 to 164240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:13,518 DEBUG Processing 144/593 atomic regions from SNP 43032 to 43632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:13,696 DEBUG Processing 334/656 atomic regions from SNP 99968 to 100568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:13,769 DEBUG Processing 547/702 atomic regions from SNP 163940 to 164540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:13,789 DEBUG Processing 634/673 atomic regions from SNP 190180 to 190780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:13,797 DEBUG Processing 145/593 atomic regions from SNP 43332 to 43932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,005 DEBUG Processing 335/656 atomic regions from SNP 100268 to 100868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,085 DEBUG Processing 548/702 atomic regions from SNP 164240 to 164840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,088 DEBUG Processing 146/593 atomic regions from SNP 43632 to 44232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,097 DEBUG Processing 635/673 atomic regions from SNP 190480 to 191080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,309 DEBUG Processing 336/656 atomic regions from SNP 100568 to 101168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,320 DEBUG Processing 147/593 atomic regions from SNP 43932 to 44532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,337 DEBUG Processing 636/673 atomic regions from SNP 190780 to 191380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,357 DEBUG Processing 549/702 atomic regions from SNP 164540 to 165140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,517 DEBUG Processing 148/593 atomic regions from SNP 44232 to 44832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,527 DEBUG Processing 337/656 atomic regions from SNP 100868 to 101468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,550 DEBUG Processing 637/673 atomic regions from SNP 191080 to 191680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,615 DEBUG Processing 550/702 atomic regions from SNP 164840 to 165440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,702 DEBUG Processing 149/593 atomic regions from SNP 44532 to 45132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,728 DEBUG Processing 338/656 atomic regions from SNP 101168 to 101768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,749 DEBUG Processing 638/673 atomic regions from SNP 191380 to 191980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:14,855 DEBUG Processing 551/702 atomic regions from SNP 165140 to 165740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:14,886 DEBUG Processing 150/593 atomic regions from SNP 44832 to 45432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:14,924 DEBUG Processing 339/656 atomic regions from SNP 101468 to 102068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:14,969 DEBUG Processing 639/673 atomic regions from SNP 191680 to 192280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,073 DEBUG Processing 151/593 atomic regions from SNP 45132 to 45732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,090 DEBUG Processing 552/702 atomic regions from SNP 165440 to 166040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,119 DEBUG Processing 340/656 atomic regions from SNP 101768 to 102368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,189 DEBUG Processing 640/673 atomic regions from SNP 191980 to 192580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,247 DEBUG Processing 152/593 atomic regions from SNP 45432 to 46032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,314 DEBUG Processing 341/656 atomic regions from SNP 102068 to 102668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,323 DEBUG Processing 553/702 atomic regions from SNP 165740 to 166340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,381 DEBUG Processing 641/673 atomic regions from SNP 192280 to 192880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,423 DEBUG Processing 153/593 atomic regions from SNP 45732 to 46332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,506 DEBUG Processing 342/656 atomic regions from SNP 102368 to 102968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,560 DEBUG Processing 554/702 atomic regions from SNP 166040 to 166640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,574 DEBUG Processing 642/673 atomic regions from SNP 192580 to 193180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,598 DEBUG Processing 154/593 atomic regions from SNP 46032 to 46632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,701 DEBUG Processing 343/656 atomic regions from SNP 102668 to 103268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,770 DEBUG Processing 643/673 atomic regions from SNP 192880 to 193480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:15,780 DEBUG Processing 155/593 atomic regions from SNP 46332 to 46932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,796 DEBUG Processing 555/702 atomic regions from SNP 166340 to 166940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:15,897 DEBUG Processing 344/656 atomic regions from SNP 102968 to 103568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:15,980 DEBUG Processing 156/593 atomic regions from SNP 46632 to 47232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:15,984 DEBUG Processing 644/673 atomic regions from SNP 193180 to 193780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:16,057 DEBUG Processing 556/702 atomic regions from SNP 166640 to 167240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,137 DEBUG Processing 345/656 atomic regions from SNP 103268 to 103868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,254 DEBUG Processing 157/593 atomic regions from SNP 46932 to 47532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:16,265 DEBUG Processing 645/673 atomic regions from SNP 193480 to 194080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:16,402 DEBUG Processing 557/702 atomic regions from SNP 166940 to 167540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,435 DEBUG Processing 346/656 atomic regions from SNP 103568 to 104168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,494 DEBUG Processing 158/593 atomic regions from SNP 47232 to 47832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:16,510 DEBUG Processing 646/673 atomic regions from SNP 193780 to 194380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:16,732 DEBUG Processing 558/702 atomic regions from SNP 167240 to 167840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:16,743 DEBUG Processing 347/656 atomic regions from SNP 103868 to 104468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:16,775 DEBUG Processing 159/593 atomic regions from SNP 47532 to 48132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:16,806 DEBUG Processing 647/673 atomic regions from SNP 194080 to 194680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,044 DEBUG Processing 348/656 atomic regions from SNP 104168 to 104768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,060 DEBUG Processing 160/593 atomic regions from SNP 47832 to 48432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,076 DEBUG Processing 559/702 atomic regions from SNP 167540 to 168140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:17,101 DEBUG Processing 648/673 atomic regions from SNP 194380 to 194980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,355 DEBUG Processing 161/593 atomic regions from SNP 48132 to 48732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,355 DEBUG Processing 349/656 atomic regions from SNP 104468 to 105068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,416 DEBUG Processing 649/673 atomic regions from SNP 194680 to 195280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,426 DEBUG Processing 560/702 atomic regions from SNP 167840 to 168440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:17,651 DEBUG Processing 162/593 atomic regions from SNP 48432 to 49032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,663 DEBUG Processing 350/656 atomic regions from SNP 104768 to 105368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,694 DEBUG Processing 650/673 atomic regions from SNP 194980 to 195580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:17,742 DEBUG Processing 561/702 atomic regions from SNP 168140 to 168740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:17,847 DEBUG Processing 163/593 atomic regions from SNP 48732 to 49332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:17,880 DEBUG Processing 351/656 atomic regions from SNP 105068 to 105668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:17,910 DEBUG Processing 651/673 atomic regions from SNP 195280 to 195880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,000 DEBUG Processing 562/702 atomic regions from SNP 168440 to 169040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,036 DEBUG Processing 164/593 atomic regions from SNP 49032 to 49632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,085 DEBUG Processing 352/656 atomic regions from SNP 105368 to 105968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,123 DEBUG Processing 652/673 atomic regions from SNP 195580 to 196180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,251 DEBUG Processing 165/593 atomic regions from SNP 49332 to 49932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,271 DEBUG Processing 563/702 atomic regions from SNP 168740 to 169340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,354 DEBUG Processing 353/656 atomic regions from SNP 105668 to 106268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,375 DEBUG Processing 653/673 atomic regions from SNP 195880 to 196480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,473 DEBUG Processing 166/593 atomic regions from SNP 49632 to 50232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,529 DEBUG Processing 564/702 atomic regions from SNP 169040 to 169640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,646 DEBUG Processing 354/656 atomic regions from SNP 105968 to 106568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,650 DEBUG Processing 654/673 atomic regions from SNP 196180 to 196780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,696 DEBUG Processing 167/593 atomic regions from SNP 49932 to 50532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:18,763 DEBUG Processing 565/702 atomic regions from SNP 169340 to 169940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:18,924 DEBUG Processing 355/656 atomic regions from SNP 106268 to 106868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:18,926 DEBUG Processing 655/673 atomic regions from SNP 196480 to 197080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:18,961 DEBUG Processing 168/593 atomic regions from SNP 50232 to 50832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,032 DEBUG Processing 566/702 atomic regions from SNP 169640 to 170240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,187 DEBUG Processing 356/656 atomic regions from SNP 106568 to 107168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:19,190 DEBUG Processing 656/673 atomic regions from SNP 196780 to 197380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,196 DEBUG Processing 169/593 atomic regions from SNP 50532 to 51132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,274 DEBUG Processing 567/702 atomic regions from SNP 169940 to 170540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,456 DEBUG Processing 170/593 atomic regions from SNP 50832 to 51432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,465 DEBUG Processing 657/673 atomic regions from SNP 197080 to 197680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,491 DEBUG Processing 357/656 atomic regions from SNP 106868 to 107468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:19,552 DEBUG Processing 568/702 atomic regions from SNP 170240 to 170840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,706 DEBUG Processing 171/593 atomic regions from SNP 51132 to 51732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,736 DEBUG Processing 658/673 atomic regions from SNP 197380 to 197980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:19,798 DEBUG Processing 358/656 atomic regions from SNP 107168 to 107768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:19,839 DEBUG Processing 569/702 atomic regions from SNP 170540 to 171140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:19,926 DEBUG Processing 172/593 atomic regions from SNP 51432 to 52032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:19,959 DEBUG Processing 659/673 atomic regions from SNP 197680 to 198280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,034 DEBUG Processing 359/656 atomic regions from SNP 107468 to 108068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,058 DEBUG Processing 570/702 atomic regions from SNP 170840 to 171440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,117 DEBUG Processing 173/593 atomic regions from SNP 51732 to 52332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,168 DEBUG Processing 660/673 atomic regions from SNP 197980 to 198580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,329 DEBUG Processing 360/656 atomic regions from SNP 107768 to 108368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,357 DEBUG Processing 571/702 atomic regions from SNP 171140 to 171740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,370 DEBUG Processing 174/593 atomic regions from SNP 52032 to 52632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,415 DEBUG Processing 661/673 atomic regions from SNP 198280 to 198880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,613 DEBUG Processing 175/593 atomic regions from SNP 52332 to 52932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,613 DEBUG Processing 361/656 atomic regions from SNP 108068 to 108668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,646 DEBUG Processing 572/702 atomic regions from SNP 171440 to 172040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:20,664 DEBUG Processing 662/673 atomic regions from SNP 198580 to 199180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,857 DEBUG Processing 176/593 atomic regions from SNP 52632 to 53232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:20,878 DEBUG Processing 362/656 atomic regions from SNP 108368 to 108968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:20,937 DEBUG Processing 663/673 atomic regions from SNP 198880 to 199480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:20,956 DEBUG Processing 573/702 atomic regions from SNP 171740 to 172340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,049 DEBUG Processing 177/593 atomic regions from SNP 52932 to 53532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,093 DEBUG Processing 363/656 atomic regions from SNP 108668 to 109268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,151 DEBUG Processing 664/673 atomic regions from SNP 199180 to 199780 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,198 DEBUG Processing 574/702 atomic regions from SNP 172040 to 172640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,238 DEBUG Processing 178/593 atomic regions from SNP 53232 to 53832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,314 DEBUG Processing 364/656 atomic regions from SNP 108968 to 109568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,356 DEBUG Processing 665/673 atomic regions from SNP 199480 to 200080 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,432 DEBUG Processing 179/593 atomic regions from SNP 53532 to 54132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,442 DEBUG Processing 575/702 atomic regions from SNP 172340 to 172940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,530 DEBUG Processing 365/656 atomic regions from SNP 109268 to 109868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,568 DEBUG Processing 666/673 atomic regions from SNP 199780 to 200380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,621 DEBUG Processing 180/593 atomic regions from SNP 53832 to 54432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,699 DEBUG Processing 576/702 atomic regions from SNP 172640 to 173240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,738 DEBUG Processing 366/656 atomic regions from SNP 109568 to 110168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,779 DEBUG Processing 667/673 atomic regions from SNP 200080 to 200680 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,807 DEBUG Processing 181/593 atomic regions from SNP 54132 to 54732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:21,955 DEBUG Processing 577/702 atomic regions from SNP 172940 to 173540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:21,964 DEBUG Processing 367/656 atomic regions from SNP 109868 to 110468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:21,983 DEBUG Processing 668/673 atomic regions from SNP 200380 to 200980 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:21,997 DEBUG Processing 182/593 atomic regions from SNP 54432 to 55032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,218 DEBUG Processing 183/593 atomic regions from SNP 54732 to 55332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,220 DEBUG Processing 669/673 atomic regions from SNP 200680 to 201280 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,228 DEBUG Processing 578/702 atomic regions from SNP 173240 to 173840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:22,235 DEBUG Processing 368/656 atomic regions from SNP 110168 to 110768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:22,468 DEBUG Processing 184/593 atomic regions from SNP 55032 to 55632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,486 DEBUG Processing 670/673 atomic regions from SNP 200980 to 201580 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,541 DEBUG Processing 369/656 atomic regions from SNP 110468 to 111068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:22,553 DEBUG Processing 579/702 atomic regions from SNP 173540 to 174140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:22,657 DEBUG Processing 185/593 atomic regions from SNP 55332 to 55932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,696 DEBUG Processing 671/673 atomic regions from SNP 201280 to 201880 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,757 DEBUG Processing 370/656 atomic regions from SNP 110768 to 111368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:22,792 DEBUG Processing 580/702 atomic regions from SNP 173840 to 174440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:22,842 DEBUG Processing 186/593 atomic regions from SNP 55632 to 56232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:22,921 DEBUG Processing 672/673 atomic regions from SNP 201580 to 202180 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:22,960 DEBUG Processing 371/656 atomic regions from SNP 111068 to 111668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,024 DEBUG Processing 581/702 atomic regions from SNP 174140 to 174740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,037 DEBUG Processing 187/593 atomic regions from SNP 55932 to 56532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,158 DEBUG Processing 673/673 atomic regions from SNP 201880 to 202480 for chr13 (subchromosome 1 of 1). 2025-01-31 09:59:23,167 DEBUG Processing 372/656 atomic regions from SNP 111368 to 111968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,254 DEBUG Processing 188/593 atomic regions from SNP 56232 to 56832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,277 DEBUG Processing 582/702 atomic regions from SNP 174440 to 175040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,304 DEBUG Unique SNPs positions in subchromosome 1: 202481 2025-01-31 09:59:23,385 DEBUG Processing 373/656 atomic regions from SNP 111668 to 112268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,443 DEBUG Processing 189/593 atomic regions from SNP 56532 to 57132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,526 DEBUG Processing 583/702 atomic regions from SNP 174740 to 175340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,620 DEBUG Processing 374/656 atomic regions from SNP 111968 to 112568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,631 DEBUG Processing 190/593 atomic regions from SNP 56832 to 57432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,765 DEBUG Processing 584/702 atomic regions from SNP 175040 to 175640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:23,819 DEBUG Processing 191/593 atomic regions from SNP 57132 to 57732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:23,852 DEBUG Processing 375/656 atomic regions from SNP 112268 to 112868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:23,996 DEBUG Processing 585/702 atomic regions from SNP 175340 to 175940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,004 DEBUG Processing 192/593 atomic regions from SNP 57432 to 58032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,059 DEBUG Processing 376/656 atomic regions from SNP 112568 to 113168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:24,211 DEBUG Processing 193/593 atomic regions from SNP 57732 to 58332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,224 DEBUG Processing 586/702 atomic regions from SNP 175640 to 176240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,289 DEBUG Processing 377/656 atomic regions from SNP 112868 to 113468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:24,473 DEBUG Processing 194/593 atomic regions from SNP 58032 to 58632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,516 DEBUG Processing 587/702 atomic regions from SNP 175940 to 176540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,561 DEBUG Processing 378/656 atomic regions from SNP 113168 to 113768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:24,731 DEBUG Processing 195/593 atomic regions from SNP 58332 to 58932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:24,804 DEBUG Processing 588/702 atomic regions from SNP 176240 to 176840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:24,840 DEBUG Processing 379/656 atomic regions from SNP 113468 to 114068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,015 DEBUG Processing 196/593 atomic regions from SNP 58632 to 59232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,105 DEBUG Processing 380/656 atomic regions from SNP 113768 to 114368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,121 DEBUG Processing 589/702 atomic regions from SNP 176540 to 177140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,295 DEBUG Processing 197/593 atomic regions from SNP 58932 to 59532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,381 DEBUG Processing 381/656 atomic regions from SNP 114068 to 114668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,432 DEBUG Processing 590/702 atomic regions from SNP 176840 to 177440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,506 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:59:25,508 DEBUG chr16: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.010 2025-01-31 09:59:25,545 DEBUG Processing 198/593 atomic regions from SNP 59232 to 59832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,618 DEBUG Processing 382/656 atomic regions from SNP 114368 to 114968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,671 DEBUG Processing 591/702 atomic regions from SNP 177140 to 177740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,742 DEBUG Processing 199/593 atomic regions from SNP 59532 to 60132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:25,877 DEBUG Processing 383/656 atomic regions from SNP 114668 to 115268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:25,927 DEBUG Processing 592/702 atomic regions from SNP 177440 to 178040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:25,974 DEBUG Processing 200/593 atomic regions from SNP 59832 to 60432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,139 DEBUG Processing 384/656 atomic regions from SNP 114968 to 115568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:26,226 DEBUG Processing 593/702 atomic regions from SNP 177740 to 178340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,226 DEBUG Processing 201/593 atomic regions from SNP 60132 to 60732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,398 DEBUG Processing 385/656 atomic regions from SNP 115268 to 115868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:26,448 DEBUG Processing 202/593 atomic regions from SNP 60432 to 61032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,475 DEBUG Processing 594/702 atomic regions from SNP 178040 to 178640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,707 DEBUG Processing 386/656 atomic regions from SNP 115568 to 116168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:26,710 DEBUG Processing 203/593 atomic regions from SNP 60732 to 61332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,782 DEBUG Processing 595/702 atomic regions from SNP 178340 to 178940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:26,949 DEBUG Processing 204/593 atomic regions from SNP 61032 to 61632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:26,973 DEBUG Processing 387/656 atomic regions from SNP 115868 to 116468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,070 DEBUG Processing 596/702 atomic regions from SNP 178640 to 179240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,191 DEBUG Processing 205/593 atomic regions from SNP 61332 to 61932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,207 DEBUG Processing 388/656 atomic regions from SNP 116168 to 116768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,312 DEBUG Processing 597/702 atomic regions from SNP 178940 to 179540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,462 DEBUG Processing 206/593 atomic regions from SNP 61632 to 62232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,468 DEBUG Processing 389/656 atomic regions from SNP 116468 to 117068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,578 DEBUG Processing 598/702 atomic regions from SNP 179240 to 179840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,696 DEBUG Processing 207/593 atomic regions from SNP 61932 to 62532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,713 DEBUG Processing 390/656 atomic regions from SNP 116768 to 117368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:27,826 DEBUG Processing 599/702 atomic regions from SNP 179540 to 180140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:27,875 DEBUG chr16 total SNP count: 167252 2025-01-31 09:59:27,875 DEBUG chr16 length: 98207768 2025-01-31 09:59:27,875 DEBUG ----------------------------------------- 2025-01-31 09:59:27,875 INFO Processing SNPs in chr16 2025-01-31 09:59:27,925 DEBUG Processing 208/593 atomic regions from SNP 62232 to 62832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:27,976 DEBUG Processing 391/656 atomic regions from SNP 117068 to 117668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,041 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 167252)] 2025-01-31 09:59:28,058 DEBUG Processing 600/702 atomic regions from SNP 179840 to 180440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,108 DEBUG Processing 209/593 atomic regions from SNP 62532 to 63132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,153 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:59:28,187 DEBUG Processing 392/656 atomic regions from SNP 117368 to 117968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,311 DEBUG Processing 601/702 atomic regions from SNP 180140 to 180740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,316 DEBUG Processing 210/593 atomic regions from SNP 62832 to 63432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,427 DEBUG Processing 393/656 atomic regions from SNP 117668 to 118268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,543 DEBUG Processing 211/593 atomic regions from SNP 63132 to 63732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,584 DEBUG Processing 602/702 atomic regions from SNP 180440 to 181040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,658 DEBUG Processing 394/656 atomic regions from SNP 117968 to 118568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,760 DEBUG Processing 212/593 atomic regions from SNP 63432 to 64032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:28,876 DEBUG Processing 603/702 atomic regions from SNP 180740 to 181340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:28,909 DEBUG Processing 395/656 atomic regions from SNP 118268 to 118868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:28,960 DEBUG Processing 213/593 atomic regions from SNP 63732 to 64332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,128 DEBUG Processing 604/702 atomic regions from SNP 181040 to 181640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,182 DEBUG Processing 396/656 atomic regions from SNP 118568 to 119168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,184 DEBUG Processing 214/593 atomic regions from SNP 64032 to 64632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,363 DEBUG Processing 605/702 atomic regions from SNP 181340 to 181940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,424 DEBUG Processing 215/593 atomic regions from SNP 64332 to 64932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,441 DEBUG Processing 397/656 atomic regions from SNP 118868 to 119468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,607 DEBUG Processing 606/702 atomic regions from SNP 181640 to 182240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,609 DEBUG Processing 216/593 atomic regions from SNP 64632 to 65232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,653 DEBUG Processing 398/656 atomic regions from SNP 119168 to 119768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,793 DEBUG Processing 217/593 atomic regions from SNP 64932 to 65532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:29,857 DEBUG Processing 607/702 atomic regions from SNP 181940 to 182540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:29,865 DEBUG Processing 399/656 atomic regions from SNP 119468 to 120068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:29,981 DEBUG Processing 218/593 atomic regions from SNP 65232 to 65832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,100 DEBUG Processing 400/656 atomic regions from SNP 119768 to 120368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,104 DEBUG Processing 608/702 atomic regions from SNP 182240 to 182840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,166 DEBUG Processing 219/593 atomic regions from SNP 65532 to 66132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,349 DEBUG Processing 401/656 atomic regions from SNP 120068 to 120668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,352 DEBUG Processing 220/593 atomic regions from SNP 65832 to 66432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,356 DEBUG Processing 609/702 atomic regions from SNP 182540 to 183140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,538 DEBUG Processing 221/593 atomic regions from SNP 66132 to 66732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,596 DEBUG Processing 402/656 atomic regions from SNP 120368 to 120968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,605 DEBUG Processing 610/702 atomic regions from SNP 182840 to 183440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,727 DEBUG Processing 222/593 atomic regions from SNP 66432 to 67032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:30,848 DEBUG Processing 611/702 atomic regions from SNP 183140 to 183740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:30,851 DEBUG Processing 403/656 atomic regions from SNP 120668 to 121268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:30,912 DEBUG Processing 223/593 atomic regions from SNP 66732 to 67332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,102 DEBUG Processing 224/593 atomic regions from SNP 67032 to 67632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,103 DEBUG Processing 404/656 atomic regions from SNP 120968 to 121568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,103 DEBUG Processing 612/702 atomic regions from SNP 183440 to 184040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,305 DEBUG Processing 225/593 atomic regions from SNP 67332 to 67932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,337 DEBUG Processing 405/656 atomic regions from SNP 121268 to 121868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,357 DEBUG Processing 613/702 atomic regions from SNP 183740 to 184340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,491 DEBUG Processing 226/593 atomic regions from SNP 67632 to 68232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,551 DEBUG Processing 406/656 atomic regions from SNP 121568 to 122168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,588 DEBUG Processing 614/702 atomic regions from SNP 184040 to 184640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,676 DEBUG Processing 227/593 atomic regions from SNP 67932 to 68532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,767 DEBUG Processing 407/656 atomic regions from SNP 121868 to 122468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:31,837 DEBUG Processing 615/702 atomic regions from SNP 184340 to 184940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:31,869 DEBUG Processing 228/593 atomic regions from SNP 68232 to 68832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:31,983 DEBUG Processing 408/656 atomic regions from SNP 122168 to 122768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,067 DEBUG Processing 229/593 atomic regions from SNP 68532 to 69132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,068 DEBUG Processing 616/702 atomic regions from SNP 184640 to 185240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,190 DEBUG Processing 409/656 atomic regions from SNP 122468 to 123068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,262 DEBUG Processing 230/593 atomic regions from SNP 68832 to 69432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,290 DEBUG Processing 617/702 atomic regions from SNP 184940 to 185540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,401 DEBUG Processing 410/656 atomic regions from SNP 122768 to 123368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,456 DEBUG Processing 231/593 atomic regions from SNP 69132 to 69732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,511 DEBUG Processing 618/702 atomic regions from SNP 185240 to 185840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,613 DEBUG Processing 411/656 atomic regions from SNP 123068 to 123668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,648 DEBUG Processing 232/593 atomic regions from SNP 69432 to 70032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,733 DEBUG Processing 619/702 atomic regions from SNP 185540 to 186140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:32,828 DEBUG Processing 412/656 atomic regions from SNP 123368 to 123968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:32,842 DEBUG Processing 233/593 atomic regions from SNP 69732 to 70332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:32,978 DEBUG Processing 620/702 atomic regions from SNP 185840 to 186440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,035 DEBUG Processing 234/593 atomic regions from SNP 70032 to 70632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,051 DEBUG Processing 413/656 atomic regions from SNP 123668 to 124268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,207 DEBUG Processing 621/702 atomic regions from SNP 186140 to 186740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,227 DEBUG Processing 235/593 atomic regions from SNP 70332 to 70932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,267 DEBUG Processing 414/656 atomic regions from SNP 123968 to 124568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,418 DEBUG Processing 236/593 atomic regions from SNP 70632 to 71232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,423 DEBUG Processing 622/702 atomic regions from SNP 186440 to 187040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,475 DEBUG Processing 415/656 atomic regions from SNP 124268 to 124868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,613 DEBUG Processing 237/593 atomic regions from SNP 70932 to 71532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,647 DEBUG Processing 623/702 atomic regions from SNP 186740 to 187340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,718 DEBUG Processing 416/656 atomic regions from SNP 124568 to 125168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:33,854 DEBUG Processing 238/593 atomic regions from SNP 71232 to 71832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:33,904 DEBUG Processing 624/702 atomic regions from SNP 187040 to 187640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:33,953 DEBUG Processing 417/656 atomic regions from SNP 124868 to 125468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,073 DEBUG Processing 239/593 atomic regions from SNP 71532 to 72132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,156 DEBUG Processing 625/702 atomic regions from SNP 187340 to 187940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,217 DEBUG Processing 418/656 atomic regions from SNP 125168 to 125768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,267 DEBUG Processing 240/593 atomic regions from SNP 71832 to 72432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,388 DEBUG Processing 626/702 atomic regions from SNP 187640 to 188240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,474 DEBUG Processing 419/656 atomic regions from SNP 125468 to 126068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,493 DEBUG Processing 241/593 atomic regions from SNP 72132 to 72732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,669 DEBUG Processing 627/702 atomic regions from SNP 187940 to 188540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,710 DEBUG Processing 420/656 atomic regions from SNP 125768 to 126368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:34,720 DEBUG Processing 242/593 atomic regions from SNP 72432 to 73032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,963 DEBUG Processing 628/702 atomic regions from SNP 188240 to 188840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:34,964 DEBUG Processing 243/593 atomic regions from SNP 72732 to 73332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:34,974 DEBUG Processing 421/656 atomic regions from SNP 126068 to 126668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,128 DEBUG Subchromosome time: 185.48965467512608, subchromosome SNPs: 202481 2025-01-31 09:59:35,128 DEBUG Estimated BADs: [1.02, 10.19, 1.02, 18.35, 0.51, 20.39, 4.08, 0.29, 2.04, 8.15, 2.04, 12.23, 2.04, 4.08, 2.04, 10.19, 2.04, 4.08, 1.02, 6.12, 2.04, 4.08, 0.68, 20.39, 0.51, 20.39, 4.08, 0.41, 2.04, 0.68, 4.08, 14.27, 2.04, 4.08, 2.04, 0.68, 6.12] SNP counts: [30348, 608, 386, 557, 1724, 893, 2683, 4707, 10223, 775, 6258, 437, 9404, 15526, 4915, 2438, 4546, 5324, 2686, 2546, 10871, 7322, 3050, 109, 4446, 123, 2173, 1191, 1704, 12016, 17930, 266, 19231, 4249, 2805, 7200, 811] SNP IDs counts: [30348, 608, 386, 557, 1724, 893, 2683, 4707, 10223, 775, 6258, 437, 9404, 15526, 4915, 2438, 4546, 5324, 2686, 2546, 10871, 7322, 3050, 109, 4446, 123, 2173, 1191, 1704, 12016, 17930, 266, 19231, 4249, 2805, 7200, 811] Critical gap: 598799bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 21.48Mbp, 21.71Mbp, 22.05Mbp, 23.28Mbp, 23.77Mbp, 25.22Mbp, 28.08Mbp, 33.93Mbp, 34.35Mbp, 37.82Mbp, 38.04Mbp, 43.15Mbp, 51.83Mbp, 54.44Mbp, 55.73Mbp, 58.11Mbp, 60.99Mbp, 63.10Mbp, 64.46Mbp, 72.28Mbp, 76.35Mbp, 78.16Mbp, 78.22Mbp, 80.84Mbp, 80.90Mbp, 82.10Mbp, 82.81Mbp, 83.75Mbp, 90.88Mbp, 100.65Mbp, 100.79Mbp, 111.49Mbp, 113.79Mbp, 115.28Mbp, 119.41Mbp, 120.42Mbp] 2025-01-31 09:59:35,128 DEBUG chr13 time: 185.49015744775534 s 2025-01-31 09:59:35,215 DEBUG Processing 244/593 atomic regions from SNP 73032 to 73632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:35,240 DEBUG Processing 629/702 atomic regions from SNP 188540 to 189140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:35,250 DEBUG Processing 422/656 atomic regions from SNP 126368 to 126968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,263 DEBUG chr13: Fitting background model for 37 segments 2025-01-31 09:59:35,436 DEBUG Processing 245/593 atomic regions from SNP 73332 to 73932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:35,493 DEBUG Processing 630/702 atomic regions from SNP 188840 to 189440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:35,521 DEBUG Processing 423/656 atomic regions from SNP 126668 to 127268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,681 DEBUG Processing 246/593 atomic regions from SNP 73632 to 74232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:35,747 DEBUG Processing 631/702 atomic regions from SNP 189140 to 189740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:35,844 DEBUG Processing 424/656 atomic regions from SNP 126968 to 127568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:35,923 DEBUG Processing 247/593 atomic regions from SNP 73932 to 74532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,008 DEBUG Processing 632/702 atomic regions from SNP 189440 to 190040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,120 DEBUG Processing 425/656 atomic regions from SNP 127268 to 127868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,133 DEBUG Processing 248/593 atomic regions from SNP 74232 to 74832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,243 DEBUG Processing 633/702 atomic regions from SNP 189740 to 190340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,329 DEBUG Processing 249/593 atomic regions from SNP 74532 to 75132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,367 DEBUG Processing 426/656 atomic regions from SNP 127568 to 128168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,466 DEBUG Processing 634/702 atomic regions from SNP 190040 to 190640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,514 DEBUG Processing 250/593 atomic regions from SNP 74832 to 75432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,606 DEBUG Processing 427/656 atomic regions from SNP 127868 to 128468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,683 DEBUG Processing 635/702 atomic regions from SNP 190340 to 190940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:36,697 DEBUG Processing 251/593 atomic regions from SNP 75132 to 75732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,840 DEBUG Processing 428/656 atomic regions from SNP 128168 to 128768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:36,880 DEBUG Processing 252/593 atomic regions from SNP 75432 to 76032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:36,896 DEBUG Processing 636/702 atomic regions from SNP 190640 to 191240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,067 DEBUG Processing 253/593 atomic regions from SNP 75732 to 76332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,071 DEBUG Processing 429/656 atomic regions from SNP 128468 to 129068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,116 DEBUG Processing 637/702 atomic regions from SNP 190940 to 191540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,256 DEBUG Processing 254/593 atomic regions from SNP 76032 to 76632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,295 DEBUG Processing 430/656 atomic regions from SNP 128768 to 129368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,336 DEBUG Processing 638/702 atomic regions from SNP 191240 to 191840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,441 DEBUG Processing 255/593 atomic regions from SNP 76332 to 76932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,507 DEBUG Processing 431/656 atomic regions from SNP 129068 to 129668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,562 DEBUG Processing 639/702 atomic regions from SNP 191540 to 192140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,702 DEBUG Processing 256/593 atomic regions from SNP 76632 to 77232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:37,808 DEBUG Processing 432/656 atomic regions from SNP 129368 to 129968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:37,848 DEBUG Processing 640/702 atomic regions from SNP 191840 to 192440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:37,962 DEBUG Processing 257/593 atomic regions from SNP 76932 to 77532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,115 DEBUG Processing 433/656 atomic regions from SNP 129668 to 130268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:38,140 DEBUG Processing 641/702 atomic regions from SNP 192140 to 192740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:38,224 DEBUG Processing 258/593 atomic regions from SNP 77232 to 77832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,403 DEBUG Processing 434/656 atomic regions from SNP 129968 to 130568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:38,452 DEBUG Processing 642/702 atomic regions from SNP 192440 to 193040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:38,486 DEBUG Processing 259/593 atomic regions from SNP 77532 to 78132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,685 DEBUG Processing 435/656 atomic regions from SNP 130268 to 130868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:38,756 DEBUG Processing 260/593 atomic regions from SNP 77832 to 78432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:38,756 DEBUG Processing 643/702 atomic regions from SNP 192740 to 193340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:38,986 DEBUG Processing 436/656 atomic regions from SNP 130568 to 131168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,020 DEBUG Processing 261/593 atomic regions from SNP 78132 to 78732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,049 DEBUG Processing 644/702 atomic regions from SNP 193040 to 193640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,232 DEBUG Processing 262/593 atomic regions from SNP 78432 to 79032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,262 DEBUG Processing 437/656 atomic regions from SNP 130868 to 131468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,316 DEBUG Processing 645/702 atomic regions from SNP 193340 to 193940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,499 DEBUG Processing 263/593 atomic regions from SNP 78732 to 79332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,548 DEBUG Processing 438/656 atomic regions from SNP 131168 to 131768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,613 DEBUG Processing 646/702 atomic regions from SNP 193640 to 194240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,749 DEBUG Processing 264/593 atomic regions from SNP 79032 to 79632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:39,837 DEBUG Processing 439/656 atomic regions from SNP 131468 to 132068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:39,904 DEBUG Processing 647/702 atomic regions from SNP 193940 to 194540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:39,991 DEBUG Processing 265/593 atomic regions from SNP 79332 to 79932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,126 DEBUG Processing 440/656 atomic regions from SNP 131768 to 132368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,204 DEBUG Processing 648/702 atomic regions from SNP 194240 to 194840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:40,253 DEBUG Processing 266/593 atomic regions from SNP 79632 to 80232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,419 DEBUG Processing 441/656 atomic regions from SNP 132068 to 132668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,506 DEBUG Processing 649/702 atomic regions from SNP 194540 to 195140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:40,513 DEBUG Processing 267/593 atomic regions from SNP 79932 to 80532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,730 DEBUG Processing 442/656 atomic regions from SNP 132368 to 132968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:40,779 DEBUG Processing 268/593 atomic regions from SNP 80232 to 80832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:40,797 DEBUG Processing 650/702 atomic regions from SNP 194840 to 195440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,039 DEBUG Processing 443/656 atomic regions from SNP 132668 to 133268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:41,053 DEBUG Processing 269/593 atomic regions from SNP 80532 to 81132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:41,095 DEBUG Processing 651/702 atomic regions from SNP 195140 to 195740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,329 DEBUG Processing 270/593 atomic regions from SNP 80832 to 81432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:41,367 DEBUG Processing 444/656 atomic regions from SNP 132968 to 133568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:41,411 DEBUG Processing 652/702 atomic regions from SNP 195440 to 196040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,693 DEBUG Processing 271/593 atomic regions from SNP 81132 to 81732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:41,745 DEBUG Processing 445/656 atomic regions from SNP 133268 to 133868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:41,751 DEBUG Processing 653/702 atomic regions from SNP 195740 to 196340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:41,970 DEBUG Processing 272/593 atomic regions from SNP 81432 to 82032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,051 DEBUG Processing 654/702 atomic regions from SNP 196040 to 196640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,066 DEBUG Processing 446/656 atomic regions from SNP 133568 to 134168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,247 DEBUG Processing 273/593 atomic regions from SNP 81732 to 82332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,306 DEBUG Processing 655/702 atomic regions from SNP 196340 to 196940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,332 DEBUG Processing 447/656 atomic regions from SNP 133868 to 134468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,580 DEBUG Processing 274/593 atomic regions from SNP 82032 to 82632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:42,643 DEBUG Processing 656/702 atomic regions from SNP 196640 to 197240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:42,681 DEBUG Processing 448/656 atomic regions from SNP 134168 to 134768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:42,934 DEBUG Processing 275/593 atomic regions from SNP 82332 to 82932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:43,007 DEBUG Processing 657/702 atomic regions from SNP 196940 to 197540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:43,059 DEBUG Processing 449/656 atomic regions from SNP 134468 to 135068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:43,258 DEBUG Processing 276/593 atomic regions from SNP 82632 to 83232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:43,362 DEBUG Processing 658/702 atomic regions from SNP 197240 to 197840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:43,419 DEBUG Processing 450/656 atomic regions from SNP 134768 to 135368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:43,653 DEBUG Processing 277/593 atomic regions from SNP 82932 to 83532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:43,735 DEBUG Processing 659/702 atomic regions from SNP 197540 to 198140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:43,783 DEBUG Processing 451/656 atomic regions from SNP 135068 to 135668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:43,991 DEBUG Processing 278/593 atomic regions from SNP 83232 to 83832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:44,093 DEBUG Processing 660/702 atomic regions from SNP 197840 to 198440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,150 DEBUG Processing 452/656 atomic regions from SNP 135368 to 135968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:44,287 DEBUG Processing 279/593 atomic regions from SNP 83532 to 84132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:44,345 DEBUG Processing 661/702 atomic regions from SNP 198140 to 198740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,397 DEBUG Processing 453/656 atomic regions from SNP 135668 to 136268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:44,521 DEBUG Processing 280/593 atomic regions from SNP 83832 to 84432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:44,683 DEBUG Processing 662/702 atomic regions from SNP 198440 to 199040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:44,699 DEBUG Processing 454/656 atomic regions from SNP 135968 to 136568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:44,768 DEBUG Processing 281/593 atomic regions from SNP 84132 to 84732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,019 DEBUG Processing 663/702 atomic regions from SNP 198740 to 199340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:45,025 DEBUG Processing 455/656 atomic regions from SNP 136268 to 136868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:45,034 DEBUG Processing 282/593 atomic regions from SNP 84432 to 85032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,288 DEBUG Processing 283/593 atomic regions from SNP 84732 to 85332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,328 DEBUG Processing 456/656 atomic regions from SNP 136568 to 137168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:45,340 DEBUG Processing 664/702 atomic regions from SNP 199040 to 199640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:45,563 DEBUG Processing 284/593 atomic regions from SNP 85032 to 85632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,641 DEBUG Processing 457/656 atomic regions from SNP 136868 to 137468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:45,667 DEBUG Processing 665/702 atomic regions from SNP 199340 to 199940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:45,781 DEBUG Processing 285/593 atomic regions from SNP 85332 to 85932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:45,934 DEBUG Processing 458/656 atomic regions from SNP 137168 to 137768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:46,003 DEBUG Processing 666/702 atomic regions from SNP 199640 to 200240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:46,028 DEBUG Processing 286/593 atomic regions from SNP 85632 to 86232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,217 DEBUG Processing 459/656 atomic regions from SNP 137468 to 138068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:46,300 DEBUG Processing 287/593 atomic regions from SNP 85932 to 86532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,342 DEBUG Processing 667/702 atomic regions from SNP 199940 to 200540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:46,553 DEBUG Processing 460/656 atomic regions from SNP 137768 to 138368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:46,712 DEBUG Processing 288/593 atomic regions from SNP 86232 to 86832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:46,796 DEBUG Processing 668/702 atomic regions from SNP 200240 to 200840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:46,939 DEBUG Processing 461/656 atomic regions from SNP 138068 to 138668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:47,148 DEBUG Processing 289/593 atomic regions from SNP 86532 to 87132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,208 DEBUG Processing 669/702 atomic regions from SNP 200540 to 201140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:47,359 DEBUG Processing 462/656 atomic regions from SNP 138368 to 138968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:47,505 DEBUG Processing 290/593 atomic regions from SNP 86832 to 87432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,572 DEBUG Processing 670/702 atomic regions from SNP 200840 to 201440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:47,643 DEBUG Processing 463/656 atomic regions from SNP 138668 to 139268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:47,819 DEBUG Processing 291/593 atomic regions from SNP 87132 to 87732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:47,952 DEBUG Processing 671/702 atomic regions from SNP 201140 to 201740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:47,966 DEBUG Processing 464/656 atomic regions from SNP 138968 to 139568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,066 DEBUG Processing 292/593 atomic regions from SNP 87432 to 88032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,309 DEBUG Processing 465/656 atomic regions from SNP 139268 to 139868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,317 DEBUG Processing 672/702 atomic regions from SNP 201440 to 202040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:48,327 DEBUG Processing 293/593 atomic regions from SNP 87732 to 88332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,359 DEBUG Segmenting atomic regions: 2025-01-31 09:59:48,433 DEBUG Processing 1/556 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,580 DEBUG Processing 294/593 atomic regions from SNP 88032 to 88632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,627 DEBUG Processing 466/656 atomic regions from SNP 139568 to 140168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,645 DEBUG Processing 673/702 atomic regions from SNP 201740 to 202340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:48,699 DEBUG Processing 2/556 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,847 DEBUG Processing 295/593 atomic regions from SNP 88332 to 88932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:48,947 DEBUG Processing 467/656 atomic regions from SNP 139868 to 140468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:48,967 DEBUG Processing 3/556 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:48,974 DEBUG Processing 674/702 atomic regions from SNP 202040 to 202640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:49,103 DEBUG Processing 296/593 atomic regions from SNP 88632 to 89232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,293 DEBUG Processing 4/556 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:49,308 DEBUG Processing 468/656 atomic regions from SNP 140168 to 140768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:49,342 DEBUG Processing 675/702 atomic regions from SNP 202340 to 202940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:49,440 DEBUG Processing 297/593 atomic regions from SNP 88932 to 89532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,640 DEBUG Processing 5/556 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:49,669 DEBUG Processing 469/656 atomic regions from SNP 140468 to 141068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:49,710 DEBUG Processing 676/702 atomic regions from SNP 202640 to 203240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:49,718 DEBUG Processing 298/593 atomic regions from SNP 89232 to 89832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:49,949 DEBUG Processing 6/556 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:49,986 DEBUG Processing 470/656 atomic regions from SNP 140768 to 141368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,003 DEBUG Processing 299/593 atomic regions from SNP 89532 to 90132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,036 DEBUG Processing 677/702 atomic regions from SNP 202940 to 203540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:50,226 DEBUG Processing 7/556 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,249 DEBUG Processing 300/593 atomic regions from SNP 89832 to 90432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,257 DEBUG Processing 471/656 atomic regions from SNP 141068 to 141668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,338 DEBUG Processing 678/702 atomic regions from SNP 203240 to 203840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:50,496 DEBUG Processing 301/593 atomic regions from SNP 90132 to 90732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,499 DEBUG Processing 8/556 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,522 DEBUG Processing 472/656 atomic regions from SNP 141368 to 141968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,647 DEBUG Processing 679/702 atomic regions from SNP 203540 to 204140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:50,746 DEBUG Processing 302/593 atomic regions from SNP 90432 to 91032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:50,792 DEBUG Processing 9/556 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:50,805 DEBUG Processing 473/656 atomic regions from SNP 141668 to 142268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:50,956 DEBUG Processing 680/702 atomic regions from SNP 203840 to 204440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:51,000 DEBUG Processing 303/593 atomic regions from SNP 90732 to 91332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,075 DEBUG Processing 10/556 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,076 DEBUG Processing 474/656 atomic regions from SNP 141968 to 142568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,265 DEBUG Processing 304/593 atomic regions from SNP 91032 to 91632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,280 DEBUG Processing 681/702 atomic regions from SNP 204140 to 204740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:51,313 DEBUG Processing 475/656 atomic regions from SNP 142268 to 142868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,323 DEBUG Processing 11/556 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,528 DEBUG Processing 305/593 atomic regions from SNP 91332 to 91932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,575 DEBUG Processing 476/656 atomic regions from SNP 142568 to 143168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,599 DEBUG Processing 12/556 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,610 DEBUG Processing 682/702 atomic regions from SNP 204440 to 205040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:51,797 DEBUG Processing 306/593 atomic regions from SNP 91632 to 92232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:51,875 DEBUG Processing 477/656 atomic regions from SNP 142868 to 143468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:51,882 DEBUG Processing 13/556 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:51,943 DEBUG Processing 683/702 atomic regions from SNP 204740 to 205340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:52,054 DEBUG Processing 307/593 atomic regions from SNP 91932 to 92532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,152 DEBUG Processing 14/556 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,169 DEBUG Processing 478/656 atomic regions from SNP 143168 to 143768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:52,247 DEBUG Processing 684/702 atomic regions from SNP 205040 to 205640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:52,304 DEBUG Processing 308/593 atomic regions from SNP 92232 to 92832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,412 DEBUG Processing 15/556 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,447 DEBUG Processing 479/656 atomic regions from SNP 143468 to 144068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:52,540 DEBUG Processing 685/702 atomic regions from SNP 205340 to 205940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:52,557 DEBUG Processing 309/593 atomic regions from SNP 92532 to 93132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,667 DEBUG Processing 16/556 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,720 DEBUG Processing 480/656 atomic regions from SNP 143768 to 144368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:52,802 DEBUG Processing 310/593 atomic regions from SNP 92832 to 93432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:52,829 DEBUG Processing 686/702 atomic regions from SNP 205640 to 206240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:52,905 DEBUG Processing 17/556 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:52,996 DEBUG Processing 481/656 atomic regions from SNP 144068 to 144668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,099 DEBUG Processing 311/593 atomic regions from SNP 93132 to 93732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,163 DEBUG Processing 687/702 atomic regions from SNP 205940 to 206540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:53,196 DEBUG Processing 18/556 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:53,283 DEBUG Processing 482/656 atomic regions from SNP 144368 to 144968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,353 DEBUG Processing 312/593 atomic regions from SNP 93432 to 94032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,453 DEBUG Processing 19/556 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:53,477 DEBUG Processing 688/702 atomic regions from SNP 206240 to 206840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:53,556 DEBUG Processing 483/656 atomic regions from SNP 144668 to 145268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,609 DEBUG Processing 313/593 atomic regions from SNP 93732 to 94332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,706 DEBUG Processing 20/556 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:53,797 DEBUG Processing 689/702 atomic regions from SNP 206540 to 207140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:53,857 DEBUG Processing 484/656 atomic regions from SNP 144968 to 145568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:53,896 DEBUG Processing 314/593 atomic regions from SNP 94032 to 94632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:53,989 DEBUG Processing 21/556 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,115 DEBUG Processing 690/702 atomic regions from SNP 206840 to 207440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:54,149 DEBUG Processing 485/656 atomic regions from SNP 145268 to 145868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,159 DEBUG Processing 315/593 atomic regions from SNP 94332 to 94932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:54,247 DEBUG Processing 22/556 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,422 DEBUG Processing 691/702 atomic regions from SNP 207140 to 207740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:54,426 DEBUG Processing 486/656 atomic regions from SNP 145568 to 146168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,437 DEBUG Processing 316/593 atomic regions from SNP 94632 to 95232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:54,491 DEBUG Processing 23/556 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,698 DEBUG Processing 487/656 atomic regions from SNP 145868 to 146468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,707 DEBUG Processing 317/593 atomic regions from SNP 94932 to 95532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:54,725 DEBUG Processing 24/556 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,733 DEBUG Processing 692/702 atomic regions from SNP 207440 to 208040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:54,972 DEBUG Processing 488/656 atomic regions from SNP 146168 to 146768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:54,981 DEBUG Processing 25/556 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:54,992 DEBUG Processing 318/593 atomic regions from SNP 95232 to 95832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,041 DEBUG Processing 693/702 atomic regions from SNP 207740 to 208340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:55,192 DEBUG Processing 26/556 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,199 DEBUG Processing 319/593 atomic regions from SNP 95532 to 96132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,204 DEBUG Processing 489/656 atomic regions from SNP 146468 to 147068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,293 DEBUG Processing 694/702 atomic regions from SNP 208040 to 208640 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:55,440 DEBUG Processing 27/556 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,460 DEBUG Processing 320/593 atomic regions from SNP 95832 to 96432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,480 DEBUG Processing 490/656 atomic regions from SNP 146768 to 147368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,635 DEBUG Processing 695/702 atomic regions from SNP 208340 to 208940 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:55,656 DEBUG Processing 28/556 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,688 DEBUG Processing 321/593 atomic regions from SNP 96132 to 96732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,763 DEBUG Processing 491/656 atomic regions from SNP 147068 to 147668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:55,893 DEBUG Processing 29/556 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:55,927 DEBUG Processing 696/702 atomic regions from SNP 208640 to 209240 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:55,932 DEBUG Processing 322/593 atomic regions from SNP 96432 to 97032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:55,981 DEBUG Processing 492/656 atomic regions from SNP 147368 to 147968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,074 DEBUG Processing 30/556 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,145 DEBUG Processing 323/593 atomic regions from SNP 96732 to 97332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,174 DEBUG Processing 697/702 atomic regions from SNP 208940 to 209540 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:56,182 DEBUG Processing 493/656 atomic regions from SNP 147668 to 148268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,248 DEBUG Processing 31/556 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,346 DEBUG Processing 324/593 atomic regions from SNP 97032 to 97632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,381 DEBUG Processing 494/656 atomic regions from SNP 147968 to 148568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,412 DEBUG Processing 698/702 atomic regions from SNP 209240 to 209840 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:56,447 DEBUG Processing 32/556 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,527 DEBUG Processing 325/593 atomic regions from SNP 97332 to 97932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,579 DEBUG Processing 495/656 atomic regions from SNP 148268 to 148868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,641 DEBUG Processing 699/702 atomic regions from SNP 209540 to 210140 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:56,661 DEBUG Processing 33/556 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,705 DEBUG Processing 326/593 atomic regions from SNP 97632 to 98232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,779 DEBUG Processing 496/656 atomic regions from SNP 148568 to 149168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:56,868 DEBUG Processing 700/702 atomic regions from SNP 209840 to 210440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:56,868 DEBUG Processing 34/556 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:56,890 DEBUG Processing 327/593 atomic regions from SNP 97932 to 98532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:56,974 DEBUG Processing 497/656 atomic regions from SNP 148868 to 149468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,046 DEBUG Processing 35/556 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,068 DEBUG Processing 328/593 atomic regions from SNP 98232 to 98832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,076 DEBUG Processing 701/702 atomic regions from SNP 210140 to 210740 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:57,169 DEBUG Processing 498/656 atomic regions from SNP 149168 to 149768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,227 DEBUG Processing 36/556 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,253 DEBUG Processing 329/593 atomic regions from SNP 98532 to 99132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,279 DEBUG Processing 702/702 atomic regions from SNP 210440 to 211040 for chr11 (subchromosome 1 of 1). 2025-01-31 09:59:57,362 DEBUG Processing 499/656 atomic regions from SNP 149468 to 150068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,395 DEBUG Unique SNPs positions in subchromosome 1: 211041 2025-01-31 09:59:57,404 DEBUG Processing 37/556 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,430 DEBUG Processing 330/593 atomic regions from SNP 98832 to 99432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,558 DEBUG Processing 500/656 atomic regions from SNP 149768 to 150368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,581 DEBUG Processing 38/556 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,608 DEBUG Processing 331/593 atomic regions from SNP 99132 to 99732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,750 DEBUG Processing 501/656 atomic regions from SNP 150068 to 150668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,758 DEBUG Processing 39/556 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,788 DEBUG Processing 332/593 atomic regions from SNP 99432 to 100032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:57,939 DEBUG Processing 40/556 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:57,945 DEBUG Processing 502/656 atomic regions from SNP 150368 to 150968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:57,971 DEBUG Processing 333/593 atomic regions from SNP 99732 to 100332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,126 DEBUG Processing 41/556 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,148 DEBUG Processing 503/656 atomic regions from SNP 150668 to 151268 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,153 DEBUG Processing 334/593 atomic regions from SNP 100032 to 100632 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,302 DEBUG Processing 42/556 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,331 DEBUG Processing 335/593 atomic regions from SNP 100332 to 100932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,348 DEBUG Processing 504/656 atomic regions from SNP 150968 to 151568 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,479 DEBUG Processing 43/556 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,511 DEBUG Processing 336/593 atomic regions from SNP 100632 to 101232 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,542 DEBUG Processing 505/656 atomic regions from SNP 151268 to 151868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,682 DEBUG Processing 44/556 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,692 DEBUG Processing 337/593 atomic regions from SNP 100932 to 101532 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,738 DEBUG Processing 506/656 atomic regions from SNP 151568 to 152168 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:58,878 DEBUG Processing 338/593 atomic regions from SNP 101232 to 101832 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:58,898 DEBUG Processing 45/556 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:58,933 DEBUG Processing 507/656 atomic regions from SNP 151868 to 152468 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,058 DEBUG Processing 339/593 atomic regions from SNP 101532 to 102132 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,104 DEBUG Processing 46/556 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,127 DEBUG Processing 508/656 atomic regions from SNP 152168 to 152768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,234 DEBUG Processing 340/593 atomic regions from SNP 101832 to 102432 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,310 DEBUG Processing 47/556 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,327 DEBUG Processing 509/656 atomic regions from SNP 152468 to 153068 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,409 DEBUG Processing 341/593 atomic regions from SNP 102132 to 102732 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,520 DEBUG Processing 48/556 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,531 DEBUG Processing 510/656 atomic regions from SNP 152768 to 153368 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,592 DEBUG Processing 342/593 atomic regions from SNP 102432 to 103032 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,726 DEBUG Processing 511/656 atomic regions from SNP 153068 to 153668 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,727 DEBUG Processing 49/556 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,771 DEBUG Processing 343/593 atomic regions from SNP 102732 to 103332 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:59,920 DEBUG Processing 512/656 atomic regions from SNP 153368 to 153968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:59:59,924 DEBUG Processing 50/556 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:59,952 DEBUG Processing 344/593 atomic regions from SNP 103032 to 103632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,114 DEBUG Processing 513/656 atomic regions from SNP 153668 to 154268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:00,117 DEBUG Processing 51/556 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,136 DEBUG Processing 345/593 atomic regions from SNP 103332 to 103932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,308 DEBUG Processing 514/656 atomic regions from SNP 153968 to 154568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:00,322 DEBUG Processing 346/593 atomic regions from SNP 103632 to 104232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,322 DEBUG Processing 52/556 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,505 DEBUG Processing 347/593 atomic regions from SNP 103932 to 104532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,508 DEBUG Processing 515/656 atomic regions from SNP 154268 to 154868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:00,509 DEBUG Processing 53/556 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,687 DEBUG Processing 348/593 atomic regions from SNP 104232 to 104832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,687 DEBUG Processing 54/556 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,707 DEBUG Processing 516/656 atomic regions from SNP 154568 to 155168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:00,867 DEBUG Processing 55/556 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:00,869 DEBUG Processing 349/593 atomic regions from SNP 104532 to 105132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:00,904 DEBUG Processing 517/656 atomic regions from SNP 154868 to 155468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:01,046 DEBUG Processing 56/556 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,047 DEBUG Processing 350/593 atomic regions from SNP 104832 to 105432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,102 DEBUG Processing 518/656 atomic regions from SNP 155168 to 155768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:01,231 DEBUG Processing 351/593 atomic regions from SNP 105132 to 105732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,236 DEBUG Processing 57/556 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,302 DEBUG Processing 519/656 atomic regions from SNP 155468 to 156068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:01,412 DEBUG Processing 352/593 atomic regions from SNP 105432 to 106032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,414 DEBUG Processing 58/556 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,531 DEBUG Processing 520/656 atomic regions from SNP 155768 to 156368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:01,606 DEBUG Processing 59/556 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,609 DEBUG Processing 353/593 atomic regions from SNP 105732 to 106332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,737 DEBUG Processing 521/656 atomic regions from SNP 156068 to 156668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:01,816 DEBUG Processing 354/593 atomic regions from SNP 106032 to 106632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:01,816 DEBUG Processing 60/556 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:01,934 DEBUG Processing 522/656 atomic regions from SNP 156368 to 156968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:02,028 DEBUG Processing 61/556 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,028 DEBUG Processing 355/593 atomic regions from SNP 106332 to 106932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,126 DEBUG Processing 523/656 atomic regions from SNP 156668 to 157268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:02,224 DEBUG Processing 356/593 atomic regions from SNP 106632 to 107232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,249 DEBUG Processing 62/556 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,322 DEBUG Processing 524/656 atomic regions from SNP 156968 to 157568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:02,481 DEBUG Processing 357/593 atomic regions from SNP 106932 to 107532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,518 DEBUG Processing 63/556 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,536 DEBUG Processing 525/656 atomic regions from SNP 157268 to 157868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:02,663 DEBUG Processing 358/593 atomic regions from SNP 107232 to 107832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,730 DEBUG Processing 526/656 atomic regions from SNP 157568 to 158168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:02,734 DEBUG Processing 64/556 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:02,843 DEBUG Processing 359/593 atomic regions from SNP 107532 to 108132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:02,920 DEBUG Processing 527/656 atomic regions from SNP 157868 to 158468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:02,936 DEBUG Processing 65/556 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,108 DEBUG Processing 360/593 atomic regions from SNP 107832 to 108432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,116 DEBUG Processing 528/656 atomic regions from SNP 158168 to 158768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:03,135 DEBUG Processing 66/556 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,292 DEBUG Processing 361/593 atomic regions from SNP 108132 to 108732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,315 DEBUG Processing 529/656 atomic regions from SNP 158468 to 159068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:03,341 DEBUG Processing 67/556 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,476 DEBUG Processing 362/593 atomic regions from SNP 108432 to 109032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,524 DEBUG Processing 530/656 atomic regions from SNP 158768 to 159368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:03,551 DEBUG Processing 68/556 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,661 DEBUG Processing 363/593 atomic regions from SNP 108732 to 109332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,730 DEBUG Processing 69/556 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:03,742 DEBUG Processing 531/656 atomic regions from SNP 159068 to 159668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:03,899 DEBUG Processing 364/593 atomic regions from SNP 109032 to 109632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:03,954 DEBUG Processing 70/556 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,000 DEBUG Processing 532/656 atomic regions from SNP 159368 to 159968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:04,092 DEBUG Processing 365/593 atomic regions from SNP 109332 to 109932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,144 DEBUG Processing 71/556 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,214 DEBUG Processing 533/656 atomic regions from SNP 159668 to 160268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:04,277 DEBUG Processing 366/593 atomic regions from SNP 109632 to 110232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,325 DEBUG Processing 72/556 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,431 DEBUG Processing 534/656 atomic regions from SNP 159968 to 160568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:04,457 DEBUG Processing 367/593 atomic regions from SNP 109932 to 110532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,505 DEBUG Processing 73/556 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,636 DEBUG Processing 368/593 atomic regions from SNP 110232 to 110832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,658 DEBUG Processing 535/656 atomic regions from SNP 160268 to 160868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:04,685 DEBUG Processing 74/556 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,825 DEBUG Processing 369/593 atomic regions from SNP 110532 to 111132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:04,863 DEBUG Processing 75/556 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:04,867 DEBUG Processing 536/656 atomic regions from SNP 160568 to 161168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:05,044 DEBUG Processing 370/593 atomic regions from SNP 110832 to 111432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,107 DEBUG Processing 76/556 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,132 DEBUG Processing 537/656 atomic regions from SNP 160868 to 161468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:05,345 DEBUG Processing 371/593 atomic regions from SNP 111132 to 111732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,374 DEBUG Processing 77/556 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,433 DEBUG Processing 538/656 atomic regions from SNP 161168 to 161768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:05,535 DEBUG Processing 372/593 atomic regions from SNP 111432 to 112032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,564 DEBUG Processing 78/556 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,652 DEBUG Processing 539/656 atomic regions from SNP 161468 to 162068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:05,716 DEBUG Processing 373/593 atomic regions from SNP 111732 to 112332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,745 DEBUG Processing 79/556 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:05,878 DEBUG Processing 540/656 atomic regions from SNP 161768 to 162368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:05,897 DEBUG Processing 374/593 atomic regions from SNP 112032 to 112632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:05,925 DEBUG Processing 80/556 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,098 DEBUG Processing 375/593 atomic regions from SNP 112332 to 112932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,109 DEBUG Processing 541/656 atomic regions from SNP 162068 to 162668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:06,134 DEBUG Processing 81/556 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,366 DEBUG Processing 376/593 atomic regions from SNP 112632 to 113232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,396 DEBUG Processing 82/556 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,409 DEBUG Processing 542/656 atomic regions from SNP 162368 to 162968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:06,546 DEBUG Processing 377/593 atomic regions from SNP 112932 to 113532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,609 DEBUG Processing 83/556 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,611 DEBUG Processing 543/656 atomic regions from SNP 162668 to 163268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:06,721 DEBUG Processing 378/593 atomic regions from SNP 113232 to 113832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:06,817 DEBUG Processing 84/556 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:06,818 DEBUG Processing 544/656 atomic regions from SNP 162968 to 163568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:06,897 DEBUG Processing 379/593 atomic regions from SNP 113532 to 114132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,015 DEBUG Processing 85/556 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,044 DEBUG Processing 545/656 atomic regions from SNP 163268 to 163868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:07,074 DEBUG Processing 380/593 atomic regions from SNP 113832 to 114432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,256 DEBUG Processing 86/556 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,281 DEBUG Processing 381/593 atomic regions from SNP 114132 to 114732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,289 DEBUG Processing 546/656 atomic regions from SNP 163568 to 164168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:07,557 DEBUG Processing 87/556 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,570 DEBUG Processing 382/593 atomic regions from SNP 114432 to 115032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,589 DEBUG Processing 547/656 atomic regions from SNP 163868 to 164468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:07,755 DEBUG Processing 383/593 atomic regions from SNP 114732 to 115332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,768 DEBUG Processing 88/556 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,793 DEBUG Processing 548/656 atomic regions from SNP 164168 to 164768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:07,931 DEBUG Processing 384/593 atomic regions from SNP 115032 to 115632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:07,976 DEBUG Processing 89/556 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:07,986 DEBUG Processing 549/656 atomic regions from SNP 164468 to 165068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:08,105 DEBUG Processing 385/593 atomic regions from SNP 115332 to 115932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,203 DEBUG Processing 90/556 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:08,232 DEBUG Processing 550/656 atomic regions from SNP 164768 to 165368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:08,279 DEBUG Processing 386/593 atomic regions from SNP 115632 to 116232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,413 DEBUG Processing 91/556 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:08,456 DEBUG Processing 551/656 atomic regions from SNP 165068 to 165668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:08,457 DEBUG Processing 387/593 atomic regions from SNP 115932 to 116532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,618 DEBUG Processing 92/556 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:08,633 DEBUG Processing 388/593 atomic regions from SNP 116232 to 116832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,655 DEBUG Processing 552/656 atomic regions from SNP 165368 to 165968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:08,809 DEBUG Processing 389/593 atomic regions from SNP 116532 to 117132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:08,816 DEBUG Processing 93/556 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:08,881 DEBUG Processing 553/656 atomic regions from SNP 165668 to 166268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:08,991 DEBUG Processing 390/593 atomic regions from SNP 116832 to 117432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,019 DEBUG Processing 94/556 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:09,104 DEBUG Processing 554/656 atomic regions from SNP 165968 to 166568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:09,174 DEBUG Processing 391/593 atomic regions from SNP 117132 to 117732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,203 DEBUG Processing 95/556 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:09,340 DEBUG Processing 555/656 atomic regions from SNP 166268 to 166868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:09,356 DEBUG Processing 392/593 atomic regions from SNP 117432 to 118032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,382 DEBUG Processing 96/556 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:09,541 DEBUG Processing 393/593 atomic regions from SNP 117732 to 118332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,549 DEBUG Processing 556/656 atomic regions from SNP 166568 to 167168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:09,564 DEBUG Processing 97/556 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:09,722 DEBUG Processing 394/593 atomic regions from SNP 118032 to 118632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,745 DEBUG Processing 557/656 atomic regions from SNP 166868 to 167468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:09,745 DEBUG Processing 98/556 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:09,910 DEBUG Processing 395/593 atomic regions from SNP 118332 to 118932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:09,934 DEBUG Processing 99/556 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:09,945 DEBUG Processing 558/656 atomic regions from SNP 167168 to 167768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:10,097 DEBUG Processing 396/593 atomic regions from SNP 118632 to 119232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:10,119 DEBUG Processing 100/556 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:10,183 DEBUG Processing 559/656 atomic regions from SNP 167468 to 168068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:10,366 DEBUG Processing 397/593 atomic regions from SNP 118932 to 119532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:10,425 DEBUG Processing 101/556 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:10,502 DEBUG Processing 560/656 atomic regions from SNP 167768 to 168368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:10,637 DEBUG Processing 398/593 atomic regions from SNP 119232 to 119832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:10,693 DEBUG Processing 102/556 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:10,807 DEBUG Processing 561/656 atomic regions from SNP 168068 to 168668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:10,931 DEBUG Processing 399/593 atomic regions from SNP 119532 to 120132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,021 DEBUG Processing 103/556 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:11,108 DEBUG Processing 562/656 atomic regions from SNP 168368 to 168968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:11,230 DEBUG Processing 400/593 atomic regions from SNP 119832 to 120432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,355 DEBUG Processing 104/556 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:11,399 DEBUG Processing 563/656 atomic regions from SNP 168668 to 169268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:11,506 DEBUG Processing 401/593 atomic regions from SNP 120132 to 120732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,666 DEBUG Processing 105/556 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:11,709 DEBUG Processing 564/656 atomic regions from SNP 168968 to 169568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:11,785 DEBUG Processing 402/593 atomic regions from SNP 120432 to 121032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:11,944 DEBUG Processing 106/556 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:12,013 DEBUG Processing 565/656 atomic regions from SNP 169268 to 169868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:12,048 DEBUG Processing 403/593 atomic regions from SNP 120732 to 121332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,191 DEBUG Processing 107/556 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:12,291 DEBUG Processing 566/656 atomic regions from SNP 169568 to 170168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:12,304 DEBUG Processing 404/593 atomic regions from SNP 121032 to 121632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,475 DEBUG Processing 108/556 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:12,568 DEBUG Processing 567/656 atomic regions from SNP 169868 to 170468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:12,589 DEBUG Processing 405/593 atomic regions from SNP 121332 to 121932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,689 DEBUG Processing 109/556 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:12,808 DEBUG Processing 406/593 atomic regions from SNP 121632 to 122232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:12,810 DEBUG Processing 568/656 atomic regions from SNP 170168 to 170768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:12,881 DEBUG Processing 110/556 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:13,001 DEBUG Processing 407/593 atomic regions from SNP 121932 to 122532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,056 DEBUG Processing 569/656 atomic regions from SNP 170468 to 171068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:13,096 DEBUG Processing 111/556 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:13,193 DEBUG Processing 408/593 atomic regions from SNP 122232 to 122832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,257 DEBUG Processing 570/656 atomic regions from SNP 170768 to 171368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:13,295 DEBUG Processing 112/556 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:13,402 DEBUG Processing 409/593 atomic regions from SNP 122532 to 123132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,454 DEBUG Processing 571/656 atomic regions from SNP 171068 to 171668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:13,475 DEBUG Processing 113/556 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:13,589 DEBUG Processing 410/593 atomic regions from SNP 122832 to 123432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,654 DEBUG Processing 114/556 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:13,667 DEBUG Processing 572/656 atomic regions from SNP 171368 to 171968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:13,767 DEBUG Processing 411/593 atomic regions from SNP 123132 to 123732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:13,869 DEBUG Processing 115/556 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:13,944 DEBUG Processing 573/656 atomic regions from SNP 171668 to 172268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:14,020 DEBUG Processing 412/593 atomic regions from SNP 123432 to 124032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,134 DEBUG Processing 116/556 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:14,244 DEBUG Processing 413/593 atomic regions from SNP 123732 to 124332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,257 DEBUG Processing 574/656 atomic regions from SNP 171968 to 172568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:14,355 DEBUG Processing 117/556 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:14,447 DEBUG Processing 414/593 atomic regions from SNP 124032 to 124632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,547 DEBUG Processing 575/656 atomic regions from SNP 172268 to 172868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:14,634 DEBUG Processing 118/556 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:14,747 DEBUG Processing 415/593 atomic regions from SNP 124332 to 124932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:14,850 DEBUG Processing 576/656 atomic regions from SNP 172568 to 173168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:14,944 DEBUG Processing 119/556 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:15,050 DEBUG Processing 416/593 atomic regions from SNP 124632 to 125232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:15,161 DEBUG Processing 577/656 atomic regions from SNP 172868 to 173468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:15,228 DEBUG Processing 120/556 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:15,342 DEBUG Processing 417/593 atomic regions from SNP 124932 to 125532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:15,468 DEBUG Processing 578/656 atomic regions from SNP 173168 to 173768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:15,509 DEBUG Processing 121/556 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:15,616 DEBUG Processing 418/593 atomic regions from SNP 125232 to 125832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:15,681 DEBUG Processing 579/656 atomic regions from SNP 173468 to 174068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:15,709 DEBUG Processing 122/556 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:15,902 DEBUG Processing 419/593 atomic regions from SNP 125532 to 126132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:15,964 DEBUG Processing 123/556 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:15,965 DEBUG Processing 580/656 atomic regions from SNP 173768 to 174368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:16,141 DEBUG Processing 420/593 atomic regions from SNP 125832 to 126432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:16,244 DEBUG Processing 124/556 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:16,265 DEBUG Processing 581/656 atomic regions from SNP 174068 to 174668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:16,430 DEBUG Processing 421/593 atomic regions from SNP 126132 to 126732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:16,469 DEBUG Processing 125/556 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:16,534 DEBUG Processing 582/656 atomic regions from SNP 174368 to 174968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:16,731 DEBUG Processing 422/593 atomic regions from SNP 126432 to 127032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:16,731 DEBUG Processing 126/556 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:16,793 DEBUG Processing 583/656 atomic regions from SNP 174668 to 175268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:16,997 DEBUG Processing 127/556 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:17,039 DEBUG Processing 423/593 atomic regions from SNP 126732 to 127332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:17,072 DEBUG Processing 584/656 atomic regions from SNP 174968 to 175568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:17,262 DEBUG Processing 128/556 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:17,344 DEBUG Processing 424/593 atomic regions from SNP 127032 to 127632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:17,363 DEBUG Processing 585/656 atomic regions from SNP 175268 to 175868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:17,522 DEBUG Processing 129/556 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:17,643 DEBUG Processing 425/593 atomic regions from SNP 127332 to 127932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:17,646 DEBUG Processing 586/656 atomic regions from SNP 175568 to 176168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:17,781 DEBUG Processing 130/556 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:17,944 DEBUG Processing 587/656 atomic regions from SNP 175868 to 176468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:17,959 DEBUG Processing 426/593 atomic regions from SNP 127632 to 128232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:18,038 DEBUG Processing 131/556 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:18,255 DEBUG Processing 588/656 atomic regions from SNP 176168 to 176768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:18,272 DEBUG Processing 427/593 atomic regions from SNP 127932 to 128532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:18,309 DEBUG Processing 132/556 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:18,571 DEBUG Processing 589/656 atomic regions from SNP 176468 to 177068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:18,581 DEBUG Processing 133/556 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:18,585 DEBUG Processing 428/593 atomic regions from SNP 128232 to 128832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:18,855 DEBUG Processing 134/556 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:18,866 DEBUG Processing 590/656 atomic regions from SNP 176768 to 177368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:18,892 DEBUG Processing 429/593 atomic regions from SNP 128532 to 129132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:19,134 DEBUG Processing 135/556 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:19,166 DEBUG Processing 591/656 atomic regions from SNP 177068 to 177668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:19,176 DEBUG Processing 430/593 atomic regions from SNP 128832 to 129432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:19,414 DEBUG Processing 136/556 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:19,485 DEBUG Processing 431/593 atomic regions from SNP 129132 to 129732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:19,494 DEBUG Processing 592/656 atomic regions from SNP 177368 to 177968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:19,708 DEBUG Processing 137/556 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:19,806 DEBUG Processing 432/593 atomic regions from SNP 129432 to 130032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:19,831 DEBUG Processing 593/656 atomic regions from SNP 177668 to 178268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:19,973 DEBUG Processing 138/556 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:20,057 DEBUG Processing 433/593 atomic regions from SNP 129732 to 130332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:20,079 DEBUG Processing 594/656 atomic regions from SNP 177968 to 178568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:20,164 DEBUG Processing 139/556 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:20,286 DEBUG Processing 434/593 atomic regions from SNP 130032 to 130632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:20,290 DEBUG Processing 595/656 atomic regions from SNP 178268 to 178868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:20,349 DEBUG Processing 140/556 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:20,540 DEBUG Processing 435/593 atomic regions from SNP 130332 to 130932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:20,549 DEBUG Processing 596/656 atomic regions from SNP 178568 to 179168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:20,605 DEBUG Processing 141/556 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:20,767 DEBUG Processing 597/656 atomic regions from SNP 178868 to 179468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:20,770 DEBUG Processing 436/593 atomic regions from SNP 130632 to 131232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:20,828 DEBUG Processing 142/556 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:21,017 DEBUG Processing 598/656 atomic regions from SNP 179168 to 179768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:21,041 DEBUG Processing 437/593 atomic regions from SNP 130932 to 131532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:21,054 DEBUG Processing 143/556 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:21,287 DEBUG Processing 599/656 atomic regions from SNP 179468 to 180068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:21,302 DEBUG Processing 144/556 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:21,325 DEBUG Processing 438/593 atomic regions from SNP 131232 to 131832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:21,574 DEBUG Processing 600/656 atomic regions from SNP 179768 to 180368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:21,589 DEBUG Processing 145/556 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:21,639 DEBUG Processing 439/593 atomic regions from SNP 131532 to 132132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:21,865 DEBUG Processing 146/556 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:21,868 DEBUG Processing 601/656 atomic regions from SNP 180068 to 180668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:21,935 DEBUG Processing 440/593 atomic regions from SNP 131832 to 132432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:22,136 DEBUG Processing 147/556 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:22,182 DEBUG Processing 602/656 atomic regions from SNP 180368 to 180968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:22,252 DEBUG Processing 441/593 atomic regions from SNP 132132 to 132732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:22,408 DEBUG Processing 148/556 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:22,511 DEBUG Processing 603/656 atomic regions from SNP 180668 to 181268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:22,559 DEBUG Processing 442/593 atomic regions from SNP 132432 to 133032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:22,653 DEBUG Processing 149/556 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:22,813 DEBUG Processing 604/656 atomic regions from SNP 180968 to 181568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:22,819 DEBUG Processing 443/593 atomic regions from SNP 132732 to 133332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:22,894 DEBUG Processing 150/556 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:23,081 DEBUG Processing 444/593 atomic regions from SNP 133032 to 133632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:23,100 DEBUG Processing 605/656 atomic regions from SNP 181268 to 181868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:23,128 DEBUG Processing 151/556 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:23,378 DEBUG Processing 445/593 atomic regions from SNP 133332 to 133932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:23,397 DEBUG Processing 152/556 atomic regions from SNP 45451 to 46051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:23,414 DEBUG Processing 606/656 atomic regions from SNP 181568 to 182168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:23,668 DEBUG Processing 153/556 atomic regions from SNP 45751 to 46351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:23,685 DEBUG Processing 446/593 atomic regions from SNP 133632 to 134232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:23,740 DEBUG Processing 607/656 atomic regions from SNP 181868 to 182468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:23,929 DEBUG Processing 154/556 atomic regions from SNP 46051 to 46651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:23,994 DEBUG Processing 447/593 atomic regions from SNP 133932 to 134532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:24,078 DEBUG Processing 608/656 atomic regions from SNP 182168 to 182768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:24,171 DEBUG Processing 155/556 atomic regions from SNP 46351 to 46951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:24,241 DEBUG Processing 448/593 atomic regions from SNP 134232 to 134832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:24,350 DEBUG Processing 609/656 atomic regions from SNP 182468 to 183068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:24,426 DEBUG Processing 156/556 atomic regions from SNP 46651 to 47251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:24,545 DEBUG Processing 449/593 atomic regions from SNP 134532 to 135132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:24,673 DEBUG Processing 610/656 atomic regions from SNP 182768 to 183368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:24,685 DEBUG Processing 157/556 atomic regions from SNP 46951 to 47551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:24,842 DEBUG Processing 450/593 atomic regions from SNP 134832 to 135432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:24,956 DEBUG Processing 158/556 atomic regions from SNP 47251 to 47851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:25,003 DEBUG Processing 611/656 atomic regions from SNP 183068 to 183668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:25,134 DEBUG Processing 451/593 atomic regions from SNP 135132 to 135732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:25,229 DEBUG Processing 159/556 atomic regions from SNP 47551 to 48151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:25,328 DEBUG Processing 612/656 atomic regions from SNP 183368 to 183968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:25,448 DEBUG Processing 452/593 atomic regions from SNP 135432 to 136032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:25,495 DEBUG Processing 160/556 atomic regions from SNP 47851 to 48451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:25,654 DEBUG Processing 613/656 atomic regions from SNP 183668 to 184268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:25,744 DEBUG Processing 453/593 atomic regions from SNP 135732 to 136332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:25,757 DEBUG Processing 161/556 atomic regions from SNP 48151 to 48751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:25,980 DEBUG Processing 614/656 atomic regions from SNP 183968 to 184568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:26,019 DEBUG Processing 162/556 atomic regions from SNP 48451 to 49051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:26,032 DEBUG Processing 454/593 atomic regions from SNP 136032 to 136632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:26,260 DEBUG Processing 615/656 atomic regions from SNP 184268 to 184868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:26,294 DEBUG Processing 455/593 atomic regions from SNP 136332 to 136932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:26,297 DEBUG Processing 163/556 atomic regions from SNP 48751 to 49351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:26,540 DEBUG Processing 616/656 atomic regions from SNP 184568 to 185168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:26,540 DEBUG Processing 164/556 atomic regions from SNP 49051 to 49651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:26,549 DEBUG Processing 456/593 atomic regions from SNP 136632 to 137232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:26,789 DEBUG Processing 165/556 atomic regions from SNP 49351 to 49951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:26,853 DEBUG Processing 457/593 atomic regions from SNP 136932 to 137532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:26,868 DEBUG Processing 617/656 atomic regions from SNP 184868 to 185468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:27,067 DEBUG Processing 166/556 atomic regions from SNP 49651 to 50251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:27,164 DEBUG Processing 458/593 atomic regions from SNP 137232 to 137832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:27,197 DEBUG Processing 618/656 atomic regions from SNP 185168 to 185768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:27,351 DEBUG Processing 167/556 atomic regions from SNP 49951 to 50551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:27,473 DEBUG Processing 459/593 atomic regions from SNP 137532 to 138132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:27,532 DEBUG Processing 619/656 atomic regions from SNP 185468 to 186068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:27,646 DEBUG Processing 168/556 atomic regions from SNP 50251 to 50851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:27,782 DEBUG Processing 460/593 atomic regions from SNP 137832 to 138432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:27,857 DEBUG Processing 620/656 atomic regions from SNP 185768 to 186368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:27,953 DEBUG Processing 169/556 atomic regions from SNP 50551 to 51151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:28,086 DEBUG Processing 461/593 atomic regions from SNP 138132 to 138732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:28,153 DEBUG Processing 621/656 atomic regions from SNP 186068 to 186668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:28,229 DEBUG Processing 170/556 atomic regions from SNP 50851 to 51451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:28,381 DEBUG Processing 462/593 atomic regions from SNP 138432 to 139032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:28,436 DEBUG Processing 622/656 atomic regions from SNP 186368 to 186968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:28,501 DEBUG Processing 171/556 atomic regions from SNP 51151 to 51751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:28,664 DEBUG Processing 463/593 atomic regions from SNP 138732 to 139332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:28,723 DEBUG Processing 623/656 atomic regions from SNP 186668 to 187268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:28,793 DEBUG Processing 172/556 atomic regions from SNP 51451 to 52051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:28,941 DEBUG Processing 464/593 atomic regions from SNP 139032 to 139632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:29,035 DEBUG Processing 624/656 atomic regions from SNP 186968 to 187568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:29,092 DEBUG Processing 173/556 atomic regions from SNP 51751 to 52351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:29,211 DEBUG Processing 465/593 atomic regions from SNP 139332 to 139932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:29,316 DEBUG Processing 625/656 atomic regions from SNP 187268 to 187868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:29,381 DEBUG Processing 174/556 atomic regions from SNP 52051 to 52651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:29,508 DEBUG Processing 466/593 atomic regions from SNP 139632 to 140232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:29,601 DEBUG Processing 626/656 atomic regions from SNP 187568 to 188168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:29,688 DEBUG Processing 175/556 atomic regions from SNP 52351 to 52951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:29,789 DEBUG Processing 467/593 atomic regions from SNP 139932 to 140532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:29,876 DEBUG Processing 627/656 atomic regions from SNP 187868 to 188468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:29,949 DEBUG Processing 176/556 atomic regions from SNP 52651 to 53251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:30,054 DEBUG Processing 468/593 atomic regions from SNP 140232 to 140832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:30,179 DEBUG Processing 628/656 atomic regions from SNP 188168 to 188768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:30,258 DEBUG Processing 177/556 atomic regions from SNP 52951 to 53551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:30,330 DEBUG Subchromosome time: 230.6090087853372, subchromosome SNPs: 211041 2025-01-31 10:00:30,331 DEBUG Estimated BADs: [23.25, 4.65, 0.77, 0.23, 1.16, 0.23, 1.16, 0.29, 2.32, 0.39, 2.32, 1.16, 0.33, 1.16, 0.33, 18.60, 2.32, 6.97, 2.32, 0.77, 4.65, 1.16, 16.27, 6.97, 0.33, 2.32, 4.65, 0.29, 2.32, 9.30, 4.65, 2.32, 1.16, 4.65, 1.16, 0.26, 1.16, 4.65, 6.97, 1.16, 6.97, 4.65, 2.32, 0.46, 1.16, 6.97, 2.32] SNP counts: [148, 6452, 4328, 2982, 2437, 5706, 1748, 3376, 8739, 8599, 8552, 3917, 9858, 8684, 2368, 199, 4536, 1021, 6581, 3421, 10109, 10405, 2138, 1985, 428, 1830, 1734, 945, 1474, 1566, 7474, 2997, 2590, 12418, 2251, 4334, 1392, 4954, 5058, 1323, 4698, 10477, 3907, 3294, 4960, 11257, 1391] SNP IDs counts: [148, 6452, 4328, 2982, 2437, 5706, 1748, 3376, 8739, 8599, 8552, 3917, 9858, 8684, 2368, 199, 4536, 1021, 6581, 3421, 10109, 10405, 2138, 1985, 428, 1830, 1734, 945, 1474, 1566, 7474, 2997, 2590, 12418, 2251, 4334, 1392, 4954, 5058, 1323, 4698, 10477, 3907, 3294, 4960, 11257, 1391] Critical gap: 594370bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.71Mbp, 9.26Mbp, 11.15Mbp, 12.56Mbp, 16.26Mbp, 17.29Mbp, 19.33Mbp, 24.22Mbp, 29.51Mbp, 34.28Mbp, 36.55Mbp, 42.42Mbp, 47.33Mbp, 48.77Mbp, 48.88Mbp, 51.53Mbp, 52.07Mbp, 55.66Mbp, 57.62Mbp, 63.16Mbp, 68.89Mbp, 70.02Mbp, 71.10Mbp, 71.39Mbp, 72.39Mbp, 73.31Mbp, 73.95Mbp, 74.83Mbp, 75.68Mbp, 79.69Mbp, 81.32Mbp, 82.75Mbp, 89.51Mbp, 90.75Mbp, 93.35Mbp, 94.13Mbp, 96.77Mbp, 99.47Mbp, 100.25Mbp, 102.75Mbp, 108.47Mbp, 110.60Mbp, 112.46Mbp, 115.15Mbp, 121.20Mbp, 122.08Mbp] 2025-01-31 10:00:30,331 DEBUG chr11 time: 230.60960454121232 s 2025-01-31 10:00:30,354 DEBUG Processing 469/593 atomic regions from SNP 140532 to 141132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:30,470 DEBUG Processing 629/656 atomic regions from SNP 188468 to 189068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:30,511 DEBUG chr11: Fitting background model for 47 segments 2025-01-31 10:00:30,568 DEBUG Processing 178/556 atomic regions from SNP 53251 to 53851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:30,656 DEBUG Processing 470/593 atomic regions from SNP 140832 to 141432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:30,769 DEBUG Processing 630/656 atomic regions from SNP 188768 to 189368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:30,856 DEBUG Processing 179/556 atomic regions from SNP 53551 to 54151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:30,935 DEBUG Processing 471/593 atomic regions from SNP 141132 to 141732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:31,066 DEBUG Processing 631/656 atomic regions from SNP 189068 to 189668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:31,148 DEBUG Processing 180/556 atomic regions from SNP 53851 to 54451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:31,214 DEBUG Processing 472/593 atomic regions from SNP 141432 to 142032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:31,369 DEBUG Processing 632/656 atomic regions from SNP 189368 to 189968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:31,434 DEBUG Processing 181/556 atomic regions from SNP 54151 to 54751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:31,498 DEBUG Processing 473/593 atomic regions from SNP 141732 to 142332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:31,667 DEBUG Processing 633/656 atomic regions from SNP 189668 to 190268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:31,694 DEBUG Processing 182/556 atomic regions from SNP 54451 to 55051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:31,807 DEBUG Processing 474/593 atomic regions from SNP 142032 to 142632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:31,976 DEBUG Processing 183/556 atomic regions from SNP 54751 to 55351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:31,992 DEBUG Processing 634/656 atomic regions from SNP 189968 to 190568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:32,126 DEBUG Processing 475/593 atomic regions from SNP 142332 to 142932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:32,253 DEBUG Processing 184/556 atomic regions from SNP 55051 to 55651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:32,306 DEBUG Processing 635/656 atomic regions from SNP 190268 to 190868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:32,422 DEBUG Processing 476/593 atomic regions from SNP 142632 to 143232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:32,555 DEBUG Processing 185/556 atomic regions from SNP 55351 to 55951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:32,632 DEBUG Processing 636/656 atomic regions from SNP 190568 to 191168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:32,731 DEBUG Processing 477/593 atomic regions from SNP 142932 to 143532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:32,833 DEBUG Processing 186/556 atomic regions from SNP 55651 to 56251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:32,936 DEBUG Processing 637/656 atomic regions from SNP 190868 to 191468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:33,042 DEBUG Processing 478/593 atomic regions from SNP 143232 to 143832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:33,103 DEBUG Processing 187/556 atomic regions from SNP 55951 to 56551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:33,245 DEBUG Processing 638/656 atomic regions from SNP 191168 to 191768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:33,335 DEBUG Processing 479/593 atomic regions from SNP 143532 to 144132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:33,371 DEBUG Processing 188/556 atomic regions from SNP 56251 to 56851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:33,547 DEBUG Processing 639/656 atomic regions from SNP 191468 to 192068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:33,621 DEBUG Processing 480/593 atomic regions from SNP 143832 to 144432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:33,640 DEBUG Processing 189/556 atomic regions from SNP 56551 to 57151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:33,855 DEBUG Processing 640/656 atomic regions from SNP 191768 to 192368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:33,900 DEBUG Processing 481/593 atomic regions from SNP 144132 to 144732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:33,913 DEBUG Processing 190/556 atomic regions from SNP 56851 to 57451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:34,170 DEBUG Processing 641/656 atomic regions from SNP 192068 to 192668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:34,191 DEBUG Processing 482/593 atomic regions from SNP 144432 to 145032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:34,195 DEBUG Processing 191/556 atomic regions from SNP 57151 to 57751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:34,466 DEBUG Processing 192/556 atomic regions from SNP 57451 to 58051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:34,488 DEBUG Processing 483/593 atomic regions from SNP 144732 to 145332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:34,496 DEBUG Processing 642/656 atomic regions from SNP 192368 to 192968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:34,754 DEBUG Processing 193/556 atomic regions from SNP 57751 to 58351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:34,775 DEBUG Processing 484/593 atomic regions from SNP 145032 to 145632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:34,786 DEBUG Processing 643/656 atomic regions from SNP 192668 to 193268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:35,035 DEBUG Processing 194/556 atomic regions from SNP 58051 to 58651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:35,076 DEBUG Processing 485/593 atomic regions from SNP 145332 to 145932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:35,112 DEBUG Processing 644/656 atomic regions from SNP 192968 to 193568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:35,306 DEBUG Processing 195/556 atomic regions from SNP 58351 to 58951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:35,328 DEBUG Processing 486/593 atomic regions from SNP 145632 to 146232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:35,396 DEBUG Processing 645/656 atomic regions from SNP 193268 to 193868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:35,613 DEBUG Processing 196/556 atomic regions from SNP 58651 to 59251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:35,614 DEBUG Processing 487/593 atomic regions from SNP 145932 to 146532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:35,692 DEBUG Processing 646/656 atomic regions from SNP 193568 to 194168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:35,904 DEBUG Processing 488/593 atomic regions from SNP 146232 to 146832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:35,934 DEBUG Processing 197/556 atomic regions from SNP 58951 to 59551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:36,026 DEBUG Processing 647/656 atomic regions from SNP 193868 to 194468 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:36,166 DEBUG Processing 489/593 atomic regions from SNP 146532 to 147132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:36,213 DEBUG Processing 198/556 atomic regions from SNP 59251 to 59851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:36,349 DEBUG Processing 648/656 atomic regions from SNP 194168 to 194768 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:36,429 DEBUG Processing 490/593 atomic regions from SNP 146832 to 147432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:36,479 DEBUG Processing 199/556 atomic regions from SNP 59551 to 60151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:36,660 DEBUG Processing 649/656 atomic regions from SNP 194468 to 195068 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:36,675 DEBUG Processing 491/593 atomic regions from SNP 147132 to 147732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:36,705 DEBUG Processing 200/556 atomic regions from SNP 59851 to 60451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:36,929 DEBUG Processing 650/656 atomic regions from SNP 194768 to 195368 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:36,929 DEBUG Processing 492/593 atomic regions from SNP 147432 to 148032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:36,967 DEBUG Processing 201/556 atomic regions from SNP 60151 to 60751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:37,185 DEBUG Processing 493/593 atomic regions from SNP 147732 to 148332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:37,207 DEBUG Processing 651/656 atomic regions from SNP 195068 to 195668 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:37,217 DEBUG Processing 202/556 atomic regions from SNP 60451 to 61051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:37,376 DEBUG Processing 494/593 atomic regions from SNP 148032 to 148632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:37,438 DEBUG Processing 203/556 atomic regions from SNP 60751 to 61351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:37,453 DEBUG Processing 652/656 atomic regions from SNP 195368 to 195968 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:37,563 DEBUG Processing 495/593 atomic regions from SNP 148332 to 148932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:37,653 DEBUG Processing 204/556 atomic regions from SNP 61051 to 61651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:37,694 DEBUG Processing 653/656 atomic regions from SNP 195668 to 196268 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:37,754 DEBUG Processing 496/593 atomic regions from SNP 148632 to 149232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:37,834 DEBUG Processing 205/556 atomic regions from SNP 61351 to 61951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:37,909 DEBUG Processing 654/656 atomic regions from SNP 195968 to 196568 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:37,943 DEBUG Processing 497/593 atomic regions from SNP 148932 to 149532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:38,019 DEBUG Processing 206/556 atomic regions from SNP 61651 to 62251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:38,170 DEBUG Processing 498/593 atomic regions from SNP 149232 to 149832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:38,179 DEBUG Processing 655/656 atomic regions from SNP 196268 to 196868 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:38,246 DEBUG Processing 207/556 atomic regions from SNP 61951 to 62551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:38,399 DEBUG Processing 499/593 atomic regions from SNP 149532 to 150132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:38,443 DEBUG Processing 656/656 atomic regions from SNP 196568 to 197168 for chr12 (subchromosome 1 of 1). 2025-01-31 10:00:38,510 DEBUG Processing 208/556 atomic regions from SNP 62251 to 62851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:38,580 DEBUG Unique SNPs positions in subchromosome 1: 197169 2025-01-31 10:00:38,592 DEBUG Processing 500/593 atomic regions from SNP 149832 to 150432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:38,739 DEBUG Processing 209/556 atomic regions from SNP 62551 to 63151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:38,836 DEBUG Processing 501/593 atomic regions from SNP 150132 to 150732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:38,951 DEBUG Processing 210/556 atomic regions from SNP 62851 to 63451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:39,099 DEBUG Processing 502/593 atomic regions from SNP 150432 to 151032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:39,204 DEBUG Processing 211/556 atomic regions from SNP 63151 to 63751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:39,407 DEBUG Processing 503/593 atomic regions from SNP 150732 to 151332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:39,508 DEBUG Processing 212/556 atomic regions from SNP 63451 to 64051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:39,704 DEBUG Processing 504/593 atomic regions from SNP 151032 to 151632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:39,807 DEBUG Processing 213/556 atomic regions from SNP 63751 to 64351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:40,022 DEBUG Processing 505/593 atomic regions from SNP 151332 to 151932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:40,101 DEBUG Processing 214/556 atomic regions from SNP 64051 to 64651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:40,325 DEBUG Processing 506/593 atomic regions from SNP 151632 to 152232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:40,381 DEBUG Processing 215/556 atomic regions from SNP 64351 to 64951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:40,600 DEBUG Processing 507/593 atomic regions from SNP 151932 to 152532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:40,639 DEBUG Processing 216/556 atomic regions from SNP 64651 to 65251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:40,826 DEBUG Processing 508/593 atomic regions from SNP 152232 to 152832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:40,867 DEBUG Processing 217/556 atomic regions from SNP 64951 to 65551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:41,096 DEBUG Processing 509/593 atomic regions from SNP 152532 to 153132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:41,134 DEBUG Processing 218/556 atomic regions from SNP 65251 to 65851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:41,360 DEBUG Processing 510/593 atomic regions from SNP 152832 to 153432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:41,394 DEBUG Processing 219/556 atomic regions from SNP 65551 to 66151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:41,629 DEBUG Processing 511/593 atomic regions from SNP 153132 to 153732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:41,666 DEBUG Processing 220/556 atomic regions from SNP 65851 to 66451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:41,914 DEBUG Processing 512/593 atomic regions from SNP 153432 to 154032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:41,929 DEBUG Processing 221/556 atomic regions from SNP 66151 to 66751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:42,195 DEBUG Processing 513/593 atomic regions from SNP 153732 to 154332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:42,205 DEBUG Processing 222/556 atomic regions from SNP 66451 to 67051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:42,469 DEBUG Processing 514/593 atomic regions from SNP 154032 to 154632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:42,471 DEBUG Processing 223/556 atomic regions from SNP 66751 to 67351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:42,736 DEBUG Processing 224/556 atomic regions from SNP 67051 to 67651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:42,743 DEBUG Processing 515/593 atomic regions from SNP 154332 to 154932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:42,944 DEBUG Processing 225/556 atomic regions from SNP 67351 to 67951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:42,953 DEBUG Processing 516/593 atomic regions from SNP 154632 to 155232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:43,208 DEBUG Processing 226/556 atomic regions from SNP 67651 to 68251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:43,215 DEBUG Processing 517/593 atomic regions from SNP 154932 to 155532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:43,417 DEBUG Processing 227/556 atomic regions from SNP 67951 to 68551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:43,437 DEBUG Processing 518/593 atomic regions from SNP 155232 to 155832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:43,670 DEBUG Processing 228/556 atomic regions from SNP 68251 to 68851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:43,686 DEBUG Processing 519/593 atomic regions from SNP 155532 to 156132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:43,916 DEBUG Processing 229/556 atomic regions from SNP 68551 to 69151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:43,935 DEBUG Processing 520/593 atomic regions from SNP 155832 to 156432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:44,176 DEBUG Processing 230/556 atomic regions from SNP 68851 to 69451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:44,196 DEBUG Processing 521/593 atomic regions from SNP 156132 to 156732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:44,433 DEBUG Processing 231/556 atomic regions from SNP 69151 to 69751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:44,457 DEBUG Processing 522/593 atomic regions from SNP 156432 to 157032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:44,701 DEBUG Processing 232/556 atomic regions from SNP 69451 to 70051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:44,719 DEBUG Processing 523/593 atomic regions from SNP 156732 to 157332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:44,973 DEBUG Processing 233/556 atomic regions from SNP 69751 to 70351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:44,983 DEBUG Processing 524/593 atomic regions from SNP 157032 to 157632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:45,309 DEBUG Processing 234/556 atomic regions from SNP 70051 to 70651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:45,318 DEBUG Processing 525/593 atomic regions from SNP 157332 to 157932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:45,640 DEBUG Processing 235/556 atomic regions from SNP 70351 to 70951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:45,649 DEBUG Processing 526/593 atomic regions from SNP 157632 to 158232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:46,012 DEBUG Processing 236/556 atomic regions from SNP 70651 to 71251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:46,021 DEBUG Processing 527/593 atomic regions from SNP 157932 to 158532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:46,357 DEBUG Processing 237/556 atomic regions from SNP 70951 to 71551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:46,366 DEBUG Processing 528/593 atomic regions from SNP 158232 to 158832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:46,634 DEBUG Processing 238/556 atomic regions from SNP 71251 to 71851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:46,647 DEBUG Processing 529/593 atomic regions from SNP 158532 to 159132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:46,939 DEBUG Processing 239/556 atomic regions from SNP 71551 to 72151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:47,003 DEBUG Processing 530/593 atomic regions from SNP 158832 to 159432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:47,200 DEBUG Processing 240/556 atomic regions from SNP 71851 to 72451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:47,261 DEBUG Processing 531/593 atomic regions from SNP 159132 to 159732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:47,418 DEBUG Processing 241/556 atomic regions from SNP 72151 to 72751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:47,476 DEBUG Processing 532/593 atomic regions from SNP 159432 to 160032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:47,608 DEBUG Processing 242/556 atomic regions from SNP 72451 to 73051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:47,672 DEBUG Processing 533/593 atomic regions from SNP 159732 to 160332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:47,858 DEBUG Processing 243/556 atomic regions from SNP 72751 to 73351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:47,946 DEBUG Processing 534/593 atomic regions from SNP 160032 to 160632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:48,058 DEBUG Processing 244/556 atomic regions from SNP 73051 to 73651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:48,213 DEBUG Processing 535/593 atomic regions from SNP 160332 to 160932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:48,326 DEBUG Processing 245/556 atomic regions from SNP 73351 to 73951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:48,346 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 10:00:48,475 DEBUG Processing 536/593 atomic regions from SNP 160632 to 161232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:48,623 DEBUG Processing 246/556 atomic regions from SNP 73651 to 74251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:48,743 DEBUG Processing 537/593 atomic regions from SNP 160932 to 161532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:48,873 DEBUG Processing 247/556 atomic regions from SNP 73951 to 74551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:48,957 DEBUG Processing 538/593 atomic regions from SNP 161232 to 161832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:49,108 DEBUG Processing 248/556 atomic regions from SNP 74251 to 74851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:49,205 DEBUG Processing 539/593 atomic regions from SNP 161532 to 162132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:49,307 DEBUG Processing 249/556 atomic regions from SNP 74551 to 75151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:49,405 DEBUG Processing 540/593 atomic regions from SNP 161832 to 162432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:49,583 DEBUG Processing 250/556 atomic regions from SNP 74851 to 75451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:49,663 DEBUG Processing 541/593 atomic regions from SNP 162132 to 162732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:49,845 DEBUG Processing 251/556 atomic regions from SNP 75151 to 75751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:49,893 DEBUG Processing 542/593 atomic regions from SNP 162432 to 163032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:50,092 DEBUG Processing 252/556 atomic regions from SNP 75451 to 76051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:50,169 DEBUG Processing 543/593 atomic regions from SNP 162732 to 163332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:50,363 DEBUG Processing 253/556 atomic regions from SNP 75751 to 76351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:50,441 DEBUG Processing 544/593 atomic regions from SNP 163032 to 163632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:50,606 DEBUG Processing 254/556 atomic regions from SNP 76051 to 76651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:50,684 DEBUG Processing 545/593 atomic regions from SNP 163332 to 163932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:50,850 DEBUG Processing 255/556 atomic regions from SNP 76351 to 76951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:50,930 DEBUG Processing 546/593 atomic regions from SNP 163632 to 164232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:51,092 DEBUG Processing 256/556 atomic regions from SNP 76651 to 77251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:51,171 DEBUG Processing 547/593 atomic regions from SNP 163932 to 164532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:51,334 DEBUG Processing 257/556 atomic regions from SNP 76951 to 77551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:51,441 DEBUG Processing 548/593 atomic regions from SNP 164232 to 164832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:51,535 DEBUG Processing 258/556 atomic regions from SNP 77251 to 77851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:51,658 DEBUG Processing 549/593 atomic regions from SNP 164532 to 165132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:51,734 DEBUG Processing 259/556 atomic regions from SNP 77551 to 78151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:51,918 DEBUG Processing 550/593 atomic regions from SNP 164832 to 165432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:52,001 DEBUG Processing 260/556 atomic regions from SNP 77851 to 78451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:52,183 DEBUG Processing 551/593 atomic regions from SNP 165132 to 165732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:52,252 DEBUG Processing 261/556 atomic regions from SNP 78151 to 78751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:52,437 DEBUG Processing 552/593 atomic regions from SNP 165432 to 166032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:52,508 DEBUG Processing 262/556 atomic regions from SNP 78451 to 79051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:52,683 DEBUG Processing 553/593 atomic regions from SNP 165732 to 166332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:52,747 DEBUG Processing 263/556 atomic regions from SNP 78751 to 79351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:52,907 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 10:00:52,925 DEBUG Processing 554/593 atomic regions from SNP 166032 to 166632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:52,999 DEBUG Processing 264/556 atomic regions from SNP 79051 to 79651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:53,174 DEBUG Processing 555/593 atomic regions from SNP 166332 to 166932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:53,230 DEBUG Processing 265/556 atomic regions from SNP 79351 to 79951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:53,403 DEBUG Processing 556/593 atomic regions from SNP 166632 to 167232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:53,478 DEBUG Processing 266/556 atomic regions from SNP 79651 to 80251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:53,656 DEBUG Processing 557/593 atomic regions from SNP 166932 to 167532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:53,710 DEBUG Processing 267/556 atomic regions from SNP 79951 to 80551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:53,927 DEBUG Processing 558/593 atomic regions from SNP 167232 to 167832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:53,958 DEBUG Processing 268/556 atomic regions from SNP 80251 to 80851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:54,193 DEBUG Processing 559/593 atomic regions from SNP 167532 to 168132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:54,194 DEBUG Processing 269/556 atomic regions from SNP 80551 to 81151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:54,390 DEBUG Processing 270/556 atomic regions from SNP 80851 to 81451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:54,403 DEBUG Processing 560/593 atomic regions from SNP 167832 to 168432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:54,599 DEBUG Processing 271/556 atomic regions from SNP 81151 to 81751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:54,618 DEBUG Processing 561/593 atomic regions from SNP 168132 to 168732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:54,861 DEBUG Processing 272/556 atomic regions from SNP 81451 to 82051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:54,903 DEBUG Processing 562/593 atomic regions from SNP 168432 to 169032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:55,118 DEBUG Processing 273/556 atomic regions from SNP 81751 to 82351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:55,145 DEBUG Subchromosome time: 201.09958327561617, subchromosome SNPs: 197169 2025-01-31 10:00:55,145 DEBUG Estimated BADs: [3.74, 0.47, 1.87, 0.94, 0.31, 1.87, 9.36, 1.87, 3.74, 0.94, 0.31, 1.87, 0.47, 0.94, 5.62, 1.87, 5.62, 1.87, 0.37, 1.87, 0.62, 7.49, 3.74, 0.94, 7.49, 1.87, 3.74, 5.62, 1.87, 0.37, 1.87, 0.27, 0.94, 3.74, 18.72, 3.74, 1.87, 11.23, 0.62, 1.87] SNP counts: [4312, 2707, 5117, 6902, 2391, 8841, 513, 13059, 2808, 5102, 5097, 3598, 11993, 4727, 1448, 3990, 958, 7799, 6894, 2392, 6023, 1193, 8743, 1836, 2624, 4045, 7086, 8074, 2705, 2103, 2984, 8981, 1926, 11183, 253, 1660, 8303, 5428, 4627, 6744] SNP IDs counts: [4312, 2707, 5117, 6902, 2391, 8841, 513, 13059, 2808, 5102, 5097, 3598, 11993, 4727, 1448, 3990, 958, 7799, 6894, 2392, 6023, 1193, 8743, 1836, 2624, 4045, 7086, 8074, 2705, 2103, 2984, 8981, 1926, 11183, 253, 1660, 8303, 5428, 4627, 6744] Critical gap: 605283bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.42Mbp, 7.02Mbp, 9.90Mbp, 13.93Mbp, 15.40Mbp, 24.56Mbp, 24.83Mbp, 31.94Mbp, 33.48Mbp, 36.40Mbp, 39.40Mbp, 41.39Mbp, 48.89Mbp, 51.69Mbp, 52.50Mbp, 54.65Mbp, 55.39Mbp, 59.84Mbp, 64.14Mbp, 65.55Mbp, 69.12Mbp, 69.76Mbp, 74.46Mbp, 75.50Mbp, 76.90Mbp, 79.17Mbp, 83.01Mbp, 87.27Mbp, 89.21Mbp, 90.38Mbp, 92.08Mbp, 97.63Mbp, 98.73Mbp, 104.93Mbp, 105.06Mbp, 105.94Mbp, 110.37Mbp, 113.22Mbp, 116.24Mbp, 120.13Mbp] 2025-01-31 10:00:55,145 DEBUG chr12 time: 201.10004622489214 s 2025-01-31 10:00:55,193 DEBUG Processing 563/593 atomic regions from SNP 168732 to 169332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:55,306 DEBUG chr12: Fitting background model for 40 segments 2025-01-31 10:00:55,367 DEBUG Processing 274/556 atomic regions from SNP 82051 to 82651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:55,478 DEBUG Processing 564/593 atomic regions from SNP 169032 to 169632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:55,613 DEBUG Processing 275/556 atomic regions from SNP 82351 to 82951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:55,761 DEBUG Processing 565/593 atomic regions from SNP 169332 to 169932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:55,821 DEBUG Processing 276/556 atomic regions from SNP 82651 to 83251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:56,058 DEBUG Processing 566/593 atomic regions from SNP 169632 to 170232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:56,069 DEBUG Processing 277/556 atomic regions from SNP 82951 to 83551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:56,338 DEBUG Processing 278/556 atomic regions from SNP 83251 to 83851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:56,349 DEBUG Processing 567/593 atomic regions from SNP 169932 to 170532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:56,586 DEBUG Processing 279/556 atomic regions from SNP 83551 to 84151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:56,609 DEBUG Processing 568/593 atomic regions from SNP 170232 to 170832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:56,835 DEBUG Processing 280/556 atomic regions from SNP 83851 to 84451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:56,906 DEBUG Processing 569/593 atomic regions from SNP 170532 to 171132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:57,078 DEBUG Processing 281/556 atomic regions from SNP 84151 to 84751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:57,159 DEBUG Processing 570/593 atomic regions from SNP 170832 to 171432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:57,329 DEBUG Processing 282/556 atomic regions from SNP 84451 to 85051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:57,432 DEBUG Processing 571/593 atomic regions from SNP 171132 to 171732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:57,576 DEBUG Processing 283/556 atomic regions from SNP 84751 to 85351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:57,683 DEBUG Processing 572/593 atomic regions from SNP 171432 to 172032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:57,783 DEBUG Processing 284/556 atomic regions from SNP 85051 to 85651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:57,939 DEBUG Processing 573/593 atomic regions from SNP 171732 to 172332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:58,008 DEBUG Processing 285/556 atomic regions from SNP 85351 to 85951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:58,201 DEBUG Processing 574/593 atomic regions from SNP 172032 to 172632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:58,220 DEBUG Processing 286/556 atomic regions from SNP 85651 to 86251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:58,402 DEBUG Processing 287/556 atomic regions from SNP 85951 to 86551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:58,405 DEBUG Processing 575/593 atomic regions from SNP 172332 to 172932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:58,656 DEBUG Processing 288/556 atomic regions from SNP 86251 to 86851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:58,674 DEBUG Processing 576/593 atomic regions from SNP 172632 to 173232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:58,879 DEBUG Processing 289/556 atomic regions from SNP 86551 to 87151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:58,892 DEBUG Processing 577/593 atomic regions from SNP 172932 to 173532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:59,158 DEBUG Processing 290/556 atomic regions from SNP 86851 to 87451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:59,189 DEBUG Processing 578/593 atomic regions from SNP 173232 to 173832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:59,414 DEBUG Processing 291/556 atomic regions from SNP 87151 to 87751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:59,496 DEBUG Processing 579/593 atomic regions from SNP 173532 to 174132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:59,651 DEBUG Processing 292/556 atomic regions from SNP 87451 to 88051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:00:59,755 DEBUG Processing 580/593 atomic regions from SNP 173832 to 174432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:00:59,899 DEBUG Processing 293/556 atomic regions from SNP 87751 to 88351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:00,013 DEBUG Processing 581/593 atomic regions from SNP 174132 to 174732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:00,144 DEBUG Processing 294/556 atomic regions from SNP 88051 to 88651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:00,267 DEBUG Processing 582/593 atomic regions from SNP 174432 to 175032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:00,358 DEBUG Processing 295/556 atomic regions from SNP 88351 to 88951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:00,525 DEBUG Processing 583/593 atomic regions from SNP 174732 to 175332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:00,596 DEBUG Processing 296/556 atomic regions from SNP 88651 to 89251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:00,803 DEBUG Processing 584/593 atomic regions from SNP 175032 to 175632 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:00,815 DEBUG Processing 297/556 atomic regions from SNP 88951 to 89551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:01,044 DEBUG Processing 298/556 atomic regions from SNP 89251 to 89851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:01,060 DEBUG Processing 585/593 atomic regions from SNP 175332 to 175932 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:01,278 DEBUG Processing 299/556 atomic regions from SNP 89551 to 90151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:01,327 DEBUG Processing 586/593 atomic regions from SNP 175632 to 176232 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:01,482 DEBUG Processing 300/556 atomic regions from SNP 89851 to 90451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:01,582 DEBUG Processing 587/593 atomic regions from SNP 175932 to 176532 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:01,731 DEBUG Processing 301/556 atomic regions from SNP 90151 to 90751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:01,864 DEBUG Processing 588/593 atomic regions from SNP 176232 to 176832 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:01,973 DEBUG Processing 302/556 atomic regions from SNP 90451 to 91051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:02,101 DEBUG Processing 589/593 atomic regions from SNP 176532 to 177132 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:02,219 DEBUG Processing 303/556 atomic regions from SNP 90751 to 91351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:02,348 DEBUG Processing 590/593 atomic regions from SNP 176832 to 177432 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:02,462 DEBUG Processing 304/556 atomic regions from SNP 91051 to 91651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:02,621 DEBUG Processing 591/593 atomic regions from SNP 177132 to 177732 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:02,665 DEBUG Processing 305/556 atomic regions from SNP 91351 to 91951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:02,869 DEBUG Processing 592/593 atomic regions from SNP 177432 to 178032 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:02,897 DEBUG Processing 306/556 atomic regions from SNP 91651 to 92251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:03,101 DEBUG Processing 593/593 atomic regions from SNP 177732 to 178332 for chr15 (subchromosome 1 of 1). 2025-01-31 10:01:03,129 DEBUG Processing 307/556 atomic regions from SNP 91951 to 92551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:03,252 DEBUG Unique SNPs positions in subchromosome 1: 178333 2025-01-31 10:01:03,349 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 10:01:03,358 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 10:01:03,362 DEBUG Processing 308/556 atomic regions from SNP 92251 to 92851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:03,559 DEBUG Processing 309/556 atomic regions from SNP 92551 to 93151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:03,808 DEBUG Processing 310/556 atomic regions from SNP 92851 to 93451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:04,015 DEBUG Processing 311/556 atomic regions from SNP 93151 to 93751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:04,273 DEBUG Processing 312/556 atomic regions from SNP 93451 to 94051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:04,574 DEBUG Processing 313/556 atomic regions from SNP 93751 to 94351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:04,768 DEBUG Processing 314/556 atomic regions from SNP 94051 to 94651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:04,943 DEBUG Processing 315/556 atomic regions from SNP 94351 to 94951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:05,190 DEBUG Processing 316/556 atomic regions from SNP 94651 to 95251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:05,365 DEBUG Processing 317/556 atomic regions from SNP 94951 to 95551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:05,437 DEBUG chrY total SNP count: 151 2025-01-31 10:01:05,437 DEBUG chrY length: 91744698 2025-01-31 10:01:05,437 DEBUG ----------------------------------------- 2025-01-31 10:01:05,437 INFO Processing SNPs in chrY 2025-01-31 10:01:05,439 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 5), (5, 15), (15, 28), (28, 47), (47, 58), (58, 69), (69, 80), (80, 83), (83, 92), (92, 99), (99, 100), (100, 101), (101, 102), (102, 104), (104, 106), (106, 107), (107, 109), (109, 151)] 2025-01-31 10:01:05,439 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [5, 10, 13, 19, 11, 11, 11, 3, 9, 7, 1, 1, 1, 2, 2, 1, 2, 42] SNP IDs counts: [5, 10, 13, 19, 11, 11, 11, 3, 9, 7, 1, 1, 1, 2, 2, 1, 2, 42] Critical gap: 15549bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.99Mbp], 0.99Mbp[0.28Mbp], 1.28Mbp[0.44Mbp], 1.72Mbp[0.17Mbp], 1.90Mbp[0.06Mbp], 1.96Mbp[0.17Mbp], 2.14Mbp[2.15Mbp], 4.30Mbp[1.24Mbp], 5.55Mbp[4.12Mbp], 9.67Mbp[1.04Mbp], 10.71Mbp[9.95Mbp], 20.66Mbp[2.06Mbp], 22.72Mbp[13.26Mbp], 35.98Mbp[4.02Mbp], 40.00Mbp[3.04Mbp], 43.04Mbp[0.88Mbp], 43.92Mbp[0.73Mbp], 44.65Mbp[46.06Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 10:01:05,439 DEBUG chrY time: 0.0019900575280189514 s 2025-01-31 10:01:05,540 DEBUG Processing 318/556 atomic regions from SNP 95251 to 95851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:05,734 DEBUG Processing 319/556 atomic regions from SNP 95551 to 96151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:05,924 DEBUG Processing 320/556 atomic regions from SNP 95851 to 96451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:06,101 DEBUG Processing 321/556 atomic regions from SNP 96151 to 96751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:06,276 DEBUG Processing 322/556 atomic regions from SNP 96451 to 97051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:06,457 DEBUG Processing 323/556 atomic regions from SNP 96751 to 97351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:06,636 DEBUG Processing 324/556 atomic regions from SNP 97051 to 97651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:06,813 DEBUG Processing 325/556 atomic regions from SNP 97351 to 97951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:06,991 DEBUG Processing 326/556 atomic regions from SNP 97651 to 98251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:07,189 DEBUG Processing 327/556 atomic regions from SNP 97951 to 98551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:07,399 DEBUG Processing 328/556 atomic regions from SNP 98251 to 98851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:07,589 DEBUG Processing 329/556 atomic regions from SNP 98551 to 99151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:07,766 DEBUG Processing 330/556 atomic regions from SNP 98851 to 99451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:07,941 DEBUG Processing 331/556 atomic regions from SNP 99151 to 99751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:08,118 DEBUG Processing 332/556 atomic regions from SNP 99451 to 100051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:08,143 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 10:01:08,293 DEBUG Processing 333/556 atomic regions from SNP 99751 to 100351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:08,472 DEBUG Processing 334/556 atomic regions from SNP 100051 to 100651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:08,646 DEBUG Processing 335/556 atomic regions from SNP 100351 to 100951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:08,825 DEBUG Processing 336/556 atomic regions from SNP 100651 to 101251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:09,002 DEBUG Processing 337/556 atomic regions from SNP 100951 to 101551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:09,180 DEBUG Processing 338/556 atomic regions from SNP 101251 to 101851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:09,358 DEBUG Processing 339/556 atomic regions from SNP 101551 to 102151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:09,539 DEBUG Processing 340/556 atomic regions from SNP 101851 to 102451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:09,720 DEBUG Processing 341/556 atomic regions from SNP 102151 to 102751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:09,900 DEBUG Processing 342/556 atomic regions from SNP 102451 to 103051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:10,076 DEBUG Processing 343/556 atomic regions from SNP 102751 to 103351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:10,252 DEBUG Processing 344/556 atomic regions from SNP 103051 to 103651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:10,427 DEBUG Processing 345/556 atomic regions from SNP 103351 to 103951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:10,603 DEBUG Processing 346/556 atomic regions from SNP 103651 to 104251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:10,780 DEBUG Processing 347/556 atomic regions from SNP 103951 to 104551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:10,958 DEBUG Processing 348/556 atomic regions from SNP 104251 to 104851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:11,136 DEBUG Processing 349/556 atomic regions from SNP 104551 to 105151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:11,311 DEBUG Processing 350/556 atomic regions from SNP 104851 to 105451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:11,504 DEBUG Processing 351/556 atomic regions from SNP 105151 to 105751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:11,702 DEBUG Processing 352/556 atomic regions from SNP 105451 to 106051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:11,884 DEBUG Processing 353/556 atomic regions from SNP 105751 to 106351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:12,059 DEBUG Processing 354/556 atomic regions from SNP 106051 to 106651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:12,236 DEBUG Processing 355/556 atomic regions from SNP 106351 to 106951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:12,419 DEBUG Processing 356/556 atomic regions from SNP 106651 to 107251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:12,650 DEBUG Processing 357/556 atomic regions from SNP 106951 to 107551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:12,837 DEBUG Processing 358/556 atomic regions from SNP 107251 to 107851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:13,017 DEBUG Processing 359/556 atomic regions from SNP 107551 to 108151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:13,198 DEBUG Processing 360/556 atomic regions from SNP 107851 to 108451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:13,379 DEBUG Processing 361/556 atomic regions from SNP 108151 to 108751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:13,557 DEBUG Processing 362/556 atomic regions from SNP 108451 to 109051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:13,731 DEBUG Processing 363/556 atomic regions from SNP 108751 to 109351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:13,907 DEBUG Processing 364/556 atomic regions from SNP 109051 to 109651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:14,088 DEBUG Processing 365/556 atomic regions from SNP 109351 to 109951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:14,267 DEBUG Processing 366/556 atomic regions from SNP 109651 to 110251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:14,441 DEBUG Processing 367/556 atomic regions from SNP 109951 to 110551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:14,617 DEBUG Processing 368/556 atomic regions from SNP 110251 to 110851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:14,791 DEBUG Processing 369/556 atomic regions from SNP 110551 to 111151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:14,969 DEBUG Processing 370/556 atomic regions from SNP 110851 to 111451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:15,148 DEBUG Processing 371/556 atomic regions from SNP 111151 to 111751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:15,326 DEBUG Processing 372/556 atomic regions from SNP 111451 to 112051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:15,506 DEBUG Processing 373/556 atomic regions from SNP 111751 to 112351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:15,685 DEBUG Processing 374/556 atomic regions from SNP 112051 to 112651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:15,861 DEBUG Processing 375/556 atomic regions from SNP 112351 to 112951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:16,040 DEBUG Processing 376/556 atomic regions from SNP 112651 to 113251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:16,215 DEBUG Processing 377/556 atomic regions from SNP 112951 to 113551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:16,394 DEBUG Processing 378/556 atomic regions from SNP 113251 to 113851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:16,582 DEBUG Processing 379/556 atomic regions from SNP 113551 to 114151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:16,757 DEBUG Processing 380/556 atomic regions from SNP 113851 to 114451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:16,938 DEBUG Processing 381/556 atomic regions from SNP 114151 to 114751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:17,119 DEBUG Processing 382/556 atomic regions from SNP 114451 to 115051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:17,297 DEBUG Processing 383/556 atomic regions from SNP 114751 to 115351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:17,475 DEBUG Processing 384/556 atomic regions from SNP 115051 to 115651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:17,654 DEBUG Processing 385/556 atomic regions from SNP 115351 to 115951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:17,838 DEBUG Processing 386/556 atomic regions from SNP 115651 to 116251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:18,021 DEBUG Processing 387/556 atomic regions from SNP 115951 to 116551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:18,206 DEBUG Processing 388/556 atomic regions from SNP 116251 to 116851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:18,382 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 10:01:18,384 DEBUG chr18: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.010 2025-01-31 10:01:18,479 DEBUG Processing 389/556 atomic regions from SNP 116551 to 117151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:18,665 DEBUG Processing 390/556 atomic regions from SNP 116851 to 117451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:18,889 DEBUG Processing 391/556 atomic regions from SNP 117151 to 117751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:19,103 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 10:01:19,104 DEBUG chr17: Signal quantile: 0.986. signal threshold: 17. Best RMSEA: 0.008 2025-01-31 10:01:19,153 DEBUG Processing 392/556 atomic regions from SNP 117451 to 118051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:19,353 DEBUG Processing 393/556 atomic regions from SNP 117751 to 118351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:19,533 DEBUG Processing 394/556 atomic regions from SNP 118051 to 118651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:19,709 DEBUG Processing 395/556 atomic regions from SNP 118351 to 118951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:19,883 DEBUG Processing 396/556 atomic regions from SNP 118651 to 119251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,012 DEBUG chr18 total SNP count: 155066 2025-01-31 10:01:20,012 DEBUG chr18 length: 90702639 2025-01-31 10:01:20,012 DEBUG ----------------------------------------- 2025-01-31 10:01:20,012 INFO Processing SNPs in chr18 2025-01-31 10:01:20,061 DEBUG Processing 397/556 atomic regions from SNP 118951 to 119551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,164 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155066)] 2025-01-31 10:01:20,238 DEBUG Processing 398/556 atomic regions from SNP 119251 to 119851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,267 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:01:20,412 DEBUG Processing 399/556 atomic regions from SNP 119551 to 120151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,592 DEBUG Processing 400/556 atomic regions from SNP 119851 to 120451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,767 DEBUG Processing 401/556 atomic regions from SNP 120151 to 120751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,806 DEBUG chr17 total SNP count: 158478 2025-01-31 10:01:20,806 DEBUG chr17 length: 94987271 2025-01-31 10:01:20,806 DEBUG ----------------------------------------- 2025-01-31 10:01:20,806 INFO Processing SNPs in chr17 2025-01-31 10:01:20,942 DEBUG Processing 402/556 atomic regions from SNP 120451 to 121051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:20,967 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 158478)] 2025-01-31 10:01:21,078 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:01:21,116 DEBUG Processing 403/556 atomic regions from SNP 120751 to 121351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:21,289 DEBUG Processing 404/556 atomic regions from SNP 121051 to 121651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:21,462 DEBUG Processing 405/556 atomic regions from SNP 121351 to 121951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:21,638 DEBUG Processing 406/556 atomic regions from SNP 121651 to 122251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:21,812 DEBUG Processing 407/556 atomic regions from SNP 121951 to 122551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:21,986 DEBUG Processing 408/556 atomic regions from SNP 122251 to 122851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:22,159 DEBUG Processing 409/556 atomic regions from SNP 122551 to 123151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:22,334 DEBUG Processing 410/556 atomic regions from SNP 122851 to 123451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:22,506 DEBUG Processing 411/556 atomic regions from SNP 123151 to 123751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:22,678 DEBUG Processing 412/556 atomic regions from SNP 123451 to 124051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:22,690 DEBUG Subchromosome time: 179.7019614353776, subchromosome SNPs: 178333 2025-01-31 10:01:22,690 DEBUG Estimated BADs: [2.92, 8.75, 20.41, 8.75, 17.50, 1.46, 0.36, 2.92, 0.58, 2.92, 0.58, 2.92, 0.73, 2.92, 5.83, 1.46, 0.29, 1.46, 0.97, 5.83, 1.46, 17.50, 0.97, 0.32, 1.46, 17.50, 2.92, 11.66, 5.83, 2.92, 8.75, 0.97, 2.92, 8.75, 1.46] SNP counts: [3375, 5341, 1861, 5219, 2663, 16778, 3691, 1087, 1902, 1813, 5089, 1203, 3304, 8207, 1290, 10033, 8669, 3635, 9416, 4047, 12398, 135, 3380, 4163, 2624, 255, 4776, 12261, 5914, 5961, 1829, 4814, 11196, 9187, 817] SNP IDs counts: [3375, 5341, 1861, 5219, 2663, 16778, 3691, 1087, 1902, 1813, 5089, 1203, 3304, 8207, 1290, 10033, 8669, 3635, 9416, 4047, 12398, 135, 3380, 4163, 2624, 255, 4776, 12261, 5914, 5961, 1829, 4814, 11196, 9187, 817] Critical gap: 548627bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.09Mbp, 9.14Mbp, 12.08Mbp, 13.49Mbp, 23.16Mbp, 25.43Mbp, 26.00Mbp, 27.09Mbp, 28.06Mbp, 31.06Mbp, 31.72Mbp, 33.68Mbp, 38.28Mbp, 39.11Mbp, 44.83Mbp, 50.28Mbp, 52.35Mbp, 57.80Mbp, 59.95Mbp, 67.11Mbp, 67.19Mbp, 69.12Mbp, 71.63Mbp, 73.05Mbp, 73.19Mbp, 75.83Mbp, 82.39Mbp, 85.58Mbp, 88.73Mbp, 89.72Mbp, 92.42Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 10:01:22,690 DEBUG chr15 time: 179.70260811969638 s 2025-01-31 10:01:22,790 DEBUG chr15: Fitting background model for 35 segments 2025-01-31 10:01:22,853 DEBUG Processing 413/556 atomic regions from SNP 123751 to 124351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:23,029 DEBUG Processing 414/556 atomic regions from SNP 124051 to 124651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:23,204 DEBUG Processing 415/556 atomic regions from SNP 124351 to 124951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:23,379 DEBUG Processing 416/556 atomic regions from SNP 124651 to 125251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:23,554 DEBUG Processing 417/556 atomic regions from SNP 124951 to 125551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:23,728 DEBUG Processing 418/556 atomic regions from SNP 125251 to 125851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:23,904 DEBUG Processing 419/556 atomic regions from SNP 125551 to 126151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:24,082 DEBUG Processing 420/556 atomic regions from SNP 125851 to 126451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:24,255 DEBUG Processing 421/556 atomic regions from SNP 126151 to 126751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:24,430 DEBUG Processing 422/556 atomic regions from SNP 126451 to 127051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:24,609 DEBUG Processing 423/556 atomic regions from SNP 126751 to 127351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:24,782 DEBUG Processing 424/556 atomic regions from SNP 127051 to 127651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:24,957 DEBUG Processing 425/556 atomic regions from SNP 127351 to 127951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:25,135 DEBUG Processing 426/556 atomic regions from SNP 127651 to 128251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:25,316 DEBUG Processing 427/556 atomic regions from SNP 127951 to 128551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:25,502 DEBUG Processing 428/556 atomic regions from SNP 128251 to 128851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:25,677 DEBUG Processing 429/556 atomic regions from SNP 128551 to 129151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:25,851 DEBUG Processing 430/556 atomic regions from SNP 128851 to 129451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:26,024 DEBUG Processing 431/556 atomic regions from SNP 129151 to 129751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:26,222 DEBUG Processing 432/556 atomic regions from SNP 129451 to 130051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:26,406 DEBUG Processing 433/556 atomic regions from SNP 129751 to 130351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:26,580 DEBUG Processing 434/556 atomic regions from SNP 130051 to 130651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:26,753 DEBUG Processing 435/556 atomic regions from SNP 130351 to 130951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:26,930 DEBUG Processing 436/556 atomic regions from SNP 130651 to 131251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:27,142 DEBUG Processing 437/556 atomic regions from SNP 130951 to 131551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:27,380 DEBUG Processing 438/556 atomic regions from SNP 131251 to 131851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:27,616 DEBUG Processing 439/556 atomic regions from SNP 131551 to 132151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:27,855 DEBUG Processing 440/556 atomic regions from SNP 131851 to 132451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:28,092 DEBUG Processing 441/556 atomic regions from SNP 132151 to 132751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:28,325 DEBUG Processing 442/556 atomic regions from SNP 132451 to 133051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:28,563 DEBUG Processing 443/556 atomic regions from SNP 132751 to 133351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:28,794 DEBUG Processing 444/556 atomic regions from SNP 133051 to 133651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:29,028 DEBUG Processing 445/556 atomic regions from SNP 133351 to 133951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:29,265 DEBUG Processing 446/556 atomic regions from SNP 133651 to 134251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:29,498 DEBUG Processing 447/556 atomic regions from SNP 133951 to 134551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:29,729 DEBUG Processing 448/556 atomic regions from SNP 134251 to 134851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:29,959 DEBUG Processing 449/556 atomic regions from SNP 134551 to 135151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:30,193 DEBUG Processing 450/556 atomic regions from SNP 134851 to 135451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:30,433 DEBUG Processing 451/556 atomic regions from SNP 135151 to 135751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:30,669 DEBUG Processing 452/556 atomic regions from SNP 135451 to 136051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:30,899 DEBUG Processing 453/556 atomic regions from SNP 135751 to 136351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:31,132 DEBUG Processing 454/556 atomic regions from SNP 136051 to 136651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:31,364 DEBUG Processing 455/556 atomic regions from SNP 136351 to 136951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:31,597 DEBUG Processing 456/556 atomic regions from SNP 136651 to 137251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:31,830 DEBUG Processing 457/556 atomic regions from SNP 136951 to 137551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:32,064 DEBUG Processing 458/556 atomic regions from SNP 137251 to 137851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:32,435 DEBUG Processing 459/556 atomic regions from SNP 137551 to 138151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:32,731 DEBUG Processing 460/556 atomic regions from SNP 137851 to 138451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:33,064 DEBUG Processing 461/556 atomic regions from SNP 138151 to 138751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:33,449 DEBUG Processing 462/556 atomic regions from SNP 138451 to 139051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:33,837 DEBUG Processing 463/556 atomic regions from SNP 138751 to 139351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:34,222 DEBUG Processing 464/556 atomic regions from SNP 139051 to 139651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:34,582 DEBUG Processing 465/556 atomic regions from SNP 139351 to 139951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:34,950 DEBUG Processing 466/556 atomic regions from SNP 139651 to 140251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:35,271 DEBUG Processing 467/556 atomic regions from SNP 139951 to 140551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:35,615 DEBUG Processing 468/556 atomic regions from SNP 140251 to 140851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:35,893 DEBUG Processing 469/556 atomic regions from SNP 140551 to 141151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:36,254 DEBUG Processing 470/556 atomic regions from SNP 140851 to 141451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:36,598 DEBUG Processing 471/556 atomic regions from SNP 141151 to 141751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:36,805 DEBUG Processing 472/556 atomic regions from SNP 141451 to 142051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:37,075 DEBUG Processing 473/556 atomic regions from SNP 141751 to 142351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:37,355 DEBUG Processing 474/556 atomic regions from SNP 142051 to 142651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:37,624 DEBUG Processing 475/556 atomic regions from SNP 142351 to 142951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:37,900 DEBUG Processing 476/556 atomic regions from SNP 142651 to 143251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:38,163 DEBUG Processing 477/556 atomic regions from SNP 142951 to 143551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:38,429 DEBUG Processing 478/556 atomic regions from SNP 143251 to 143851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:38,694 DEBUG Processing 479/556 atomic regions from SNP 143551 to 144151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:38,954 DEBUG Processing 480/556 atomic regions from SNP 143851 to 144451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:39,212 DEBUG Processing 481/556 atomic regions from SNP 144151 to 144751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:39,471 DEBUG Processing 482/556 atomic regions from SNP 144451 to 145051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:39,679 DEBUG Processing 483/556 atomic regions from SNP 144751 to 145351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:39,959 DEBUG Processing 484/556 atomic regions from SNP 145051 to 145651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:40,220 DEBUG Processing 485/556 atomic regions from SNP 145351 to 145951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:40,486 DEBUG Processing 486/556 atomic regions from SNP 145651 to 146251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:40,681 DEBUG Processing 487/556 atomic regions from SNP 145951 to 146551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:40,947 DEBUG Processing 488/556 atomic regions from SNP 146251 to 146851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:41,214 DEBUG Processing 489/556 atomic regions from SNP 146551 to 147151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:41,464 DEBUG Processing 490/556 atomic regions from SNP 146851 to 147451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:41,659 DEBUG Processing 491/556 atomic regions from SNP 147151 to 147751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:41,877 DEBUG Processing 492/556 atomic regions from SNP 147451 to 148051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:41,938 DEBUG Segmenting atomic regions: 2025-01-31 10:01:42,002 DEBUG Processing 1/515 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,125 DEBUG Processing 493/556 atomic regions from SNP 147751 to 148351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:42,203 DEBUG Processing 2/515 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,328 DEBUG Processing 494/556 atomic regions from SNP 148051 to 148651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:42,384 DEBUG Processing 3/515 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,508 DEBUG Processing 495/556 atomic regions from SNP 148351 to 148951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:42,557 DEBUG Processing 4/515 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,691 DEBUG Processing 496/556 atomic regions from SNP 148651 to 149251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:42,730 DEBUG Processing 5/515 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,873 DEBUG Processing 497/556 atomic regions from SNP 148951 to 149551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:42,905 DEBUG Processing 6/515 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,056 DEBUG Processing 498/556 atomic regions from SNP 149251 to 149851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:43,078 DEBUG Processing 7/515 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,236 DEBUG Processing 499/556 atomic regions from SNP 149551 to 150151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:43,247 DEBUG Processing 8/515 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,309 DEBUG Segmenting atomic regions: 2025-01-31 10:01:43,379 DEBUG Processing 1/527 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:43,418 DEBUG Processing 500/556 atomic regions from SNP 149851 to 150451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:43,422 DEBUG Processing 9/515 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,581 DEBUG Processing 2/527 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:43,605 DEBUG Processing 501/556 atomic regions from SNP 150151 to 150751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:43,607 DEBUG Processing 10/515 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,798 DEBUG Processing 3/527 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:43,810 DEBUG Processing 502/556 atomic regions from SNP 150451 to 151051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:43,814 DEBUG Processing 11/515 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,984 DEBUG Processing 4/527 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:43,997 DEBUG Processing 503/556 atomic regions from SNP 150751 to 151351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:44,012 DEBUG Processing 12/515 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,168 DEBUG Processing 5/527 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:44,181 DEBUG Processing 504/556 atomic regions from SNP 151051 to 151651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:44,205 DEBUG Processing 13/515 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,350 DEBUG Processing 6/527 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:44,366 DEBUG Processing 505/556 atomic regions from SNP 151351 to 151951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:44,400 DEBUG Processing 14/515 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,533 DEBUG Processing 7/527 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:44,570 DEBUG Processing 506/556 atomic regions from SNP 151651 to 152251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:44,588 DEBUG Processing 15/515 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,712 DEBUG Processing 8/527 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:44,784 DEBUG Processing 507/556 atomic regions from SNP 151951 to 152551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:44,785 DEBUG Processing 16/515 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,896 DEBUG Processing 9/527 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:44,975 DEBUG Processing 17/515 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,999 DEBUG Processing 508/556 atomic regions from SNP 152251 to 152851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:45,075 DEBUG Processing 10/527 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:45,154 DEBUG Processing 18/515 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,212 DEBUG Processing 509/556 atomic regions from SNP 152551 to 153151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:45,255 DEBUG Processing 11/527 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:45,348 DEBUG Processing 19/515 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,406 DEBUG Processing 510/556 atomic regions from SNP 152851 to 153451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:45,437 DEBUG Processing 12/527 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:45,530 DEBUG Processing 20/515 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,617 DEBUG Processing 511/556 atomic regions from SNP 153151 to 153751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:45,648 DEBUG Processing 13/527 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:45,732 DEBUG Processing 21/515 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,842 DEBUG Processing 512/556 atomic regions from SNP 153451 to 154051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:45,847 DEBUG Processing 14/527 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:45,909 DEBUG Processing 22/515 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,041 DEBUG Processing 15/527 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:46,063 DEBUG Processing 513/556 atomic regions from SNP 153751 to 154351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:46,085 DEBUG Processing 23/515 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,249 DEBUG Processing 16/527 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:46,261 DEBUG Processing 24/515 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,279 DEBUG Processing 514/556 atomic regions from SNP 154051 to 154651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:46,437 DEBUG Processing 25/515 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,440 DEBUG Processing 17/527 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:46,490 DEBUG Processing 515/556 atomic regions from SNP 154351 to 154951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:46,611 DEBUG Processing 26/515 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,644 DEBUG Processing 18/527 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:46,709 DEBUG Processing 516/556 atomic regions from SNP 154651 to 155251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:46,780 DEBUG Processing 27/515 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,846 DEBUG Processing 19/527 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:46,928 DEBUG Processing 517/556 atomic regions from SNP 154951 to 155551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:46,950 DEBUG Processing 28/515 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,044 DEBUG Processing 20/527 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:47,123 DEBUG Processing 29/515 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,146 DEBUG Processing 518/556 atomic regions from SNP 155251 to 155851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:47,241 DEBUG Processing 21/527 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:47,294 DEBUG Processing 30/515 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,365 DEBUG Processing 519/556 atomic regions from SNP 155551 to 156151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:47,444 DEBUG Processing 22/527 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:47,460 DEBUG Processing 31/515 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,577 DEBUG Processing 520/556 atomic regions from SNP 155851 to 156451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:47,621 DEBUG Processing 23/527 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:47,630 DEBUG Processing 32/515 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,784 DEBUG Processing 521/556 atomic regions from SNP 156151 to 156751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:47,801 DEBUG Processing 24/527 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:47,802 DEBUG Processing 33/515 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,980 DEBUG Processing 34/515 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,983 DEBUG Processing 25/527 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:48,002 DEBUG Processing 522/556 atomic regions from SNP 156451 to 157051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:48,155 DEBUG Processing 35/515 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,167 DEBUG Processing 26/527 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:48,220 DEBUG Processing 523/556 atomic regions from SNP 156751 to 157351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:48,326 DEBUG Processing 36/515 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,355 DEBUG Processing 27/527 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:48,430 DEBUG Processing 524/556 atomic regions from SNP 157051 to 157651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:48,498 DEBUG Processing 37/515 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,554 DEBUG Processing 28/527 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:48,645 DEBUG Processing 525/556 atomic regions from SNP 157351 to 157951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:48,666 DEBUG Processing 38/515 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,733 DEBUG Processing 29/527 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:48,842 DEBUG Processing 39/515 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,848 DEBUG Processing 526/556 atomic regions from SNP 157651 to 158251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:48,915 DEBUG Processing 30/527 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:49,013 DEBUG Processing 40/515 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,051 DEBUG Processing 527/556 atomic regions from SNP 157951 to 158551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:49,094 DEBUG Processing 31/527 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:49,188 DEBUG Processing 41/515 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,243 DEBUG Processing 528/556 atomic regions from SNP 158251 to 158851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:49,273 DEBUG Processing 32/527 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:49,354 DEBUG Processing 42/515 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,439 DEBUG Processing 529/556 atomic regions from SNP 158551 to 159151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:49,449 DEBUG Processing 33/527 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:49,521 DEBUG Processing 43/515 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,628 DEBUG Processing 34/527 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:49,647 DEBUG Processing 530/556 atomic regions from SNP 158851 to 159451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:49,713 DEBUG Processing 44/515 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,810 DEBUG Processing 35/527 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:49,864 DEBUG Processing 531/556 atomic regions from SNP 159151 to 159751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:49,897 DEBUG Processing 45/515 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,991 DEBUG Processing 36/527 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:50,068 DEBUG Processing 46/515 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,081 DEBUG Processing 532/556 atomic regions from SNP 159451 to 160051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:50,170 DEBUG Processing 37/527 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:50,247 DEBUG Processing 47/515 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,293 DEBUG Processing 533/556 atomic regions from SNP 159751 to 160351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:50,352 DEBUG Processing 38/527 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:50,418 DEBUG Processing 48/515 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,506 DEBUG Processing 534/556 atomic regions from SNP 160051 to 160651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:50,534 DEBUG Processing 39/527 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:50,591 DEBUG Processing 49/515 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,719 DEBUG Processing 40/527 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:50,720 DEBUG Processing 535/556 atomic regions from SNP 160351 to 160951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:50,762 DEBUG Processing 50/515 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,899 DEBUG Processing 41/527 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:50,932 DEBUG Processing 536/556 atomic regions from SNP 160651 to 161251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:50,939 DEBUG Processing 51/515 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,078 DEBUG Processing 42/527 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:51,111 DEBUG Processing 52/515 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,134 DEBUG Processing 537/556 atomic regions from SNP 160951 to 161551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:51,265 DEBUG Processing 43/527 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:51,306 DEBUG Processing 53/515 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,327 DEBUG Processing 538/556 atomic regions from SNP 161251 to 161851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:51,445 DEBUG Processing 44/527 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:51,499 DEBUG Processing 54/515 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,509 DEBUG Processing 539/556 atomic regions from SNP 161551 to 162151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:51,625 DEBUG Processing 45/527 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:51,669 DEBUG Processing 55/515 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,689 DEBUG Processing 540/556 atomic regions from SNP 161851 to 162451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:51,809 DEBUG Processing 46/527 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:51,845 DEBUG Processing 56/515 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,876 DEBUG Processing 541/556 atomic regions from SNP 162151 to 162751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:51,990 DEBUG Processing 47/527 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:52,021 DEBUG Processing 57/515 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,064 DEBUG Processing 542/556 atomic regions from SNP 162451 to 163051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:52,169 DEBUG Processing 48/527 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:52,196 DEBUG Processing 58/515 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,246 DEBUG Processing 543/556 atomic regions from SNP 162751 to 163351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:52,347 DEBUG Processing 49/527 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:52,367 DEBUG Processing 59/515 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,427 DEBUG Processing 544/556 atomic regions from SNP 163051 to 163651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:52,525 DEBUG Processing 50/527 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:52,543 DEBUG Processing 60/515 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,637 DEBUG Processing 545/556 atomic regions from SNP 163351 to 163951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:52,706 DEBUG Processing 51/527 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:52,717 DEBUG Processing 61/515 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,850 DEBUG Processing 546/556 atomic regions from SNP 163651 to 164251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:52,892 DEBUG Processing 52/527 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:52,894 DEBUG Processing 62/515 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,043 DEBUG Processing 547/556 atomic regions from SNP 163951 to 164551 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:53,074 DEBUG Processing 63/515 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,084 DEBUG Processing 53/527 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:53,232 DEBUG Processing 548/556 atomic regions from SNP 164251 to 164851 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:53,250 DEBUG Processing 64/515 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,270 DEBUG Processing 54/527 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:53,424 DEBUG Processing 65/515 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,431 DEBUG Processing 549/556 atomic regions from SNP 164551 to 165151 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:53,454 DEBUG Processing 55/527 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:53,600 DEBUG Processing 66/515 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,643 DEBUG Processing 550/556 atomic regions from SNP 164851 to 165451 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:53,662 DEBUG Processing 56/527 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:53,774 DEBUG Processing 67/515 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,855 DEBUG Processing 551/556 atomic regions from SNP 165151 to 165751 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:53,856 DEBUG Processing 57/527 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:53,949 DEBUG Processing 68/515 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,042 DEBUG Processing 58/527 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:54,049 DEBUG Processing 552/556 atomic regions from SNP 165451 to 166051 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:54,119 DEBUG Processing 69/515 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,226 DEBUG Processing 59/527 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:54,256 DEBUG Processing 553/556 atomic regions from SNP 165751 to 166351 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:54,292 DEBUG Processing 70/515 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,410 DEBUG Processing 60/527 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:54,465 DEBUG Processing 71/515 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,468 DEBUG Processing 554/556 atomic regions from SNP 166051 to 166651 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:54,592 DEBUG Processing 61/527 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:54,641 DEBUG Processing 72/515 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,672 DEBUG Processing 555/556 atomic regions from SNP 166351 to 166951 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:54,773 DEBUG Processing 62/527 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:54,816 DEBUG Processing 73/515 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,881 DEBUG Processing 556/556 atomic regions from SNP 166651 to 167251 for chr16 (subchromosome 1 of 1). 2025-01-31 10:01:54,954 DEBUG Processing 63/527 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:54,990 DEBUG Processing 74/515 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,037 DEBUG Unique SNPs positions in subchromosome 1: 167252 2025-01-31 10:01:55,138 DEBUG Processing 64/527 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:55,165 DEBUG Processing 75/515 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,338 DEBUG Processing 76/515 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,341 DEBUG Processing 65/527 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:55,515 DEBUG Processing 77/515 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,543 DEBUG Processing 66/527 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:55,696 DEBUG Processing 78/515 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,731 DEBUG Processing 67/527 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:55,868 DEBUG Processing 79/515 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,918 DEBUG Processing 68/527 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:56,044 DEBUG Processing 80/515 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,108 DEBUG Processing 69/527 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:56,222 DEBUG Processing 81/515 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,310 DEBUG Processing 70/527 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:56,397 DEBUG Processing 82/515 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,553 DEBUG Processing 71/527 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:56,631 DEBUG Processing 83/515 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,796 DEBUG Processing 72/527 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:56,827 DEBUG Processing 84/515 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,989 DEBUG Processing 73/527 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:57,007 DEBUG Processing 85/515 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,264 DEBUG Processing 74/527 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:57,283 DEBUG Processing 86/515 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,557 DEBUG Processing 75/527 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:57,567 DEBUG Processing 87/515 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,862 DEBUG Processing 76/527 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:57,863 DEBUG Processing 88/515 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,165 DEBUG Processing 89/515 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,172 DEBUG Processing 77/527 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:58,444 DEBUG Processing 90/515 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,467 DEBUG Processing 78/527 atomic regions from SNP 23177 to 23777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:58,726 DEBUG Processing 91/515 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,751 DEBUG Processing 79/527 atomic regions from SNP 23477 to 24077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:58,932 DEBUG Processing 92/515 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:58,966 DEBUG Processing 80/527 atomic regions from SNP 23777 to 24377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:59,115 DEBUG Processing 93/515 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,159 DEBUG Processing 81/527 atomic regions from SNP 24077 to 24677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:59,330 DEBUG Processing 94/515 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,399 DEBUG Processing 82/527 atomic regions from SNP 24377 to 24977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:59,586 DEBUG Processing 95/515 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,671 DEBUG Processing 83/527 atomic regions from SNP 24677 to 25277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:01:59,865 DEBUG Processing 96/515 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:59,970 DEBUG Processing 84/527 atomic regions from SNP 24977 to 25577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:00,150 DEBUG Processing 97/515 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,260 DEBUG Processing 85/527 atomic regions from SNP 25277 to 25877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:00,430 DEBUG Processing 98/515 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,544 DEBUG Processing 86/527 atomic regions from SNP 25577 to 26177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:00,702 DEBUG Processing 99/515 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:00,844 DEBUG Processing 87/527 atomic regions from SNP 25877 to 26477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:00,986 DEBUG Processing 100/515 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,105 DEBUG Processing 88/527 atomic regions from SNP 26177 to 26777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:01,252 DEBUG Processing 101/515 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,368 DEBUG Processing 89/527 atomic regions from SNP 26477 to 27077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:01,508 DEBUG Processing 102/515 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,616 DEBUG Processing 90/527 atomic regions from SNP 26777 to 27377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:01,756 DEBUG Processing 103/515 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:01,860 DEBUG Processing 91/527 atomic regions from SNP 27077 to 27677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:01,967 DEBUG Processing 104/515 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,052 DEBUG Processing 92/527 atomic regions from SNP 27377 to 27977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:02,154 DEBUG Processing 105/515 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,259 DEBUG Processing 93/527 atomic regions from SNP 27677 to 28277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:02,364 DEBUG Processing 106/515 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,485 DEBUG Processing 94/527 atomic regions from SNP 27977 to 28577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:02,609 DEBUG Processing 107/515 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:02,742 DEBUG Processing 95/527 atomic regions from SNP 28277 to 28877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:02,878 DEBUG Processing 108/515 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,011 DEBUG Processing 96/527 atomic regions from SNP 28577 to 29177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:03,145 DEBUG Processing 109/515 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,258 DEBUG Processing 97/527 atomic regions from SNP 28877 to 29477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:03,326 DEBUG Processing 110/515 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,450 DEBUG Processing 98/527 atomic regions from SNP 29177 to 29777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:03,508 DEBUG Processing 111/515 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,706 DEBUG Processing 99/527 atomic regions from SNP 29477 to 30077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:03,767 DEBUG Processing 112/515 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:03,983 DEBUG Processing 100/527 atomic regions from SNP 29777 to 30377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:04,061 DEBUG Processing 113/515 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,266 DEBUG Processing 101/527 atomic regions from SNP 30077 to 30677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:04,325 DEBUG Processing 114/515 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,485 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 10:02:04,547 DEBUG Processing 102/527 atomic regions from SNP 30377 to 30977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:04,592 DEBUG Processing 115/515 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:04,805 DEBUG Processing 103/527 atomic regions from SNP 30677 to 31277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:04,862 DEBUG Processing 116/515 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,065 DEBUG Processing 104/527 atomic regions from SNP 30977 to 31577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:05,091 DEBUG Processing 117/515 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,321 DEBUG Processing 105/527 atomic regions from SNP 31277 to 31877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:05,346 DEBUG Processing 118/515 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,517 DEBUG Processing 106/527 atomic regions from SNP 31577 to 32177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:05,522 DEBUG Processing 119/515 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,696 DEBUG Processing 120/515 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,703 DEBUG Processing 107/527 atomic regions from SNP 31877 to 32477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:05,987 DEBUG Processing 121/515 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:05,993 DEBUG Processing 108/527 atomic regions from SNP 32177 to 32777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:06,194 DEBUG Processing 122/515 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,218 DEBUG Processing 109/527 atomic regions from SNP 32477 to 33077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:06,438 DEBUG Processing 123/515 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,462 DEBUG Processing 110/527 atomic regions from SNP 32777 to 33377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:06,678 DEBUG Processing 124/515 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:06,707 DEBUG Processing 111/527 atomic regions from SNP 33077 to 33677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:06,946 DEBUG Processing 125/515 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,001 DEBUG Processing 112/527 atomic regions from SNP 33377 to 33977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:07,215 DEBUG Processing 126/515 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,302 DEBUG Processing 113/527 atomic regions from SNP 33677 to 34277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:07,480 DEBUG Processing 127/515 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,601 DEBUG Processing 114/527 atomic regions from SNP 33977 to 34577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:07,754 DEBUG Processing 128/515 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:07,901 DEBUG Processing 115/527 atomic regions from SNP 34277 to 34877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:08,008 DEBUG Processing 129/515 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,151 DEBUG Processing 116/527 atomic regions from SNP 34577 to 35177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:08,265 DEBUG Processing 130/515 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,470 DEBUG Processing 117/527 atomic regions from SNP 34877 to 35477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:08,484 DEBUG Processing 131/515 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,505 DEBUG Subchromosome time: 160.35179682448506, subchromosome SNPs: 167252 2025-01-31 10:02:08,506 DEBUG Estimated BADs: [6.68, 1.11, 4.45, 1.11, 4.45, 2.23, 8.90, 0.56, 4.45, 0.74, 4.45, 0.74, 2.23, 1.11, 2.23, 0.56, 4.45, 0.56, 6.68, 0.56, 1.11, 0.45, 1.11, 6.68, 1.11, 11.13, 6.68] SNP counts: [3708, 4800, 1837, 1853, 8082, 4437, 3588, 970, 6945, 10216, 18354, 7758, 2297, 7583, 2415, 8539, 5261, 9704, 201, 7792, 16485, 7512, 6921, 721, 3599, 8892, 6782] SNP IDs counts: [3708, 4800, 1837, 1853, 8082, 4437, 3588, 970, 6945, 10216, 18354, 7758, 2297, 7583, 2415, 8539, 5261, 9704, 201, 7792, 16485, 7512, 6921, 721, 3599, 8892, 6782] Critical gap: 533882bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.02Mbp], 5.43Mbp, 8.04Mbp, 9.05Mbp, 10.07Mbp, 14.48Mbp, 17.11Mbp, 19.03Mbp, 19.68Mbp, 23.50Mbp, 29.27Mbp, 39.13Mbp, 43.52Mbp, 44.76Mbp, 49.25Mbp, 50.57Mbp, 55.82Mbp, 58.83Mbp, 64.85Mbp, 64.95Mbp, 69.56Mbp, 78.91Mbp, 83.40Mbp, 87.35Mbp, 87.74Mbp, 89.76Mbp, 94.46Mbp, 98.21Mbp] 2025-01-31 10:02:08,506 DEBUG chr16 time: 160.3523136638105 s 2025-01-31 10:02:08,667 DEBUG chr16: Fitting background model for 27 segments 2025-01-31 10:02:08,751 DEBUG Processing 132/515 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:08,772 DEBUG Processing 118/527 atomic regions from SNP 35177 to 35777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:08,999 DEBUG Processing 133/515 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,054 DEBUG Processing 119/527 atomic regions from SNP 35477 to 36077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:09,272 DEBUG Processing 134/515 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,371 DEBUG Processing 120/527 atomic regions from SNP 35777 to 36377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:09,566 DEBUG Processing 135/515 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:09,690 DEBUG Processing 121/527 atomic regions from SNP 36077 to 36677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:09,879 DEBUG Processing 136/515 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,004 DEBUG Processing 122/527 atomic regions from SNP 36377 to 36977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:10,170 DEBUG Processing 137/515 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,327 DEBUG Processing 123/527 atomic regions from SNP 36677 to 37277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:10,456 DEBUG Processing 138/515 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,635 DEBUG Processing 124/527 atomic regions from SNP 36977 to 37577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:10,739 DEBUG Processing 139/515 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:10,956 DEBUG Processing 125/527 atomic regions from SNP 37277 to 37877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:11,011 DEBUG Processing 140/515 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,246 DEBUG Processing 126/527 atomic regions from SNP 37577 to 38177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:11,272 DEBUG Processing 141/515 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,538 DEBUG Processing 142/515 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,546 DEBUG Processing 127/527 atomic regions from SNP 37877 to 38477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:11,824 DEBUG Processing 143/515 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:11,867 DEBUG Processing 128/527 atomic regions from SNP 38177 to 38777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:12,047 DEBUG Processing 144/515 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,143 DEBUG Processing 129/527 atomic regions from SNP 38477 to 39077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:12,249 DEBUG Processing 145/515 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,427 DEBUG Processing 130/527 atomic regions from SNP 38777 to 39377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:12,525 DEBUG Processing 146/515 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,666 DEBUG Processing 131/527 atomic regions from SNP 39077 to 39677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:12,721 DEBUG Processing 147/515 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:12,904 DEBUG Processing 132/527 atomic regions from SNP 39377 to 39977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:12,965 DEBUG Processing 148/515 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,225 DEBUG Processing 133/527 atomic regions from SNP 39677 to 40277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:13,251 DEBUG Processing 149/515 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,527 DEBUG Processing 150/515 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,534 DEBUG Processing 134/527 atomic regions from SNP 39977 to 40577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:13,810 DEBUG Processing 151/515 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:13,844 DEBUG Processing 135/527 atomic regions from SNP 40277 to 40877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:14,082 DEBUG Processing 152/515 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,151 DEBUG Processing 136/527 atomic regions from SNP 40577 to 41177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:14,343 DEBUG Processing 153/515 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,433 DEBUG Processing 137/527 atomic regions from SNP 40877 to 41477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:14,607 DEBUG Processing 154/515 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:14,739 DEBUG Processing 138/527 atomic regions from SNP 41177 to 41777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:14,878 DEBUG Processing 155/515 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,043 DEBUG Processing 139/527 atomic regions from SNP 41477 to 42077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:15,139 DEBUG Processing 156/515 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,307 DEBUG Processing 140/527 atomic regions from SNP 41777 to 42377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:15,372 DEBUG Processing 157/515 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,637 DEBUG Processing 141/527 atomic regions from SNP 42077 to 42677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:15,657 DEBUG Processing 158/515 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,936 DEBUG Processing 159/515 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:15,955 DEBUG Processing 142/527 atomic regions from SNP 42377 to 42977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:16,200 DEBUG Processing 160/515 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,265 DEBUG Processing 143/527 atomic regions from SNP 42677 to 43277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:16,469 DEBUG Processing 161/515 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,546 DEBUG Processing 144/527 atomic regions from SNP 42977 to 43577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:16,738 DEBUG Processing 162/515 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:16,822 DEBUG Processing 145/527 atomic regions from SNP 43277 to 43877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:16,985 DEBUG Processing 163/515 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,148 DEBUG Processing 146/527 atomic regions from SNP 43577 to 44177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:17,289 DEBUG Processing 164/515 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,452 DEBUG Processing 147/527 atomic regions from SNP 43877 to 44477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:17,566 DEBUG Processing 165/515 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,732 DEBUG Processing 148/527 atomic regions from SNP 44177 to 44777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:17,841 DEBUG Processing 166/515 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:17,977 DEBUG Processing 149/527 atomic regions from SNP 44477 to 45077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:18,055 DEBUG Processing 167/515 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,215 DEBUG Processing 150/527 atomic regions from SNP 44777 to 45377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:18,291 DEBUG Processing 168/515 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,456 DEBUG Processing 151/527 atomic regions from SNP 45077 to 45677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:18,560 DEBUG Processing 169/515 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,711 DEBUG Processing 152/527 atomic regions from SNP 45377 to 45977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:18,864 DEBUG Processing 170/515 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:18,996 DEBUG Processing 153/527 atomic regions from SNP 45677 to 46277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:19,144 DEBUG Processing 171/515 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,275 DEBUG Processing 154/527 atomic regions from SNP 45977 to 46577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:19,420 DEBUG Processing 172/515 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,532 DEBUG Processing 155/527 atomic regions from SNP 46277 to 46877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:19,632 DEBUG Processing 173/515 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,736 DEBUG Processing 156/527 atomic regions from SNP 46577 to 47177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:19,825 DEBUG Processing 174/515 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:19,991 DEBUG Processing 157/527 atomic regions from SNP 46877 to 47477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:20,066 DEBUG Processing 175/515 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,252 DEBUG Processing 158/527 atomic regions from SNP 47177 to 47777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:20,322 DEBUG Processing 176/515 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,470 DEBUG Processing 159/527 atomic regions from SNP 47477 to 48077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:20,542 DEBUG Processing 177/515 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,733 DEBUG Processing 160/527 atomic regions from SNP 47777 to 48377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:20,746 DEBUG Processing 178/515 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,967 DEBUG Processing 179/515 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:20,975 DEBUG Processing 161/527 atomic regions from SNP 48077 to 48677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:21,244 DEBUG Processing 180/515 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,284 DEBUG Processing 162/527 atomic regions from SNP 48377 to 48977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:21,440 DEBUG Processing 181/515 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,511 DEBUG Processing 163/527 atomic regions from SNP 48677 to 49277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:21,645 DEBUG Processing 182/515 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,725 DEBUG Processing 164/527 atomic regions from SNP 48977 to 49577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:21,851 DEBUG Processing 183/515 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:21,908 DEBUG Processing 165/527 atomic regions from SNP 49277 to 49877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:22,064 DEBUG Processing 184/515 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,094 DEBUG Processing 166/527 atomic regions from SNP 49577 to 50177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:22,282 DEBUG Processing 167/527 atomic regions from SNP 49877 to 50477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:22,284 DEBUG Processing 185/515 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,483 DEBUG Processing 168/527 atomic regions from SNP 50177 to 50777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:22,509 DEBUG Processing 186/515 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,713 DEBUG Processing 169/527 atomic regions from SNP 50477 to 51077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:22,769 DEBUG Processing 187/515 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:22,966 DEBUG Processing 170/527 atomic regions from SNP 50777 to 51377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:23,016 DEBUG Processing 188/515 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,276 DEBUG Processing 171/527 atomic regions from SNP 51077 to 51677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:23,328 DEBUG Processing 189/515 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,575 DEBUG Processing 172/527 atomic regions from SNP 51377 to 51977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:23,634 DEBUG Processing 190/515 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:23,886 DEBUG Processing 173/527 atomic regions from SNP 51677 to 52277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:23,940 DEBUG Processing 191/515 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,173 DEBUG Processing 174/527 atomic regions from SNP 51977 to 52577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:24,238 DEBUG Processing 192/515 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,443 DEBUG Processing 175/527 atomic regions from SNP 52277 to 52877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:24,533 DEBUG Processing 193/515 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:24,730 DEBUG Processing 176/527 atomic regions from SNP 52577 to 53177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:24,842 DEBUG Processing 194/515 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,038 DEBUG Processing 177/527 atomic regions from SNP 52877 to 53477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:25,158 DEBUG Processing 195/515 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,352 DEBUG Processing 178/527 atomic regions from SNP 53177 to 53777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:25,478 DEBUG Processing 196/515 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,660 DEBUG Processing 179/527 atomic regions from SNP 53477 to 54077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:25,796 DEBUG Processing 197/515 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:25,974 DEBUG Processing 180/527 atomic regions from SNP 53777 to 54377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:26,011 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 10:02:26,041 DEBUG chr19: Signal quantile: 0.983. signal threshold: 16. Best RMSEA: 0.008 2025-01-31 10:02:26,125 DEBUG Processing 198/515 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,280 DEBUG Processing 181/527 atomic regions from SNP 54077 to 54677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:26,392 DEBUG Processing 199/515 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,567 DEBUG Processing 182/527 atomic regions from SNP 54377 to 54977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:26,653 DEBUG Processing 200/515 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:26,858 DEBUG Processing 183/527 atomic regions from SNP 54677 to 55277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:26,915 DEBUG Processing 201/515 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,138 DEBUG Processing 184/527 atomic regions from SNP 54977 to 55577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:27,190 DEBUG Processing 202/515 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,420 DEBUG Processing 185/527 atomic regions from SNP 55277 to 55877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:27,447 DEBUG Processing 203/515 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,689 DEBUG Processing 186/527 atomic regions from SNP 55577 to 56177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:27,743 DEBUG Processing 204/515 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:27,905 DEBUG chr19 total SNP count: 102376 2025-01-31 10:02:27,905 DEBUG chr19 length: 61431566 2025-01-31 10:02:27,905 DEBUG ----------------------------------------- 2025-01-31 10:02:27,905 INFO Processing SNPs in chr19 2025-01-31 10:02:27,954 DEBUG Processing 187/527 atomic regions from SNP 55877 to 56477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:28,010 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 102376)] 2025-01-31 10:02:28,042 DEBUG Processing 205/515 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:28,081 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 10:02:28,214 DEBUG Processing 188/527 atomic regions from SNP 56177 to 56777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:28,331 DEBUG Processing 206/515 atomic regions from SNP 61705 to 62306 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:28,476 DEBUG Processing 189/527 atomic regions from SNP 56477 to 57077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:28,621 DEBUG Processing 207/515 atomic regions from SNP 62006 to 62607 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:28,758 DEBUG Processing 190/527 atomic regions from SNP 56777 to 57377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:28,887 DEBUG Processing 208/515 atomic regions from SNP 62307 to 62908 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,032 DEBUG Processing 191/527 atomic regions from SNP 57077 to 57677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:29,152 DEBUG Processing 209/515 atomic regions from SNP 62608 to 63209 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,250 DEBUG Processing 192/527 atomic regions from SNP 57377 to 57977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:29,337 DEBUG Processing 210/515 atomic regions from SNP 62909 to 63510 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,494 DEBUG Processing 193/527 atomic regions from SNP 57677 to 58277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:29,581 DEBUG Processing 211/515 atomic regions from SNP 63210 to 63811 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,726 DEBUG Processing 194/527 atomic regions from SNP 57977 to 58577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:29,827 DEBUG Processing 212/515 atomic regions from SNP 63511 to 64112 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:29,969 DEBUG Processing 195/527 atomic regions from SNP 58277 to 58877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:30,071 DEBUG Processing 213/515 atomic regions from SNP 63812 to 64413 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,216 DEBUG Processing 196/527 atomic regions from SNP 58577 to 59177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:30,332 DEBUG Processing 214/515 atomic regions from SNP 64113 to 64714 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,469 DEBUG Processing 197/527 atomic regions from SNP 58877 to 59477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:30,568 DEBUG Processing 215/515 atomic regions from SNP 64414 to 65015 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,711 DEBUG Processing 198/527 atomic regions from SNP 59177 to 59777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:30,811 DEBUG Processing 216/515 atomic regions from SNP 64715 to 65316 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:30,951 DEBUG Processing 199/527 atomic regions from SNP 59477 to 60077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:31,054 DEBUG Processing 217/515 atomic regions from SNP 65016 to 65617 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,193 DEBUG Processing 200/527 atomic regions from SNP 59777 to 60377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:31,288 DEBUG Processing 218/515 atomic regions from SNP 65317 to 65918 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,437 DEBUG Processing 201/527 atomic regions from SNP 60077 to 60677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:31,525 DEBUG Processing 219/515 atomic regions from SNP 65618 to 66219 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,684 DEBUG Processing 202/527 atomic regions from SNP 60377 to 60977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:31,786 DEBUG Processing 220/515 atomic regions from SNP 65919 to 66520 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:31,870 DEBUG Processing 203/527 atomic regions from SNP 60677 to 61277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:31,971 DEBUG Processing 221/515 atomic regions from SNP 66220 to 66821 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,113 DEBUG Processing 204/527 atomic regions from SNP 60977 to 61577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:32,204 DEBUG Processing 222/515 atomic regions from SNP 66521 to 67122 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,293 DEBUG Processing 205/527 atomic regions from SNP 61277 to 61877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:32,384 DEBUG Processing 223/515 atomic regions from SNP 66822 to 67423 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,492 DEBUG Processing 206/527 atomic regions from SNP 61577 to 62177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:32,608 DEBUG Processing 224/515 atomic regions from SNP 67123 to 67724 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,724 DEBUG Processing 207/527 atomic regions from SNP 61877 to 62477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:32,848 DEBUG Processing 225/515 atomic regions from SNP 67424 to 68025 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:32,939 DEBUG Processing 208/527 atomic regions from SNP 62177 to 62777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:33,055 DEBUG Processing 226/515 atomic regions from SNP 67725 to 68326 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,222 DEBUG Processing 209/527 atomic regions from SNP 62477 to 63077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:33,304 DEBUG Processing 227/515 atomic regions from SNP 68026 to 68627 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,449 DEBUG Processing 210/527 atomic regions from SNP 62777 to 63377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:33,486 DEBUG Processing 228/515 atomic regions from SNP 68327 to 68928 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,639 DEBUG Processing 211/527 atomic regions from SNP 63077 to 63677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:33,659 DEBUG Processing 229/515 atomic regions from SNP 68628 to 69229 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:33,824 DEBUG Processing 212/527 atomic regions from SNP 63377 to 63977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:33,863 DEBUG Processing 230/515 atomic regions from SNP 68929 to 69530 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,010 DEBUG Processing 213/527 atomic regions from SNP 63677 to 64277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:34,053 DEBUG Processing 231/515 atomic regions from SNP 69230 to 69831 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,188 DEBUG Processing 214/527 atomic regions from SNP 63977 to 64577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:34,228 DEBUG Processing 232/515 atomic regions from SNP 69531 to 70132 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,419 DEBUG Processing 215/527 atomic regions from SNP 64277 to 64877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:34,439 DEBUG Processing 233/515 atomic regions from SNP 69832 to 70433 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,675 DEBUG Processing 216/527 atomic regions from SNP 64577 to 65177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:34,692 DEBUG Processing 234/515 atomic regions from SNP 70133 to 70734 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:34,855 DEBUG Processing 217/527 atomic regions from SNP 64877 to 65477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:34,885 DEBUG Processing 235/515 atomic regions from SNP 70434 to 71035 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,074 DEBUG Processing 218/527 atomic regions from SNP 65177 to 65777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:35,087 DEBUG Processing 236/515 atomic regions from SNP 70735 to 71336 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,306 DEBUG Processing 219/527 atomic regions from SNP 65477 to 66077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:35,317 DEBUG Processing 237/515 atomic regions from SNP 71036 to 71637 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,511 DEBUG Processing 220/527 atomic regions from SNP 65777 to 66377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:35,523 DEBUG Processing 238/515 atomic regions from SNP 71337 to 71938 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:35,762 DEBUG Processing 221/527 atomic regions from SNP 66077 to 66677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:35,778 DEBUG Processing 239/515 atomic regions from SNP 71638 to 72239 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,005 DEBUG Processing 222/527 atomic regions from SNP 66377 to 66977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:36,033 DEBUG Processing 240/515 atomic regions from SNP 71939 to 72540 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,251 DEBUG Processing 223/527 atomic regions from SNP 66677 to 67277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:36,280 DEBUG Processing 241/515 atomic regions from SNP 72240 to 72841 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,507 DEBUG Processing 224/527 atomic regions from SNP 66977 to 67577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:36,558 DEBUG Processing 242/515 atomic regions from SNP 72541 to 73142 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,709 DEBUG Processing 225/527 atomic regions from SNP 67277 to 67877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:36,745 DEBUG Processing 243/515 atomic regions from SNP 72842 to 73443 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:36,928 DEBUG Processing 226/527 atomic regions from SNP 67577 to 68177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:36,939 DEBUG Processing 244/515 atomic regions from SNP 73143 to 73744 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,136 DEBUG Processing 227/527 atomic regions from SNP 67877 to 68477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:37,142 DEBUG Processing 245/515 atomic regions from SNP 73444 to 74045 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,370 DEBUG Processing 246/515 atomic regions from SNP 73745 to 74346 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,375 DEBUG Processing 228/527 atomic regions from SNP 68177 to 68777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:37,635 DEBUG Processing 247/515 atomic regions from SNP 74046 to 74647 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,652 DEBUG Processing 229/527 atomic regions from SNP 68477 to 69077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:37,904 DEBUG Processing 248/515 atomic regions from SNP 74347 to 74948 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:37,941 DEBUG Processing 230/527 atomic regions from SNP 68777 to 69377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:38,178 DEBUG Processing 249/515 atomic regions from SNP 74648 to 75249 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,230 DEBUG Processing 231/527 atomic regions from SNP 69077 to 69677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:38,470 DEBUG Processing 250/515 atomic regions from SNP 74949 to 75550 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,517 DEBUG Processing 232/527 atomic regions from SNP 69377 to 69977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:38,731 DEBUG Processing 251/515 atomic regions from SNP 75250 to 75851 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:38,803 DEBUG Processing 233/527 atomic regions from SNP 69677 to 70277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:39,004 DEBUG Processing 252/515 atomic regions from SNP 75551 to 76152 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,073 DEBUG Processing 234/527 atomic regions from SNP 69977 to 70577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:39,279 DEBUG Processing 253/515 atomic regions from SNP 75852 to 76453 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,339 DEBUG Processing 235/527 atomic regions from SNP 70277 to 70877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:39,544 DEBUG Processing 254/515 atomic regions from SNP 76153 to 76754 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,603 DEBUG Processing 236/527 atomic regions from SNP 70577 to 71177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:39,812 DEBUG Processing 255/515 atomic regions from SNP 76454 to 77055 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:39,882 DEBUG Processing 237/527 atomic regions from SNP 70877 to 71477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:40,079 DEBUG Processing 256/515 atomic regions from SNP 76755 to 77356 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,175 DEBUG Processing 238/527 atomic regions from SNP 71177 to 71777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:40,348 DEBUG Processing 257/515 atomic regions from SNP 77056 to 77657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,463 DEBUG Segmenting atomic regions: 2025-01-31 10:02:40,481 DEBUG Processing 239/527 atomic regions from SNP 71477 to 72077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:40,509 DEBUG Processing 1/340 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,599 DEBUG Processing 258/515 atomic regions from SNP 77357 to 77958 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,743 DEBUG Processing 2/340 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:40,756 DEBUG Processing 240/527 atomic regions from SNP 71777 to 72377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:40,880 DEBUG Processing 259/515 atomic regions from SNP 77658 to 78259 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:40,964 DEBUG Processing 3/340 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,045 DEBUG Processing 241/527 atomic regions from SNP 72077 to 72677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:41,152 DEBUG Processing 260/515 atomic regions from SNP 77959 to 78560 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,197 DEBUG Processing 4/340 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,300 DEBUG Processing 242/527 atomic regions from SNP 72377 to 72977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:41,383 DEBUG Processing 261/515 atomic regions from SNP 78260 to 78861 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,418 DEBUG Processing 5/340 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,577 DEBUG Processing 243/527 atomic regions from SNP 72677 to 73277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:41,624 DEBUG Processing 262/515 atomic regions from SNP 78561 to 79162 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,663 DEBUG Processing 6/340 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:41,863 DEBUG Processing 244/527 atomic regions from SNP 72977 to 73577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:41,870 DEBUG Processing 263/515 atomic regions from SNP 78862 to 79463 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:41,903 DEBUG Processing 7/340 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,116 DEBUG Processing 264/515 atomic regions from SNP 79163 to 79764 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,140 DEBUG Processing 8/340 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,150 DEBUG Processing 245/527 atomic regions from SNP 73277 to 73877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:42,374 DEBUG Processing 9/340 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,380 DEBUG Processing 265/515 atomic regions from SNP 79464 to 80065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,444 DEBUG Processing 246/527 atomic regions from SNP 73577 to 74177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:42,608 DEBUG Processing 10/340 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,629 DEBUG Processing 266/515 atomic regions from SNP 79765 to 80365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,692 DEBUG Processing 247/527 atomic regions from SNP 73877 to 74477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:42,850 DEBUG Processing 11/340 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:42,896 DEBUG Processing 267/515 atomic regions from SNP 80065 to 80665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:42,974 DEBUG Processing 248/527 atomic regions from SNP 74177 to 74777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:43,110 DEBUG Processing 12/340 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,202 DEBUG Processing 268/515 atomic regions from SNP 80365 to 80965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:43,289 DEBUG Processing 249/527 atomic regions from SNP 74477 to 75077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:43,355 DEBUG Processing 13/340 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,448 DEBUG Processing 269/515 atomic regions from SNP 80665 to 81265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:43,631 DEBUG Processing 14/340 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,632 DEBUG Processing 250/527 atomic regions from SNP 74777 to 75377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:43,722 DEBUG Processing 270/515 atomic regions from SNP 80965 to 81565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:43,898 DEBUG Processing 15/340 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:43,958 DEBUG Processing 251/527 atomic regions from SNP 75077 to 75677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:43,987 DEBUG Processing 271/515 atomic regions from SNP 81265 to 81865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,153 DEBUG Processing 16/340 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,251 DEBUG Processing 272/515 atomic regions from SNP 81565 to 82165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,276 DEBUG Processing 252/527 atomic regions from SNP 75377 to 75977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:44,414 DEBUG Processing 17/340 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,517 DEBUG Processing 273/515 atomic regions from SNP 81865 to 82465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,591 DEBUG Processing 253/527 atomic regions from SNP 75677 to 76277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:44,677 DEBUG Processing 18/340 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:44,808 DEBUG Processing 274/515 atomic regions from SNP 82165 to 82765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:44,881 DEBUG Processing 254/527 atomic regions from SNP 75977 to 76577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:44,930 DEBUG Processing 19/340 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,090 DEBUG Processing 275/515 atomic regions from SNP 82465 to 83065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,170 DEBUG Processing 255/527 atomic regions from SNP 76277 to 76877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:45,196 DEBUG Processing 20/340 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,374 DEBUG Processing 276/515 atomic regions from SNP 82765 to 83365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,431 DEBUG Processing 256/527 atomic regions from SNP 76577 to 77177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:45,438 DEBUG Processing 21/340 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,617 DEBUG Processing 277/515 atomic regions from SNP 83065 to 83665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,680 DEBUG Processing 22/340 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,689 DEBUG Processing 257/527 atomic regions from SNP 76877 to 77477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:45,892 DEBUG Processing 278/515 atomic regions from SNP 83365 to 83965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:45,932 DEBUG Processing 23/340 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:45,959 DEBUG Processing 258/527 atomic regions from SNP 77177 to 77777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:46,111 DEBUG Processing 279/515 atomic regions from SNP 83665 to 84265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,176 DEBUG Processing 24/340 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,202 DEBUG Processing 259/527 atomic regions from SNP 77477 to 78077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:46,379 DEBUG Processing 280/515 atomic regions from SNP 83965 to 84565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,419 DEBUG Processing 25/340 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,463 DEBUG Processing 260/527 atomic regions from SNP 77777 to 78377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:46,634 DEBUG Processing 281/515 atomic regions from SNP 84265 to 84865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,657 DEBUG Processing 26/340 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,720 DEBUG Processing 261/527 atomic regions from SNP 78077 to 78677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:46,880 DEBUG Processing 282/515 atomic regions from SNP 84565 to 85165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:46,883 DEBUG Processing 27/340 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:46,972 DEBUG Processing 262/527 atomic regions from SNP 78377 to 78977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:47,098 DEBUG Processing 28/340 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,133 DEBUG Processing 283/515 atomic regions from SNP 84865 to 85465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:47,231 DEBUG Processing 263/527 atomic regions from SNP 78677 to 79277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:47,320 DEBUG Processing 29/340 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,421 DEBUG Processing 284/515 atomic regions from SNP 85165 to 85765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:47,502 DEBUG Processing 264/527 atomic regions from SNP 78977 to 79577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:47,535 DEBUG Processing 30/340 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,677 DEBUG Processing 285/515 atomic regions from SNP 85465 to 86065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:47,745 DEBUG Processing 31/340 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:47,763 DEBUG Processing 265/527 atomic regions from SNP 79277 to 79877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:48,023 DEBUG Processing 32/340 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,031 DEBUG Processing 286/515 atomic regions from SNP 85765 to 86365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,136 DEBUG Processing 266/527 atomic regions from SNP 79577 to 80177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:48,284 DEBUG Processing 33/340 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,332 DEBUG Processing 287/515 atomic regions from SNP 86065 to 86665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,412 DEBUG Processing 267/527 atomic regions from SNP 79877 to 80477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:48,536 DEBUG Processing 34/340 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,603 DEBUG Processing 288/515 atomic regions from SNP 86365 to 86965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,685 DEBUG Processing 268/527 atomic regions from SNP 80177 to 80777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:48,780 DEBUG Processing 35/340 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:48,863 DEBUG Processing 289/515 atomic regions from SNP 86665 to 87265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:48,958 DEBUG Processing 269/527 atomic regions from SNP 80477 to 81077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:49,000 DEBUG Processing 36/340 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,121 DEBUG Processing 290/515 atomic regions from SNP 86965 to 87565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,207 DEBUG Processing 37/340 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,230 DEBUG Processing 270/527 atomic regions from SNP 80777 to 81377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:49,375 DEBUG Processing 291/515 atomic regions from SNP 87265 to 87865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,436 DEBUG Processing 38/340 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,515 DEBUG Processing 271/527 atomic regions from SNP 81077 to 81677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:49,644 DEBUG Processing 292/515 atomic regions from SNP 87565 to 88165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,684 DEBUG Processing 39/340 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,784 DEBUG Processing 272/527 atomic regions from SNP 81377 to 81977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:49,852 DEBUG Processing 293/515 atomic regions from SNP 87865 to 88465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:49,890 DEBUG Processing 40/340 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:49,979 DEBUG Processing 273/527 atomic regions from SNP 81677 to 82277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:50,042 DEBUG Processing 294/515 atomic regions from SNP 88165 to 88765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,079 DEBUG Processing 41/340 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,158 DEBUG Processing 274/527 atomic regions from SNP 81977 to 82577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:50,214 DEBUG Processing 295/515 atomic regions from SNP 88465 to 89065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,263 DEBUG Processing 42/340 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,341 DEBUG Processing 275/527 atomic regions from SNP 82277 to 82877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:50,387 DEBUG Processing 296/515 atomic regions from SNP 88765 to 89365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,446 DEBUG Processing 43/340 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,523 DEBUG Processing 276/527 atomic regions from SNP 82577 to 83177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:50,564 DEBUG Processing 297/515 atomic regions from SNP 89065 to 89665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,624 DEBUG Processing 44/340 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,706 DEBUG Processing 277/527 atomic regions from SNP 82877 to 83477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:50,747 DEBUG Processing 298/515 atomic regions from SNP 89365 to 89965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,804 DEBUG Processing 45/340 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:50,896 DEBUG Processing 278/527 atomic regions from SNP 83177 to 83777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:50,935 DEBUG Processing 299/515 atomic regions from SNP 89665 to 90265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:50,969 DEBUG Processing 46/340 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,084 DEBUG Processing 279/527 atomic regions from SNP 83477 to 84077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:51,109 DEBUG Processing 300/515 atomic regions from SNP 89965 to 90565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,130 DEBUG Processing 47/340 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,306 DEBUG Processing 280/527 atomic regions from SNP 83777 to 84377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:51,316 DEBUG Processing 48/340 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,339 DEBUG Processing 301/515 atomic regions from SNP 90265 to 90865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,510 DEBUG Processing 49/340 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,528 DEBUG Processing 281/527 atomic regions from SNP 84077 to 84677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:51,554 DEBUG Processing 302/515 atomic regions from SNP 90565 to 91165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,726 DEBUG Processing 50/340 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:51,801 DEBUG Processing 303/515 atomic regions from SNP 90865 to 91465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:51,802 DEBUG Processing 282/527 atomic regions from SNP 84377 to 84977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:51,955 DEBUG Processing 51/340 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:52,078 DEBUG Processing 283/527 atomic regions from SNP 84677 to 85277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:52,082 DEBUG Processing 304/515 atomic regions from SNP 91165 to 91765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,172 DEBUG Processing 52/340 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:52,387 DEBUG Processing 305/515 atomic regions from SNP 91465 to 92065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,388 DEBUG Processing 284/527 atomic regions from SNP 84977 to 85577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:52,391 DEBUG Processing 53/340 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:52,631 DEBUG Processing 54/340 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:52,689 DEBUG Processing 306/515 atomic regions from SNP 91765 to 92365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,691 DEBUG Processing 285/527 atomic regions from SNP 85277 to 85877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:52,847 DEBUG Processing 55/340 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:52,923 DEBUG Processing 307/515 atomic regions from SNP 92065 to 92665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:52,948 DEBUG Processing 286/527 atomic regions from SNP 85577 to 86177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:53,020 DEBUG Processing 56/340 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:53,149 DEBUG Processing 308/515 atomic regions from SNP 92365 to 92965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,186 DEBUG Processing 57/340 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:53,187 DEBUG Processing 287/527 atomic regions from SNP 85877 to 86477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:53,330 DEBUG Processing 309/515 atomic regions from SNP 92665 to 93265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,350 DEBUG Processing 58/340 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:53,371 DEBUG Processing 288/527 atomic regions from SNP 86177 to 86777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:53,506 DEBUG Processing 310/515 atomic regions from SNP 92965 to 93565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,513 DEBUG Processing 59/340 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:53,553 DEBUG Processing 289/527 atomic regions from SNP 86477 to 87077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:53,674 DEBUG Processing 60/340 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:53,683 DEBUG Processing 311/515 atomic regions from SNP 93265 to 93865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,736 DEBUG Processing 290/527 atomic regions from SNP 86777 to 87377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:53,835 DEBUG Processing 61/340 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:53,862 DEBUG Processing 312/515 atomic regions from SNP 93565 to 94165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:53,920 DEBUG Processing 291/527 atomic regions from SNP 87077 to 87677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:53,999 DEBUG Processing 62/340 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:54,038 DEBUG Processing 313/515 atomic regions from SNP 93865 to 94465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,107 DEBUG Processing 292/527 atomic regions from SNP 87377 to 87977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:54,158 DEBUG Processing 63/340 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:54,236 DEBUG Processing 314/515 atomic regions from SNP 94165 to 94765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,291 DEBUG Processing 293/527 atomic regions from SNP 87677 to 88277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:54,319 DEBUG Processing 64/340 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:54,441 DEBUG Processing 315/515 atomic regions from SNP 94465 to 95065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,480 DEBUG Processing 294/527 atomic regions from SNP 87977 to 88577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:54,482 DEBUG Processing 65/340 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:54,640 DEBUG Processing 66/340 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:54,644 DEBUG Processing 316/515 atomic regions from SNP 94765 to 95365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,664 DEBUG Processing 295/527 atomic regions from SNP 88277 to 88877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:54,801 DEBUG Processing 67/340 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:54,830 DEBUG Processing 317/515 atomic regions from SNP 95065 to 95665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:54,849 DEBUG Processing 296/527 atomic regions from SNP 88577 to 89177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:54,968 DEBUG Processing 68/340 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:55,014 DEBUG Processing 318/515 atomic regions from SNP 95365 to 95965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,038 DEBUG Processing 297/527 atomic regions from SNP 88877 to 89477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:55,129 DEBUG Processing 69/340 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:55,188 DEBUG Processing 319/515 atomic regions from SNP 95665 to 96265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,220 DEBUG Processing 298/527 atomic regions from SNP 89177 to 89777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:55,286 DEBUG Processing 70/340 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:55,362 DEBUG Processing 320/515 atomic regions from SNP 95965 to 96565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,435 DEBUG Processing 299/527 atomic regions from SNP 89477 to 90077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:55,447 DEBUG Processing 71/340 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:55,538 DEBUG Processing 321/515 atomic regions from SNP 96265 to 96865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,604 DEBUG Processing 72/340 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:55,653 DEBUG Processing 300/527 atomic regions from SNP 89777 to 90377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:55,713 DEBUG Processing 322/515 atomic regions from SNP 96565 to 97165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,768 DEBUG Processing 73/340 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:55,874 DEBUG Processing 301/527 atomic regions from SNP 90077 to 90677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:55,888 DEBUG Processing 323/515 atomic regions from SNP 96865 to 97465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:55,934 DEBUG Processing 74/340 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,062 DEBUG Processing 324/515 atomic regions from SNP 97165 to 97765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,089 DEBUG Processing 302/527 atomic regions from SNP 90377 to 90977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:56,098 DEBUG Processing 75/340 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,237 DEBUG Processing 325/515 atomic regions from SNP 97465 to 98065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,263 DEBUG Processing 76/340 atomic regions from SNP 22575 to 23175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,311 DEBUG Processing 303/527 atomic regions from SNP 90677 to 91277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:56,414 DEBUG Processing 326/515 atomic regions from SNP 97765 to 98365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,426 DEBUG Processing 77/340 atomic regions from SNP 22875 to 23475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,540 DEBUG Processing 304/527 atomic regions from SNP 90977 to 91577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:56,585 DEBUG Processing 78/340 atomic regions from SNP 23175 to 23775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,589 DEBUG Processing 327/515 atomic regions from SNP 98065 to 98665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,749 DEBUG Processing 79/340 atomic regions from SNP 23475 to 24075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,759 DEBUG Processing 305/527 atomic regions from SNP 91277 to 91877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:56,766 DEBUG Processing 328/515 atomic regions from SNP 98365 to 98965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,920 DEBUG Processing 80/340 atomic regions from SNP 23775 to 24375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:56,957 DEBUG Processing 329/515 atomic regions from SNP 98665 to 99265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:56,984 DEBUG Processing 306/527 atomic regions from SNP 91577 to 92177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:57,083 DEBUG Processing 81/340 atomic regions from SNP 24075 to 24675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:57,137 DEBUG Processing 330/515 atomic regions from SNP 98965 to 99565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,194 DEBUG Processing 307/527 atomic regions from SNP 91877 to 92477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:57,238 DEBUG Processing 82/340 atomic regions from SNP 24375 to 24975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:57,312 DEBUG Processing 331/515 atomic regions from SNP 99265 to 99865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,391 DEBUG Processing 308/527 atomic regions from SNP 92177 to 92777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:57,396 DEBUG Processing 83/340 atomic regions from SNP 24675 to 25275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:57,486 DEBUG Processing 332/515 atomic regions from SNP 99565 to 100165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,557 DEBUG Processing 84/340 atomic regions from SNP 24975 to 25575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:57,573 DEBUG Processing 309/527 atomic regions from SNP 92477 to 93077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:57,665 DEBUG Processing 333/515 atomic regions from SNP 99865 to 100465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,716 DEBUG Processing 85/340 atomic regions from SNP 25275 to 25875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:57,758 DEBUG Processing 310/527 atomic regions from SNP 92777 to 93377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:57,842 DEBUG Processing 334/515 atomic regions from SNP 100165 to 100765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:57,878 DEBUG Processing 86/340 atomic regions from SNP 25575 to 26175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:57,948 DEBUG Processing 311/527 atomic regions from SNP 93077 to 93677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:58,021 DEBUG Processing 335/515 atomic regions from SNP 100465 to 101065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,041 DEBUG Processing 87/340 atomic regions from SNP 25875 to 26475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:58,148 DEBUG Processing 312/527 atomic regions from SNP 93377 to 93977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:58,230 DEBUG Processing 88/340 atomic regions from SNP 26175 to 26775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:58,248 DEBUG Processing 336/515 atomic regions from SNP 100765 to 101365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,387 DEBUG Processing 313/527 atomic regions from SNP 93677 to 94277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:58,458 DEBUG Processing 89/340 atomic regions from SNP 26475 to 27075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:58,536 DEBUG Processing 337/515 atomic regions from SNP 101065 to 101665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,660 DEBUG Processing 314/527 atomic regions from SNP 93977 to 94577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:58,701 DEBUG Processing 90/340 atomic regions from SNP 26775 to 27375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:58,854 DEBUG Processing 338/515 atomic regions from SNP 101365 to 101965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:58,930 DEBUG Processing 91/340 atomic regions from SNP 27075 to 27675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:58,938 DEBUG Processing 315/527 atomic regions from SNP 94277 to 94877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:59,137 DEBUG Processing 92/340 atomic regions from SNP 27375 to 27975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:59,171 DEBUG Processing 339/515 atomic regions from SNP 101665 to 102265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,183 DEBUG Processing 316/527 atomic regions from SNP 94577 to 95177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:59,311 DEBUG Processing 93/340 atomic regions from SNP 27675 to 28275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:59,411 DEBUG Processing 340/515 atomic regions from SNP 101965 to 102565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,416 DEBUG Processing 317/527 atomic regions from SNP 94877 to 95477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:59,487 DEBUG Processing 94/340 atomic regions from SNP 27975 to 28575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:59,640 DEBUG Processing 318/527 atomic regions from SNP 95177 to 95777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:59,655 DEBUG Processing 341/515 atomic regions from SNP 102265 to 102865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:02:59,702 DEBUG Processing 95/340 atomic regions from SNP 28275 to 28875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:59,882 DEBUG Processing 96/340 atomic regions from SNP 28575 to 29175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:02:59,884 DEBUG Processing 319/527 atomic regions from SNP 95477 to 96077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:02:59,911 DEBUG Processing 342/515 atomic regions from SNP 102565 to 103165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,051 DEBUG Processing 97/340 atomic regions from SNP 28875 to 29475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:00,075 DEBUG Processing 320/527 atomic regions from SNP 95777 to 96377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:00,137 DEBUG Processing 343/515 atomic regions from SNP 102865 to 103465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,227 DEBUG Processing 98/340 atomic regions from SNP 29175 to 29775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:00,295 DEBUG Processing 321/527 atomic regions from SNP 96077 to 96677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:00,420 DEBUG Processing 344/515 atomic regions from SNP 103165 to 103765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,423 DEBUG Processing 99/340 atomic regions from SNP 29475 to 30075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:00,555 DEBUG Processing 322/527 atomic regions from SNP 96377 to 96977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:00,634 DEBUG Processing 100/340 atomic regions from SNP 29775 to 30375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:00,729 DEBUG Processing 345/515 atomic regions from SNP 103465 to 104065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,766 DEBUG Processing 323/527 atomic regions from SNP 96677 to 97277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:00,800 DEBUG Processing 101/340 atomic regions from SNP 30075 to 30675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:00,980 DEBUG Processing 346/515 atomic regions from SNP 103765 to 104365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:00,988 DEBUG Processing 102/340 atomic regions from SNP 30375 to 30975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:01,005 DEBUG Processing 324/527 atomic regions from SNP 96977 to 97577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:01,194 DEBUG Processing 103/340 atomic regions from SNP 30675 to 31275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:01,251 DEBUG Processing 347/515 atomic regions from SNP 104065 to 104665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,265 DEBUG Processing 325/527 atomic regions from SNP 97277 to 97877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:01,414 DEBUG Processing 104/340 atomic regions from SNP 30975 to 31575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:01,514 DEBUG Processing 326/527 atomic regions from SNP 97577 to 98177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:01,515 DEBUG Processing 348/515 atomic regions from SNP 104365 to 104965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,587 DEBUG Processing 105/340 atomic regions from SNP 31275 to 31875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:01,774 DEBUG Processing 349/515 atomic regions from SNP 104665 to 105265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:01,782 DEBUG Processing 327/527 atomic regions from SNP 97877 to 98477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:01,813 DEBUG Processing 106/340 atomic regions from SNP 31575 to 32175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:02,028 DEBUG Processing 107/340 atomic regions from SNP 31875 to 32475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:02,048 DEBUG Processing 350/515 atomic regions from SNP 104965 to 105565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,058 DEBUG Processing 328/527 atomic regions from SNP 98177 to 98777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:02,243 DEBUG Processing 108/340 atomic regions from SNP 32175 to 32775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:02,331 DEBUG Processing 351/515 atomic regions from SNP 105265 to 105865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,336 DEBUG Processing 329/527 atomic regions from SNP 98477 to 99077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:02,429 DEBUG Processing 109/340 atomic regions from SNP 32475 to 33075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:02,518 DEBUG Processing 352/515 atomic regions from SNP 105565 to 106165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,524 DEBUG Processing 330/527 atomic regions from SNP 98777 to 99377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:02,594 DEBUG Processing 110/340 atomic regions from SNP 32775 to 33375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:02,696 DEBUG Processing 353/515 atomic regions from SNP 105865 to 106465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,712 DEBUG Processing 331/527 atomic regions from SNP 99077 to 99677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:02,755 DEBUG Processing 111/340 atomic regions from SNP 33075 to 33675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:02,881 DEBUG Processing 354/515 atomic regions from SNP 106165 to 106765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:02,902 DEBUG Processing 332/527 atomic regions from SNP 99377 to 99977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:02,917 DEBUG Processing 112/340 atomic regions from SNP 33375 to 33975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:03,122 DEBUG Processing 355/515 atomic regions from SNP 106465 to 107065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,125 DEBUG Processing 113/340 atomic regions from SNP 33675 to 34275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:03,161 DEBUG Processing 333/527 atomic regions from SNP 99677 to 100277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:03,301 DEBUG Processing 114/340 atomic regions from SNP 33975 to 34575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:03,320 DEBUG Processing 356/515 atomic regions from SNP 106765 to 107365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,356 DEBUG Processing 334/527 atomic regions from SNP 99977 to 100577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:03,499 DEBUG Processing 115/340 atomic regions from SNP 34275 to 34875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:03,528 DEBUG Processing 357/515 atomic regions from SNP 107065 to 107665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,539 DEBUG Processing 335/527 atomic regions from SNP 100277 to 100877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:03,723 DEBUG Processing 116/340 atomic regions from SNP 34575 to 35175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:03,774 DEBUG Processing 358/515 atomic regions from SNP 107365 to 107965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:03,775 DEBUG Processing 336/527 atomic regions from SNP 100577 to 101177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:03,937 DEBUG Processing 117/340 atomic regions from SNP 34875 to 35475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:04,033 DEBUG Processing 359/515 atomic regions from SNP 107665 to 108265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,038 DEBUG Processing 337/527 atomic regions from SNP 100877 to 101477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:04,144 DEBUG Processing 118/340 atomic regions from SNP 35175 to 35775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:04,301 DEBUG Processing 360/515 atomic regions from SNP 107965 to 108565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,309 DEBUG Processing 338/527 atomic regions from SNP 101177 to 101777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:04,362 DEBUG Processing 119/340 atomic regions from SNP 35475 to 36075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:04,563 DEBUG Processing 361/515 atomic regions from SNP 108265 to 108865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,567 DEBUG Processing 120/340 atomic regions from SNP 35775 to 36375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:04,570 DEBUG Processing 339/527 atomic regions from SNP 101477 to 102077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:04,753 DEBUG Processing 121/340 atomic regions from SNP 36075 to 36675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:04,793 DEBUG Processing 340/527 atomic regions from SNP 101777 to 102377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:04,813 DEBUG Processing 362/515 atomic regions from SNP 108565 to 109165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:04,939 DEBUG Processing 122/340 atomic regions from SNP 36375 to 36975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:04,985 DEBUG Processing 341/527 atomic regions from SNP 102077 to 102677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:05,004 DEBUG Processing 363/515 atomic regions from SNP 108865 to 109465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,118 DEBUG Processing 123/340 atomic regions from SNP 36675 to 37275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:05,177 DEBUG Processing 342/527 atomic regions from SNP 102377 to 102977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:05,188 DEBUG Processing 364/515 atomic regions from SNP 109165 to 109765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,322 DEBUG Processing 124/340 atomic regions from SNP 36975 to 37575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:05,383 DEBUG Processing 365/515 atomic regions from SNP 109465 to 110065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,406 DEBUG Processing 343/527 atomic regions from SNP 102677 to 103277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:05,479 DEBUG Processing 125/340 atomic regions from SNP 37275 to 37875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:05,558 DEBUG Processing 366/515 atomic regions from SNP 109765 to 110365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,590 DEBUG Processing 344/527 atomic regions from SNP 102977 to 103577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:05,633 DEBUG Processing 126/340 atomic regions from SNP 37575 to 38175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:05,731 DEBUG Processing 367/515 atomic regions from SNP 110065 to 110665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,774 DEBUG Processing 345/527 atomic regions from SNP 103277 to 103877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:05,792 DEBUG Processing 127/340 atomic regions from SNP 37875 to 38475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:05,911 DEBUG Processing 368/515 atomic regions from SNP 110365 to 110965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:05,962 DEBUG Processing 128/340 atomic regions from SNP 38175 to 38775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:05,969 DEBUG Processing 346/527 atomic regions from SNP 103577 to 104177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:06,094 DEBUG Processing 369/515 atomic regions from SNP 110665 to 111265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,122 DEBUG Processing 129/340 atomic regions from SNP 38475 to 39075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:06,154 DEBUG Processing 347/527 atomic regions from SNP 103877 to 104477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:06,277 DEBUG Processing 370/515 atomic regions from SNP 110965 to 111565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,280 DEBUG Processing 130/340 atomic regions from SNP 38775 to 39375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:06,345 DEBUG Processing 348/527 atomic regions from SNP 104177 to 104777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:06,441 DEBUG Processing 131/340 atomic regions from SNP 39075 to 39675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:06,470 DEBUG Processing 371/515 atomic regions from SNP 111265 to 111865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,532 DEBUG Processing 349/527 atomic regions from SNP 104477 to 105077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:06,603 DEBUG Processing 132/340 atomic regions from SNP 39375 to 39975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:06,662 DEBUG Processing 372/515 atomic regions from SNP 111565 to 112165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,718 DEBUG Processing 350/527 atomic regions from SNP 104777 to 105377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:06,764 DEBUG Processing 133/340 atomic regions from SNP 39675 to 40275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:06,845 DEBUG Processing 373/515 atomic regions from SNP 111865 to 112465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:06,902 DEBUG Processing 351/527 atomic regions from SNP 105077 to 105677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:06,922 DEBUG Processing 134/340 atomic regions from SNP 39975 to 40575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,020 DEBUG Processing 374/515 atomic regions from SNP 112165 to 112765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,081 DEBUG Processing 135/340 atomic regions from SNP 40275 to 40875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,084 DEBUG Processing 352/527 atomic regions from SNP 105377 to 105977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:07,208 DEBUG Processing 375/515 atomic regions from SNP 112465 to 113065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,251 DEBUG Processing 136/340 atomic regions from SNP 40575 to 41175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,276 DEBUG Processing 353/527 atomic regions from SNP 105677 to 106277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:07,384 DEBUG Processing 376/515 atomic regions from SNP 112765 to 113365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,405 DEBUG Processing 137/340 atomic regions from SNP 40875 to 41475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,457 DEBUG Processing 354/527 atomic regions from SNP 105977 to 106577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:07,557 DEBUG Processing 377/515 atomic regions from SNP 113065 to 113665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,561 DEBUG Processing 138/340 atomic regions from SNP 41175 to 41775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,632 DEBUG Processing 355/527 atomic regions from SNP 106277 to 106877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:07,715 DEBUG Processing 139/340 atomic regions from SNP 41475 to 42075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,731 DEBUG Processing 378/515 atomic regions from SNP 113365 to 113965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:07,831 DEBUG Processing 356/527 atomic regions from SNP 106577 to 107177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:07,875 DEBUG Processing 140/340 atomic regions from SNP 41775 to 42375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:07,936 DEBUG Processing 379/515 atomic regions from SNP 113665 to 114265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,041 DEBUG Processing 141/340 atomic regions from SNP 42075 to 42675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:08,045 DEBUG Processing 357/527 atomic regions from SNP 106877 to 107477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:08,150 DEBUG Processing 380/515 atomic regions from SNP 113965 to 114565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,199 DEBUG Processing 142/340 atomic regions from SNP 42375 to 42975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:08,255 DEBUG Processing 358/527 atomic regions from SNP 107177 to 107777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:08,360 DEBUG Processing 143/340 atomic regions from SNP 42675 to 43275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:08,361 DEBUG Processing 381/515 atomic regions from SNP 114265 to 114865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,475 DEBUG Processing 359/527 atomic regions from SNP 107477 to 108077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:08,527 DEBUG Processing 144/340 atomic regions from SNP 42975 to 43575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:08,576 DEBUG Processing 382/515 atomic regions from SNP 114565 to 115165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,664 DEBUG Processing 360/527 atomic regions from SNP 107777 to 108377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:08,690 DEBUG Processing 145/340 atomic regions from SNP 43275 to 43875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:08,776 DEBUG Processing 383/515 atomic regions from SNP 114865 to 115465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:08,854 DEBUG Processing 146/340 atomic regions from SNP 43575 to 44175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:08,855 DEBUG Processing 361/527 atomic regions from SNP 108077 to 108677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:08,953 DEBUG Processing 384/515 atomic regions from SNP 115165 to 115765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,021 DEBUG Processing 147/340 atomic regions from SNP 43875 to 44475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:09,045 DEBUG Processing 362/527 atomic regions from SNP 108377 to 108977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:09,148 DEBUG Processing 385/515 atomic regions from SNP 115465 to 116065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,185 DEBUG Processing 148/340 atomic regions from SNP 44175 to 44775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:09,234 DEBUG Processing 363/527 atomic regions from SNP 108677 to 109277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:09,338 DEBUG Processing 386/515 atomic regions from SNP 115765 to 116365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,354 DEBUG Processing 149/340 atomic regions from SNP 44475 to 45075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:09,422 DEBUG Processing 364/527 atomic regions from SNP 108977 to 109577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:09,519 DEBUG Processing 387/515 atomic regions from SNP 116065 to 116665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,522 DEBUG Processing 150/340 atomic regions from SNP 44775 to 45375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:09,609 DEBUG Processing 365/527 atomic regions from SNP 109277 to 109877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:09,699 DEBUG Processing 388/515 atomic regions from SNP 116365 to 116965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,711 DEBUG Processing 151/340 atomic regions from SNP 45075 to 45675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:09,797 DEBUG Processing 366/527 atomic regions from SNP 109577 to 110177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:09,877 DEBUG Processing 389/515 atomic regions from SNP 116665 to 117265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:09,884 DEBUG Processing 152/340 atomic regions from SNP 45375 to 45975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:09,980 DEBUG Processing 367/527 atomic regions from SNP 109877 to 110477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:10,055 DEBUG Processing 153/340 atomic regions from SNP 45675 to 46275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:10,056 DEBUG Processing 390/515 atomic regions from SNP 116965 to 117565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,167 DEBUG Processing 368/527 atomic regions from SNP 110177 to 110777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:10,234 DEBUG Processing 154/340 atomic regions from SNP 45975 to 46575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:10,252 DEBUG Processing 391/515 atomic regions from SNP 117265 to 117865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,360 DEBUG Processing 369/527 atomic regions from SNP 110477 to 111077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:10,404 DEBUG Processing 155/340 atomic regions from SNP 46275 to 46875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:10,433 DEBUG Processing 392/515 atomic regions from SNP 117565 to 118165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,583 DEBUG Processing 370/527 atomic regions from SNP 110777 to 111377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:10,598 DEBUG Processing 156/340 atomic regions from SNP 46575 to 47175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:10,638 DEBUG Processing 393/515 atomic regions from SNP 117865 to 118465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,789 DEBUG Processing 157/340 atomic regions from SNP 46875 to 47475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:10,811 DEBUG Processing 371/527 atomic regions from SNP 111077 to 111677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:10,828 DEBUG Processing 394/515 atomic regions from SNP 118165 to 118765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:10,965 DEBUG Processing 158/340 atomic regions from SNP 47175 to 47775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,012 DEBUG Processing 395/515 atomic regions from SNP 118465 to 119065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,013 DEBUG Processing 372/527 atomic regions from SNP 111377 to 111977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:11,131 DEBUG Processing 159/340 atomic regions from SNP 47475 to 48075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,194 DEBUG Processing 396/515 atomic regions from SNP 118765 to 119365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,204 DEBUG Processing 373/527 atomic regions from SNP 111677 to 112277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:11,291 DEBUG Processing 160/340 atomic regions from SNP 47775 to 48375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,375 DEBUG Processing 397/515 atomic regions from SNP 119065 to 119665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,393 DEBUG Processing 374/527 atomic regions from SNP 111977 to 112577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:11,451 DEBUG Processing 161/340 atomic regions from SNP 48075 to 48675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,551 DEBUG Processing 398/515 atomic regions from SNP 119365 to 119965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,577 DEBUG Processing 375/527 atomic regions from SNP 112277 to 112877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:11,606 DEBUG Processing 162/340 atomic regions from SNP 48375 to 48975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,754 DEBUG Processing 399/515 atomic regions from SNP 119665 to 120265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:11,766 DEBUG Processing 376/527 atomic regions from SNP 112577 to 113177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:11,770 DEBUG Processing 163/340 atomic regions from SNP 48675 to 49275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,936 DEBUG Processing 164/340 atomic regions from SNP 48975 to 49575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:11,960 DEBUG Processing 377/527 atomic regions from SNP 112877 to 113477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:11,962 DEBUG Processing 400/515 atomic regions from SNP 119965 to 120565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,105 DEBUG Processing 165/340 atomic regions from SNP 49275 to 49875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:12,142 DEBUG Processing 401/515 atomic regions from SNP 120265 to 120865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,180 DEBUG Processing 378/527 atomic regions from SNP 113177 to 113777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:12,265 DEBUG Processing 166/340 atomic regions from SNP 49575 to 50175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:12,316 DEBUG Processing 402/515 atomic regions from SNP 120565 to 121165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,385 DEBUG Processing 379/527 atomic regions from SNP 113477 to 114077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:12,424 DEBUG Processing 167/340 atomic regions from SNP 49875 to 50475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:12,493 DEBUG Processing 403/515 atomic regions from SNP 120865 to 121465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,570 DEBUG Processing 380/527 atomic regions from SNP 113777 to 114377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:12,586 DEBUG Processing 168/340 atomic regions from SNP 50175 to 50775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:12,672 DEBUG Processing 404/515 atomic regions from SNP 121165 to 121765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,755 DEBUG Processing 169/340 atomic regions from SNP 50475 to 51075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:12,759 DEBUG Processing 381/527 atomic regions from SNP 114077 to 114677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:12,854 DEBUG Processing 405/515 atomic regions from SNP 121465 to 122065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:12,944 DEBUG Processing 382/527 atomic regions from SNP 114377 to 114977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:12,950 DEBUG Processing 170/340 atomic regions from SNP 50775 to 51375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:13,035 DEBUG Processing 406/515 atomic regions from SNP 121765 to 122365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,132 DEBUG Processing 383/527 atomic regions from SNP 114677 to 115277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:13,143 DEBUG Processing 171/340 atomic regions from SNP 51075 to 51675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:13,218 DEBUG Processing 407/515 atomic regions from SNP 122065 to 122665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,313 DEBUG Processing 172/340 atomic regions from SNP 51375 to 51975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:13,320 DEBUG Processing 384/527 atomic regions from SNP 114977 to 115577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:13,400 DEBUG Processing 408/515 atomic regions from SNP 122365 to 122965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,474 DEBUG Processing 173/340 atomic regions from SNP 51675 to 52275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:13,508 DEBUG Processing 385/527 atomic regions from SNP 115277 to 115877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:13,587 DEBUG Processing 409/515 atomic regions from SNP 122665 to 123265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,634 DEBUG Processing 174/340 atomic regions from SNP 51975 to 52575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:13,698 DEBUG Processing 386/527 atomic regions from SNP 115577 to 116177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:13,767 DEBUG Processing 410/515 atomic regions from SNP 122965 to 123565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,794 DEBUG Processing 175/340 atomic regions from SNP 52275 to 52875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:13,907 DEBUG Processing 387/527 atomic regions from SNP 115877 to 116477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:13,948 DEBUG Processing 411/515 atomic regions from SNP 123265 to 123865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:13,956 DEBUG Processing 176/340 atomic regions from SNP 52575 to 53175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,119 DEBUG Processing 388/527 atomic regions from SNP 116177 to 116777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:14,126 DEBUG Processing 177/340 atomic regions from SNP 52875 to 53475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,127 DEBUG Processing 412/515 atomic regions from SNP 123565 to 124165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,288 DEBUG Processing 178/340 atomic regions from SNP 53175 to 53775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,303 DEBUG Processing 413/515 atomic regions from SNP 123865 to 124465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,338 DEBUG Processing 389/527 atomic regions from SNP 116477 to 117077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:14,449 DEBUG Processing 179/340 atomic regions from SNP 53475 to 54075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,483 DEBUG Processing 414/515 atomic regions from SNP 124165 to 124765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,542 DEBUG Processing 390/527 atomic regions from SNP 116777 to 117377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:14,608 DEBUG Processing 180/340 atomic regions from SNP 53775 to 54375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,662 DEBUG Processing 415/515 atomic regions from SNP 124465 to 125065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,746 DEBUG Processing 391/527 atomic regions from SNP 117077 to 117677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:14,765 DEBUG Processing 181/340 atomic regions from SNP 54075 to 54675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,838 DEBUG Processing 416/515 atomic regions from SNP 124765 to 125365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:14,922 DEBUG Processing 182/340 atomic regions from SNP 54375 to 54975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:14,957 DEBUG Processing 392/527 atomic regions from SNP 117377 to 117977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:15,043 DEBUG Processing 417/515 atomic regions from SNP 125065 to 125665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,081 DEBUG Processing 183/340 atomic regions from SNP 54675 to 55275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:15,149 DEBUG Processing 393/527 atomic regions from SNP 117677 to 118277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:15,243 DEBUG Processing 184/340 atomic regions from SNP 54975 to 55575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:15,251 DEBUG Processing 418/515 atomic regions from SNP 125365 to 125965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,339 DEBUG Processing 394/527 atomic regions from SNP 117977 to 118577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:15,400 DEBUG Processing 185/340 atomic regions from SNP 55275 to 55875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:15,448 DEBUG Processing 419/515 atomic regions from SNP 125665 to 126265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,527 DEBUG Processing 395/527 atomic regions from SNP 118277 to 118877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:15,562 DEBUG Processing 186/340 atomic regions from SNP 55575 to 56175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:15,627 DEBUG Processing 420/515 atomic regions from SNP 125965 to 126565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,714 DEBUG Processing 396/527 atomic regions from SNP 118577 to 119177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:15,725 DEBUG Processing 187/340 atomic regions from SNP 55875 to 56475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:15,827 DEBUG Processing 421/515 atomic regions from SNP 126265 to 126865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:15,889 DEBUG Processing 188/340 atomic regions from SNP 56175 to 56775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:15,918 DEBUG Processing 397/527 atomic regions from SNP 118877 to 119477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:16,004 DEBUG Processing 422/515 atomic regions from SNP 126565 to 127165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,055 DEBUG Processing 189/340 atomic regions from SNP 56475 to 57075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:16,105 DEBUG Processing 398/527 atomic regions from SNP 119177 to 119777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:16,180 DEBUG Processing 423/515 atomic regions from SNP 126865 to 127465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,216 DEBUG Processing 190/340 atomic regions from SNP 56775 to 57375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:16,292 DEBUG Processing 399/527 atomic regions from SNP 119477 to 120077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:16,381 DEBUG Processing 191/340 atomic regions from SNP 57075 to 57675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:16,384 DEBUG Processing 424/515 atomic regions from SNP 127165 to 127765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,517 DEBUG Processing 400/527 atomic regions from SNP 119777 to 120377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:16,549 DEBUG Processing 192/340 atomic regions from SNP 57375 to 57975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:16,605 DEBUG Processing 425/515 atomic regions from SNP 127465 to 128065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,704 DEBUG Processing 401/527 atomic regions from SNP 120077 to 120677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:16,727 DEBUG Processing 193/340 atomic regions from SNP 57675 to 58275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:16,860 DEBUG Processing 426/515 atomic regions from SNP 127765 to 128365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:16,935 DEBUG Processing 194/340 atomic regions from SNP 57975 to 58575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:16,958 DEBUG Processing 402/527 atomic regions from SNP 120377 to 120977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:17,147 DEBUG Processing 195/340 atomic regions from SNP 58275 to 58875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:17,148 DEBUG Processing 427/515 atomic regions from SNP 128065 to 128665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,234 DEBUG Processing 403/527 atomic regions from SNP 120677 to 121277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:17,388 DEBUG Processing 196/340 atomic regions from SNP 58575 to 59175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:17,462 DEBUG Processing 428/515 atomic regions from SNP 128365 to 128965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,521 DEBUG Processing 404/527 atomic regions from SNP 120977 to 121577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:17,620 DEBUG Processing 197/340 atomic regions from SNP 58875 to 59475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:17,782 DEBUG Processing 429/515 atomic regions from SNP 128665 to 129265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:17,795 DEBUG Processing 405/527 atomic regions from SNP 121277 to 121877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:17,868 DEBUG Processing 198/340 atomic regions from SNP 59175 to 59775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:18,067 DEBUG Processing 430/515 atomic regions from SNP 128965 to 129565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,078 DEBUG Processing 406/527 atomic regions from SNP 121577 to 122177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:18,115 DEBUG Processing 199/340 atomic regions from SNP 59475 to 60075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:18,336 DEBUG Processing 431/515 atomic regions from SNP 129265 to 129865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,343 DEBUG Processing 200/340 atomic regions from SNP 59775 to 60375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:18,354 DEBUG Processing 407/527 atomic regions from SNP 121877 to 122477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:18,565 DEBUG Processing 201/340 atomic regions from SNP 60075 to 60675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:18,601 DEBUG Processing 432/515 atomic regions from SNP 129565 to 130165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,645 DEBUG Processing 408/527 atomic regions from SNP 122177 to 122777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:18,781 DEBUG Processing 202/340 atomic regions from SNP 60375 to 60975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:18,881 DEBUG Processing 433/515 atomic regions from SNP 129865 to 130465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:18,925 DEBUG Processing 409/527 atomic regions from SNP 122477 to 123077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:19,004 DEBUG Processing 203/340 atomic regions from SNP 60675 to 61275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:19,147 DEBUG Processing 410/527 atomic regions from SNP 122777 to 123377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:19,148 DEBUG Processing 434/515 atomic regions from SNP 130165 to 130765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,173 DEBUG Processing 204/340 atomic regions from SNP 60975 to 61575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:19,399 DEBUG Processing 205/340 atomic regions from SNP 61275 to 61875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:19,432 DEBUG Processing 435/515 atomic regions from SNP 130465 to 131065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,453 DEBUG Processing 411/527 atomic regions from SNP 123077 to 123677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:19,570 DEBUG Processing 206/340 atomic regions from SNP 61575 to 62175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:19,627 DEBUG Processing 436/515 atomic regions from SNP 130765 to 131365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,659 DEBUG Processing 412/527 atomic regions from SNP 123377 to 123977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:19,729 DEBUG Processing 207/340 atomic regions from SNP 61875 to 62475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:19,813 DEBUG Processing 437/515 atomic regions from SNP 131065 to 131665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:19,842 DEBUG Processing 413/527 atomic regions from SNP 123677 to 124277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:19,884 DEBUG Processing 208/340 atomic regions from SNP 62175 to 62775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,021 DEBUG Processing 414/527 atomic regions from SNP 123977 to 124577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:20,022 DEBUG Processing 438/515 atomic regions from SNP 131365 to 131965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,038 DEBUG Processing 209/340 atomic regions from SNP 62475 to 63075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,195 DEBUG Processing 210/340 atomic regions from SNP 62775 to 63375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,199 DEBUG Processing 415/527 atomic regions from SNP 124277 to 124877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:20,220 DEBUG Processing 439/515 atomic regions from SNP 131665 to 132265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,354 DEBUG Processing 211/340 atomic regions from SNP 63075 to 63675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,377 DEBUG Processing 416/527 atomic regions from SNP 124577 to 125177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:20,415 DEBUG Processing 440/515 atomic regions from SNP 131965 to 132565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,511 DEBUG Processing 212/340 atomic regions from SNP 63375 to 63975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,558 DEBUG Processing 417/527 atomic regions from SNP 124877 to 125477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:20,602 DEBUG Processing 441/515 atomic regions from SNP 132265 to 132865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,667 DEBUG Processing 213/340 atomic regions from SNP 63675 to 64275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,735 DEBUG Processing 418/527 atomic regions from SNP 125177 to 125777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:20,806 DEBUG Processing 442/515 atomic regions from SNP 132565 to 133165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:20,820 DEBUG Processing 214/340 atomic regions from SNP 63975 to 64575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:20,948 DEBUG Processing 419/527 atomic regions from SNP 125477 to 126077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:21,021 DEBUG Processing 215/340 atomic regions from SNP 64275 to 64875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:21,107 DEBUG Processing 443/515 atomic regions from SNP 132865 to 133465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,207 DEBUG Processing 420/527 atomic regions from SNP 125777 to 126377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:21,249 DEBUG Processing 216/340 atomic regions from SNP 64575 to 65175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:21,388 DEBUG Processing 444/515 atomic regions from SNP 133165 to 133765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,428 DEBUG Processing 217/340 atomic regions from SNP 64875 to 65475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:21,431 DEBUG Processing 421/527 atomic regions from SNP 126077 to 126677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:21,655 DEBUG Processing 218/340 atomic regions from SNP 65175 to 65775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:21,676 DEBUG Processing 445/515 atomic regions from SNP 133465 to 134065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:21,688 DEBUG Processing 422/527 atomic regions from SNP 126377 to 126977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:21,884 DEBUG Processing 219/340 atomic regions from SNP 65475 to 66075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:21,940 DEBUG Processing 423/527 atomic regions from SNP 126677 to 127277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:21,944 DEBUG Processing 446/515 atomic regions from SNP 133765 to 134365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,094 DEBUG Processing 220/340 atomic regions from SNP 65775 to 66375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:22,212 DEBUG Processing 424/527 atomic regions from SNP 126977 to 127577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:22,212 DEBUG Processing 447/515 atomic regions from SNP 134065 to 134665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,263 DEBUG Processing 221/340 atomic regions from SNP 66075 to 66675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:22,399 DEBUG Processing 448/515 atomic regions from SNP 134365 to 134965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,407 DEBUG Processing 425/527 atomic regions from SNP 127277 to 127877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:22,423 DEBUG Processing 222/340 atomic regions from SNP 66375 to 66975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:22,580 DEBUG Processing 449/515 atomic regions from SNP 134665 to 135265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,588 DEBUG Processing 426/527 atomic regions from SNP 127577 to 128177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:22,589 DEBUG Processing 223/340 atomic regions from SNP 66675 to 67275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:22,758 DEBUG Processing 450/515 atomic regions from SNP 134965 to 135565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,766 DEBUG Processing 427/527 atomic regions from SNP 127877 to 128477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:22,768 DEBUG Processing 224/340 atomic regions from SNP 66975 to 67575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:22,936 DEBUG Processing 451/515 atomic regions from SNP 135265 to 135865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:22,945 DEBUG Processing 428/527 atomic regions from SNP 128177 to 128777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:22,959 DEBUG Processing 225/340 atomic regions from SNP 67275 to 67875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:23,186 DEBUG Processing 226/340 atomic regions from SNP 67575 to 68175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:23,196 DEBUG Processing 452/515 atomic regions from SNP 135565 to 136165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,200 DEBUG Processing 429/527 atomic regions from SNP 128477 to 129077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:23,402 DEBUG Processing 227/340 atomic regions from SNP 67875 to 68475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:23,424 DEBUG Processing 453/515 atomic regions from SNP 135865 to 136465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,430 DEBUG Processing 430/527 atomic regions from SNP 128777 to 129377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:23,573 DEBUG Processing 228/340 atomic regions from SNP 68175 to 68775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:23,611 DEBUG Processing 454/515 atomic regions from SNP 136165 to 136765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,633 DEBUG Processing 431/527 atomic regions from SNP 129077 to 129677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:23,792 DEBUG Processing 229/340 atomic regions from SNP 68475 to 69075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:23,879 DEBUG Processing 455/515 atomic regions from SNP 136465 to 137065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:23,899 DEBUG Processing 432/527 atomic regions from SNP 129377 to 129977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:23,989 DEBUG Processing 230/340 atomic regions from SNP 68775 to 69375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:24,132 DEBUG Processing 456/515 atomic regions from SNP 136765 to 137365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:24,155 DEBUG Processing 433/527 atomic regions from SNP 129677 to 130277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:24,184 DEBUG Processing 231/340 atomic regions from SNP 69075 to 69675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:24,392 DEBUG Processing 232/340 atomic regions from SNP 69375 to 69975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:24,433 DEBUG Processing 434/527 atomic regions from SNP 129977 to 130577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:24,436 DEBUG Processing 457/515 atomic regions from SNP 137065 to 137665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:24,587 DEBUG Processing 233/340 atomic regions from SNP 69675 to 70275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:24,707 DEBUG Processing 435/527 atomic regions from SNP 130277 to 130877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:24,731 DEBUG Processing 458/515 atomic regions from SNP 137365 to 137965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:24,815 DEBUG Processing 234/340 atomic regions from SNP 69975 to 70575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:24,936 DEBUG Processing 436/527 atomic regions from SNP 130577 to 131177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:24,967 DEBUG Processing 459/515 atomic regions from SNP 137665 to 138265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,018 DEBUG Processing 235/340 atomic regions from SNP 70275 to 70875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:25,178 DEBUG Processing 437/527 atomic regions from SNP 130877 to 131477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:25,201 DEBUG Processing 460/515 atomic regions from SNP 137965 to 138565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,239 DEBUG Processing 236/340 atomic regions from SNP 70575 to 71175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:25,420 DEBUG Processing 237/340 atomic regions from SNP 70875 to 71475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:25,441 DEBUG Processing 438/527 atomic regions from SNP 131177 to 131777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:25,450 DEBUG Processing 461/515 atomic regions from SNP 138265 to 138865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,632 DEBUG Processing 238/340 atomic regions from SNP 71175 to 71775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:25,689 DEBUG Processing 439/527 atomic regions from SNP 131477 to 132077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:25,693 DEBUG Processing 462/515 atomic regions from SNP 138565 to 139165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,883 DEBUG Processing 239/340 atomic regions from SNP 71475 to 72075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:25,957 DEBUG Processing 463/515 atomic regions from SNP 138865 to 139465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:25,961 DEBUG Processing 440/527 atomic regions from SNP 131777 to 132377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:26,111 DEBUG Processing 240/340 atomic regions from SNP 71775 to 72375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:26,199 DEBUG Processing 464/515 atomic regions from SNP 139165 to 139765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,203 DEBUG Processing 441/527 atomic regions from SNP 132077 to 132677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:26,358 DEBUG Processing 241/340 atomic regions from SNP 72075 to 72675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:26,482 DEBUG Processing 465/515 atomic regions from SNP 139465 to 140065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,506 DEBUG Processing 442/527 atomic regions from SNP 132377 to 132977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:26,567 DEBUG Processing 242/340 atomic regions from SNP 72375 to 72975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:26,729 DEBUG Processing 466/515 atomic regions from SNP 139765 to 140365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,778 DEBUG Processing 243/340 atomic regions from SNP 72675 to 73275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:26,788 DEBUG Processing 443/527 atomic regions from SNP 132677 to 133277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:26,905 DEBUG Processing 467/515 atomic regions from SNP 140065 to 140665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:26,966 DEBUG Processing 244/340 atomic regions from SNP 72975 to 73575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:26,975 DEBUG Processing 444/527 atomic regions from SNP 132977 to 133577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:27,080 DEBUG Processing 468/515 atomic regions from SNP 140365 to 140965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,152 DEBUG Processing 245/340 atomic regions from SNP 73275 to 73875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:27,179 DEBUG Processing 445/527 atomic regions from SNP 133277 to 133877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:27,254 DEBUG Processing 469/515 atomic regions from SNP 140665 to 141265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,331 DEBUG Processing 246/340 atomic regions from SNP 73575 to 74175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:27,375 DEBUG Processing 446/527 atomic regions from SNP 133577 to 134177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:27,427 DEBUG Processing 470/515 atomic regions from SNP 140965 to 141565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,511 DEBUG Processing 247/340 atomic regions from SNP 73875 to 74475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:27,554 DEBUG Processing 447/527 atomic regions from SNP 133877 to 134477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:27,609 DEBUG Processing 471/515 atomic regions from SNP 141265 to 141865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,697 DEBUG Processing 248/340 atomic regions from SNP 74175 to 74775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:27,732 DEBUG Processing 448/527 atomic regions from SNP 134177 to 134777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:27,817 DEBUG Processing 472/515 atomic regions from SNP 141565 to 142165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:27,888 DEBUG Processing 249/340 atomic regions from SNP 74475 to 75075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:27,916 DEBUG Processing 449/527 atomic regions from SNP 134477 to 135077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:28,078 DEBUG Processing 473/515 atomic regions from SNP 141865 to 142465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,100 DEBUG Processing 250/340 atomic regions from SNP 74775 to 75375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:28,133 DEBUG Processing 450/527 atomic regions from SNP 134777 to 135377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:28,329 DEBUG Processing 474/515 atomic regions from SNP 142165 to 142765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,346 DEBUG Processing 251/340 atomic regions from SNP 75075 to 75675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:28,388 DEBUG Processing 451/527 atomic regions from SNP 135077 to 135677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:28,567 DEBUG Processing 475/515 atomic regions from SNP 142465 to 143065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,580 DEBUG Processing 252/340 atomic regions from SNP 75375 to 75975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:28,660 DEBUG Processing 452/527 atomic regions from SNP 135377 to 135977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:28,762 DEBUG Processing 476/515 atomic regions from SNP 142765 to 143365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:28,786 DEBUG Processing 253/340 atomic regions from SNP 75675 to 76275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:28,848 DEBUG Processing 453/527 atomic regions from SNP 135677 to 136277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:28,934 DEBUG Processing 477/515 atomic regions from SNP 143065 to 143665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,004 DEBUG Processing 254/340 atomic regions from SNP 75975 to 76575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:29,064 DEBUG Processing 454/527 atomic regions from SNP 135977 to 136577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:29,139 DEBUG Processing 478/515 atomic regions from SNP 143365 to 143965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,201 DEBUG Processing 255/340 atomic regions from SNP 76275 to 76875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:29,249 DEBUG Processing 455/527 atomic regions from SNP 136277 to 136877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:29,363 DEBUG Processing 479/515 atomic regions from SNP 143665 to 144265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,452 DEBUG Processing 256/340 atomic regions from SNP 76575 to 77175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:29,519 DEBUG Processing 456/527 atomic regions from SNP 136577 to 137177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:29,641 DEBUG Processing 480/515 atomic regions from SNP 143965 to 144565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,702 DEBUG Processing 257/340 atomic regions from SNP 76875 to 77475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:29,788 DEBUG Processing 457/527 atomic regions from SNP 136877 to 137477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:29,899 DEBUG Processing 481/515 atomic regions from SNP 144265 to 144865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:29,935 DEBUG Processing 258/340 atomic regions from SNP 77175 to 77775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:30,046 DEBUG Processing 458/527 atomic regions from SNP 137177 to 137777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:30,156 DEBUG Processing 482/515 atomic regions from SNP 144565 to 145165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,161 DEBUG Processing 259/340 atomic regions from SNP 77475 to 78075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:30,301 DEBUG Processing 459/527 atomic regions from SNP 137477 to 138077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:30,384 DEBUG Processing 260/340 atomic regions from SNP 77775 to 78375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:30,414 DEBUG Processing 483/515 atomic regions from SNP 144865 to 145465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,562 DEBUG Processing 460/527 atomic regions from SNP 137777 to 138377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:30,600 DEBUG Processing 261/340 atomic regions from SNP 78075 to 78675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:30,690 DEBUG Processing 484/515 atomic regions from SNP 145165 to 145765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:30,803 DEBUG Processing 262/340 atomic regions from SNP 78375 to 78975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:30,822 DEBUG Processing 461/527 atomic regions from SNP 138077 to 138677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:30,957 DEBUG Processing 485/515 atomic regions from SNP 145465 to 146065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,014 DEBUG Processing 263/340 atomic regions from SNP 78675 to 79275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:31,080 DEBUG Processing 462/527 atomic regions from SNP 138377 to 138977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:31,171 DEBUG Processing 486/515 atomic regions from SNP 145765 to 146365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,178 DEBUG Processing 264/340 atomic regions from SNP 78975 to 79575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:31,290 DEBUG Processing 463/527 atomic regions from SNP 138677 to 139277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:31,366 DEBUG Processing 265/340 atomic regions from SNP 79275 to 79875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:31,399 DEBUG Processing 487/515 atomic regions from SNP 146065 to 146665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,547 DEBUG Processing 464/527 atomic regions from SNP 138977 to 139577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:31,559 DEBUG Processing 266/340 atomic regions from SNP 79575 to 80175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:31,624 DEBUG Processing 488/515 atomic regions from SNP 146365 to 146965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,752 DEBUG Processing 267/340 atomic regions from SNP 79875 to 80475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:31,775 DEBUG Processing 465/527 atomic regions from SNP 139277 to 139877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:31,848 DEBUG Processing 489/515 atomic regions from SNP 146665 to 147265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:31,953 DEBUG Processing 268/340 atomic regions from SNP 80175 to 80775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:32,057 DEBUG Processing 466/527 atomic regions from SNP 139577 to 140177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:32,111 DEBUG Processing 490/515 atomic regions from SNP 146965 to 147565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:32,163 DEBUG Processing 269/340 atomic regions from SNP 80475 to 81075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:32,349 DEBUG Processing 467/527 atomic regions from SNP 139877 to 140477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:32,374 DEBUG Processing 491/515 atomic regions from SNP 147265 to 147865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:32,380 DEBUG Processing 270/340 atomic regions from SNP 80775 to 81375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:32,594 DEBUG Processing 271/340 atomic regions from SNP 81075 to 81675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:32,611 DEBUG Processing 468/527 atomic regions from SNP 140177 to 140777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:32,627 DEBUG Processing 492/515 atomic regions from SNP 147565 to 148165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:32,807 DEBUG Processing 272/340 atomic regions from SNP 81375 to 81975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:32,867 DEBUG Processing 469/527 atomic regions from SNP 140477 to 141077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:32,880 DEBUG Processing 493/515 atomic regions from SNP 147865 to 148465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,019 DEBUG Processing 273/340 atomic regions from SNP 81675 to 82275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:33,133 DEBUG Processing 470/527 atomic regions from SNP 140777 to 141377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:33,136 DEBUG Processing 494/515 atomic regions from SNP 148165 to 148765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,235 DEBUG Processing 274/340 atomic regions from SNP 81975 to 82575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:33,394 DEBUG Processing 495/515 atomic regions from SNP 148465 to 149065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,417 DEBUG Processing 471/527 atomic regions from SNP 141077 to 141677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:33,442 DEBUG Processing 275/340 atomic regions from SNP 82275 to 82875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:33,626 DEBUG Processing 496/515 atomic regions from SNP 148765 to 149365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,650 DEBUG Processing 276/340 atomic regions from SNP 82575 to 83175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:33,677 DEBUG Processing 472/527 atomic regions from SNP 141377 to 141977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:33,857 DEBUG Processing 277/340 atomic regions from SNP 82875 to 83475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:33,873 DEBUG Processing 497/515 atomic regions from SNP 149065 to 149665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:33,934 DEBUG Processing 473/527 atomic regions from SNP 141677 to 142277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:34,059 DEBUG Processing 278/340 atomic regions from SNP 83175 to 83775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:34,121 DEBUG Processing 498/515 atomic regions from SNP 149365 to 149965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,187 DEBUG Processing 474/527 atomic regions from SNP 141977 to 142577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:34,263 DEBUG Processing 279/340 atomic regions from SNP 83475 to 84075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:34,361 DEBUG Processing 499/515 atomic regions from SNP 149665 to 150265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,446 DEBUG Processing 475/527 atomic regions from SNP 142277 to 142877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:34,472 DEBUG Processing 280/340 atomic regions from SNP 83775 to 84375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:34,607 DEBUG Processing 500/515 atomic regions from SNP 149965 to 150565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,674 DEBUG Processing 281/340 atomic regions from SNP 84075 to 84675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:34,704 DEBUG Processing 476/527 atomic regions from SNP 142577 to 143177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:34,861 DEBUG Processing 501/515 atomic regions from SNP 150265 to 150865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:34,889 DEBUG Processing 282/340 atomic regions from SNP 84375 to 84975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:34,967 DEBUG Processing 477/527 atomic regions from SNP 142877 to 143477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:35,087 DEBUG Processing 283/340 atomic regions from SNP 84675 to 85275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:35,104 DEBUG Processing 502/515 atomic regions from SNP 150565 to 151165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,213 DEBUG Processing 478/527 atomic regions from SNP 143177 to 143777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:35,294 DEBUG Processing 284/340 atomic regions from SNP 84975 to 85575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:35,358 DEBUG Processing 503/515 atomic regions from SNP 150865 to 151465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,494 DEBUG Processing 479/527 atomic regions from SNP 143477 to 144077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:35,498 DEBUG Processing 285/340 atomic regions from SNP 85275 to 85875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:35,605 DEBUG Processing 504/515 atomic regions from SNP 151165 to 151765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,712 DEBUG Processing 286/340 atomic regions from SNP 85575 to 86175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:35,789 DEBUG Processing 480/527 atomic regions from SNP 143777 to 144377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:35,850 DEBUG Processing 505/515 atomic regions from SNP 151465 to 152065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:35,886 DEBUG Processing 287/340 atomic regions from SNP 85875 to 86475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:36,017 DEBUG Processing 481/527 atomic regions from SNP 144077 to 144677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:36,060 DEBUG Processing 288/340 atomic regions from SNP 86175 to 86775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:36,067 DEBUG Processing 506/515 atomic regions from SNP 151765 to 152365 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,200 DEBUG Processing 482/527 atomic regions from SNP 144377 to 144977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:36,218 DEBUG Processing 289/340 atomic regions from SNP 86475 to 87075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:36,238 DEBUG Processing 507/515 atomic regions from SNP 152065 to 152665 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,402 DEBUG Processing 290/340 atomic regions from SNP 86775 to 87375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:36,410 DEBUG Processing 483/527 atomic regions from SNP 144677 to 145277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:36,453 DEBUG Processing 508/515 atomic regions from SNP 152365 to 152965 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,601 DEBUG Processing 291/340 atomic regions from SNP 87075 to 87675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:36,662 DEBUG Processing 484/527 atomic regions from SNP 144977 to 145577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:36,682 DEBUG Processing 509/515 atomic regions from SNP 152665 to 153265 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,771 DEBUG Processing 292/340 atomic regions from SNP 87375 to 87975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:36,849 DEBUG Processing 485/527 atomic regions from SNP 145277 to 145877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:36,856 DEBUG Processing 510/515 atomic regions from SNP 152965 to 153565 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:36,957 DEBUG Processing 293/340 atomic regions from SNP 87675 to 88275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:37,029 DEBUG Processing 511/515 atomic regions from SNP 153265 to 153865 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,051 DEBUG Processing 486/527 atomic regions from SNP 145577 to 146177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:37,124 DEBUG Processing 294/340 atomic regions from SNP 87975 to 88575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:37,219 DEBUG Processing 512/515 atomic regions from SNP 153565 to 154165 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,269 DEBUG Processing 487/527 atomic regions from SNP 145877 to 146477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:37,292 DEBUG Processing 295/340 atomic regions from SNP 88275 to 88875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:37,391 DEBUG Processing 513/515 atomic regions from SNP 153865 to 154465 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,456 DEBUG Processing 488/527 atomic regions from SNP 146177 to 146777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:37,479 DEBUG Processing 296/340 atomic regions from SNP 88575 to 89175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:37,560 DEBUG Processing 514/515 atomic regions from SNP 154165 to 154765 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,636 DEBUG Processing 489/527 atomic regions from SNP 146477 to 147077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:37,651 DEBUG Processing 297/340 atomic regions from SNP 88875 to 89475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:37,731 DEBUG Processing 515/515 atomic regions from SNP 154465 to 155065 for chr18 (subchromosome 1 of 1). 2025-01-31 10:03:37,808 DEBUG Processing 298/340 atomic regions from SNP 89175 to 89775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:37,839 DEBUG Processing 490/527 atomic regions from SNP 146777 to 147377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:37,839 DEBUG Unique SNPs positions in subchromosome 1: 155066 2025-01-31 10:03:37,962 DEBUG Processing 299/340 atomic regions from SNP 89475 to 90075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,040 DEBUG Processing 491/527 atomic regions from SNP 147077 to 147677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:38,112 DEBUG Processing 300/340 atomic regions from SNP 89775 to 90375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,225 DEBUG Processing 492/527 atomic regions from SNP 147377 to 147977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:38,265 DEBUG Processing 301/340 atomic regions from SNP 90075 to 90675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,413 DEBUG Processing 493/527 atomic regions from SNP 147677 to 148277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:38,420 DEBUG Processing 302/340 atomic regions from SNP 90375 to 90975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,571 DEBUG Processing 303/340 atomic regions from SNP 90675 to 91275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,603 DEBUG Processing 494/527 atomic regions from SNP 147977 to 148577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:38,739 DEBUG Processing 304/340 atomic regions from SNP 90975 to 91575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,781 DEBUG Processing 495/527 atomic regions from SNP 148277 to 148877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:38,908 DEBUG Processing 305/340 atomic regions from SNP 91275 to 91875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:38,954 DEBUG Processing 496/527 atomic regions from SNP 148577 to 149177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:39,056 DEBUG Processing 306/340 atomic regions from SNP 91575 to 92175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:39,124 DEBUG Processing 497/527 atomic regions from SNP 148877 to 149477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:39,204 DEBUG Processing 307/340 atomic regions from SNP 91875 to 92475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:39,297 DEBUG Processing 498/527 atomic regions from SNP 149177 to 149777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:39,366 DEBUG Processing 308/340 atomic regions from SNP 92175 to 92775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:39,468 DEBUG Processing 499/527 atomic regions from SNP 149477 to 150077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:39,525 DEBUG Processing 309/340 atomic regions from SNP 92475 to 93075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:39,639 DEBUG Processing 500/527 atomic regions from SNP 149777 to 150377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:39,677 DEBUG Processing 310/340 atomic regions from SNP 92775 to 93375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:39,819 DEBUG Processing 501/527 atomic regions from SNP 150077 to 150677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:39,841 DEBUG Processing 311/340 atomic regions from SNP 93075 to 93675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:39,994 DEBUG Processing 502/527 atomic regions from SNP 150377 to 150977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:40,017 DEBUG Processing 312/340 atomic regions from SNP 93375 to 93975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:40,172 DEBUG Processing 503/527 atomic regions from SNP 150677 to 151277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:40,191 DEBUG Processing 313/340 atomic regions from SNP 93675 to 94275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:40,368 DEBUG Processing 504/527 atomic regions from SNP 150977 to 151577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:40,371 DEBUG Processing 314/340 atomic regions from SNP 93975 to 94575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:40,562 DEBUG Processing 315/340 atomic regions from SNP 94275 to 94875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:40,579 DEBUG Processing 505/527 atomic regions from SNP 151277 to 151877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:40,757 DEBUG Processing 316/340 atomic regions from SNP 94575 to 95175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:40,805 DEBUG Processing 506/527 atomic regions from SNP 151577 to 152177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:40,912 DEBUG Processing 317/340 atomic regions from SNP 94875 to 95475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,038 DEBUG Processing 507/527 atomic regions from SNP 151877 to 152477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:41,123 DEBUG Processing 318/340 atomic regions from SNP 95175 to 95775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,244 DEBUG Processing 508/527 atomic regions from SNP 152177 to 152777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:41,303 DEBUG Processing 319/340 atomic regions from SNP 95475 to 96075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,442 DEBUG Processing 509/527 atomic regions from SNP 152477 to 153077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:41,454 DEBUG Processing 320/340 atomic regions from SNP 95775 to 96375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,606 DEBUG Processing 321/340 atomic regions from SNP 96075 to 96675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,618 DEBUG Processing 510/527 atomic regions from SNP 152777 to 153377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:41,755 DEBUG Processing 322/340 atomic regions from SNP 96375 to 96975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,792 DEBUG Processing 511/527 atomic regions from SNP 153077 to 153677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:41,904 DEBUG Processing 323/340 atomic regions from SNP 96675 to 97275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:41,966 DEBUG Processing 512/527 atomic regions from SNP 153377 to 153977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:42,052 DEBUG Processing 324/340 atomic regions from SNP 96975 to 97575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:42,139 DEBUG Processing 513/527 atomic regions from SNP 153677 to 154277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:42,204 DEBUG Processing 325/340 atomic regions from SNP 97275 to 97875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:42,316 DEBUG Processing 514/527 atomic regions from SNP 153977 to 154577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:42,356 DEBUG Processing 326/340 atomic regions from SNP 97575 to 98175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:42,490 DEBUG Processing 515/527 atomic regions from SNP 154277 to 154877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:42,507 DEBUG Processing 327/340 atomic regions from SNP 97875 to 98475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:42,658 DEBUG Processing 328/340 atomic regions from SNP 98175 to 98775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:42,667 DEBUG Processing 516/527 atomic regions from SNP 154577 to 155177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:42,810 DEBUG Processing 329/340 atomic regions from SNP 98475 to 99075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:42,843 DEBUG Processing 517/527 atomic regions from SNP 154877 to 155477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:42,984 DEBUG Processing 330/340 atomic regions from SNP 98775 to 99375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:43,018 DEBUG Processing 518/527 atomic regions from SNP 155177 to 155777 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:43,155 DEBUG Processing 331/340 atomic regions from SNP 99075 to 99675 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:43,195 DEBUG Processing 519/527 atomic regions from SNP 155477 to 156077 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:43,242 DEBUG Subchromosome time: 142.9749287739396, subchromosome SNPs: 155066 2025-01-31 10:03:43,242 DEBUG Estimated BADs: [1.61, 3.21, 1.61, 0.40, 1.61, 0.54, 3.21, 0.40, 4.82, 1.61, 8.03, 3.21, 0.80, 4.82, 0.54, 1.61, 0.32, 0.80, 6.42, 1.61, 8.03, 1.61, 8.03, 1.61, 8.03, 0.54, 3.21, 0.54, 6.42, 1.61, 0.54] SNP counts: [3204, 3838, 15029, 6601, 4238, 3042, 4176, 9442, 1864, 2843, 4966, 4848, 12162, 1799, 2995, 2392, 2413, 8302, 409, 6550, 2455, 10071, 1025, 5007, 343, 4969, 10373, 1459, 646, 9289, 8316] SNP IDs counts: [3204, 3838, 15029, 6601, 4238, 3042, 4176, 9442, 1864, 2843, 4966, 4848, 12162, 1799, 2995, 2392, 2413, 8302, 409, 6550, 2455, 10071, 1025, 5007, 343, 4969, 10373, 1459, 646, 9289, 8316] Critical gap: 510740bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.92Mbp, 7.09Mbp, 15.59Mbp, 19.64Mbp, 22.03Mbp, 23.80Mbp, 26.07Mbp, 31.58Mbp, 32.57Mbp, 34.22Mbp, 36.80Mbp, 39.49Mbp, 46.40Mbp, 47.37Mbp, 49.12Mbp, 50.47Mbp, 51.92Mbp, 56.55Mbp, 56.77Mbp, 60.47Mbp, 61.75Mbp, 67.20Mbp, 67.74Mbp, 70.47Mbp, 70.66Mbp, 73.53Mbp, 79.17Mbp, 80.04Mbp, 80.37Mbp, 85.48Mbp, 90.70Mbp] 2025-01-31 10:03:43,242 DEBUG chr18 time: 142.97540143877268 s 2025-01-31 10:03:43,306 DEBUG Processing 332/340 atomic regions from SNP 99375 to 99975 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:43,327 DEBUG chr18: Fitting background model for 31 segments 2025-01-31 10:03:43,371 DEBUG Processing 520/527 atomic regions from SNP 155777 to 156377 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:43,456 DEBUG Processing 333/340 atomic regions from SNP 99675 to 100275 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:43,545 DEBUG Processing 521/527 atomic regions from SNP 156077 to 156677 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:43,607 DEBUG Processing 334/340 atomic regions from SNP 99975 to 100575 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:43,720 DEBUG Processing 522/527 atomic regions from SNP 156377 to 156977 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:43,758 DEBUG Processing 335/340 atomic regions from SNP 100275 to 100875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:43,912 DEBUG Processing 523/527 atomic regions from SNP 156677 to 157277 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:43,927 DEBUG Processing 336/340 atomic regions from SNP 100575 to 101175 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:44,129 DEBUG Processing 337/340 atomic regions from SNP 100875 to 101475 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:44,156 DEBUG Processing 524/527 atomic regions from SNP 156977 to 157577 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:44,337 DEBUG Processing 338/340 atomic regions from SNP 101175 to 101775 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:44,422 DEBUG Processing 525/527 atomic regions from SNP 157277 to 157877 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:44,565 DEBUG Processing 339/340 atomic regions from SNP 101475 to 102075 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:44,631 DEBUG Processing 526/527 atomic regions from SNP 157577 to 158177 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:44,726 DEBUG Processing 340/340 atomic regions from SNP 101775 to 102375 for chr19 (subchromosome 1 of 1). 2025-01-31 10:03:44,813 DEBUG Processing 527/527 atomic regions from SNP 157877 to 158477 for chr17 (subchromosome 1 of 1). 2025-01-31 10:03:44,833 DEBUG Unique SNPs positions in subchromosome 1: 102376 2025-01-31 10:03:44,918 DEBUG Unique SNPs positions in subchromosome 1: 158478 2025-01-31 10:03:47,598 DEBUG Subchromosome time: 79.51684239506721, subchromosome SNPs: 102376 2025-01-31 10:03:47,598 DEBUG Estimated BADs: [0.58, 9.34, 0.78, 9.34, 0.47, 7.01, 0.58, 4.67, 0.78, 2.34, 0.47, 2.34, 0.33, 1.17, 2.34, 1.17, 2.34, 0.78, 4.67, 0.47, 2.34, 0.29, 2.34, 4.67, 0.58, 7.01, 2.34, 0.39, 2.34] SNP counts: [201, 7903, 990, 1409, 745, 2109, 1178, 567, 6062, 3304, 1476, 974, 2651, 4195, 3897, 6304, 3300, 3372, 1473, 4433, 6018, 1187, 3067, 2378, 897, 6585, 3004, 6801, 15896] SNP IDs counts: [201, 7903, 990, 1409, 745, 2109, 1178, 567, 6062, 3304, 1476, 974, 2651, 4195, 3897, 6304, 3300, 3372, 1473, 4433, 6018, 1187, 3067, 2378, 897, 6585, 3004, 6801, 15896] Critical gap: 417687bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 3.26Mbp, 7.61Mbp, 8.33Mbp, 9.14Mbp, 9.87Mbp, 10.99Mbp, 11.71Mbp, 12.02Mbp, 15.61Mbp, 17.45Mbp, 18.29Mbp, 18.84Mbp, 20.41Mbp, 22.82Mbp, 24.95Mbp, 28.48Mbp, 30.26Mbp, 32.17Mbp, 32.97Mbp, 35.72Mbp, 39.00Mbp, 39.92Mbp, 41.64Mbp, 42.91Mbp, 43.43Mbp, 46.97Mbp, 48.61Mbp, 52.65Mbp, 61.43Mbp] 2025-01-31 10:03:47,598 DEBUG chr19 time: 79.51725135371089 s 2025-01-31 10:03:47,649 DEBUG chr19: Fitting background model for 29 segments 2025-01-31 10:03:58,047 DEBUG Subchromosome time: 156.96924478933215, subchromosome SNPs: 158478 2025-01-31 10:03:58,047 DEBUG Estimated BADs: [2.42, 0.81, 4.84, 2.42, 0.81, 0.27, 1.21, 9.68, 4.84, 24.19, 2.42, 12.10, 2.42, 0.35, 0.81, 2.42, 7.26, 1.21, 0.48, 2.42, 0.48, 9.68, 0.48, 2.42, 0.81, 4.84, 1.21, 4.84, 2.42, 0.40, 2.42, 0.40, 2.42, 4.84, 0.35] SNP counts: [1292, 2117, 2518, 14937, 3018, 4185, 4230, 11081, 8001, 613, 771, 2565, 1829, 5098, 6618, 2158, 5944, 5410, 2659, 933, 2966, 3247, 8782, 3604, 1183, 2418, 6896, 2767, 7420, 2997, 6302, 2395, 1547, 10207, 9770] SNP IDs counts: [1292, 2117, 2518, 14937, 3018, 4185, 4230, 11081, 8001, 613, 771, 2565, 1829, 5098, 6618, 2158, 5944, 5410, 2659, 933, 2966, 3247, 8782, 3604, 1183, 2418, 6896, 2767, 7420, 2997, 6302, 2395, 1547, 10207, 9770] Critical gap: 529941bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.71Mbp, 4.88Mbp, 6.27Mbp, 15.89Mbp, 17.86Mbp, 20.51Mbp, 23.53Mbp, 29.39Mbp, 33.82Mbp, 34.14Mbp, 34.57Mbp, 36.03Mbp, 37.12Mbp, 40.49Mbp, 44.39Mbp, 45.55Mbp, 48.70Mbp, 51.58Mbp, 53.14Mbp, 53.69Mbp, 55.61Mbp, 57.36Mbp, 62.58Mbp, 64.58Mbp, 65.24Mbp, 66.59Mbp, 70.45Mbp, 71.92Mbp, 75.98Mbp, 77.77Mbp, 81.20Mbp, 82.62Mbp, 83.51Mbp, 88.91Mbp, 94.99Mbp] 2025-01-31 10:03:58,048 DEBUG chr17 time: 156.9696946926415 s 2025-01-31 10:03:58,141 DEBUG chr17: Fitting background model for 35 segments 2025-01-31 10:05:07,035 DEBUG Results of fit_background_model emitted. 2025-01-31 10:05:07,164 INFO Signal to noise fit: SPOT=0.41±0.22 2025-01-31 10:05:07,169 INFO Final SPOT score: 0.41±0.22. Refitted 0 segments. 2025-01-31 10:05:07,238 INFO Estimating per-bp parameters of background model 2025-01-31 10:05:07,245 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:05:07,245 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:05:14,015 DEBUG chr3:3000000-8566501: Successfully fit background model for 4,802,880 bp. Use segment r for 0 bp 2025-01-31 10:05:14,139 DEBUG chr5:3002500-5766751: Successfully fit background model for 2,434,784 bp. Use segment r for 0 bp 2025-01-31 10:05:14,174 DEBUG chr3:8566501-10232251: Successfully fit background model for 1,528,789 bp. Use segment r for 0 bp 2025-01-31 10:05:14,269 DEBUG chr4:3050000-6334251: Successfully fit background model for 2,682,322 bp. Use segment r for 0 bp 2025-01-31 10:05:14,289 DEBUG chr4:6334251-6464251: Successfully fit background model for 126,032 bp. Use segment r for 0 bp 2025-01-31 10:05:14,510 DEBUG chr4:6464251-8640251: Successfully fit background model for 1,910,925 bp. Use segment r for 0 bp 2025-01-31 10:05:14,923 DEBUG chrX:3055000-7314751: Successfully fit background model for 1,771,790 bp. Use segment r for 5,513 bp 2025-01-31 10:05:15,086 DEBUG chr2:3051000-7392251: Successfully fit background model for 4,104,880 bp. Use segment r for 0 bp 2025-01-31 10:05:15,116 DEBUG chr3:10232251-19150251: Successfully fit background model for 7,505,979 bp. Use segment r for 0 bp 2025-01-31 10:05:15,153 DEBUG chrX:7314751-9735251: Successfully fit background model for 1,969,403 bp. Use segment r for 0 bp 2025-01-31 10:05:15,184 DEBUG chr3:19150251-19695251: Successfully fit background model for 509,432 bp. Use segment r for 0 bp 2025-01-31 10:05:15,263 DEBUG chr2:7392251-9236501: Successfully fit background model for 1,618,166 bp. Use segment r for 0 bp 2025-01-31 10:05:15,270 DEBUG chr4:8640251-16194251: Successfully fit background model for 6,814,869 bp. Use segment r for 0 bp 2025-01-31 10:05:15,385 DEBUG chrX:9735251-11995751: Successfully fit background model for 2,098,341 bp. Use segment r for 0 bp 2025-01-31 10:05:15,492 DEBUG chr4:16194251-18523251: Successfully fit background model for 2,001,437 bp. Use segment r for 0 bp 2025-01-31 10:05:15,552 DEBUG chrX:11995751-13723751: Successfully fit background model for 1,622,921 bp. Use segment r for 0 bp 2025-01-31 10:05:15,796 DEBUG chr1:3000500-9540001: Successfully fit background model for 5,696,417 bp. Use segment r for 0 bp 2025-01-31 10:05:15,801 DEBUG chr2:9236501-14311751: Successfully fit background model for 4,667,634 bp. Use segment r for 0 bp 2025-01-31 10:05:15,859 DEBUG chr1:9540001-10021751: Successfully fit background model for 464,559 bp. Use segment r for 0 bp 2025-01-31 10:05:15,914 DEBUG chrX:13723751-17150751: Successfully fit background model for 2,966,501 bp. Use segment r for 0 bp 2025-01-31 10:05:15,928 DEBUG chr4:18523251-23481751: Successfully fit background model for 4,326,623 bp. Use segment r for 0 bp 2025-01-31 10:05:16,140 DEBUG chr1:10021751-13117751: Successfully fit background model for 2,770,720 bp. Use segment r for 0 bp 2025-01-31 10:05:16,140 DEBUG chr2:14311751-18025251: Successfully fit background model for 3,311,783 bp. Use segment r for 0 bp 2025-01-31 10:05:16,149 DEBUG chr3:19695251-28263251: Successfully fit background model for 7,579,332 bp. Use segment r for 0 bp 2025-01-31 10:05:16,188 DEBUG chr1:13117751-13524751: Successfully fit background model for 386,848 bp. Use segment r for 0 bp 2025-01-31 10:05:16,219 DEBUG chr3:28263251-28817251: Successfully fit background model for 535,573 bp. Use segment r for 0 bp 2025-01-31 10:05:16,250 DEBUG chrX:17150751-20616751: Successfully fit background model for 2,943,739 bp. Use segment r for 0 bp 2025-01-31 10:05:16,315 DEBUG chr2:18025251-19920751: Successfully fit background model for 1,766,181 bp. Use segment r for 0 bp 2025-01-31 10:05:16,341 DEBUG chrX:20616751-21491751: Successfully fit background model for 786,650 bp. Use segment r for 0 bp 2025-01-31 10:05:16,400 DEBUG chr3:28817251-30548251: Successfully fit background model for 1,563,965 bp. Use segment r for 0 bp 2025-01-31 10:05:16,653 DEBUG chr1:13524751-18165251: Successfully fit background model for 4,115,989 bp. Use segment r for 0 bp 2025-01-31 10:05:16,740 DEBUG chr5:5766751-20874501: Successfully fit background model for 12,042,640 bp. Use segment r for 2,736 bp 2025-01-31 10:05:16,766 DEBUG chr2:19920751-24918751: Successfully fit background model for 4,377,423 bp. Use segment r for 0 bp 2025-01-31 10:05:16,929 DEBUG chr4:23481751-32560251: Successfully fit background model for 8,181,099 bp. Use segment r for 0 bp 2025-01-31 10:05:16,981 DEBUG chr5:20874501-23383251: Successfully fit background model for 2,289,554 bp. Use segment r for 0 bp 2025-01-31 10:05:17,175 DEBUG chrX:21491751-26917001: Successfully fit background model for 2,816,295 bp. Use segment r for 1,440 bp 2025-01-31 10:05:17,180 DEBUG chr5:23383251-25546001: Successfully fit background model for 2,060,372 bp. Use segment r for 0 bp 2025-01-31 10:05:17,243 DEBUG chr4:32560251-35965001: Successfully fit background model for 3,139,066 bp. Use segment r for 0 bp 2025-01-31 10:05:17,538 DEBUG chr2:24918751-32756251: Successfully fit background model for 7,598,466 bp. Use segment r for 0 bp 2025-01-31 10:05:17,595 DEBUG chr5:25546001-30193751: Successfully fit background model for 4,156,588 bp. Use segment r for 0 bp 2025-01-31 10:05:17,626 DEBUG chr4:35965001-40130251: Successfully fit background model for 3,710,283 bp. Use segment r for 0 bp 2025-01-31 10:05:17,702 DEBUG chr5:30193751-31242751: Successfully fit background model for 966,715 bp. Use segment r for 0 bp 2025-01-31 10:05:17,793 DEBUG chr4:40130251-41857501: Successfully fit background model for 1,566,855 bp. Use segment r for 0 bp 2025-01-31 10:05:17,856 DEBUG chr2:32756251-36272251: Successfully fit background model for 3,434,216 bp. Use segment r for 0 bp 2025-01-31 10:05:17,924 DEBUG chrX:31132500-36549251: Successfully fit background model for 1,105,950 bp. Use segment r for 4,266 bp 2025-01-31 10:05:17,931 DEBUG chr2:36272251-36984251: Successfully fit background model for 582,134 bp. Use segment r for 0 bp 2025-01-31 10:05:18,148 DEBUG chrX:36549251-38871751: Successfully fit background model for 1,688,402 bp. Use segment r for 0 bp 2025-01-31 10:05:18,154 DEBUG chr2:36984251-39381251: Successfully fit background model for 2,242,999 bp. Use segment r for 0 bp 2025-01-31 10:05:18,237 DEBUG chr4:42706000-47167251: Successfully fit background model for 4,208,841 bp. Use segment r for 0 bp 2025-01-31 10:05:18,306 DEBUG chr3:30548251-42163251: Successfully fit background model for 10,609,937 bp. Use segment r for 4,516 bp 2025-01-31 10:05:18,352 DEBUG chrX:38871751-40941251: Successfully fit background model for 1,737,000 bp. Use segment r for 0 bp 2025-01-31 10:05:18,468 DEBUG chr4:47167251-49697251: Successfully fit background model for 2,356,737 bp. Use segment r for 0 bp 2025-01-31 10:05:18,509 DEBUG chrX:40941251-42561751: Successfully fit background model for 1,448,051 bp. Use segment r for 0 bp 2025-01-31 10:05:18,534 DEBUG chr5:31242751-38933751: Successfully fit background model for 7,324,973 bp. Use segment r for 0 bp 2025-01-31 10:05:18,640 DEBUG chr2:39381251-44495251: Successfully fit background model for 4,673,242 bp. Use segment r for 0 bp 2025-01-31 10:05:18,679 DEBUG chr4:49697251-51923251: Successfully fit background model for 1,958,343 bp. Use segment r for 0 bp 2025-01-31 10:05:18,721 DEBUG chr1:18165251-30867751: Successfully fit background model for 11,391,267 bp. Use segment r for 1,769 bp 2025-01-31 10:05:18,739 DEBUG chr2:44495251-45457251: Successfully fit background model for 920,732 bp. Use segment r for 0 bp 2025-01-31 10:05:18,750 DEBUG chr1:30867751-30950751: Successfully fit background model for 76,217 bp. Use segment r for 0 bp 2025-01-31 10:05:18,923 DEBUG chr5:38933751-43204751: Successfully fit background model for 3,784,035 bp. Use segment r for 0 bp 2025-01-31 10:05:18,967 DEBUG chr2:45457251-48037251: Successfully fit background model for 2,340,928 bp. Use segment r for 0 bp 2025-01-31 10:05:19,009 DEBUG chr1:30950751-33446251: Successfully fit background model for 2,180,068 bp. Use segment r for 0 bp 2025-01-31 10:05:19,088 DEBUG chr4:51923251-56170751: Successfully fit background model for 3,925,857 bp. Use segment r for 0 bp 2025-01-31 10:05:19,102 DEBUG chrX:42561751-48027751: Successfully fit background model for 4,715,922 bp. Use segment r for 0 bp 2025-01-31 10:05:19,148 DEBUG chr1:33446251-34896251: Successfully fit background model for 1,380,034 bp. Use segment r for 0 bp 2025-01-31 10:05:19,176 DEBUG chr5:43204751-45881751: Successfully fit background model for 2,473,977 bp. Use segment r for 0 bp 2025-01-31 10:05:19,189 DEBUG chr3:42163251-48382251: Successfully fit background model for 5,506,321 bp. Use segment r for 2,408 bp 2025-01-31 10:05:19,252 DEBUG chr1:34896251-35984751: Successfully fit background model for 997,026 bp. Use segment r for 0 bp 2025-01-31 10:05:19,331 DEBUG chrX:48027751-50549251: Successfully fit background model for 2,172,242 bp. Use segment r for 0 bp 2025-01-31 10:05:19,335 DEBUG chr4:56170751-58886251: Successfully fit background model for 2,569,244 bp. Use segment r for 0 bp 2025-01-31 10:05:19,347 DEBUG chrX:50549251-50639751: Successfully fit background model for 82,897 bp. Use segment r for 0 bp 2025-01-31 10:05:19,349 DEBUG chr1:35984751-36929251: Successfully fit background model for 920,189 bp. Use segment r for 0 bp 2025-01-31 10:05:19,435 DEBUG chr2:48037251-53202251: Successfully fit background model for 4,894,187 bp. Use segment r for 0 bp 2025-01-31 10:05:19,442 DEBUG chr3:48382251-51149251: Successfully fit background model for 2,454,233 bp. Use segment r for 0 bp 2025-01-31 10:05:19,454 DEBUG chr4:58886251-60067501: Successfully fit background model for 1,095,763 bp. Use segment r for 0 bp 2025-01-31 10:05:19,491 DEBUG chr3:51149251-51584251: Successfully fit background model for 422,451 bp. Use segment r for 0 bp 2025-01-31 10:05:19,602 DEBUG chr1:36929251-39476251: Successfully fit background model for 2,459,941 bp. Use segment r for 0 bp 2025-01-31 10:05:19,685 DEBUG chr5:45881751-51303751: Successfully fit background model for 4,958,250 bp. Use segment r for 0 bp 2025-01-31 10:05:19,787 DEBUG chr2:53202251-57110251: Successfully fit background model for 3,348,520 bp. Use segment r for 0 bp 2025-01-31 10:05:19,836 DEBUG chr2:57110251-57488751: Successfully fit background model for 352,220 bp. Use segment r for 0 bp 2025-01-31 10:05:19,922 DEBUG chr2:57488751-58186251: Successfully fit background model for 641,492 bp. Use segment r for 0 bp 2025-01-31 10:05:19,953 DEBUG chr5:51303751-54208251: Successfully fit background model for 2,799,410 bp. Use segment r for 0 bp 2025-01-31 10:05:20,021 DEBUG chr4:60067501-63984751: Successfully fit background model for 2,086,983 bp. Use segment r for 10,467 bp 2025-01-31 10:05:20,125 DEBUG chr1:39476251-44391251: Successfully fit background model for 4,648,813 bp. Use segment r for 0 bp 2025-01-31 10:05:20,304 DEBUG chr3:51584251-59416751: Successfully fit background model for 7,286,085 bp. Use segment r for 0 bp 2025-01-31 10:05:20,311 DEBUG chr2:58186251-62005751: Successfully fit background model for 3,571,828 bp. Use segment r for 0 bp 2025-01-31 10:05:20,722 DEBUG chr3:59416751-63926751: Successfully fit background model for 3,990,024 bp. Use segment r for 0 bp 2025-01-31 10:05:20,737 DEBUG chr3:63926751-63978751: Successfully fit background model for 48,895 bp. Use segment r for 0 bp 2025-01-31 10:05:20,967 DEBUG chr2:62005751-67859251: Successfully fit background model for 5,420,228 bp. Use segment r for 0 bp 2025-01-31 10:05:21,019 DEBUG chr1:44391251-52028751: Successfully fit background model for 6,669,560 bp. Use segment r for 0 bp 2025-01-31 10:05:21,148 DEBUG chr2:67859251-69712251: Successfully fit background model for 1,744,443 bp. Use segment r for 0 bp 2025-01-31 10:05:21,270 DEBUG chr5:54208251-63477751: Successfully fit background model for 8,216,541 bp. Use segment r for 0 bp 2025-01-31 10:05:21,356 DEBUG chr3:63978751-70191501: Successfully fit background model for 5,537,581 bp. Use segment r for 0 bp 2025-01-31 10:05:21,577 DEBUG chr2:69712251-73610751: Successfully fit background model for 3,789,456 bp. Use segment r for 0 bp 2025-01-31 10:05:21,762 DEBUG chr1:52028751-58387751: Successfully fit background model for 5,866,186 bp. Use segment r for 0 bp 2025-01-31 10:05:21,774 DEBUG chr5:63477751-68427751: Successfully fit background model for 4,685,799 bp. Use segment r for 0 bp 2025-01-31 10:05:21,781 DEBUG chr3:70191501-75040251: Successfully fit background model for 4,296,225 bp. Use segment r for 0 bp 2025-01-31 10:05:21,916 DEBUG chr1:58387751-59882751: Successfully fit background model for 1,407,041 bp. Use segment r for 0 bp 2025-01-31 10:05:22,093 DEBUG chr5:68427751-71810251: Successfully fit background model for 2,980,857 bp. Use segment r for 0 bp 2025-01-31 10:05:22,168 DEBUG chr1:59882751-62688751: Successfully fit background model for 2,623,866 bp. Use segment r for 0 bp 2025-01-31 10:05:22,216 DEBUG chr3:75040251-79514251: Successfully fit background model for 4,013,584 bp. Use segment r for 0 bp 2025-01-31 10:05:22,231 DEBUG chr1:62688751-63183751: Successfully fit background model for 479,424 bp. Use segment r for 0 bp 2025-01-31 10:05:22,298 DEBUG chr2:73610751-80804751: Successfully fit background model for 6,841,448 bp. Use segment r for 0 bp 2025-01-31 10:05:22,304 DEBUG chr3:79514251-80373251: Successfully fit background model for 783,321 bp. Use segment r for 0 bp 2025-01-31 10:05:22,330 DEBUG chr1:63183751-64096751: Successfully fit background model for 859,650 bp. Use segment r for 0 bp 2025-01-31 10:05:22,360 DEBUG chr4:63984751-81963751: Successfully fit background model for 15,914,124 bp. Use segment r for 0 bp 2025-01-31 10:05:22,442 DEBUG chr1:64096751-65189251: Successfully fit background model for 1,012,294 bp. Use segment r for 0 bp 2025-01-31 10:05:22,534 DEBUG chr2:80804751-83226251: Successfully fit background model for 2,086,232 bp. Use segment r for 0 bp 2025-01-31 10:05:22,596 DEBUG chr4:81963751-84320251: Successfully fit background model for 2,183,008 bp. Use segment r for 0 bp 2025-01-31 10:05:22,637 DEBUG chr3:80373251-83983251: Successfully fit background model for 3,330,123 bp. Use segment r for 0 bp 2025-01-31 10:05:22,689 DEBUG chr2:83226251-84648251: Successfully fit background model for 1,163,655 bp. Use segment r for 0 bp 2025-01-31 10:05:22,697 DEBUG chr5:71810251-77857251: Successfully fit background model for 5,716,894 bp. Use segment r for 0 bp 2025-01-31 10:05:22,753 DEBUG chr2:84648251-85259751: Successfully fit background model for 582,038 bp. Use segment r for 0 bp 2025-01-31 10:05:22,810 DEBUG chr4:84320251-86553251: Successfully fit background model for 2,109,465 bp. Use segment r for 0 bp 2025-01-31 10:05:22,975 DEBUG chr3:83983251-87724251: Successfully fit background model for 3,563,370 bp. Use segment r for 0 bp 2025-01-31 10:05:23,084 DEBUG chr4:86553251-89606751: Successfully fit background model for 2,729,387 bp. Use segment r for 0 bp 2025-01-31 10:05:23,112 DEBUG chr1:65189251-72202251: Successfully fit background model for 6,466,423 bp. Use segment r for 0 bp 2025-01-31 10:05:23,220 DEBUG chr5:77857251-83670251: Successfully fit background model for 5,200,782 bp. Use segment r for 0 bp 2025-01-31 10:05:23,236 DEBUG chr3:87724251-90441751: Successfully fit background model for 2,581,756 bp. Use segment r for 0 bp 2025-01-31 10:05:23,285 DEBUG chr2:85259751-90469751: Successfully fit background model for 4,358,231 bp. Use segment r for 0 bp 2025-01-31 10:05:23,305 DEBUG chr1:72202251-74235751: Successfully fit background model for 1,928,651 bp. Use segment r for 0 bp 2025-01-31 10:05:23,347 DEBUG chr3:90441751-91575501: Successfully fit background model for 941,399 bp. Use segment r for 0 bp 2025-01-31 10:05:23,378 DEBUG chr4:89606751-92876251: Successfully fit background model for 2,862,528 bp. Use segment r for 0 bp 2025-01-31 10:05:23,439 DEBUG chr1:74235751-75560251: Successfully fit background model for 1,227,037 bp. Use segment r for 0 bp 2025-01-31 10:05:23,608 DEBUG chr4:92876251-95492751: Successfully fit background model for 2,361,652 bp. Use segment r for 0 bp 2025-01-31 10:05:23,667 DEBUG chr2:90469751-94668751: Successfully fit background model for 4,080,008 bp. Use segment r for 0 bp 2025-01-31 10:05:23,777 DEBUG chr4:95492751-97269251: Successfully fit background model for 1,602,801 bp. Use segment r for 0 bp 2025-01-31 10:05:23,785 DEBUG chr5:83670251-88544751: Successfully fit background model for 4,308,488 bp. Use segment r for 0 bp 2025-01-31 10:05:23,793 DEBUG chr3:91575501-94309251: Successfully fit background model for 2,006,194 bp. Use segment r for 10,450 bp 2025-01-31 10:05:23,836 DEBUG chrX:50639751-72906751: Successfully fit background model for 18,184,250 bp. Use segment r for 82 bp 2025-01-31 10:05:23,847 DEBUG chr5:88544751-89076751: Successfully fit background model for 489,585 bp. Use segment r for 0 bp 2025-01-31 10:05:24,025 DEBUG chrX:72906751-74343251: Successfully fit background model for 1,203,352 bp. Use segment r for 0 bp 2025-01-31 10:05:24,027 DEBUG chr3:94309251-96820251: Successfully fit background model for 2,307,639 bp. Use segment r for 0 bp 2025-01-31 10:05:24,122 DEBUG chr1:75560251-82786751: Successfully fit background model for 6,674,275 bp. Use segment r for 0 bp 2025-01-31 10:05:24,142 DEBUG chr1:82786751-82855751: Successfully fit background model for 67,871 bp. Use segment r for 0 bp 2025-01-31 10:05:24,166 DEBUG chr5:89076751-92073251: Successfully fit background model for 2,732,717 bp. Use segment r for 0 bp 2025-01-31 10:05:24,294 DEBUG chr2:94668751-101190751: Successfully fit background model for 5,442,524 bp. Use segment r for 0 bp 2025-01-31 10:05:24,327 DEBUG chrX:74343251-77424751: Successfully fit background model for 2,365,917 bp. Use segment r for 0 bp 2025-01-31 10:05:24,351 DEBUG chr1:82855751-84837751: Successfully fit background model for 1,804,495 bp. Use segment r for 0 bp 2025-01-31 10:05:24,358 DEBUG chr3:96820251-100356751: Successfully fit background model for 3,114,629 bp. Use segment r for 0 bp 2025-01-31 10:05:24,491 DEBUG chr1:84837751-86305751: Successfully fit background model for 931,382 bp. Use segment r for 0 bp 2025-01-31 10:05:24,517 DEBUG chr2:101190751-103477751: Successfully fit background model for 2,205,723 bp. Use segment r for 0 bp 2025-01-31 10:05:24,519 DEBUG chr1:86305751-86534251: Successfully fit background model for 219,998 bp. Use segment r for 0 bp 2025-01-31 10:05:24,572 DEBUG chr2:103477751-103926751: Successfully fit background model for 429,101 bp. Use segment r for 0 bp 2025-01-31 10:05:24,828 DEBUG chr4:97269251-106558251: Successfully fit background model for 8,729,190 bp. Use segment r for 0 bp 2025-01-31 10:05:24,961 DEBUG chr2:103926751-107539001: Successfully fit background model for 3,411,275 bp. Use segment r for 0 bp 2025-01-31 10:05:24,975 DEBUG chr1:86534251-91295251: Successfully fit background model for 4,548,726 bp. Use segment r for 0 bp 2025-01-31 10:05:24,982 DEBUG chr5:92073251-97527251: Successfully fit background model for 3,048,549 bp. Use segment r for 5,017 bp 2025-01-31 10:05:25,119 DEBUG chr4:106558251-109707251: Successfully fit background model for 3,004,568 bp. Use segment r for 0 bp 2025-01-31 10:05:25,213 DEBUG chr5:97527251-99975751: Successfully fit background model for 2,314,157 bp. Use segment r for 0 bp 2025-01-31 10:05:25,246 DEBUG chr1:91295251-94298751: Successfully fit background model for 2,746,333 bp. Use segment r for 0 bp 2025-01-31 10:05:25,320 DEBUG chr4:109707251-111905751: Successfully fit background model for 1,973,168 bp. Use segment r for 0 bp 2025-01-31 10:05:25,434 DEBUG chr3:100356751-109600251: Successfully fit background model for 8,749,859 bp. Use segment r for 0 bp 2025-01-31 10:05:25,453 DEBUG chr2:107539001-112237751: Successfully fit background model for 4,128,932 bp. Use segment r for 0 bp 2025-01-31 10:05:25,483 DEBUG chr1:94298751-96984751: Successfully fit background model for 2,379,158 bp. Use segment r for 0 bp 2025-01-31 10:05:25,518 DEBUG chr2:112237751-112806751: Successfully fit background model for 526,540 bp. Use segment r for 0 bp 2025-01-31 10:05:25,585 DEBUG chr5:99975751-103653251: Successfully fit background model for 3,454,433 bp. Use segment r for 0 bp 2025-01-31 10:05:25,593 DEBUG chr4:111905751-113996751: Successfully fit background model for 1,808,713 bp. Use segment r for 14,269 bp 2025-01-31 10:05:25,605 DEBUG chr1:96984751-98200751: Successfully fit background model for 1,086,407 bp. Use segment r for 0 bp 2025-01-31 10:05:25,613 DEBUG chr5:103653251-103833251: Successfully fit background model for 178,195 bp. Use segment r for 0 bp 2025-01-31 10:05:25,687 DEBUG chr4:113996751-114986251: Successfully fit background model for 909,706 bp. Use segment r for 0 bp 2025-01-31 10:05:25,708 DEBUG chr4:114986251-115104251: Successfully fit background model for 116,335 bp. Use segment r for 0 bp 2025-01-31 10:05:25,772 DEBUG chr4:115104251-115776751: Successfully fit background model for 505,026 bp. Use segment r for 0 bp 2025-01-31 10:05:25,990 DEBUG chr3:109600251-115223251: Successfully fit background model for 4,761,754 bp. Use segment r for 0 bp 2025-01-31 10:05:26,148 DEBUG chr2:112806751-118482251: Successfully fit background model for 5,333,905 bp. Use segment r for 0 bp 2025-01-31 10:05:26,158 DEBUG chr5:103833251-108775751: Successfully fit background model for 4,529,339 bp. Use segment r for 0 bp 2025-01-31 10:05:26,177 DEBUG chr3:115223251-117205501: Successfully fit background model for 1,850,144 bp. Use segment r for 0 bp 2025-01-31 10:05:26,292 DEBUG chr5:108775751-110092751: Successfully fit background model for 1,055,563 bp. Use segment r for 0 bp 2025-01-31 10:05:26,310 DEBUG chr1:98200751-104426251: Successfully fit background model for 5,422,403 bp. Use segment r for 0 bp 2025-01-31 10:05:26,411 DEBUG chr4:115776751-121327751: Successfully fit background model for 5,274,403 bp. Use segment r for 0 bp 2025-01-31 10:05:26,414 DEBUG chrX:77424751-92003251: Successfully fit background model for 12,407,151 bp. Use segment r for 0 bp 2025-01-31 10:05:26,446 DEBUG chr1:104426251-105810751: Successfully fit background model for 1,272,088 bp. Use segment r for 0 bp 2025-01-31 10:05:26,452 DEBUG chrX:92003251-92083751: Successfully fit background model for 56,427 bp. Use segment r for 0 bp 2025-01-31 10:05:26,535 DEBUG chr3:117205501-121145751: Successfully fit background model for 3,643,565 bp. Use segment r for 0 bp 2025-01-31 10:05:26,563 DEBUG chr4:121327751-122872251: Successfully fit background model for 726,673 bp. Use segment r for 0 bp 2025-01-31 10:05:26,568 DEBUG chr1:105810751-106960251: Successfully fit background model for 1,079,438 bp. Use segment r for 0 bp 2025-01-31 10:05:26,580 DEBUG chr2:118482251-122859751: Successfully fit background model for 4,178,571 bp. Use segment r for 0 bp 2025-01-31 10:05:26,620 DEBUG chrX:92083751-93721251: Successfully fit background model for 1,417,564 bp. Use segment r for 0 bp 2025-01-31 10:05:26,696 DEBUG chr5:110092751-113722251: Successfully fit background model for 3,533,671 bp. Use segment r for 0 bp 2025-01-31 10:05:26,713 DEBUG chr2:122859751-124101251: Successfully fit background model for 1,111,349 bp. Use segment r for 0 bp 2025-01-31 10:05:26,725 DEBUG chrX:93721251-94802251: Successfully fit background model for 956,407 bp. Use segment r for 0 bp 2025-01-31 10:05:26,761 DEBUG chr3:121145751-123701751: Successfully fit background model for 2,473,804 bp. Use segment r for 0 bp 2025-01-31 10:05:26,895 DEBUG chr5:113722251-115818751: Successfully fit background model for 2,039,436 bp. Use segment r for 0 bp 2025-01-31 10:05:26,969 DEBUG chr3:123701751-126081251: Successfully fit background model for 2,157,336 bp. Use segment r for 0 bp 2025-01-31 10:05:27,014 DEBUG chr2:124101251-126995751: Successfully fit background model for 2,724,119 bp. Use segment r for 0 bp 2025-01-31 10:05:27,168 DEBUG chr5:115818751-118480251: Successfully fit background model for 2,598,289 bp. Use segment r for 0 bp 2025-01-31 10:05:27,187 DEBUG chrX:94802251-98906251: Successfully fit background model for 3,388,061 bp. Use segment r for 0 bp 2025-01-31 10:05:27,318 DEBUG chr5:118480251-120087251: Successfully fit background model for 1,582,679 bp. Use segment r for 0 bp 2025-01-31 10:05:27,419 DEBUG chr2:126995751-131029251: Successfully fit background model for 3,881,284 bp. Use segment r for 0 bp 2025-01-31 10:05:27,453 DEBUG chr2:131029251-131265751: Successfully fit background model for 229,146 bp. Use segment r for 0 bp 2025-01-31 10:05:27,545 DEBUG chr3:126081251-132213751: Successfully fit background model for 5,715,448 bp. Use segment r for 0 bp 2025-01-31 10:05:27,806 DEBUG chr4:122872251-131682501: Successfully fit background model for 8,410,180 bp. Use segment r for 0 bp 2025-01-31 10:05:27,849 DEBUG chr3:132213751-135394251: Successfully fit background model for 2,868,291 bp. Use segment r for 0 bp 2025-01-31 10:05:27,906 DEBUG chr5:120087251-125343251: Successfully fit background model for 5,034,816 bp. Use segment r for 0 bp 2025-01-31 10:05:27,916 DEBUG chr3:135394251-135975751: Successfully fit background model for 551,869 bp. Use segment r for 0 bp 2025-01-31 10:05:27,994 DEBUG chrX:98906251-106122751: Successfully fit background model for 6,505,294 bp. Use segment r for 0 bp 2025-01-31 10:05:28,185 DEBUG chr2:131265751-137142751: Successfully fit background model for 5,514,756 bp. Use segment r for 0 bp 2025-01-31 10:05:28,240 DEBUG chr4:131682501-136239251: Successfully fit background model for 4,436,794 bp. Use segment r for 0 bp 2025-01-31 10:05:28,270 DEBUG chr3:135975751-139172251: Successfully fit background model for 3,004,170 bp. Use segment r for 0 bp 2025-01-31 10:05:28,312 DEBUG chr5:125343251-129715501: Successfully fit background model for 4,181,204 bp. Use segment r for 0 bp 2025-01-31 10:05:28,365 DEBUG chr5:129715501-130134251: Successfully fit background model for 358,544 bp. Use segment r for 0 bp 2025-01-31 10:05:28,412 DEBUG chr2:137142751-139393501: Successfully fit background model for 2,072,124 bp. Use segment r for 0 bp 2025-01-31 10:05:28,430 DEBUG chr1:106960251-118307751: Successfully fit background model for 9,885,858 bp. Use segment r for 0 bp 2025-01-31 10:05:28,613 DEBUG chr1:118307751-120139751: Successfully fit background model for 1,780,664 bp. Use segment r for 0 bp 2025-01-31 10:05:28,774 DEBUG chr4:136239251-141726751: Successfully fit background model for 5,373,157 bp. Use segment r for 0 bp 2025-01-31 10:05:28,842 DEBUG chr5:130134251-134136751: Successfully fit background model for 3,837,972 bp. Use segment r for 0 bp 2025-01-31 10:05:28,847 DEBUG chr2:139393501-143832251: Successfully fit background model for 4,117,739 bp. Use segment r for 0 bp 2025-01-31 10:05:28,854 DEBUG chr1:120139751-122457251: Successfully fit background model for 2,167,765 bp. Use segment r for 0 bp 2025-01-31 10:05:28,950 DEBUG chr4:141726751-143493251: Successfully fit background model for 1,698,926 bp. Use segment r for 0 bp 2025-01-31 10:05:28,953 DEBUG chr3:139172251-143800251: Successfully fit background model for 4,306,401 bp. Use segment r for 1,216 bp 2025-01-31 10:05:28,972 DEBUG chr2:143832251-144909251: Successfully fit background model for 1,036,161 bp. Use segment r for 0 bp 2025-01-31 10:05:29,022 DEBUG chrX:106122751-113385251: Successfully fit background model for 6,057,254 bp. Use segment r for 0 bp 2025-01-31 10:05:29,027 DEBUG chr1:122457251-124365251: Successfully fit background model for 1,753,397 bp. Use segment r for 0 bp 2025-01-31 10:05:29,082 DEBUG chr4:143493251-144888251: Successfully fit background model for 1,007,472 bp. Use segment r for 0 bp 2025-01-31 10:05:29,245 DEBUG chr3:143800251-146955751: Successfully fit background model for 2,968,901 bp. Use segment r for 0 bp 2025-01-31 10:05:29,541 DEBUG chr4:144888251-147847251: Successfully fit background model for 1,183,305 bp. Use segment r for 1,372 bp 2025-01-31 10:05:29,591 DEBUG chr2:144909251-150903751: Successfully fit background model for 5,505,871 bp. Use segment r for 0 bp 2025-01-31 10:05:29,702 DEBUG chr1:124365251-130713751: Successfully fit background model for 5,903,300 bp. Use segment r for 0 bp 2025-01-31 10:05:29,707 DEBUG chr3:146955751-151768001: Successfully fit background model for 4,542,875 bp. Use segment r for 0 bp 2025-01-31 10:05:29,995 DEBUG chr3:151768001-154897001: Successfully fit background model for 2,974,977 bp. Use segment r for 0 bp 2025-01-31 10:05:30,071 DEBUG chr5:134136751-143965751: Successfully fit background model for 9,290,139 bp. Use segment r for 0 bp 2025-01-31 10:05:30,236 DEBUG chr3:154897001-157271251: Successfully fit background model for 2,197,626 bp. Use segment r for 0 bp 2025-01-31 10:05:30,236 DEBUG chr1:130713751-136412251: Successfully fit background model for 5,544,166 bp. Use segment r for 0 bp 2025-01-31 10:05:30,315 DEBUG chr3:157271251-158050251: Successfully fit background model for 717,626 bp. Use segment r for 0 bp 2025-01-31 10:05:30,446 DEBUG chr2:150903751-158539751: Successfully fit background model for 7,066,604 bp. Use segment r for 0 bp 2025-01-31 10:05:30,522 DEBUG chr3:158050251-160039680: Successfully fit background model for 1,609,709 bp. Use segment r for 0 bp 2025-01-31 10:05:30,553 DEBUG chr1:136412251-139529501: Successfully fit background model for 2,923,550 bp. Use segment r for 0 bp 2025-01-31 10:05:30,563 DEBUG chr4:147847251-156508116: Successfully fit background model for 8,242,110 bp. Use segment r for 0 bp 2025-01-31 10:05:30,864 DEBUG chrX:113385251-124247501: Successfully fit background model for 8,493,013 bp. Use segment r for 15,084 bp 2025-01-31 10:05:30,871 DEBUG chr2:158539751-163252751: Successfully fit background model for 4,504,713 bp. Use segment r for 0 bp 2025-01-31 10:05:30,897 DEBUG chr5:143965751-151834684: Successfully fit background model for 7,180,283 bp. Use segment r for 0 bp 2025-01-31 10:05:30,959 DEBUG chr1:139529501-143701751: Successfully fit background model for 3,544,827 bp. Use segment r for 0 bp 2025-01-31 10:05:31,031 DEBUG chr1:143701751-144407251: Successfully fit background model for 612,425 bp. Use segment r for 0 bp 2025-01-31 10:05:31,345 DEBUG chr2:163252751-168039251: Successfully fit background model for 4,613,305 bp. Use segment r for 0 bp 2025-01-31 10:05:31,606 DEBUG chrX:126011000-134058751: Successfully fit background model for 6,936,598 bp. Use segment r for 0 bp 2025-01-31 10:05:31,720 DEBUG chr2:168039251-172248251: Successfully fit background model for 4,089,625 bp. Use segment r for 0 bp 2025-01-31 10:05:31,891 DEBUG chrX:134058751-136973751: Successfully fit background model for 2,347,643 bp. Use segment r for 0 bp 2025-01-31 10:05:31,990 DEBUG chr2:172248251-175179501: Successfully fit background model for 2,707,661 bp. Use segment r for 0 bp 2025-01-31 10:05:32,020 DEBUG chr1:144407251-150373251: Successfully fit background model for 5,245,274 bp. Use segment r for 21 bp 2025-01-31 10:05:32,445 DEBUG chr2:176700000-179813751: Successfully fit background model for 1,923,922 bp. Use segment r for 89 bp 2025-01-31 10:05:32,576 DEBUG chrX:136973751-142673251: Successfully fit background model for 5,117,184 bp. Use segment r for 0 bp 2025-01-31 10:05:32,687 DEBUG chr2:179813751-182113224: Successfully fit background model for 2,108,729 bp. Use segment r for 0 bp 2025-01-31 10:05:33,918 DEBUG chrX:142673251-150434251: Successfully fit background model for 4,887,546 bp. Use segment r for 1,003 bp 2025-01-31 10:05:34,095 DEBUG chrX:150434251-152143751: Successfully fit background model for 1,521,094 bp. Use segment r for 0 bp 2025-01-31 10:05:34,571 DEBUG chr1:150373251-167215751: Successfully fit background model for 15,853,321 bp. Use segment r for 0 bp 2025-01-31 10:05:34,622 DEBUG chr1:167215751-167395251: Successfully fit background model for 176,368 bp. Use segment r for 0 bp 2025-01-31 10:05:35,043 DEBUG chr1:167395251-170834751: Successfully fit background model for 3,242,610 bp. Use segment r for 0 bp 2025-01-31 10:05:35,107 DEBUG chr1:170834751-171411001: Successfully fit background model for 536,822 bp. Use segment r for 0 bp 2025-01-31 10:05:35,268 DEBUG chr1:171411001-172873751: Successfully fit background model for 1,364,615 bp. Use segment r for 0 bp 2025-01-31 10:05:35,323 DEBUG chrX:152143751-159251751: Successfully fit background model for 6,078,154 bp. Use segment r for 471 bp 2025-01-31 10:05:35,659 DEBUG chr1:172873751-176810751: Successfully fit background model for 3,551,808 bp. Use segment r for 0 bp 2025-01-31 10:05:35,810 DEBUG chr1:176810751-178299251: Successfully fit background model for 1,321,371 bp. Use segment r for 0 bp 2025-01-31 10:05:35,837 DEBUG chr1:178299251-178384251: Successfully fit background model for 82,469 bp. Use segment r for 0 bp 2025-01-31 10:05:35,966 DEBUG chr1:178384251-179469751: Successfully fit background model for 1,059,365 bp. Use segment r for 0 bp 2025-01-31 10:05:36,254 DEBUG chr1:179469751-182045001: Successfully fit background model for 2,467,987 bp. Use segment r for 0 bp 2025-01-31 10:05:36,595 DEBUG chr1:182045001-185420751: Successfully fit background model for 3,125,744 bp. Use segment r for 0 bp 2025-01-31 10:05:36,675 DEBUG chrX:159251751-169966751: Successfully fit background model for 9,808,937 bp. Use segment r for 0 bp 2025-01-31 10:05:36,809 DEBUG chrX:169966751-171031299: Successfully fit background model for 17,046 bp. Use segment r for 0 bp 2025-01-31 10:05:37,272 DEBUG chr1:185420751-190732751: Successfully fit background model for 5,114,770 bp. Use segment r for 0 bp 2025-01-31 10:05:37,400 DEBUG chr1:190732751-191927751: Successfully fit background model for 1,158,954 bp. Use segment r for 0 bp 2025-01-31 10:05:37,791 DEBUG chr1:191927751-195471971: Successfully fit background model for 3,183,437 bp. Use segment r for 0 bp 2025-01-31 10:07:02,631 DEBUG chr6:3050000-4544251: Successfully fit background model for 1,215,197 bp. Use segment r for 0 bp 2025-01-31 10:07:02,942 DEBUG chr6:4544251-7669251: Successfully fit background model for 2,848,189 bp. Use segment r for 0 bp 2025-01-31 10:07:03,074 DEBUG chr6:7669251-9095751: Successfully fit background model for 1,310,950 bp. Use segment r for 0 bp 2025-01-31 10:07:03,255 DEBUG chr6:9095751-11134501: Successfully fit background model for 1,741,205 bp. Use segment r for 0 bp 2025-01-31 10:07:03,949 DEBUG chr6:11134501-17628751: Successfully fit background model for 5,733,611 bp. Use segment r for 0 bp 2025-01-31 10:07:04,080 DEBUG chr6:17628751-18941751: Successfully fit background model for 1,203,116 bp. Use segment r for 0 bp 2025-01-31 10:07:04,872 DEBUG chr7:3004000-3594751: Successfully fit background model for 444,045 bp. Use segment r for 0 bp 2025-01-31 10:07:05,130 DEBUG chr7:3594751-5129251: Successfully fit background model for 1,230,855 bp. Use segment r for 792 bp 2025-01-31 10:07:05,194 DEBUG chr7:5129251-5740751: Successfully fit background model for 441,916 bp. Use segment r for 0 bp 2025-01-31 10:07:05,345 DEBUG chr7:5740751-7306501: Successfully fit background model for 1,316,246 bp. Use segment r for 0 bp 2025-01-31 10:07:05,568 DEBUG chr6:18941751-28214251: Successfully fit background model for 8,245,031 bp. Use segment r for 0 bp 2025-01-31 10:07:05,779 DEBUG chr6:28214251-30359251: Successfully fit background model for 2,089,701 bp. Use segment r for 0 bp 2025-01-31 10:07:06,220 DEBUG chr7:7306501-12308251: Successfully fit background model for 1,699,276 bp. Use segment r for 6,681 bp 2025-01-31 10:07:06,293 DEBUG chr7:12308251-12921251: Successfully fit background model for 483,787 bp. Use segment r for 0 bp 2025-01-31 10:07:06,331 DEBUG chr7:12921251-13064751: Successfully fit background model for 137,173 bp. Use segment r for 0 bp 2025-01-31 10:07:06,495 DEBUG chr6:30359251-35953251: Successfully fit background model for 5,248,006 bp. Use segment r for 0 bp 2025-01-31 10:07:06,558 DEBUG chr6:35953251-36507501: Successfully fit background model for 495,090 bp. Use segment r for 0 bp 2025-01-31 10:07:06,720 DEBUG chr6:36507501-38292751: Successfully fit background model for 1,707,004 bp. Use segment r for 0 bp 2025-01-31 10:07:06,791 DEBUG chr7:13064751-15912251: Successfully fit background model for 1,751,423 bp. Use segment r for 10,366 bp 2025-01-31 10:07:06,846 DEBUG chr6:38292751-39406751: Successfully fit background model for 1,093,379 bp. Use segment r for 0 bp 2025-01-31 10:07:06,909 DEBUG chr7:15912251-17098751: Successfully fit background model for 1,150,884 bp. Use segment r for 0 bp 2025-01-31 10:07:07,087 DEBUG chr7:17098751-18357751: Successfully fit background model for 834,095 bp. Use segment r for 6,621 bp 2025-01-31 10:07:07,164 DEBUG chr7:18357751-18997751: Successfully fit background model for 524,173 bp. Use segment r for 0 bp 2025-01-31 10:07:07,215 DEBUG chr7:18997751-19503751: Successfully fit background model for 496,684 bp. Use segment r for 0 bp 2025-01-31 10:07:07,271 DEBUG chr7:19503751-20066501: Successfully fit background model for 524,618 bp. Use segment r for 0 bp 2025-01-31 10:07:07,319 DEBUG chr6:39406751-43947251: Successfully fit background model for 4,073,602 bp. Use segment r for 0 bp 2025-01-31 10:07:07,494 DEBUG chr7:22778500-24253751: Successfully fit background model for 794,128 bp. Use segment r for 9,157 bp 2025-01-31 10:07:07,599 DEBUG chr6:43947251-47187251: Successfully fit background model for 2,883,848 bp. Use segment r for 0 bp 2025-01-31 10:07:07,653 DEBUG chr7:24253751-25947501: Successfully fit background model for 1,590,543 bp. Use segment r for 0 bp 2025-01-31 10:07:07,767 DEBUG chr7:25947501-27128251: Successfully fit background model for 919,262 bp. Use segment r for 0 bp 2025-01-31 10:07:07,788 DEBUG chr6:47187251-49205751: Successfully fit background model for 1,763,067 bp. Use segment r for 0 bp 2025-01-31 10:07:08,190 DEBUG chr7:27128251-31178751: Successfully fit background model for 3,817,568 bp. Use segment r for 0 bp 2025-01-31 10:07:08,558 DEBUG chr7:31178751-33787501: Successfully fit background model for 1,020,845 bp. Use segment r for 3,881 bp 2025-01-31 10:07:08,719 DEBUG chr6:49205751-56691251: Successfully fit background model for 7,182,927 bp. Use segment r for 0 bp 2025-01-31 10:07:08,756 DEBUG chr6:56691251-56926751: Successfully fit background model for 224,539 bp. Use segment r for 0 bp 2025-01-31 10:07:08,759 DEBUG chr7:33787501-35817251: Successfully fit background model for 1,917,038 bp. Use segment r for 0 bp 2025-01-31 10:07:08,969 DEBUG chr7:35817251-38058251: Successfully fit background model for 2,192,064 bp. Use segment r for 0 bp 2025-01-31 10:07:08,998 DEBUG chr7:38058251-38278251: Successfully fit background model for 215,849 bp. Use segment r for 0 bp 2025-01-31 10:07:09,267 DEBUG chr10:3101500-14708251: Successfully fit background model for 10,559,963 bp. Use segment r for 0 bp 2025-01-31 10:07:09,501 DEBUG chr10:14708251-16947251: Successfully fit background model for 1,960,018 bp. Use segment r for 0 bp 2025-01-31 10:07:09,765 DEBUG chr7:38278251-42923251: Successfully fit background model for 3,240,608 bp. Use segment r for 255 bp 2025-01-31 10:07:09,996 DEBUG chr7:42923251-44460251: Successfully fit background model for 1,361,923 bp. Use segment r for 3 bp 2025-01-31 10:07:10,141 DEBUG chr7:44460251-45682251: Successfully fit background model for 1,198,648 bp. Use segment r for 0 bp 2025-01-31 10:07:10,286 DEBUG chr7:45682251-47151751: Successfully fit background model for 1,439,734 bp. Use segment r for 0 bp 2025-01-31 10:07:10,411 DEBUG chr7:47151751-48388251: Successfully fit background model for 986,506 bp. Use segment r for 0 bp 2025-01-31 10:07:10,576 DEBUG chr7:48388251-50041751: Successfully fit background model for 1,564,304 bp. Use segment r for 0 bp 2025-01-31 10:07:10,770 DEBUG chr6:56926751-66955251: Successfully fit background model for 8,828,419 bp. Use segment r for 550 bp 2025-01-31 10:07:10,789 DEBUG chr7:50041751-51552251: Successfully fit background model for 1,279,372 bp. Use segment r for 201 bp 2025-01-31 10:07:10,824 DEBUG chr10:16947251-28278751: Successfully fit background model for 10,406,250 bp. Use segment r for 0 bp 2025-01-31 10:07:10,841 DEBUG chr7:51552251-52050751: Successfully fit background model for 470,088 bp. Use segment r for 0 bp 2025-01-31 10:07:10,870 DEBUG chr6:66955251-67906751: Successfully fit background model for 841,177 bp. Use segment r for 0 bp 2025-01-31 10:07:11,147 DEBUG chr6:67906751-70725751: Successfully fit background model for 2,210,938 bp. Use segment r for 0 bp 2025-01-31 10:07:11,178 DEBUG chr7:52050751-55426751: Successfully fit background model for 2,973,775 bp. Use segment r for 0 bp 2025-01-31 10:07:11,299 DEBUG chr7:55426751-56698751: Successfully fit background model for 1,099,339 bp. Use segment r for 0 bp 2025-01-31 10:07:11,316 DEBUG chr6:70725751-72526751: Successfully fit background model for 1,738,370 bp. Use segment r for 0 bp 2025-01-31 10:07:11,453 DEBUG chr6:72526751-74047251: Successfully fit background model for 1,397,270 bp. Use segment r for 0 bp 2025-01-31 10:07:12,094 DEBUG chr10:28278751-38540751: Successfully fit background model for 9,268,302 bp. Use segment r for 0 bp 2025-01-31 10:07:12,262 DEBUG chr10:38540751-40104751: Successfully fit background model for 1,443,863 bp. Use segment r for 0 bp 2025-01-31 10:07:12,285 DEBUG chr7:56698751-63502751: Successfully fit background model for 5,612,389 bp. Use segment r for 1,309 bp 2025-01-31 10:07:12,306 DEBUG chr10:40104751-40351251: Successfully fit background model for 231,036 bp. Use segment r for 0 bp 2025-01-31 10:07:12,393 DEBUG chr7:63502751-64510251: Successfully fit background model for 921,270 bp. Use segment r for 0 bp 2025-01-31 10:07:12,449 DEBUG chr6:74047251-81040251: Successfully fit background model for 6,312,377 bp. Use segment r for 71 bp 2025-01-31 10:07:12,633 DEBUG chr6:81040251-82996251: Successfully fit background model for 1,779,159 bp. Use segment r for 0 bp 2025-01-31 10:07:12,656 DEBUG chr7:64510251-67187251: Successfully fit background model for 2,547,110 bp. Use segment r for 0 bp 2025-01-31 10:07:12,699 DEBUG chr6:82996251-83631251: Successfully fit background model for 620,698 bp. Use segment r for 0 bp 2025-01-31 10:07:12,774 DEBUG chr7:67187251-68406001: Successfully fit background model for 1,179,340 bp. Use segment r for 0 bp 2025-01-31 10:07:12,867 DEBUG chr6:83631251-85117501: Successfully fit background model for 1,421,357 bp. Use segment r for 0 bp 2025-01-31 10:07:12,944 DEBUG chr10:40351251-46777001: Successfully fit background model for 6,078,752 bp. Use segment r for 0 bp 2025-01-31 10:07:13,211 DEBUG chr7:68406001-72789251: Successfully fit background model for 4,120,192 bp. Use segment r for 0 bp 2025-01-31 10:07:13,256 DEBUG chr10:46777001-50092751: Successfully fit background model for 2,899,331 bp. Use segment r for 0 bp 2025-01-31 10:07:13,540 DEBUG chr7:72789251-75976501: Successfully fit background model for 2,958,066 bp. Use segment r for 0 bp 2025-01-31 10:07:13,738 DEBUG chr7:75976501-78117751: Successfully fit background model for 1,928,136 bp. Use segment r for 0 bp 2025-01-31 10:07:13,769 DEBUG chr6:85117501-91939251: Successfully fit background model for 6,413,839 bp. Use segment r for 0 bp 2025-01-31 10:07:13,849 DEBUG chr7:78117751-79224251: Successfully fit background model for 1,074,345 bp. Use segment r for 0 bp 2025-01-31 10:07:14,015 DEBUG chr7:79224251-80986251: Successfully fit background model for 1,716,792 bp. Use segment r for 0 bp 2025-01-31 10:07:14,210 DEBUG chr10:50092751-58224001: Successfully fit background model for 6,932,505 bp. Use segment r for 0 bp 2025-01-31 10:07:14,442 DEBUG chr7:80986251-84822751: Successfully fit background model for 3,621,929 bp. Use segment r for 0 bp 2025-01-31 10:07:14,765 DEBUG chr6:91939251-101531751: Successfully fit background model for 9,168,317 bp. Use segment r for 0 bp 2025-01-31 10:07:14,779 DEBUG chr10:58224001-64146251: Successfully fit background model for 5,663,019 bp. Use segment r for 0 bp 2025-01-31 10:07:14,792 DEBUG chr7:84822751-88558501: Successfully fit background model for 3,314,074 bp. Use segment r for 0 bp 2025-01-31 10:07:14,936 DEBUG chr8:3070000-4680751: Successfully fit background model for 1,414,788 bp. Use segment r for 0 bp 2025-01-31 10:07:14,993 DEBUG chr7:88558501-90488251: Successfully fit background model for 1,757,816 bp. Use segment r for 0 bp 2025-01-31 10:07:15,090 DEBUG chr10:64146251-66126751: Successfully fit background model for 1,702,775 bp. Use segment r for 91,622 bp 2025-01-31 10:07:15,226 DEBUG chr8:4680751-7554251: Successfully fit background model for 2,519,244 bp. Use segment r for 0 bp 2025-01-31 10:07:15,232 DEBUG chr7:90488251-92341751: Successfully fit background model for 1,727,374 bp. Use segment r for 0 bp 2025-01-31 10:07:15,306 DEBUG chr7:92341751-93024251: Successfully fit background model for 626,813 bp. Use segment r for 0 bp 2025-01-31 10:07:15,423 DEBUG chr8:7554251-9690751: Successfully fit background model for 2,015,552 bp. Use segment r for 0 bp 2025-01-31 10:07:15,599 DEBUG chr7:93024251-95815251: Successfully fit background model for 2,493,886 bp. Use segment r for 0 bp 2025-01-31 10:07:15,635 DEBUG chr6:101531751-107603251: Successfully fit background model for 5,482,949 bp. Use segment r for 1,486 bp 2025-01-31 10:07:15,789 DEBUG chr6:107603251-108967251: Successfully fit background model for 1,235,048 bp. Use segment r for 0 bp 2025-01-31 10:07:15,820 DEBUG chr7:95815251-98051751: Successfully fit background model for 2,114,975 bp. Use segment r for 0 bp 2025-01-31 10:07:15,860 DEBUG chr10:66126751-71924751: Successfully fit background model for 5,442,835 bp. Use segment r for 0 bp 2025-01-31 10:07:15,997 DEBUG chr6:108967251-111216751: Successfully fit background model for 2,017,964 bp. Use segment r for 0 bp 2025-01-31 10:07:16,054 DEBUG chr8:9690751-14932751: Successfully fit background model for 5,066,860 bp. Use segment r for 0 bp 2025-01-31 10:07:16,110 DEBUG chr10:71924751-74384251: Successfully fit background model for 2,236,497 bp. Use segment r for 0 bp 2025-01-31 10:07:16,175 DEBUG chr6:111216751-112840251: Successfully fit background model for 1,478,711 bp. Use segment r for 0 bp 2025-01-31 10:07:16,235 DEBUG chr10:74384251-75479251: Successfully fit background model for 1,017,332 bp. Use segment r for 0 bp 2025-01-31 10:07:16,261 DEBUG chr6:112840251-113714251: Successfully fit background model for 857,159 bp. Use segment r for 0 bp 2025-01-31 10:07:16,428 DEBUG chr7:98051751-103078251: Successfully fit background model for 4,851,201 bp. Use segment r for 0 bp 2025-01-31 10:07:16,486 DEBUG chr8:14932751-18009751: Successfully fit background model for 2,812,175 bp. Use segment r for 7,906 bp 2025-01-31 10:07:16,581 DEBUG chr10:75479251-78284251: Successfully fit background model for 2,710,577 bp. Use segment r for 0 bp 2025-01-31 10:07:16,627 DEBUG chr7:103078251-105048751: Successfully fit background model for 1,610,819 bp. Use segment r for 0 bp 2025-01-31 10:07:16,719 DEBUG chr10:78284251-79609251: Successfully fit background model for 1,124,079 bp. Use segment r for 0 bp 2025-01-31 10:07:16,740 DEBUG chr7:105048751-105812251: Successfully fit background model for 709,585 bp. Use segment r for 0 bp 2025-01-31 10:07:16,890 DEBUG chr6:113714251-119217251: Successfully fit background model for 5,091,998 bp. Use segment r for 0 bp 2025-01-31 10:07:16,921 DEBUG chr10:79609251-81650751: Successfully fit background model for 2,006,463 bp. Use segment r for 0 bp 2025-01-31 10:07:17,233 DEBUG chr6:119217251-122834751: Successfully fit background model for 3,356,579 bp. Use segment r for 0 bp 2025-01-31 10:07:17,262 DEBUG chr7:105812251-109089751: Successfully fit background model for 2,453,636 bp. Use segment r for 1,608 bp 2025-01-31 10:07:17,383 DEBUG chr6:122834751-124363751: Successfully fit background model for 1,068,327 bp. Use segment r for 0 bp 2025-01-31 10:07:17,435 DEBUG chr7:109089751-110899251: Successfully fit background model for 1,752,285 bp. Use segment r for 0 bp 2025-01-31 10:07:17,508 DEBUG chr6:124363751-125256251: Successfully fit background model for 836,935 bp. Use segment r for 0 bp 2025-01-31 10:07:17,864 DEBUG chr8:18009751-25553751: Successfully fit background model for 5,465,693 bp. Use segment r for 48,340 bp 2025-01-31 10:07:18,058 DEBUG chr6:125256251-129627251: Successfully fit background model for 4,152,804 bp. Use segment r for 0 bp 2025-01-31 10:07:18,064 DEBUG chr8:25553751-27550251: Successfully fit background model for 1,896,101 bp. Use segment r for 0 bp 2025-01-31 10:07:18,331 DEBUG chr8:27550251-30510251: Successfully fit background model for 2,606,401 bp. Use segment r for 0 bp 2025-01-31 10:07:18,414 DEBUG chr6:129627251-133462251: Successfully fit background model for 3,087,968 bp. Use segment r for 0 bp 2025-01-31 10:07:18,538 DEBUG chr6:133462251-134562751: Successfully fit background model for 968,323 bp. Use segment r for 0 bp 2025-01-31 10:07:18,568 DEBUG chr10:81650751-91080751: Successfully fit background model for 8,458,940 bp. Use segment r for 0 bp 2025-01-31 10:07:18,605 DEBUG chr10:91080751-91211751: Successfully fit background model for 127,518 bp. Use segment r for 0 bp 2025-01-31 10:07:18,614 DEBUG chr6:134562751-135192751: Successfully fit background model for 614,309 bp. Use segment r for 0 bp 2025-01-31 10:07:18,659 DEBUG chr8:30510251-33591251: Successfully fit background model for 2,847,618 bp. Use segment r for 0 bp 2025-01-31 10:07:18,727 DEBUG chr10:91211751-92312251: Successfully fit background model for 1,052,285 bp. Use segment r for 0 bp 2025-01-31 10:07:18,741 DEBUG chr6:135192751-136518251: Successfully fit background model for 1,284,658 bp. Use segment r for 0 bp 2025-01-31 10:07:18,780 DEBUG chr6:136518251-136863751: Successfully fit background model for 329,837 bp. Use segment r for 0 bp 2025-01-31 10:07:18,938 DEBUG chr8:33591251-36680251: Successfully fit background model for 2,941,584 bp. Use segment r for 0 bp 2025-01-31 10:07:19,001 DEBUG chr7:110899251-120825751: Successfully fit background model for 9,476,432 bp. Use segment r for 0 bp 2025-01-31 10:07:19,239 DEBUG chr8:36680251-39987251: Successfully fit background model for 2,972,097 bp. Use segment r for 0 bp 2025-01-31 10:07:19,276 DEBUG chr10:92312251-96733751: Successfully fit background model for 4,262,131 bp. Use segment r for 0 bp 2025-01-31 10:07:19,279 DEBUG chr7:120825751-123629751: Successfully fit background model for 2,708,253 bp. Use segment r for 0 bp 2025-01-31 10:07:19,392 DEBUG chr8:39987251-41578251: Successfully fit background model for 1,413,283 bp. Use segment r for 0 bp 2025-01-31 10:07:19,421 DEBUG chr6:136863751-142748251: Successfully fit background model for 5,459,152 bp. Use segment r for 0 bp 2025-01-31 10:07:19,440 DEBUG chr10:96733751-98374751: Successfully fit background model for 1,510,811 bp. Use segment r for 0 bp 2025-01-31 10:07:19,458 DEBUG chr7:123629751-125391251: Successfully fit background model for 1,633,919 bp. Use segment r for 0 bp 2025-01-31 10:07:19,544 DEBUG chr7:125391251-126244751: Successfully fit background model for 830,672 bp. Use segment r for 0 bp 2025-01-31 10:07:19,546 DEBUG chr10:98374751-99211001: Successfully fit background model for 782,240 bp. Use segment r for 0 bp 2025-01-31 10:07:19,687 DEBUG chr8:41578251-44389751: Successfully fit background model for 2,452,592 bp. Use segment r for 0 bp 2025-01-31 10:07:19,749 DEBUG chr7:126244751-127968751: Successfully fit background model for 1,668,592 bp. Use segment r for 0 bp 2025-01-31 10:07:19,862 DEBUG chr8:44389751-46139751: Successfully fit background model for 1,646,270 bp. Use segment r for 0 bp 2025-01-31 10:07:20,017 DEBUG chr8:46139751-47723751: Successfully fit background model for 1,505,571 bp. Use segment r for 0 bp 2025-01-31 10:07:20,027 DEBUG chr7:127968751-130668751: Successfully fit background model for 2,563,828 bp. Use segment r for 0 bp 2025-01-31 10:07:20,131 DEBUG chr6:142748251-149736546: Successfully fit background model for 6,436,926 bp. Use segment r for 0 bp 2025-01-31 10:07:20,147 DEBUG chr8:47723751-48940251: Successfully fit background model for 1,186,651 bp. Use segment r for 0 bp 2025-01-31 10:07:20,316 DEBUG chr7:130668751-133552501: Successfully fit background model for 2,783,428 bp. Use segment r for 0 bp 2025-01-31 10:07:20,522 DEBUG chr14:3006500-5131001: Successfully fit background model for 72,318 bp. Use segment r for 2,453 bp 2025-01-31 10:07:20,963 DEBUG chr8:48940251-56027001: Successfully fit background model for 6,142,226 bp. Use segment r for 0 bp 2025-01-31 10:07:21,115 DEBUG chr8:56027001-57486251: Successfully fit background model for 1,280,981 bp. Use segment r for 0 bp 2025-01-31 10:07:21,209 DEBUG chr8:57486251-57805251: Successfully fit background model for 303,124 bp. Use segment r for 0 bp 2025-01-31 10:07:21,211 DEBUG chr7:133552501-140803751: Successfully fit background model for 6,901,730 bp. Use segment r for 0 bp 2025-01-31 10:07:21,333 DEBUG chr7:140803751-141865751: Successfully fit background model for 995,162 bp. Use segment r for 0 bp 2025-01-31 10:07:21,531 DEBUG chr8:57805251-60858251: Successfully fit background model for 2,654,830 bp. Use segment r for 0 bp 2025-01-31 10:07:21,557 DEBUG chr8:60858251-61021751: Successfully fit background model for 153,781 bp. Use segment r for 0 bp 2025-01-31 10:07:21,666 DEBUG chr8:61021751-61945501: Successfully fit background model for 887,160 bp. Use segment r for 0 bp 2025-01-31 10:07:21,682 DEBUG chr7:141865751-145441459: Successfully fit background model for 3,355,296 bp. Use segment r for 0 bp 2025-01-31 10:07:21,906 DEBUG chr8:61945501-64175251: Successfully fit background model for 1,997,806 bp. Use segment r for 0 bp 2025-01-31 10:07:22,014 DEBUG chr10:99211001-107745251: Successfully fit background model for 7,669,169 bp. Use segment r for 791 bp 2025-01-31 10:07:23,101 DEBUG chr8:64175251-69747251: Successfully fit background model for 4,900,941 bp. Use segment r for 1,882 bp 2025-01-31 10:07:23,115 DEBUG chr10:107745251-115240251: Successfully fit background model for 6,988,965 bp. Use segment r for 0 bp 2025-01-31 10:07:23,236 DEBUG chr8:69747251-70936751: Successfully fit background model for 1,165,272 bp. Use segment r for 0 bp 2025-01-31 10:07:23,477 DEBUG chr8:70936751-72847251: Successfully fit background model for 1,599,928 bp. Use segment r for 0 bp 2025-01-31 10:07:23,808 DEBUG chr8:72847251-75027751: Successfully fit background model for 1,869,233 bp. Use segment r for 16,710 bp 2025-01-31 10:07:23,855 DEBUG chr8:75027751-75451751: Successfully fit background model for 379,238 bp. Use segment r for 0 bp 2025-01-31 10:07:23,979 DEBUG chr8:75451751-76368251: Successfully fit background model for 796,456 bp. Use segment r for 0 bp 2025-01-31 10:07:24,127 DEBUG chr10:115240251-123951251: Successfully fit background model for 8,175,389 bp. Use segment r for 0 bp 2025-01-31 10:07:24,438 DEBUG chr10:123951251-126891751: Successfully fit background model for 2,736,489 bp. Use segment r for 0 bp 2025-01-31 10:07:24,492 DEBUG chr8:76368251-80737751: Successfully fit background model for 4,105,479 bp. Use segment r for 0 bp 2025-01-31 10:07:24,544 DEBUG chr8:80737751-81151751: Successfully fit background model for 391,975 bp. Use segment r for 0 bp 2025-01-31 10:07:24,697 DEBUG chr8:81151751-82356251: Successfully fit background model for 1,116,581 bp. Use segment r for 0 bp 2025-01-31 10:07:24,718 DEBUG chr10:126891751-129106251: Successfully fit background model for 2,132,533 bp. Use segment r for 0 bp 2025-01-31 10:07:24,774 DEBUG chr14:5841000-19693751: Successfully fit background model for 10,940,850 bp. Use segment r for 860 bp 2025-01-31 10:07:24,820 DEBUG chr8:82356251-83565251: Successfully fit background model for 1,083,557 bp. Use segment r for 0 bp 2025-01-31 10:07:24,885 DEBUG chr10:129106251-130694993: Successfully fit background model for 1,225,159 bp. Use segment r for 0 bp 2025-01-31 10:07:24,979 DEBUG chr8:83565251-85100751: Successfully fit background model for 1,507,355 bp. Use segment r for 0 bp 2025-01-31 10:07:25,012 DEBUG chr14:19693751-21862251: Successfully fit background model for 2,098,718 bp. Use segment r for 0 bp 2025-01-31 10:07:26,168 DEBUG chr14:21862251-29693751: Successfully fit background model for 7,067,614 bp. Use segment r for 0 bp 2025-01-31 10:07:26,392 DEBUG chr14:29693751-31951751: Successfully fit background model for 2,190,448 bp. Use segment r for 0 bp 2025-01-31 10:07:26,584 DEBUG chr8:85100751-93887251: Successfully fit background model for 8,389,800 bp. Use segment r for 0 bp 2025-01-31 10:07:26,627 DEBUG chr14:31951751-34501251: Successfully fit background model for 2,462,682 bp. Use segment r for 0 bp 2025-01-31 10:07:26,665 DEBUG chr14:34501251-34675251: Successfully fit background model for 169,635 bp. Use segment r for 0 bp 2025-01-31 10:07:26,798 DEBUG chr8:93887251-96046251: Successfully fit background model for 2,076,817 bp. Use segment r for 0 bp 2025-01-31 10:07:26,901 DEBUG chr14:34675251-37165501: Successfully fit background model for 2,282,819 bp. Use segment r for 0 bp 2025-01-31 10:07:27,211 DEBUG chr14:37165501-40438251: Successfully fit background model for 2,931,334 bp. Use segment r for 0 bp 2025-01-31 10:07:27,286 DEBUG chr14:40438251-41194251: Successfully fit background model for 677,279 bp. Use segment r for 0 bp 2025-01-31 10:07:27,491 DEBUG chr8:96046251-103015501: Successfully fit background model for 6,360,383 bp. Use segment r for 0 bp 2025-01-31 10:07:27,640 DEBUG chr8:103015501-104533751: Successfully fit background model for 1,448,971 bp. Use segment r for 0 bp 2025-01-31 10:07:27,901 DEBUG chr8:104533751-107379751: Successfully fit background model for 2,666,079 bp. Use segment r for 0 bp 2025-01-31 10:07:27,987 DEBUG chr14:41194251-45278751: Successfully fit background model for 1,225,342 bp. Use segment r for 10,405 bp 2025-01-31 10:07:28,108 DEBUG chr8:107379751-109534251: Successfully fit background model for 2,088,762 bp. Use segment r for 0 bp 2025-01-31 10:07:28,407 DEBUG chr8:109534251-112723751: Successfully fit background model for 3,088,961 bp. Use segment r for 0 bp 2025-01-31 10:07:28,408 DEBUG chr14:45278751-49636251: Successfully fit background model for 4,146,853 bp. Use segment r for 0 bp 2025-01-31 10:07:28,528 DEBUG chr14:49636251-50784751: Successfully fit background model for 962,688 bp. Use segment r for 0 bp 2025-01-31 10:07:28,582 DEBUG chr14:50784751-51311251: Successfully fit background model for 479,601 bp. Use segment r for 0 bp 2025-01-31 10:07:28,671 DEBUG chr14:51311251-51983251: Successfully fit background model for 517,347 bp. Use segment r for 0 bp 2025-01-31 10:07:28,709 DEBUG chr14:51983251-52344251: Successfully fit background model for 351,767 bp. Use segment r for 0 bp 2025-01-31 10:07:28,932 DEBUG chr14:52344251-54360751: Successfully fit background model for 1,208,359 bp. Use segment r for 0 bp 2025-01-31 10:07:29,001 DEBUG chr8:112723751-116865751: Successfully fit background model for 3,788,482 bp. Use segment r for 211,064 bp 2025-01-31 10:07:29,052 DEBUG chr14:54360751-55592251: Successfully fit background model for 1,177,988 bp. Use segment r for 0 bp 2025-01-31 10:07:29,232 DEBUG chr8:116865751-119338751: Successfully fit background model for 2,400,743 bp. Use segment r for 0 bp 2025-01-31 10:07:29,824 DEBUG chr8:119338751-124294251: Successfully fit background model for 4,737,002 bp. Use segment r for 0 bp 2025-01-31 10:07:30,057 DEBUG chr8:124294251-126829751: Successfully fit background model for 2,460,811 bp. Use segment r for 0 bp 2025-01-31 10:07:30,332 DEBUG chr8:126829751-129401213: Successfully fit background model for 2,278,981 bp. Use segment r for 0 bp 2025-01-31 10:07:31,090 DEBUG chr14:55592251-68054251: Successfully fit background model for 11,857,600 bp. Use segment r for 0 bp 2025-01-31 10:07:31,180 DEBUG chr14:68054251-68724251: Successfully fit background model for 612,519 bp. Use segment r for 0 bp 2025-01-31 10:07:31,423 DEBUG chr14:68724251-71108251: Successfully fit background model for 1,874,272 bp. Use segment r for 0 bp 2025-01-31 10:07:31,898 DEBUG chr14:71108251-75748751: Successfully fit background model for 4,286,371 bp. Use segment r for 0 bp 2025-01-31 10:07:32,303 DEBUG chr14:75748751-79896251: Successfully fit background model for 3,950,670 bp. Use segment r for 0 bp 2025-01-31 10:07:33,086 DEBUG chr14:79896251-86309251: Successfully fit background model for 5,747,143 bp. Use segment r for 0 bp 2025-01-31 10:07:33,222 DEBUG chr14:86309251-87627251: Successfully fit background model for 1,227,385 bp. Use segment r for 0 bp 2025-01-31 10:07:34,904 DEBUG chr14:87627251-98641751: Successfully fit background model for 10,006,485 bp. Use segment r for 0 bp 2025-01-31 10:07:34,999 DEBUG chr14:98641751-99450751: Successfully fit background model for 776,946 bp. Use segment r for 0 bp 2025-01-31 10:07:35,349 DEBUG chr14:99450751-102661751: Successfully fit background model for 2,968,705 bp. Use segment r for 0 bp 2025-01-31 10:07:35,602 DEBUG chr14:102661751-105415251: Successfully fit background model for 2,536,657 bp. Use segment r for 0 bp 2025-01-31 10:07:36,003 DEBUG chr9:3002500-13296251: Successfully fit background model for 9,011,884 bp. Use segment r for 0 bp 2025-01-31 10:07:36,376 DEBUG chr9:13296251-16894751: Successfully fit background model for 3,316,361 bp. Use segment r for 0 bp 2025-01-31 10:07:36,719 DEBUG chr9:16894751-20634751: Successfully fit background model for 3,219,865 bp. Use segment r for 0 bp 2025-01-31 10:07:36,902 DEBUG chr9:20634751-22447751: Successfully fit background model for 1,746,179 bp. Use segment r for 0 bp 2025-01-31 10:07:37,052 DEBUG chr14:105415251-114997751: Successfully fit background model for 8,588,143 bp. Use segment r for 0 bp 2025-01-31 10:07:37,079 DEBUG chr14:114997751-115059751: Successfully fit background model for 61,576 bp. Use segment r for 0 bp 2025-01-31 10:07:37,099 DEBUG chr9:22447751-24518751: Successfully fit background model for 1,901,952 bp. Use segment r for 0 bp 2025-01-31 10:07:37,277 DEBUG chr14:115059751-116516751: Successfully fit background model for 1,328,523 bp. Use segment r for 0 bp 2025-01-31 10:07:37,776 DEBUG chr14:116516751-121240251: Successfully fit background model for 4,432,282 bp. Use segment r for 0 bp 2025-01-31 10:07:37,822 DEBUG chr9:24518751-31027251: Successfully fit background model for 6,137,721 bp. Use segment r for 0 bp 2025-01-31 10:07:38,011 DEBUG chr9:31027251-32905751: Successfully fit background model for 1,805,790 bp. Use segment r for 0 bp 2025-01-31 10:07:38,029 DEBUG chr14:121240251-123870751: Successfully fit background model for 2,402,561 bp. Use segment r for 0 bp 2025-01-31 10:07:38,151 DEBUG chr14:123870751-124902244: Successfully fit background model for 772,133 bp. Use segment r for 0 bp 2025-01-31 10:07:38,308 DEBUG chr9:32905751-34982751: Successfully fit background model for 1,953,861 bp. Use segment r for 0 bp 2025-01-31 10:07:38,473 DEBUG chr9:34982751-35617251: Successfully fit background model for 593,290 bp. Use segment r for 0 bp 2025-01-31 10:07:38,978 DEBUG chr9:35617251-37676251: Successfully fit background model for 1,817,919 bp. Use segment r for 0 bp 2025-01-31 10:07:39,198 DEBUG chr9:37676251-39995251: Successfully fit background model for 2,070,326 bp. Use segment r for 0 bp 2025-01-31 10:07:39,277 DEBUG chr9:39995251-40755251: Successfully fit background model for 712,923 bp. Use segment r for 0 bp 2025-01-31 10:07:39,287 DEBUG chr9:40755251-40812251: Successfully fit background model for 53,850 bp. Use segment r for 0 bp 2025-01-31 10:07:39,538 DEBUG chr9:40812251-43098751: Successfully fit background model for 2,240,333 bp. Use segment r for 0 bp 2025-01-31 10:07:39,808 DEBUG chr9:43098751-45904751: Successfully fit background model for 2,752,979 bp. Use segment r for 0 bp 2025-01-31 10:07:42,572 DEBUG chr9:45904751-56501751: Successfully fit background model for 10,073,431 bp. Use segment r for 0 bp 2025-01-31 10:07:42,892 DEBUG chr9:56501751-59752251: Successfully fit background model for 3,162,643 bp. Use segment r for 0 bp 2025-01-31 10:07:43,050 DEBUG chr9:59752251-61277251: Successfully fit background model for 1,483,534 bp. Use segment r for 0 bp 2025-01-31 10:07:43,616 DEBUG chr9:61277251-66503751: Successfully fit background model for 5,096,288 bp. Use segment r for 0 bp 2025-01-31 10:07:43,988 DEBUG chr9:66503751-70502751: Successfully fit background model for 3,868,606 bp. Use segment r for 0 bp 2025-01-31 10:07:44,239 DEBUG chr9:70502751-73391251: Successfully fit background model for 2,741,841 bp. Use segment r for 0 bp 2025-01-31 10:07:44,415 DEBUG chr9:73391251-75237251: Successfully fit background model for 1,705,528 bp. Use segment r for 0 bp 2025-01-31 10:07:44,494 DEBUG chr9:75237251-76083001: Successfully fit background model for 801,275 bp. Use segment r for 0 bp 2025-01-31 10:07:44,622 DEBUG chr9:76083001-76938751: Successfully fit background model for 808,650 bp. Use segment r for 7 bp 2025-01-31 10:07:44,713 DEBUG chr9:76938751-77910251: Successfully fit background model for 914,746 bp. Use segment r for 0 bp 2025-01-31 10:07:44,799 DEBUG chr9:77910251-78831751: Successfully fit background model for 813,169 bp. Use segment r for 0 bp 2025-01-31 10:07:47,704 DEBUG chr9:78831751-90286501: Successfully fit background model for 10,024,722 bp. Use segment r for 2,071 bp 2025-01-31 10:07:48,165 DEBUG chr9:90286501-94530751: Successfully fit background model for 3,778,741 bp. Use segment r for 0 bp 2025-01-31 10:07:49,729 DEBUG chr9:94530751-106146751: Successfully fit background model for 11,096,225 bp. Use segment r for 0 bp 2025-01-31 10:07:49,827 DEBUG chr9:106146751-106921751: Successfully fit background model for 746,196 bp. Use segment r for 0 bp 2025-01-31 10:07:49,893 DEBUG chr9:106921751-107254751: Successfully fit background model for 288,220 bp. Use segment r for 0 bp 2025-01-31 10:07:50,128 DEBUG chr9:107254751-109124251: Successfully fit background model for 1,779,141 bp. Use segment r for 0 bp 2025-01-31 10:07:50,213 DEBUG chr9:109124251-109859251: Successfully fit background model for 568,678 bp. Use segment r for 0 bp 2025-01-31 10:07:50,324 DEBUG chr9:109859251-110757251: Successfully fit background model for 873,758 bp. Use segment r for 0 bp 2025-01-31 10:07:51,681 DEBUG chr9:110757251-119315251: Successfully fit background model for 8,083,138 bp. Use segment r for 0 bp 2025-01-31 10:07:52,369 DEBUG chr9:119315251-124595110: Successfully fit background model for 4,737,045 bp. Use segment r for 0 bp 2025-01-31 10:08:45,049 DEBUG chr11:3101000-3204251: Successfully fit background model for 76,214 bp. Use segment r for 0 bp 2025-01-31 10:08:45,484 DEBUG chr11:3204251-6713751: Successfully fit background model for 3,374,744 bp. Use segment r for 0 bp 2025-01-31 10:08:45,744 DEBUG chr11:6713751-9264251: Successfully fit background model for 2,306,020 bp. Use segment r for 0 bp 2025-01-31 10:08:45,952 DEBUG chr11:9264251-11152751: Successfully fit background model for 1,661,647 bp. Use segment r for 0 bp 2025-01-31 10:08:46,088 DEBUG chr11:11152751-12557751: Successfully fit background model for 1,293,898 bp. Use segment r for 0 bp 2025-01-31 10:08:46,434 DEBUG chr11:12557751-16261751: Successfully fit background model for 3,255,685 bp. Use segment r for 0 bp 2025-01-31 10:08:46,532 DEBUG chr11:16261751-17285751: Successfully fit background model for 930,028 bp. Use segment r for 0 bp 2025-01-31 10:08:46,716 DEBUG chr11:17285751-19325751: Successfully fit background model for 1,871,930 bp. Use segment r for 0 bp 2025-01-31 10:08:47,205 DEBUG chr11:19325751-24220751: Successfully fit background model for 4,615,786 bp. Use segment r for 0 bp 2025-01-31 10:08:47,714 DEBUG chr11:24220751-29512251: Successfully fit background model for 4,748,064 bp. Use segment r for 0 bp 2025-01-31 10:08:48,157 DEBUG chr11:29512251-34277251: Successfully fit background model for 4,504,474 bp. Use segment r for 0 bp 2025-01-31 10:08:48,382 DEBUG chr11:34277251-36550251: Successfully fit background model for 2,084,013 bp. Use segment r for 0 bp 2025-01-31 10:08:48,620 DEBUG chr12:3000500-5421751: Successfully fit background model for 2,227,498 bp. Use segment r for 0 bp 2025-01-31 10:08:48,778 DEBUG chr12:5421751-7023251: Successfully fit background model for 1,433,492 bp. Use segment r for 0 bp 2025-01-31 10:08:48,989 DEBUG chr11:36550251-42422251: Successfully fit background model for 5,432,764 bp. Use segment r for 0 bp 2025-01-31 10:08:49,056 DEBUG chr12:7023251-9902751: Successfully fit background model for 2,658,543 bp. Use segment r for 0 bp 2025-01-31 10:08:49,446 DEBUG chr11:42422251-47329001: Successfully fit background model for 4,624,121 bp. Use segment r for 0 bp 2025-01-31 10:08:49,447 DEBUG chr12:9902751-13926251: Successfully fit background model for 3,654,380 bp. Use segment r for 0 bp 2025-01-31 10:08:49,586 DEBUG chr12:13926251-15396751: Successfully fit background model for 1,301,922 bp. Use segment r for 0 bp 2025-01-31 10:08:49,594 DEBUG chr11:47329001-48769751: Successfully fit background model for 1,276,593 bp. Use segment r for 0 bp 2025-01-31 10:08:49,613 DEBUG chr11:48769751-48876251: Successfully fit background model for 103,452 bp. Use segment r for 0 bp 2025-01-31 10:08:49,812 DEBUG chr13:3002000-21157751: Successfully fit background model for 15,923,324 bp. Use segment r for 0 bp 2025-01-31 10:08:49,875 DEBUG chr13:21157751-21480751: Successfully fit background model for 308,708 bp. Use segment r for 0 bp 2025-01-31 10:08:49,905 DEBUG chr13:21480751-21708251: Successfully fit background model for 204,178 bp. Use segment r for 0 bp 2025-01-31 10:08:49,943 DEBUG chr13:21708251-22052251: Successfully fit background model for 288,479 bp. Use segment r for 0 bp 2025-01-31 10:08:50,011 DEBUG chr11:48876251-51526751: Successfully fit background model for 2,391,777 bp. Use segment r for 372 bp 2025-01-31 10:08:50,063 DEBUG chr13:22052251-23284251: Successfully fit background model for 925,483 bp. Use segment r for 0 bp 2025-01-31 10:08:50,076 DEBUG chr11:51526751-52072251: Successfully fit background model for 531,014 bp. Use segment r for 0 bp 2025-01-31 10:08:50,116 DEBUG chr13:23284251-23773751: Successfully fit background model for 454,228 bp. Use segment r for 0 bp 2025-01-31 10:08:50,254 DEBUG chr13:23773751-25223251: Successfully fit background model for 1,375,294 bp. Use segment r for 0 bp 2025-01-31 10:08:50,451 DEBUG chr11:52072251-55661751: Successfully fit background model for 3,455,021 bp. Use segment r for 0 bp 2025-01-31 10:08:50,535 DEBUG chr13:25223251-28075501: Successfully fit background model for 2,543,019 bp. Use segment r for 0 bp 2025-01-31 10:08:50,636 DEBUG chr11:55661751-57617251: Successfully fit background model for 1,821,109 bp. Use segment r for 0 bp 2025-01-31 10:08:51,091 DEBUG chr13:28075501-33929751: Successfully fit background model for 5,266,612 bp. Use segment r for 0 bp 2025-01-31 10:08:51,142 DEBUG chr13:33929751-34350751: Successfully fit background model for 399,359 bp. Use segment r for 0 bp 2025-01-31 10:08:51,202 DEBUG chr12:15396751-24555251: Successfully fit background model for 4,636,701 bp. Use segment r for 1,353 bp 2025-01-31 10:08:51,244 DEBUG chr12:24555251-24829251: Successfully fit background model for 260,242 bp. Use segment r for 0 bp 2025-01-31 10:08:51,452 DEBUG chr11:57617251-63164251: Successfully fit background model for 5,277,842 bp. Use segment r for 488 bp 2025-01-31 10:08:51,476 DEBUG chr13:34350751-37815751: Successfully fit background model for 3,231,054 bp. Use segment r for 0 bp 2025-01-31 10:08:51,505 DEBUG chr13:37815751-38038751: Successfully fit background model for 220,528 bp. Use segment r for 0 bp 2025-01-31 10:08:51,939 DEBUG chr12:24829251-31942751: Successfully fit background model for 6,768,763 bp. Use segment r for 0 bp 2025-01-31 10:08:51,988 DEBUG chr11:63164251-68888251: Successfully fit background model for 5,519,510 bp. Use segment r for 0 bp 2025-01-31 10:08:52,002 DEBUG chr13:38038751-43147251: Successfully fit background model for 4,860,703 bp. Use segment r for 0 bp 2025-01-31 10:08:52,088 DEBUG chr12:31942751-33484251: Successfully fit background model for 1,441,622 bp. Use segment r for 0 bp 2025-01-31 10:08:52,106 DEBUG chr11:68888251-70022751: Successfully fit background model for 1,114,459 bp. Use segment r for 0 bp 2025-01-31 10:08:52,218 DEBUG chr11:70022751-71104751: Successfully fit background model for 1,028,936 bp. Use segment r for 0 bp 2025-01-31 10:08:52,241 DEBUG chr16:3016500-5428251: Successfully fit background model for 1,903,226 bp. Use segment r for 0 bp 2025-01-31 10:08:52,251 DEBUG chr11:71104751-71387751: Successfully fit background model for 232,523 bp. Use segment r for 0 bp 2025-01-31 10:08:52,281 DEBUG chr15:3050500-5097251: Successfully fit background model for 1,741,917 bp. Use segment r for 0 bp 2025-01-31 10:08:52,350 DEBUG chr11:71387751-72385751: Successfully fit background model for 959,229 bp. Use segment r for 0 bp 2025-01-31 10:08:52,374 DEBUG chr12:33484251-36400751: Successfully fit background model for 2,679,374 bp. Use segment r for 0 bp 2025-01-31 10:08:52,442 DEBUG chr11:72385751-73310251: Successfully fit background model for 905,075 bp. Use segment r for 0 bp 2025-01-31 10:08:52,490 DEBUG chr16:5428251-8042251: Successfully fit background model for 2,502,641 bp. Use segment r for 0 bp 2025-01-31 10:08:52,509 DEBUG chr11:73310251-73948251: Successfully fit background model for 527,560 bp. Use segment r for 0 bp 2025-01-31 10:08:52,573 DEBUG chr15:5097251-8094751: Successfully fit background model for 2,737,524 bp. Use segment r for 0 bp 2025-01-31 10:08:52,599 DEBUG chr16:8042251-9054751: Successfully fit background model for 945,682 bp. Use segment r for 0 bp 2025-01-31 10:08:52,606 DEBUG chr11:73948251-74827751: Successfully fit background model for 794,062 bp. Use segment r for 0 bp 2025-01-31 10:08:52,652 DEBUG chr12:36400751-39401251: Successfully fit background model for 2,758,354 bp. Use segment r for 0 bp 2025-01-31 10:08:52,683 DEBUG chr15:8094751-9141751: Successfully fit background model for 947,242 bp. Use segment r for 0 bp 2025-01-31 10:08:52,697 DEBUG chr11:74827751-75678751: Successfully fit background model for 820,951 bp. Use segment r for 0 bp 2025-01-31 10:08:52,699 DEBUG chr16:9054751-10073501: Successfully fit background model for 967,833 bp. Use segment r for 0 bp 2025-01-31 10:08:52,841 DEBUG chr12:39401251-41393751: Successfully fit background model for 1,857,684 bp. Use segment r for 0 bp 2025-01-31 10:08:52,987 DEBUG chr15:9141751-12078751: Successfully fit background model for 2,686,047 bp. Use segment r for 0 bp 2025-01-31 10:08:53,102 DEBUG chr11:75678751-79690251: Successfully fit background model for 3,907,759 bp. Use segment r for 0 bp 2025-01-31 10:08:53,123 DEBUG chr15:12078751-13490251: Successfully fit background model for 1,363,270 bp. Use segment r for 0 bp 2025-01-31 10:08:53,164 DEBUG chr16:10073501-14483751: Successfully fit background model for 4,165,618 bp. Use segment r for 0 bp 2025-01-31 10:08:53,261 DEBUG chr11:79690251-81324251: Successfully fit background model for 1,580,647 bp. Use segment r for 0 bp 2025-01-31 10:08:53,408 DEBUG chr16:14483751-17110251: Successfully fit background model for 2,300,358 bp. Use segment r for 0 bp 2025-01-31 10:08:53,411 DEBUG chr11:81324251-82745251: Successfully fit background model for 1,373,842 bp. Use segment r for 0 bp 2025-01-31 10:08:53,611 DEBUG chr16:17110251-19025251: Successfully fit background model for 1,842,903 bp. Use segment r for 0 bp 2025-01-31 10:08:53,658 DEBUG chr13:43147251-51829751: Successfully fit background model for 7,992,665 bp. Use segment r for 9 bp 2025-01-31 10:08:53,681 DEBUG chr16:19025251-19676501: Successfully fit background model for 514,336 bp. Use segment r for 0 bp 2025-01-31 10:08:53,908 DEBUG chr13:51829751-54437751: Successfully fit background model for 2,522,095 bp. Use segment r for 0 bp 2025-01-31 10:08:54,045 DEBUG chr13:54437751-55726251: Successfully fit background model for 1,244,092 bp. Use segment r for 0 bp 2025-01-31 10:08:54,062 DEBUG chr16:19676501-23497751: Successfully fit background model for 3,570,725 bp. Use segment r for 0 bp 2025-01-31 10:08:54,152 DEBUG chr12:41393751-48888251: Successfully fit background model for 6,568,081 bp. Use segment r for 132,826 bp 2025-01-31 10:08:54,316 DEBUG chr13:55726251-58107751: Successfully fit background model for 2,327,755 bp. Use segment r for 0 bp 2025-01-31 10:08:54,329 DEBUG chr11:82745251-89506251: Successfully fit background model for 6,493,113 bp. Use segment r for 0 bp 2025-01-31 10:08:54,431 DEBUG chr12:48888251-51689751: Successfully fit background model for 2,484,516 bp. Use segment r for 0 bp 2025-01-31 10:08:54,475 DEBUG chr11:89506251-90750251: Successfully fit background model for 1,186,997 bp. Use segment r for 0 bp 2025-01-31 10:08:54,552 DEBUG chr12:51689751-52500751: Successfully fit background model for 746,751 bp. Use segment r for 0 bp 2025-01-31 10:08:54,612 DEBUG chr13:58107751-60987251: Successfully fit background model for 2,729,840 bp. Use segment r for 0 bp 2025-01-31 10:08:54,681 DEBUG chr16:23497751-29270751: Successfully fit background model for 5,412,977 bp. Use segment r for 0 bp 2025-01-31 10:08:54,702 DEBUG chr15:13490251-23158751: Successfully fit background model for 8,632,004 bp. Use segment r for 0 bp 2025-01-31 10:08:54,721 DEBUG chr11:90750251-93350251: Successfully fit background model for 2,392,879 bp. Use segment r for 0 bp 2025-01-31 10:08:54,751 DEBUG chr12:52500751-54651751: Successfully fit background model for 2,066,645 bp. Use segment r for 0 bp 2025-01-31 10:08:54,818 DEBUG chr11:93350251-94127501: Successfully fit background model for 735,960 bp. Use segment r for 0 bp 2025-01-31 10:08:54,829 DEBUG chr12:54651751-55388251: Successfully fit background model for 490,239 bp. Use segment r for 0 bp 2025-01-31 10:08:54,916 DEBUG chr13:60987251-63100251: Successfully fit background model for 1,591,926 bp. Use segment r for 34,419 bp 2025-01-31 10:08:54,935 DEBUG chr15:23158751-25430251: Successfully fit background model for 2,010,541 bp. Use segment r for 0 bp 2025-01-31 10:08:55,017 DEBUG chr15:25430251-25998751: Successfully fit background model for 559,483 bp. Use segment r for 0 bp 2025-01-31 10:08:55,046 DEBUG chr13:63100251-64461251: Successfully fit background model for 1,307,061 bp. Use segment r for 0 bp 2025-01-31 10:08:55,098 DEBUG chr11:94127501-96774251: Successfully fit background model for 2,584,085 bp. Use segment r for 0 bp 2025-01-31 10:08:55,120 DEBUG chr15:25998751-27085251: Successfully fit background model for 998,377 bp. Use segment r for 0 bp 2025-01-31 10:08:55,215 DEBUG chr15:27085251-28064751: Successfully fit background model for 936,878 bp. Use segment r for 0 bp 2025-01-31 10:08:55,300 DEBUG chr12:55388251-59844751: Successfully fit background model for 4,055,024 bp. Use segment r for 0 bp 2025-01-31 10:08:55,364 DEBUG chr11:96774251-99470251: Successfully fit background model for 2,637,479 bp. Use segment r for 0 bp 2025-01-31 10:08:55,466 DEBUG chr11:99470251-100248501: Successfully fit background model for 714,195 bp. Use segment r for 0 bp 2025-01-31 10:08:55,689 DEBUG chr15:28064751-31055251: Successfully fit background model for 2,695,396 bp. Use segment r for 4,169 bp 2025-01-31 10:08:55,714 DEBUG chr12:59844751-64143251: Successfully fit background model for 3,786,792 bp. Use segment r for 0 bp 2025-01-31 10:08:55,734 DEBUG chr11:100248501-102751251: Successfully fit background model for 2,450,683 bp. Use segment r for 0 bp 2025-01-31 10:08:55,762 DEBUG chr15:31055251-31720251: Successfully fit background model for 619,144 bp. Use segment r for 0 bp 2025-01-31 10:08:55,854 DEBUG chr12:64143251-65551751: Successfully fit background model for 1,265,606 bp. Use segment r for 0 bp 2025-01-31 10:08:55,966 DEBUG chr15:31720251-33676251: Successfully fit background model for 1,753,665 bp. Use segment r for 0 bp 2025-01-31 10:08:56,306 DEBUG chr12:65551751-69119751: Successfully fit background model for 3,218,122 bp. Use segment r for 0 bp 2025-01-31 10:08:56,355 DEBUG chr16:29270751-39128751: Successfully fit background model for 9,416,819 bp. Use segment r for 0 bp 2025-01-31 10:08:56,379 DEBUG chr12:69119751-69759251: Successfully fit background model for 609,239 bp. Use segment r for 0 bp 2025-01-31 10:08:56,515 DEBUG chr11:102751251-108467251: Successfully fit background model for 5,497,395 bp. Use segment r for 0 bp 2025-01-31 10:08:56,518 DEBUG chr15:33676251-38278251: Successfully fit background model for 4,238,971 bp. Use segment r for 0 bp 2025-01-31 10:08:56,610 DEBUG chr15:38278251-39114751: Successfully fit background model for 664,554 bp. Use segment r for 0 bp 2025-01-31 10:08:56,682 DEBUG chr13:64461251-72278751: Successfully fit background model for 5,784,426 bp. Use segment r for 5,528 bp 2025-01-31 10:08:56,735 DEBUG chr11:108467251-110603251: Successfully fit background model for 2,051,700 bp. Use segment r for 0 bp 2025-01-31 10:08:56,769 DEBUG chr16:39128751-43521751: Successfully fit background model for 4,108,954 bp. Use segment r for 0 bp 2025-01-31 10:08:56,883 DEBUG chr12:69759251-74463251: Successfully fit background model for 4,493,745 bp. Use segment r for 0 bp 2025-01-31 10:08:56,918 DEBUG chr16:43521751-44756251: Successfully fit background model for 1,178,028 bp. Use segment r for 0 bp 2025-01-31 10:08:56,981 DEBUG chr11:110603251-112455751: Successfully fit background model for 1,765,213 bp. Use segment r for 0 bp 2025-01-31 10:08:56,996 DEBUG chr12:74463251-75504751: Successfully fit background model for 966,093 bp. Use segment r for 0 bp 2025-01-31 10:08:57,082 DEBUG chr13:72278751-76345251: Successfully fit background model for 3,764,583 bp. Use segment r for 0 bp 2025-01-31 10:08:57,166 DEBUG chr12:75504751-76904751: Successfully fit background model for 1,345,301 bp. Use segment r for 0 bp 2025-01-31 10:08:57,256 DEBUG chr11:112455751-115153751: Successfully fit background model for 2,604,992 bp. Use segment r for 0 bp 2025-01-31 10:08:57,260 DEBUG chr15:39114751-44833001: Successfully fit background model for 5,237,460 bp. Use segment r for 0 bp 2025-01-31 10:08:57,284 DEBUG chr13:76345251-78162751: Successfully fit background model for 1,592,311 bp. Use segment r for 0 bp 2025-01-31 10:08:57,311 DEBUG chr13:78162751-78219251: Successfully fit background model for 56,397 bp. Use segment r for 0 bp 2025-01-31 10:08:57,395 DEBUG chr12:76904751-79171251: Successfully fit background model for 2,102,666 bp. Use segment r for 0 bp 2025-01-31 10:08:57,424 DEBUG chr16:44756251-49246001: Successfully fit background model for 3,986,409 bp. Use segment r for 0 bp 2025-01-31 10:08:57,555 DEBUG chr16:49246001-50574751: Successfully fit background model for 1,250,762 bp. Use segment r for 0 bp 2025-01-31 10:08:57,579 DEBUG chr13:78219251-80840251: Successfully fit background model for 2,349,785 bp. Use segment r for 0 bp 2025-01-31 10:08:57,594 DEBUG chr13:80840251-80903251: Successfully fit background model for 61,992 bp. Use segment r for 0 bp 2025-01-31 10:08:57,735 DEBUG chr13:80903251-82104751: Successfully fit background model for 1,121,112 bp. Use segment r for 0 bp 2025-01-31 10:08:57,778 DEBUG chr12:79171251-83012751: Successfully fit background model for 3,622,641 bp. Use segment r for 0 bp 2025-01-31 10:08:57,794 DEBUG chr15:44833001-50284251: Successfully fit background model for 4,891,421 bp. Use segment r for 0 bp 2025-01-31 10:08:57,809 DEBUG chr13:82104751-82805751: Successfully fit background model for 634,246 bp. Use segment r for 0 bp 2025-01-31 10:08:57,902 DEBUG chr13:82805751-83746251: Successfully fit background model for 876,335 bp. Use segment r for 0 bp 2025-01-31 10:08:57,985 DEBUG chr11:115153751-121197751: Successfully fit background model for 5,879,718 bp. Use segment r for 0 bp 2025-01-31 10:08:57,999 DEBUG chr15:50284251-52350751: Successfully fit background model for 1,897,592 bp. Use segment r for 0 bp 2025-01-31 10:08:58,076 DEBUG chr16:50574751-55817751: Successfully fit background model for 4,696,470 bp. Use segment r for 0 bp 2025-01-31 10:08:58,092 DEBUG chr11:121197751-122082543: Successfully fit background model for 733,487 bp. Use segment r for 0 bp 2025-01-31 10:08:58,195 DEBUG chr12:83012751-87265751: Successfully fit background model for 4,146,483 bp. Use segment r for 0 bp 2025-01-31 10:08:58,357 DEBUG chr16:55817751-58833251: Successfully fit background model for 2,708,571 bp. Use segment r for 0 bp 2025-01-31 10:08:58,391 DEBUG chr12:87265751-89214251: Successfully fit background model for 1,410,330 bp. Use segment r for 0 bp 2025-01-31 10:08:58,513 DEBUG chr15:52350751-57801251: Successfully fit background model for 4,967,318 bp. Use segment r for 0 bp 2025-01-31 10:08:58,592 DEBUG chr12:89214251-90376751: Successfully fit background model for 1,120,544 bp. Use segment r for 6,568 bp 2025-01-31 10:08:58,727 DEBUG chr15:57801251-59948751: Successfully fit background model for 2,075,821 bp. Use segment r for 0 bp 2025-01-31 10:08:58,777 DEBUG chr13:83746251-90882751: Successfully fit background model for 6,374,531 bp. Use segment r for 0 bp 2025-01-31 10:08:58,844 DEBUG chr12:90376751-92082751: Successfully fit background model for 1,540,461 bp. Use segment r for 7,410 bp 2025-01-31 10:08:59,018 DEBUG chr16:58833251-64845751: Successfully fit background model for 5,333,966 bp. Use segment r for 0 bp 2025-01-31 10:08:59,042 DEBUG chr16:64845751-64953251: Successfully fit background model for 102,403 bp. Use segment r for 0 bp 2025-01-31 10:08:59,531 DEBUG chr15:59948751-67112751: Successfully fit background model for 6,509,752 bp. Use segment r for 0 bp 2025-01-31 10:08:59,533 DEBUG chr16:64953251-69557751: Successfully fit background model for 4,151,430 bp. Use segment r for 0 bp 2025-01-31 10:08:59,553 DEBUG chr15:67112751-67185251: Successfully fit background model for 69,337 bp. Use segment r for 0 bp 2025-01-31 10:08:59,728 DEBUG chr12:92082751-97634001: Successfully fit background model for 4,991,716 bp. Use segment r for 2,304 bp 2025-01-31 10:08:59,779 DEBUG chr15:67185251-69119251: Successfully fit background model for 1,773,386 bp. Use segment r for 0 bp 2025-01-31 10:08:59,843 DEBUG chr12:97634001-98725251: Successfully fit background model for 999,300 bp. Use segment r for 0 bp 2025-01-31 10:08:59,988 DEBUG chr13:90882751-100648251: Successfully fit background model for 9,184,920 bp. Use segment r for 0 bp 2025-01-31 10:09:00,017 DEBUG chr15:69119251-71625251: Successfully fit background model for 2,273,823 bp. Use segment r for 0 bp 2025-01-31 10:09:00,019 DEBUG chr13:100648251-100794251: Successfully fit background model for 138,713 bp. Use segment r for 0 bp 2025-01-31 10:09:00,155 DEBUG chr15:71625251-73053751: Successfully fit background model for 1,362,059 bp. Use segment r for 0 bp 2025-01-31 10:09:00,178 DEBUG chr15:73053751-73192251: Successfully fit background model for 130,958 bp. Use segment r for 0 bp 2025-01-31 10:09:00,424 DEBUG chr15:73192251-75827751: Successfully fit background model for 2,469,573 bp. Use segment r for 0 bp 2025-01-31 10:09:00,535 DEBUG chr16:69557751-78913501: Successfully fit background model for 8,599,905 bp. Use segment r for 0 bp 2025-01-31 10:09:00,746 DEBUG chr12:98725251-104932251: Successfully fit background model for 5,822,355 bp. Use segment r for 709 bp 2025-01-31 10:09:00,775 DEBUG chr12:104932251-105062251: Successfully fit background model for 127,259 bp. Use segment r for 0 bp 2025-01-31 10:09:00,862 DEBUG chr12:105062251-105944751: Successfully fit background model for 844,518 bp. Use segment r for 0 bp 2025-01-31 10:09:00,944 DEBUG chr16:78913501-83398751: Successfully fit background model for 4,015,728 bp. Use segment r for 0 bp 2025-01-31 10:09:01,167 DEBUG chr15:75827751-82386251: Successfully fit background model for 6,272,515 bp. Use segment r for 0 bp 2025-01-31 10:09:01,344 DEBUG chr12:105944751-110369001: Successfully fit background model for 4,284,251 bp. Use segment r for 0 bp 2025-01-31 10:09:01,400 DEBUG chr16:83398751-87352751: Successfully fit background model for 3,597,002 bp. Use segment r for 0 bp 2025-01-31 10:09:01,445 DEBUG chr16:87352751-87737751: Successfully fit background model for 371,270 bp. Use segment r for 0 bp 2025-01-31 10:09:01,458 DEBUG chr15:82386251-85576751: Successfully fit background model for 3,032,064 bp. Use segment r for 0 bp 2025-01-31 10:09:01,525 DEBUG chr13:100794251-111485751: Successfully fit background model for 9,936,289 bp. Use segment r for 0 bp 2025-01-31 10:09:01,607 DEBUG chr12:110369001-113224751: Successfully fit background model for 2,773,574 bp. Use segment r for 0 bp 2025-01-31 10:09:01,652 DEBUG chr16:87737751-89764251: Successfully fit background model for 1,876,538 bp. Use segment r for 0 bp 2025-01-31 10:09:01,750 DEBUG chr13:111485751-113792251: Successfully fit background model for 2,177,846 bp. Use segment r for 0 bp 2025-01-31 10:09:01,786 DEBUG chr15:85576751-88730751: Successfully fit background model for 3,070,488 bp. Use segment r for 0 bp 2025-01-31 10:09:01,885 DEBUG chr15:88730751-89722251: Successfully fit background model for 937,757 bp. Use segment r for 0 bp 2025-01-31 10:09:01,889 DEBUG chr12:113224751-116242751: Successfully fit background model for 2,489,204 bp. Use segment r for 0 bp 2025-01-31 10:09:01,897 DEBUG chr13:113792251-115284751: Successfully fit background model for 1,437,961 bp. Use segment r for 0 bp 2025-01-31 10:09:02,202 DEBUG chr15:89722251-92415751: Successfully fit background model for 2,530,449 bp. Use segment r for 0 bp 2025-01-31 10:09:02,205 DEBUG chr16:89764251-94458751: Successfully fit background model for 4,552,439 bp. Use segment r for 0 bp 2025-01-31 10:09:02,252 DEBUG chr12:116242751-120129022: Successfully fit background model for 3,486,837 bp. Use segment r for 0 bp 2025-01-31 10:09:02,348 DEBUG chr13:115284751-119407751: Successfully fit background model for 3,768,785 bp. Use segment r for 0 bp 2025-01-31 10:09:02,504 DEBUG chr13:119407751-120421639: Successfully fit background model for 421,218 bp. Use segment r for 209 bp 2025-01-31 10:09:02,540 DEBUG chr16:94458751-98207768: Successfully fit background model for 3,489,875 bp. Use segment r for 0 bp 2025-01-31 10:09:02,920 DEBUG chr15:92415751-98504251: Successfully fit background model for 5,769,652 bp. Use segment r for 0 bp 2025-01-31 10:09:03,391 DEBUG chr15:98504251-103367251: Successfully fit background model for 4,709,508 bp. Use segment r for 0 bp 2025-01-31 10:09:03,495 DEBUG chr15:103367251-104043685: Successfully fit background model for 429,654 bp. Use segment r for 0 bp 2025-01-31 10:09:09,601 DEBUG chr17:3000000-3705251: Successfully fit background model for 671,932 bp. Use segment r for 0 bp 2025-01-31 10:09:09,730 DEBUG chr17:3705251-4882251: Successfully fit background model for 1,105,427 bp. Use segment r for 0 bp 2025-01-31 10:09:09,871 DEBUG chr17:4882251-6270251: Successfully fit background model for 1,292,946 bp. Use segment r for 0 bp 2025-01-31 10:09:12,073 DEBUG chr17:6270251-15885251: Successfully fit background model for 7,791,602 bp. Use segment r for 0 bp 2025-01-31 10:09:12,321 DEBUG chr17:15885251-17855501: Successfully fit background model for 1,604,260 bp. Use segment r for 0 bp 2025-01-31 10:09:12,850 DEBUG chr17:17855501-20506751: Successfully fit background model for 2,374,923 bp. Use segment r for 180 bp 2025-01-31 10:09:13,264 DEBUG chr17:20506751-23531751: Successfully fit background model for 2,321,708 bp. Use segment r for 0 bp 2025-01-31 10:09:14,192 DEBUG chr17:23531751-29394251: Successfully fit background model for 5,674,166 bp. Use segment r for 0 bp 2025-01-31 10:09:14,779 DEBUG chr17:29394251-33815751: Successfully fit background model for 4,143,493 bp. Use segment r for 0 bp 2025-01-31 10:09:14,865 DEBUG chr17:33815751-34142251: Successfully fit background model for 309,221 bp. Use segment r for 0 bp 2025-01-31 10:09:14,908 DEBUG chr17:34142251-34571251: Successfully fit background model for 396,218 bp. Use segment r for 0 bp 2025-01-31 10:09:15,136 DEBUG chr17:34571251-36032751: Successfully fit background model for 1,317,362 bp. Use segment r for 0 bp 2025-01-31 10:09:15,296 DEBUG chr17:36032751-37118751: Successfully fit background model for 942,480 bp. Use segment r for 0 bp 2025-01-31 10:09:15,764 DEBUG chr17:37118751-40486751: Successfully fit background model for 2,855,734 bp. Use segment r for 0 bp 2025-01-31 10:09:16,317 DEBUG chr17:40486751-44392751: Successfully fit background model for 3,514,398 bp. Use segment r for 0 bp 2025-01-31 10:09:16,478 DEBUG chr17:44392751-45551251: Successfully fit background model for 1,113,508 bp. Use segment r for 0 bp 2025-01-31 10:09:16,902 DEBUG chr17:45551251-48702251: Successfully fit background model for 3,050,483 bp. Use segment r for 0 bp 2025-01-31 10:09:17,183 DEBUG chr17:48702251-51582751: Successfully fit background model for 2,794,299 bp. Use segment r for 0 bp 2025-01-31 10:09:17,560 DEBUG chr17:51582751-53136251: Successfully fit background model for 1,411,832 bp. Use segment r for 0 bp 2025-01-31 10:09:17,797 DEBUG chr17:53136251-53692251: Successfully fit background model for 490,738 bp. Use segment r for 0 bp 2025-01-31 10:09:18,242 DEBUG chr17:53692251-55612251: Successfully fit background model for 1,619,881 bp. Use segment r for 0 bp 2025-01-31 10:09:18,413 DEBUG chr17:55612251-57359251: Successfully fit background model for 1,675,165 bp. Use segment r for 0 bp 2025-01-31 10:09:19,082 DEBUG chr17:57359251-62584001: Successfully fit background model for 4,697,755 bp. Use segment r for 0 bp 2025-01-31 10:09:19,457 DEBUG chr17:62584001-64580751: Successfully fit background model for 1,864,872 bp. Use segment r for 0 bp 2025-01-31 10:09:19,717 DEBUG chr17:64580751-65241001: Successfully fit background model for 618,534 bp. Use segment r for 0 bp 2025-01-31 10:09:19,961 DEBUG chr17:65241001-66590251: Successfully fit background model for 1,254,969 bp. Use segment r for 0 bp 2025-01-31 10:09:20,346 DEBUG chr17:66590251-70452751: Successfully fit background model for 3,590,231 bp. Use segment r for 0 bp 2025-01-31 10:09:20,480 DEBUG chr17:70452751-71919251: Successfully fit background model for 1,419,106 bp. Use segment r for 0 bp 2025-01-31 10:09:20,877 DEBUG chr17:71919251-75980751: Successfully fit background model for 3,839,168 bp. Use segment r for 0 bp 2025-01-31 10:09:21,039 DEBUG chr17:75980751-77768251: Successfully fit background model for 1,639,164 bp. Use segment r for 0 bp 2025-01-31 10:09:21,371 DEBUG chr17:77768251-81200751: Successfully fit background model for 3,273,165 bp. Use segment r for 0 bp 2025-01-31 10:09:21,513 DEBUG chr17:81200751-82618751: Successfully fit background model for 1,284,600 bp. Use segment r for 0 bp 2025-01-31 10:09:21,599 DEBUG chr17:82618751-83512251: Successfully fit background model for 807,342 bp. Use segment r for 0 bp 2025-01-31 10:09:22,211 DEBUG chr17:83512251-88911251: Successfully fit background model for 5,235,829 bp. Use segment r for 0 bp 2025-01-31 10:09:22,801 DEBUG chr17:88911251-94987271: Successfully fit background model for 5,407,137 bp. Use segment r for 0 bp 2025-01-31 10:10:04,175 DEBUG chr18:3000500-4918751: Successfully fit background model for 1,653,050 bp. Use segment r for 0 bp 2025-01-31 10:10:04,394 DEBUG chr18:4918751-7093251: Successfully fit background model for 1,958,300 bp. Use segment r for 0 bp 2025-01-31 10:10:05,738 DEBUG chr18:7093251-15586751: Successfully fit background model for 7,818,850 bp. Use segment r for 0 bp 2025-01-31 10:10:06,131 DEBUG chr18:15586751-19640251: Successfully fit background model for 3,619,896 bp. Use segment r for 0 bp 2025-01-31 10:10:06,362 DEBUG chr18:19640251-22034251: Successfully fit background model for 2,212,135 bp. Use segment r for 0 bp 2025-01-31 10:10:06,539 DEBUG chr18:22034251-23802751: Successfully fit background model for 1,600,122 bp. Use segment r for 0 bp 2025-01-31 10:10:06,756 DEBUG chr18:23802751-26067751: Successfully fit background model for 2,145,719 bp. Use segment r for 0 bp 2025-01-31 10:10:07,399 DEBUG chr18:26067751-31581251: Successfully fit background model for 5,087,389 bp. Use segment r for 0 bp 2025-01-31 10:10:07,508 DEBUG chr18:31581251-32568751: Successfully fit background model for 951,995 bp. Use segment r for 0 bp 2025-01-31 10:10:07,725 DEBUG chr18:32568751-34216751: Successfully fit background model for 1,484,574 bp. Use segment r for 0 bp 2025-01-31 10:10:07,992 DEBUG chr18:34216751-36803751: Successfully fit background model for 2,527,653 bp. Use segment r for 0 bp 2025-01-31 10:10:08,248 DEBUG chr18:36803751-39494751: Successfully fit background model for 2,533,043 bp. Use segment r for 0 bp 2025-01-31 10:10:09,151 DEBUG chr18:39494751-46396751: Successfully fit background model for 6,331,469 bp. Use segment r for 0 bp 2025-01-31 10:10:09,256 DEBUG chr18:46396751-47371751: Successfully fit background model for 926,345 bp. Use segment r for 0 bp 2025-01-31 10:10:09,462 DEBUG chr18:47371751-49119751: Successfully fit background model for 1,601,649 bp. Use segment r for 0 bp 2025-01-31 10:10:09,589 DEBUG chr18:49119751-50471251: Successfully fit background model for 1,240,521 bp. Use segment r for 0 bp 2025-01-31 10:10:09,718 DEBUG chr18:50471251-51919251: Successfully fit background model for 1,288,550 bp. Use segment r for 0 bp 2025-01-31 10:10:10,273 DEBUG chr18:51919251-56552751: Successfully fit background model for 4,331,661 bp. Use segment r for 0 bp 2025-01-31 10:10:10,305 DEBUG chr18:56552751-56769251: Successfully fit background model for 210,566 bp. Use segment r for 0 bp 2025-01-31 10:10:10,730 DEBUG chr18:56769251-60468251: Successfully fit background model for 3,436,329 bp. Use segment r for 0 bp 2025-01-31 10:10:10,789 DEBUG chr19:3080000-3258001: Successfully fit background model for 111,657 bp. Use segment r for 0 bp 2025-01-31 10:10:10,856 DEBUG chr18:60468251-61750251: Successfully fit background model for 1,257,131 bp. Use segment r for 0 bp 2025-01-31 10:10:11,264 DEBUG chr19:3258001-7608751: Successfully fit background model for 4,112,857 bp. Use segment r for 0 bp 2025-01-31 10:10:11,353 DEBUG chr19:7608751-8328751: Successfully fit background model for 535,481 bp. Use segment r for 0 bp 2025-01-31 10:10:11,386 DEBUG chr18:61750251-67203751: Successfully fit background model for 5,207,315 bp. Use segment r for 0 bp 2025-01-31 10:10:11,452 DEBUG chr18:67203751-67739751: Successfully fit background model for 524,902 bp. Use segment r for 0 bp 2025-01-31 10:10:11,458 DEBUG chr19:8328751-9137251: Successfully fit background model for 736,851 bp. Use segment r for 0 bp 2025-01-31 10:10:11,539 DEBUG chr19:9137251-9867251: Successfully fit background model for 405,918 bp. Use segment r for 0 bp 2025-01-31 10:10:11,663 DEBUG chr19:9867251-10992251: Successfully fit background model for 1,106,485 bp. Use segment r for 0 bp 2025-01-31 10:10:11,707 DEBUG chr18:67739751-70469251: Successfully fit background model for 2,594,685 bp. Use segment r for 0 bp 2025-01-31 10:10:11,732 DEBUG chr18:70469251-70659751: Successfully fit background model for 173,096 bp. Use segment r for 0 bp 2025-01-31 10:10:11,740 DEBUG chr19:10992251-11713251: Successfully fit background model for 637,092 bp. Use segment r for 0 bp 2025-01-31 10:10:11,777 DEBUG chr19:11713251-12023751: Successfully fit background model for 297,463 bp. Use segment r for 0 bp 2025-01-31 10:10:12,034 DEBUG chr18:70659751-73533251: Successfully fit background model for 2,617,865 bp. Use segment r for 0 bp 2025-01-31 10:10:12,170 DEBUG chr19:12023751-15612751: Successfully fit background model for 3,257,910 bp. Use segment r for 0 bp 2025-01-31 10:10:12,350 DEBUG chr19:15612751-17448751: Successfully fit background model for 1,756,230 bp. Use segment r for 0 bp 2025-01-31 10:10:12,455 DEBUG chr19:17448751-18289001: Successfully fit background model for 791,938 bp. Use segment r for 0 bp 2025-01-31 10:10:12,514 DEBUG chr19:18289001-18843751: Successfully fit background model for 511,633 bp. Use segment r for 0 bp 2025-01-31 10:10:12,675 DEBUG chr18:73533251-79171751: Successfully fit background model for 5,321,890 bp. Use segment r for 0 bp 2025-01-31 10:10:12,676 DEBUG chr19:18843751-20408251: Successfully fit background model for 1,457,640 bp. Use segment r for 0 bp 2025-01-31 10:10:12,764 DEBUG chr18:79171751-80038251: Successfully fit background model for 770,191 bp. Use segment r for 0 bp 2025-01-31 10:10:12,818 DEBUG chr18:80038251-80374751: Successfully fit background model for 329,832 bp. Use segment r for 0 bp 2025-01-31 10:10:12,909 DEBUG chr19:20408251-22824251: Successfully fit background model for 2,245,303 bp. Use segment r for 0 bp 2025-01-31 10:10:13,109 DEBUG chr19:22824251-24951001: Successfully fit background model for 2,050,715 bp. Use segment r for 0 bp 2025-01-31 10:10:13,295 DEBUG chr18:80374751-85475751: Successfully fit background model for 4,785,376 bp. Use segment r for 0 bp 2025-01-31 10:10:13,436 DEBUG chr19:24951001-28481751: Successfully fit background model for 3,360,306 bp. Use segment r for 0 bp 2025-01-31 10:10:13,611 DEBUG chr19:28481751-30263251: Successfully fit background model for 1,727,863 bp. Use segment r for 0 bp 2025-01-31 10:10:13,767 DEBUG chr18:85475751-90702639: Successfully fit background model for 4,438,086 bp. Use segment r for 0 bp 2025-01-31 10:10:13,789 DEBUG chr19:30263251-32172251: Successfully fit background model for 1,799,811 bp. Use segment r for 0 bp 2025-01-31 10:10:13,873 DEBUG chr19:32172251-32973251: Successfully fit background model for 765,587 bp. Use segment r for 0 bp 2025-01-31 10:10:14,141 DEBUG chr19:32973251-35715751: Successfully fit background model for 2,423,799 bp. Use segment r for 0 bp 2025-01-31 10:10:14,456 DEBUG chr19:35715751-38997251: Successfully fit background model for 3,155,552 bp. Use segment r for 0 bp 2025-01-31 10:10:14,558 DEBUG chr19:38997251-39922251: Successfully fit background model for 676,424 bp. Use segment r for 0 bp 2025-01-31 10:10:14,746 DEBUG chr19:39922251-41636751: Successfully fit background model for 1,611,975 bp. Use segment r for 0 bp 2025-01-31 10:10:14,869 DEBUG chr19:41636751-42908251: Successfully fit background model for 1,244,700 bp. Use segment r for 0 bp 2025-01-31 10:10:14,924 DEBUG chr19:42908251-43434251: Successfully fit background model for 480,664 bp. Use segment r for 0 bp 2025-01-31 10:10:15,295 DEBUG chr19:43434251-46971251: Successfully fit background model for 3,436,981 bp. Use segment r for 0 bp 2025-01-31 10:10:15,461 DEBUG chr19:46971251-48606251: Successfully fit background model for 1,576,975 bp. Use segment r for 0 bp 2025-01-31 10:10:15,866 DEBUG chr19:48606251-52650251: Successfully fit background model for 3,744,999 bp. Use segment r for 0 bp 2025-01-31 10:10:17,170 DEBUG chr19:52650251-61431566: Successfully fit background model for 8,325,928 bp. Use segment r for 0 bp 2025-01-31 10:11:19,669 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:11:19,670 INFO Calculating per-bp p-values 2025-01-31 10:11:19,671 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:11:19,725 DEBUG chr1: Calculating p-values 2025-01-31 10:11:19,728 DEBUG chr4: Calculating p-values 2025-01-31 10:11:19,730 DEBUG chrX: Calculating p-values 2025-01-31 10:11:19,729 DEBUG chr2: Calculating p-values 2025-01-31 10:11:19,730 DEBUG chr3: Calculating p-values 2025-01-31 10:11:19,731 DEBUG chr5: Calculating p-values 2025-01-31 10:11:55,907 DEBUG Saving p-values for chrX 2025-01-31 10:12:01,915 DEBUG Saving p-values for chr3 2025-01-31 10:12:09,924 DEBUG Saving p-values for chr5 2025-01-31 10:12:10,516 DEBUG Saving p-values for chr4 2025-01-31 10:12:18,181 DEBUG Saving p-values for chr2 2025-01-31 10:12:23,453 DEBUG Saving p-values for chr1 2025-01-31 10:12:25,448 DEBUG chr6: Calculating p-values 2025-01-31 10:12:32,145 DEBUG chr7: Calculating p-values 2025-01-31 10:12:46,765 DEBUG chr10: Calculating p-values 2025-01-31 10:12:47,275 DEBUG chr8: Calculating p-values 2025-01-31 10:12:55,196 DEBUG chr14: Calculating p-values 2025-01-31 10:13:06,839 DEBUG chr9: Calculating p-values 2025-01-31 10:13:13,397 DEBUG Saving p-values for chr6 2025-01-31 10:13:20,793 DEBUG Saving p-values for chr7 2025-01-31 10:13:22,918 DEBUG Saving p-values for chr10 2025-01-31 10:13:25,159 DEBUG Saving p-values for chr14 2025-01-31 10:13:28,130 DEBUG Saving p-values for chr8 2025-01-31 10:13:44,829 DEBUG chr11: Calculating p-values 2025-01-31 10:13:47,300 DEBUG chr13: Calculating p-values 2025-01-31 10:13:48,235 DEBUG chr12: Calculating p-values 2025-01-31 10:13:49,078 DEBUG chr15: Calculating p-values 2025-01-31 10:13:49,876 DEBUG Saving p-values for chr9 2025-01-31 10:14:00,114 DEBUG chr16: Calculating p-values 2025-01-31 10:14:17,433 DEBUG chr17: Calculating p-values 2025-01-31 10:14:23,833 DEBUG Saving p-values for chr12 2025-01-31 10:14:27,902 DEBUG Saving p-values for chr13 2025-01-31 10:14:28,366 DEBUG Saving p-values for chr15 2025-01-31 10:14:31,018 DEBUG Saving p-values for chr16 2025-01-31 10:14:37,304 DEBUG Saving p-values for chr11 2025-01-31 10:14:47,282 DEBUG chrY: Calculating p-values 2025-01-31 10:14:47,359 DEBUG Saving p-values for chr17 2025-01-31 10:14:49,384 DEBUG chr18: Calculating p-values 2025-01-31 10:14:50,733 DEBUG chr19: Calculating p-values 2025-01-31 10:15:10,932 DEBUG Saving p-values for chr18 2025-01-31 10:15:11,845 DEBUG Saving p-values for chr19 2025-01-31 10:15:28,030 DEBUG Results of calc_pvals emitted. 2025-01-31 10:15:28,031 INFO Converting threshold values to bigwig 2025-01-31 10:15:28,031 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:15:50,306 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:16:25,429 INFO Converting background quantile values to bigwig 2025-01-31 10:16:25,430 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:17:04,575 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:17:33,263 INFO Calculating per-bp FDRs 2025-01-31 10:17:33,265 DEBUG AG81949: Extracting raw P-values 2025-01-31 10:18:16,720 DEBUG AG81949: Computing FDR 2025-01-31 10:18:37,193 DEBUG AG81949: Saving FDRs to parquet 2025-01-31 10:19:51,597 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:19:51,600 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:19:51,600 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:19:54,889 DEBUG chr3: Calling hotspots 2025-01-31 10:19:54,896 DEBUG chr5: Calling hotspots 2025-01-31 10:19:55,057 DEBUG chrX: Calling hotspots 2025-01-31 10:19:55,305 DEBUG chr4: Calling hotspots 2025-01-31 10:19:55,495 DEBUG chr2: Calling hotspots 2025-01-31 10:19:55,747 DEBUG chr1: Calling hotspots 2025-01-31 10:19:59,866 DEBUG chr5: 5280 hotspots called 2025-01-31 10:20:00,028 DEBUG chr3: 4155 hotspots called 2025-01-31 10:20:00,958 DEBUG chr4: 5478 hotspots called 2025-01-31 10:20:01,027 DEBUG chrX: 2357 hotspots called 2025-01-31 10:20:01,928 DEBUG chr2: 6565 hotspots called 2025-01-31 10:20:02,192 DEBUG chr1: 5672 hotspots called 2025-01-31 10:20:02,453 DEBUG chr6: Calling hotspots 2025-01-31 10:20:02,580 DEBUG chr7: Calling hotspots 2025-01-31 10:20:03,428 DEBUG chr8: Calling hotspots 2025-01-31 10:20:03,514 DEBUG chr10: Calling hotspots 2025-01-31 10:20:04,091 DEBUG chr14: Calling hotspots 2025-01-31 10:20:04,645 DEBUG chr9: Calling hotspots 2025-01-31 10:20:06,798 DEBUG chr7: 5348 hotspots called 2025-01-31 10:20:06,875 DEBUG chr6: 4367 hotspots called 2025-01-31 10:20:07,528 DEBUG chr10: 3971 hotspots called 2025-01-31 10:20:07,563 DEBUG chr8: 3920 hotspots called 2025-01-31 10:20:07,905 DEBUG chr9: 4564 hotspots called 2025-01-31 10:20:07,940 DEBUG chr14: 2777 hotspots called 2025-01-31 10:20:09,095 DEBUG chr13: Calling hotspots 2025-01-31 10:20:09,113 DEBUG chr11: Calling hotspots 2025-01-31 10:20:09,421 DEBUG chr15: Calling hotspots 2025-01-31 10:20:09,668 DEBUG chr17: Calling hotspots 2025-01-31 10:20:09,767 DEBUG chr12: Calling hotspots 2025-01-31 10:20:09,785 DEBUG chr16: Calling hotspots 2025-01-31 10:20:12,072 DEBUG chr15: 3256 hotspots called 2025-01-31 10:20:12,119 DEBUG chr13: 3702 hotspots called 2025-01-31 10:20:12,287 DEBUG chr16: 2850 hotspots called 2025-01-31 10:20:12,332 DEBUG chr17: 3623 hotspots called 2025-01-31 10:20:12,518 DEBUG chr11: 5902 hotspots called 2025-01-31 10:20:12,836 DEBUG chr12: 3250 hotspots called 2025-01-31 10:20:12,986 DEBUG chr19: Calling hotspots 2025-01-31 10:20:13,185 DEBUG chr18: Calling hotspots 2025-01-31 10:20:14,324 DEBUG chr19: 2658 hotspots called 2025-01-31 10:20:15,081 DEBUG chr18: 2286 hotspots called 2025-01-31 10:20:15,301 DEBUG Results of call_hotspots emitted. 2025-01-31 10:20:15,337 INFO There are 81981 hotspots called at FDR=0.05 2025-01-31 10:20:19,057 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:20:19,057 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:20:27,334 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:20:27,482 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:20:27,507 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:20:27,711 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:20:29,080 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:20:29,253 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:20:36,547 DEBUG chr4: 6703 peaks called 2025-01-31 10:20:37,102 DEBUG chr5: 6449 peaks called 2025-01-31 10:20:37,808 DEBUG chr3: 5033 peaks called 2025-01-31 10:20:37,909 DEBUG chrX: 2808 peaks called 2025-01-31 10:20:38,533 DEBUG chr2: 8133 peaks called 2025-01-31 10:20:39,759 DEBUG chr1: 6785 peaks called 2025-01-31 10:20:43,258 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:20:44,001 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:20:44,176 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:20:44,197 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:20:44,333 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:20:45,422 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:20:50,272 DEBUG chr6: 5342 peaks called 2025-01-31 10:20:50,635 DEBUG chr14: 3325 peaks called 2025-01-31 10:20:50,903 DEBUG chr8: 4969 peaks called 2025-01-31 10:20:51,079 DEBUG chr10: 4945 peaks called 2025-01-31 10:20:51,317 DEBUG chr7: 6805 peaks called 2025-01-31 10:20:51,759 DEBUG chr9: 5675 peaks called 2025-01-31 10:20:56,146 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:20:56,329 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:20:56,389 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:20:56,413 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:20:56,529 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:20:56,529 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:20:59,180 DEBUG chr16: 3467 peaks called 2025-01-31 10:20:59,343 DEBUG chr17: 4641 peaks called 2025-01-31 10:20:59,720 DEBUG chr15: 4092 peaks called 2025-01-31 10:20:59,932 DEBUG chr13: 4652 peaks called 2025-01-31 10:20:59,972 DEBUG chr11: 7658 peaks called 2025-01-31 10:21:00,060 DEBUG chr12: 3934 peaks called 2025-01-31 10:21:01,581 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:21:01,826 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:21:03,290 DEBUG chr19: 3459 peaks called 2025-01-31 10:21:04,109 DEBUG chr18: 2742 peaks called 2025-01-31 10:21:04,509 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:21:04,550 INFO There are 101617 peaks called at FDR=0.05 2025-01-31 10:21:06,237 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:21:06,238 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:21:09,830 DEBUG chr3: Calling hotspots 2025-01-31 10:21:09,858 DEBUG chr5: Calling hotspots 2025-01-31 10:21:09,905 DEBUG chr4: Calling hotspots 2025-01-31 10:21:09,972 DEBUG chrX: Calling hotspots 2025-01-31 10:21:10,617 DEBUG chr2: Calling hotspots 2025-01-31 10:21:10,766 DEBUG chr1: Calling hotspots 2025-01-31 10:21:14,192 DEBUG chr5: 4160 hotspots called 2025-01-31 10:21:14,221 DEBUG chr4: 4343 hotspots called 2025-01-31 10:21:14,309 DEBUG chrX: 1700 hotspots called 2025-01-31 10:21:14,364 DEBUG chr3: 3221 hotspots called 2025-01-31 10:21:15,083 DEBUG chr2: 5229 hotspots called 2025-01-31 10:21:15,678 DEBUG chr1: 4232 hotspots called 2025-01-31 10:21:16,900 DEBUG chr6: Calling hotspots 2025-01-31 10:21:16,904 DEBUG chr7: Calling hotspots 2025-01-31 10:21:16,922 DEBUG chr10: Calling hotspots 2025-01-31 10:21:17,034 DEBUG chr8: Calling hotspots 2025-01-31 10:21:17,307 DEBUG chr14: Calling hotspots 2025-01-31 10:21:17,706 DEBUG chr9: Calling hotspots 2025-01-31 10:21:19,805 DEBUG chr10: 3104 hotspots called 2025-01-31 10:21:20,107 DEBUG chr14: 2062 hotspots called 2025-01-31 10:21:20,132 DEBUG chr7: 4273 hotspots called 2025-01-31 10:21:20,163 DEBUG chr8: 3073 hotspots called 2025-01-31 10:21:20,423 DEBUG chr6: 3378 hotspots called 2025-01-31 10:21:20,868 DEBUG chr9: 3645 hotspots called 2025-01-31 10:21:21,960 DEBUG chr15: Calling hotspots 2025-01-31 10:21:22,086 DEBUG chr11: Calling hotspots 2025-01-31 10:21:22,187 DEBUG chr16: Calling hotspots 2025-01-31 10:21:22,204 DEBUG chr12: Calling hotspots 2025-01-31 10:21:22,233 DEBUG chr13: Calling hotspots 2025-01-31 10:21:22,542 DEBUG chr17: Calling hotspots 2025-01-31 10:21:24,450 DEBUG chr15: 2545 hotspots called 2025-01-31 10:21:24,596 DEBUG chr16: 2146 hotspots called 2025-01-31 10:21:24,750 DEBUG chr17: 2954 hotspots called 2025-01-31 10:21:24,990 DEBUG chr13: 2873 hotspots called 2025-01-31 10:21:25,005 DEBUG chr11: 4901 hotspots called 2025-01-31 10:21:25,073 DEBUG chr12: 2485 hotspots called 2025-01-31 10:21:25,421 DEBUG chr19: Calling hotspots 2025-01-31 10:21:25,638 DEBUG chr18: Calling hotspots 2025-01-31 10:21:26,853 DEBUG chr19: 2132 hotspots called 2025-01-31 10:21:27,652 DEBUG chr18: 1732 hotspots called 2025-01-31 10:21:27,852 DEBUG Results of call_hotspots emitted. 2025-01-31 10:21:27,881 INFO There are 64188 hotspots called at FDR=0.01 2025-01-31 10:21:30,791 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:21:30,791 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:21:38,634 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:21:38,663 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:21:38,766 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:21:38,987 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:21:40,388 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:21:40,637 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:21:42,881 DEBUG chr3: 4002 peaks called 2025-01-31 10:21:43,243 DEBUG chr5: 5226 peaks called 2025-01-31 10:21:43,350 DEBUG chr4: 5448 peaks called 2025-01-31 10:21:43,783 DEBUG chrX: 2161 peaks called 2025-01-31 10:21:46,016 DEBUG chr2: 6593 peaks called 2025-01-31 10:21:46,268 DEBUG chr1: 5248 peaks called 2025-01-31 10:21:49,251 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:21:49,259 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:21:49,695 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:21:49,835 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:21:51,536 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:21:52,043 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:21:52,953 DEBUG chr8: 4013 peaks called 2025-01-31 10:21:53,042 DEBUG chr10: 3963 peaks called 2025-01-31 10:21:53,486 DEBUG chr7: 5557 peaks called 2025-01-31 10:21:54,283 DEBUG chr6: 4221 peaks called 2025-01-31 10:21:55,303 DEBUG chr14: 2576 peaks called 2025-01-31 10:21:56,349 DEBUG chr9: 4587 peaks called 2025-01-31 10:21:58,115 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:21:58,396 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:21:58,779 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:21:59,034 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:21:59,741 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:22:01,041 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:22:01,374 DEBUG chr11: 6435 peaks called 2025-01-31 10:22:01,809 DEBUG chr15: 3282 peaks called 2025-01-31 10:22:01,809 DEBUG chr13: 3721 peaks called 2025-01-31 10:22:02,186 DEBUG chr12: 3102 peaks called 2025-01-31 10:22:02,291 DEBUG chr16: 2712 peaks called 2025-01-31 10:22:03,739 DEBUG chr17: 3846 peaks called 2025-01-31 10:22:03,789 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:22:04,191 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:22:05,358 DEBUG chr19: 2815 peaks called 2025-01-31 10:22:06,648 DEBUG chr18: 2125 peaks called 2025-01-31 10:22:06,969 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:22:07,000 INFO There are 81633 peaks called at FDR=0.01 2025-01-31 10:22:08,349 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:22:08,349 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:22:11,561 DEBUG chr5: Calling hotspots 2025-01-31 10:22:11,663 DEBUG chr3: Calling hotspots 2025-01-31 10:22:11,706 DEBUG chr4: Calling hotspots 2025-01-31 10:22:11,798 DEBUG chrX: Calling hotspots 2025-01-31 10:22:12,002 DEBUG chr2: Calling hotspots 2025-01-31 10:22:12,276 DEBUG chr1: Calling hotspots 2025-01-31 10:22:14,989 DEBUG chr5: 3527 hotspots called 2025-01-31 10:22:15,181 DEBUG chr4: 3653 hotspots called 2025-01-31 10:22:15,619 DEBUG chr3: 2667 hotspots called 2025-01-31 10:22:15,695 DEBUG chrX: 1449 hotspots called 2025-01-31 10:22:16,019 DEBUG chr2: 4389 hotspots called 2025-01-31 10:22:16,794 DEBUG chr1: 3497 hotspots called 2025-01-31 10:22:17,563 DEBUG chr6: Calling hotspots 2025-01-31 10:22:17,807 DEBUG chr10: Calling hotspots 2025-01-31 10:22:17,860 DEBUG chr7: Calling hotspots 2025-01-31 10:22:18,061 DEBUG chr8: Calling hotspots 2025-01-31 10:22:18,210 DEBUG chr14: Calling hotspots 2025-01-31 10:22:19,166 DEBUG chr9: Calling hotspots 2025-01-31 10:22:20,825 DEBUG chr6: 2796 hotspots called 2025-01-31 10:22:20,831 DEBUG chr10: 2611 hotspots called 2025-01-31 10:22:20,878 DEBUG chr14: 1762 hotspots called 2025-01-31 10:22:20,888 DEBUG chr8: 2646 hotspots called 2025-01-31 10:22:21,442 DEBUG chr7: 3617 hotspots called 2025-01-31 10:22:22,291 DEBUG chr9: 3067 hotspots called 2025-01-31 10:22:22,771 DEBUG chr15: Calling hotspots 2025-01-31 10:22:22,828 DEBUG chr11: Calling hotspots 2025-01-31 10:22:22,886 DEBUG chr13: Calling hotspots 2025-01-31 10:22:23,090 DEBUG chr16: Calling hotspots 2025-01-31 10:22:23,111 DEBUG chr12: Calling hotspots 2025-01-31 10:22:23,855 DEBUG chr17: Calling hotspots 2025-01-31 10:22:25,071 DEBUG chr15: 2169 hotspots called 2025-01-31 10:22:25,393 DEBUG chr16: 1786 hotspots called 2025-01-31 10:22:25,491 DEBUG chr13: 2412 hotspots called 2025-01-31 10:22:25,560 DEBUG chr11: 4216 hotspots called 2025-01-31 10:22:25,899 DEBUG chr12: 2069 hotspots called 2025-01-31 10:22:26,223 DEBUG chr17: 2497 hotspots called 2025-01-31 10:22:26,253 DEBUG chr19: Calling hotspots 2025-01-31 10:22:26,351 DEBUG chr18: Calling hotspots 2025-01-31 10:22:27,670 DEBUG chr19: 1829 hotspots called 2025-01-31 10:22:28,227 DEBUG chr18: 1412 hotspots called 2025-01-31 10:22:28,409 DEBUG Results of call_hotspots emitted. 2025-01-31 10:22:28,441 INFO There are 54071 hotspots called at FDR=0.001 2025-01-31 10:22:30,911 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:22:30,912 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:22:38,661 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:22:38,922 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:22:38,975 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:22:39,247 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:22:39,848 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:22:39,928 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:22:43,184 DEBUG chr5: 4430 peaks called 2025-01-31 10:22:43,351 DEBUG chr3: 3336 peaks called 2025-01-31 10:22:43,716 DEBUG chr4: 4590 peaks called 2025-01-31 10:22:43,791 DEBUG chrX: 1833 peaks called 2025-01-31 10:22:45,128 DEBUG chr1: 4332 peaks called 2025-01-31 10:22:45,774 DEBUG chr2: 5488 peaks called 2025-01-31 10:22:49,504 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:22:49,621 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:22:50,094 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:22:50,192 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:22:50,496 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:22:51,280 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:22:53,210 DEBUG chr10: 3332 peaks called 2025-01-31 10:22:53,215 DEBUG chr8: 3434 peaks called 2025-01-31 10:22:54,061 DEBUG chr7: 4710 peaks called 2025-01-31 10:22:54,090 DEBUG chr14: 2196 peaks called 2025-01-31 10:22:54,274 DEBUG chr6: 3494 peaks called 2025-01-31 10:22:55,483 DEBUG chr9: 3865 peaks called 2025-01-31 10:22:58,619 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:22:58,667 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:22:58,848 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:22:59,065 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:22:59,254 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:22:59,685 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:23:01,672 DEBUG chr16: 2238 peaks called 2025-01-31 10:23:01,930 DEBUG chr11: 5502 peaks called 2025-01-31 10:23:02,096 DEBUG chr13: 3098 peaks called 2025-01-31 10:23:02,308 DEBUG chr15: 2774 peaks called 2025-01-31 10:23:02,508 DEBUG chr12: 2590 peaks called 2025-01-31 10:23:02,535 DEBUG chr17: 3252 peaks called 2025-01-31 10:23:03,886 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:23:04,282 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:23:05,416 DEBUG chr19: 2420 peaks called 2025-01-31 10:23:06,801 DEBUG chr18: 1759 peaks called 2025-01-31 10:23:07,076 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:23:07,112 INFO There are 68673 peaks called at FDR=0.001 2025-01-31 10:23:08,313 INFO Saving density 2025-01-31 10:23:08,314 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:23:21,963 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:23:26,410 DEBUG Converting density to bigwig 2025-01-31 10:24:27,554 INFO Program finished