2025-01-31 09:31:57,534 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:57,537 INFO Extracting cutcounts from bam file 2025-01-31 09:34:37,661 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:37,718 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:37,722 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:37,723 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:37,724 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:37,724 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:37,725 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:40,417 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:41,415 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:41,462 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:41,544 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:42,755 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:42,773 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:43,125 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:47,039 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:47,217 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:47,224 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:47,263 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:47,371 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:47,428 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:47,528 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:48,753 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:49,775 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:49,775 INFO Total cutcounts = 26274438 2025-01-31 09:34:49,781 INFO Smoothing signal using MODWT 2025-01-31 09:34:49,783 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:49,845 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:49,849 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:49,850 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:49,850 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:49,850 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:49,850 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:35,453 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:37,692 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:41,424 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:43,571 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:13,162 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:26,222 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:45,236 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:48,360 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:55,960 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:56,333 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:02,733 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:28,736 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:36,669 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:38,182 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:40,940 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:43:10,438 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:43:10,439 INFO Estimating parameters of background model 2025-01-31 09:43:10,439 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:43:15,683 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:43:15,786 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:43:15,869 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:43:16,532 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:43:16,620 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:43:17,835 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:43:40,914 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:43:40,916 DEBUG chrX: Signal quantile: 0.994. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:43:41,757 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:43:41,759 DEBUG chr3: Signal quantile: 0.990. signal threshold: 13. Best RMSEA: 0.011 2025-01-31 09:43:43,916 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:43:43,953 DEBUG chr5: Signal quantile: 0.988. signal threshold: 14. Best RMSEA: 0.010 2025-01-31 09:43:44,606 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:43:44,667 DEBUG chr4: Signal quantile: 0.988. signal threshold: 14. Best RMSEA: 0.009 2025-01-31 09:43:46,391 DEBUG chrX total SNP count: 244447 2025-01-31 09:43:46,391 DEBUG chrX length: 171031299 2025-01-31 09:43:46,391 DEBUG ----------------------------------------- 2025-01-31 09:43:46,391 INFO Processing SNPs in chrX 2025-01-31 09:43:46,773 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32767), (32767, 32769), (32769, 32827), (32827, 174512), (174512, 174513), (174513, 244447)] 2025-01-31 09:43:46,868 DEBUG chr3 total SNP count: 268229 2025-01-31 09:43:46,869 DEBUG chr3 length: 160039680 2025-01-31 09:43:46,869 DEBUG ----------------------------------------- 2025-01-31 09:43:46,869 INFO Processing SNPs in chr3 2025-01-31 09:43:46,886 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:47,139 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 268229)] 2025-01-31 09:43:47,329 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:48,566 DEBUG chr5 total SNP count: 256489 2025-01-31 09:43:48,566 DEBUG chr5 length: 151834684 2025-01-31 09:43:48,566 DEBUG ----------------------------------------- 2025-01-31 09:43:48,566 INFO Processing SNPs in chr5 2025-01-31 09:43:48,819 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256489)] 2025-01-31 09:43:48,997 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:49,284 DEBUG chr4 total SNP count: 258939 2025-01-31 09:43:49,284 DEBUG chr4 length: 156508116 2025-01-31 09:43:49,284 DEBUG ----------------------------------------- 2025-01-31 09:43:49,284 INFO Processing SNPs in chr4 2025-01-31 09:43:49,586 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:43:49,628 DEBUG chr1: Signal quantile: 0.990. signal threshold: 14. Best RMSEA: 0.011 2025-01-31 09:43:49,709 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 65221), (65221, 258939)] 2025-01-31 09:43:49,842 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:50,936 DEBUG Segmenting atomic regions: 2025-01-31 09:43:51,043 DEBUG Processing 1/108 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:51,827 DEBUG Processing 2/108 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,055 DEBUG Processing 3/108 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,282 DEBUG Processing 4/108 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,515 DEBUG Processing 5/108 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,741 DEBUG Processing 6/108 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:52,966 DEBUG Processing 7/108 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,191 DEBUG Processing 8/108 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,409 DEBUG chr1 total SNP count: 338970 2025-01-31 09:43:53,409 DEBUG chr1 length: 195471971 2025-01-31 09:43:53,409 DEBUG ----------------------------------------- 2025-01-31 09:43:53,409 INFO Processing SNPs in chr1 2025-01-31 09:43:53,417 DEBUG Processing 9/108 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,640 DEBUG Processing 10/108 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,752 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 338970)] 2025-01-31 09:43:53,872 DEBUG Processing 11/108 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:53,992 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:54,115 DEBUG Processing 12/108 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:54,361 DEBUG Processing 13/108 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:54,617 DEBUG Processing 14/108 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:54,880 DEBUG Processing 15/108 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,131 DEBUG Processing 16/108 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,381 DEBUG Processing 17/108 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,634 DEBUG Processing 18/108 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:55,865 DEBUG Processing 19/108 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,087 DEBUG Processing 20/108 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,306 DEBUG Processing 21/108 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,540 DEBUG Processing 22/108 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:56,784 DEBUG Processing 23/108 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,016 DEBUG Processing 24/108 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,239 DEBUG Processing 25/108 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,461 DEBUG Processing 26/108 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,680 DEBUG Processing 27/108 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:57,906 DEBUG Processing 28/108 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,009 DEBUG Segmenting atomic regions: 2025-01-31 09:43:58,135 DEBUG Processing 1/216 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:58,138 DEBUG Processing 29/108 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,372 DEBUG Processing 30/108 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,643 DEBUG Processing 31/108 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,889 DEBUG Processing 32/108 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:58,920 DEBUG Processing 2/216 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,174 DEBUG Processing 33/108 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:59,250 DEBUG Processing 3/216 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,480 DEBUG Processing 34/108 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:59,605 DEBUG Processing 4/216 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:59,757 DEBUG Processing 35/108 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:59,972 DEBUG Processing 5/216 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,072 DEBUG Processing 36/108 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,299 DEBUG Processing 6/216 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,409 DEBUG Processing 37/108 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,611 DEBUG Processing 7/216 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:00,773 DEBUG Processing 38/108 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:00,913 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:44:00,915 DEBUG chr2: Signal quantile: 0.987. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 09:44:00,937 DEBUG Processing 8/216 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,059 DEBUG Processing 39/108 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,175 DEBUG Processing 9/216 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,329 DEBUG Processing 40/108 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,409 DEBUG Processing 10/216 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,580 DEBUG Processing 41/108 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,653 DEBUG Processing 11/216 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:01,821 DEBUG Processing 42/108 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:01,885 DEBUG Processing 12/216 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,059 DEBUG Processing 43/108 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,113 DEBUG Processing 13/216 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,311 DEBUG Processing 44/108 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,349 DEBUG Processing 14/216 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,613 DEBUG Processing 45/108 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:02,620 DEBUG Processing 15/216 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,918 DEBUG Processing 16/216 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:02,944 DEBUG Processing 46/108 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,154 DEBUG Processing 17/216 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,190 DEBUG Processing 47/108 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,396 DEBUG Processing 18/216 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,416 DEBUG Processing 48/108 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,631 DEBUG Processing 49/108 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,643 DEBUG Processing 19/216 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:03,848 DEBUG Processing 50/108 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:03,868 DEBUG Processing 20/216 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,071 DEBUG Processing 51/108 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,096 DEBUG Processing 21/216 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,294 DEBUG Processing 52/108 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,327 DEBUG Processing 22/216 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,374 DEBUG chr2 total SNP count: 313460 2025-01-31 09:44:04,374 DEBUG chr2 length: 182113224 2025-01-31 09:44:04,374 DEBUG ----------------------------------------- 2025-01-31 09:44:04,374 INFO Processing SNPs in chr2 2025-01-31 09:44:04,522 DEBUG Processing 53/108 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,557 DEBUG Processing 23/216 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,749 DEBUG Processing 54/108 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:04,789 DEBUG Processing 24/216 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:04,874 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 305619), (305619, 313460)] 2025-01-31 09:44:04,980 DEBUG Processing 55/108 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,023 DEBUG Processing 25/216 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,094 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:05,203 DEBUG Processing 56/108 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,258 DEBUG Processing 26/216 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,424 DEBUG Processing 57/108 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,489 DEBUG Processing 27/216 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,642 DEBUG Processing 58/108 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,713 DEBUG Processing 28/216 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:05,862 DEBUG Processing 59/108 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:05,939 DEBUG Processing 29/216 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,082 DEBUG Processing 60/108 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,164 DEBUG Processing 30/216 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,302 DEBUG Processing 61/108 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,416 DEBUG Processing 31/216 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,530 DEBUG Processing 62/108 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,662 DEBUG Processing 32/216 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,767 DEBUG Processing 63/108 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:06,891 DEBUG Processing 33/216 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:06,989 DEBUG Processing 64/108 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,119 DEBUG Processing 34/216 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,211 DEBUG Processing 65/108 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,348 DEBUG Processing 35/216 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,434 DEBUG Processing 66/108 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,578 DEBUG Processing 36/216 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,667 DEBUG Processing 67/108 atomic regions from SNP 19866 to 20466 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:07,808 DEBUG Processing 37/216 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:07,890 DEBUG Processing 68/108 atomic regions from SNP 20166 to 20766 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,035 DEBUG Processing 38/216 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,113 DEBUG Processing 69/108 atomic regions from SNP 20466 to 21066 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,274 DEBUG Processing 39/216 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,334 DEBUG Processing 70/108 atomic regions from SNP 20766 to 21366 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,510 DEBUG Processing 40/216 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,559 DEBUG Processing 71/108 atomic regions from SNP 21066 to 21666 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,746 DEBUG Processing 41/216 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:08,786 DEBUG Processing 72/108 atomic regions from SNP 21366 to 21966 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:08,975 DEBUG Processing 42/216 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,039 DEBUG Processing 73/108 atomic regions from SNP 21666 to 22266 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,202 DEBUG Processing 43/216 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,293 DEBUG Processing 74/108 atomic regions from SNP 21966 to 22566 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,436 DEBUG Processing 44/216 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,524 DEBUG Processing 75/108 atomic regions from SNP 22266 to 22866 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,685 DEBUG Processing 45/216 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,752 DEBUG Processing 76/108 atomic regions from SNP 22566 to 23166 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:09,935 DEBUG Processing 46/216 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:09,980 DEBUG Processing 77/108 atomic regions from SNP 22866 to 23466 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,168 DEBUG Processing 47/216 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,208 DEBUG Processing 78/108 atomic regions from SNP 23166 to 23766 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,403 DEBUG Processing 48/216 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,444 DEBUG Processing 79/108 atomic regions from SNP 23466 to 24066 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,636 DEBUG Processing 49/216 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,671 DEBUG Processing 80/108 atomic regions from SNP 23766 to 24366 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:10,866 DEBUG Processing 50/216 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:10,900 DEBUG Processing 81/108 atomic regions from SNP 24066 to 24666 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,093 DEBUG Processing 51/216 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,125 DEBUG Processing 82/108 atomic regions from SNP 24366 to 24966 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,320 DEBUG Processing 52/216 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,353 DEBUG Processing 83/108 atomic regions from SNP 24666 to 25266 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,549 DEBUG Processing 53/216 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,582 DEBUG Processing 84/108 atomic regions from SNP 24966 to 25566 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:11,782 DEBUG Processing 54/216 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:11,811 DEBUG Processing 85/108 atomic regions from SNP 25266 to 25866 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,009 DEBUG Processing 55/216 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,050 DEBUG Processing 86/108 atomic regions from SNP 25566 to 26166 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,237 DEBUG Processing 56/216 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,302 DEBUG Processing 87/108 atomic regions from SNP 25866 to 26466 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,462 DEBUG Processing 57/216 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,545 DEBUG Processing 88/108 atomic regions from SNP 26166 to 26766 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,687 DEBUG Processing 58/216 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,779 DEBUG Processing 89/108 atomic regions from SNP 26466 to 27066 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:12,913 DEBUG Processing 59/216 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:12,994 DEBUG Processing 90/108 atomic regions from SNP 26766 to 27366 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,149 DEBUG Processing 60/216 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,212 DEBUG Processing 91/108 atomic regions from SNP 27066 to 27666 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,399 DEBUG Processing 61/216 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,433 DEBUG Processing 92/108 atomic regions from SNP 27366 to 27966 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,626 DEBUG Processing 62/216 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,657 DEBUG Processing 93/108 atomic regions from SNP 27666 to 28266 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:13,849 DEBUG Processing 63/216 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:13,880 DEBUG Processing 94/108 atomic regions from SNP 27966 to 28566 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,066 DEBUG Processing 64/216 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,100 DEBUG Processing 95/108 atomic regions from SNP 28266 to 28866 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,294 DEBUG Processing 65/216 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,333 DEBUG Processing 96/108 atomic regions from SNP 28566 to 29166 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,586 DEBUG Processing 66/216 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:14,593 DEBUG Processing 97/108 atomic regions from SNP 28866 to 29466 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,851 DEBUG Processing 98/108 atomic regions from SNP 29166 to 29766 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:14,865 DEBUG Processing 67/216 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,076 DEBUG Processing 99/108 atomic regions from SNP 29466 to 30066 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,106 DEBUG Processing 68/216 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,287 DEBUG Processing 100/108 atomic regions from SNP 29766 to 30366 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,338 DEBUG Processing 69/216 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,505 DEBUG Processing 101/108 atomic regions from SNP 30066 to 30666 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,565 DEBUG Processing 70/216 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,721 DEBUG Processing 102/108 atomic regions from SNP 30366 to 30966 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:15,789 DEBUG Processing 71/216 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:15,946 DEBUG Processing 103/108 atomic regions from SNP 30666 to 31266 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,014 DEBUG Processing 72/216 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,174 DEBUG Processing 104/108 atomic regions from SNP 30966 to 31566 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,241 DEBUG Processing 73/216 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,424 DEBUG Processing 105/108 atomic regions from SNP 31266 to 31866 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,501 DEBUG Processing 74/216 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,656 DEBUG Processing 106/108 atomic regions from SNP 31566 to 32166 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,730 DEBUG Processing 75/216 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:16,887 DEBUG Processing 107/108 atomic regions from SNP 31866 to 32466 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:16,973 DEBUG Processing 76/216 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,112 DEBUG Processing 108/108 atomic regions from SNP 32166 to 32766 for chrX (subchromosome 1 of 6). 2025-01-31 09:44:17,203 DEBUG Processing 77/216 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,224 DEBUG Unique SNPs positions in subchromosome 1: 32767 2025-01-31 09:44:17,313 DEBUG Subchromosome time: 30.427286240970716, subchromosome SNPs: 32767 2025-01-31 09:44:17,350 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:17,430 DEBUG Processing 78/216 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,653 DEBUG Processing 79/216 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:17,879 DEBUG Processing 80/216 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,103 DEBUG Processing 81/216 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,337 DEBUG Processing 82/216 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,567 DEBUG Processing 83/216 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:18,801 DEBUG Processing 84/216 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,030 DEBUG Processing 85/216 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,255 DEBUG Processing 86/216 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,477 DEBUG Processing 87/216 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,697 DEBUG Processing 88/216 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,926 DEBUG Processing 89/216 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:19,993 DEBUG Segmenting atomic regions: 2025-01-31 09:44:20,114 DEBUG Processing 1/893 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,163 DEBUG Processing 90/216 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,326 DEBUG Segmenting atomic regions: 2025-01-31 09:44:20,400 DEBUG Processing 91/216 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,442 DEBUG Processing 1/853 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,633 DEBUG Processing 92/216 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:20,865 DEBUG Processing 93/216 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,095 DEBUG Processing 94/216 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,105 DEBUG Processing 2/893 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,152 DEBUG Processing 2/853 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,323 DEBUG Processing 95/216 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,335 DEBUG Processing 3/893 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,383 DEBUG Processing 3/853 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,548 DEBUG Processing 96/216 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,560 DEBUG Processing 4/893 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,617 DEBUG Processing 4/853 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,772 DEBUG Processing 97/216 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:21,785 DEBUG Processing 5/893 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,845 DEBUG Processing 5/853 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,000 DEBUG Processing 98/216 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,012 DEBUG Processing 6/893 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,070 DEBUG Processing 6/853 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,231 DEBUG Processing 99/216 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,240 DEBUG Processing 7/893 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,293 DEBUG Processing 7/853 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,462 DEBUG Processing 100/216 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,474 DEBUG Processing 8/893 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,518 DEBUG Processing 8/853 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,691 DEBUG Processing 101/216 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,711 DEBUG Processing 9/893 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,750 DEBUG Processing 9/853 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,917 DEBUG Processing 102/216 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:22,947 DEBUG Processing 10/893 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,977 DEBUG Processing 10/853 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,142 DEBUG Processing 103/216 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,181 DEBUG Processing 11/893 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,211 DEBUG Processing 11/853 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,367 DEBUG Processing 104/216 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,413 DEBUG Processing 12/893 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,440 DEBUG Processing 12/853 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,606 DEBUG Processing 105/216 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,653 DEBUG Processing 13/893 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,673 DEBUG Processing 13/853 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,835 DEBUG Processing 106/216 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:23,890 DEBUG Processing 14/893 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,908 DEBUG Processing 14/853 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,066 DEBUG Processing 107/216 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,129 DEBUG Processing 15/893 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,144 DEBUG Processing 15/853 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,297 DEBUG Processing 108/216 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,365 DEBUG Processing 16/893 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,379 DEBUG Processing 16/853 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,531 DEBUG Processing 109/216 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,602 DEBUG Processing 17/893 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,610 DEBUG Processing 17/853 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,763 DEBUG Processing 110/216 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:24,840 DEBUG Processing 18/893 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,845 DEBUG Processing 18/853 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,028 DEBUG Processing 111/216 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,089 DEBUG Processing 19/893 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,102 DEBUG Processing 19/853 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,300 DEBUG Processing 112/216 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,373 DEBUG Processing 20/893 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,387 DEBUG Processing 20/853 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,592 DEBUG Processing 113/216 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,667 DEBUG Processing 21/893 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,674 DEBUG Processing 21/853 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,920 DEBUG Processing 114/216 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:25,948 DEBUG Processing 22/893 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,981 DEBUG Processing 22/853 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,172 DEBUG Processing 115/216 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,190 DEBUG Processing 23/893 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,209 DEBUG Processing 23/853 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,418 DEBUG Processing 116/216 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,432 DEBUG Processing 24/893 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,444 DEBUG Processing 24/853 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,662 DEBUG Processing 117/216 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,681 DEBUG Processing 25/893 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,686 DEBUG Processing 25/853 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,903 DEBUG Processing 118/216 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:26,933 DEBUG Processing 26/893 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,933 DEBUG Processing 26/853 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,174 DEBUG Processing 119/216 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,201 DEBUG Processing 27/893 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,201 DEBUG Processing 27/853 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,500 DEBUG Processing 120/216 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,526 DEBUG Processing 28/893 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,528 DEBUG Processing 28/853 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,733 DEBUG Processing 121/216 atomic regions from SNP 36120 to 36720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:27,769 DEBUG Processing 29/853 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,772 DEBUG Processing 29/893 atomic regions from SNP 8428 to 9028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,963 DEBUG Processing 122/216 atomic regions from SNP 36420 to 37020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,003 DEBUG Processing 30/853 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,009 DEBUG Processing 30/893 atomic regions from SNP 8728 to 9328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,201 DEBUG Processing 123/216 atomic regions from SNP 36720 to 37320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,237 DEBUG Processing 31/853 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,245 DEBUG Processing 31/893 atomic regions from SNP 9028 to 9628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,454 DEBUG Processing 124/216 atomic regions from SNP 37020 to 37620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,479 DEBUG Processing 32/853 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,489 DEBUG Processing 32/893 atomic regions from SNP 9328 to 9928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,695 DEBUG Processing 125/216 atomic regions from SNP 37320 to 37920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,717 DEBUG Processing 33/853 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,757 DEBUG Processing 33/893 atomic regions from SNP 9628 to 10228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,938 DEBUG Processing 126/216 atomic regions from SNP 37620 to 38220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:28,960 DEBUG Processing 34/853 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,003 DEBUG Processing 34/893 atomic regions from SNP 9928 to 10528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,172 DEBUG Processing 127/216 atomic regions from SNP 37920 to 38520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,192 DEBUG Processing 35/853 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,239 DEBUG Processing 35/893 atomic regions from SNP 10228 to 10828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,410 DEBUG Processing 128/216 atomic regions from SNP 38220 to 38820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,423 DEBUG Processing 36/853 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,473 DEBUG Processing 36/893 atomic regions from SNP 10528 to 11128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,651 DEBUG Processing 129/216 atomic regions from SNP 38520 to 39120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,653 DEBUG Processing 37/853 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,702 DEBUG Processing 37/893 atomic regions from SNP 10828 to 11428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,880 DEBUG Processing 38/853 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,891 DEBUG Processing 130/216 atomic regions from SNP 38820 to 39420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:29,931 DEBUG Processing 38/893 atomic regions from SNP 11128 to 11728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,111 DEBUG Processing 39/853 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,135 DEBUG Processing 131/216 atomic regions from SNP 39120 to 39720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,164 DEBUG Processing 39/893 atomic regions from SNP 11428 to 12028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,342 DEBUG Processing 40/853 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,377 DEBUG Processing 132/216 atomic regions from SNP 39420 to 40020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,416 DEBUG Processing 40/893 atomic regions from SNP 11728 to 12328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,567 DEBUG Processing 41/853 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,615 DEBUG Processing 133/216 atomic regions from SNP 39720 to 40320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,658 DEBUG Processing 41/893 atomic regions from SNP 12028 to 12628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,795 DEBUG Processing 42/853 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,852 DEBUG Processing 134/216 atomic regions from SNP 40020 to 40620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:30,886 DEBUG Processing 42/893 atomic regions from SNP 12328 to 12928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,022 DEBUG Processing 43/853 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,090 DEBUG Processing 135/216 atomic regions from SNP 40320 to 40920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,115 DEBUG Processing 43/893 atomic regions from SNP 12628 to 13228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,252 DEBUG Processing 44/853 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,323 DEBUG Processing 136/216 atomic regions from SNP 40620 to 41220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,340 DEBUG Processing 44/893 atomic regions from SNP 12928 to 13528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,483 DEBUG Processing 45/853 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,560 DEBUG Processing 137/216 atomic regions from SNP 40920 to 41520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,571 DEBUG Processing 45/893 atomic regions from SNP 13228 to 13828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,706 DEBUG Processing 46/853 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,796 DEBUG Processing 138/216 atomic regions from SNP 41220 to 41820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:31,802 DEBUG Processing 46/893 atomic regions from SNP 13528 to 14128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,928 DEBUG Processing 47/853 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,033 DEBUG Processing 139/216 atomic regions from SNP 41520 to 42120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,037 DEBUG Processing 47/893 atomic regions from SNP 13828 to 14428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,152 DEBUG Processing 48/853 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,270 DEBUG Processing 140/216 atomic regions from SNP 41820 to 42420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,272 DEBUG Processing 48/893 atomic regions from SNP 14128 to 14728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,376 DEBUG Processing 49/853 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,505 DEBUG Processing 49/893 atomic regions from SNP 14428 to 15028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,508 DEBUG Processing 141/216 atomic regions from SNP 42120 to 42720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,598 DEBUG Processing 50/853 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,737 DEBUG Processing 50/893 atomic regions from SNP 14728 to 15328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,745 DEBUG Processing 142/216 atomic regions from SNP 42420 to 43020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:32,820 DEBUG Processing 51/853 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,969 DEBUG Processing 51/893 atomic regions from SNP 15028 to 15628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,978 DEBUG Processing 143/216 atomic regions from SNP 42720 to 43320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,046 DEBUG Processing 52/853 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,200 DEBUG Processing 52/893 atomic regions from SNP 15328 to 15928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,210 DEBUG Processing 144/216 atomic regions from SNP 43020 to 43620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,270 DEBUG Processing 53/853 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,434 DEBUG Processing 53/893 atomic regions from SNP 15628 to 16228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,440 DEBUG Processing 145/216 atomic regions from SNP 43320 to 43920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,497 DEBUG Processing 54/853 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,673 DEBUG Processing 54/893 atomic regions from SNP 15928 to 16528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,673 DEBUG Processing 146/216 atomic regions from SNP 43620 to 44220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,727 DEBUG Processing 55/853 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,908 DEBUG Processing 147/216 atomic regions from SNP 43920 to 44520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:33,914 DEBUG Processing 55/893 atomic regions from SNP 16228 to 16828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,961 DEBUG Processing 56/853 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,149 DEBUG Processing 148/216 atomic regions from SNP 44220 to 44820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,151 DEBUG Processing 56/893 atomic regions from SNP 16528 to 17128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,193 DEBUG Processing 57/853 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,387 DEBUG Processing 149/216 atomic regions from SNP 44520 to 45120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,388 DEBUG Processing 57/893 atomic regions from SNP 16828 to 17428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,429 DEBUG Processing 58/853 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,626 DEBUG Processing 58/893 atomic regions from SNP 17128 to 17728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,629 DEBUG Processing 150/216 atomic regions from SNP 44820 to 45420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,659 DEBUG Processing 59/853 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,783 DEBUG Segmenting atomic regions: 2025-01-31 09:44:34,863 DEBUG Processing 59/893 atomic regions from SNP 17428 to 18028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,872 DEBUG Processing 151/216 atomic regions from SNP 45120 to 45720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:34,889 DEBUG Processing 1/471 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:34,892 DEBUG Processing 60/853 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,107 DEBUG Processing 60/893 atomic regions from SNP 17728 to 18328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,107 DEBUG Processing 152/216 atomic regions from SNP 45420 to 46020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,127 DEBUG Processing 2/471 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,133 DEBUG Processing 61/853 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,334 DEBUG Segmenting atomic regions: 2025-01-31 09:44:35,344 DEBUG Processing 153/216 atomic regions from SNP 45720 to 46320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,345 DEBUG Processing 61/893 atomic regions from SNP 18028 to 18628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,366 DEBUG Processing 3/471 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,374 DEBUG Processing 62/853 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,481 DEBUG Processing 1/1128 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,578 DEBUG Processing 154/216 atomic regions from SNP 46020 to 46620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,584 DEBUG Processing 62/893 atomic regions from SNP 18328 to 18928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,611 DEBUG Processing 4/471 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,617 DEBUG Processing 63/853 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,811 DEBUG Processing 155/216 atomic regions from SNP 46320 to 46920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:35,816 DEBUG Processing 63/893 atomic regions from SNP 18628 to 19228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,844 DEBUG Processing 5/471 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:35,856 DEBUG Processing 64/853 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,045 DEBUG Processing 156/216 atomic regions from SNP 46620 to 47220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,049 DEBUG Processing 64/893 atomic regions from SNP 18928 to 19528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,073 DEBUG Processing 6/471 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,092 DEBUG Processing 65/853 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,263 DEBUG Processing 2/1128 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,280 DEBUG Processing 157/216 atomic regions from SNP 46920 to 47520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,286 DEBUG Processing 65/893 atomic regions from SNP 19228 to 19828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,300 DEBUG Processing 7/471 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,323 DEBUG Processing 66/853 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,523 DEBUG Processing 158/216 atomic regions from SNP 47220 to 47820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,545 DEBUG Processing 8/471 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,545 DEBUG Processing 3/1128 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,549 DEBUG Processing 66/893 atomic regions from SNP 19528 to 20128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,556 DEBUG Processing 67/853 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,759 DEBUG Processing 159/216 atomic regions from SNP 47520 to 48120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:36,796 DEBUG Processing 68/853 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,798 DEBUG Processing 67/893 atomic regions from SNP 19828 to 20428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,803 DEBUG Processing 9/471 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:36,832 DEBUG Processing 4/1128 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,998 DEBUG Processing 160/216 atomic regions from SNP 47820 to 48420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,032 DEBUG Processing 69/853 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,037 DEBUG Processing 68/893 atomic regions from SNP 20128 to 20728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,070 DEBUG Processing 10/471 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,117 DEBUG Processing 5/1128 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,237 DEBUG Processing 161/216 atomic regions from SNP 48120 to 48720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,268 DEBUG Processing 70/853 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,275 DEBUG Processing 69/893 atomic regions from SNP 20428 to 21028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,328 DEBUG Processing 11/471 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,395 DEBUG Processing 6/1128 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,476 DEBUG Processing 162/216 atomic regions from SNP 48420 to 49020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,509 DEBUG Processing 71/853 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,518 DEBUG Processing 70/893 atomic regions from SNP 20728 to 21328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,587 DEBUG Processing 12/471 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,668 DEBUG Processing 7/1128 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,716 DEBUG Processing 163/216 atomic regions from SNP 48720 to 49320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,742 DEBUG Processing 72/853 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,758 DEBUG Processing 71/893 atomic regions from SNP 21028 to 21628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,837 DEBUG Processing 13/471 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:37,936 DEBUG Processing 8/1128 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,955 DEBUG Processing 164/216 atomic regions from SNP 49020 to 49620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:37,982 DEBUG Processing 73/853 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,000 DEBUG Processing 72/893 atomic regions from SNP 21328 to 21928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,075 DEBUG Processing 14/471 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,189 DEBUG Processing 165/216 atomic regions from SNP 49320 to 49920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,206 DEBUG Processing 9/1128 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,221 DEBUG Processing 74/853 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,247 DEBUG Processing 73/893 atomic regions from SNP 21628 to 22228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,304 DEBUG Processing 15/471 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,421 DEBUG Processing 166/216 atomic regions from SNP 49620 to 50220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,462 DEBUG Processing 75/853 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,481 DEBUG Processing 10/1128 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,498 DEBUG Processing 74/893 atomic regions from SNP 21928 to 22528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,542 DEBUG Processing 16/471 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,658 DEBUG Processing 167/216 atomic regions from SNP 49920 to 50520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,694 DEBUG Processing 76/853 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,742 DEBUG Processing 75/893 atomic regions from SNP 22228 to 22828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,770 DEBUG Processing 11/1128 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,790 DEBUG Processing 17/471 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:38,912 DEBUG Processing 168/216 atomic regions from SNP 50220 to 50820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:38,919 DEBUG Processing 77/853 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,983 DEBUG Processing 76/893 atomic regions from SNP 22528 to 23128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,043 DEBUG Processing 18/471 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,052 DEBUG Processing 12/1128 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,139 DEBUG Processing 78/853 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,168 DEBUG Processing 169/216 atomic regions from SNP 50520 to 51120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,220 DEBUG Processing 77/893 atomic regions from SNP 22828 to 23428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,275 DEBUG Processing 19/471 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,331 DEBUG Processing 13/1128 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,365 DEBUG Processing 79/853 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,424 DEBUG Processing 170/216 atomic regions from SNP 50820 to 51420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,453 DEBUG Processing 78/893 atomic regions from SNP 23128 to 23728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,501 DEBUG Processing 20/471 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,599 DEBUG Processing 80/853 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,604 DEBUG Processing 14/1128 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,664 DEBUG Processing 171/216 atomic regions from SNP 51120 to 51720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,687 DEBUG Processing 79/893 atomic regions from SNP 23428 to 24028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,724 DEBUG Processing 21/471 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:39,834 DEBUG Processing 81/853 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,883 DEBUG Processing 15/1128 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,907 DEBUG Processing 172/216 atomic regions from SNP 51420 to 52020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:39,922 DEBUG Processing 80/893 atomic regions from SNP 23728 to 24328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,947 DEBUG Processing 22/471 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,065 DEBUG Processing 82/853 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,154 DEBUG Processing 173/216 atomic regions from SNP 51720 to 52320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,163 DEBUG Processing 16/1128 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,164 DEBUG Processing 81/893 atomic regions from SNP 24028 to 24628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,179 DEBUG Processing 23/471 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,290 DEBUG Processing 83/853 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,399 DEBUG Processing 174/216 atomic regions from SNP 52020 to 52620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,401 DEBUG Processing 82/893 atomic regions from SNP 24328 to 24928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,414 DEBUG Processing 24/471 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,438 DEBUG Processing 17/1128 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,520 DEBUG Processing 84/853 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,633 DEBUG Processing 83/893 atomic regions from SNP 24628 to 25228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,640 DEBUG Processing 25/471 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,644 DEBUG Processing 175/216 atomic regions from SNP 52320 to 52920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,708 DEBUG Processing 18/1128 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,752 DEBUG Processing 85/853 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,865 DEBUG Processing 84/893 atomic regions from SNP 24928 to 25528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,866 DEBUG Processing 26/471 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:40,891 DEBUG Processing 176/216 atomic regions from SNP 52620 to 53220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:40,980 DEBUG Processing 19/1128 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,983 DEBUG Processing 86/853 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,091 DEBUG Processing 27/471 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,096 DEBUG Processing 85/893 atomic regions from SNP 25228 to 25828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,140 DEBUG Processing 177/216 atomic regions from SNP 52920 to 53520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,213 DEBUG Processing 87/853 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,250 DEBUG Processing 20/1128 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,320 DEBUG Processing 28/471 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,332 DEBUG Processing 86/893 atomic regions from SNP 25528 to 26128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,389 DEBUG Processing 178/216 atomic regions from SNP 53220 to 53820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,440 DEBUG Processing 88/853 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,525 DEBUG Processing 21/1128 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,551 DEBUG Processing 29/471 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,567 DEBUG Processing 87/893 atomic regions from SNP 25828 to 26428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,645 DEBUG Processing 179/216 atomic regions from SNP 53520 to 54120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,669 DEBUG Processing 89/853 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,788 DEBUG Processing 30/471 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:41,796 DEBUG Processing 22/1128 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,831 DEBUG Processing 88/893 atomic regions from SNP 26128 to 26728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,885 DEBUG Processing 180/216 atomic regions from SNP 53820 to 54420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:41,898 DEBUG Processing 90/853 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,011 DEBUG Processing 31/471 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,069 DEBUG Processing 23/1128 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,087 DEBUG Processing 89/893 atomic regions from SNP 26428 to 27028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,126 DEBUG Processing 181/216 atomic regions from SNP 54120 to 54720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,137 DEBUG Processing 91/853 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,234 DEBUG Processing 32/471 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,341 DEBUG Processing 90/893 atomic regions from SNP 26728 to 27328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,346 DEBUG Processing 24/1128 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,367 DEBUG Processing 182/216 atomic regions from SNP 54420 to 55020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,402 DEBUG Processing 92/853 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,453 DEBUG Processing 33/471 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,609 DEBUG Processing 91/893 atomic regions from SNP 27028 to 27628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,613 DEBUG Processing 183/216 atomic regions from SNP 54720 to 55320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,625 DEBUG Processing 25/1128 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,655 DEBUG Processing 93/853 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,680 DEBUG Processing 34/471 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:42,850 DEBUG Processing 92/893 atomic regions from SNP 27328 to 27928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,859 DEBUG Processing 184/216 atomic regions from SNP 55020 to 55620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:42,903 DEBUG Processing 94/853 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,913 DEBUG Processing 26/1128 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,917 DEBUG Processing 35/471 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,053 DEBUG Segmenting atomic regions: 2025-01-31 09:44:43,088 DEBUG Processing 93/893 atomic regions from SNP 27628 to 28228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,106 DEBUG Processing 185/216 atomic regions from SNP 55320 to 55920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,150 DEBUG Processing 95/853 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,170 DEBUG Processing 36/471 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,196 DEBUG Processing 1/1017 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,203 DEBUG Processing 27/1128 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,319 DEBUG Processing 94/893 atomic regions from SNP 27928 to 28528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,351 DEBUG Processing 186/216 atomic regions from SNP 55620 to 56220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,393 DEBUG Processing 96/853 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,423 DEBUG Processing 37/471 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,489 DEBUG Processing 28/1128 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,547 DEBUG Processing 95/893 atomic regions from SNP 28228 to 28828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,586 DEBUG Processing 187/216 atomic regions from SNP 55920 to 56520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,643 DEBUG Processing 97/853 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,653 DEBUG Processing 38/471 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:43,766 DEBUG Processing 29/1128 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,784 DEBUG Processing 96/893 atomic regions from SNP 28528 to 29128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,817 DEBUG Processing 188/216 atomic regions from SNP 56220 to 56820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:43,875 DEBUG Processing 98/853 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,879 DEBUG Processing 39/471 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,023 DEBUG Processing 97/893 atomic regions from SNP 28828 to 29428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,044 DEBUG Processing 30/1128 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,049 DEBUG Processing 189/216 atomic regions from SNP 56520 to 57120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,062 DEBUG Processing 2/1017 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,103 DEBUG Processing 40/471 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,103 DEBUG Processing 99/853 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,265 DEBUG Processing 98/893 atomic regions from SNP 29128 to 29728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,294 DEBUG Processing 190/216 atomic regions from SNP 56820 to 57420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,323 DEBUG Processing 31/1128 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,331 DEBUG Processing 41/471 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,344 DEBUG Processing 100/853 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,348 DEBUG Processing 3/1017 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,505 DEBUG Processing 99/893 atomic regions from SNP 29428 to 30028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,542 DEBUG Processing 191/216 atomic regions from SNP 57120 to 57720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,563 DEBUG Processing 42/471 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,590 DEBUG Processing 101/853 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,602 DEBUG Processing 32/1128 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,616 DEBUG Processing 4/1017 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,746 DEBUG Processing 100/893 atomic regions from SNP 29728 to 30328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,793 DEBUG Processing 192/216 atomic regions from SNP 57420 to 58020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:44,794 DEBUG Processing 43/471 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:44,824 DEBUG Processing 102/853 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,877 DEBUG Processing 33/1128 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,887 DEBUG Processing 5/1017 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,984 DEBUG Processing 101/893 atomic regions from SNP 30028 to 30628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,028 DEBUG Processing 44/471 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,041 DEBUG Processing 193/216 atomic regions from SNP 57720 to 58320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,061 DEBUG Processing 103/853 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,152 DEBUG Processing 34/1128 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,163 DEBUG Processing 6/1017 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,217 DEBUG Processing 102/893 atomic regions from SNP 30328 to 30928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,259 DEBUG Processing 45/471 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,281 DEBUG Processing 194/216 atomic regions from SNP 58020 to 58620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,295 DEBUG Processing 104/853 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,428 DEBUG Processing 35/1128 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,437 DEBUG Processing 7/1017 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,452 DEBUG Processing 103/893 atomic regions from SNP 30628 to 31228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,490 DEBUG Processing 46/471 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,521 DEBUG Processing 195/216 atomic regions from SNP 58320 to 58920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,529 DEBUG Processing 105/853 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,697 DEBUG Processing 36/1128 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,697 DEBUG Processing 104/893 atomic regions from SNP 30928 to 31528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,714 DEBUG Processing 8/1017 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,718 DEBUG Processing 47/471 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,755 DEBUG Processing 196/216 atomic regions from SNP 58620 to 59220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:45,761 DEBUG Processing 106/853 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,932 DEBUG Processing 105/893 atomic regions from SNP 31228 to 31828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,945 DEBUG Processing 48/471 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:45,966 DEBUG Processing 37/1128 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,987 DEBUG Processing 9/1017 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,996 DEBUG Processing 197/216 atomic regions from SNP 58920 to 59520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,014 DEBUG Processing 107/853 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,167 DEBUG Processing 106/893 atomic regions from SNP 31528 to 32128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,169 DEBUG Processing 49/471 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,239 DEBUG Processing 198/216 atomic regions from SNP 59220 to 59820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,256 DEBUG Processing 38/1128 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,260 DEBUG Processing 108/853 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,263 DEBUG Processing 10/1017 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,390 DEBUG Processing 50/471 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,397 DEBUG Processing 107/893 atomic regions from SNP 31828 to 32428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,483 DEBUG Processing 199/216 atomic regions from SNP 59520 to 60120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,520 DEBUG Processing 109/853 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,532 DEBUG Processing 11/1017 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,546 DEBUG Processing 39/1128 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,612 DEBUG Processing 51/471 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,627 DEBUG Processing 108/893 atomic regions from SNP 32128 to 32728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,724 DEBUG Processing 200/216 atomic regions from SNP 59820 to 60420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:46,767 DEBUG Processing 110/853 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,813 DEBUG Processing 12/1017 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,832 DEBUG Processing 40/1128 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,844 DEBUG Processing 52/471 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:46,862 DEBUG Processing 109/893 atomic regions from SNP 32428 to 33028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,960 DEBUG Processing 201/216 atomic regions from SNP 60120 to 60720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,004 DEBUG Processing 111/853 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,080 DEBUG Processing 53/471 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,084 DEBUG Processing 13/1017 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,101 DEBUG Processing 110/893 atomic regions from SNP 32728 to 33328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,113 DEBUG Processing 41/1128 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,189 DEBUG Processing 202/216 atomic regions from SNP 60420 to 61020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,258 DEBUG Processing 112/853 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,310 DEBUG Processing 54/471 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,341 DEBUG Processing 111/893 atomic regions from SNP 33028 to 33628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,358 DEBUG Processing 14/1017 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,384 DEBUG Processing 42/1128 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,422 DEBUG Processing 203/216 atomic regions from SNP 60720 to 61320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,519 DEBUG Processing 113/853 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,536 DEBUG Processing 55/471 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,574 DEBUG Processing 112/893 atomic regions from SNP 33328 to 33928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,625 DEBUG Processing 15/1017 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,657 DEBUG Processing 43/1128 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,661 DEBUG Processing 204/216 atomic regions from SNP 61020 to 61620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,759 DEBUG Processing 56/471 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:47,780 DEBUG Processing 114/853 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,806 DEBUG Processing 113/893 atomic regions from SNP 33628 to 34228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,890 DEBUG Processing 16/1017 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,899 DEBUG Processing 205/216 atomic regions from SNP 61320 to 61920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:47,927 DEBUG Processing 44/1128 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,987 DEBUG Processing 57/471 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,034 DEBUG Processing 115/853 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,036 DEBUG Processing 114/893 atomic regions from SNP 33928 to 34528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,141 DEBUG Processing 206/216 atomic regions from SNP 61620 to 62220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,157 DEBUG Processing 17/1017 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,202 DEBUG Processing 45/1128 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,218 DEBUG Processing 58/471 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,268 DEBUG Processing 115/893 atomic regions from SNP 34228 to 34828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,292 DEBUG Processing 116/853 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,376 DEBUG Processing 207/216 atomic regions from SNP 61920 to 62520 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,437 DEBUG Processing 18/1017 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,451 DEBUG Processing 59/471 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,478 DEBUG Processing 46/1128 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,504 DEBUG Processing 116/893 atomic regions from SNP 34528 to 35128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,546 DEBUG Processing 117/853 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,626 DEBUG Processing 208/216 atomic regions from SNP 62220 to 62820 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,687 DEBUG Processing 60/471 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,737 DEBUG Processing 19/1017 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,745 DEBUG Processing 117/893 atomic regions from SNP 34828 to 35428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,754 DEBUG Processing 47/1128 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,777 DEBUG Processing 118/853 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,861 DEBUG Processing 209/216 atomic regions from SNP 62520 to 63120 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:48,918 DEBUG Processing 61/471 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:48,988 DEBUG Processing 118/893 atomic regions from SNP 35128 to 35728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,029 DEBUG Processing 48/1128 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,030 DEBUG Processing 119/853 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,036 DEBUG Processing 20/1017 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,095 DEBUG Processing 210/216 atomic regions from SNP 62820 to 63420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,145 DEBUG Processing 62/471 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,227 DEBUG Processing 119/893 atomic regions from SNP 35428 to 36028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,287 DEBUG Processing 120/853 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,299 DEBUG Processing 49/1128 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,331 DEBUG Processing 21/1017 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,347 DEBUG Processing 211/216 atomic regions from SNP 63120 to 63720 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,371 DEBUG Processing 63/471 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,464 DEBUG Processing 120/893 atomic regions from SNP 35728 to 36328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,520 DEBUG Processing 121/853 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,572 DEBUG Processing 50/1128 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,598 DEBUG Processing 64/471 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,612 DEBUG Processing 22/1017 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,624 DEBUG Processing 212/216 atomic regions from SNP 63420 to 64020 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,698 DEBUG Processing 121/893 atomic regions from SNP 36028 to 36628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,747 DEBUG Processing 122/853 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,825 DEBUG Processing 65/471 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:49,839 DEBUG Processing 51/1128 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,892 DEBUG Processing 23/1017 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,910 DEBUG Processing 213/216 atomic regions from SNP 63720 to 64320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:49,934 DEBUG Processing 122/893 atomic regions from SNP 36328 to 36928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,974 DEBUG Processing 123/853 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,042 DEBUG Processing 66/471 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,100 DEBUG Processing 52/1128 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,172 DEBUG Processing 123/893 atomic regions from SNP 36628 to 37228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,172 DEBUG Processing 24/1017 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,187 DEBUG Processing 214/216 atomic regions from SNP 64020 to 64620 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,205 DEBUG Processing 124/853 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,260 DEBUG Processing 67/471 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,361 DEBUG Processing 53/1128 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,415 DEBUG Processing 124/893 atomic regions from SNP 36928 to 37528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,442 DEBUG Processing 125/853 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,454 DEBUG Processing 25/1017 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,460 DEBUG Processing 215/216 atomic regions from SNP 64320 to 64920 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,490 DEBUG Processing 68/471 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,624 DEBUG Processing 54/1128 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,651 DEBUG Processing 125/893 atomic regions from SNP 37228 to 37828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,676 DEBUG Processing 126/853 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,725 DEBUG Processing 69/471 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:50,731 DEBUG Processing 26/1017 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,731 DEBUG Processing 216/216 atomic regions from SNP 64620 to 65220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:44:50,893 DEBUG Processing 55/1128 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,894 DEBUG Processing 126/893 atomic regions from SNP 37528 to 38128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,900 DEBUG Unique SNPs positions in subchromosome 1: 65221 2025-01-31 09:44:50,921 DEBUG Processing 127/853 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,976 DEBUG Processing 70/471 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,011 DEBUG Processing 27/1017 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,129 DEBUG Processing 127/893 atomic regions from SNP 37828 to 38428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,152 DEBUG Subchromosome time: 61.309924564906396, subchromosome SNPs: 65221 2025-01-31 09:44:51,154 DEBUG Processing 128/853 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,160 DEBUG Processing 56/1128 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,204 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:51,228 DEBUG Processing 71/471 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,287 DEBUG Processing 28/1017 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,365 DEBUG Processing 128/893 atomic regions from SNP 38128 to 38728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,387 DEBUG Processing 129/853 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,430 DEBUG Processing 57/1128 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,476 DEBUG Processing 72/471 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,561 DEBUG Processing 29/1017 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,605 DEBUG Processing 129/893 atomic regions from SNP 38428 to 39028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,622 DEBUG Processing 130/853 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,712 DEBUG Processing 58/1128 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,713 DEBUG Processing 73/471 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,828 DEBUG Processing 30/1017 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,841 DEBUG Processing 130/893 atomic regions from SNP 38728 to 39328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,856 DEBUG Processing 131/853 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,936 DEBUG Processing 74/471 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:51,989 DEBUG Processing 59/1128 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,072 DEBUG Processing 131/893 atomic regions from SNP 39028 to 39628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,085 DEBUG Processing 132/853 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,093 DEBUG Processing 31/1017 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,161 DEBUG Processing 75/471 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,262 DEBUG Processing 60/1128 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,303 DEBUG Processing 132/893 atomic regions from SNP 39328 to 39928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,314 DEBUG Processing 133/853 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,352 DEBUG Processing 32/1017 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,384 DEBUG Processing 76/471 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,526 DEBUG Processing 61/1128 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,537 DEBUG Processing 133/893 atomic regions from SNP 39628 to 40228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,566 DEBUG Processing 134/853 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,605 DEBUG Processing 77/471 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,610 DEBUG Processing 33/1017 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,768 DEBUG Processing 134/893 atomic regions from SNP 39928 to 40528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,791 DEBUG Processing 62/1128 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,796 DEBUG Processing 135/853 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,828 DEBUG Processing 78/471 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:52,865 DEBUG Processing 34/1017 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,004 DEBUG Processing 135/893 atomic regions from SNP 40228 to 40828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,026 DEBUG Processing 136/853 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,054 DEBUG Processing 79/471 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,061 DEBUG Processing 63/1128 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,124 DEBUG Processing 35/1017 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,242 DEBUG Processing 136/893 atomic regions from SNP 40528 to 41128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,261 DEBUG Processing 137/853 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,284 DEBUG Processing 80/471 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,328 DEBUG Processing 64/1128 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,389 DEBUG Processing 36/1017 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,480 DEBUG Processing 137/893 atomic regions from SNP 40828 to 41428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,497 DEBUG Processing 138/853 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,515 DEBUG Processing 81/471 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,597 DEBUG Processing 65/1128 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,664 DEBUG Processing 37/1017 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,722 DEBUG Processing 138/893 atomic regions from SNP 41128 to 41728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,735 DEBUG Processing 139/853 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,750 DEBUG Processing 82/471 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:53,864 DEBUG Processing 66/1128 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,943 DEBUG Processing 38/1017 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,967 DEBUG Processing 139/893 atomic regions from SNP 41428 to 42028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,977 DEBUG Processing 140/853 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,001 DEBUG Processing 83/471 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,128 DEBUG Processing 67/1128 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,211 DEBUG Processing 140/893 atomic regions from SNP 41728 to 42328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,213 DEBUG Processing 39/1017 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,213 DEBUG Processing 141/853 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,254 DEBUG Processing 84/471 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,388 DEBUG Processing 68/1128 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,454 DEBUG Processing 142/853 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,457 DEBUG Processing 141/893 atomic regions from SNP 42028 to 42628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,479 DEBUG Processing 40/1017 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,486 DEBUG Processing 85/471 atomic regions from SNP 25284 to 25884 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,652 DEBUG Processing 69/1128 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,696 DEBUG Processing 143/853 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,713 DEBUG Processing 142/893 atomic regions from SNP 42328 to 42928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,721 DEBUG Processing 86/471 atomic regions from SNP 25584 to 26184 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,742 DEBUG Processing 41/1017 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,921 DEBUG Processing 70/1128 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,936 DEBUG Processing 144/853 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,960 DEBUG Processing 87/471 atomic regions from SNP 25884 to 26484 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:54,968 DEBUG Processing 143/893 atomic regions from SNP 42628 to 43228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,007 DEBUG Processing 42/1017 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,172 DEBUG Processing 145/853 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,189 DEBUG Processing 71/1128 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,195 DEBUG Processing 88/471 atomic regions from SNP 26184 to 26784 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,212 DEBUG Processing 144/893 atomic regions from SNP 42928 to 43528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,276 DEBUG Processing 43/1017 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,410 DEBUG Processing 146/853 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,426 DEBUG Processing 89/471 atomic regions from SNP 26484 to 27084 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,454 DEBUG Processing 145/893 atomic regions from SNP 43228 to 43828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,460 DEBUG Processing 72/1128 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,546 DEBUG Processing 44/1017 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,653 DEBUG Processing 90/471 atomic regions from SNP 26784 to 27384 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,663 DEBUG Processing 147/853 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,696 DEBUG Processing 146/893 atomic regions from SNP 43528 to 44128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,737 DEBUG Processing 73/1128 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,817 DEBUG Processing 45/1017 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,868 DEBUG Processing 91/471 atomic regions from SNP 27084 to 27684 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:55,914 DEBUG Processing 148/853 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,928 DEBUG Processing 147/893 atomic regions from SNP 43828 to 44428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,008 DEBUG Processing 74/1128 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,087 DEBUG Processing 46/1017 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,089 DEBUG Processing 92/471 atomic regions from SNP 27384 to 27984 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,156 DEBUG Processing 148/893 atomic regions from SNP 44128 to 44728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,168 DEBUG Processing 149/853 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,279 DEBUG Processing 75/1128 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,328 DEBUG Processing 93/471 atomic regions from SNP 27684 to 28284 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,360 DEBUG Processing 47/1017 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,386 DEBUG Processing 149/893 atomic regions from SNP 44428 to 45028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,423 DEBUG Processing 150/853 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,548 DEBUG Processing 76/1128 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,554 DEBUG Processing 94/471 atomic regions from SNP 27984 to 28584 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,613 DEBUG Processing 150/893 atomic regions from SNP 44728 to 45328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,624 DEBUG Processing 48/1017 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,680 DEBUG Processing 151/853 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,783 DEBUG Processing 95/471 atomic regions from SNP 28284 to 28884 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:56,816 DEBUG Processing 77/1128 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,842 DEBUG Processing 151/893 atomic regions from SNP 45028 to 45628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,883 DEBUG Processing 49/1017 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,938 DEBUG Processing 152/853 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,009 DEBUG Processing 96/471 atomic regions from SNP 28584 to 29184 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,074 DEBUG Processing 152/893 atomic regions from SNP 45328 to 45928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,085 DEBUG Processing 78/1128 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,146 DEBUG Processing 50/1017 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,186 DEBUG Processing 153/853 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,227 DEBUG Processing 97/471 atomic regions from SNP 28884 to 29484 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,327 DEBUG Processing 153/893 atomic regions from SNP 45628 to 46228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,351 DEBUG Processing 79/1128 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,417 DEBUG Processing 154/853 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,420 DEBUG Processing 51/1017 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,464 DEBUG Processing 98/471 atomic regions from SNP 29184 to 29784 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,579 DEBUG Processing 154/893 atomic regions from SNP 45928 to 46528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,620 DEBUG Processing 80/1128 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,655 DEBUG Processing 155/853 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,686 DEBUG Processing 99/471 atomic regions from SNP 29484 to 30084 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,702 DEBUG Processing 52/1017 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,820 DEBUG Processing 155/893 atomic regions from SNP 46228 to 46828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,888 DEBUG Processing 81/1128 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,889 DEBUG Processing 156/853 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,934 DEBUG Processing 100/471 atomic regions from SNP 29784 to 30384 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:57,972 DEBUG Processing 53/1017 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,072 DEBUG Processing 156/893 atomic regions from SNP 46528 to 47128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,122 DEBUG Processing 157/853 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,157 DEBUG Processing 82/1128 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,160 DEBUG Processing 101/471 atomic regions from SNP 30084 to 30684 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,237 DEBUG Processing 54/1017 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,311 DEBUG Processing 157/893 atomic regions from SNP 46828 to 47428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,380 DEBUG Processing 158/853 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,389 DEBUG Processing 102/471 atomic regions from SNP 30384 to 30984 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,428 DEBUG Processing 83/1128 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,500 DEBUG Processing 55/1017 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,539 DEBUG Processing 158/893 atomic regions from SNP 47128 to 47728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,619 DEBUG Processing 103/471 atomic regions from SNP 30684 to 31284 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,626 DEBUG Processing 159/853 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,706 DEBUG Processing 84/1128 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,770 DEBUG Processing 159/893 atomic regions from SNP 47428 to 48028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,778 DEBUG Processing 56/1017 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,841 DEBUG Processing 104/471 atomic regions from SNP 30984 to 31584 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:58,852 DEBUG Processing 160/853 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,978 DEBUG Processing 85/1128 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,013 DEBUG Processing 160/893 atomic regions from SNP 47728 to 48328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,042 DEBUG Processing 57/1017 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,071 DEBUG Processing 105/471 atomic regions from SNP 31284 to 31884 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,091 DEBUG Processing 161/853 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,254 DEBUG Processing 86/1128 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,262 DEBUG Processing 161/893 atomic regions from SNP 48028 to 48628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,310 DEBUG Processing 106/471 atomic regions from SNP 31584 to 32184 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,325 DEBUG Processing 58/1017 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,351 DEBUG Processing 162/853 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,503 DEBUG Processing 162/893 atomic regions from SNP 48328 to 48928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,528 DEBUG Processing 87/1128 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,545 DEBUG Processing 107/471 atomic regions from SNP 31884 to 32484 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,598 DEBUG Processing 59/1017 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,622 DEBUG Processing 163/853 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,740 DEBUG Processing 163/893 atomic regions from SNP 48628 to 49228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,780 DEBUG Processing 108/471 atomic regions from SNP 32184 to 32784 for chrX (subchromosome 4 of 6). 2025-01-31 09:44:59,806 DEBUG Processing 88/1128 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,878 DEBUG Processing 60/1017 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,906 DEBUG Processing 164/853 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,032 DEBUG Processing 164/893 atomic regions from SNP 48928 to 49528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,066 DEBUG Processing 109/471 atomic regions from SNP 32484 to 33084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,113 DEBUG Processing 89/1128 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,213 DEBUG Processing 61/1017 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,227 DEBUG Processing 165/853 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,339 DEBUG Processing 165/893 atomic regions from SNP 49228 to 49828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,383 DEBUG Processing 110/471 atomic regions from SNP 32784 to 33384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,455 DEBUG Processing 90/1128 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,556 DEBUG Processing 166/853 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,570 DEBUG Processing 62/1017 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,594 DEBUG Processing 166/893 atomic regions from SNP 49528 to 50128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,628 DEBUG Processing 111/471 atomic regions from SNP 33084 to 33684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:00,739 DEBUG Processing 91/1128 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,829 DEBUG Processing 167/853 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,835 DEBUG Processing 167/893 atomic regions from SNP 49828 to 50428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,844 DEBUG Processing 63/1017 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,850 DEBUG Processing 112/471 atomic regions from SNP 33384 to 33984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,012 DEBUG Processing 92/1128 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,062 DEBUG Processing 168/893 atomic regions from SNP 50128 to 50728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,069 DEBUG Processing 113/471 atomic regions from SNP 33684 to 34284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,085 DEBUG Processing 168/853 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,108 DEBUG Processing 64/1017 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,281 DEBUG Processing 93/1128 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,289 DEBUG Processing 114/471 atomic regions from SNP 33984 to 34584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,291 DEBUG Processing 169/893 atomic regions from SNP 50428 to 51028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,325 DEBUG Processing 169/853 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,375 DEBUG Processing 65/1017 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,521 DEBUG Processing 115/471 atomic regions from SNP 34284 to 34884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,530 DEBUG Processing 170/893 atomic regions from SNP 50728 to 51328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,559 DEBUG Processing 170/853 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,559 DEBUG Processing 94/1128 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,661 DEBUG Processing 66/1017 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,757 DEBUG Processing 116/471 atomic regions from SNP 34584 to 35184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:01,771 DEBUG Processing 171/893 atomic regions from SNP 51028 to 51628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,816 DEBUG Processing 171/853 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,832 DEBUG Processing 95/1128 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,925 DEBUG Processing 67/1017 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,995 DEBUG Processing 117/471 atomic regions from SNP 34884 to 35484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,031 DEBUG Processing 172/893 atomic regions from SNP 51328 to 51928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,081 DEBUG Processing 172/853 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,110 DEBUG Processing 96/1128 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,244 DEBUG Processing 68/1017 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,266 DEBUG Processing 118/471 atomic regions from SNP 35184 to 35784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,330 DEBUG Processing 173/893 atomic regions from SNP 51628 to 52228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,379 DEBUG Processing 173/853 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,394 DEBUG Processing 97/1128 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,504 DEBUG Processing 119/471 atomic regions from SNP 35484 to 36084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,505 DEBUG Processing 69/1017 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,582 DEBUG Processing 174/893 atomic regions from SNP 51928 to 52528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,647 DEBUG Processing 174/853 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,673 DEBUG Processing 98/1128 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,735 DEBUG Processing 120/471 atomic regions from SNP 35784 to 36384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:02,768 DEBUG Processing 70/1017 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,818 DEBUG Processing 175/893 atomic regions from SNP 52228 to 52828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,902 DEBUG Processing 175/853 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,947 DEBUG Processing 99/1128 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,964 DEBUG Processing 121/471 atomic regions from SNP 36084 to 36684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,033 DEBUG Processing 71/1017 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,046 DEBUG Processing 176/893 atomic regions from SNP 52528 to 53128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,167 DEBUG Processing 176/853 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,191 DEBUG Processing 122/471 atomic regions from SNP 36384 to 36984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,219 DEBUG Processing 100/1128 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,276 DEBUG Processing 177/893 atomic regions from SNP 52828 to 53428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,291 DEBUG Processing 72/1017 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,418 DEBUG Processing 123/471 atomic regions from SNP 36684 to 37284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,419 DEBUG Processing 177/853 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,489 DEBUG Processing 101/1128 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,509 DEBUG Processing 178/893 atomic regions from SNP 53128 to 53728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,553 DEBUG Processing 73/1017 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,644 DEBUG Processing 124/471 atomic regions from SNP 36984 to 37584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,656 DEBUG Processing 178/853 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,748 DEBUG Processing 179/893 atomic regions from SNP 53428 to 54028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,761 DEBUG Processing 102/1128 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,814 DEBUG Processing 74/1017 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,867 DEBUG Processing 125/471 atomic regions from SNP 37284 to 37884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:03,898 DEBUG Processing 179/853 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,982 DEBUG Processing 180/893 atomic regions from SNP 53728 to 54328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,027 DEBUG Processing 103/1128 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,075 DEBUG Processing 75/1017 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,085 DEBUG Processing 126/471 atomic regions from SNP 37584 to 38184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,130 DEBUG Processing 180/853 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,221 DEBUG Processing 181/893 atomic regions from SNP 54028 to 54628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,296 DEBUG Processing 104/1128 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,308 DEBUG Processing 127/471 atomic regions from SNP 37884 to 38484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,334 DEBUG Processing 76/1017 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,354 DEBUG Processing 181/853 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,456 DEBUG Processing 182/893 atomic regions from SNP 54328 to 54928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,535 DEBUG Processing 128/471 atomic regions from SNP 38184 to 38784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,566 DEBUG Processing 105/1128 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,582 DEBUG Processing 182/853 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,591 DEBUG Processing 77/1017 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,693 DEBUG Processing 183/893 atomic regions from SNP 54628 to 55228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,763 DEBUG Processing 129/471 atomic regions from SNP 38484 to 39084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:04,810 DEBUG Processing 183/853 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,832 DEBUG Processing 106/1128 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,851 DEBUG Processing 78/1017 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,935 DEBUG Processing 184/893 atomic regions from SNP 54928 to 55528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,989 DEBUG Processing 130/471 atomic regions from SNP 38784 to 39384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,041 DEBUG Processing 184/853 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,099 DEBUG Processing 107/1128 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,120 DEBUG Processing 79/1017 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,177 DEBUG Processing 185/893 atomic regions from SNP 55228 to 55828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,218 DEBUG Processing 131/471 atomic regions from SNP 39084 to 39684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,299 DEBUG Processing 185/853 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,365 DEBUG Processing 108/1128 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,385 DEBUG Processing 80/1017 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,415 DEBUG Processing 186/893 atomic regions from SNP 55528 to 56128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,448 DEBUG Processing 132/471 atomic regions from SNP 39384 to 39984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,570 DEBUG Processing 186/853 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,641 DEBUG Processing 109/1128 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,648 DEBUG Processing 81/1017 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,657 DEBUG Processing 187/893 atomic regions from SNP 55828 to 56428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,681 DEBUG Processing 133/471 atomic regions from SNP 39684 to 40284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,833 DEBUG Processing 187/853 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,912 DEBUG Processing 188/893 atomic regions from SNP 56128 to 56728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,918 DEBUG Processing 134/471 atomic regions from SNP 39984 to 40584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:05,929 DEBUG Processing 82/1017 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,930 DEBUG Processing 110/1128 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,083 DEBUG Processing 188/853 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,174 DEBUG Processing 135/471 atomic regions from SNP 40284 to 40884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,181 DEBUG Processing 189/893 atomic regions from SNP 56428 to 57028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,203 DEBUG Processing 83/1017 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,215 DEBUG Processing 111/1128 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,311 DEBUG Processing 189/853 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,408 DEBUG Processing 136/471 atomic regions from SNP 40584 to 41184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,422 DEBUG Processing 190/893 atomic regions from SNP 56728 to 57328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,462 DEBUG Processing 84/1017 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,486 DEBUG Processing 112/1128 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,534 DEBUG Processing 190/853 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,639 DEBUG Processing 137/471 atomic regions from SNP 40884 to 41484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,659 DEBUG Processing 191/893 atomic regions from SNP 57028 to 57628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,713 DEBUG Processing 85/1017 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,753 DEBUG Processing 113/1128 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,756 DEBUG Processing 191/853 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,867 DEBUG Processing 138/471 atomic regions from SNP 41184 to 41784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:06,898 DEBUG Processing 192/893 atomic regions from SNP 57328 to 57928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,969 DEBUG Processing 86/1017 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,987 DEBUG Processing 192/853 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,019 DEBUG Processing 114/1128 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,094 DEBUG Processing 139/471 atomic regions from SNP 41484 to 42084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,134 DEBUG Processing 193/893 atomic regions from SNP 57628 to 58228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,217 DEBUG Processing 193/853 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,234 DEBUG Processing 87/1017 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,299 DEBUG Processing 115/1128 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,325 DEBUG Processing 140/471 atomic regions from SNP 41784 to 42384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,369 DEBUG Processing 194/893 atomic regions from SNP 57928 to 58528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,447 DEBUG Processing 194/853 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,520 DEBUG Processing 88/1017 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,563 DEBUG Processing 141/471 atomic regions from SNP 42084 to 42684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,572 DEBUG Processing 116/1128 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,610 DEBUG Processing 195/893 atomic regions from SNP 58228 to 58828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,700 DEBUG Processing 195/853 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,793 DEBUG Processing 142/471 atomic regions from SNP 42384 to 42984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:07,813 DEBUG Processing 89/1017 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,842 DEBUG Processing 117/1128 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,848 DEBUG Processing 196/893 atomic regions from SNP 58528 to 59128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,961 DEBUG Processing 196/853 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,035 DEBUG Processing 143/471 atomic regions from SNP 42684 to 43284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,092 DEBUG Processing 197/893 atomic regions from SNP 58828 to 59428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,100 DEBUG Processing 90/1017 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,121 DEBUG Processing 118/1128 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,207 DEBUG Processing 197/853 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,262 DEBUG Processing 144/471 atomic regions from SNP 42984 to 43584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,330 DEBUG Processing 198/893 atomic regions from SNP 59128 to 59728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,365 DEBUG Processing 91/1017 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,392 DEBUG Processing 119/1128 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,450 DEBUG Processing 198/853 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,487 DEBUG Processing 145/471 atomic regions from SNP 43284 to 43884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,561 DEBUG Processing 199/893 atomic regions from SNP 59428 to 60028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,647 DEBUG Processing 92/1017 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,667 DEBUG Processing 120/1128 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,686 DEBUG Processing 199/853 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,713 DEBUG Processing 146/471 atomic regions from SNP 43584 to 44184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:08,790 DEBUG Processing 200/893 atomic regions from SNP 59728 to 60328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,928 DEBUG Processing 200/853 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,934 DEBUG Processing 93/1017 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,947 DEBUG Processing 121/1128 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,949 DEBUG Processing 147/471 atomic regions from SNP 43884 to 44484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,019 DEBUG Processing 201/893 atomic regions from SNP 60028 to 60628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,168 DEBUG Processing 201/853 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,184 DEBUG Processing 148/471 atomic regions from SNP 44184 to 44784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,222 DEBUG Processing 94/1017 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,225 DEBUG Processing 122/1128 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,254 DEBUG Processing 202/893 atomic regions from SNP 60328 to 60928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,401 DEBUG Processing 202/853 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,414 DEBUG Processing 149/471 atomic regions from SNP 44484 to 45084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,484 DEBUG Processing 95/1017 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,492 DEBUG Processing 203/893 atomic regions from SNP 60628 to 61228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,506 DEBUG Processing 123/1128 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,631 DEBUG Processing 203/853 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,639 DEBUG Processing 150/471 atomic regions from SNP 44784 to 45384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,729 DEBUG Processing 204/893 atomic regions from SNP 60928 to 61528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,740 DEBUG Processing 96/1017 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,779 DEBUG Processing 124/1128 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,856 DEBUG Processing 204/853 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,863 DEBUG Processing 151/471 atomic regions from SNP 45084 to 45684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:09,968 DEBUG Processing 205/893 atomic regions from SNP 61228 to 61828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,002 DEBUG Processing 97/1017 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,057 DEBUG Processing 125/1128 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,092 DEBUG Processing 205/853 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,095 DEBUG Processing 152/471 atomic regions from SNP 45384 to 45984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,209 DEBUG Processing 206/893 atomic regions from SNP 61528 to 62128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,268 DEBUG Processing 98/1017 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,330 DEBUG Processing 153/471 atomic regions from SNP 45684 to 46284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,331 DEBUG Processing 206/853 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,338 DEBUG Processing 126/1128 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,447 DEBUG Processing 207/893 atomic regions from SNP 61828 to 62428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,552 DEBUG Processing 99/1017 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,608 DEBUG Processing 154/471 atomic regions from SNP 45984 to 46584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,628 DEBUG Processing 207/853 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,673 DEBUG Processing 127/1128 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,703 DEBUG Processing 208/893 atomic regions from SNP 62128 to 62728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,853 DEBUG Processing 100/1017 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,926 DEBUG Processing 155/471 atomic regions from SNP 46284 to 46884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:10,953 DEBUG Processing 208/853 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,014 DEBUG Processing 209/893 atomic regions from SNP 62428 to 63028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,033 DEBUG Processing 128/1128 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,171 DEBUG Processing 101/1017 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,247 DEBUG Processing 156/471 atomic regions from SNP 46584 to 47184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,299 DEBUG Processing 209/853 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,343 DEBUG Processing 210/893 atomic regions from SNP 62728 to 63328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,398 DEBUG Processing 129/1128 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,452 DEBUG Processing 102/1017 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,477 DEBUG Processing 157/471 atomic regions from SNP 46884 to 47484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,547 DEBUG Processing 210/853 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,622 DEBUG Processing 211/893 atomic regions from SNP 63028 to 63628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,733 DEBUG Processing 130/1128 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,738 DEBUG Processing 158/471 atomic regions from SNP 47184 to 47784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:11,770 DEBUG Processing 103/1017 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,826 DEBUG Processing 211/853 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,862 DEBUG Processing 212/893 atomic regions from SNP 63328 to 63928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,973 DEBUG Processing 159/471 atomic regions from SNP 47484 to 48084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,010 DEBUG Processing 131/1128 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,040 DEBUG Processing 104/1017 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,068 DEBUG Processing 212/853 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,104 DEBUG Processing 213/893 atomic regions from SNP 63628 to 64228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,200 DEBUG Processing 160/471 atomic regions from SNP 47784 to 48384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,286 DEBUG Processing 132/1128 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,308 DEBUG Processing 213/853 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,319 DEBUG Processing 105/1017 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,345 DEBUG Processing 214/893 atomic regions from SNP 63928 to 64528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,422 DEBUG Processing 161/471 atomic regions from SNP 48084 to 48684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,551 DEBUG Processing 214/853 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,566 DEBUG Processing 133/1128 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,589 DEBUG Processing 215/893 atomic regions from SNP 64228 to 64828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,608 DEBUG Processing 106/1017 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,646 DEBUG Processing 162/471 atomic regions from SNP 48384 to 48984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:12,791 DEBUG Processing 215/853 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,837 DEBUG Processing 216/893 atomic regions from SNP 64528 to 65128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,849 DEBUG Processing 134/1128 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,866 DEBUG Processing 107/1017 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,873 DEBUG Processing 163/471 atomic regions from SNP 48684 to 49284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,082 DEBUG Processing 216/853 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,139 DEBUG Processing 217/893 atomic regions from SNP 64828 to 65428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,167 DEBUG Processing 164/471 atomic regions from SNP 48984 to 49584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,187 DEBUG Processing 135/1128 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,202 DEBUG Processing 108/1017 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,389 DEBUG Processing 217/853 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,496 DEBUG Processing 218/893 atomic regions from SNP 65128 to 65728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,508 DEBUG Processing 165/471 atomic regions from SNP 49284 to 49884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,580 DEBUG Processing 136/1128 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,592 DEBUG Processing 109/1017 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,645 DEBUG Processing 218/853 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,740 DEBUG Processing 219/893 atomic regions from SNP 65428 to 66028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,760 DEBUG Processing 166/471 atomic regions from SNP 49584 to 50184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:13,903 DEBUG Processing 137/1128 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,919 DEBUG Processing 110/1017 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,930 DEBUG Processing 219/853 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,985 DEBUG Processing 220/893 atomic regions from SNP 65728 to 66328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,005 DEBUG Processing 167/471 atomic regions from SNP 49884 to 50484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,221 DEBUG Processing 220/853 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,237 DEBUG Processing 138/1128 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,250 DEBUG Processing 111/1017 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,259 DEBUG Processing 221/893 atomic regions from SNP 66028 to 66628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,266 DEBUG Processing 168/471 atomic regions from SNP 50184 to 50784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,463 DEBUG Processing 221/853 atomic regions from SNP 66220 to 66821 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,517 DEBUG Processing 112/1017 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,521 DEBUG Processing 139/1128 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,527 DEBUG Processing 169/471 atomic regions from SNP 50484 to 51084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,532 DEBUG Processing 222/893 atomic regions from SNP 66328 to 66928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,690 DEBUG Processing 222/853 atomic regions from SNP 66521 to 67122 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,769 DEBUG Processing 113/1017 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,770 DEBUG Processing 170/471 atomic regions from SNP 50784 to 51384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:14,784 DEBUG Processing 223/893 atomic regions from SNP 66628 to 67228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,805 DEBUG Processing 140/1128 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,931 DEBUG Processing 223/853 atomic regions from SNP 66822 to 67423 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,998 DEBUG Processing 171/471 atomic regions from SNP 51084 to 51684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,021 DEBUG Processing 224/893 atomic regions from SNP 66928 to 67528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,028 DEBUG Processing 114/1017 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,080 DEBUG Processing 141/1128 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,170 DEBUG Processing 224/853 atomic regions from SNP 67123 to 67724 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,216 DEBUG Processing 172/471 atomic regions from SNP 51384 to 51984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,252 DEBUG Processing 225/893 atomic regions from SNP 67228 to 67828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,291 DEBUG Processing 115/1017 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,381 DEBUG Processing 142/1128 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,462 DEBUG Processing 225/853 atomic regions from SNP 67424 to 68025 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,501 DEBUG Processing 173/471 atomic regions from SNP 51684 to 52284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,539 DEBUG Processing 226/893 atomic regions from SNP 67528 to 68128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,619 DEBUG Processing 116/1017 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,709 DEBUG Processing 143/1128 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,774 DEBUG Segmenting atomic regions: 2025-01-31 09:45:15,786 DEBUG Processing 226/853 atomic regions from SNP 67725 to 68326 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,811 DEBUG Processing 174/471 atomic regions from SNP 51984 to 52584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:15,863 DEBUG Processing 227/893 atomic regions from SNP 67828 to 68428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,891 DEBUG Processing 1/644 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,959 DEBUG Processing 117/1017 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,077 DEBUG Processing 144/1128 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,117 DEBUG Processing 175/471 atomic regions from SNP 52284 to 52884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,125 DEBUG Processing 227/853 atomic regions from SNP 68026 to 68627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,172 DEBUG Processing 228/893 atomic regions from SNP 68128 to 68728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,213 DEBUG Processing 2/644 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,249 DEBUG Processing 118/1017 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,409 DEBUG Processing 145/1128 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,461 DEBUG Processing 176/471 atomic regions from SNP 52584 to 53184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,487 DEBUG Processing 228/853 atomic regions from SNP 68327 to 68928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,574 DEBUG Processing 229/893 atomic regions from SNP 68428 to 69028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,625 DEBUG Processing 3/644 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,653 DEBUG Processing 119/1017 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,735 DEBUG Processing 146/1128 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,753 DEBUG Processing 177/471 atomic regions from SNP 52884 to 53484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:16,764 DEBUG Processing 229/853 atomic regions from SNP 68628 to 69229 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,828 DEBUG Processing 230/893 atomic regions from SNP 68728 to 69328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,877 DEBUG Processing 4/644 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,937 DEBUG Processing 120/1017 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,982 DEBUG Processing 178/471 atomic regions from SNP 53184 to 53784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,004 DEBUG Processing 230/853 atomic regions from SNP 68929 to 69530 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,007 DEBUG Processing 147/1128 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,079 DEBUG Processing 231/893 atomic regions from SNP 69028 to 69628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,151 DEBUG Processing 5/644 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,205 DEBUG Processing 179/471 atomic regions from SNP 53484 to 54084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,207 DEBUG Processing 121/1017 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,235 DEBUG Processing 231/853 atomic regions from SNP 69230 to 69831 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,280 DEBUG Processing 148/1128 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,326 DEBUG Processing 232/893 atomic regions from SNP 69328 to 69928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,426 DEBUG Processing 6/644 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,433 DEBUG Processing 180/471 atomic regions from SNP 53784 to 54384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,468 DEBUG Processing 232/853 atomic regions from SNP 69531 to 70132 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,478 DEBUG Processing 122/1017 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,550 DEBUG Processing 149/1128 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,565 DEBUG Processing 233/893 atomic regions from SNP 69628 to 70228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,659 DEBUG Processing 181/471 atomic regions from SNP 54084 to 54684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,670 DEBUG Processing 7/644 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,700 DEBUG Processing 233/853 atomic regions from SNP 69832 to 70433 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,747 DEBUG Processing 123/1017 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,802 DEBUG Processing 234/893 atomic regions from SNP 69928 to 70528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,827 DEBUG Processing 150/1128 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,889 DEBUG Processing 182/471 atomic regions from SNP 54384 to 54984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:17,925 DEBUG Processing 8/644 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,932 DEBUG Processing 234/853 atomic regions from SNP 70133 to 70734 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,013 DEBUG Processing 124/1017 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,040 DEBUG Processing 235/893 atomic regions from SNP 70228 to 70828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,099 DEBUG Processing 151/1128 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,115 DEBUG Processing 183/471 atomic regions from SNP 54684 to 55284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,164 DEBUG Processing 235/853 atomic regions from SNP 70434 to 71035 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,185 DEBUG Processing 9/644 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,275 DEBUG Processing 236/893 atomic regions from SNP 70528 to 71128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,280 DEBUG Processing 125/1017 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,343 DEBUG Processing 184/471 atomic regions from SNP 54984 to 55584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,371 DEBUG Processing 152/1128 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,395 DEBUG Processing 236/853 atomic regions from SNP 70735 to 71336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,425 DEBUG Processing 10/644 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,509 DEBUG Processing 237/893 atomic regions from SNP 70828 to 71428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,544 DEBUG Processing 126/1017 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,571 DEBUG Processing 185/471 atomic regions from SNP 55284 to 55884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,628 DEBUG Processing 237/853 atomic regions from SNP 71036 to 71637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,638 DEBUG Processing 153/1128 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,648 DEBUG Processing 11/644 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,740 DEBUG Processing 238/893 atomic regions from SNP 71128 to 71728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,795 DEBUG Processing 186/471 atomic regions from SNP 55584 to 56184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:18,826 DEBUG Processing 127/1017 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,864 DEBUG Processing 238/853 atomic regions from SNP 71337 to 71938 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,895 DEBUG Processing 12/644 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,916 DEBUG Processing 154/1128 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,973 DEBUG Processing 239/893 atomic regions from SNP 71428 to 72028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,016 DEBUG Processing 187/471 atomic regions from SNP 55884 to 56484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,101 DEBUG Processing 239/853 atomic regions from SNP 71638 to 72239 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,122 DEBUG Processing 128/1017 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,124 DEBUG Processing 13/644 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,194 DEBUG Processing 155/1128 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,209 DEBUG Processing 240/893 atomic regions from SNP 71728 to 72328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,239 DEBUG Processing 188/471 atomic regions from SNP 56184 to 56784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,332 DEBUG Processing 240/853 atomic regions from SNP 71939 to 72540 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,368 DEBUG Processing 14/644 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,420 DEBUG Processing 129/1017 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,448 DEBUG Processing 241/893 atomic regions from SNP 72028 to 72628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,468 DEBUG Processing 189/471 atomic regions from SNP 56484 to 57084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,470 DEBUG Processing 156/1128 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,563 DEBUG Processing 241/853 atomic regions from SNP 72240 to 72841 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,627 DEBUG Processing 15/644 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,687 DEBUG Processing 242/893 atomic regions from SNP 72328 to 72928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,699 DEBUG Processing 190/471 atomic regions from SNP 56784 to 57384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:19,725 DEBUG Processing 130/1017 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,751 DEBUG Processing 157/1128 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,792 DEBUG Processing 242/853 atomic regions from SNP 72541 to 73142 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,874 DEBUG Processing 16/644 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,922 DEBUG Processing 243/893 atomic regions from SNP 72628 to 73228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,925 DEBUG Processing 191/471 atomic regions from SNP 57084 to 57684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,019 DEBUG Processing 131/1017 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,027 DEBUG Processing 243/853 atomic regions from SNP 72842 to 73443 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,052 DEBUG Processing 158/1128 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,126 DEBUG Processing 17/644 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,162 DEBUG Processing 244/893 atomic regions from SNP 72928 to 73528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,162 DEBUG Processing 192/471 atomic regions from SNP 57384 to 57984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,261 DEBUG Processing 244/853 atomic regions from SNP 73143 to 73744 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,301 DEBUG Processing 132/1017 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,325 DEBUG Processing 159/1128 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,362 DEBUG Processing 18/644 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,393 DEBUG Processing 245/893 atomic regions from SNP 73228 to 73828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,403 DEBUG Processing 193/471 atomic regions from SNP 57684 to 58284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,496 DEBUG Processing 245/853 atomic regions from SNP 73444 to 74045 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,582 DEBUG Processing 133/1017 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,597 DEBUG Processing 160/1128 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,609 DEBUG Processing 19/644 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,621 DEBUG Processing 246/893 atomic regions from SNP 73528 to 74128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,639 DEBUG Processing 194/471 atomic regions from SNP 57984 to 58584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,730 DEBUG Processing 246/853 atomic regions from SNP 73745 to 74346 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,853 DEBUG Processing 247/893 atomic regions from SNP 73828 to 74428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,854 DEBUG Processing 20/644 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,866 DEBUG Processing 195/471 atomic regions from SNP 58284 to 58884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:20,866 DEBUG Processing 161/1128 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,868 DEBUG Processing 134/1017 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,960 DEBUG Processing 247/853 atomic regions from SNP 74046 to 74647 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,088 DEBUG Processing 248/893 atomic regions from SNP 74128 to 74728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,098 DEBUG Processing 196/471 atomic regions from SNP 58584 to 59184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,102 DEBUG Processing 21/644 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,140 DEBUG Processing 162/1128 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,157 DEBUG Processing 135/1017 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,193 DEBUG Processing 248/853 atomic regions from SNP 74347 to 74948 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,321 DEBUG Processing 249/893 atomic regions from SNP 74428 to 75028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,330 DEBUG Processing 197/471 atomic regions from SNP 58884 to 59484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,352 DEBUG Processing 22/644 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,418 DEBUG Processing 163/1128 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,427 DEBUG Processing 249/853 atomic regions from SNP 74648 to 75249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,450 DEBUG Processing 136/1017 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,551 DEBUG Processing 250/893 atomic regions from SNP 74728 to 75328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,558 DEBUG Processing 198/471 atomic regions from SNP 59184 to 59784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,599 DEBUG Processing 23/644 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,667 DEBUG Processing 250/853 atomic regions from SNP 74949 to 75550 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,699 DEBUG Processing 164/1128 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,747 DEBUG Processing 137/1017 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,777 DEBUG Processing 199/471 atomic regions from SNP 59484 to 60084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:21,780 DEBUG Processing 251/893 atomic regions from SNP 75028 to 75628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,861 DEBUG Processing 24/644 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,901 DEBUG Processing 251/853 atomic regions from SNP 75250 to 75851 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,972 DEBUG Processing 165/1128 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,003 DEBUG Processing 200/471 atomic regions from SNP 59784 to 60384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,015 DEBUG Processing 252/893 atomic regions from SNP 75328 to 75928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,035 DEBUG Processing 138/1017 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,108 DEBUG Processing 25/644 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,133 DEBUG Processing 252/853 atomic regions from SNP 75551 to 76152 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,246 DEBUG Processing 166/1128 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,252 DEBUG Processing 253/893 atomic regions from SNP 75628 to 76228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,255 DEBUG Processing 201/471 atomic regions from SNP 60084 to 60684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,312 DEBUG Processing 139/1017 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,360 DEBUG Processing 26/644 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,361 DEBUG Processing 253/853 atomic regions from SNP 75852 to 76453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,495 DEBUG Processing 254/893 atomic regions from SNP 75928 to 76528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,513 DEBUG Processing 202/471 atomic regions from SNP 60384 to 60984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,524 DEBUG Processing 167/1128 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,588 DEBUG Processing 254/853 atomic regions from SNP 76153 to 76754 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,602 DEBUG Processing 27/644 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,608 DEBUG Processing 140/1017 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,738 DEBUG Processing 255/893 atomic regions from SNP 76228 to 76828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,767 DEBUG Processing 203/471 atomic regions from SNP 60684 to 61284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:22,804 DEBUG Processing 168/1128 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,821 DEBUG Processing 255/853 atomic regions from SNP 76454 to 77055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,832 DEBUG Processing 28/644 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,890 DEBUG Processing 141/1017 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,976 DEBUG Processing 256/893 atomic regions from SNP 76528 to 77128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,028 DEBUG Processing 204/471 atomic regions from SNP 60984 to 61584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,057 DEBUG Processing 256/853 atomic regions from SNP 76755 to 77356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,059 DEBUG Processing 29/644 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,084 DEBUG Processing 169/1128 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,176 DEBUG Processing 142/1017 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,209 DEBUG Processing 257/893 atomic regions from SNP 76828 to 77428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,286 DEBUG Processing 30/644 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,292 DEBUG Processing 205/471 atomic regions from SNP 61284 to 61884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,294 DEBUG Processing 257/853 atomic regions from SNP 77056 to 77657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,360 DEBUG Processing 170/1128 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,443 DEBUG Processing 258/893 atomic regions from SNP 77128 to 77728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,473 DEBUG Processing 143/1017 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,516 DEBUG Processing 31/644 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,538 DEBUG Processing 258/853 atomic regions from SNP 77357 to 77958 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,563 DEBUG Processing 206/471 atomic regions from SNP 61584 to 62184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,635 DEBUG Processing 171/1128 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,680 DEBUG Processing 259/893 atomic regions from SNP 77428 to 78028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,753 DEBUG Processing 32/644 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,777 DEBUG Processing 144/1017 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,785 DEBUG Processing 259/853 atomic regions from SNP 77658 to 78259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,837 DEBUG Processing 207/471 atomic regions from SNP 61884 to 62484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:23,908 DEBUG Processing 172/1128 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,917 DEBUG Processing 260/893 atomic regions from SNP 77728 to 78328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,003 DEBUG Processing 33/644 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,055 DEBUG Processing 260/853 atomic regions from SNP 77959 to 78560 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,091 DEBUG Processing 145/1017 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,128 DEBUG Processing 208/471 atomic regions from SNP 62184 to 62784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,157 DEBUG Processing 261/893 atomic regions from SNP 78028 to 78628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,215 DEBUG Processing 173/1128 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,293 DEBUG Processing 34/644 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,338 DEBUG Processing 261/853 atomic regions from SNP 78260 to 78861 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,411 DEBUG Processing 262/893 atomic regions from SNP 78328 to 78928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,413 DEBUG Processing 146/1017 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,424 DEBUG Processing 209/471 atomic regions from SNP 62484 to 63084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,538 DEBUG Processing 174/1128 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,555 DEBUG Processing 35/644 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,617 DEBUG Processing 262/853 atomic regions from SNP 78561 to 79162 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,697 DEBUG Processing 263/893 atomic regions from SNP 78628 to 79228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,709 DEBUG Processing 210/471 atomic regions from SNP 62784 to 63384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,750 DEBUG Processing 147/1017 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,833 DEBUG Processing 36/644 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,864 DEBUG Processing 175/1128 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,887 DEBUG Processing 263/853 atomic regions from SNP 78862 to 79463 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,986 DEBUG Processing 211/471 atomic regions from SNP 63084 to 63684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:24,994 DEBUG Processing 264/893 atomic regions from SNP 78928 to 79528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,050 DEBUG Processing 148/1017 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,067 DEBUG Processing 37/644 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,116 DEBUG Processing 264/853 atomic regions from SNP 79163 to 79764 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,168 DEBUG Processing 176/1128 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,250 DEBUG Processing 212/471 atomic regions from SNP 63384 to 63984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,275 DEBUG Processing 265/893 atomic regions from SNP 79228 to 79828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,295 DEBUG Processing 38/644 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,336 DEBUG Processing 149/1017 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,353 DEBUG Processing 265/853 atomic regions from SNP 79464 to 80065 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,469 DEBUG Processing 177/1128 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,496 DEBUG Processing 213/471 atomic regions from SNP 63684 to 64284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,523 DEBUG Processing 39/644 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,549 DEBUG Processing 266/893 atomic regions from SNP 79528 to 80128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,583 DEBUG Processing 266/853 atomic regions from SNP 79765 to 80366 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,628 DEBUG Processing 150/1017 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,739 DEBUG Processing 214/471 atomic regions from SNP 63984 to 64584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:25,747 DEBUG Processing 40/644 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,772 DEBUG Processing 178/1128 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,813 DEBUG Processing 267/853 atomic regions from SNP 80066 to 80667 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,821 DEBUG Processing 267/893 atomic regions from SNP 79828 to 80428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,922 DEBUG Processing 151/1017 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,984 DEBUG Processing 41/644 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,020 DEBUG Processing 215/471 atomic regions from SNP 64284 to 64884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,063 DEBUG Processing 268/853 atomic regions from SNP 80367 to 80968 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,080 DEBUG Processing 179/1128 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,121 DEBUG Processing 268/893 atomic regions from SNP 80128 to 80728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,238 DEBUG Processing 42/644 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,251 DEBUG Processing 152/1017 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,256 DEBUG Processing 216/471 atomic regions from SNP 64584 to 65184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,297 DEBUG Processing 269/853 atomic regions from SNP 80668 to 81269 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,361 DEBUG Processing 269/893 atomic regions from SNP 80428 to 81028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,381 DEBUG Processing 180/1128 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,478 DEBUG Processing 43/644 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,485 DEBUG Processing 217/471 atomic regions from SNP 64884 to 65484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,532 DEBUG Processing 270/853 atomic regions from SNP 80969 to 81570 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,538 DEBUG Processing 153/1017 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,593 DEBUG Processing 270/893 atomic regions from SNP 80728 to 81328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,671 DEBUG Processing 181/1128 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,702 DEBUG Processing 44/644 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,711 DEBUG Processing 218/471 atomic regions from SNP 65184 to 65784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,761 DEBUG Processing 271/853 atomic regions from SNP 81270 to 81871 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,811 DEBUG Processing 154/1017 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,826 DEBUG Processing 271/893 atomic regions from SNP 81028 to 81628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,926 DEBUG Processing 45/644 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,938 DEBUG Processing 219/471 atomic regions from SNP 65484 to 66084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:26,942 DEBUG Processing 182/1128 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,996 DEBUG Processing 272/853 atomic regions from SNP 81571 to 82172 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,063 DEBUG Processing 272/893 atomic regions from SNP 81328 to 81928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,074 DEBUG Processing 155/1017 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,153 DEBUG Processing 46/644 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,166 DEBUG Processing 220/471 atomic regions from SNP 65784 to 66384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,213 DEBUG Processing 183/1128 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,231 DEBUG Processing 273/853 atomic regions from SNP 81872 to 82473 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,302 DEBUG Processing 273/893 atomic regions from SNP 81628 to 82228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,347 DEBUG Processing 156/1017 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,379 DEBUG Processing 47/644 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,389 DEBUG Processing 221/471 atomic regions from SNP 66084 to 66684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,463 DEBUG Processing 274/853 atomic regions from SNP 82173 to 82774 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,480 DEBUG Processing 184/1128 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,542 DEBUG Processing 274/893 atomic regions from SNP 81928 to 82528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,610 DEBUG Processing 48/644 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,615 DEBUG Processing 222/471 atomic regions from SNP 66384 to 66984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,640 DEBUG Processing 157/1017 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,688 DEBUG Processing 275/853 atomic regions from SNP 82474 to 83075 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,743 DEBUG Processing 185/1128 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,775 DEBUG Processing 275/893 atomic regions from SNP 82228 to 82828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,842 DEBUG Processing 49/644 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,847 DEBUG Processing 223/471 atomic regions from SNP 66684 to 67284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:27,913 DEBUG Processing 276/853 atomic regions from SNP 82775 to 83376 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,934 DEBUG Processing 158/1017 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,002 DEBUG Processing 186/1128 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,004 DEBUG Processing 276/893 atomic regions from SNP 82528 to 83128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,065 DEBUG Processing 50/644 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,103 DEBUG Processing 224/471 atomic regions from SNP 66984 to 67584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,150 DEBUG Processing 277/853 atomic regions from SNP 83076 to 83677 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,216 DEBUG Processing 159/1017 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,233 DEBUG Processing 277/893 atomic regions from SNP 82828 to 83428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,282 DEBUG Processing 187/1128 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,283 DEBUG Processing 51/644 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,354 DEBUG Processing 225/471 atomic regions from SNP 67284 to 67884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,397 DEBUG Processing 278/853 atomic regions from SNP 83377 to 83978 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,470 DEBUG Processing 278/893 atomic regions from SNP 83128 to 83728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,497 DEBUG Processing 52/644 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,503 DEBUG Processing 160/1017 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,583 DEBUG Processing 226/471 atomic regions from SNP 67584 to 68184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,584 DEBUG Processing 188/1128 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,654 DEBUG Processing 279/853 atomic regions from SNP 83678 to 84279 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,703 DEBUG Processing 279/893 atomic regions from SNP 83428 to 84028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,719 DEBUG Processing 53/644 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,791 DEBUG Processing 161/1017 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,806 DEBUG Processing 227/471 atomic regions from SNP 67884 to 68484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:28,887 DEBUG Processing 189/1128 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,915 DEBUG Processing 280/853 atomic regions from SNP 83979 to 84580 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,949 DEBUG Processing 280/893 atomic regions from SNP 83728 to 84328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,956 DEBUG Processing 54/644 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,024 DEBUG Processing 228/471 atomic regions from SNP 68184 to 68784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,077 DEBUG Processing 162/1017 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,151 DEBUG Processing 281/853 atomic regions from SNP 84280 to 84881 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,181 DEBUG Processing 55/644 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,191 DEBUG Processing 190/1128 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,193 DEBUG Processing 281/893 atomic regions from SNP 84028 to 84628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,248 DEBUG Processing 229/471 atomic regions from SNP 68484 to 69084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,352 DEBUG Processing 163/1017 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,384 DEBUG Processing 282/853 atomic regions from SNP 84581 to 85182 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,410 DEBUG Processing 56/644 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,435 DEBUG Processing 282/893 atomic regions from SNP 84328 to 84928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,476 DEBUG Processing 230/471 atomic regions from SNP 68784 to 69384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,501 DEBUG Processing 191/1128 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,611 DEBUG Processing 283/853 atomic regions from SNP 84882 to 85483 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,632 DEBUG Processing 57/644 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,638 DEBUG Processing 164/1017 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,671 DEBUG Processing 283/893 atomic regions from SNP 84628 to 85228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,712 DEBUG Processing 231/471 atomic regions from SNP 69084 to 69684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:29,799 DEBUG Processing 192/1128 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,837 DEBUG Processing 284/853 atomic regions from SNP 85183 to 85784 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,855 DEBUG Processing 58/644 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,904 DEBUG Processing 284/893 atomic regions from SNP 84928 to 85528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,929 DEBUG Processing 165/1017 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,938 DEBUG Processing 232/471 atomic regions from SNP 69384 to 69984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,064 DEBUG Processing 285/853 atomic regions from SNP 85484 to 86085 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,074 DEBUG Processing 59/644 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,094 DEBUG Processing 193/1128 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,140 DEBUG Processing 285/893 atomic regions from SNP 85228 to 85828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,164 DEBUG Processing 233/471 atomic regions from SNP 69684 to 70284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,219 DEBUG Processing 166/1017 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,291 DEBUG Processing 60/644 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,292 DEBUG Processing 286/853 atomic regions from SNP 85785 to 86386 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,371 DEBUG Processing 194/1128 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,395 DEBUG Processing 286/893 atomic regions from SNP 85528 to 86128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,398 DEBUG Processing 234/471 atomic regions from SNP 69984 to 70584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,502 DEBUG Processing 167/1017 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,511 DEBUG Processing 61/644 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,518 DEBUG Processing 287/853 atomic regions from SNP 86086 to 86687 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,630 DEBUG Processing 235/471 atomic regions from SNP 70284 to 70884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,649 DEBUG Processing 287/893 atomic regions from SNP 85828 to 86428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,651 DEBUG Processing 195/1128 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,732 DEBUG Processing 62/644 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,744 DEBUG Processing 288/853 atomic regions from SNP 86387 to 86988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,775 DEBUG Processing 168/1017 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,856 DEBUG Processing 236/471 atomic regions from SNP 70584 to 71184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:30,889 DEBUG Processing 288/893 atomic regions from SNP 86128 to 86728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,945 DEBUG Processing 196/1128 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,954 DEBUG Processing 63/644 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,976 DEBUG Processing 289/853 atomic regions from SNP 86688 to 87288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,052 DEBUG Processing 169/1017 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,074 DEBUG Processing 237/471 atomic regions from SNP 70884 to 71484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,121 DEBUG Processing 289/893 atomic regions from SNP 86428 to 87028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,176 DEBUG Processing 64/644 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,213 DEBUG Processing 290/853 atomic regions from SNP 86988 to 87588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,231 DEBUG Processing 197/1128 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,292 DEBUG Processing 238/471 atomic regions from SNP 71184 to 71784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,336 DEBUG Processing 170/1017 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,350 DEBUG Processing 290/893 atomic regions from SNP 86728 to 87328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,397 DEBUG Processing 65/644 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,447 DEBUG Processing 291/853 atomic regions from SNP 87288 to 87888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,505 DEBUG Processing 198/1128 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,517 DEBUG Processing 239/471 atomic regions from SNP 71484 to 72084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,581 DEBUG Processing 291/893 atomic regions from SNP 87028 to 87628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,614 DEBUG Processing 66/644 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,616 DEBUG Processing 171/1017 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,676 DEBUG Processing 292/853 atomic regions from SNP 87588 to 88188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,745 DEBUG Processing 240/471 atomic regions from SNP 71784 to 72384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:31,803 DEBUG Processing 199/1128 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,813 DEBUG Processing 292/893 atomic regions from SNP 87328 to 87928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,833 DEBUG Processing 67/644 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,892 DEBUG Processing 172/1017 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,905 DEBUG Processing 293/853 atomic regions from SNP 87888 to 88488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,968 DEBUG Processing 241/471 atomic regions from SNP 72084 to 72684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,051 DEBUG Processing 293/893 atomic regions from SNP 87628 to 88228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,058 DEBUG Processing 68/644 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,101 DEBUG Processing 200/1128 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,143 DEBUG Processing 294/853 atomic regions from SNP 88188 to 88788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,179 DEBUG Processing 173/1017 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,197 DEBUG Processing 242/471 atomic regions from SNP 72384 to 72984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,281 DEBUG Processing 69/644 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,288 DEBUG Processing 294/893 atomic regions from SNP 87928 to 88528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,374 DEBUG Processing 295/853 atomic regions from SNP 88488 to 89088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,386 DEBUG Processing 201/1128 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,418 DEBUG Processing 243/471 atomic regions from SNP 72684 to 73284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,463 DEBUG Processing 174/1017 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,503 DEBUG Processing 70/644 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,517 DEBUG Processing 295/893 atomic regions from SNP 88228 to 88828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,610 DEBUG Processing 296/853 atomic regions from SNP 88788 to 89388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,647 DEBUG Processing 244/471 atomic regions from SNP 72984 to 73584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,659 DEBUG Processing 202/1128 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,722 DEBUG Processing 71/644 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,747 DEBUG Processing 296/893 atomic regions from SNP 88528 to 89128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,749 DEBUG Processing 175/1017 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,843 DEBUG Processing 297/853 atomic regions from SNP 89088 to 89688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,874 DEBUG Processing 245/471 atomic regions from SNP 73284 to 73884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:32,925 DEBUG Processing 203/1128 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,939 DEBUG Processing 72/644 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,973 DEBUG Processing 297/893 atomic regions from SNP 88828 to 89428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,034 DEBUG Processing 176/1017 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,074 DEBUG Processing 298/853 atomic regions from SNP 89388 to 89988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,097 DEBUG Processing 246/471 atomic regions from SNP 73584 to 74184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,155 DEBUG Processing 73/644 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,193 DEBUG Processing 204/1128 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,203 DEBUG Processing 298/893 atomic regions from SNP 89128 to 89728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,303 DEBUG Processing 299/853 atomic regions from SNP 89688 to 90288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,320 DEBUG Processing 247/471 atomic regions from SNP 73884 to 74484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,323 DEBUG Processing 177/1017 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,376 DEBUG Processing 74/644 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,432 DEBUG Processing 299/893 atomic regions from SNP 89428 to 90028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,478 DEBUG Processing 205/1128 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,533 DEBUG Processing 300/853 atomic regions from SNP 89988 to 90588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,544 DEBUG Processing 248/471 atomic regions from SNP 74184 to 74784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,608 DEBUG Processing 178/1017 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,610 DEBUG Processing 75/644 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,664 DEBUG Processing 300/893 atomic regions from SNP 89728 to 90328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,760 DEBUG Processing 206/1128 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,762 DEBUG Processing 301/853 atomic regions from SNP 90288 to 90888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,767 DEBUG Processing 249/471 atomic regions from SNP 74484 to 75084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,848 DEBUG Processing 76/644 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,892 DEBUG Processing 179/1017 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,894 DEBUG Processing 301/893 atomic regions from SNP 90028 to 90628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,992 DEBUG Processing 250/471 atomic regions from SNP 74784 to 75384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:33,992 DEBUG Processing 302/853 atomic regions from SNP 90588 to 91188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,026 DEBUG Processing 207/1128 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,069 DEBUG Processing 77/644 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,122 DEBUG Processing 302/893 atomic regions from SNP 90328 to 90928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,161 DEBUG Processing 180/1017 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,220 DEBUG Processing 251/471 atomic regions from SNP 75084 to 75684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,222 DEBUG Processing 303/853 atomic regions from SNP 90888 to 91488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,289 DEBUG Processing 78/644 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,309 DEBUG Processing 208/1128 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,354 DEBUG Processing 303/893 atomic regions from SNP 90628 to 91228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,419 DEBUG Processing 181/1017 atomic regions from SNP 54180 to 54781 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,446 DEBUG Processing 252/471 atomic regions from SNP 75384 to 75984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,451 DEBUG Processing 304/853 atomic regions from SNP 91188 to 91788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,511 DEBUG Processing 79/644 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,585 DEBUG Processing 304/893 atomic regions from SNP 90928 to 91528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,605 DEBUG Processing 209/1128 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,673 DEBUG Processing 253/471 atomic regions from SNP 75684 to 76284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,685 DEBUG Processing 305/853 atomic regions from SNP 91488 to 92088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,688 DEBUG Processing 182/1017 atomic regions from SNP 54481 to 55082 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,734 DEBUG Processing 80/644 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,811 DEBUG Processing 305/893 atomic regions from SNP 91228 to 91828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,886 DEBUG Processing 210/1128 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,902 DEBUG Processing 254/471 atomic regions from SNP 75984 to 76584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:34,923 DEBUG Processing 306/853 atomic regions from SNP 91788 to 92388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,957 DEBUG Processing 81/644 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,975 DEBUG Processing 183/1017 atomic regions from SNP 54782 to 55383 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,035 DEBUG Processing 306/893 atomic regions from SNP 91528 to 92128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,135 DEBUG Processing 255/471 atomic regions from SNP 76284 to 76884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,154 DEBUG Processing 211/1128 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,163 DEBUG Processing 307/853 atomic regions from SNP 92088 to 92688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,184 DEBUG Processing 82/644 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,254 DEBUG Processing 184/1017 atomic regions from SNP 55083 to 55684 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,271 DEBUG Processing 307/893 atomic regions from SNP 91828 to 92428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,359 DEBUG Processing 256/471 atomic regions from SNP 76584 to 77184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,400 DEBUG Processing 308/853 atomic regions from SNP 92388 to 92988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,410 DEBUG Processing 83/644 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,425 DEBUG Processing 212/1128 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,509 DEBUG Processing 185/1017 atomic regions from SNP 55384 to 55985 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,514 DEBUG Processing 308/893 atomic regions from SNP 92128 to 92728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,580 DEBUG Processing 257/471 atomic regions from SNP 76884 to 77484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,633 DEBUG Processing 309/853 atomic regions from SNP 92688 to 93288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,646 DEBUG Processing 84/644 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,700 DEBUG Processing 213/1128 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,744 DEBUG Processing 309/893 atomic regions from SNP 92428 to 93028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,762 DEBUG Processing 186/1017 atomic regions from SNP 55685 to 56286 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,796 DEBUG Processing 258/471 atomic regions from SNP 77184 to 77784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:35,857 DEBUG Processing 310/853 atomic regions from SNP 92988 to 93588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,866 DEBUG Processing 85/644 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,971 DEBUG Processing 214/1128 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,982 DEBUG Processing 310/893 atomic regions from SNP 92728 to 93328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,031 DEBUG Processing 259/471 atomic regions from SNP 77484 to 78084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,039 DEBUG Processing 187/1017 atomic regions from SNP 55986 to 56587 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,080 DEBUG Processing 311/853 atomic regions from SNP 93288 to 93888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,083 DEBUG Processing 86/644 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,231 DEBUG Processing 311/893 atomic regions from SNP 93028 to 93628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,251 DEBUG Processing 215/1128 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,267 DEBUG Processing 260/471 atomic regions from SNP 77784 to 78384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,304 DEBUG Processing 188/1017 atomic regions from SNP 56287 to 56888 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,309 DEBUG Processing 87/644 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,311 DEBUG Processing 312/853 atomic regions from SNP 93588 to 94188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,466 DEBUG Processing 312/893 atomic regions from SNP 93328 to 93928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,502 DEBUG Processing 261/471 atomic regions from SNP 78084 to 78684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,526 DEBUG Processing 216/1128 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,536 DEBUG Processing 88/644 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,550 DEBUG Processing 313/853 atomic regions from SNP 93888 to 94488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,588 DEBUG Processing 189/1017 atomic regions from SNP 56588 to 57189 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,697 DEBUG Processing 313/893 atomic regions from SNP 93628 to 94228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,736 DEBUG Processing 262/471 atomic regions from SNP 78384 to 78984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:36,765 DEBUG Processing 89/644 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,797 DEBUG Processing 314/853 atomic regions from SNP 94188 to 94788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,809 DEBUG Processing 217/1128 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,880 DEBUG Processing 190/1017 atomic regions from SNP 56889 to 57490 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,926 DEBUG Processing 314/893 atomic regions from SNP 93928 to 94528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,962 DEBUG Processing 263/471 atomic regions from SNP 78684 to 79284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,012 DEBUG Processing 90/644 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,039 DEBUG Processing 315/853 atomic regions from SNP 94488 to 95088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,090 DEBUG Processing 218/1128 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,147 DEBUG Processing 191/1017 atomic regions from SNP 57190 to 57791 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,153 DEBUG Processing 315/893 atomic regions from SNP 94228 to 94828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,177 DEBUG Processing 264/471 atomic regions from SNP 78984 to 79584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,251 DEBUG Processing 91/644 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,268 DEBUG Processing 316/853 atomic regions from SNP 94788 to 95388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,364 DEBUG Processing 219/1128 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,388 DEBUG Processing 316/893 atomic regions from SNP 94528 to 95128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,398 DEBUG Processing 265/471 atomic regions from SNP 79284 to 79884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,437 DEBUG Processing 192/1017 atomic regions from SNP 57491 to 58092 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,467 DEBUG Processing 92/644 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,491 DEBUG Processing 317/853 atomic regions from SNP 95088 to 95688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,630 DEBUG Processing 317/893 atomic regions from SNP 94828 to 95428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,632 DEBUG Processing 266/471 atomic regions from SNP 79584 to 80184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,636 DEBUG Processing 220/1128 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,687 DEBUG Processing 93/644 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,713 DEBUG Processing 318/853 atomic regions from SNP 95388 to 95988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,717 DEBUG Processing 193/1017 atomic regions from SNP 57792 to 58393 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,866 DEBUG Processing 267/471 atomic regions from SNP 79884 to 80484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:37,869 DEBUG Processing 318/893 atomic regions from SNP 95128 to 95728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,911 DEBUG Processing 94/644 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,912 DEBUG Processing 221/1128 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,942 DEBUG Processing 319/853 atomic regions from SNP 95688 to 96288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,992 DEBUG Processing 194/1017 atomic regions from SNP 58093 to 58694 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,099 DEBUG Processing 268/471 atomic regions from SNP 80184 to 80784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,108 DEBUG Processing 319/893 atomic regions from SNP 95428 to 96028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,136 DEBUG Processing 95/644 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,179 DEBUG Processing 320/853 atomic regions from SNP 95988 to 96588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,189 DEBUG Processing 222/1128 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,259 DEBUG Processing 195/1017 atomic regions from SNP 58394 to 58995 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,326 DEBUG Processing 269/471 atomic regions from SNP 80484 to 81084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,358 DEBUG Processing 320/893 atomic regions from SNP 95728 to 96328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,358 DEBUG Processing 96/644 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,416 DEBUG Processing 321/853 atomic regions from SNP 96288 to 96888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,463 DEBUG Processing 223/1128 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,516 DEBUG Processing 196/1017 atomic regions from SNP 58695 to 59296 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,551 DEBUG Processing 270/471 atomic regions from SNP 80784 to 81384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,593 DEBUG Processing 321/893 atomic regions from SNP 96028 to 96628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,598 DEBUG Processing 97/644 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,648 DEBUG Processing 322/853 atomic regions from SNP 96588 to 97188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,731 DEBUG Processing 224/1128 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,772 DEBUG Processing 271/471 atomic regions from SNP 81084 to 81684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:38,779 DEBUG Processing 197/1017 atomic regions from SNP 58996 to 59597 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,821 DEBUG Processing 322/893 atomic regions from SNP 96328 to 96928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,847 DEBUG Processing 98/644 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,876 DEBUG Processing 323/853 atomic regions from SNP 96888 to 97488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,994 DEBUG Processing 225/1128 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,002 DEBUG Processing 272/471 atomic regions from SNP 81384 to 81984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,045 DEBUG Processing 198/1017 atomic regions from SNP 59297 to 59898 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,060 DEBUG Processing 323/893 atomic regions from SNP 96628 to 97228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,104 DEBUG Processing 324/853 atomic regions from SNP 97188 to 97788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,105 DEBUG Processing 99/644 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,225 DEBUG Processing 273/471 atomic regions from SNP 81684 to 82284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,262 DEBUG Processing 226/1128 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,296 DEBUG Processing 324/893 atomic regions from SNP 96928 to 97528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,299 DEBUG Processing 199/1017 atomic regions from SNP 59598 to 60199 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,334 DEBUG Processing 325/853 atomic regions from SNP 97488 to 98088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,335 DEBUG Processing 100/644 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,446 DEBUG Processing 274/471 atomic regions from SNP 81984 to 82584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,536 DEBUG Processing 227/1128 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,538 DEBUG Processing 325/893 atomic regions from SNP 97228 to 97828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,558 DEBUG Processing 200/1017 atomic regions from SNP 59899 to 60500 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,567 DEBUG Processing 326/853 atomic regions from SNP 97788 to 98388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,586 DEBUG Processing 101/644 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,666 DEBUG Processing 275/471 atomic regions from SNP 82284 to 82884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:39,779 DEBUG Processing 326/893 atomic regions from SNP 97528 to 98128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,804 DEBUG Processing 327/853 atomic regions from SNP 98088 to 98688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,811 DEBUG Processing 228/1128 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,817 DEBUG Processing 201/1017 atomic regions from SNP 60200 to 60801 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,839 DEBUG Processing 102/644 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,884 DEBUG Processing 276/471 atomic regions from SNP 82584 to 83184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,012 DEBUG Processing 327/893 atomic regions from SNP 97828 to 98428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,041 DEBUG Processing 328/853 atomic regions from SNP 98388 to 98988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,069 DEBUG Processing 202/1017 atomic regions from SNP 60501 to 61102 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,080 DEBUG Processing 103/644 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,082 DEBUG Processing 229/1128 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,108 DEBUG Processing 277/471 atomic regions from SNP 82884 to 83484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,247 DEBUG Processing 328/893 atomic regions from SNP 98128 to 98728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,271 DEBUG Processing 329/853 atomic regions from SNP 98688 to 99288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,302 DEBUG Processing 104/644 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,323 DEBUG Processing 203/1017 atomic regions from SNP 60802 to 61403 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,330 DEBUG Processing 278/471 atomic regions from SNP 83184 to 83784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,349 DEBUG Processing 230/1128 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,481 DEBUG Processing 329/893 atomic regions from SNP 98428 to 99028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,501 DEBUG Processing 330/853 atomic regions from SNP 98988 to 99588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,525 DEBUG Processing 105/644 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,554 DEBUG Processing 279/471 atomic regions from SNP 83484 to 84084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,585 DEBUG Processing 204/1017 atomic regions from SNP 61103 to 61704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,642 DEBUG Processing 231/1128 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,712 DEBUG Processing 330/893 atomic regions from SNP 98728 to 99328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,730 DEBUG Processing 331/853 atomic regions from SNP 99288 to 99888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,749 DEBUG Processing 106/644 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,779 DEBUG Processing 280/471 atomic regions from SNP 83784 to 84384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:40,866 DEBUG Processing 205/1017 atomic regions from SNP 61404 to 62005 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,925 DEBUG Processing 232/1128 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,946 DEBUG Processing 331/893 atomic regions from SNP 99028 to 99628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,958 DEBUG Processing 332/853 atomic regions from SNP 99588 to 100188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,978 DEBUG Processing 107/644 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,009 DEBUG Processing 281/471 atomic regions from SNP 84084 to 84684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,112 DEBUG Processing 206/1017 atomic regions from SNP 61705 to 62306 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,183 DEBUG Processing 332/893 atomic regions from SNP 99328 to 99928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,191 DEBUG Processing 233/1128 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,192 DEBUG Processing 333/853 atomic regions from SNP 99888 to 100488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,232 DEBUG Processing 108/644 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,233 DEBUG Processing 282/471 atomic regions from SNP 84384 to 84984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,377 DEBUG Processing 207/1017 atomic regions from SNP 62006 to 62607 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,419 DEBUG Processing 333/893 atomic regions from SNP 99628 to 100228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,425 DEBUG Processing 334/853 atomic regions from SNP 100188 to 100788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,461 DEBUG Processing 234/1128 atomic regions from SNP 70133 to 70734 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,464 DEBUG Processing 283/471 atomic regions from SNP 84684 to 85284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,481 DEBUG Processing 109/644 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,624 DEBUG Processing 208/1017 atomic regions from SNP 62307 to 62908 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,652 DEBUG Processing 334/893 atomic regions from SNP 99928 to 100528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,655 DEBUG Processing 335/853 atomic regions from SNP 100488 to 101088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,695 DEBUG Processing 284/471 atomic regions from SNP 84984 to 85584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,719 DEBUG Processing 110/644 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,730 DEBUG Processing 235/1128 atomic regions from SNP 70434 to 71035 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,871 DEBUG Processing 209/1017 atomic regions from SNP 62608 to 63209 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,882 DEBUG Processing 335/893 atomic regions from SNP 100228 to 100828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,884 DEBUG Processing 336/853 atomic regions from SNP 100788 to 101388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,920 DEBUG Processing 285/471 atomic regions from SNP 85284 to 85884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:41,950 DEBUG Processing 111/644 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,005 DEBUG Processing 236/1128 atomic regions from SNP 70735 to 71336 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,113 DEBUG Processing 337/853 atomic regions from SNP 101088 to 101688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,116 DEBUG Processing 336/893 atomic regions from SNP 100528 to 101128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,122 DEBUG Processing 210/1017 atomic regions from SNP 62909 to 63510 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,144 DEBUG Processing 286/471 atomic regions from SNP 85584 to 86184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,176 DEBUG Processing 112/644 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,284 DEBUG Processing 237/1128 atomic regions from SNP 71036 to 71637 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,345 DEBUG Processing 338/853 atomic regions from SNP 101388 to 101988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,349 DEBUG Processing 337/893 atomic regions from SNP 100828 to 101428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,369 DEBUG Processing 287/471 atomic regions from SNP 85884 to 86484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,389 DEBUG Processing 211/1017 atomic regions from SNP 63210 to 63811 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,403 DEBUG Processing 113/644 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,579 DEBUG Processing 238/1128 atomic regions from SNP 71337 to 71938 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,580 DEBUG Processing 339/853 atomic regions from SNP 101688 to 102288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,588 DEBUG Processing 338/893 atomic regions from SNP 101128 to 101728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,604 DEBUG Processing 288/471 atomic regions from SNP 86184 to 86784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,635 DEBUG Processing 114/644 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,675 DEBUG Processing 212/1017 atomic regions from SNP 63511 to 64112 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,819 DEBUG Processing 340/853 atomic regions from SNP 101988 to 102588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,843 DEBUG Processing 289/471 atomic regions from SNP 86484 to 87084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:42,853 DEBUG Processing 339/893 atomic regions from SNP 101428 to 102028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,858 DEBUG Processing 239/1128 atomic regions from SNP 71638 to 72239 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,869 DEBUG Processing 115/644 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,961 DEBUG Processing 213/1017 atomic regions from SNP 63812 to 64413 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,048 DEBUG Processing 341/853 atomic regions from SNP 102288 to 102888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,078 DEBUG Processing 290/471 atomic regions from SNP 86784 to 87384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,097 DEBUG Processing 116/644 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,104 DEBUG Processing 340/893 atomic regions from SNP 101728 to 102328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,134 DEBUG Processing 240/1128 atomic regions from SNP 71939 to 72540 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,243 DEBUG Processing 214/1017 atomic regions from SNP 64113 to 64714 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,272 DEBUG Processing 342/853 atomic regions from SNP 102588 to 103188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,309 DEBUG Processing 291/471 atomic regions from SNP 87084 to 87684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,324 DEBUG Processing 117/644 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,343 DEBUG Processing 341/893 atomic regions from SNP 102028 to 102628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,411 DEBUG Processing 241/1128 atomic regions from SNP 72240 to 72841 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,492 DEBUG Processing 343/853 atomic regions from SNP 102888 to 103488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,522 DEBUG Processing 215/1017 atomic regions from SNP 64414 to 65015 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,531 DEBUG Processing 292/471 atomic regions from SNP 87384 to 87984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,548 DEBUG Processing 118/644 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,579 DEBUG Processing 342/893 atomic regions from SNP 102328 to 102928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,683 DEBUG Processing 242/1128 atomic regions from SNP 72541 to 73142 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,723 DEBUG Processing 344/853 atomic regions from SNP 103188 to 103788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,752 DEBUG Processing 293/471 atomic regions from SNP 87684 to 88284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,772 DEBUG Processing 119/644 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,774 DEBUG Processing 216/1017 atomic regions from SNP 64715 to 65316 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,809 DEBUG Processing 343/893 atomic regions from SNP 102628 to 103228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,953 DEBUG Processing 243/1128 atomic regions from SNP 72842 to 73443 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,956 DEBUG Processing 345/853 atomic regions from SNP 103488 to 104088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,975 DEBUG Processing 294/471 atomic regions from SNP 87984 to 88584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:43,997 DEBUG Processing 120/644 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,028 DEBUG Processing 217/1017 atomic regions from SNP 65016 to 65617 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,041 DEBUG Processing 344/893 atomic regions from SNP 102928 to 103528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,206 DEBUG Processing 346/853 atomic regions from SNP 103788 to 104388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,207 DEBUG Processing 295/471 atomic regions from SNP 88284 to 88884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,226 DEBUG Processing 121/644 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,233 DEBUG Processing 244/1128 atomic regions from SNP 73143 to 73744 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,274 DEBUG Processing 345/893 atomic regions from SNP 103228 to 103828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,283 DEBUG Processing 218/1017 atomic regions from SNP 65317 to 65918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,438 DEBUG Processing 296/471 atomic regions from SNP 88584 to 89184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,451 DEBUG Processing 347/853 atomic regions from SNP 104088 to 104688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,453 DEBUG Processing 122/644 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,509 DEBUG Processing 245/1128 atomic regions from SNP 73444 to 74045 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,514 DEBUG Processing 346/893 atomic regions from SNP 103528 to 104128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,539 DEBUG Processing 219/1017 atomic regions from SNP 65618 to 66218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,668 DEBUG Processing 297/471 atomic regions from SNP 88884 to 89484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,679 DEBUG Processing 123/644 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,686 DEBUG Processing 348/853 atomic regions from SNP 104388 to 104988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,768 DEBUG Processing 347/893 atomic regions from SNP 103828 to 104428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,797 DEBUG Processing 246/1128 atomic regions from SNP 73745 to 74346 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,800 DEBUG Processing 220/1017 atomic regions from SNP 65918 to 66518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,885 DEBUG Processing 298/471 atomic regions from SNP 89184 to 89784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:44,901 DEBUG Processing 124/644 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,914 DEBUG Processing 349/853 atomic regions from SNP 104688 to 105288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,012 DEBUG Processing 348/893 atomic regions from SNP 104128 to 104728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,062 DEBUG Processing 221/1017 atomic regions from SNP 66218 to 66818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,071 DEBUG Processing 247/1128 atomic regions from SNP 74046 to 74647 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,107 DEBUG Processing 299/471 atomic regions from SNP 89484 to 90084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,121 DEBUG Processing 125/644 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,147 DEBUG Processing 350/853 atomic regions from SNP 104988 to 105588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,265 DEBUG Processing 349/893 atomic regions from SNP 104428 to 105028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,324 DEBUG Processing 222/1017 atomic regions from SNP 66518 to 67118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,331 DEBUG Processing 300/471 atomic regions from SNP 89784 to 90384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,343 DEBUG Processing 248/1128 atomic regions from SNP 74347 to 74948 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,347 DEBUG Processing 126/644 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,394 DEBUG Processing 351/853 atomic regions from SNP 105288 to 105888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,526 DEBUG Processing 350/893 atomic regions from SNP 104728 to 105328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,563 DEBUG Processing 301/471 atomic regions from SNP 90084 to 90684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,578 DEBUG Processing 127/644 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,589 DEBUG Processing 223/1017 atomic regions from SNP 66818 to 67418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,614 DEBUG Processing 249/1128 atomic regions from SNP 74648 to 75249 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,637 DEBUG Processing 352/853 atomic regions from SNP 105588 to 106188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,757 DEBUG Processing 351/893 atomic regions from SNP 105028 to 105628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,790 DEBUG Processing 302/471 atomic regions from SNP 90384 to 90984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:45,815 DEBUG Processing 128/644 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,855 DEBUG Processing 224/1017 atomic regions from SNP 67118 to 67718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,884 DEBUG Processing 250/1128 atomic regions from SNP 74949 to 75550 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,894 DEBUG Processing 353/853 atomic regions from SNP 105888 to 106488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,989 DEBUG Processing 352/893 atomic regions from SNP 105328 to 105928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,013 DEBUG Processing 303/471 atomic regions from SNP 90684 to 91284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,050 DEBUG Processing 129/644 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,117 DEBUG Processing 225/1017 atomic regions from SNP 67418 to 68018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,130 DEBUG Processing 354/853 atomic regions from SNP 106188 to 106788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,154 DEBUG Processing 251/1128 atomic regions from SNP 75250 to 75851 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,220 DEBUG Processing 353/893 atomic regions from SNP 105628 to 106228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,236 DEBUG Processing 304/471 atomic regions from SNP 90984 to 91584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,281 DEBUG Processing 130/644 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,363 DEBUG Processing 355/853 atomic regions from SNP 106488 to 107088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,380 DEBUG Processing 226/1017 atomic regions from SNP 67718 to 68318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,428 DEBUG Processing 252/1128 atomic regions from SNP 75551 to 76152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,455 DEBUG Processing 354/893 atomic regions from SNP 105928 to 106528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,463 DEBUG Processing 305/471 atomic regions from SNP 91284 to 91884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,506 DEBUG Processing 131/644 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,599 DEBUG Processing 356/853 atomic regions from SNP 106788 to 107388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,642 DEBUG Processing 227/1017 atomic regions from SNP 68018 to 68618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,691 DEBUG Processing 306/471 atomic regions from SNP 91584 to 92184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,693 DEBUG Processing 355/893 atomic regions from SNP 106228 to 106828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,704 DEBUG Processing 253/1128 atomic regions from SNP 75852 to 76453 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,732 DEBUG Processing 132/644 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,828 DEBUG Processing 357/853 atomic regions from SNP 107088 to 107688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,906 DEBUG Processing 228/1017 atomic regions from SNP 68318 to 68918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,917 DEBUG Processing 307/471 atomic regions from SNP 91884 to 92484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:46,929 DEBUG Processing 356/893 atomic regions from SNP 106528 to 107128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,962 DEBUG Processing 133/644 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,974 DEBUG Processing 254/1128 atomic regions from SNP 76153 to 76754 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,057 DEBUG Processing 358/853 atomic regions from SNP 107388 to 107988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,149 DEBUG Processing 308/471 atomic regions from SNP 92184 to 92784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,166 DEBUG Processing 357/893 atomic regions from SNP 106828 to 107428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,171 DEBUG Processing 229/1017 atomic regions from SNP 68618 to 69218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,198 DEBUG Processing 134/644 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,241 DEBUG Processing 255/1128 atomic regions from SNP 76454 to 77055 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,282 DEBUG Processing 359/853 atomic regions from SNP 107688 to 108288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,382 DEBUG Processing 309/471 atomic regions from SNP 92484 to 93084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,404 DEBUG Processing 358/893 atomic regions from SNP 107128 to 107728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,437 DEBUG Processing 135/644 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,446 DEBUG Processing 230/1017 atomic regions from SNP 68918 to 69518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,506 DEBUG Processing 256/1128 atomic regions from SNP 76755 to 77356 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,507 DEBUG Processing 360/853 atomic regions from SNP 107988 to 108588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,611 DEBUG Processing 310/471 atomic regions from SNP 92784 to 93384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,662 DEBUG Processing 359/893 atomic regions from SNP 107428 to 108028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,678 DEBUG Processing 136/644 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,723 DEBUG Processing 231/1017 atomic regions from SNP 69218 to 69818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,736 DEBUG Processing 361/853 atomic regions from SNP 108288 to 108888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,772 DEBUG Processing 257/1128 atomic regions from SNP 77056 to 77657 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,834 DEBUG Processing 311/471 atomic regions from SNP 93084 to 93684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:47,905 DEBUG Processing 360/893 atomic regions from SNP 107728 to 108328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,916 DEBUG Processing 137/644 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,973 DEBUG Processing 362/853 atomic regions from SNP 108588 to 109188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,001 DEBUG Processing 232/1017 atomic regions from SNP 69518 to 70118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,037 DEBUG Processing 258/1128 atomic regions from SNP 77357 to 77958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,066 DEBUG Processing 312/471 atomic regions from SNP 93384 to 93984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,150 DEBUG Processing 361/893 atomic regions from SNP 108028 to 108628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,154 DEBUG Processing 138/644 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,229 DEBUG Processing 363/853 atomic regions from SNP 108888 to 109488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,279 DEBUG Processing 233/1017 atomic regions from SNP 69818 to 70418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,306 DEBUG Processing 259/1128 atomic regions from SNP 77658 to 78259 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,310 DEBUG Processing 313/471 atomic regions from SNP 93684 to 94284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,384 DEBUG Processing 139/644 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,391 DEBUG Processing 362/893 atomic regions from SNP 108328 to 108928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,464 DEBUG Processing 364/853 atomic regions from SNP 109188 to 109788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,544 DEBUG Processing 234/1017 atomic regions from SNP 70118 to 70718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,561 DEBUG Processing 314/471 atomic regions from SNP 93984 to 94584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,577 DEBUG Processing 260/1128 atomic regions from SNP 77959 to 78560 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,611 DEBUG Processing 140/644 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,630 DEBUG Processing 363/893 atomic regions from SNP 108628 to 109228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,693 DEBUG Processing 365/853 atomic regions from SNP 109488 to 110088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,804 DEBUG Processing 235/1017 atomic regions from SNP 70418 to 71018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,820 DEBUG Processing 315/471 atomic regions from SNP 94284 to 94884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:48,843 DEBUG Processing 261/1128 atomic regions from SNP 78260 to 78861 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,846 DEBUG Processing 141/644 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,871 DEBUG Processing 364/893 atomic regions from SNP 108928 to 109528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,952 DEBUG Processing 366/853 atomic regions from SNP 109788 to 110388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,063 DEBUG Processing 316/471 atomic regions from SNP 94584 to 95184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,066 DEBUG Processing 236/1017 atomic regions from SNP 70718 to 71318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,082 DEBUG Processing 142/644 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,113 DEBUG Processing 365/893 atomic regions from SNP 109228 to 109828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,117 DEBUG Processing 262/1128 atomic regions from SNP 78561 to 79162 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,183 DEBUG Processing 367/853 atomic regions from SNP 110088 to 110688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,302 DEBUG Processing 317/471 atomic regions from SNP 94884 to 95484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,315 DEBUG Processing 143/644 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,328 DEBUG Processing 237/1017 atomic regions from SNP 71018 to 71618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,354 DEBUG Processing 366/893 atomic regions from SNP 109528 to 110128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,393 DEBUG Processing 263/1128 atomic regions from SNP 78862 to 79463 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,418 DEBUG Processing 368/853 atomic regions from SNP 110388 to 110988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,543 DEBUG Processing 318/471 atomic regions from SNP 95184 to 95784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,544 DEBUG Processing 144/644 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,592 DEBUG Processing 238/1017 atomic regions from SNP 71318 to 71918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,603 DEBUG Processing 367/893 atomic regions from SNP 109828 to 110428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,663 DEBUG Processing 369/853 atomic regions from SNP 110688 to 111288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,675 DEBUG Processing 264/1128 atomic regions from SNP 79163 to 79764 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,771 DEBUG Processing 145/644 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,787 DEBUG Processing 319/471 atomic regions from SNP 95484 to 96084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:49,853 DEBUG Processing 239/1017 atomic regions from SNP 71618 to 72218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,866 DEBUG Processing 368/893 atomic regions from SNP 110128 to 110728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,905 DEBUG Processing 370/853 atomic regions from SNP 110988 to 111588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,950 DEBUG Processing 265/1128 atomic regions from SNP 79464 to 80065 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,995 DEBUG Processing 146/644 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,010 DEBUG Processing 320/471 atomic regions from SNP 95784 to 96384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,110 DEBUG Processing 240/1017 atomic regions from SNP 71918 to 72518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,121 DEBUG Processing 369/893 atomic regions from SNP 110428 to 111028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,138 DEBUG Processing 371/853 atomic regions from SNP 111288 to 111888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,222 DEBUG Processing 147/644 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,222 DEBUG Processing 266/1128 atomic regions from SNP 79765 to 80366 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,236 DEBUG Processing 321/471 atomic regions from SNP 96084 to 96684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,368 DEBUG Processing 372/853 atomic regions from SNP 111588 to 112188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,372 DEBUG Processing 241/1017 atomic regions from SNP 72218 to 72818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,377 DEBUG Processing 370/893 atomic regions from SNP 110728 to 111328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,451 DEBUG Processing 148/644 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,472 DEBUG Processing 322/471 atomic regions from SNP 96384 to 96984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,500 DEBUG Processing 267/1128 atomic regions from SNP 80066 to 80667 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,596 DEBUG Processing 373/853 atomic regions from SNP 111888 to 112488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,607 DEBUG Processing 371/893 atomic regions from SNP 111028 to 111628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,629 DEBUG Processing 242/1017 atomic regions from SNP 72518 to 73118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,681 DEBUG Processing 149/644 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,704 DEBUG Processing 323/471 atomic regions from SNP 96684 to 97284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:50,781 DEBUG Processing 268/1128 atomic regions from SNP 80367 to 80968 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,831 DEBUG Processing 374/853 atomic regions from SNP 112188 to 112788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,841 DEBUG Processing 372/893 atomic regions from SNP 111328 to 111928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,888 DEBUG Processing 243/1017 atomic regions from SNP 72818 to 73418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,906 DEBUG Processing 150/644 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,960 DEBUG Processing 324/471 atomic regions from SNP 96984 to 97584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,056 DEBUG Processing 269/1128 atomic regions from SNP 80668 to 81269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,066 DEBUG Processing 375/853 atomic regions from SNP 112488 to 113088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,078 DEBUG Processing 373/893 atomic regions from SNP 111628 to 112228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,133 DEBUG Processing 151/644 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,150 DEBUG Processing 244/1017 atomic regions from SNP 73118 to 73718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,191 DEBUG Processing 325/471 atomic regions from SNP 97284 to 97884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,301 DEBUG Processing 376/853 atomic regions from SNP 112788 to 113388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,315 DEBUG Processing 374/893 atomic regions from SNP 111928 to 112528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,329 DEBUG Processing 270/1128 atomic regions from SNP 80969 to 81569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,363 DEBUG Processing 152/644 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,415 DEBUG Processing 245/1017 atomic regions from SNP 73418 to 74018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,416 DEBUG Processing 326/471 atomic regions from SNP 97584 to 98184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,535 DEBUG Processing 377/853 atomic regions from SNP 113088 to 113688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,554 DEBUG Processing 375/893 atomic regions from SNP 112228 to 112828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,594 DEBUG Processing 153/644 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,599 DEBUG Processing 271/1128 atomic regions from SNP 81269 to 81869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,643 DEBUG Processing 327/471 atomic regions from SNP 97884 to 98484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,678 DEBUG Processing 246/1017 atomic regions from SNP 73718 to 74318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,769 DEBUG Processing 378/853 atomic regions from SNP 113388 to 113988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,792 DEBUG Processing 376/893 atomic regions from SNP 112528 to 113128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,822 DEBUG Processing 154/644 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,870 DEBUG Processing 272/1128 atomic regions from SNP 81569 to 82169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,872 DEBUG Processing 328/471 atomic regions from SNP 98184 to 98784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:51,937 DEBUG Processing 247/1017 atomic regions from SNP 74018 to 74618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,003 DEBUG Processing 379/853 atomic regions from SNP 113688 to 114288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,027 DEBUG Processing 377/893 atomic regions from SNP 112828 to 113428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,047 DEBUG Processing 155/644 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,102 DEBUG Processing 329/471 atomic regions from SNP 98484 to 99084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,143 DEBUG Processing 273/1128 atomic regions from SNP 81869 to 82469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,201 DEBUG Processing 248/1017 atomic regions from SNP 74318 to 74918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,244 DEBUG Processing 380/853 atomic regions from SNP 113988 to 114588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,266 DEBUG Processing 378/893 atomic regions from SNP 113128 to 113728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,271 DEBUG Processing 156/644 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,328 DEBUG Processing 330/471 atomic regions from SNP 98784 to 99384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,409 DEBUG Processing 274/1128 atomic regions from SNP 82169 to 82769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,481 DEBUG Processing 249/1017 atomic regions from SNP 74618 to 75218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,489 DEBUG Processing 381/853 atomic regions from SNP 114288 to 114888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,501 DEBUG Processing 157/644 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,516 DEBUG Processing 379/893 atomic regions from SNP 113428 to 114028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,561 DEBUG Processing 331/471 atomic regions from SNP 99084 to 99684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,684 DEBUG Processing 275/1128 atomic regions from SNP 82469 to 83069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,739 DEBUG Processing 158/644 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,742 DEBUG Processing 382/853 atomic regions from SNP 114588 to 115188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,772 DEBUG Processing 380/893 atomic regions from SNP 113728 to 114328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,774 DEBUG Processing 250/1017 atomic regions from SNP 74918 to 75518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,800 DEBUG Processing 332/471 atomic regions from SNP 99384 to 99984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:52,952 DEBUG Processing 276/1128 atomic regions from SNP 82769 to 83369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,970 DEBUG Processing 159/644 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,991 DEBUG Processing 383/853 atomic regions from SNP 114888 to 115488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,025 DEBUG Processing 381/893 atomic regions from SNP 114028 to 114628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,030 DEBUG Processing 251/1017 atomic regions from SNP 75218 to 75818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,041 DEBUG Processing 333/471 atomic regions from SNP 99684 to 100284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,195 DEBUG Processing 160/644 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,223 DEBUG Processing 277/1128 atomic regions from SNP 83069 to 83669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,237 DEBUG Processing 384/853 atomic regions from SNP 115188 to 115788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,280 DEBUG Processing 382/893 atomic regions from SNP 114328 to 114928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,288 DEBUG Processing 252/1017 atomic regions from SNP 75518 to 76118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,288 DEBUG Processing 334/471 atomic regions from SNP 99984 to 100584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,419 DEBUG Processing 161/644 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,477 DEBUG Processing 385/853 atomic regions from SNP 115488 to 116088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,498 DEBUG Processing 278/1128 atomic regions from SNP 83369 to 83969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,535 DEBUG Processing 383/893 atomic regions from SNP 114628 to 115228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,538 DEBUG Processing 335/471 atomic regions from SNP 100284 to 100884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,547 DEBUG Processing 253/1017 atomic regions from SNP 75818 to 76418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,639 DEBUG Processing 162/644 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,708 DEBUG Processing 386/853 atomic regions from SNP 115788 to 116388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,773 DEBUG Processing 279/1128 atomic regions from SNP 83669 to 84269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,786 DEBUG Processing 384/893 atomic regions from SNP 114928 to 115528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,787 DEBUG Processing 336/471 atomic regions from SNP 100584 to 101184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:53,813 DEBUG Processing 254/1017 atomic regions from SNP 76118 to 76718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,866 DEBUG Processing 163/644 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,939 DEBUG Processing 387/853 atomic regions from SNP 116088 to 116688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,030 DEBUG Processing 337/471 atomic regions from SNP 100884 to 101484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,041 DEBUG Processing 385/893 atomic regions from SNP 115228 to 115828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,055 DEBUG Processing 280/1128 atomic regions from SNP 83969 to 84569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,079 DEBUG Processing 255/1017 atomic regions from SNP 76418 to 77018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,098 DEBUG Processing 164/644 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,169 DEBUG Processing 388/853 atomic regions from SNP 116388 to 116988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,265 DEBUG Processing 338/471 atomic regions from SNP 101184 to 101784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,285 DEBUG Processing 386/893 atomic regions from SNP 115528 to 116128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,336 DEBUG Processing 165/644 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,338 DEBUG Processing 281/1128 atomic regions from SNP 84269 to 84869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,344 DEBUG Processing 256/1017 atomic regions from SNP 76718 to 77318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,403 DEBUG Processing 389/853 atomic regions from SNP 116688 to 117288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,492 DEBUG Processing 339/471 atomic regions from SNP 101484 to 102084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,526 DEBUG Processing 387/893 atomic regions from SNP 115828 to 116428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,569 DEBUG Processing 166/644 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,609 DEBUG Processing 257/1017 atomic regions from SNP 77018 to 77618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,650 DEBUG Processing 390/853 atomic regions from SNP 116988 to 117588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,652 DEBUG Processing 282/1128 atomic regions from SNP 84569 to 85169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,725 DEBUG Processing 340/471 atomic regions from SNP 101784 to 102384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:54,764 DEBUG Processing 388/893 atomic regions from SNP 116128 to 116728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,798 DEBUG Processing 167/644 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,867 DEBUG Processing 258/1017 atomic regions from SNP 77318 to 77918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,893 DEBUG Processing 391/853 atomic regions from SNP 117288 to 117888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,955 DEBUG Processing 283/1128 atomic regions from SNP 84869 to 85469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,974 DEBUG Processing 341/471 atomic regions from SNP 102084 to 102684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,009 DEBUG Processing 389/893 atomic regions from SNP 116428 to 117028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,022 DEBUG Processing 168/644 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,125 DEBUG Processing 259/1017 atomic regions from SNP 77618 to 78218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,128 DEBUG Processing 392/853 atomic regions from SNP 117588 to 118188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,228 DEBUG Processing 342/471 atomic regions from SNP 102384 to 102984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,250 DEBUG Processing 284/1128 atomic regions from SNP 85169 to 85769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,253 DEBUG Processing 169/644 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,256 DEBUG Processing 390/893 atomic regions from SNP 116728 to 117328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,358 DEBUG Processing 393/853 atomic regions from SNP 117888 to 118488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,383 DEBUG Processing 260/1017 atomic regions from SNP 77918 to 78518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,478 DEBUG Processing 343/471 atomic regions from SNP 102684 to 103284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,479 DEBUG Processing 170/644 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,505 DEBUG Processing 391/893 atomic regions from SNP 117028 to 117628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,549 DEBUG Processing 285/1128 atomic regions from SNP 85469 to 86069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,612 DEBUG Processing 394/853 atomic regions from SNP 118188 to 118788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,644 DEBUG Processing 261/1017 atomic regions from SNP 78218 to 78818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,708 DEBUG Processing 171/644 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,732 DEBUG Processing 344/471 atomic regions from SNP 102984 to 103584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:55,757 DEBUG Processing 392/893 atomic regions from SNP 117328 to 117928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,856 DEBUG Processing 286/1128 atomic regions from SNP 85769 to 86369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,864 DEBUG Processing 395/853 atomic regions from SNP 118488 to 119088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,909 DEBUG Processing 262/1017 atomic regions from SNP 78518 to 79118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,933 DEBUG Processing 172/644 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,965 DEBUG Processing 345/471 atomic regions from SNP 103284 to 103884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,002 DEBUG Processing 393/893 atomic regions from SNP 117628 to 118228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,124 DEBUG Processing 396/853 atomic regions from SNP 118788 to 119388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,137 DEBUG Processing 287/1128 atomic regions from SNP 86069 to 86669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,167 DEBUG Processing 173/644 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,178 DEBUG Processing 263/1017 atomic regions from SNP 78818 to 79418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,200 DEBUG Processing 346/471 atomic regions from SNP 103584 to 104184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,248 DEBUG Processing 394/893 atomic regions from SNP 117928 to 118528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,382 DEBUG Processing 397/853 atomic regions from SNP 119088 to 119688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,400 DEBUG Processing 174/644 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,414 DEBUG Processing 288/1128 atomic regions from SNP 86369 to 86969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,435 DEBUG Processing 347/471 atomic regions from SNP 103884 to 104484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,442 DEBUG Processing 264/1017 atomic regions from SNP 79118 to 79718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,490 DEBUG Processing 395/893 atomic regions from SNP 118228 to 118828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,634 DEBUG Processing 175/644 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,644 DEBUG Processing 398/853 atomic regions from SNP 119388 to 119988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,676 DEBUG Processing 348/471 atomic regions from SNP 104184 to 104784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,701 DEBUG Processing 289/1128 atomic regions from SNP 86669 to 87269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,708 DEBUG Processing 265/1017 atomic regions from SNP 79418 to 80018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,734 DEBUG Processing 396/893 atomic regions from SNP 118528 to 119128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,858 DEBUG Processing 176/644 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,880 DEBUG Processing 399/853 atomic regions from SNP 119688 to 120288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,909 DEBUG Processing 349/471 atomic regions from SNP 104484 to 105084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:56,969 DEBUG Processing 266/1017 atomic regions from SNP 79718 to 80318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,971 DEBUG Processing 397/893 atomic regions from SNP 118828 to 119428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,977 DEBUG Processing 290/1128 atomic regions from SNP 86969 to 87569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,086 DEBUG Processing 177/644 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,117 DEBUG Processing 400/853 atomic regions from SNP 119988 to 120588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,149 DEBUG Processing 350/471 atomic regions from SNP 104784 to 105384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,212 DEBUG Processing 398/893 atomic regions from SNP 119128 to 119728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,227 DEBUG Processing 267/1017 atomic regions from SNP 80018 to 80618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,251 DEBUG Processing 291/1128 atomic regions from SNP 87269 to 87869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,315 DEBUG Processing 178/644 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,381 DEBUG Processing 401/853 atomic regions from SNP 120288 to 120888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,403 DEBUG Processing 351/471 atomic regions from SNP 105084 to 105684 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,449 DEBUG Processing 399/893 atomic regions from SNP 119428 to 120028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,483 DEBUG Processing 268/1017 atomic regions from SNP 80318 to 80918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,521 DEBUG Processing 292/1128 atomic regions from SNP 87569 to 88169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,547 DEBUG Processing 179/644 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,637 DEBUG Processing 402/853 atomic regions from SNP 120588 to 121188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,666 DEBUG Processing 352/471 atomic regions from SNP 105384 to 105984 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,697 DEBUG Processing 400/893 atomic regions from SNP 119728 to 120328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,740 DEBUG Processing 269/1017 atomic regions from SNP 80618 to 81218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,777 DEBUG Processing 180/644 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,794 DEBUG Processing 293/1128 atomic regions from SNP 87869 to 88469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,881 DEBUG Processing 403/853 atomic regions from SNP 120888 to 121488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,912 DEBUG Processing 353/471 atomic regions from SNP 105684 to 106284 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:57,943 DEBUG Processing 401/893 atomic regions from SNP 120028 to 120628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,998 DEBUG Processing 270/1017 atomic regions from SNP 80918 to 81518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,007 DEBUG Processing 181/644 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,054 DEBUG Processing 294/1128 atomic regions from SNP 88169 to 88769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,128 DEBUG Processing 404/853 atomic regions from SNP 121188 to 121788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,175 DEBUG Processing 354/471 atomic regions from SNP 105984 to 106584 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,192 DEBUG Processing 402/893 atomic regions from SNP 120328 to 120928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,244 DEBUG Processing 182/644 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,266 DEBUG Processing 271/1017 atomic regions from SNP 81218 to 81818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,313 DEBUG Processing 295/1128 atomic regions from SNP 88469 to 89069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,370 DEBUG Processing 405/853 atomic regions from SNP 121488 to 122088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,443 DEBUG Processing 403/893 atomic regions from SNP 120628 to 121228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,454 DEBUG Processing 355/471 atomic regions from SNP 106284 to 106884 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,472 DEBUG Processing 183/644 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,521 DEBUG Processing 272/1017 atomic regions from SNP 81518 to 82118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,576 DEBUG Processing 296/1128 atomic regions from SNP 88769 to 89369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,617 DEBUG Processing 406/853 atomic regions from SNP 121788 to 122388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,689 DEBUG Processing 404/893 atomic regions from SNP 120928 to 121528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,697 DEBUG Processing 184/644 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,717 DEBUG Processing 356/471 atomic regions from SNP 106584 to 107184 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:58,775 DEBUG Processing 273/1017 atomic regions from SNP 81818 to 82418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,841 DEBUG Processing 297/1128 atomic regions from SNP 89069 to 89669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,851 DEBUG Processing 407/853 atomic regions from SNP 122088 to 122688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,926 DEBUG Processing 185/644 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,932 DEBUG Processing 405/893 atomic regions from SNP 121228 to 121828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,961 DEBUG Processing 357/471 atomic regions from SNP 106884 to 107484 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,033 DEBUG Processing 274/1017 atomic regions from SNP 82118 to 82718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,091 DEBUG Processing 408/853 atomic regions from SNP 122388 to 122988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,113 DEBUG Processing 298/1128 atomic regions from SNP 89369 to 89969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,157 DEBUG Processing 186/644 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,179 DEBUG Processing 406/893 atomic regions from SNP 121528 to 122128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,198 DEBUG Processing 358/471 atomic regions from SNP 107184 to 107784 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,292 DEBUG Processing 275/1017 atomic regions from SNP 82418 to 83018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,327 DEBUG Processing 409/853 atomic regions from SNP 122688 to 123288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,386 DEBUG Processing 187/644 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,415 DEBUG Processing 299/1128 atomic regions from SNP 89669 to 90269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,419 DEBUG Processing 407/893 atomic regions from SNP 121828 to 122428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,439 DEBUG Processing 359/471 atomic regions from SNP 107484 to 108084 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,550 DEBUG Processing 276/1017 atomic regions from SNP 82718 to 83318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,559 DEBUG Processing 410/853 atomic regions from SNP 122988 to 123588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,612 DEBUG Processing 188/644 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,661 DEBUG Processing 408/893 atomic regions from SNP 122128 to 122728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,708 DEBUG Processing 360/471 atomic regions from SNP 107784 to 108384 for chrX (subchromosome 4 of 6). 2025-01-31 09:45:59,728 DEBUG Processing 300/1128 atomic regions from SNP 89969 to 90569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,794 DEBUG Processing 411/853 atomic regions from SNP 123288 to 123888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,819 DEBUG Processing 277/1017 atomic regions from SNP 83018 to 83618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,843 DEBUG Processing 189/644 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,900 DEBUG Processing 409/893 atomic regions from SNP 122428 to 123028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,955 DEBUG Processing 361/471 atomic regions from SNP 108084 to 108684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,001 DEBUG Processing 301/1128 atomic regions from SNP 90269 to 90869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,032 DEBUG Processing 412/853 atomic regions from SNP 123588 to 124188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,079 DEBUG Processing 190/644 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,089 DEBUG Processing 278/1017 atomic regions from SNP 83318 to 83918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,143 DEBUG Processing 410/893 atomic regions from SNP 122728 to 123328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,186 DEBUG Processing 362/471 atomic regions from SNP 108384 to 108984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,263 DEBUG Processing 413/853 atomic regions from SNP 123888 to 124488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,267 DEBUG Processing 302/1128 atomic regions from SNP 90569 to 91169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,315 DEBUG Processing 191/644 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,357 DEBUG Processing 279/1017 atomic regions from SNP 83618 to 84218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,388 DEBUG Processing 411/893 atomic regions from SNP 123028 to 123628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,414 DEBUG Processing 363/471 atomic regions from SNP 108684 to 109284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,490 DEBUG Processing 414/853 atomic regions from SNP 124188 to 124788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,533 DEBUG Processing 303/1128 atomic regions from SNP 90869 to 91469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,549 DEBUG Processing 192/644 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,628 DEBUG Processing 280/1017 atomic regions from SNP 83918 to 84518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,641 DEBUG Processing 412/893 atomic regions from SNP 123328 to 123928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,657 DEBUG Processing 364/471 atomic regions from SNP 108984 to 109584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,724 DEBUG Processing 415/853 atomic regions from SNP 124488 to 125088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,782 DEBUG Processing 193/644 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,803 DEBUG Processing 304/1128 atomic regions from SNP 91169 to 91769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,892 DEBUG Processing 413/893 atomic regions from SNP 123628 to 124228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,897 DEBUG Processing 365/471 atomic regions from SNP 109284 to 109884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:00,902 DEBUG Processing 281/1017 atomic regions from SNP 84218 to 84818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,957 DEBUG Processing 416/853 atomic regions from SNP 124788 to 125388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,004 DEBUG Processing 194/644 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,071 DEBUG Processing 305/1128 atomic regions from SNP 91469 to 92069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,134 DEBUG Processing 414/893 atomic regions from SNP 123928 to 124528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,137 DEBUG Processing 366/471 atomic regions from SNP 109584 to 110184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,171 DEBUG Processing 282/1017 atomic regions from SNP 84518 to 85118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,199 DEBUG Processing 417/853 atomic regions from SNP 125088 to 125688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,238 DEBUG Processing 195/644 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,339 DEBUG Processing 306/1128 atomic regions from SNP 91769 to 92369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,377 DEBUG Processing 415/893 atomic regions from SNP 124228 to 124828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,400 DEBUG Processing 367/471 atomic regions from SNP 109884 to 110484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,439 DEBUG Processing 283/1017 atomic regions from SNP 84818 to 85418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,443 DEBUG Processing 418/853 atomic regions from SNP 125388 to 125988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,471 DEBUG Processing 196/644 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,602 DEBUG Processing 307/1128 atomic regions from SNP 92069 to 92669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,610 DEBUG Processing 416/893 atomic regions from SNP 124528 to 125128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,661 DEBUG Processing 368/471 atomic regions from SNP 110184 to 110784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,703 DEBUG Processing 419/853 atomic regions from SNP 125688 to 126288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,705 DEBUG Processing 284/1017 atomic regions from SNP 85118 to 85718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,711 DEBUG Processing 197/644 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,842 DEBUG Processing 417/893 atomic regions from SNP 124828 to 125428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,868 DEBUG Processing 308/1128 atomic regions from SNP 92369 to 92969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,900 DEBUG Processing 369/471 atomic regions from SNP 110484 to 111084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:01,952 DEBUG Processing 198/644 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,971 DEBUG Processing 420/853 atomic regions from SNP 125988 to 126588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,979 DEBUG Processing 285/1017 atomic regions from SNP 85418 to 86018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,075 DEBUG Processing 418/893 atomic regions from SNP 125128 to 125728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,136 DEBUG Processing 309/1128 atomic regions from SNP 92669 to 93269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,137 DEBUG Processing 370/471 atomic regions from SNP 110784 to 111384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,190 DEBUG Processing 199/644 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,225 DEBUG Processing 421/853 atomic regions from SNP 126288 to 126888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,245 DEBUG Processing 286/1017 atomic regions from SNP 85718 to 86318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,306 DEBUG Processing 419/893 atomic regions from SNP 125428 to 126028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,364 DEBUG Processing 371/471 atomic regions from SNP 111084 to 111684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,404 DEBUG Processing 310/1128 atomic regions from SNP 92969 to 93569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,424 DEBUG Processing 200/644 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,464 DEBUG Processing 422/853 atomic regions from SNP 126588 to 127188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,502 DEBUG Processing 287/1017 atomic regions from SNP 86018 to 86618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,547 DEBUG Processing 420/893 atomic regions from SNP 125728 to 126328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,594 DEBUG Processing 372/471 atomic regions from SNP 111384 to 111984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,663 DEBUG Processing 201/644 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,679 DEBUG Processing 311/1128 atomic regions from SNP 93269 to 93869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,703 DEBUG Processing 423/853 atomic regions from SNP 126888 to 127488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,760 DEBUG Processing 288/1017 atomic regions from SNP 86318 to 86918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,788 DEBUG Processing 421/893 atomic regions from SNP 126028 to 126628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,828 DEBUG Processing 373/471 atomic regions from SNP 111684 to 112284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:02,905 DEBUG Processing 202/644 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,940 DEBUG Processing 424/853 atomic regions from SNP 127188 to 127788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,957 DEBUG Processing 312/1128 atomic regions from SNP 93569 to 94169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,022 DEBUG Processing 289/1017 atomic regions from SNP 86618 to 87218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,029 DEBUG Processing 422/893 atomic regions from SNP 126328 to 126928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,065 DEBUG Processing 374/471 atomic regions from SNP 111984 to 112584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,143 DEBUG Processing 203/644 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,172 DEBUG Processing 425/853 atomic regions from SNP 127488 to 128088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,228 DEBUG Processing 313/1128 atomic regions from SNP 93869 to 94469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,271 DEBUG Processing 423/893 atomic regions from SNP 126628 to 127228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,279 DEBUG Processing 290/1017 atomic regions from SNP 86918 to 87518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,298 DEBUG Processing 375/471 atomic regions from SNP 112284 to 112884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,376 DEBUG Processing 204/644 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,408 DEBUG Processing 426/853 atomic regions from SNP 127788 to 128388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,501 DEBUG Processing 314/1128 atomic regions from SNP 94169 to 94769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,515 DEBUG Processing 424/893 atomic regions from SNP 126928 to 127528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,535 DEBUG Processing 291/1017 atomic regions from SNP 87218 to 87818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,544 DEBUG Processing 376/471 atomic regions from SNP 112584 to 113184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,605 DEBUG Processing 205/644 atomic regions from SNP 61404 to 62005 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,638 DEBUG Processing 427/853 atomic regions from SNP 128088 to 128688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,758 DEBUG Processing 425/893 atomic regions from SNP 127228 to 127828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,775 DEBUG Processing 315/1128 atomic regions from SNP 94469 to 95069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,786 DEBUG Processing 377/471 atomic regions from SNP 112884 to 113484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:03,799 DEBUG Processing 292/1017 atomic regions from SNP 87518 to 88118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,836 DEBUG Processing 206/644 atomic regions from SNP 61705 to 62306 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,865 DEBUG Processing 428/853 atomic regions from SNP 128388 to 128988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,998 DEBUG Processing 426/893 atomic regions from SNP 127528 to 128128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,027 DEBUG Processing 378/471 atomic regions from SNP 113184 to 113784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,056 DEBUG Processing 316/1128 atomic regions from SNP 94769 to 95369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,066 DEBUG Processing 293/1017 atomic regions from SNP 87818 to 88418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,076 DEBUG Processing 207/644 atomic regions from SNP 62006 to 62607 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,102 DEBUG Processing 429/853 atomic regions from SNP 128688 to 129288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,263 DEBUG Processing 427/893 atomic regions from SNP 127828 to 128428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,264 DEBUG Processing 379/471 atomic regions from SNP 113484 to 114084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,321 DEBUG Processing 208/644 atomic regions from SNP 62307 to 62908 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,334 DEBUG Processing 317/1128 atomic regions from SNP 95069 to 95669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,343 DEBUG Processing 430/853 atomic regions from SNP 128988 to 129588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,343 DEBUG Processing 294/1017 atomic regions from SNP 88118 to 88718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,498 DEBUG Processing 380/471 atomic regions from SNP 113784 to 114384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,521 DEBUG Processing 428/893 atomic regions from SNP 128128 to 128728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,571 DEBUG Processing 209/644 atomic regions from SNP 62608 to 63209 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,587 DEBUG Processing 431/853 atomic regions from SNP 129288 to 129888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,612 DEBUG Processing 295/1017 atomic regions from SNP 88418 to 89018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,613 DEBUG Processing 318/1128 atomic regions from SNP 95369 to 95969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,738 DEBUG Processing 381/471 atomic regions from SNP 114084 to 114684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:04,778 DEBUG Processing 429/893 atomic regions from SNP 128428 to 129028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,811 DEBUG Processing 210/644 atomic regions from SNP 62909 to 63510 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,828 DEBUG Processing 432/853 atomic regions from SNP 129588 to 130188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,886 DEBUG Processing 296/1017 atomic regions from SNP 88718 to 89318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,906 DEBUG Processing 319/1128 atomic regions from SNP 95669 to 96269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,995 DEBUG Processing 382/471 atomic regions from SNP 114384 to 114984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,018 DEBUG Processing 430/893 atomic regions from SNP 128728 to 129328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,052 DEBUG Processing 211/644 atomic regions from SNP 63210 to 63811 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,065 DEBUG Processing 433/853 atomic regions from SNP 129888 to 130488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,154 DEBUG Processing 297/1017 atomic regions from SNP 89018 to 89618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,201 DEBUG Processing 320/1128 atomic regions from SNP 95969 to 96569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,250 DEBUG Processing 383/471 atomic regions from SNP 114684 to 115284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,259 DEBUG Processing 431/893 atomic regions from SNP 129028 to 129628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,285 DEBUG Processing 212/644 atomic regions from SNP 63511 to 64112 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,299 DEBUG Processing 434/853 atomic regions from SNP 130188 to 130788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,420 DEBUG Processing 298/1017 atomic regions from SNP 89318 to 89918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,488 DEBUG Processing 321/1128 atomic regions from SNP 96269 to 96869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,488 DEBUG Processing 384/471 atomic regions from SNP 114984 to 115584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,503 DEBUG Processing 432/893 atomic regions from SNP 129328 to 129928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,518 DEBUG Processing 213/644 atomic regions from SNP 63812 to 64413 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,538 DEBUG Processing 435/853 atomic regions from SNP 130488 to 131088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,680 DEBUG Processing 299/1017 atomic regions from SNP 89618 to 90218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,732 DEBUG Processing 385/471 atomic regions from SNP 115284 to 115884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,752 DEBUG Processing 214/644 atomic regions from SNP 64113 to 64714 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,757 DEBUG Processing 433/893 atomic regions from SNP 129628 to 130228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,782 DEBUG Processing 436/853 atomic regions from SNP 130788 to 131388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,788 DEBUG Processing 322/1128 atomic regions from SNP 96569 to 97169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,942 DEBUG Processing 300/1017 atomic regions from SNP 89918 to 90518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,972 DEBUG Processing 386/471 atomic regions from SNP 115584 to 116184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:05,985 DEBUG Processing 215/644 atomic regions from SNP 64414 to 65015 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,003 DEBUG Processing 434/893 atomic regions from SNP 129928 to 130528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,024 DEBUG Processing 437/853 atomic regions from SNP 131088 to 131688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,084 DEBUG Processing 323/1128 atomic regions from SNP 96869 to 97469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,204 DEBUG Processing 301/1017 atomic regions from SNP 90218 to 90818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,212 DEBUG Processing 387/471 atomic regions from SNP 115884 to 116484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,217 DEBUG Processing 216/644 atomic regions from SNP 64715 to 65316 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,250 DEBUG Processing 435/893 atomic regions from SNP 130228 to 130828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,268 DEBUG Processing 438/853 atomic regions from SNP 131388 to 131988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,382 DEBUG Processing 324/1128 atomic regions from SNP 97169 to 97769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,451 DEBUG Processing 388/471 atomic regions from SNP 116184 to 116784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,454 DEBUG Processing 217/644 atomic regions from SNP 65016 to 65617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,472 DEBUG Processing 302/1017 atomic regions from SNP 90518 to 91118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,492 DEBUG Processing 436/893 atomic regions from SNP 130528 to 131128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,509 DEBUG Processing 439/853 atomic regions from SNP 131688 to 132288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,679 DEBUG Processing 325/1128 atomic regions from SNP 97469 to 98069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,684 DEBUG Processing 389/471 atomic regions from SNP 116484 to 117084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,690 DEBUG Processing 218/644 atomic regions from SNP 65317 to 65917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,739 DEBUG Processing 437/893 atomic regions from SNP 130828 to 131428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,741 DEBUG Processing 303/1017 atomic regions from SNP 90818 to 91418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,753 DEBUG Processing 440/853 atomic regions from SNP 131988 to 132588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,916 DEBUG Processing 390/471 atomic regions from SNP 116784 to 117384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:06,940 DEBUG Processing 219/644 atomic regions from SNP 65617 to 66217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,979 DEBUG Processing 326/1128 atomic regions from SNP 97769 to 98369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,986 DEBUG Processing 438/893 atomic regions from SNP 131128 to 131728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,995 DEBUG Processing 441/853 atomic regions from SNP 132288 to 132888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,006 DEBUG Processing 304/1017 atomic regions from SNP 91118 to 91718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,139 DEBUG Processing 391/471 atomic regions from SNP 117084 to 117684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,173 DEBUG Processing 220/644 atomic regions from SNP 65917 to 66517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,224 DEBUG Processing 439/893 atomic regions from SNP 131428 to 132028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,231 DEBUG Processing 442/853 atomic regions from SNP 132588 to 133188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,269 DEBUG Processing 305/1017 atomic regions from SNP 91418 to 92018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,273 DEBUG Processing 327/1128 atomic regions from SNP 98069 to 98669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,365 DEBUG Processing 392/471 atomic regions from SNP 117384 to 117984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,404 DEBUG Processing 221/644 atomic regions from SNP 66217 to 66817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,463 DEBUG Processing 440/893 atomic regions from SNP 131728 to 132328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,466 DEBUG Processing 443/853 atomic regions from SNP 132888 to 133488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,532 DEBUG Processing 306/1017 atomic regions from SNP 91718 to 92318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,579 DEBUG Processing 328/1128 atomic regions from SNP 98369 to 98969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,597 DEBUG Processing 393/471 atomic regions from SNP 117684 to 118284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,635 DEBUG Processing 222/644 atomic regions from SNP 66517 to 67117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,694 DEBUG Processing 444/853 atomic regions from SNP 133188 to 133788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,695 DEBUG Processing 441/893 atomic regions from SNP 132028 to 132628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,798 DEBUG Processing 307/1017 atomic regions from SNP 92018 to 92618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,833 DEBUG Processing 394/471 atomic regions from SNP 117984 to 118584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:07,869 DEBUG Processing 223/644 atomic regions from SNP 66817 to 67417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,887 DEBUG Processing 329/1128 atomic regions from SNP 98669 to 99269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,925 DEBUG Processing 445/853 atomic regions from SNP 133488 to 134088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,929 DEBUG Processing 442/893 atomic regions from SNP 132328 to 132928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,064 DEBUG Processing 308/1017 atomic regions from SNP 92318 to 92918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,069 DEBUG Processing 395/471 atomic regions from SNP 118284 to 118884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,105 DEBUG Processing 224/644 atomic regions from SNP 67117 to 67717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,167 DEBUG Processing 446/853 atomic regions from SNP 133788 to 134388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,170 DEBUG Processing 443/893 atomic regions from SNP 132628 to 133228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,187 DEBUG Processing 330/1128 atomic regions from SNP 98969 to 99569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,300 DEBUG Processing 396/471 atomic regions from SNP 118584 to 119184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,343 DEBUG Processing 309/1017 atomic regions from SNP 92618 to 93218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,351 DEBUG Processing 225/644 atomic regions from SNP 67417 to 68017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,402 DEBUG Processing 447/853 atomic regions from SNP 134088 to 134688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,409 DEBUG Processing 444/893 atomic regions from SNP 132928 to 133528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,471 DEBUG Processing 331/1128 atomic regions from SNP 99269 to 99869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,526 DEBUG Processing 397/471 atomic regions from SNP 118884 to 119484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,581 DEBUG Processing 226/644 atomic regions from SNP 67717 to 68317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,603 DEBUG Processing 310/1017 atomic regions from SNP 92918 to 93518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,632 DEBUG Processing 448/853 atomic regions from SNP 134388 to 134988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,643 DEBUG Processing 445/893 atomic regions from SNP 133228 to 133828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,762 DEBUG Processing 398/471 atomic regions from SNP 119184 to 119784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:08,772 DEBUG Processing 332/1128 atomic regions from SNP 99569 to 100169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,808 DEBUG Processing 227/644 atomic regions from SNP 68017 to 68617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,857 DEBUG Processing 311/1017 atomic regions from SNP 93218 to 93818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,862 DEBUG Processing 449/853 atomic regions from SNP 134688 to 135288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,876 DEBUG Processing 446/893 atomic regions from SNP 133528 to 134128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,999 DEBUG Processing 399/471 atomic regions from SNP 119484 to 120084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,041 DEBUG Processing 228/644 atomic regions from SNP 68317 to 68917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,055 DEBUG Processing 333/1128 atomic regions from SNP 99869 to 100469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,095 DEBUG Processing 450/853 atomic regions from SNP 134988 to 135588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,111 DEBUG Processing 312/1017 atomic regions from SNP 93518 to 94118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,114 DEBUG Processing 447/893 atomic regions from SNP 133828 to 134428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,233 DEBUG Processing 400/471 atomic regions from SNP 119784 to 120384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,273 DEBUG Processing 229/644 atomic regions from SNP 68617 to 69217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,333 DEBUG Processing 451/853 atomic regions from SNP 135288 to 135888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,338 DEBUG Processing 334/1128 atomic regions from SNP 100169 to 100769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,354 DEBUG Processing 448/893 atomic regions from SNP 134128 to 134728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,378 DEBUG Processing 313/1017 atomic regions from SNP 93818 to 94418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,460 DEBUG Processing 401/471 atomic regions from SNP 120084 to 120684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,509 DEBUG Processing 230/644 atomic regions from SNP 68917 to 69517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,584 DEBUG Processing 452/853 atomic regions from SNP 135588 to 136188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,602 DEBUG Processing 449/893 atomic regions from SNP 134428 to 135028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,623 DEBUG Processing 335/1128 atomic regions from SNP 100469 to 101069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,642 DEBUG Processing 314/1017 atomic regions from SNP 94118 to 94718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,684 DEBUG Processing 402/471 atomic regions from SNP 120384 to 120984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,742 DEBUG Processing 231/644 atomic regions from SNP 69217 to 69817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,828 DEBUG Processing 453/853 atomic regions from SNP 135888 to 136488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,853 DEBUG Processing 450/893 atomic regions from SNP 134728 to 135328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,902 DEBUG Processing 315/1017 atomic regions from SNP 94418 to 95018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,903 DEBUG Processing 336/1128 atomic regions from SNP 100769 to 101369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,913 DEBUG Processing 403/471 atomic regions from SNP 120684 to 121284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:09,975 DEBUG Processing 232/644 atomic regions from SNP 69517 to 70117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,071 DEBUG Processing 454/853 atomic regions from SNP 136188 to 136788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,105 DEBUG Processing 451/893 atomic regions from SNP 135028 to 135628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,153 DEBUG Processing 404/471 atomic regions from SNP 120984 to 121584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,160 DEBUG Processing 316/1017 atomic regions from SNP 94718 to 95318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,186 DEBUG Processing 337/1128 atomic regions from SNP 101069 to 101669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,204 DEBUG Processing 233/644 atomic regions from SNP 69817 to 70417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,306 DEBUG Processing 455/853 atomic regions from SNP 136488 to 137088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,348 DEBUG Processing 452/893 atomic regions from SNP 135328 to 135928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,393 DEBUG Processing 405/471 atomic regions from SNP 121284 to 121884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,417 DEBUG Processing 317/1017 atomic regions from SNP 95018 to 95618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,433 DEBUG Processing 234/644 atomic regions from SNP 70117 to 70717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,463 DEBUG Processing 338/1128 atomic regions from SNP 101369 to 101969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,542 DEBUG Processing 456/853 atomic regions from SNP 136788 to 137388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,605 DEBUG Processing 453/893 atomic regions from SNP 135628 to 136228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,631 DEBUG Processing 406/471 atomic regions from SNP 121584 to 122184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,667 DEBUG Processing 235/644 atomic regions from SNP 70417 to 71017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,700 DEBUG Processing 318/1017 atomic regions from SNP 95318 to 95918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,739 DEBUG Processing 339/1128 atomic regions from SNP 101669 to 102269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,778 DEBUG Processing 457/853 atomic regions from SNP 137088 to 137688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,858 DEBUG Processing 407/471 atomic regions from SNP 121884 to 122484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:10,868 DEBUG Processing 454/893 atomic regions from SNP 135928 to 136528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,898 DEBUG Processing 236/644 atomic regions from SNP 70717 to 71317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,981 DEBUG Processing 319/1017 atomic regions from SNP 95618 to 96218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,018 DEBUG Processing 340/1128 atomic regions from SNP 101969 to 102569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,020 DEBUG Processing 458/853 atomic regions from SNP 137388 to 137988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,117 DEBUG Processing 408/471 atomic regions from SNP 122184 to 122784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,125 DEBUG Processing 237/644 atomic regions from SNP 71017 to 71617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,129 DEBUG Processing 455/893 atomic regions from SNP 136228 to 136828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,248 DEBUG Processing 320/1017 atomic regions from SNP 95918 to 96518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,267 DEBUG Processing 459/853 atomic regions from SNP 137688 to 138288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,303 DEBUG Processing 341/1128 atomic regions from SNP 102269 to 102869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,345 DEBUG Processing 409/471 atomic regions from SNP 122484 to 123084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,355 DEBUG Processing 238/644 atomic regions from SNP 71317 to 71917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,391 DEBUG Processing 456/893 atomic regions from SNP 136528 to 137128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,512 DEBUG Processing 460/853 atomic regions from SNP 137988 to 138588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,519 DEBUG Processing 321/1017 atomic regions from SNP 96218 to 96818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,579 DEBUG Processing 410/471 atomic regions from SNP 122784 to 123384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,582 DEBUG Processing 239/644 atomic regions from SNP 71617 to 72217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,589 DEBUG Processing 342/1128 atomic regions from SNP 102569 to 103169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,644 DEBUG Processing 457/893 atomic regions from SNP 136828 to 137428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,751 DEBUG Processing 461/853 atomic regions from SNP 138288 to 138888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,789 DEBUG Processing 322/1017 atomic regions from SNP 96518 to 97118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,818 DEBUG Processing 240/644 atomic regions from SNP 71917 to 72517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,819 DEBUG Processing 411/471 atomic regions from SNP 123084 to 123684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:11,873 DEBUG Processing 343/1128 atomic regions from SNP 102869 to 103469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,898 DEBUG Processing 458/893 atomic regions from SNP 137128 to 137728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,988 DEBUG Processing 462/853 atomic regions from SNP 138588 to 139188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,057 DEBUG Processing 241/644 atomic regions from SNP 72217 to 72817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,058 DEBUG Processing 323/1017 atomic regions from SNP 96818 to 97418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,063 DEBUG Processing 412/471 atomic regions from SNP 123384 to 123984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,152 DEBUG Processing 459/893 atomic regions from SNP 137428 to 138028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,158 DEBUG Processing 344/1128 atomic regions from SNP 103169 to 103769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,220 DEBUG Processing 463/853 atomic regions from SNP 138888 to 139488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,294 DEBUG Processing 242/644 atomic regions from SNP 72517 to 73117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,295 DEBUG Processing 413/471 atomic regions from SNP 123684 to 124284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,323 DEBUG Processing 324/1017 atomic regions from SNP 97118 to 97718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,401 DEBUG Processing 460/893 atomic regions from SNP 137728 to 138328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,447 DEBUG Processing 345/1128 atomic regions from SNP 103469 to 104069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,453 DEBUG Processing 464/853 atomic regions from SNP 139188 to 139788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,520 DEBUG Processing 414/471 atomic regions from SNP 123984 to 124584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,527 DEBUG Processing 243/644 atomic regions from SNP 72817 to 73417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,593 DEBUG Processing 325/1017 atomic regions from SNP 97418 to 98018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,642 DEBUG Processing 461/893 atomic regions from SNP 138028 to 138628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,691 DEBUG Processing 465/853 atomic regions from SNP 139488 to 140088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,748 DEBUG Processing 415/471 atomic regions from SNP 124284 to 124884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:12,753 DEBUG Processing 346/1128 atomic regions from SNP 103769 to 104369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,780 DEBUG Processing 244/644 atomic regions from SNP 73117 to 73717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,857 DEBUG Processing 326/1017 atomic regions from SNP 97718 to 98318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,879 DEBUG Processing 462/893 atomic regions from SNP 138328 to 138928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,931 DEBUG Processing 466/853 atomic regions from SNP 139788 to 140388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,980 DEBUG Processing 416/471 atomic regions from SNP 124584 to 125184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,038 DEBUG Processing 245/644 atomic regions from SNP 73417 to 74017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,053 DEBUG Processing 347/1128 atomic regions from SNP 104069 to 104669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,118 DEBUG Processing 327/1017 atomic regions from SNP 98018 to 98618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,136 DEBUG Processing 463/893 atomic regions from SNP 138628 to 139228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,165 DEBUG Processing 467/853 atomic regions from SNP 140088 to 140688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,212 DEBUG Processing 417/471 atomic regions from SNP 124884 to 125484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,282 DEBUG Processing 246/644 atomic regions from SNP 73717 to 74317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,354 DEBUG Processing 348/1128 atomic regions from SNP 104369 to 104969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,375 DEBUG Processing 328/1017 atomic regions from SNP 98318 to 98918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,399 DEBUG Processing 468/853 atomic regions from SNP 140388 to 140988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,401 DEBUG Processing 464/893 atomic regions from SNP 138928 to 139528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,444 DEBUG Processing 418/471 atomic regions from SNP 125184 to 125784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,516 DEBUG Processing 247/644 atomic regions from SNP 74017 to 74617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,633 DEBUG Processing 329/1017 atomic regions from SNP 98618 to 99218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,641 DEBUG Processing 469/853 atomic regions from SNP 140688 to 141288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,653 DEBUG Processing 349/1128 atomic regions from SNP 104669 to 105269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,672 DEBUG Processing 465/893 atomic regions from SNP 139228 to 139828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,679 DEBUG Processing 419/471 atomic regions from SNP 125484 to 126084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,748 DEBUG Processing 248/644 atomic regions from SNP 74317 to 74917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,882 DEBUG Processing 470/853 atomic regions from SNP 140988 to 141588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,898 DEBUG Processing 330/1017 atomic regions from SNP 98918 to 99518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,921 DEBUG Processing 420/471 atomic regions from SNP 125784 to 126384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:13,932 DEBUG Processing 350/1128 atomic regions from SNP 104969 to 105569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,943 DEBUG Processing 466/893 atomic regions from SNP 139528 to 140128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,979 DEBUG Processing 249/644 atomic regions from SNP 74617 to 75217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,115 DEBUG Processing 471/853 atomic regions from SNP 141288 to 141888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,151 DEBUG Processing 421/471 atomic regions from SNP 126084 to 126684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,159 DEBUG Processing 331/1017 atomic regions from SNP 99218 to 99818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,205 DEBUG Processing 351/1128 atomic regions from SNP 105269 to 105869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,212 DEBUG Processing 467/893 atomic regions from SNP 139828 to 140428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,214 DEBUG Processing 250/644 atomic regions from SNP 74917 to 75517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,347 DEBUG Processing 472/853 atomic regions from SNP 141588 to 142188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,378 DEBUG Processing 422/471 atomic regions from SNP 126384 to 126984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,421 DEBUG Processing 332/1017 atomic regions from SNP 99518 to 100118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,449 DEBUG Processing 251/644 atomic regions from SNP 75217 to 75817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,459 DEBUG Processing 468/893 atomic regions from SNP 140128 to 140728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,475 DEBUG Processing 352/1128 atomic regions from SNP 105569 to 106169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,574 DEBUG Processing 473/853 atomic regions from SNP 141888 to 142488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,601 DEBUG Processing 423/471 atomic regions from SNP 126684 to 127284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,681 DEBUG Processing 333/1017 atomic regions from SNP 99818 to 100418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,705 DEBUG Processing 252/644 atomic regions from SNP 75517 to 76117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,719 DEBUG Processing 469/893 atomic regions from SNP 140428 to 141028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,745 DEBUG Processing 353/1128 atomic regions from SNP 105869 to 106469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,809 DEBUG Processing 474/853 atomic regions from SNP 142188 to 142788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,822 DEBUG Processing 424/471 atomic regions from SNP 126984 to 127584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:14,939 DEBUG Processing 253/644 atomic regions from SNP 75817 to 76417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,954 DEBUG Processing 334/1017 atomic regions from SNP 100118 to 100718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,974 DEBUG Processing 470/893 atomic regions from SNP 140728 to 141328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,038 DEBUG Processing 354/1128 atomic regions from SNP 106169 to 106769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,044 DEBUG Processing 475/853 atomic regions from SNP 142488 to 143088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,051 DEBUG Processing 425/471 atomic regions from SNP 127284 to 127884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,172 DEBUG Processing 254/644 atomic regions from SNP 76117 to 76717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,215 DEBUG Processing 335/1017 atomic regions from SNP 100418 to 101018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,233 DEBUG Processing 471/893 atomic regions from SNP 141028 to 141628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,282 DEBUG Processing 476/853 atomic regions from SNP 142788 to 143388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,286 DEBUG Processing 426/471 atomic regions from SNP 127584 to 128184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,329 DEBUG Processing 355/1128 atomic regions from SNP 106469 to 107069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,403 DEBUG Processing 255/644 atomic regions from SNP 76417 to 77017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,470 DEBUG Processing 472/893 atomic regions from SNP 141328 to 141928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,479 DEBUG Processing 336/1017 atomic regions from SNP 100718 to 101318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,516 DEBUG Processing 427/471 atomic regions from SNP 127884 to 128484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,517 DEBUG Processing 477/853 atomic regions from SNP 143088 to 143688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,601 DEBUG Processing 356/1128 atomic regions from SNP 106769 to 107369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,638 DEBUG Processing 256/644 atomic regions from SNP 76717 to 77317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,703 DEBUG Processing 473/893 atomic regions from SNP 141628 to 142228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,739 DEBUG Processing 337/1017 atomic regions from SNP 101018 to 101618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,743 DEBUG Processing 428/471 atomic regions from SNP 128184 to 128784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,749 DEBUG Processing 478/853 atomic regions from SNP 143388 to 143988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,872 DEBUG Processing 257/644 atomic regions from SNP 77017 to 77617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,906 DEBUG Processing 357/1128 atomic regions from SNP 107069 to 107669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,938 DEBUG Processing 474/893 atomic regions from SNP 141928 to 142528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,968 DEBUG Processing 429/471 atomic regions from SNP 128484 to 129084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:15,978 DEBUG Processing 479/853 atomic regions from SNP 143688 to 144288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,994 DEBUG Processing 338/1017 atomic regions from SNP 101318 to 101918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,107 DEBUG Processing 258/644 atomic regions from SNP 77317 to 77917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,202 DEBUG Processing 475/893 atomic regions from SNP 142228 to 142828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,204 DEBUG Processing 430/471 atomic regions from SNP 128784 to 129384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,216 DEBUG Processing 480/853 atomic regions from SNP 143988 to 144588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,220 DEBUG Processing 358/1128 atomic regions from SNP 107369 to 107969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,257 DEBUG Processing 339/1017 atomic regions from SNP 101618 to 102218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,334 DEBUG Processing 259/644 atomic regions from SNP 77617 to 78217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,435 DEBUG Processing 431/471 atomic regions from SNP 129084 to 129684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,455 DEBUG Processing 481/853 atomic regions from SNP 144288 to 144888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,461 DEBUG Processing 476/893 atomic regions from SNP 142528 to 143128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,505 DEBUG Processing 359/1128 atomic regions from SNP 107669 to 108269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,518 DEBUG Processing 340/1017 atomic regions from SNP 101918 to 102518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,564 DEBUG Processing 260/644 atomic regions from SNP 77917 to 78517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,662 DEBUG Processing 432/471 atomic regions from SNP 129384 to 129984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,688 DEBUG Processing 482/853 atomic regions from SNP 144588 to 145188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,732 DEBUG Processing 477/893 atomic regions from SNP 142828 to 143428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,776 DEBUG Processing 341/1017 atomic regions from SNP 102218 to 102818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,784 DEBUG Processing 360/1128 atomic regions from SNP 107969 to 108569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,792 DEBUG Processing 261/644 atomic regions from SNP 78217 to 78817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,883 DEBUG Processing 433/471 atomic regions from SNP 129684 to 130284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:16,917 DEBUG Processing 483/853 atomic regions from SNP 144888 to 145488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,001 DEBUG Processing 478/893 atomic regions from SNP 143128 to 143728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,024 DEBUG Processing 262/644 atomic regions from SNP 78517 to 79117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,032 DEBUG Processing 342/1017 atomic regions from SNP 102518 to 103118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,079 DEBUG Processing 361/1128 atomic regions from SNP 108269 to 108869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,110 DEBUG Processing 434/471 atomic regions from SNP 129984 to 130584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,168 DEBUG Processing 484/853 atomic regions from SNP 145188 to 145788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,256 DEBUG Processing 263/644 atomic regions from SNP 78817 to 79417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,271 DEBUG Processing 479/893 atomic regions from SNP 143428 to 144028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,298 DEBUG Processing 343/1017 atomic regions from SNP 102818 to 103418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,346 DEBUG Processing 435/471 atomic regions from SNP 130284 to 130884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,350 DEBUG Processing 362/1128 atomic regions from SNP 108569 to 109169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,413 DEBUG Processing 485/853 atomic regions from SNP 145488 to 146088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,487 DEBUG Processing 264/644 atomic regions from SNP 79117 to 79717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,539 DEBUG Processing 480/893 atomic regions from SNP 143728 to 144328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,560 DEBUG Processing 344/1017 atomic regions from SNP 103118 to 103718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,583 DEBUG Processing 436/471 atomic regions from SNP 130584 to 131184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,627 DEBUG Processing 363/1128 atomic regions from SNP 108869 to 109469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,656 DEBUG Processing 486/853 atomic regions from SNP 145788 to 146388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,717 DEBUG Processing 265/644 atomic regions from SNP 79417 to 80017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,805 DEBUG Processing 481/893 atomic regions from SNP 144028 to 144628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,817 DEBUG Processing 437/471 atomic regions from SNP 130884 to 131484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:17,817 DEBUG Processing 345/1017 atomic regions from SNP 103418 to 104018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,898 DEBUG Processing 487/853 atomic regions from SNP 146088 to 146688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,910 DEBUG Processing 364/1128 atomic regions from SNP 109169 to 109769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,948 DEBUG Processing 266/644 atomic regions from SNP 79717 to 80317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,040 DEBUG Processing 438/471 atomic regions from SNP 131184 to 131784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,067 DEBUG Processing 346/1017 atomic regions from SNP 103718 to 104318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,069 DEBUG Processing 482/893 atomic regions from SNP 144328 to 144928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,141 DEBUG Processing 488/853 atomic regions from SNP 146388 to 146988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,185 DEBUG Processing 267/644 atomic regions from SNP 80017 to 80617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,189 DEBUG Processing 365/1128 atomic regions from SNP 109469 to 110069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,269 DEBUG Processing 439/471 atomic regions from SNP 131484 to 132084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,320 DEBUG Processing 347/1017 atomic regions from SNP 104018 to 104618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,339 DEBUG Processing 483/893 atomic regions from SNP 144628 to 145228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,378 DEBUG Processing 489/853 atomic regions from SNP 146688 to 147288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,428 DEBUG Processing 268/644 atomic regions from SNP 80317 to 80917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,457 DEBUG Processing 366/1128 atomic regions from SNP 109769 to 110369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,498 DEBUG Processing 440/471 atomic regions from SNP 131784 to 132384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,573 DEBUG Processing 348/1017 atomic regions from SNP 104318 to 104918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,608 DEBUG Processing 490/853 atomic regions from SNP 146988 to 147588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,609 DEBUG Processing 484/893 atomic regions from SNP 144928 to 145528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,658 DEBUG Processing 269/644 atomic regions from SNP 80617 to 81217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,723 DEBUG Processing 367/1128 atomic regions from SNP 110069 to 110669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,732 DEBUG Processing 441/471 atomic regions from SNP 132084 to 132684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,826 DEBUG Processing 349/1017 atomic regions from SNP 104618 to 105218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,835 DEBUG Processing 491/853 atomic regions from SNP 147288 to 147888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,876 DEBUG Processing 485/893 atomic regions from SNP 145228 to 145828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,884 DEBUG Processing 270/644 atomic regions from SNP 80917 to 81517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,968 DEBUG Processing 442/471 atomic regions from SNP 132384 to 132984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:18,988 DEBUG Processing 368/1128 atomic regions from SNP 110369 to 110969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,063 DEBUG Processing 492/853 atomic regions from SNP 147588 to 148188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,082 DEBUG Processing 350/1017 atomic regions from SNP 104918 to 105518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,108 DEBUG Processing 271/644 atomic regions from SNP 81217 to 81817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,142 DEBUG Processing 486/893 atomic regions from SNP 145528 to 146128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,200 DEBUG Processing 443/471 atomic regions from SNP 132684 to 133284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,261 DEBUG Processing 369/1128 atomic regions from SNP 110669 to 111269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,296 DEBUG Processing 493/853 atomic regions from SNP 147888 to 148488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,343 DEBUG Processing 272/644 atomic regions from SNP 81517 to 82117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,344 DEBUG Processing 351/1017 atomic regions from SNP 105218 to 105818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,401 DEBUG Processing 487/893 atomic regions from SNP 145828 to 146428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,424 DEBUG Processing 444/471 atomic regions from SNP 132984 to 133584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,535 DEBUG Processing 494/853 atomic regions from SNP 148188 to 148788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,557 DEBUG Processing 370/1128 atomic regions from SNP 110969 to 111569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,580 DEBUG Processing 273/644 atomic regions from SNP 81817 to 82417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,609 DEBUG Processing 352/1017 atomic regions from SNP 105518 to 106118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,644 DEBUG Processing 445/471 atomic regions from SNP 133284 to 133884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,660 DEBUG Processing 488/893 atomic regions from SNP 146128 to 146728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,770 DEBUG Processing 495/853 atomic regions from SNP 148488 to 149088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,821 DEBUG Processing 274/644 atomic regions from SNP 82117 to 82717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,849 DEBUG Processing 371/1128 atomic regions from SNP 111269 to 111869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,872 DEBUG Processing 446/471 atomic regions from SNP 133584 to 134184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:19,877 DEBUG Processing 353/1017 atomic regions from SNP 105818 to 106418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,922 DEBUG Processing 489/893 atomic regions from SNP 146428 to 147028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,001 DEBUG Processing 496/853 atomic regions from SNP 148788 to 149388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,066 DEBUG Processing 275/644 atomic regions from SNP 82417 to 83017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,112 DEBUG Processing 447/471 atomic regions from SNP 133884 to 134484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,132 DEBUG Processing 372/1128 atomic regions from SNP 111569 to 112169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,148 DEBUG Processing 354/1017 atomic regions from SNP 106118 to 106718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,190 DEBUG Processing 490/893 atomic regions from SNP 146728 to 147328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,230 DEBUG Processing 497/853 atomic regions from SNP 149088 to 149688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,305 DEBUG Processing 276/644 atomic regions from SNP 82717 to 83317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,350 DEBUG Processing 448/471 atomic regions from SNP 134184 to 134784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,408 DEBUG Processing 373/1128 atomic regions from SNP 111869 to 112469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,414 DEBUG Processing 355/1017 atomic regions from SNP 106418 to 107018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,459 DEBUG Processing 498/853 atomic regions from SNP 149388 to 149988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,461 DEBUG Processing 491/893 atomic regions from SNP 147028 to 147628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,534 DEBUG Processing 277/644 atomic regions from SNP 83017 to 83617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,585 DEBUG Processing 449/471 atomic regions from SNP 134484 to 135084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,673 DEBUG Processing 356/1017 atomic regions from SNP 106718 to 107318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,686 DEBUG Processing 374/1128 atomic regions from SNP 112169 to 112769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,694 DEBUG Processing 499/853 atomic regions from SNP 149688 to 150288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,730 DEBUG Processing 492/893 atomic regions from SNP 147328 to 147928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,759 DEBUG Processing 278/644 atomic regions from SNP 83317 to 83917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,810 DEBUG Processing 450/471 atomic regions from SNP 134784 to 135384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:20,924 DEBUG Processing 357/1017 atomic regions from SNP 107018 to 107618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,932 DEBUG Processing 500/853 atomic regions from SNP 149988 to 150588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,957 DEBUG Processing 375/1128 atomic regions from SNP 112469 to 113069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,992 DEBUG Processing 279/644 atomic regions from SNP 83617 to 84217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,005 DEBUG Processing 493/893 atomic regions from SNP 147628 to 148228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,036 DEBUG Processing 451/471 atomic regions from SNP 135084 to 135684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,170 DEBUG Processing 501/853 atomic regions from SNP 150288 to 150888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,176 DEBUG Processing 358/1017 atomic regions from SNP 107318 to 107918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,221 DEBUG Processing 280/644 atomic regions from SNP 83917 to 84517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,231 DEBUG Processing 376/1128 atomic regions from SNP 112769 to 113369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,270 DEBUG Processing 452/471 atomic regions from SNP 135384 to 135984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,283 DEBUG Processing 494/893 atomic regions from SNP 147928 to 148528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,400 DEBUG Processing 502/853 atomic regions from SNP 150588 to 151188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,427 DEBUG Processing 359/1017 atomic regions from SNP 107618 to 108218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,448 DEBUG Processing 281/644 atomic regions from SNP 84217 to 84817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,499 DEBUG Processing 377/1128 atomic regions from SNP 113069 to 113669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,503 DEBUG Processing 453/471 atomic regions from SNP 135684 to 136284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,533 DEBUG Processing 495/893 atomic regions from SNP 148228 to 148828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,629 DEBUG Processing 503/853 atomic regions from SNP 150888 to 151488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,681 DEBUG Processing 282/644 atomic regions from SNP 84517 to 85117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,682 DEBUG Processing 360/1017 atomic regions from SNP 107918 to 108518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,742 DEBUG Processing 454/471 atomic regions from SNP 135984 to 136584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:21,777 DEBUG Processing 378/1128 atomic regions from SNP 113369 to 113969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,779 DEBUG Processing 496/893 atomic regions from SNP 148528 to 149128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,872 DEBUG Processing 504/853 atomic regions from SNP 151188 to 151788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,913 DEBUG Processing 283/644 atomic regions from SNP 84817 to 85417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,945 DEBUG Processing 361/1017 atomic regions from SNP 108218 to 108818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,982 DEBUG Processing 455/471 atomic regions from SNP 136284 to 136884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,024 DEBUG Processing 497/893 atomic regions from SNP 148828 to 149428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,057 DEBUG Processing 379/1128 atomic regions from SNP 113669 to 114269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,128 DEBUG Processing 505/853 atomic regions from SNP 151488 to 152088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,142 DEBUG Processing 284/644 atomic regions from SNP 85117 to 85717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,207 DEBUG Processing 362/1017 atomic regions from SNP 108518 to 109118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,216 DEBUG Processing 456/471 atomic regions from SNP 136584 to 137184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,271 DEBUG Processing 498/893 atomic regions from SNP 149128 to 149728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,337 DEBUG Processing 380/1128 atomic regions from SNP 113969 to 114569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,367 DEBUG Processing 285/644 atomic regions from SNP 85417 to 86017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,368 DEBUG Processing 506/853 atomic regions from SNP 151788 to 152388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,447 DEBUG Processing 457/471 atomic regions from SNP 136884 to 137484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,471 DEBUG Processing 363/1017 atomic regions from SNP 108818 to 109418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,513 DEBUG Processing 499/893 atomic regions from SNP 149428 to 150028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,592 DEBUG Processing 286/644 atomic regions from SNP 85717 to 86317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,609 DEBUG Processing 381/1128 atomic regions from SNP 114269 to 114869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,614 DEBUG Processing 507/853 atomic regions from SNP 152088 to 152688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,676 DEBUG Processing 458/471 atomic regions from SNP 137184 to 137784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,736 DEBUG Processing 364/1017 atomic regions from SNP 109118 to 109718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,749 DEBUG Processing 500/893 atomic regions from SNP 149728 to 150328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,813 DEBUG Processing 287/644 atomic regions from SNP 86017 to 86617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,847 DEBUG Processing 508/853 atomic regions from SNP 152388 to 152988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,879 DEBUG Processing 382/1128 atomic regions from SNP 114569 to 115169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,904 DEBUG Processing 459/471 atomic regions from SNP 137484 to 138084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:22,980 DEBUG Processing 501/893 atomic regions from SNP 150028 to 150628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,992 DEBUG Processing 365/1017 atomic regions from SNP 109418 to 110018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,036 DEBUG Processing 288/644 atomic regions from SNP 86317 to 86917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,081 DEBUG Processing 509/853 atomic regions from SNP 152688 to 153288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,140 DEBUG Processing 460/471 atomic regions from SNP 137784 to 138384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,155 DEBUG Processing 383/1128 atomic regions from SNP 114869 to 115469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,209 DEBUG Processing 502/893 atomic regions from SNP 150328 to 150928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,245 DEBUG Processing 366/1017 atomic regions from SNP 109718 to 110318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,257 DEBUG Processing 289/644 atomic regions from SNP 86617 to 87217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,316 DEBUG Processing 510/853 atomic regions from SNP 152988 to 153588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,376 DEBUG Processing 461/471 atomic regions from SNP 138084 to 138684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,432 DEBUG Processing 384/1128 atomic regions from SNP 115169 to 115769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,449 DEBUG Processing 503/893 atomic regions from SNP 150628 to 151228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,481 DEBUG Processing 290/644 atomic regions from SNP 86917 to 87517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,496 DEBUG Processing 367/1017 atomic regions from SNP 110018 to 110618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,557 DEBUG Processing 511/853 atomic regions from SNP 153288 to 153888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,612 DEBUG Processing 462/471 atomic regions from SNP 138384 to 138984 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,688 DEBUG Processing 504/893 atomic regions from SNP 150928 to 151528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,704 DEBUG Processing 291/644 atomic regions from SNP 87217 to 87817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,705 DEBUG Processing 385/1128 atomic regions from SNP 115469 to 116069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,745 DEBUG Processing 368/1017 atomic regions from SNP 110318 to 110918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,786 DEBUG Processing 512/853 atomic regions from SNP 153588 to 154188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,844 DEBUG Processing 463/471 atomic regions from SNP 138684 to 139284 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:23,929 DEBUG Processing 505/893 atomic regions from SNP 151228 to 151828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,929 DEBUG Processing 292/644 atomic regions from SNP 87517 to 88117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,973 DEBUG Processing 386/1128 atomic regions from SNP 115769 to 116369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,993 DEBUG Processing 369/1017 atomic regions from SNP 110618 to 111218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,014 DEBUG Processing 513/853 atomic regions from SNP 153888 to 154488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,077 DEBUG Processing 464/471 atomic regions from SNP 138984 to 139584 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,154 DEBUG Processing 293/644 atomic regions from SNP 87817 to 88417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,171 DEBUG Processing 506/893 atomic regions from SNP 151528 to 152128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,245 DEBUG Processing 370/1017 atomic regions from SNP 110918 to 111518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,245 DEBUG Processing 387/1128 atomic regions from SNP 116069 to 116669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,250 DEBUG Processing 514/853 atomic regions from SNP 154188 to 154788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,310 DEBUG Processing 465/471 atomic regions from SNP 139284 to 139884 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,380 DEBUG Processing 294/644 atomic regions from SNP 88117 to 88717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,404 DEBUG Processing 507/893 atomic regions from SNP 151828 to 152428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,488 DEBUG Processing 515/853 atomic regions from SNP 154488 to 155088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,499 DEBUG Processing 371/1017 atomic regions from SNP 111218 to 111818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,521 DEBUG Processing 388/1128 atomic regions from SNP 116369 to 116969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,545 DEBUG Processing 466/471 atomic regions from SNP 139584 to 140184 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,603 DEBUG Processing 295/644 atomic regions from SNP 88417 to 89017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,634 DEBUG Processing 508/893 atomic regions from SNP 152128 to 152728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,734 DEBUG Processing 516/853 atomic regions from SNP 154788 to 155388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,761 DEBUG Processing 372/1017 atomic regions from SNP 111518 to 112118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,782 DEBUG Processing 467/471 atomic regions from SNP 139884 to 140484 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:24,803 DEBUG Processing 389/1128 atomic regions from SNP 116669 to 117269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,828 DEBUG Processing 296/644 atomic regions from SNP 88717 to 89317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,863 DEBUG Processing 509/893 atomic regions from SNP 152428 to 153028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,988 DEBUG Processing 517/853 atomic regions from SNP 155088 to 155688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,022 DEBUG Processing 373/1017 atomic regions from SNP 111818 to 112418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,022 DEBUG Processing 468/471 atomic regions from SNP 140184 to 140784 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,055 DEBUG Processing 297/644 atomic regions from SNP 89017 to 89617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,087 DEBUG Processing 390/1128 atomic regions from SNP 116969 to 117569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,102 DEBUG Processing 510/893 atomic regions from SNP 152728 to 153328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,225 DEBUG Processing 518/853 atomic regions from SNP 155388 to 155988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,266 DEBUG Processing 469/471 atomic regions from SNP 140484 to 141084 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,285 DEBUG Processing 374/1017 atomic regions from SNP 112118 to 112718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,289 DEBUG Processing 298/644 atomic regions from SNP 89317 to 89917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,348 DEBUG Processing 511/893 atomic regions from SNP 153028 to 153628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,366 DEBUG Processing 391/1128 atomic regions from SNP 117269 to 117869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,463 DEBUG Processing 519/853 atomic regions from SNP 155688 to 156288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,504 DEBUG Processing 470/471 atomic regions from SNP 140784 to 141384 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,521 DEBUG Processing 299/644 atomic regions from SNP 89617 to 90217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,544 DEBUG Processing 375/1017 atomic regions from SNP 112418 to 113018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,593 DEBUG Processing 512/893 atomic regions from SNP 153328 to 153928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,656 DEBUG Processing 392/1128 atomic regions from SNP 117569 to 118169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,719 DEBUG Processing 520/853 atomic regions from SNP 155988 to 156588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,741 DEBUG Processing 471/471 atomic regions from SNP 141084 to 141684 for chrX (subchromosome 4 of 6). 2025-01-31 09:46:25,753 DEBUG Processing 300/644 atomic regions from SNP 89917 to 90517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,802 DEBUG Processing 376/1017 atomic regions from SNP 112718 to 113318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,859 DEBUG Processing 513/893 atomic regions from SNP 153628 to 154228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,877 DEBUG Unique SNPs positions in subchromosome 4: 141685 2025-01-31 09:46:25,931 DEBUG Processing 393/1128 atomic regions from SNP 117869 to 118469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,984 DEBUG Processing 521/853 atomic regions from SNP 156288 to 156888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,989 DEBUG Processing 301/644 atomic regions from SNP 90217 to 90817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,060 DEBUG Processing 377/1017 atomic regions from SNP 113018 to 113618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,129 DEBUG Processing 514/893 atomic regions from SNP 153928 to 154528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,211 DEBUG Processing 394/1128 atomic regions from SNP 118169 to 118769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,223 DEBUG Processing 302/644 atomic regions from SNP 90517 to 91117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,228 DEBUG Processing 522/853 atomic regions from SNP 156588 to 157188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,315 DEBUG Processing 378/1017 atomic regions from SNP 113318 to 113918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,402 DEBUG Processing 515/893 atomic regions from SNP 154228 to 154828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,454 DEBUG Processing 303/644 atomic regions from SNP 90817 to 91417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,471 DEBUG Processing 523/853 atomic regions from SNP 156888 to 157488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,492 DEBUG Processing 395/1128 atomic regions from SNP 118469 to 119069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,564 DEBUG Processing 379/1017 atomic regions from SNP 113618 to 114218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,679 DEBUG Processing 516/893 atomic regions from SNP 154528 to 155128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,685 DEBUG Processing 304/644 atomic regions from SNP 91117 to 91717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,710 DEBUG Processing 524/853 atomic regions from SNP 157188 to 157788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,773 DEBUG Processing 396/1128 atomic regions from SNP 118769 to 119369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,818 DEBUG Processing 380/1017 atomic regions from SNP 113918 to 114518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,907 DEBUG Processing 305/644 atomic regions from SNP 91417 to 92017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,954 DEBUG Processing 525/853 atomic regions from SNP 157488 to 158088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,956 DEBUG Processing 517/893 atomic regions from SNP 154828 to 155428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,051 DEBUG Processing 397/1128 atomic regions from SNP 119069 to 119669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,075 DEBUG Processing 381/1017 atomic regions from SNP 114218 to 114818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,146 DEBUG Processing 306/644 atomic regions from SNP 91717 to 92317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,193 DEBUG Processing 526/853 atomic regions from SNP 157788 to 158388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,233 DEBUG Processing 518/893 atomic regions from SNP 155128 to 155728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,318 DEBUG Processing 398/1128 atomic regions from SNP 119369 to 119969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,324 DEBUG Processing 382/1017 atomic regions from SNP 114518 to 115118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,387 DEBUG Processing 307/644 atomic regions from SNP 92017 to 92617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,432 DEBUG Processing 527/853 atomic regions from SNP 158088 to 158688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,451 DEBUG Subchromosome time: 130.10115764499642, subchromosome SNPs: 141685 2025-01-31 09:46:27,469 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:27,503 DEBUG Processing 519/893 atomic regions from SNP 155428 to 156028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,576 DEBUG Processing 383/1017 atomic regions from SNP 114818 to 115418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,586 DEBUG Processing 399/1128 atomic regions from SNP 119669 to 120269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,620 DEBUG Processing 308/644 atomic regions from SNP 92317 to 92917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,678 DEBUG Processing 528/853 atomic regions from SNP 158388 to 158988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,775 DEBUG Processing 520/893 atomic regions from SNP 155728 to 156328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,830 DEBUG Processing 384/1017 atomic regions from SNP 115118 to 115718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,850 DEBUG Processing 309/644 atomic regions from SNP 92617 to 93217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,854 DEBUG Processing 400/1128 atomic regions from SNP 119969 to 120569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,914 DEBUG Processing 529/853 atomic regions from SNP 158688 to 159288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,044 DEBUG Processing 521/893 atomic regions from SNP 156028 to 156628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,080 DEBUG Processing 310/644 atomic regions from SNP 92917 to 93517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,088 DEBUG Processing 385/1017 atomic regions from SNP 115418 to 116018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,128 DEBUG Processing 401/1128 atomic regions from SNP 120269 to 120869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,154 DEBUG Processing 530/853 atomic regions from SNP 158988 to 159588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,314 DEBUG Processing 522/893 atomic regions from SNP 156328 to 156928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,316 DEBUG Processing 311/644 atomic regions from SNP 93217 to 93817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,351 DEBUG Processing 386/1017 atomic regions from SNP 115718 to 116318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,390 DEBUG Processing 531/853 atomic regions from SNP 159288 to 159888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,423 DEBUG Processing 402/1128 atomic regions from SNP 120569 to 121169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,567 DEBUG Processing 312/644 atomic regions from SNP 93517 to 94117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,600 DEBUG Processing 523/893 atomic regions from SNP 156628 to 157228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,623 DEBUG Processing 387/1017 atomic regions from SNP 116018 to 116618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,636 DEBUG Processing 532/853 atomic regions from SNP 159588 to 160188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,734 DEBUG Processing 403/1128 atomic regions from SNP 120869 to 121469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,798 DEBUG Processing 313/644 atomic regions from SNP 93817 to 94417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,870 DEBUG Processing 524/893 atomic regions from SNP 156928 to 157528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,872 DEBUG Processing 533/853 atomic regions from SNP 159888 to 160488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,888 DEBUG Processing 388/1017 atomic regions from SNP 116318 to 116918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,001 DEBUG Processing 404/1128 atomic regions from SNP 121169 to 121769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,024 DEBUG Processing 314/644 atomic regions from SNP 94117 to 94717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,149 DEBUG Processing 534/853 atomic regions from SNP 160188 to 160788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,182 DEBUG Processing 525/893 atomic regions from SNP 157228 to 157828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,185 DEBUG Processing 389/1017 atomic regions from SNP 116618 to 117218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,300 DEBUG Processing 315/644 atomic regions from SNP 94417 to 95017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,321 DEBUG Processing 405/1128 atomic regions from SNP 121469 to 122069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,415 DEBUG Processing 535/853 atomic regions from SNP 160488 to 161088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,455 DEBUG Processing 390/1017 atomic regions from SNP 116918 to 117518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,468 DEBUG Processing 526/893 atomic regions from SNP 157528 to 158128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,526 DEBUG Processing 316/644 atomic regions from SNP 94717 to 95317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,591 DEBUG Processing 406/1128 atomic regions from SNP 121769 to 122369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,661 DEBUG Processing 536/853 atomic regions from SNP 160788 to 161388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,710 DEBUG Processing 391/1017 atomic regions from SNP 117218 to 117818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,752 DEBUG Processing 527/893 atomic regions from SNP 157828 to 158428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,755 DEBUG Processing 317/644 atomic regions from SNP 95017 to 95617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,857 DEBUG Processing 407/1128 atomic regions from SNP 122069 to 122669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,899 DEBUG Processing 537/853 atomic regions from SNP 161088 to 161688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,965 DEBUG Processing 392/1017 atomic regions from SNP 117518 to 118118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,985 DEBUG Processing 318/644 atomic regions from SNP 95317 to 95917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,016 DEBUG Processing 528/893 atomic regions from SNP 158128 to 158728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,123 DEBUG Processing 408/1128 atomic regions from SNP 122369 to 122969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,132 DEBUG Processing 538/853 atomic regions from SNP 161388 to 161988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,222 DEBUG Processing 319/644 atomic regions from SNP 95617 to 96217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,238 DEBUG Processing 393/1017 atomic regions from SNP 117818 to 118418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,273 DEBUG Processing 529/893 atomic regions from SNP 158428 to 159028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,397 DEBUG Processing 409/1128 atomic regions from SNP 122669 to 123269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,399 DEBUG Processing 539/853 atomic regions from SNP 161688 to 162288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,469 DEBUG Processing 320/644 atomic regions from SNP 95917 to 96517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,537 DEBUG Processing 394/1017 atomic regions from SNP 118118 to 118718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,539 DEBUG Processing 530/893 atomic regions from SNP 158728 to 159328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,650 DEBUG Processing 540/853 atomic regions from SNP 161988 to 162588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,681 DEBUG Processing 410/1128 atomic regions from SNP 122969 to 123569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,711 DEBUG Processing 321/644 atomic regions from SNP 96217 to 96817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,775 DEBUG Processing 531/893 atomic regions from SNP 159028 to 159628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,806 DEBUG Processing 395/1017 atomic regions from SNP 118418 to 119018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,913 DEBUG Processing 541/853 atomic regions from SNP 162288 to 162888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,948 DEBUG Processing 322/644 atomic regions from SNP 96517 to 97117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,951 DEBUG Processing 411/1128 atomic regions from SNP 123269 to 123869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,027 DEBUG Processing 532/893 atomic regions from SNP 159328 to 159928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,098 DEBUG Processing 396/1017 atomic regions from SNP 118718 to 119318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,182 DEBUG Processing 323/644 atomic regions from SNP 96817 to 97417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,187 DEBUG Processing 542/853 atomic regions from SNP 162588 to 163188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,222 DEBUG Processing 412/1128 atomic regions from SNP 123569 to 124169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,291 DEBUG Processing 533/893 atomic regions from SNP 159628 to 160228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,374 DEBUG Processing 397/1017 atomic regions from SNP 119018 to 119618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,425 DEBUG Processing 324/644 atomic regions from SNP 97117 to 97717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,445 DEBUG Processing 543/853 atomic regions from SNP 162888 to 163488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,500 DEBUG Processing 413/1128 atomic regions from SNP 123869 to 124469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,546 DEBUG Processing 534/893 atomic regions from SNP 159928 to 160528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,644 DEBUG Processing 398/1017 atomic regions from SNP 119318 to 119918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,658 DEBUG Processing 325/644 atomic regions from SNP 97417 to 98017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,684 DEBUG Processing 544/853 atomic regions from SNP 163188 to 163788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,790 DEBUG Processing 414/1128 atomic regions from SNP 124169 to 124769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,803 DEBUG Processing 535/893 atomic regions from SNP 160228 to 160828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,894 DEBUG Processing 326/644 atomic regions from SNP 97717 to 98317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,911 DEBUG Processing 399/1017 atomic regions from SNP 119618 to 120218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,914 DEBUG Processing 545/853 atomic regions from SNP 163488 to 164088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,051 DEBUG Processing 536/893 atomic regions from SNP 160528 to 161128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,094 DEBUG Processing 415/1128 atomic regions from SNP 124469 to 125069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,150 DEBUG Processing 327/644 atomic regions from SNP 98017 to 98617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,155 DEBUG Processing 546/853 atomic regions from SNP 163788 to 164388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,189 DEBUG Processing 400/1017 atomic regions from SNP 119918 to 120518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,294 DEBUG Processing 537/893 atomic regions from SNP 160828 to 161428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,401 DEBUG Processing 547/853 atomic regions from SNP 164088 to 164688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,407 DEBUG Processing 416/1128 atomic regions from SNP 124769 to 125369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,418 DEBUG Processing 328/644 atomic regions from SNP 98317 to 98917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,471 DEBUG Processing 401/1017 atomic regions from SNP 120218 to 120818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,525 DEBUG Processing 538/893 atomic regions from SNP 161128 to 161728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,648 DEBUG Processing 548/853 atomic regions from SNP 164388 to 164988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,669 DEBUG Processing 329/644 atomic regions from SNP 98617 to 99217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,716 DEBUG Processing 417/1128 atomic regions from SNP 125069 to 125669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,745 DEBUG Processing 402/1017 atomic regions from SNP 120518 to 121118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,753 DEBUG Processing 539/893 atomic regions from SNP 161428 to 162028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,894 DEBUG Processing 549/853 atomic regions from SNP 164688 to 165288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,903 DEBUG Processing 330/644 atomic regions from SNP 98917 to 99517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,986 DEBUG Processing 540/893 atomic regions from SNP 161728 to 162328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,019 DEBUG Processing 403/1017 atomic regions from SNP 120818 to 121418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,021 DEBUG Processing 418/1128 atomic regions from SNP 125369 to 125969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,135 DEBUG Processing 550/853 atomic regions from SNP 164988 to 165588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,137 DEBUG Processing 331/644 atomic regions from SNP 99217 to 99817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,223 DEBUG Processing 541/893 atomic regions from SNP 162028 to 162628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,311 DEBUG Processing 404/1017 atomic regions from SNP 121118 to 121718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,317 DEBUG Processing 419/1128 atomic regions from SNP 125669 to 126269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,372 DEBUG Processing 332/644 atomic regions from SNP 99517 to 100117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,375 DEBUG Processing 551/853 atomic regions from SNP 165288 to 165888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,466 DEBUG Processing 542/893 atomic regions from SNP 162328 to 162928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,570 DEBUG Processing 405/1017 atomic regions from SNP 121418 to 122018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,601 DEBUG Processing 333/644 atomic regions from SNP 99817 to 100417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,606 DEBUG Processing 420/1128 atomic regions from SNP 125969 to 126569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,608 DEBUG Processing 552/853 atomic regions from SNP 165588 to 166188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,708 DEBUG Processing 543/893 atomic regions from SNP 162628 to 163228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,832 DEBUG Processing 334/644 atomic regions from SNP 100117 to 100717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,837 DEBUG Processing 406/1017 atomic regions from SNP 121718 to 122318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,838 DEBUG Processing 553/853 atomic regions from SNP 165888 to 166488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,907 DEBUG Processing 421/1128 atomic regions from SNP 126269 to 126869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,950 DEBUG Processing 544/893 atomic regions from SNP 162928 to 163528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,062 DEBUG Processing 335/644 atomic regions from SNP 100417 to 101017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,068 DEBUG Processing 554/853 atomic regions from SNP 166188 to 166788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,107 DEBUG Processing 407/1017 atomic regions from SNP 122018 to 122618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,187 DEBUG Processing 545/893 atomic regions from SNP 163228 to 163828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,211 DEBUG Processing 422/1128 atomic regions from SNP 126569 to 127169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,292 DEBUG Processing 336/644 atomic regions from SNP 100717 to 101317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,299 DEBUG Processing 555/853 atomic regions from SNP 166488 to 167088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,360 DEBUG Processing 408/1017 atomic regions from SNP 122318 to 122918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,423 DEBUG Processing 546/893 atomic regions from SNP 163528 to 164128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,506 DEBUG Processing 423/1128 atomic regions from SNP 126869 to 127469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,527 DEBUG Processing 337/644 atomic regions from SNP 101017 to 101617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,535 DEBUG Processing 556/853 atomic regions from SNP 166788 to 167388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,624 DEBUG Processing 409/1017 atomic regions from SNP 122618 to 123218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,659 DEBUG Processing 547/893 atomic regions from SNP 163828 to 164428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,772 DEBUG Processing 557/853 atomic regions from SNP 167088 to 167688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,779 DEBUG Processing 424/1128 atomic regions from SNP 127169 to 127769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,787 DEBUG Processing 338/644 atomic regions from SNP 101317 to 101917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,885 DEBUG Processing 410/1017 atomic regions from SNP 122918 to 123518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,926 DEBUG Processing 548/893 atomic regions from SNP 164128 to 164728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,014 DEBUG Processing 558/853 atomic regions from SNP 167388 to 167988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,036 DEBUG Processing 339/644 atomic regions from SNP 101617 to 102217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,055 DEBUG Processing 425/1128 atomic regions from SNP 127469 to 128069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,145 DEBUG Processing 411/1017 atomic regions from SNP 123218 to 123818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,191 DEBUG Processing 549/893 atomic regions from SNP 164428 to 165028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,261 DEBUG Processing 559/853 atomic regions from SNP 167688 to 168288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,271 DEBUG Processing 340/644 atomic regions from SNP 101917 to 102517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,329 DEBUG Processing 426/1128 atomic regions from SNP 127769 to 128369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,398 DEBUG Processing 412/1017 atomic regions from SNP 123518 to 124118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,446 DEBUG Processing 550/893 atomic regions from SNP 164728 to 165328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,500 DEBUG Processing 341/644 atomic regions from SNP 102217 to 102817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,527 DEBUG Processing 560/853 atomic regions from SNP 167988 to 168588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,601 DEBUG Processing 427/1128 atomic regions from SNP 128069 to 128669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,664 DEBUG Processing 413/1017 atomic regions from SNP 123818 to 124418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,713 DEBUG Processing 551/893 atomic regions from SNP 165028 to 165628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,736 DEBUG Processing 342/644 atomic regions from SNP 102517 to 103117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,807 DEBUG Processing 561/853 atomic regions from SNP 168288 to 168888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,874 DEBUG Processing 428/1128 atomic regions from SNP 128369 to 128969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,941 DEBUG Processing 414/1017 atomic regions from SNP 124118 to 124718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,975 DEBUG Processing 343/644 atomic regions from SNP 102817 to 103417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,976 DEBUG Processing 552/893 atomic regions from SNP 165328 to 165928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,079 DEBUG Processing 562/853 atomic regions from SNP 168588 to 169188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,112 DEBUG Segmenting atomic regions: 2025-01-31 09:46:36,149 DEBUG Processing 429/1128 atomic regions from SNP 128669 to 129269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,202 DEBUG Processing 415/1017 atomic regions from SNP 124418 to 125018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,209 DEBUG Processing 344/644 atomic regions from SNP 103117 to 103717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,222 DEBUG Processing 1/232 atomic regions from SNP 0 to 601 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,224 DEBUG Processing 553/893 atomic regions from SNP 165628 to 166228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,346 DEBUG Processing 563/853 atomic regions from SNP 168888 to 169488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,427 DEBUG Processing 430/1128 atomic regions from SNP 128969 to 129569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,445 DEBUG Processing 345/644 atomic regions from SNP 103417 to 104017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,455 DEBUG Processing 2/232 atomic regions from SNP 301 to 902 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,475 DEBUG Processing 416/1017 atomic regions from SNP 124718 to 125318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,498 DEBUG Processing 554/893 atomic regions from SNP 165928 to 166528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,594 DEBUG Processing 564/853 atomic regions from SNP 169188 to 169788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,680 DEBUG Processing 346/644 atomic regions from SNP 103717 to 104317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,687 DEBUG Processing 3/232 atomic regions from SNP 602 to 1203 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,706 DEBUG Processing 431/1128 atomic regions from SNP 129269 to 129869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,764 DEBUG Processing 417/1017 atomic regions from SNP 125018 to 125618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,771 DEBUG Processing 555/893 atomic regions from SNP 166228 to 166828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,830 DEBUG Processing 565/853 atomic regions from SNP 169488 to 170088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,911 DEBUG Processing 347/644 atomic regions from SNP 104017 to 104617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,923 DEBUG Processing 4/232 atomic regions from SNP 903 to 1504 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:36,982 DEBUG Processing 432/1128 atomic regions from SNP 129569 to 130169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,031 DEBUG Processing 418/1017 atomic regions from SNP 125318 to 125918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,035 DEBUG Processing 556/893 atomic regions from SNP 166528 to 167128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,069 DEBUG Processing 566/853 atomic regions from SNP 169788 to 170388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,142 DEBUG Processing 348/644 atomic regions from SNP 104317 to 104917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,154 DEBUG Processing 5/232 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,263 DEBUG Processing 433/1128 atomic regions from SNP 129869 to 130469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,301 DEBUG Processing 557/893 atomic regions from SNP 166828 to 167428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,304 DEBUG Processing 419/1017 atomic regions from SNP 125618 to 126218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,320 DEBUG Processing 567/853 atomic regions from SNP 170088 to 170688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,382 DEBUG Processing 349/644 atomic regions from SNP 104617 to 105217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,388 DEBUG Processing 6/232 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,548 DEBUG Processing 434/1128 atomic regions from SNP 130169 to 130769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,575 DEBUG Processing 568/853 atomic regions from SNP 170388 to 170988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,576 DEBUG Processing 558/893 atomic regions from SNP 167128 to 167728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,578 DEBUG Processing 420/1017 atomic regions from SNP 125918 to 126518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,627 DEBUG Processing 7/232 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:37,627 DEBUG Processing 350/644 atomic regions from SNP 104917 to 105517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,833 DEBUG Processing 569/853 atomic regions from SNP 170688 to 171288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,841 DEBUG Processing 435/1128 atomic regions from SNP 130469 to 131069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,847 DEBUG Processing 421/1017 atomic regions from SNP 126218 to 126818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,871 DEBUG Processing 559/893 atomic regions from SNP 167428 to 168028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,872 DEBUG Processing 351/644 atomic regions from SNP 105217 to 105817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,875 DEBUG Processing 8/232 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,086 DEBUG Processing 570/853 atomic regions from SNP 170988 to 171588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,117 DEBUG Processing 422/1017 atomic regions from SNP 126518 to 127118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,118 DEBUG Processing 352/644 atomic regions from SNP 105517 to 106117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,126 DEBUG Processing 9/232 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,134 DEBUG Processing 436/1128 atomic regions from SNP 130769 to 131369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,152 DEBUG Processing 560/893 atomic regions from SNP 167728 to 168328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,349 DEBUG Processing 571/853 atomic regions from SNP 171288 to 171888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,352 DEBUG Processing 353/644 atomic regions from SNP 105817 to 106417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,367 DEBUG Processing 10/232 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,378 DEBUG Processing 423/1017 atomic regions from SNP 126818 to 127418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,407 DEBUG Processing 561/893 atomic regions from SNP 168028 to 168628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,422 DEBUG Processing 437/1128 atomic regions from SNP 131069 to 131669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,588 DEBUG Processing 354/644 atomic regions from SNP 106117 to 106717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,602 DEBUG Processing 11/232 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,609 DEBUG Processing 572/853 atomic regions from SNP 171588 to 172188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,649 DEBUG Processing 424/1017 atomic regions from SNP 127118 to 127718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,675 DEBUG Processing 562/893 atomic regions from SNP 168328 to 168928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,711 DEBUG Processing 438/1128 atomic regions from SNP 131369 to 131969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,820 DEBUG Processing 355/644 atomic regions from SNP 106417 to 107017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,830 DEBUG Processing 12/232 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:38,856 DEBUG Processing 573/853 atomic regions from SNP 171888 to 172488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,907 DEBUG Processing 425/1017 atomic regions from SNP 127418 to 128018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,935 DEBUG Processing 563/893 atomic regions from SNP 168628 to 169228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,997 DEBUG Processing 439/1128 atomic regions from SNP 131669 to 132269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,056 DEBUG Processing 356/644 atomic regions from SNP 106717 to 107317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,065 DEBUG Processing 13/232 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,092 DEBUG Processing 574/853 atomic regions from SNP 172188 to 172788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,167 DEBUG Processing 426/1017 atomic regions from SNP 127718 to 128318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,214 DEBUG Processing 564/893 atomic regions from SNP 168928 to 169528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,298 DEBUG Processing 440/1128 atomic regions from SNP 131969 to 132569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,301 DEBUG Processing 357/644 atomic regions from SNP 107017 to 107617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,309 DEBUG Processing 14/232 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,341 DEBUG Processing 575/853 atomic regions from SNP 172488 to 173088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,431 DEBUG Processing 427/1017 atomic regions from SNP 128018 to 128618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,491 DEBUG Processing 565/893 atomic regions from SNP 169228 to 169828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,553 DEBUG Processing 358/644 atomic regions from SNP 107317 to 107917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,553 DEBUG Processing 15/232 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,588 DEBUG Processing 576/853 atomic regions from SNP 172788 to 173388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,599 DEBUG Processing 441/1128 atomic regions from SNP 132269 to 132869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,694 DEBUG Processing 428/1017 atomic regions from SNP 128318 to 128918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,772 DEBUG Processing 566/893 atomic regions from SNP 169528 to 170128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,796 DEBUG Processing 16/232 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:39,815 DEBUG Processing 359/644 atomic regions from SNP 107617 to 108217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,834 DEBUG Processing 577/853 atomic regions from SNP 173088 to 173688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,884 DEBUG Processing 442/1128 atomic regions from SNP 132569 to 133169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,953 DEBUG Processing 429/1017 atomic regions from SNP 128618 to 129218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,037 DEBUG Processing 567/893 atomic regions from SNP 169828 to 170428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,045 DEBUG Processing 17/232 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,069 DEBUG Processing 360/644 atomic regions from SNP 107917 to 108517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,088 DEBUG Processing 578/853 atomic regions from SNP 173388 to 173988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,173 DEBUG Processing 443/1128 atomic regions from SNP 132869 to 133469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,238 DEBUG Processing 430/1017 atomic regions from SNP 128918 to 129518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,302 DEBUG Processing 18/232 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,318 DEBUG Processing 568/893 atomic regions from SNP 170128 to 170728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,344 DEBUG Processing 361/644 atomic regions from SNP 108217 to 108817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,373 DEBUG Processing 579/853 atomic regions from SNP 173688 to 174288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,466 DEBUG Processing 444/1128 atomic regions from SNP 133169 to 133769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,566 DEBUG Processing 431/1017 atomic regions from SNP 129218 to 129818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,575 DEBUG Processing 19/232 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,633 DEBUG Processing 569/893 atomic regions from SNP 170428 to 171028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,663 DEBUG Processing 362/644 atomic regions from SNP 108517 to 109117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,668 DEBUG Processing 580/853 atomic regions from SNP 173988 to 174588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,766 DEBUG Processing 445/1128 atomic regions from SNP 133469 to 134069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,855 DEBUG Processing 20/232 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:40,882 DEBUG Processing 432/1017 atomic regions from SNP 129518 to 130118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,933 DEBUG Processing 570/893 atomic regions from SNP 170728 to 171328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,955 DEBUG Processing 581/853 atomic regions from SNP 174288 to 174888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,961 DEBUG Processing 363/644 atomic regions from SNP 108817 to 109417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,051 DEBUG Processing 446/1128 atomic regions from SNP 133769 to 134369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,091 DEBUG Processing 21/232 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,153 DEBUG Processing 433/1017 atomic regions from SNP 129818 to 130418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,188 DEBUG Processing 571/893 atomic regions from SNP 171028 to 171628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,210 DEBUG Processing 582/853 atomic regions from SNP 174588 to 175188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,220 DEBUG Processing 364/644 atomic regions from SNP 109117 to 109717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,323 DEBUG Processing 22/232 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,350 DEBUG Processing 447/1128 atomic regions from SNP 134069 to 134669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,415 DEBUG Processing 434/1017 atomic regions from SNP 130118 to 130718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,455 DEBUG Processing 583/853 atomic regions from SNP 174888 to 175488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,459 DEBUG Processing 572/893 atomic regions from SNP 171328 to 171928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,479 DEBUG Processing 365/644 atomic regions from SNP 109417 to 110017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,561 DEBUG Processing 23/232 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,632 DEBUG Processing 448/1128 atomic regions from SNP 134369 to 134969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,684 DEBUG Processing 435/1017 atomic regions from SNP 130418 to 131018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,707 DEBUG Processing 584/853 atomic regions from SNP 175188 to 175788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,728 DEBUG Processing 573/893 atomic regions from SNP 171628 to 172228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,742 DEBUG Processing 366/644 atomic regions from SNP 109717 to 110317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,788 DEBUG Processing 24/232 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:41,906 DEBUG Processing 449/1128 atomic regions from SNP 134669 to 135269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,960 DEBUG Processing 585/853 atomic regions from SNP 175488 to 176088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,964 DEBUG Processing 436/1017 atomic regions from SNP 130718 to 131318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,013 DEBUG Processing 574/893 atomic regions from SNP 171928 to 172528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,016 DEBUG Processing 367/644 atomic regions from SNP 110017 to 110617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,028 DEBUG Processing 25/232 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,189 DEBUG Processing 450/1128 atomic regions from SNP 134969 to 135569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,239 DEBUG Processing 586/853 atomic regions from SNP 175788 to 176388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,248 DEBUG Processing 437/1017 atomic regions from SNP 131018 to 131618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,268 DEBUG Processing 26/232 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,284 DEBUG Processing 368/644 atomic regions from SNP 110317 to 110917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,303 DEBUG Processing 575/893 atomic regions from SNP 172228 to 172828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,469 DEBUG Processing 451/1128 atomic regions from SNP 135269 to 135869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,506 DEBUG Processing 587/853 atomic regions from SNP 176088 to 176688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,510 DEBUG Processing 27/232 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,515 DEBUG Processing 438/1017 atomic regions from SNP 131318 to 131918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,530 DEBUG Processing 369/644 atomic regions from SNP 110617 to 111217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,582 DEBUG Processing 576/893 atomic regions from SNP 172528 to 173128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,750 DEBUG Processing 452/1128 atomic regions from SNP 135569 to 136169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,753 DEBUG Processing 28/232 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:42,766 DEBUG Processing 588/853 atomic regions from SNP 176388 to 176988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,770 DEBUG Processing 370/644 atomic regions from SNP 110917 to 111517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,779 DEBUG Processing 439/1017 atomic regions from SNP 131618 to 132218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,855 DEBUG Processing 577/893 atomic regions from SNP 172828 to 173428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,995 DEBUG Processing 29/232 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,006 DEBUG Processing 371/644 atomic regions from SNP 111217 to 111817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,033 DEBUG Processing 589/853 atomic regions from SNP 176688 to 177288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,037 DEBUG Processing 453/1128 atomic regions from SNP 135869 to 136469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,041 DEBUG Processing 440/1017 atomic regions from SNP 131918 to 132518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,104 DEBUG Processing 578/893 atomic regions from SNP 173128 to 173728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,226 DEBUG Processing 30/232 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,235 DEBUG Processing 372/644 atomic regions from SNP 111517 to 112117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,295 DEBUG Processing 590/853 atomic regions from SNP 176988 to 177588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,300 DEBUG Processing 441/1017 atomic regions from SNP 132218 to 132818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,320 DEBUG Processing 454/1128 atomic regions from SNP 136169 to 136769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,364 DEBUG Processing 579/893 atomic regions from SNP 173428 to 174028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,453 DEBUG Processing 31/232 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,478 DEBUG Processing 373/644 atomic regions from SNP 111817 to 112417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,569 DEBUG Processing 591/853 atomic regions from SNP 177288 to 177888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,584 DEBUG Processing 442/1017 atomic regions from SNP 132518 to 133118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,604 DEBUG Processing 455/1128 atomic regions from SNP 136469 to 137069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,637 DEBUG Processing 580/893 atomic regions from SNP 173728 to 174328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,676 DEBUG Processing 32/232 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,724 DEBUG Processing 374/644 atomic regions from SNP 112117 to 112717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,810 DEBUG Processing 592/853 atomic regions from SNP 177588 to 178188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,843 DEBUG Processing 443/1017 atomic regions from SNP 132818 to 133418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,889 DEBUG Processing 456/1128 atomic regions from SNP 136769 to 137369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,906 DEBUG Processing 33/232 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:43,917 DEBUG Processing 581/893 atomic regions from SNP 174028 to 174628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,977 DEBUG Processing 375/644 atomic regions from SNP 112417 to 113017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,051 DEBUG Processing 593/853 atomic regions from SNP 177888 to 178488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,096 DEBUG Processing 444/1017 atomic regions from SNP 133118 to 133718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,142 DEBUG Processing 34/232 atomic regions from SNP 9933 to 10533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,173 DEBUG Processing 457/1128 atomic regions from SNP 137069 to 137669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,198 DEBUG Processing 582/893 atomic regions from SNP 174328 to 174928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,232 DEBUG Processing 376/644 atomic regions from SNP 112717 to 113317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,285 DEBUG Processing 594/853 atomic regions from SNP 178188 to 178788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,350 DEBUG Processing 445/1017 atomic regions from SNP 133418 to 134018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,377 DEBUG Processing 35/232 atomic regions from SNP 10233 to 10833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,454 DEBUG Processing 458/1128 atomic regions from SNP 137369 to 137969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,460 DEBUG Processing 583/893 atomic regions from SNP 174628 to 175228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,496 DEBUG Processing 377/644 atomic regions from SNP 113017 to 113617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,525 DEBUG Processing 595/853 atomic regions from SNP 178488 to 179088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,611 DEBUG Processing 36/232 atomic regions from SNP 10533 to 11133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,616 DEBUG Processing 446/1017 atomic regions from SNP 133718 to 134318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,707 DEBUG Processing 584/893 atomic regions from SNP 174928 to 175528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,735 DEBUG Processing 459/1128 atomic regions from SNP 137669 to 138269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,757 DEBUG Processing 378/644 atomic regions from SNP 113317 to 113917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,761 DEBUG Processing 596/853 atomic regions from SNP 178788 to 179388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,836 DEBUG Processing 37/232 atomic regions from SNP 10833 to 11433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:44,876 DEBUG Processing 447/1017 atomic regions from SNP 134018 to 134618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,940 DEBUG Processing 585/893 atomic regions from SNP 175228 to 175828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,992 DEBUG Processing 597/853 atomic regions from SNP 179088 to 179688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,995 DEBUG Processing 379/644 atomic regions from SNP 113617 to 114217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,999 DEBUG Processing 460/1128 atomic regions from SNP 137969 to 138569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,061 DEBUG Processing 38/232 atomic regions from SNP 11133 to 11733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,131 DEBUG Processing 448/1017 atomic regions from SNP 134318 to 134918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,179 DEBUG Processing 586/893 atomic regions from SNP 175528 to 176128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,223 DEBUG Processing 380/644 atomic regions from SNP 113917 to 114517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,268 DEBUG Processing 598/853 atomic regions from SNP 179388 to 179988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,271 DEBUG Processing 461/1128 atomic regions from SNP 138269 to 138869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,291 DEBUG Processing 39/232 atomic regions from SNP 11433 to 12033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,392 DEBUG Processing 449/1017 atomic regions from SNP 134618 to 135218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,411 DEBUG Processing 587/893 atomic regions from SNP 175828 to 176428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,452 DEBUG Processing 381/644 atomic regions from SNP 114217 to 114817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,524 DEBUG Processing 40/232 atomic regions from SNP 11733 to 12333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,535 DEBUG Processing 599/853 atomic regions from SNP 179688 to 180288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,549 DEBUG Processing 462/1128 atomic regions from SNP 138569 to 139169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,651 DEBUG Processing 588/893 atomic regions from SNP 176128 to 176728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,654 DEBUG Processing 450/1017 atomic regions from SNP 134918 to 135518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,688 DEBUG Processing 382/644 atomic regions from SNP 114517 to 115117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,754 DEBUG Processing 41/232 atomic regions from SNP 12033 to 12633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:45,806 DEBUG Processing 600/853 atomic regions from SNP 179988 to 180588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,831 DEBUG Processing 463/1128 atomic regions from SNP 138869 to 139469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,893 DEBUG Processing 589/893 atomic regions from SNP 176428 to 177028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,920 DEBUG Processing 451/1017 atomic regions from SNP 135218 to 135818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,927 DEBUG Processing 383/644 atomic regions from SNP 114817 to 115417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,978 DEBUG Processing 42/232 atomic regions from SNP 12333 to 12933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,072 DEBUG Processing 601/853 atomic regions from SNP 180288 to 180888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,106 DEBUG Processing 464/1128 atomic regions from SNP 139169 to 139769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,154 DEBUG Processing 590/893 atomic regions from SNP 176728 to 177328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,167 DEBUG Processing 384/644 atomic regions from SNP 115117 to 115717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,187 DEBUG Processing 452/1017 atomic regions from SNP 135518 to 136118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,210 DEBUG Processing 43/232 atomic regions from SNP 12633 to 13233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,336 DEBUG Processing 602/853 atomic regions from SNP 180588 to 181188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,395 DEBUG Processing 465/1128 atomic regions from SNP 139469 to 140069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,409 DEBUG Processing 385/644 atomic regions from SNP 115417 to 116017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,426 DEBUG Processing 591/893 atomic regions from SNP 177028 to 177628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,447 DEBUG Processing 44/232 atomic regions from SNP 12933 to 13533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,454 DEBUG Processing 453/1017 atomic regions from SNP 135818 to 136418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,587 DEBUG Processing 603/853 atomic regions from SNP 180888 to 181488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,647 DEBUG Processing 386/644 atomic regions from SNP 115717 to 116317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,689 DEBUG Processing 45/232 atomic regions from SNP 13233 to 13833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,700 DEBUG Processing 592/893 atomic regions from SNP 177328 to 177928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,705 DEBUG Processing 466/1128 atomic regions from SNP 139769 to 140369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,716 DEBUG Processing 454/1017 atomic regions from SNP 136118 to 136718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,830 DEBUG Processing 604/853 atomic regions from SNP 181188 to 181788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,884 DEBUG Processing 387/644 atomic regions from SNP 116017 to 116617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,940 DEBUG Processing 46/232 atomic regions from SNP 13533 to 14133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:46,969 DEBUG Processing 593/893 atomic regions from SNP 177628 to 178228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,986 DEBUG Processing 455/1017 atomic regions from SNP 136418 to 137018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,007 DEBUG Processing 467/1128 atomic regions from SNP 140069 to 140669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,093 DEBUG Processing 605/853 atomic regions from SNP 181488 to 182088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,122 DEBUG Processing 388/644 atomic regions from SNP 116317 to 116917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,205 DEBUG Processing 47/232 atomic regions from SNP 13833 to 14433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,250 DEBUG Processing 594/893 atomic regions from SNP 177928 to 178528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,254 DEBUG Processing 456/1017 atomic regions from SNP 136718 to 137318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,300 DEBUG Processing 468/1128 atomic regions from SNP 140369 to 140969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,351 DEBUG Processing 606/853 atomic regions from SNP 181788 to 182388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,360 DEBUG Processing 389/644 atomic regions from SNP 116617 to 117217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,434 DEBUG Processing 48/232 atomic regions from SNP 14133 to 14733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,512 DEBUG Processing 457/1017 atomic regions from SNP 137018 to 137618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,530 DEBUG Processing 595/893 atomic regions from SNP 178228 to 178828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,583 DEBUG Processing 469/1128 atomic regions from SNP 140669 to 141269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,597 DEBUG Processing 607/853 atomic regions from SNP 182088 to 182688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,601 DEBUG Processing 390/644 atomic regions from SNP 116917 to 117517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,661 DEBUG Processing 49/232 atomic regions from SNP 14433 to 15033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:47,766 DEBUG Processing 458/1017 atomic regions from SNP 137318 to 137918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,816 DEBUG Processing 596/893 atomic regions from SNP 178528 to 179128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,847 DEBUG Processing 391/644 atomic regions from SNP 117217 to 117817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,852 DEBUG Processing 608/853 atomic regions from SNP 182388 to 182988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,881 DEBUG Processing 470/1128 atomic regions from SNP 140969 to 141569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,899 DEBUG Processing 50/232 atomic regions from SNP 14733 to 15333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,021 DEBUG Processing 459/1017 atomic regions from SNP 137618 to 138218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,093 DEBUG Processing 392/644 atomic regions from SNP 117517 to 118117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,113 DEBUG Processing 597/893 atomic regions from SNP 178828 to 179428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,133 DEBUG Processing 609/853 atomic regions from SNP 182688 to 183288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,158 DEBUG Processing 51/232 atomic regions from SNP 15033 to 15633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,199 DEBUG Processing 471/1128 atomic regions from SNP 141269 to 141869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,289 DEBUG Processing 460/1017 atomic regions from SNP 137918 to 138518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,342 DEBUG Processing 393/644 atomic regions from SNP 117817 to 118417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,387 DEBUG Processing 610/853 atomic regions from SNP 182988 to 183588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,405 DEBUG Processing 598/893 atomic regions from SNP 179128 to 179728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,409 DEBUG Processing 52/232 atomic regions from SNP 15333 to 15933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,490 DEBUG Processing 472/1128 atomic regions from SNP 141569 to 142169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,560 DEBUG Processing 461/1017 atomic regions from SNP 138218 to 138818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,587 DEBUG Processing 394/644 atomic regions from SNP 118117 to 118717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,639 DEBUG Processing 611/853 atomic regions from SNP 183288 to 183888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,650 DEBUG Processing 53/232 atomic regions from SNP 15633 to 16233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,686 DEBUG Processing 599/893 atomic regions from SNP 179428 to 180028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,779 DEBUG Processing 473/1128 atomic regions from SNP 141869 to 142469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,836 DEBUG Processing 395/644 atomic regions from SNP 118417 to 119017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,841 DEBUG Processing 462/1017 atomic regions from SNP 138518 to 139118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,889 DEBUG Processing 54/232 atomic regions from SNP 15933 to 16533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:48,912 DEBUG Processing 612/853 atomic regions from SNP 183588 to 184188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,962 DEBUG Processing 600/893 atomic regions from SNP 179728 to 180328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,067 DEBUG Processing 474/1128 atomic regions from SNP 142169 to 142769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,076 DEBUG Processing 396/644 atomic regions from SNP 118717 to 119317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,106 DEBUG Processing 463/1017 atomic regions from SNP 138818 to 139418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,137 DEBUG Processing 55/232 atomic regions from SNP 16233 to 16833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,168 DEBUG Processing 613/853 atomic regions from SNP 183888 to 184488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,236 DEBUG Processing 601/893 atomic regions from SNP 180028 to 180628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,322 DEBUG Processing 397/644 atomic regions from SNP 119017 to 119617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,359 DEBUG Processing 475/1128 atomic regions from SNP 142469 to 143069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,373 DEBUG Processing 464/1017 atomic regions from SNP 139118 to 139718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,376 DEBUG Processing 56/232 atomic regions from SNP 16533 to 17133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,410 DEBUG Processing 614/853 atomic regions from SNP 184188 to 184788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,486 DEBUG Processing 602/893 atomic regions from SNP 180328 to 180928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,559 DEBUG Processing 398/644 atomic regions from SNP 119317 to 119917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,624 DEBUG Processing 57/232 atomic regions from SNP 16833 to 17433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,636 DEBUG Processing 465/1017 atomic regions from SNP 139418 to 140018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,648 DEBUG Processing 476/1128 atomic regions from SNP 142769 to 143369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,657 DEBUG Processing 615/853 atomic regions from SNP 184488 to 185088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,736 DEBUG Processing 603/893 atomic regions from SNP 180628 to 181228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,792 DEBUG Processing 399/644 atomic regions from SNP 119617 to 120217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,862 DEBUG Processing 58/232 atomic regions from SNP 17133 to 17733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:49,905 DEBUG Processing 616/853 atomic regions from SNP 184788 to 185388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,908 DEBUG Processing 466/1017 atomic regions from SNP 139718 to 140318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,937 DEBUG Processing 477/1128 atomic regions from SNP 143069 to 143669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,989 DEBUG Processing 604/893 atomic regions from SNP 180928 to 181528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,028 DEBUG Processing 400/644 atomic regions from SNP 119917 to 120517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,131 DEBUG Processing 59/232 atomic regions from SNP 17433 to 18033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,157 DEBUG Processing 617/853 atomic regions from SNP 185088 to 185688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,181 DEBUG Processing 467/1017 atomic regions from SNP 140018 to 140618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,241 DEBUG Processing 605/893 atomic regions from SNP 181228 to 181828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,253 DEBUG Processing 401/644 atomic regions from SNP 120217 to 120817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,258 DEBUG Processing 478/1128 atomic regions from SNP 143369 to 143969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,358 DEBUG Processing 60/232 atomic regions from SNP 17733 to 18333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,393 DEBUG Processing 618/853 atomic regions from SNP 185388 to 185988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,437 DEBUG Processing 468/1017 atomic regions from SNP 140318 to 140918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,484 DEBUG Processing 402/644 atomic regions from SNP 120517 to 121117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,485 DEBUG Processing 606/893 atomic regions from SNP 181528 to 182128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,560 DEBUG Processing 479/1128 atomic regions from SNP 143669 to 144269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,585 DEBUG Processing 61/232 atomic regions from SNP 18033 to 18633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,631 DEBUG Processing 619/853 atomic regions from SNP 185688 to 186288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,697 DEBUG Processing 469/1017 atomic regions from SNP 140618 to 141218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,724 DEBUG Processing 403/644 atomic regions from SNP 120817 to 121417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,725 DEBUG Processing 607/893 atomic regions from SNP 181828 to 182428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,817 DEBUG Processing 62/232 atomic regions from SNP 18333 to 18933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:50,857 DEBUG Processing 480/1128 atomic regions from SNP 143969 to 144569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,869 DEBUG Processing 620/853 atomic regions from SNP 185988 to 186588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,968 DEBUG Processing 608/893 atomic regions from SNP 182128 to 182728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,968 DEBUG Processing 404/644 atomic regions from SNP 121117 to 121717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,968 DEBUG Processing 470/1017 atomic regions from SNP 140918 to 141518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,049 DEBUG Processing 63/232 atomic regions from SNP 18633 to 19233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,133 DEBUG Processing 621/853 atomic regions from SNP 186288 to 186888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,151 DEBUG Processing 481/1128 atomic regions from SNP 144269 to 144869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,214 DEBUG Processing 609/893 atomic regions from SNP 182428 to 183028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,214 DEBUG Processing 405/644 atomic regions from SNP 121417 to 122017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,241 DEBUG Processing 471/1017 atomic regions from SNP 141218 to 141818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,280 DEBUG Processing 64/232 atomic regions from SNP 18933 to 19533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,407 DEBUG Processing 622/853 atomic regions from SNP 186588 to 187188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,452 DEBUG Processing 482/1128 atomic regions from SNP 144569 to 145169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,463 DEBUG Processing 610/893 atomic regions from SNP 182728 to 183328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,472 DEBUG Processing 406/644 atomic regions from SNP 121717 to 122317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,508 DEBUG Processing 65/232 atomic regions from SNP 19233 to 19833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,510 DEBUG Processing 472/1017 atomic regions from SNP 141518 to 142118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,670 DEBUG Processing 623/853 atomic regions from SNP 186888 to 187488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,707 DEBUG Processing 611/893 atomic regions from SNP 183028 to 183628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,743 DEBUG Processing 407/644 atomic regions from SNP 122017 to 122617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,749 DEBUG Processing 66/232 atomic regions from SNP 19533 to 20133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:51,766 DEBUG Processing 483/1128 atomic regions from SNP 144869 to 145469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,781 DEBUG Processing 473/1017 atomic regions from SNP 141818 to 142418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,936 DEBUG Processing 624/853 atomic regions from SNP 187188 to 187788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,953 DEBUG Processing 612/893 atomic regions from SNP 183328 to 183928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,988 DEBUG Processing 408/644 atomic regions from SNP 122317 to 122917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,988 DEBUG Processing 67/232 atomic regions from SNP 19833 to 20433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,054 DEBUG Processing 474/1017 atomic regions from SNP 142118 to 142718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,088 DEBUG Processing 484/1128 atomic regions from SNP 145169 to 145769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,198 DEBUG Processing 613/893 atomic regions from SNP 183628 to 184228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,199 DEBUG Processing 625/853 atomic regions from SNP 187488 to 188088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,230 DEBUG Processing 68/232 atomic regions from SNP 20133 to 20733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,231 DEBUG Processing 409/644 atomic regions from SNP 122617 to 123217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,328 DEBUG Processing 475/1017 atomic regions from SNP 142418 to 143018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,396 DEBUG Processing 485/1128 atomic regions from SNP 145469 to 146069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,440 DEBUG Processing 614/893 atomic regions from SNP 183928 to 184528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,462 DEBUG Processing 626/853 atomic regions from SNP 187788 to 188388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,467 DEBUG Processing 69/232 atomic regions from SNP 20433 to 21033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,483 DEBUG Processing 410/644 atomic regions from SNP 122917 to 123517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,598 DEBUG Processing 476/1017 atomic regions from SNP 142718 to 143318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,686 DEBUG Processing 615/893 atomic regions from SNP 184228 to 184828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,702 DEBUG Processing 486/1128 atomic regions from SNP 145769 to 146369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,706 DEBUG Processing 70/232 atomic regions from SNP 20733 to 21333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,742 DEBUG Processing 627/853 atomic regions from SNP 188088 to 188688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,746 DEBUG Processing 411/644 atomic regions from SNP 123217 to 123817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,858 DEBUG Processing 477/1017 atomic regions from SNP 143018 to 143618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,934 DEBUG Processing 616/893 atomic regions from SNP 184528 to 185128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,949 DEBUG Processing 71/232 atomic regions from SNP 21033 to 21633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:52,997 DEBUG Processing 487/1128 atomic regions from SNP 146069 to 146669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,010 DEBUG Processing 412/644 atomic regions from SNP 123517 to 124117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,019 DEBUG Processing 628/853 atomic regions from SNP 188388 to 188988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,122 DEBUG Processing 478/1017 atomic regions from SNP 143318 to 143918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,183 DEBUG Processing 617/893 atomic regions from SNP 184828 to 185428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,185 DEBUG Processing 72/232 atomic regions from SNP 21333 to 21933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,273 DEBUG Processing 413/644 atomic regions from SNP 123817 to 124417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,287 DEBUG Processing 488/1128 atomic regions from SNP 146369 to 146969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,291 DEBUG Processing 629/853 atomic regions from SNP 188688 to 189288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,395 DEBUG Processing 479/1017 atomic regions from SNP 143618 to 144218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,425 DEBUG Processing 73/232 atomic regions from SNP 21633 to 22233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,433 DEBUG Processing 618/893 atomic regions from SNP 185128 to 185728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,514 DEBUG Processing 414/644 atomic regions from SNP 124117 to 124717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,563 DEBUG Processing 630/853 atomic regions from SNP 188988 to 189588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,595 DEBUG Processing 489/1128 atomic regions from SNP 146669 to 147269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,659 DEBUG Processing 480/1017 atomic regions from SNP 143918 to 144518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,667 DEBUG Processing 74/232 atomic regions from SNP 21933 to 22533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,680 DEBUG Processing 619/893 atomic regions from SNP 185428 to 186028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,766 DEBUG Processing 415/644 atomic regions from SNP 124417 to 125017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,837 DEBUG Processing 631/853 atomic regions from SNP 189288 to 189888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,896 DEBUG Processing 490/1128 atomic regions from SNP 146969 to 147569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,907 DEBUG Processing 75/232 atomic regions from SNP 22233 to 22833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:53,922 DEBUG Processing 481/1017 atomic regions from SNP 144218 to 144818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,933 DEBUG Processing 620/893 atomic regions from SNP 185728 to 186328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,034 DEBUG Processing 416/644 atomic regions from SNP 124717 to 125317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,106 DEBUG Processing 632/853 atomic regions from SNP 189588 to 190188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,143 DEBUG Processing 76/232 atomic regions from SNP 22533 to 23133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,177 DEBUG Processing 621/893 atomic regions from SNP 186028 to 186628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,189 DEBUG Processing 491/1128 atomic regions from SNP 147269 to 147869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,203 DEBUG Processing 482/1017 atomic regions from SNP 144518 to 145118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,294 DEBUG Processing 417/644 atomic regions from SNP 125017 to 125617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,376 DEBUG Processing 77/232 atomic regions from SNP 22833 to 23433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,377 DEBUG Processing 633/853 atomic regions from SNP 189888 to 190488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,422 DEBUG Processing 622/893 atomic regions from SNP 186328 to 186928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,500 DEBUG Processing 483/1017 atomic regions from SNP 144818 to 145418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,503 DEBUG Processing 492/1128 atomic regions from SNP 147569 to 148169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,557 DEBUG Processing 418/644 atomic regions from SNP 125317 to 125917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,602 DEBUG Processing 78/232 atomic regions from SNP 23133 to 23733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,617 DEBUG Processing 634/853 atomic regions from SNP 190188 to 190788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,667 DEBUG Processing 623/893 atomic regions from SNP 186628 to 187228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,796 DEBUG Processing 484/1017 atomic regions from SNP 145118 to 145718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,812 DEBUG Processing 493/1128 atomic regions from SNP 147869 to 148469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,832 DEBUG Processing 419/644 atomic regions from SNP 125617 to 126217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,844 DEBUG Processing 79/232 atomic regions from SNP 23433 to 24033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:54,868 DEBUG Processing 635/853 atomic regions from SNP 190488 to 191088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:54,905 DEBUG Processing 624/893 atomic regions from SNP 186928 to 187528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,088 DEBUG Processing 485/1017 atomic regions from SNP 145418 to 146018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,098 DEBUG Processing 420/644 atomic regions from SNP 125917 to 126517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,102 DEBUG Processing 80/232 atomic regions from SNP 23733 to 24333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,115 DEBUG Processing 494/1128 atomic regions from SNP 148169 to 148769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,139 DEBUG Processing 636/853 atomic regions from SNP 190788 to 191388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,151 DEBUG Processing 625/893 atomic regions from SNP 187228 to 187828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,347 DEBUG Processing 486/1017 atomic regions from SNP 145718 to 146318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,349 DEBUG Processing 81/232 atomic regions from SNP 24033 to 24633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,355 DEBUG Processing 421/644 atomic regions from SNP 126217 to 126817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,394 DEBUG Processing 637/853 atomic regions from SNP 191088 to 191688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,407 DEBUG Processing 626/893 atomic regions from SNP 187528 to 188128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,414 DEBUG Processing 495/1128 atomic regions from SNP 148469 to 149069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,585 DEBUG Processing 82/232 atomic regions from SNP 24333 to 24933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,595 DEBUG Processing 422/644 atomic regions from SNP 126517 to 127117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,601 DEBUG Processing 487/1017 atomic regions from SNP 146018 to 146618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,638 DEBUG Processing 638/853 atomic regions from SNP 191388 to 191988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,658 DEBUG Processing 627/893 atomic regions from SNP 187828 to 188428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,726 DEBUG Processing 496/1128 atomic regions from SNP 148769 to 149369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,816 DEBUG Processing 83/232 atomic regions from SNP 24633 to 25233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:55,855 DEBUG Processing 423/644 atomic regions from SNP 126817 to 127417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,857 DEBUG Processing 488/1017 atomic regions from SNP 146318 to 146918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,886 DEBUG Processing 639/853 atomic regions from SNP 191688 to 192288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:55,903 DEBUG Processing 628/893 atomic regions from SNP 188128 to 188728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,021 DEBUG Processing 497/1128 atomic regions from SNP 149069 to 149669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,043 DEBUG Processing 84/232 atomic regions from SNP 24933 to 25533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,118 DEBUG Processing 424/644 atomic regions from SNP 127117 to 127717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,121 DEBUG Processing 489/1017 atomic regions from SNP 146618 to 147218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,131 DEBUG Processing 640/853 atomic regions from SNP 191988 to 192588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,152 DEBUG Processing 629/893 atomic regions from SNP 188428 to 189028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,264 DEBUG Processing 85/232 atomic regions from SNP 25233 to 25833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,309 DEBUG Processing 498/1128 atomic regions from SNP 149369 to 149969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,369 DEBUG Processing 425/644 atomic regions from SNP 127417 to 128017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,369 DEBUG Processing 641/853 atomic regions from SNP 192288 to 192888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,379 DEBUG Processing 490/1017 atomic regions from SNP 146918 to 147518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,393 DEBUG Processing 630/893 atomic regions from SNP 188728 to 189328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,494 DEBUG Processing 86/232 atomic regions from SNP 25533 to 26133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,589 DEBUG Processing 499/1128 atomic regions from SNP 149669 to 150269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,622 DEBUG Processing 426/644 atomic regions from SNP 127717 to 128317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,629 DEBUG Processing 642/853 atomic regions from SNP 192588 to 193188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,635 DEBUG Processing 631/893 atomic regions from SNP 189028 to 189628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,642 DEBUG Processing 491/1017 atomic regions from SNP 147218 to 147818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,730 DEBUG Processing 87/232 atomic regions from SNP 25833 to 26433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:56,868 DEBUG Processing 500/1128 atomic regions from SNP 149969 to 150569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,877 DEBUG Processing 427/644 atomic regions from SNP 128017 to 128617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,878 DEBUG Processing 632/893 atomic regions from SNP 189328 to 189928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,898 DEBUG Processing 643/853 atomic regions from SNP 192888 to 193488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:56,900 DEBUG Processing 492/1017 atomic regions from SNP 147518 to 148118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,966 DEBUG Processing 88/232 atomic regions from SNP 26133 to 26733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,118 DEBUG Processing 428/644 atomic regions from SNP 128317 to 128917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,121 DEBUG Processing 633/893 atomic regions from SNP 189628 to 190228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,146 DEBUG Processing 501/1128 atomic regions from SNP 150269 to 150869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,164 DEBUG Processing 493/1017 atomic regions from SNP 147818 to 148418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,173 DEBUG Processing 644/853 atomic regions from SNP 193188 to 193788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,207 DEBUG Processing 89/232 atomic regions from SNP 26433 to 27033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,359 DEBUG Processing 429/644 atomic regions from SNP 128617 to 129217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,362 DEBUG Processing 634/893 atomic regions from SNP 189928 to 190528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,426 DEBUG Processing 502/1128 atomic regions from SNP 150569 to 151169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,434 DEBUG Processing 494/1017 atomic regions from SNP 148118 to 148718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,438 DEBUG Processing 645/853 atomic regions from SNP 193488 to 194088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,455 DEBUG Processing 90/232 atomic regions from SNP 26733 to 27333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,640 DEBUG Processing 635/893 atomic regions from SNP 190228 to 190828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,649 DEBUG Processing 430/644 atomic regions from SNP 128917 to 129517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,692 DEBUG Processing 646/853 atomic regions from SNP 193788 to 194388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,707 DEBUG Processing 495/1017 atomic regions from SNP 148418 to 149018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,726 DEBUG Processing 503/1128 atomic regions from SNP 150869 to 151469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,739 DEBUG Processing 91/232 atomic regions from SNP 27033 to 27633 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:57,883 DEBUG Processing 636/893 atomic regions from SNP 190528 to 191128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,925 DEBUG Processing 431/644 atomic regions from SNP 129217 to 129817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:57,941 DEBUG Processing 647/853 atomic regions from SNP 194088 to 194688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:57,976 DEBUG Processing 496/1017 atomic regions from SNP 148718 to 149318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,002 DEBUG Processing 92/232 atomic regions from SNP 27333 to 27933 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,013 DEBUG Processing 504/1128 atomic regions from SNP 151169 to 151769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,132 DEBUG Processing 637/893 atomic regions from SNP 190828 to 191428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,201 DEBUG Processing 432/644 atomic regions from SNP 129517 to 130117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,210 DEBUG Processing 648/853 atomic regions from SNP 194388 to 194988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,244 DEBUG Processing 497/1017 atomic regions from SNP 149018 to 149618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,248 DEBUG Processing 93/232 atomic regions from SNP 27633 to 28233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,298 DEBUG Processing 505/1128 atomic regions from SNP 151469 to 152069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,394 DEBUG Processing 638/893 atomic regions from SNP 191128 to 191728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,459 DEBUG Processing 433/644 atomic regions from SNP 129817 to 130417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,463 DEBUG Processing 649/853 atomic regions from SNP 194688 to 195288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,484 DEBUG Processing 94/232 atomic regions from SNP 27933 to 28533 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,511 DEBUG Processing 498/1017 atomic regions from SNP 149318 to 149918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,576 DEBUG Processing 506/1128 atomic regions from SNP 151769 to 152369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,648 DEBUG Processing 639/893 atomic regions from SNP 191428 to 192028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,696 DEBUG Processing 434/644 atomic regions from SNP 130117 to 130717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,719 DEBUG Processing 650/853 atomic regions from SNP 194988 to 195588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:58,723 DEBUG Processing 95/232 atomic regions from SNP 28233 to 28833 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,789 DEBUG Processing 499/1017 atomic regions from SNP 149618 to 150218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,864 DEBUG Processing 507/1128 atomic regions from SNP 152069 to 152669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,894 DEBUG Processing 640/893 atomic regions from SNP 191728 to 192328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,942 DEBUG Processing 435/644 atomic regions from SNP 130417 to 131017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:58,966 DEBUG Processing 96/232 atomic regions from SNP 28533 to 29133 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:58,994 DEBUG Processing 651/853 atomic regions from SNP 195288 to 195888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,066 DEBUG Processing 500/1017 atomic regions from SNP 149918 to 150518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,161 DEBUG Processing 641/893 atomic regions from SNP 192028 to 192628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,179 DEBUG Processing 508/1128 atomic regions from SNP 152369 to 152969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,180 DEBUG Processing 436/644 atomic regions from SNP 130717 to 131317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,208 DEBUG Processing 97/232 atomic regions from SNP 28833 to 29433 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,260 DEBUG Processing 652/853 atomic regions from SNP 195588 to 196188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,336 DEBUG Processing 501/1017 atomic regions from SNP 150218 to 150818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,418 DEBUG Processing 437/644 atomic regions from SNP 131017 to 131617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,436 DEBUG Processing 642/893 atomic regions from SNP 192328 to 192928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,441 DEBUG Processing 98/232 atomic regions from SNP 29133 to 29733 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,485 DEBUG Processing 509/1128 atomic regions from SNP 152669 to 153269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,500 DEBUG Processing 653/853 atomic regions from SNP 195888 to 196488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,604 DEBUG Processing 502/1017 atomic regions from SNP 150518 to 151118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,670 DEBUG Processing 438/644 atomic regions from SNP 131317 to 131917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,672 DEBUG Processing 99/232 atomic regions from SNP 29433 to 30033 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,711 DEBUG Processing 643/893 atomic regions from SNP 192628 to 193228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,743 DEBUG Processing 654/853 atomic regions from SNP 196188 to 196788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,789 DEBUG Processing 510/1128 atomic regions from SNP 152969 to 153569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,875 DEBUG Processing 503/1017 atomic regions from SNP 150818 to 151418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,906 DEBUG Processing 100/232 atomic regions from SNP 29733 to 30333 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:59,914 DEBUG Processing 439/644 atomic regions from SNP 131617 to 132217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:59,982 DEBUG Processing 655/853 atomic regions from SNP 196488 to 197088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:59,988 DEBUG Processing 644/893 atomic regions from SNP 192928 to 193528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,093 DEBUG Processing 511/1128 atomic regions from SNP 153269 to 153869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,138 DEBUG Processing 101/232 atomic regions from SNP 30033 to 30633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,142 DEBUG Processing 504/1017 atomic regions from SNP 151118 to 151718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,180 DEBUG Processing 440/644 atomic regions from SNP 131917 to 132517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,223 DEBUG Processing 656/853 atomic regions from SNP 196788 to 197388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,252 DEBUG Processing 645/893 atomic regions from SNP 193228 to 193828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,364 DEBUG Processing 512/1128 atomic regions from SNP 153569 to 154169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,369 DEBUG Processing 102/232 atomic regions from SNP 30333 to 30933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,408 DEBUG Processing 505/1017 atomic regions from SNP 151418 to 152018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,458 DEBUG Processing 441/644 atomic regions from SNP 132217 to 132817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,463 DEBUG Processing 657/853 atomic regions from SNP 197088 to 197688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,491 DEBUG Processing 646/893 atomic regions from SNP 193528 to 194128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,597 DEBUG Processing 103/232 atomic regions from SNP 30633 to 31233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,640 DEBUG Processing 513/1128 atomic regions from SNP 153869 to 154469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,676 DEBUG Processing 506/1017 atomic regions from SNP 151718 to 152318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,703 DEBUG Processing 658/853 atomic regions from SNP 197388 to 197988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,727 DEBUG Processing 442/644 atomic regions from SNP 132517 to 133117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:00,734 DEBUG Processing 647/893 atomic regions from SNP 193828 to 194428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,823 DEBUG Processing 104/232 atomic regions from SNP 30933 to 31533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:00,935 DEBUG Processing 514/1128 atomic regions from SNP 154169 to 154769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,946 DEBUG Processing 659/853 atomic regions from SNP 197688 to 198288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:00,950 DEBUG Processing 507/1017 atomic regions from SNP 152018 to 152618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,979 DEBUG Processing 648/893 atomic regions from SNP 194128 to 194728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,982 DEBUG Processing 443/644 atomic regions from SNP 132817 to 133417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,047 DEBUG Processing 105/232 atomic regions from SNP 31233 to 31833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,183 DEBUG Processing 660/853 atomic regions from SNP 197988 to 198588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,215 DEBUG Processing 508/1017 atomic regions from SNP 152318 to 152918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,222 DEBUG Processing 444/644 atomic regions from SNP 133117 to 133717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,225 DEBUG Processing 649/893 atomic regions from SNP 194428 to 195028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,251 DEBUG Processing 515/1128 atomic regions from SNP 154469 to 155069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,279 DEBUG Processing 106/232 atomic regions from SNP 31533 to 32133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,433 DEBUG Processing 661/853 atomic regions from SNP 198288 to 198888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,463 DEBUG Processing 445/644 atomic regions from SNP 133417 to 134017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,470 DEBUG Processing 650/893 atomic regions from SNP 194728 to 195328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,480 DEBUG Processing 509/1017 atomic regions from SNP 152618 to 153218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,517 DEBUG Processing 107/232 atomic regions from SNP 31833 to 32433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,576 DEBUG Processing 516/1128 atomic regions from SNP 154769 to 155369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,690 DEBUG Processing 662/853 atomic regions from SNP 198588 to 199188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,701 DEBUG Processing 446/644 atomic regions from SNP 133717 to 134317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,708 DEBUG Processing 651/893 atomic regions from SNP 195028 to 195628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,750 DEBUG Processing 510/1017 atomic regions from SNP 152918 to 153518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,758 DEBUG Processing 108/232 atomic regions from SNP 32133 to 32733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:01,880 DEBUG Processing 517/1128 atomic regions from SNP 155069 to 155669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,939 DEBUG Processing 447/644 atomic regions from SNP 134017 to 134617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:01,943 DEBUG Processing 663/853 atomic regions from SNP 198888 to 199488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:01,949 DEBUG Processing 652/893 atomic regions from SNP 195328 to 195928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,998 DEBUG Processing 109/232 atomic regions from SNP 32433 to 33033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,018 DEBUG Processing 511/1017 atomic regions from SNP 153218 to 153818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,165 DEBUG Processing 518/1128 atomic regions from SNP 155369 to 155969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,174 DEBUG Processing 448/644 atomic regions from SNP 134317 to 134917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,190 DEBUG Processing 653/893 atomic regions from SNP 195628 to 196228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,211 DEBUG Processing 664/853 atomic regions from SNP 199188 to 199788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,238 DEBUG Processing 110/232 atomic regions from SNP 32733 to 33333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,283 DEBUG Processing 512/1017 atomic regions from SNP 153518 to 154118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,421 DEBUG Processing 449/644 atomic regions from SNP 134617 to 135217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,434 DEBUG Processing 654/893 atomic regions from SNP 195928 to 196528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,458 DEBUG Processing 519/1128 atomic regions from SNP 155669 to 156269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,479 DEBUG Processing 111/232 atomic regions from SNP 33033 to 33633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,489 DEBUG Processing 665/853 atomic regions from SNP 199488 to 200088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,552 DEBUG Processing 513/1017 atomic regions from SNP 153818 to 154418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,676 DEBUG Processing 450/644 atomic regions from SNP 134917 to 135517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,676 DEBUG Processing 655/893 atomic regions from SNP 196228 to 196828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,720 DEBUG Processing 112/232 atomic regions from SNP 33333 to 33933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:02,761 DEBUG Processing 666/853 atomic regions from SNP 199788 to 200388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:02,767 DEBUG Processing 520/1128 atomic regions from SNP 155969 to 156569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,830 DEBUG Processing 514/1017 atomic regions from SNP 154118 to 154718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,911 DEBUG Processing 656/893 atomic regions from SNP 196528 to 197128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,914 DEBUG Processing 451/644 atomic regions from SNP 135217 to 135817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:02,959 DEBUG Processing 113/232 atomic regions from SNP 33633 to 34233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,010 DEBUG Processing 667/853 atomic regions from SNP 200088 to 200688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,075 DEBUG Processing 521/1128 atomic regions from SNP 156269 to 156869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,106 DEBUG Processing 515/1017 atomic regions from SNP 154418 to 155018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,142 DEBUG Processing 657/893 atomic regions from SNP 196828 to 197428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,161 DEBUG Processing 452/644 atomic regions from SNP 135517 to 136117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,189 DEBUG Processing 114/232 atomic regions from SNP 33933 to 34533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,276 DEBUG Processing 668/853 atomic regions from SNP 200388 to 200988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,360 DEBUG Processing 522/1128 atomic regions from SNP 156569 to 157169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,380 DEBUG Processing 658/893 atomic regions from SNP 197128 to 197728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,393 DEBUG Processing 453/644 atomic regions from SNP 135817 to 136417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,395 DEBUG Processing 516/1017 atomic regions from SNP 154718 to 155318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,415 DEBUG Processing 115/232 atomic regions from SNP 34233 to 34833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,545 DEBUG Processing 669/853 atomic regions from SNP 200688 to 201288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,617 DEBUG Processing 659/893 atomic regions from SNP 197428 to 198028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,643 DEBUG Processing 523/1128 atomic regions from SNP 156869 to 157469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,643 DEBUG Processing 116/232 atomic regions from SNP 34533 to 35133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,652 DEBUG Processing 454/644 atomic regions from SNP 136117 to 136717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,691 DEBUG Processing 517/1017 atomic regions from SNP 155018 to 155618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,815 DEBUG Processing 670/853 atomic regions from SNP 200988 to 201588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:03,859 DEBUG Processing 660/893 atomic regions from SNP 197728 to 198328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,876 DEBUG Processing 117/232 atomic regions from SNP 34833 to 35433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:03,901 DEBUG Processing 455/644 atomic regions from SNP 136417 to 137017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:03,940 DEBUG Processing 524/1128 atomic regions from SNP 157169 to 157769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,988 DEBUG Processing 518/1017 atomic regions from SNP 155318 to 155918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,094 DEBUG Processing 671/853 atomic regions from SNP 201288 to 201888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,102 DEBUG Processing 661/893 atomic regions from SNP 198028 to 198628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,111 DEBUG Processing 118/232 atomic regions from SNP 35133 to 35733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,138 DEBUG Processing 456/644 atomic regions from SNP 136717 to 137317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,251 DEBUG Processing 525/1128 atomic regions from SNP 157469 to 158069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,276 DEBUG Processing 519/1017 atomic regions from SNP 155618 to 156218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,349 DEBUG Processing 119/232 atomic regions from SNP 35433 to 36033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,351 DEBUG Processing 662/893 atomic regions from SNP 198328 to 198928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,373 DEBUG Processing 672/853 atomic regions from SNP 201588 to 202188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,377 DEBUG Processing 457/644 atomic regions from SNP 137017 to 137617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,555 DEBUG Processing 526/1128 atomic regions from SNP 157769 to 158369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,556 DEBUG Processing 520/1017 atomic regions from SNP 155918 to 156518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,589 DEBUG Processing 120/232 atomic regions from SNP 35733 to 36333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,598 DEBUG Processing 663/893 atomic regions from SNP 198628 to 199228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,607 DEBUG Processing 458/644 atomic regions from SNP 137317 to 137917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,645 DEBUG Processing 673/853 atomic regions from SNP 201888 to 202488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:04,831 DEBUG Processing 121/232 atomic regions from SNP 36033 to 36633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:04,844 DEBUG Processing 521/1017 atomic regions from SNP 156218 to 156818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,848 DEBUG Processing 459/644 atomic regions from SNP 137617 to 138217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:04,853 DEBUG Processing 664/893 atomic regions from SNP 198928 to 199528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,882 DEBUG Processing 527/1128 atomic regions from SNP 158069 to 158669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,923 DEBUG Processing 674/853 atomic regions from SNP 202188 to 202788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,072 DEBUG Processing 122/232 atomic regions from SNP 36333 to 36933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,110 DEBUG Processing 665/893 atomic regions from SNP 199228 to 199828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,112 DEBUG Processing 460/644 atomic regions from SNP 137917 to 138517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,142 DEBUG Processing 522/1017 atomic regions from SNP 156518 to 157118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,206 DEBUG Processing 675/853 atomic regions from SNP 202488 to 203088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,208 DEBUG Processing 528/1128 atomic regions from SNP 158369 to 158969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,313 DEBUG Processing 123/232 atomic regions from SNP 36633 to 37233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,356 DEBUG Processing 666/893 atomic regions from SNP 199528 to 200128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,387 DEBUG Processing 461/644 atomic regions from SNP 138217 to 138817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,449 DEBUG Processing 523/1017 atomic regions from SNP 156818 to 157418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,485 DEBUG Processing 676/853 atomic regions from SNP 202788 to 203388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,524 DEBUG Processing 529/1128 atomic regions from SNP 158669 to 159269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,540 DEBUG Processing 124/232 atomic regions from SNP 36933 to 37533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,598 DEBUG Processing 667/893 atomic regions from SNP 199828 to 200428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,654 DEBUG Processing 462/644 atomic regions from SNP 138517 to 139117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:05,744 DEBUG Processing 524/1017 atomic regions from SNP 157118 to 157718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,759 DEBUG Processing 677/853 atomic regions from SNP 203088 to 203688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:05,779 DEBUG Processing 125/232 atomic regions from SNP 37233 to 37833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:05,836 DEBUG Processing 668/893 atomic regions from SNP 200128 to 200728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,846 DEBUG Processing 530/1128 atomic regions from SNP 158969 to 159569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,922 DEBUG Processing 463/644 atomic regions from SNP 138817 to 139417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,027 DEBUG Processing 126/232 atomic regions from SNP 37533 to 38133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,030 DEBUG Processing 525/1017 atomic regions from SNP 157418 to 158018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,037 DEBUG Processing 678/853 atomic regions from SNP 203388 to 203988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,081 DEBUG Processing 669/893 atomic regions from SNP 200428 to 201028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,152 DEBUG Processing 531/1128 atomic regions from SNP 159269 to 159869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,166 DEBUG Processing 464/644 atomic regions from SNP 139117 to 139717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,270 DEBUG Processing 127/232 atomic regions from SNP 37833 to 38433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,313 DEBUG Processing 679/853 atomic regions from SNP 203688 to 204288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,319 DEBUG Processing 526/1017 atomic regions from SNP 157718 to 158318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,345 DEBUG Processing 670/893 atomic regions from SNP 200728 to 201328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,411 DEBUG Processing 465/644 atomic regions from SNP 139417 to 140017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,419 DEBUG Processing 532/1128 atomic regions from SNP 159569 to 160169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,518 DEBUG Processing 128/232 atomic regions from SNP 38133 to 38733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,573 DEBUG Processing 527/1017 atomic regions from SNP 158018 to 158618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,589 DEBUG Processing 680/853 atomic regions from SNP 203988 to 204588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,616 DEBUG Processing 671/893 atomic regions from SNP 201028 to 201628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,652 DEBUG Processing 466/644 atomic regions from SNP 139717 to 140317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,691 DEBUG Processing 533/1128 atomic regions from SNP 159869 to 160469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,756 DEBUG Processing 129/232 atomic regions from SNP 38433 to 39033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:06,829 DEBUG Processing 528/1017 atomic regions from SNP 158318 to 158918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,858 DEBUG Processing 681/853 atomic regions from SNP 204288 to 204888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:06,868 DEBUG Processing 672/893 atomic regions from SNP 201328 to 201928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:06,888 DEBUG Processing 467/644 atomic regions from SNP 140017 to 140617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:06,969 DEBUG Processing 534/1128 atomic regions from SNP 160169 to 160769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,017 DEBUG Processing 130/232 atomic regions from SNP 38733 to 39333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,078 DEBUG Processing 529/1017 atomic regions from SNP 158618 to 159218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,111 DEBUG Processing 673/893 atomic regions from SNP 201628 to 202228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,123 DEBUG Processing 682/853 atomic regions from SNP 204588 to 205188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,138 DEBUG Processing 468/644 atomic regions from SNP 140317 to 140917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,244 DEBUG Processing 535/1128 atomic regions from SNP 160469 to 161069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,263 DEBUG Processing 131/232 atomic regions from SNP 39033 to 39633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,342 DEBUG Processing 530/1017 atomic regions from SNP 158918 to 159518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,363 DEBUG Processing 674/893 atomic regions from SNP 201928 to 202528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,377 DEBUG Processing 683/853 atomic regions from SNP 204888 to 205488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,390 DEBUG Processing 469/644 atomic regions from SNP 140617 to 141217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,508 DEBUG Processing 132/232 atomic regions from SNP 39333 to 39933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,517 DEBUG Processing 536/1128 atomic regions from SNP 160769 to 161369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,602 DEBUG Processing 531/1017 atomic regions from SNP 159218 to 159818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,612 DEBUG Processing 675/893 atomic regions from SNP 202228 to 202828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,638 DEBUG Processing 684/853 atomic regions from SNP 205188 to 205788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,654 DEBUG Processing 470/644 atomic regions from SNP 140917 to 141517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,751 DEBUG Processing 133/232 atomic regions from SNP 39633 to 40233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:07,794 DEBUG Processing 537/1128 atomic regions from SNP 161069 to 161669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,854 DEBUG Processing 532/1017 atomic regions from SNP 159518 to 160118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,879 DEBUG Processing 676/893 atomic regions from SNP 202528 to 203128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:07,890 DEBUG Processing 685/853 atomic regions from SNP 205488 to 206088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:07,913 DEBUG Processing 471/644 atomic regions from SNP 141217 to 141817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:07,982 DEBUG Processing 134/232 atomic regions from SNP 39933 to 40533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,063 DEBUG Processing 538/1128 atomic regions from SNP 161369 to 161969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,103 DEBUG Processing 533/1017 atomic regions from SNP 159818 to 160418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,149 DEBUG Processing 472/644 atomic regions from SNP 141517 to 142117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,161 DEBUG Processing 677/893 atomic regions from SNP 202828 to 203428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,165 DEBUG Processing 686/853 atomic regions from SNP 205788 to 206388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,217 DEBUG Processing 135/232 atomic regions from SNP 40233 to 40833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,338 DEBUG Processing 539/1128 atomic regions from SNP 161669 to 162269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,364 DEBUG Processing 534/1017 atomic regions from SNP 160118 to 160718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,407 DEBUG Processing 473/644 atomic regions from SNP 141817 to 142417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,440 DEBUG Processing 678/893 atomic regions from SNP 203128 to 203728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,454 DEBUG Processing 687/853 atomic regions from SNP 206088 to 206688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,460 DEBUG Processing 136/232 atomic regions from SNP 40533 to 41133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,608 DEBUG Processing 540/1128 atomic regions from SNP 161969 to 162569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,628 DEBUG Processing 535/1017 atomic regions from SNP 160418 to 161018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,669 DEBUG Processing 474/644 atomic regions from SNP 142117 to 142717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,700 DEBUG Processing 679/893 atomic regions from SNP 203428 to 204028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:08,701 DEBUG Processing 137/232 atomic regions from SNP 40833 to 41433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,735 DEBUG Processing 688/853 atomic regions from SNP 206388 to 206988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:08,885 DEBUG Processing 541/1128 atomic regions from SNP 162269 to 162869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,906 DEBUG Processing 536/1017 atomic regions from SNP 160718 to 161318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,938 DEBUG Processing 475/644 atomic regions from SNP 142417 to 143017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:08,939 DEBUG Processing 138/232 atomic regions from SNP 41133 to 41733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:08,944 DEBUG Processing 680/893 atomic regions from SNP 203728 to 204328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,015 DEBUG Processing 689/853 atomic regions from SNP 206688 to 207288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,169 DEBUG Processing 542/1128 atomic regions from SNP 162569 to 163169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,173 DEBUG Processing 139/232 atomic regions from SNP 41433 to 42033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,177 DEBUG Processing 537/1017 atomic regions from SNP 161018 to 161618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,186 DEBUG Processing 476/644 atomic regions from SNP 142717 to 143317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,202 DEBUG Processing 681/893 atomic regions from SNP 204028 to 204628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,277 DEBUG Processing 690/853 atomic regions from SNP 206988 to 207588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,415 DEBUG Processing 140/232 atomic regions from SNP 41733 to 42333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,430 DEBUG Processing 477/644 atomic regions from SNP 143017 to 143617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,451 DEBUG Processing 538/1017 atomic regions from SNP 161318 to 161918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,454 DEBUG Processing 543/1128 atomic regions from SNP 162869 to 163469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,460 DEBUG Processing 682/893 atomic regions from SNP 204328 to 204928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,539 DEBUG Processing 691/853 atomic regions from SNP 207288 to 207888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,649 DEBUG Processing 141/232 atomic regions from SNP 42033 to 42633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,683 DEBUG Processing 478/644 atomic regions from SNP 143317 to 143917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,723 DEBUG Processing 539/1017 atomic regions from SNP 161618 to 162218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,728 DEBUG Processing 683/893 atomic regions from SNP 204628 to 205228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:09,737 DEBUG Processing 544/1128 atomic regions from SNP 163169 to 163769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,790 DEBUG Processing 692/853 atomic regions from SNP 207588 to 208188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:09,879 DEBUG Processing 142/232 atomic regions from SNP 42333 to 42933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:09,927 DEBUG Processing 479/644 atomic regions from SNP 143617 to 144217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:09,999 DEBUG Processing 540/1017 atomic regions from SNP 161918 to 162518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,001 DEBUG Processing 684/893 atomic regions from SNP 204928 to 205528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,027 DEBUG Processing 545/1128 atomic regions from SNP 163469 to 164069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,052 DEBUG Processing 693/853 atomic regions from SNP 207888 to 208488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,109 DEBUG Processing 143/232 atomic regions from SNP 42633 to 43233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,162 DEBUG Processing 480/644 atomic regions from SNP 143917 to 144517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,264 DEBUG Processing 541/1017 atomic regions from SNP 162218 to 162818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,272 DEBUG Processing 685/893 atomic regions from SNP 205228 to 205828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,316 DEBUG Processing 546/1128 atomic regions from SNP 163769 to 164369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,328 DEBUG Processing 694/853 atomic regions from SNP 208188 to 208788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,338 DEBUG Processing 144/232 atomic regions from SNP 42933 to 43533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,396 DEBUG Processing 481/644 atomic regions from SNP 144217 to 144817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,516 DEBUG Processing 686/893 atomic regions from SNP 205528 to 206128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,528 DEBUG Processing 542/1017 atomic regions from SNP 162518 to 163118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,580 DEBUG Processing 145/232 atomic regions from SNP 43233 to 43833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,600 DEBUG Processing 695/853 atomic regions from SNP 208488 to 209088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,601 DEBUG Processing 547/1128 atomic regions from SNP 164069 to 164669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,637 DEBUG Processing 482/644 atomic regions from SNP 144517 to 145117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,755 DEBUG Processing 687/893 atomic regions from SNP 205828 to 206428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:10,790 DEBUG Processing 543/1017 atomic regions from SNP 162818 to 163418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,815 DEBUG Processing 146/232 atomic regions from SNP 43533 to 44133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:10,844 DEBUG Processing 696/853 atomic regions from SNP 208788 to 209388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:10,880 DEBUG Processing 483/644 atomic regions from SNP 144817 to 145417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:10,884 DEBUG Processing 548/1128 atomic regions from SNP 164369 to 164969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,989 DEBUG Processing 688/893 atomic regions from SNP 206128 to 206728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,053 DEBUG Processing 147/232 atomic regions from SNP 43833 to 44433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,058 DEBUG Processing 544/1017 atomic regions from SNP 163118 to 163718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,083 DEBUG Processing 697/853 atomic regions from SNP 209088 to 209688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,129 DEBUG Processing 484/644 atomic regions from SNP 145117 to 145717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,175 DEBUG Processing 549/1128 atomic regions from SNP 164669 to 165269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,230 DEBUG Processing 689/893 atomic regions from SNP 206428 to 207028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,275 DEBUG Processing 148/232 atomic regions from SNP 44133 to 44733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,314 DEBUG Processing 698/853 atomic regions from SNP 209388 to 209988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,321 DEBUG Processing 545/1017 atomic regions from SNP 163418 to 164018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,371 DEBUG Processing 485/644 atomic regions from SNP 145417 to 146017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,457 DEBUG Processing 550/1128 atomic regions from SNP 164969 to 165569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,479 DEBUG Processing 690/893 atomic regions from SNP 206728 to 207328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,506 DEBUG Processing 149/232 atomic regions from SNP 44433 to 45033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,561 DEBUG Processing 699/853 atomic regions from SNP 209688 to 210288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,587 DEBUG Processing 546/1017 atomic regions from SNP 163718 to 164318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,637 DEBUG Processing 486/644 atomic regions from SNP 145717 to 146317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,725 DEBUG Processing 691/893 atomic regions from SNP 207028 to 207628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,741 DEBUG Processing 150/232 atomic regions from SNP 44733 to 45333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:11,745 DEBUG Processing 551/1128 atomic regions from SNP 165269 to 165869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,804 DEBUG Processing 700/853 atomic regions from SNP 209988 to 210588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:11,850 DEBUG Processing 547/1017 atomic regions from SNP 164018 to 164618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,898 DEBUG Processing 487/644 atomic regions from SNP 146017 to 146617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:11,964 DEBUG Processing 692/893 atomic regions from SNP 207328 to 207928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:11,976 DEBUG Processing 151/232 atomic regions from SNP 45033 to 45633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,041 DEBUG Processing 552/1128 atomic regions from SNP 165569 to 166169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,047 DEBUG Processing 701/853 atomic regions from SNP 210288 to 210888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,113 DEBUG Processing 548/1017 atomic regions from SNP 164318 to 164918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,174 DEBUG Processing 488/644 atomic regions from SNP 146317 to 146917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,206 DEBUG Processing 693/893 atomic regions from SNP 207628 to 208228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,208 DEBUG Processing 152/232 atomic regions from SNP 45333 to 45933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,288 DEBUG Processing 702/853 atomic regions from SNP 210588 to 211188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,326 DEBUG Processing 553/1128 atomic regions from SNP 165869 to 166469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,378 DEBUG Processing 549/1017 atomic regions from SNP 164618 to 165218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,434 DEBUG Processing 153/232 atomic regions from SNP 45633 to 46233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,444 DEBUG Processing 489/644 atomic regions from SNP 146617 to 147217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,444 DEBUG Processing 694/893 atomic regions from SNP 207928 to 208528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,523 DEBUG Processing 703/853 atomic regions from SNP 210888 to 211488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,603 DEBUG Processing 554/1128 atomic regions from SNP 166169 to 166769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,644 DEBUG Processing 550/1017 atomic regions from SNP 164918 to 165518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,684 DEBUG Processing 154/232 atomic regions from SNP 45933 to 46533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,701 DEBUG Processing 695/893 atomic regions from SNP 208228 to 208828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,723 DEBUG Processing 490/644 atomic regions from SNP 146917 to 147517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:12,771 DEBUG Processing 704/853 atomic regions from SNP 211188 to 211788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:12,882 DEBUG Processing 555/1128 atomic regions from SNP 166469 to 167069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,911 DEBUG Processing 551/1017 atomic regions from SNP 165218 to 165818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,918 DEBUG Processing 155/232 atomic regions from SNP 46233 to 46833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:12,946 DEBUG Processing 696/893 atomic regions from SNP 208528 to 209128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:12,997 DEBUG Processing 491/644 atomic regions from SNP 147217 to 147817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,008 DEBUG Processing 705/853 atomic regions from SNP 211488 to 212088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,156 DEBUG Processing 156/232 atomic regions from SNP 46533 to 47133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,159 DEBUG Processing 556/1128 atomic regions from SNP 166769 to 167369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,171 DEBUG Processing 552/1017 atomic regions from SNP 165518 to 166118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,196 DEBUG Processing 697/893 atomic regions from SNP 208828 to 209428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,249 DEBUG Processing 706/853 atomic regions from SNP 211788 to 212388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,279 DEBUG Processing 492/644 atomic regions from SNP 147517 to 148117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,391 DEBUG Processing 157/232 atomic regions from SNP 46833 to 47433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,438 DEBUG Processing 557/1128 atomic regions from SNP 167069 to 167669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,440 DEBUG Processing 553/1017 atomic regions from SNP 165818 to 166418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,447 DEBUG Processing 698/893 atomic regions from SNP 209128 to 209728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,493 DEBUG Processing 707/853 atomic regions from SNP 212088 to 212688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,546 DEBUG Processing 493/644 atomic regions from SNP 147817 to 148417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,622 DEBUG Processing 158/232 atomic regions from SNP 47133 to 47733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,705 DEBUG Processing 554/1017 atomic regions from SNP 166118 to 166718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,709 DEBUG Processing 699/893 atomic regions from SNP 209428 to 210028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,744 DEBUG Processing 558/1128 atomic regions from SNP 167369 to 167969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,755 DEBUG Processing 708/853 atomic regions from SNP 212388 to 212988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:13,817 DEBUG Processing 494/644 atomic regions from SNP 148117 to 148717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:13,850 DEBUG Processing 159/232 atomic regions from SNP 47433 to 48033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:13,949 DEBUG Processing 700/893 atomic regions from SNP 209728 to 210328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:13,968 DEBUG Processing 555/1017 atomic regions from SNP 166418 to 167018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,998 DEBUG Processing 709/853 atomic regions from SNP 212688 to 213288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,022 DEBUG Processing 559/1128 atomic regions from SNP 167669 to 168269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,064 DEBUG Processing 495/644 atomic regions from SNP 148417 to 149017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,074 DEBUG Processing 160/232 atomic regions from SNP 47733 to 48333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,185 DEBUG Processing 701/893 atomic regions from SNP 210028 to 210628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,233 DEBUG Processing 556/1017 atomic regions from SNP 166718 to 167318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,239 DEBUG Processing 710/853 atomic regions from SNP 212988 to 213588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,303 DEBUG Processing 560/1128 atomic regions from SNP 167969 to 168569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,305 DEBUG Processing 161/232 atomic regions from SNP 48033 to 48633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,313 DEBUG Processing 496/644 atomic regions from SNP 148717 to 149317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,419 DEBUG Processing 702/893 atomic regions from SNP 210328 to 210928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,482 DEBUG Processing 711/853 atomic regions from SNP 213288 to 213888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,491 DEBUG Processing 557/1017 atomic regions from SNP 167018 to 167618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,542 DEBUG Processing 162/232 atomic regions from SNP 48333 to 48933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,569 DEBUG Processing 497/644 atomic regions from SNP 149017 to 149617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,587 DEBUG Processing 561/1128 atomic regions from SNP 168269 to 168869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,657 DEBUG Processing 703/893 atomic regions from SNP 210628 to 211228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,717 DEBUG Processing 712/853 atomic regions from SNP 213588 to 214188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:14,750 DEBUG Processing 558/1017 atomic regions from SNP 167318 to 167918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,778 DEBUG Processing 163/232 atomic regions from SNP 48633 to 49233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:14,821 DEBUG Processing 498/644 atomic regions from SNP 149317 to 149917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:14,866 DEBUG Processing 562/1128 atomic regions from SNP 168569 to 169169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,898 DEBUG Processing 704/893 atomic regions from SNP 210928 to 211528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:14,954 DEBUG Processing 713/853 atomic regions from SNP 213888 to 214488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,012 DEBUG Processing 164/232 atomic regions from SNP 48933 to 49533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,018 DEBUG Processing 559/1017 atomic regions from SNP 167618 to 168218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,078 DEBUG Processing 499/644 atomic regions from SNP 149617 to 150217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,139 DEBUG Processing 705/893 atomic regions from SNP 211228 to 211828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,143 DEBUG Processing 563/1128 atomic regions from SNP 168869 to 169469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,191 DEBUG Processing 714/853 atomic regions from SNP 214188 to 214788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,242 DEBUG Processing 165/232 atomic regions from SNP 49233 to 49833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,287 DEBUG Processing 560/1017 atomic regions from SNP 167918 to 168518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,325 DEBUG Processing 500/644 atomic regions from SNP 149917 to 150517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,397 DEBUG Processing 706/893 atomic regions from SNP 211528 to 212128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,428 DEBUG Processing 564/1128 atomic regions from SNP 169169 to 169769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,436 DEBUG Processing 715/853 atomic regions from SNP 214488 to 215088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,474 DEBUG Processing 166/232 atomic regions from SNP 49533 to 50133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,558 DEBUG Processing 561/1017 atomic regions from SNP 168218 to 168818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,567 DEBUG Processing 501/644 atomic regions from SNP 150217 to 150817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,673 DEBUG Processing 707/893 atomic regions from SNP 211828 to 212428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,694 DEBUG Processing 716/853 atomic regions from SNP 214788 to 215388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:15,711 DEBUG Processing 167/232 atomic regions from SNP 49833 to 50433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,716 DEBUG Processing 565/1128 atomic regions from SNP 169469 to 170069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,817 DEBUG Processing 502/644 atomic regions from SNP 150517 to 151117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:15,830 DEBUG Processing 562/1017 atomic regions from SNP 168518 to 169118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,950 DEBUG Processing 168/232 atomic regions from SNP 50133 to 50733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:15,958 DEBUG Processing 708/893 atomic regions from SNP 212128 to 212728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:15,965 DEBUG Processing 717/853 atomic regions from SNP 215088 to 215688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,001 DEBUG Processing 566/1128 atomic regions from SNP 169769 to 170369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,064 DEBUG Processing 503/644 atomic regions from SNP 150817 to 151417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,101 DEBUG Processing 563/1017 atomic regions from SNP 168818 to 169418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,191 DEBUG Processing 169/232 atomic regions from SNP 50433 to 51033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,212 DEBUG Processing 718/853 atomic regions from SNP 215388 to 215988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,240 DEBUG Processing 709/893 atomic regions from SNP 212428 to 213028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,286 DEBUG Processing 567/1128 atomic regions from SNP 170069 to 170669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,332 DEBUG Processing 504/644 atomic regions from SNP 151117 to 151717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,370 DEBUG Processing 564/1017 atomic regions from SNP 169118 to 169718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,424 DEBUG Processing 170/232 atomic regions from SNP 50733 to 51333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,454 DEBUG Processing 719/853 atomic regions from SNP 215688 to 216288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,516 DEBUG Processing 710/893 atomic regions from SNP 212728 to 213328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,571 DEBUG Processing 568/1128 atomic regions from SNP 170369 to 170969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,605 DEBUG Processing 505/644 atomic regions from SNP 151417 to 152017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,641 DEBUG Processing 565/1017 atomic regions from SNP 169418 to 170018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,654 DEBUG Processing 171/232 atomic regions from SNP 51033 to 51633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,687 DEBUG Processing 720/853 atomic regions from SNP 215988 to 216588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:16,792 DEBUG Processing 711/893 atomic regions from SNP 213028 to 213628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:16,852 DEBUG Processing 569/1128 atomic regions from SNP 170669 to 171269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,875 DEBUG Processing 506/644 atomic regions from SNP 151717 to 152317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:16,895 DEBUG Processing 172/232 atomic regions from SNP 51333 to 51933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:16,912 DEBUG Processing 566/1017 atomic regions from SNP 169718 to 170318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,950 DEBUG Processing 721/853 atomic regions from SNP 216288 to 216888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,041 DEBUG Processing 712/893 atomic regions from SNP 213328 to 213928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,126 DEBUG Processing 173/232 atomic regions from SNP 51633 to 52233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,133 DEBUG Processing 570/1128 atomic regions from SNP 170969 to 171569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,162 DEBUG Processing 507/644 atomic regions from SNP 152017 to 152617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,197 DEBUG Processing 567/1017 atomic regions from SNP 170018 to 170618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,231 DEBUG Processing 722/853 atomic regions from SNP 216588 to 217188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,285 DEBUG Processing 713/893 atomic regions from SNP 213628 to 214228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,360 DEBUG Processing 174/232 atomic regions from SNP 51933 to 52533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,411 DEBUG Processing 571/1128 atomic regions from SNP 171269 to 171869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,444 DEBUG Processing 508/644 atomic regions from SNP 152317 to 152917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,471 DEBUG Processing 568/1017 atomic regions from SNP 170318 to 170918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,510 DEBUG Processing 723/853 atomic regions from SNP 216888 to 217488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,534 DEBUG Processing 714/893 atomic regions from SNP 213928 to 214528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,591 DEBUG Processing 175/232 atomic regions from SNP 52233 to 52833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,686 DEBUG Processing 572/1128 atomic regions from SNP 171569 to 172169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,725 DEBUG Processing 509/644 atomic regions from SNP 152617 to 153217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:17,744 DEBUG Processing 569/1017 atomic regions from SNP 170618 to 171218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,774 DEBUG Processing 715/893 atomic regions from SNP 214228 to 214828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:17,779 DEBUG Processing 724/853 atomic regions from SNP 217188 to 217788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:17,818 DEBUG Processing 176/232 atomic regions from SNP 52533 to 53133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:17,957 DEBUG Processing 573/1128 atomic regions from SNP 171869 to 172469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,995 DEBUG Processing 510/644 atomic regions from SNP 152917 to 153517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,015 DEBUG Processing 716/893 atomic regions from SNP 214528 to 215128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,017 DEBUG Processing 570/1017 atomic regions from SNP 170918 to 171518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,023 DEBUG Processing 725/853 atomic regions from SNP 217488 to 218088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,043 DEBUG Processing 177/232 atomic regions from SNP 52833 to 53433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,229 DEBUG Processing 574/1128 atomic regions from SNP 172169 to 172769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,260 DEBUG Processing 717/893 atomic regions from SNP 214828 to 215428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,262 DEBUG Processing 726/853 atomic regions from SNP 217788 to 218388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,262 DEBUG Processing 511/644 atomic regions from SNP 153217 to 153817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,268 DEBUG Processing 178/232 atomic regions from SNP 53133 to 53733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,285 DEBUG Processing 571/1017 atomic regions from SNP 171218 to 171818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,505 DEBUG Processing 718/893 atomic regions from SNP 215128 to 215728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,506 DEBUG Processing 179/232 atomic regions from SNP 53433 to 54033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,506 DEBUG Processing 727/853 atomic regions from SNP 218088 to 218688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,509 DEBUG Processing 575/1128 atomic regions from SNP 172469 to 173069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,536 DEBUG Processing 512/644 atomic regions from SNP 153517 to 154117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,554 DEBUG Processing 572/1017 atomic regions from SNP 171518 to 172118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,743 DEBUG Processing 180/232 atomic regions from SNP 53733 to 54333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:18,750 DEBUG Processing 728/853 atomic regions from SNP 218388 to 218988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:18,752 DEBUG Processing 719/893 atomic regions from SNP 215428 to 216028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:18,790 DEBUG Processing 576/1128 atomic regions from SNP 172769 to 173369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,810 DEBUG Processing 513/644 atomic regions from SNP 153817 to 154417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:18,826 DEBUG Processing 573/1017 atomic regions from SNP 171818 to 172418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,989 DEBUG Processing 729/853 atomic regions from SNP 218688 to 219288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,006 DEBUG Processing 181/232 atomic regions from SNP 54033 to 54633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,018 DEBUG Processing 720/893 atomic regions from SNP 215728 to 216328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,076 DEBUG Processing 577/1128 atomic regions from SNP 173069 to 173669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,100 DEBUG Processing 514/644 atomic regions from SNP 154117 to 154717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,102 DEBUG Processing 574/1017 atomic regions from SNP 172118 to 172718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,216 DEBUG Processing 730/853 atomic regions from SNP 218988 to 219588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,254 DEBUG Processing 182/232 atomic regions from SNP 54333 to 54933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,281 DEBUG Processing 721/893 atomic regions from SNP 216028 to 216628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,352 DEBUG Processing 578/1128 atomic regions from SNP 173369 to 173969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,370 DEBUG Processing 575/1017 atomic regions from SNP 172418 to 173018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,372 DEBUG Processing 515/644 atomic regions from SNP 154417 to 155017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,446 DEBUG Processing 731/853 atomic regions from SNP 219288 to 219888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,475 DEBUG Processing 183/232 atomic regions from SNP 54633 to 55233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,543 DEBUG Processing 722/893 atomic regions from SNP 216328 to 216928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,630 DEBUG Processing 579/1128 atomic regions from SNP 173669 to 174269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,642 DEBUG Processing 576/1017 atomic regions from SNP 172718 to 173318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,652 DEBUG Processing 516/644 atomic regions from SNP 154717 to 155317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,688 DEBUG Processing 732/853 atomic regions from SNP 219588 to 220188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,709 DEBUG Processing 184/232 atomic regions from SNP 54933 to 55533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:19,807 DEBUG Processing 723/893 atomic regions from SNP 216628 to 217228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:19,908 DEBUG Processing 580/1128 atomic regions from SNP 173969 to 174569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,912 DEBUG Processing 577/1017 atomic regions from SNP 173018 to 173618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,931 DEBUG Processing 517/644 atomic regions from SNP 155017 to 155617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:19,933 DEBUG Processing 733/853 atomic regions from SNP 219888 to 220488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:19,947 DEBUG Processing 185/232 atomic regions from SNP 55233 to 55833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,056 DEBUG Processing 724/893 atomic regions from SNP 216928 to 217528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,181 DEBUG Processing 578/1017 atomic regions from SNP 173318 to 173918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,183 DEBUG Processing 734/853 atomic regions from SNP 220188 to 220788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,189 DEBUG Processing 186/232 atomic regions from SNP 55533 to 56133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,200 DEBUG Processing 581/1128 atomic regions from SNP 174269 to 174869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,202 DEBUG Processing 518/644 atomic regions from SNP 155317 to 155917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,293 DEBUG Processing 725/893 atomic regions from SNP 217228 to 217828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,433 DEBUG Processing 187/232 atomic regions from SNP 55833 to 56433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,446 DEBUG Processing 579/1017 atomic regions from SNP 173618 to 174218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,450 DEBUG Processing 735/853 atomic regions from SNP 220488 to 221088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,490 DEBUG Processing 582/1128 atomic regions from SNP 174569 to 175169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,490 DEBUG Processing 519/644 atomic regions from SNP 155617 to 156217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,555 DEBUG Processing 726/893 atomic regions from SNP 217528 to 218128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,664 DEBUG Processing 188/232 atomic regions from SNP 56133 to 56733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,688 DEBUG Processing 736/853 atomic regions from SNP 220788 to 221388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,705 DEBUG Processing 580/1017 atomic regions from SNP 173918 to 174518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,766 DEBUG Processing 520/644 atomic regions from SNP 155917 to 156517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:20,773 DEBUG Processing 583/1128 atomic regions from SNP 174869 to 175469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,802 DEBUG Processing 727/893 atomic regions from SNP 217828 to 218428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:20,899 DEBUG Processing 189/232 atomic regions from SNP 56433 to 57033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:20,922 DEBUG Processing 737/853 atomic regions from SNP 221088 to 221688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:20,966 DEBUG Processing 581/1017 atomic regions from SNP 174218 to 174818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,045 DEBUG Processing 521/644 atomic regions from SNP 156217 to 156817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,056 DEBUG Processing 584/1128 atomic regions from SNP 175169 to 175769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,078 DEBUG Processing 728/893 atomic regions from SNP 218128 to 218728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,137 DEBUG Processing 190/232 atomic regions from SNP 56733 to 57333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,160 DEBUG Processing 738/853 atomic regions from SNP 221388 to 221988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,232 DEBUG Processing 582/1017 atomic regions from SNP 174518 to 175118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,326 DEBUG Processing 522/644 atomic regions from SNP 156517 to 157117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,337 DEBUG Processing 729/893 atomic regions from SNP 218428 to 219028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,341 DEBUG Processing 585/1128 atomic regions from SNP 175469 to 176069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,395 DEBUG Processing 191/232 atomic regions from SNP 57033 to 57633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,402 DEBUG Processing 739/853 atomic regions from SNP 221688 to 222288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,502 DEBUG Processing 583/1017 atomic regions from SNP 174818 to 175418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,592 DEBUG Processing 730/893 atomic regions from SNP 218728 to 219328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,625 DEBUG Processing 523/644 atomic regions from SNP 156817 to 157417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,628 DEBUG Processing 586/1128 atomic regions from SNP 175769 to 176369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,650 DEBUG Processing 740/853 atomic regions from SNP 221988 to 222588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,657 DEBUG Processing 192/232 atomic regions from SNP 57333 to 57933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,758 DEBUG Processing 584/1017 atomic regions from SNP 175118 to 175718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,837 DEBUG Processing 731/893 atomic regions from SNP 219028 to 219628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:21,901 DEBUG Processing 741/853 atomic regions from SNP 222288 to 222888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:21,903 DEBUG Processing 193/232 atomic regions from SNP 57633 to 58233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:21,906 DEBUG Processing 524/644 atomic regions from SNP 157117 to 157717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:21,914 DEBUG Processing 587/1128 atomic regions from SNP 176069 to 176669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,020 DEBUG Processing 585/1017 atomic regions from SNP 175418 to 176018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,076 DEBUG Processing 732/893 atomic regions from SNP 219328 to 219928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,141 DEBUG Processing 194/232 atomic regions from SNP 57933 to 58533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,145 DEBUG Processing 742/853 atomic regions from SNP 222588 to 223188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,179 DEBUG Processing 525/644 atomic regions from SNP 157417 to 158017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,196 DEBUG Processing 588/1128 atomic regions from SNP 176369 to 176969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,292 DEBUG Processing 586/1017 atomic regions from SNP 175718 to 176318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,329 DEBUG Processing 733/893 atomic regions from SNP 219628 to 220228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,372 DEBUG Processing 195/232 atomic regions from SNP 58233 to 58833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,382 DEBUG Processing 743/853 atomic regions from SNP 222888 to 223488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,449 DEBUG Processing 526/644 atomic regions from SNP 157717 to 158317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,473 DEBUG Processing 589/1128 atomic regions from SNP 176669 to 177269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,576 DEBUG Processing 587/1017 atomic regions from SNP 176018 to 176618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,577 DEBUG Processing 734/893 atomic regions from SNP 219928 to 220528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,603 DEBUG Processing 196/232 atomic regions from SNP 58533 to 59133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,619 DEBUG Processing 744/853 atomic regions from SNP 223188 to 223788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,733 DEBUG Processing 527/644 atomic regions from SNP 158017 to 158617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:22,746 DEBUG Processing 590/1128 atomic regions from SNP 176969 to 177569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,827 DEBUG Processing 735/893 atomic regions from SNP 220228 to 220828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:22,837 DEBUG Processing 197/232 atomic regions from SNP 58833 to 59433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:22,862 DEBUG Processing 745/853 atomic regions from SNP 223488 to 224088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:22,865 DEBUG Processing 588/1017 atomic regions from SNP 176318 to 176918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,012 DEBUG Processing 591/1128 atomic regions from SNP 177269 to 177869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,014 DEBUG Processing 528/644 atomic regions from SNP 158317 to 158917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,076 DEBUG Processing 198/232 atomic regions from SNP 59133 to 59733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,077 DEBUG Processing 736/893 atomic regions from SNP 220528 to 221128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,106 DEBUG Processing 746/853 atomic regions from SNP 223788 to 224388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,160 DEBUG Processing 589/1017 atomic regions from SNP 176618 to 177218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,279 DEBUG Processing 592/1128 atomic regions from SNP 177569 to 178169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,288 DEBUG Processing 529/644 atomic regions from SNP 158617 to 159217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,327 DEBUG Processing 199/232 atomic regions from SNP 59433 to 60033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,328 DEBUG Processing 737/893 atomic regions from SNP 220828 to 221428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,352 DEBUG Processing 747/853 atomic regions from SNP 224088 to 224688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,455 DEBUG Processing 590/1017 atomic regions from SNP 176918 to 177518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,556 DEBUG Processing 593/1128 atomic regions from SNP 177869 to 178469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,563 DEBUG Processing 530/644 atomic regions from SNP 158917 to 159517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,578 DEBUG Processing 200/232 atomic regions from SNP 59733 to 60333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,588 DEBUG Processing 738/893 atomic regions from SNP 221128 to 221728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,630 DEBUG Processing 748/853 atomic regions from SNP 224388 to 224988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,730 DEBUG Processing 591/1017 atomic regions from SNP 177218 to 177818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,830 DEBUG Processing 201/232 atomic regions from SNP 60033 to 60633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:23,837 DEBUG Processing 531/644 atomic regions from SNP 159217 to 159817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:23,842 DEBUG Processing 594/1128 atomic regions from SNP 178169 to 178769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,847 DEBUG Processing 739/893 atomic regions from SNP 221428 to 222028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:23,910 DEBUG Processing 749/853 atomic regions from SNP 224688 to 225288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:23,983 DEBUG Processing 592/1017 atomic regions from SNP 177518 to 178118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,072 DEBUG Processing 202/232 atomic regions from SNP 60333 to 60933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,101 DEBUG Processing 740/893 atomic regions from SNP 221728 to 222328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,107 DEBUG Processing 532/644 atomic regions from SNP 159517 to 160117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,132 DEBUG Processing 595/1128 atomic regions from SNP 178469 to 179069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,175 DEBUG Processing 750/853 atomic regions from SNP 224988 to 225588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,239 DEBUG Processing 593/1017 atomic regions from SNP 177818 to 178418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,299 DEBUG Processing 203/232 atomic regions from SNP 60633 to 61233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,343 DEBUG Processing 741/893 atomic regions from SNP 222028 to 222628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,374 DEBUG Processing 533/644 atomic regions from SNP 159817 to 160417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,416 DEBUG Processing 596/1128 atomic regions from SNP 178769 to 179369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,448 DEBUG Processing 751/853 atomic regions from SNP 225288 to 225888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,496 DEBUG Processing 594/1017 atomic regions from SNP 178118 to 178718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,523 DEBUG Processing 204/232 atomic regions from SNP 60933 to 61533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,576 DEBUG Processing 742/893 atomic regions from SNP 222328 to 222928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,635 DEBUG Processing 534/644 atomic regions from SNP 160117 to 160717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,709 DEBUG Processing 597/1128 atomic regions from SNP 179069 to 179669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,710 DEBUG Processing 752/853 atomic regions from SNP 225588 to 226188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:24,760 DEBUG Processing 205/232 atomic regions from SNP 61233 to 61833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:24,762 DEBUG Processing 595/1017 atomic regions from SNP 178418 to 179018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,822 DEBUG Processing 743/893 atomic regions from SNP 222628 to 223228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:24,899 DEBUG Processing 535/644 atomic regions from SNP 160417 to 161017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:24,992 DEBUG Processing 753/853 atomic regions from SNP 225888 to 226488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,005 DEBUG Processing 206/232 atomic regions from SNP 61533 to 62133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,018 DEBUG Processing 598/1128 atomic regions from SNP 179369 to 179969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,027 DEBUG Processing 596/1017 atomic regions from SNP 178718 to 179318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,073 DEBUG Processing 744/893 atomic regions from SNP 222928 to 223528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,146 DEBUG Processing 536/644 atomic regions from SNP 160717 to 161317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,243 DEBUG Processing 207/232 atomic regions from SNP 61833 to 62433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,275 DEBUG Processing 754/853 atomic regions from SNP 226188 to 226788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,293 DEBUG Processing 597/1017 atomic regions from SNP 179018 to 179618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,324 DEBUG Processing 745/893 atomic regions from SNP 223228 to 223828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,328 DEBUG Processing 599/1128 atomic regions from SNP 179669 to 180269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,402 DEBUG Processing 537/644 atomic regions from SNP 161017 to 161617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,477 DEBUG Processing 208/232 atomic regions from SNP 62133 to 62733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,554 DEBUG Processing 598/1017 atomic regions from SNP 179318 to 179918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,555 DEBUG Processing 755/853 atomic regions from SNP 226488 to 227088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,579 DEBUG Processing 746/893 atomic regions from SNP 223528 to 224128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,630 DEBUG Processing 600/1128 atomic regions from SNP 179969 to 180569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,646 DEBUG Processing 538/644 atomic regions from SNP 161317 to 161917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,703 DEBUG Processing 209/232 atomic regions from SNP 62433 to 63033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:25,814 DEBUG Processing 599/1017 atomic regions from SNP 179618 to 180218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,822 DEBUG Processing 756/853 atomic regions from SNP 226788 to 227388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:25,831 DEBUG Processing 747/893 atomic regions from SNP 223828 to 224428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:25,887 DEBUG Processing 539/644 atomic regions from SNP 161617 to 162217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:25,924 DEBUG Processing 601/1128 atomic regions from SNP 180269 to 180869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,931 DEBUG Processing 210/232 atomic regions from SNP 62733 to 63333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,066 DEBUG Processing 600/1017 atomic regions from SNP 179918 to 180518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,068 DEBUG Processing 757/853 atomic regions from SNP 227088 to 227688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,075 DEBUG Processing 748/893 atomic regions from SNP 224128 to 224728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,144 DEBUG Processing 540/644 atomic regions from SNP 161917 to 162517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,179 DEBUG Processing 211/232 atomic regions from SNP 63033 to 63633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,216 DEBUG Processing 602/1128 atomic regions from SNP 180569 to 181169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,319 DEBUG Processing 749/893 atomic regions from SNP 224428 to 225028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,328 DEBUG Processing 601/1017 atomic regions from SNP 180218 to 180818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,332 DEBUG Processing 758/853 atomic regions from SNP 227388 to 227988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,411 DEBUG Processing 541/644 atomic regions from SNP 162217 to 162817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,435 DEBUG Processing 212/232 atomic regions from SNP 63333 to 63933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,523 DEBUG Processing 603/1128 atomic regions from SNP 180869 to 181469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,566 DEBUG Processing 750/893 atomic regions from SNP 224728 to 225328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,600 DEBUG Processing 602/1017 atomic regions from SNP 180518 to 181118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,609 DEBUG Processing 759/853 atomic regions from SNP 227688 to 228288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,676 DEBUG Processing 213/232 atomic regions from SNP 63633 to 64233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,685 DEBUG Processing 542/644 atomic regions from SNP 162517 to 163117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:26,805 DEBUG Processing 604/1128 atomic regions from SNP 181169 to 181769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,813 DEBUG Processing 751/893 atomic regions from SNP 225028 to 225628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:26,873 DEBUG Processing 603/1017 atomic regions from SNP 180818 to 181418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,887 DEBUG Processing 760/853 atomic regions from SNP 227988 to 228588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:26,913 DEBUG Processing 214/232 atomic regions from SNP 63933 to 64533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:26,954 DEBUG Processing 543/644 atomic regions from SNP 162817 to 163417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,061 DEBUG Processing 752/893 atomic regions from SNP 225328 to 225928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,086 DEBUG Processing 605/1128 atomic regions from SNP 181469 to 182069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,148 DEBUG Processing 604/1017 atomic regions from SNP 181118 to 181718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,151 DEBUG Processing 215/232 atomic regions from SNP 64233 to 64833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,162 DEBUG Processing 761/853 atomic regions from SNP 228288 to 228888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,216 DEBUG Processing 544/644 atomic regions from SNP 163117 to 163717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,306 DEBUG Processing 753/893 atomic regions from SNP 225628 to 226228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,370 DEBUG Processing 606/1128 atomic regions from SNP 181769 to 182369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,390 DEBUG Processing 216/232 atomic regions from SNP 64533 to 65133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,409 DEBUG Processing 762/853 atomic regions from SNP 228588 to 229188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,415 DEBUG Processing 605/1017 atomic regions from SNP 181418 to 182018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,480 DEBUG Processing 545/644 atomic regions from SNP 163417 to 164017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,556 DEBUG Processing 754/893 atomic regions from SNP 225928 to 226528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,626 DEBUG Processing 217/232 atomic regions from SNP 64833 to 65433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,648 DEBUG Processing 607/1128 atomic regions from SNP 182069 to 182669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,655 DEBUG Processing 763/853 atomic regions from SNP 228888 to 229488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,673 DEBUG Processing 606/1017 atomic regions from SNP 181718 to 182318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,747 DEBUG Processing 546/644 atomic regions from SNP 163717 to 164317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:27,826 DEBUG Processing 755/893 atomic regions from SNP 226228 to 226828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:27,858 DEBUG Processing 218/232 atomic regions from SNP 65133 to 65733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:27,901 DEBUG Processing 764/853 atomic regions from SNP 229188 to 229788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:27,931 DEBUG Processing 608/1128 atomic regions from SNP 182369 to 182969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,933 DEBUG Processing 607/1017 atomic regions from SNP 182018 to 182618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,003 DEBUG Processing 547/644 atomic regions from SNP 164017 to 164617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,106 DEBUG Processing 219/232 atomic regions from SNP 65433 to 66033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,110 DEBUG Processing 756/893 atomic regions from SNP 226528 to 227128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,170 DEBUG Processing 765/853 atomic regions from SNP 229488 to 230088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,215 DEBUG Processing 608/1017 atomic regions from SNP 182318 to 182918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,222 DEBUG Processing 609/1128 atomic regions from SNP 182669 to 183269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,250 DEBUG Processing 548/644 atomic regions from SNP 164317 to 164917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,344 DEBUG Processing 220/232 atomic regions from SNP 65733 to 66333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,374 DEBUG Processing 757/893 atomic regions from SNP 226828 to 227428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,438 DEBUG Processing 766/853 atomic regions from SNP 229788 to 230388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,479 DEBUG Processing 609/1017 atomic regions from SNP 182618 to 183218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,500 DEBUG Processing 610/1128 atomic regions from SNP 182969 to 183569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,501 DEBUG Processing 549/644 atomic regions from SNP 164617 to 165217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,591 DEBUG Processing 221/232 atomic regions from SNP 66033 to 66633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,658 DEBUG Processing 758/893 atomic regions from SNP 227128 to 227728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,705 DEBUG Processing 767/853 atomic regions from SNP 230088 to 230688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:28,746 DEBUG Processing 610/1017 atomic regions from SNP 182918 to 183518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,760 DEBUG Processing 550/644 atomic regions from SNP 164917 to 165517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:28,776 DEBUG Processing 611/1128 atomic regions from SNP 183269 to 183869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,839 DEBUG Processing 222/232 atomic regions from SNP 66333 to 66933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:28,914 DEBUG Processing 759/893 atomic regions from SNP 227428 to 228028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:28,975 DEBUG Processing 768/853 atomic regions from SNP 230388 to 230988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,019 DEBUG Processing 611/1017 atomic regions from SNP 183218 to 183818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,030 DEBUG Processing 551/644 atomic regions from SNP 165217 to 165817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,054 DEBUG Processing 612/1128 atomic regions from SNP 183569 to 184169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,075 DEBUG Processing 223/232 atomic regions from SNP 66633 to 67233 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,159 DEBUG Processing 760/893 atomic regions from SNP 227728 to 228328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,249 DEBUG Processing 769/853 atomic regions from SNP 230688 to 231288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,293 DEBUG Processing 612/1017 atomic regions from SNP 183518 to 184118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,305 DEBUG Processing 552/644 atomic regions from SNP 165517 to 166117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,315 DEBUG Processing 224/232 atomic regions from SNP 66933 to 67533 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,336 DEBUG Processing 613/1128 atomic regions from SNP 183869 to 184469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,403 DEBUG Processing 761/893 atomic regions from SNP 228028 to 228628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,527 DEBUG Processing 770/853 atomic regions from SNP 230988 to 231588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,555 DEBUG Processing 225/232 atomic regions from SNP 67233 to 67833 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,566 DEBUG Processing 553/644 atomic regions from SNP 165817 to 166417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,567 DEBUG Processing 613/1017 atomic regions from SNP 183818 to 184418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,620 DEBUG Processing 614/1128 atomic regions from SNP 184169 to 184769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,646 DEBUG Processing 762/893 atomic regions from SNP 228328 to 228928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,796 DEBUG Processing 771/853 atomic regions from SNP 231288 to 231888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:29,797 DEBUG Processing 226/232 atomic regions from SNP 67533 to 68133 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:29,836 DEBUG Processing 554/644 atomic regions from SNP 166117 to 166717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:29,837 DEBUG Processing 614/1017 atomic regions from SNP 184118 to 184718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,886 DEBUG Processing 763/893 atomic regions from SNP 228628 to 229228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:29,899 DEBUG Processing 615/1128 atomic regions from SNP 184469 to 185069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,033 DEBUG Processing 227/232 atomic regions from SNP 67833 to 68433 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,062 DEBUG Processing 772/853 atomic regions from SNP 231588 to 232188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,101 DEBUG Processing 555/644 atomic regions from SNP 166417 to 167017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,110 DEBUG Processing 615/1017 atomic regions from SNP 184418 to 185018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,129 DEBUG Processing 764/893 atomic regions from SNP 228928 to 229528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,171 DEBUG Processing 616/1128 atomic regions from SNP 184769 to 185369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,265 DEBUG Processing 228/232 atomic regions from SNP 68133 to 68733 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,330 DEBUG Processing 773/853 atomic regions from SNP 231888 to 232488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,371 DEBUG Processing 765/893 atomic regions from SNP 229228 to 229828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,373 DEBUG Processing 556/644 atomic regions from SNP 166717 to 167317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,391 DEBUG Processing 616/1017 atomic regions from SNP 184718 to 185318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,450 DEBUG Processing 617/1128 atomic regions from SNP 185069 to 185669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,503 DEBUG Processing 229/232 atomic regions from SNP 68433 to 69033 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,574 DEBUG Processing 774/853 atomic regions from SNP 232188 to 232788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,621 DEBUG Processing 766/893 atomic regions from SNP 229528 to 230128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,626 DEBUG Processing 557/644 atomic regions from SNP 167017 to 167617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,666 DEBUG Processing 617/1017 atomic regions from SNP 185018 to 185618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,733 DEBUG Processing 618/1128 atomic regions from SNP 185369 to 185969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,736 DEBUG Processing 230/232 atomic regions from SNP 68733 to 69333 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:30,815 DEBUG Processing 775/853 atomic regions from SNP 232488 to 233088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:30,865 DEBUG Processing 767/893 atomic regions from SNP 229828 to 230428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:30,877 DEBUG Processing 558/644 atomic regions from SNP 167317 to 167917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:30,942 DEBUG Processing 618/1017 atomic regions from SNP 185318 to 185918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,964 DEBUG Processing 231/232 atomic regions from SNP 69033 to 69633 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:31,005 DEBUG Processing 619/1128 atomic regions from SNP 185669 to 186269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,049 DEBUG Processing 776/853 atomic regions from SNP 232788 to 233388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,104 DEBUG Processing 768/893 atomic regions from SNP 230128 to 230728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,122 DEBUG Processing 559/644 atomic regions from SNP 167617 to 168217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,192 DEBUG Processing 232/232 atomic regions from SNP 69333 to 69933 for chrX (subchromosome 6 of 6). 2025-01-31 09:47:31,209 DEBUG Processing 619/1017 atomic regions from SNP 185618 to 186218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,277 DEBUG Processing 620/1128 atomic regions from SNP 185969 to 186569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,283 DEBUG Processing 777/853 atomic regions from SNP 233088 to 233688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,325 DEBUG Unique SNPs positions in subchromosome 6: 69934 2025-01-31 09:47:31,340 DEBUG Processing 769/893 atomic regions from SNP 230428 to 231028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,388 DEBUG Processing 560/644 atomic regions from SNP 167917 to 168517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,482 DEBUG Subchromosome time: 64.01272601797245, subchromosome SNPs: 69934 2025-01-31 09:47:31,482 DEBUG Estimated BADs: [1.21, 6.05, 2.42, 4.84, 0.60, 1.21, 2.42, 0.60, 0.00, 0.00, 2.42, 0.60, 2.42, 12.09, 1.21, 6.05, 2.42, 0.60, 1.21, 3.63, 1.21, 2.42, 1.21, 0.30, 0.00, 0.40, 2.42, 1.21, 2.42, 0.60, 2.42, 1.21, 12.09] SNP counts: [3409, 3725, 3824, 3300, 6013, 5612, 1578, 5306, 2, 58, 5800, 14762, 4272, 145, 35105, 2195, 4634, 23664, 2673, 2051, 7290, 12080, 12674, 14340, 1, 12676, 1090, 22740, 2962, 11551, 9217, 9660, 38] SNP IDs counts: [3409, 3725, 3824, 3300, 6013, 5612, 1578, 5306, 2, 58, 5800, 14762, 4272, 145, 35105, 2195, 4634, 23664, 2673, 2051, 7290, 12080, 12674, 14340, 1, 12676, 1090, 22740, 2962, 11551, 9217, 9660, 38] Critical gap: 757539bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.30Mbp, 9.65Mbp, 11.80Mbp, 13.58Mbp, 17.20Mbp, 20.62Mbp, 21.51Mbp, 26.91Mbp[1.12Mbp], 28.03Mbp[0.98Mbp], 30.24Mbp[0.89Mbp], 39.09Mbp, 48.02Mbp, 50.56Mbp, 50.64Mbp, 72.98Mbp, 74.32Mbp, 77.42Mbp, 92.02Mbp, 93.63Mbp, 94.83Mbp, 99.32Mbp, 106.22Mbp, 114.14Mbp, 124.25Mbp[0.87Mbp], 125.12Mbp[0.88Mbp], 134.01Mbp, 134.60Mbp, 150.43Mbp, 152.14Mbp, 159.25Mbp, 164.42Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:47:31,483 DEBUG chrX time: 64.01332198502496 s 2025-01-31 09:47:31,497 DEBUG Processing 620/1017 atomic regions from SNP 185918 to 186518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,545 DEBUG Processing 778/853 atomic regions from SNP 233388 to 233988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,558 DEBUG Processing 621/1128 atomic regions from SNP 186269 to 186869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,588 DEBUG Processing 770/893 atomic regions from SNP 230728 to 231328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,673 DEBUG chrX: Fitting background model for 30 segments 2025-01-31 09:47:31,677 DEBUG Processing 561/644 atomic regions from SNP 168217 to 168817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:31,786 DEBUG Processing 621/1017 atomic regions from SNP 186218 to 186818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,822 DEBUG Processing 779/853 atomic regions from SNP 233688 to 234288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:31,835 DEBUG Processing 622/1128 atomic regions from SNP 186569 to 187169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,836 DEBUG Processing 771/893 atomic regions from SNP 231028 to 231628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:31,953 DEBUG Processing 562/644 atomic regions from SNP 168517 to 169117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,062 DEBUG Processing 622/1017 atomic regions from SNP 186518 to 187118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,089 DEBUG Processing 772/893 atomic regions from SNP 231328 to 231928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,101 DEBUG Processing 780/853 atomic regions from SNP 233988 to 234588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,124 DEBUG Processing 623/1128 atomic regions from SNP 186869 to 187469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,227 DEBUG Processing 563/644 atomic regions from SNP 168817 to 169417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,338 DEBUG Processing 623/1017 atomic regions from SNP 186818 to 187418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,344 DEBUG Processing 773/893 atomic regions from SNP 231628 to 232228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,371 DEBUG Processing 781/853 atomic regions from SNP 234288 to 234888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,414 DEBUG Processing 624/1128 atomic regions from SNP 187169 to 187769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,495 DEBUG Processing 564/644 atomic regions from SNP 169117 to 169717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,594 DEBUG Processing 774/893 atomic regions from SNP 231928 to 232528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,617 DEBUG Processing 624/1017 atomic regions from SNP 187118 to 187718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,654 DEBUG Processing 782/853 atomic regions from SNP 234588 to 235188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,701 DEBUG Processing 625/1128 atomic regions from SNP 187469 to 188069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,752 DEBUG Processing 565/644 atomic regions from SNP 169417 to 170017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:32,845 DEBUG Processing 775/893 atomic regions from SNP 232228 to 232828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:32,894 DEBUG Processing 625/1017 atomic regions from SNP 187418 to 188018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,935 DEBUG Processing 783/853 atomic regions from SNP 234888 to 235488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:32,988 DEBUG Processing 626/1128 atomic regions from SNP 187769 to 188369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,025 DEBUG Processing 566/644 atomic regions from SNP 169717 to 170317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,096 DEBUG Processing 776/893 atomic regions from SNP 232528 to 233128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,171 DEBUG Processing 626/1017 atomic regions from SNP 187718 to 188318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,200 DEBUG Processing 784/853 atomic regions from SNP 235188 to 235788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,269 DEBUG Processing 627/1128 atomic regions from SNP 188069 to 188669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,302 DEBUG Processing 567/644 atomic regions from SNP 170017 to 170617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,341 DEBUG Processing 777/893 atomic regions from SNP 232828 to 233428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,439 DEBUG Processing 785/853 atomic regions from SNP 235488 to 236088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,452 DEBUG Processing 627/1017 atomic regions from SNP 188018 to 188618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,547 DEBUG Processing 628/1128 atomic regions from SNP 188369 to 188969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,575 DEBUG Processing 568/644 atomic regions from SNP 170317 to 170917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,582 DEBUG Processing 778/893 atomic regions from SNP 233128 to 233728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,703 DEBUG Processing 786/853 atomic regions from SNP 235788 to 236388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,722 DEBUG Processing 628/1017 atomic regions from SNP 188318 to 188918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,814 DEBUG Processing 569/644 atomic regions from SNP 170617 to 171217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:33,827 DEBUG Processing 779/893 atomic regions from SNP 233428 to 234028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:33,827 DEBUG Processing 629/1128 atomic regions from SNP 188669 to 189269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,969 DEBUG Processing 787/853 atomic regions from SNP 236088 to 236688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:33,989 DEBUG Processing 629/1017 atomic regions from SNP 188618 to 189218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,055 DEBUG Processing 570/644 atomic regions from SNP 170917 to 171517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,068 DEBUG Processing 780/893 atomic regions from SNP 233728 to 234328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,101 DEBUG Processing 630/1128 atomic regions from SNP 188969 to 189569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,230 DEBUG Processing 788/853 atomic regions from SNP 236388 to 236988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,255 DEBUG Processing 630/1017 atomic regions from SNP 188918 to 189518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,302 DEBUG Processing 571/644 atomic regions from SNP 171217 to 171817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,307 DEBUG Processing 781/893 atomic regions from SNP 234028 to 234628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,379 DEBUG Processing 631/1128 atomic regions from SNP 189269 to 189869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,480 DEBUG Processing 789/853 atomic regions from SNP 236688 to 237288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,526 DEBUG Processing 631/1017 atomic regions from SNP 189218 to 189818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,551 DEBUG Processing 572/644 atomic regions from SNP 171517 to 172117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,555 DEBUG Processing 782/893 atomic regions from SNP 234328 to 234928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,661 DEBUG Processing 632/1128 atomic regions from SNP 189569 to 190169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,717 DEBUG Processing 790/853 atomic regions from SNP 236988 to 237588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:34,793 DEBUG Processing 783/893 atomic regions from SNP 234628 to 235228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:34,797 DEBUG Processing 573/644 atomic regions from SNP 171817 to 172417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:34,798 DEBUG Processing 632/1017 atomic regions from SNP 189518 to 190118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,942 DEBUG Processing 633/1128 atomic regions from SNP 189869 to 190469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,963 DEBUG Processing 791/853 atomic regions from SNP 237288 to 237888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,030 DEBUG Processing 784/893 atomic regions from SNP 234928 to 235528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,039 DEBUG Processing 574/644 atomic regions from SNP 172117 to 172717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,073 DEBUG Processing 633/1017 atomic regions from SNP 189818 to 190418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,217 DEBUG Processing 792/853 atomic regions from SNP 237588 to 238188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,223 DEBUG Processing 634/1128 atomic regions from SNP 190169 to 190769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,278 DEBUG Processing 785/893 atomic regions from SNP 235228 to 235828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,291 DEBUG Processing 575/644 atomic regions from SNP 172417 to 173017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,355 DEBUG Processing 634/1017 atomic regions from SNP 190118 to 190718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,467 DEBUG Processing 793/853 atomic regions from SNP 237888 to 238488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,503 DEBUG Processing 635/1128 atomic regions from SNP 190469 to 191069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,524 DEBUG Processing 786/893 atomic regions from SNP 235528 to 236128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,532 DEBUG Processing 576/644 atomic regions from SNP 172717 to 173317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,621 DEBUG Processing 635/1017 atomic regions from SNP 190418 to 191018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,699 DEBUG Processing 794/853 atomic regions from SNP 238188 to 238788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:35,765 DEBUG Processing 787/893 atomic regions from SNP 235828 to 236428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:35,766 DEBUG Processing 577/644 atomic regions from SNP 173017 to 173617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:35,777 DEBUG Processing 636/1128 atomic regions from SNP 190769 to 191369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,880 DEBUG Processing 636/1017 atomic regions from SNP 190718 to 191318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,926 DEBUG Processing 795/853 atomic regions from SNP 238488 to 239088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,001 DEBUG Processing 578/644 atomic regions from SNP 173317 to 173917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,014 DEBUG Processing 788/893 atomic regions from SNP 236128 to 236728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,060 DEBUG Processing 637/1128 atomic regions from SNP 191069 to 191669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,163 DEBUG Processing 796/853 atomic regions from SNP 238788 to 239388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,164 DEBUG Processing 637/1017 atomic regions from SNP 191018 to 191618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,238 DEBUG Processing 579/644 atomic regions from SNP 173617 to 174217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,266 DEBUG Processing 789/893 atomic regions from SNP 236428 to 237028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,343 DEBUG Processing 638/1128 atomic regions from SNP 191369 to 191969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,392 DEBUG Processing 797/853 atomic regions from SNP 239088 to 239688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,447 DEBUG Processing 638/1017 atomic regions from SNP 191318 to 191918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,469 DEBUG Processing 580/644 atomic regions from SNP 173917 to 174517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,506 DEBUG Processing 790/893 atomic regions from SNP 236728 to 237328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,625 DEBUG Processing 639/1128 atomic regions from SNP 191669 to 192269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,640 DEBUG Processing 798/853 atomic regions from SNP 239388 to 239988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,703 DEBUG Processing 581/644 atomic regions from SNP 174217 to 174817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,715 DEBUG Processing 639/1017 atomic regions from SNP 191618 to 192218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,754 DEBUG Processing 791/893 atomic regions from SNP 237028 to 237628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:36,901 DEBUG Processing 640/1128 atomic regions from SNP 191969 to 192569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,912 DEBUG Processing 799/853 atomic regions from SNP 239688 to 240288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:36,941 DEBUG Processing 582/644 atomic regions from SNP 174517 to 175117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:36,982 DEBUG Processing 640/1017 atomic regions from SNP 191918 to 192518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,005 DEBUG Processing 792/893 atomic regions from SNP 237328 to 237928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,174 DEBUG Processing 641/1128 atomic regions from SNP 192269 to 192869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,176 DEBUG Processing 800/853 atomic regions from SNP 239988 to 240588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,179 DEBUG Processing 583/644 atomic regions from SNP 174817 to 175417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,251 DEBUG Processing 641/1017 atomic regions from SNP 192218 to 192818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,256 DEBUG Processing 793/893 atomic regions from SNP 237628 to 238228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,427 DEBUG Processing 584/644 atomic regions from SNP 175117 to 175717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,452 DEBUG Processing 801/853 atomic regions from SNP 240288 to 240888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,453 DEBUG Processing 642/1128 atomic regions from SNP 192569 to 193169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,510 DEBUG Processing 794/893 atomic regions from SNP 237928 to 238528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,527 DEBUG Processing 642/1017 atomic regions from SNP 192518 to 193118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,696 DEBUG Processing 585/644 atomic regions from SNP 175417 to 176017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:37,736 DEBUG Processing 802/853 atomic regions from SNP 240588 to 241188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:37,740 DEBUG Processing 643/1128 atomic regions from SNP 192869 to 193469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,766 DEBUG Processing 795/893 atomic regions from SNP 238228 to 238828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:37,798 DEBUG Processing 643/1017 atomic regions from SNP 192818 to 193418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,952 DEBUG Processing 586/644 atomic regions from SNP 175717 to 176317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,005 DEBUG Processing 803/853 atomic regions from SNP 240888 to 241488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,022 DEBUG Processing 796/893 atomic regions from SNP 238528 to 239128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,027 DEBUG Processing 644/1128 atomic regions from SNP 193169 to 193769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,074 DEBUG Processing 644/1017 atomic regions from SNP 193118 to 193718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,205 DEBUG Processing 587/644 atomic regions from SNP 176017 to 176617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,282 DEBUG Processing 804/853 atomic regions from SNP 241188 to 241788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,285 DEBUG Processing 797/893 atomic regions from SNP 238828 to 239428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,320 DEBUG Processing 645/1128 atomic regions from SNP 193469 to 194069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,355 DEBUG Processing 645/1017 atomic regions from SNP 193418 to 194018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,442 DEBUG Processing 588/644 atomic regions from SNP 176317 to 176917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,537 DEBUG Processing 798/893 atomic regions from SNP 239128 to 239728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,557 DEBUG Processing 805/853 atomic regions from SNP 241488 to 242088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,602 DEBUG Processing 646/1128 atomic regions from SNP 193769 to 194369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,613 DEBUG Processing 646/1017 atomic regions from SNP 193718 to 194318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,676 DEBUG Processing 589/644 atomic regions from SNP 176617 to 177217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:38,779 DEBUG Processing 799/893 atomic regions from SNP 239428 to 240028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:38,830 DEBUG Processing 806/853 atomic regions from SNP 241788 to 242388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:38,870 DEBUG Processing 647/1017 atomic regions from SNP 194018 to 194618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,877 DEBUG Processing 647/1128 atomic regions from SNP 194069 to 194669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,908 DEBUG Processing 590/644 atomic regions from SNP 176917 to 177517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,017 DEBUG Processing 800/893 atomic regions from SNP 239728 to 240328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,099 DEBUG Processing 807/853 atomic regions from SNP 242088 to 242688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,135 DEBUG Processing 648/1017 atomic regions from SNP 194318 to 194918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,147 DEBUG Processing 648/1128 atomic regions from SNP 194369 to 194969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,147 DEBUG Processing 591/644 atomic regions from SNP 177217 to 177817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,252 DEBUG Processing 801/893 atomic regions from SNP 240028 to 240628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,355 DEBUG Processing 808/853 atomic regions from SNP 242388 to 242988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,389 DEBUG Processing 592/644 atomic regions from SNP 177517 to 178117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,405 DEBUG Processing 649/1017 atomic regions from SNP 194618 to 195218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,419 DEBUG Processing 649/1128 atomic regions from SNP 194669 to 195269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,493 DEBUG Processing 802/893 atomic regions from SNP 240328 to 240928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,608 DEBUG Processing 809/853 atomic regions from SNP 242688 to 243288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,651 DEBUG Processing 593/644 atomic regions from SNP 177817 to 178417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,668 DEBUG Processing 650/1017 atomic regions from SNP 194918 to 195518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,690 DEBUG Processing 650/1128 atomic regions from SNP 194969 to 195569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,733 DEBUG Processing 803/893 atomic regions from SNP 240628 to 241228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:39,871 DEBUG Processing 810/853 atomic regions from SNP 242988 to 243588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:39,919 DEBUG Processing 594/644 atomic regions from SNP 178117 to 178717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:39,927 DEBUG Processing 651/1017 atomic regions from SNP 195218 to 195818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,965 DEBUG Processing 651/1128 atomic regions from SNP 195269 to 195869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,977 DEBUG Processing 804/893 atomic regions from SNP 240928 to 241528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,111 DEBUG Processing 811/853 atomic regions from SNP 243288 to 243888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,182 DEBUG Processing 595/644 atomic regions from SNP 178417 to 179017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,194 DEBUG Processing 652/1017 atomic regions from SNP 195518 to 196118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,225 DEBUG Processing 805/893 atomic regions from SNP 241228 to 241828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,246 DEBUG Processing 652/1128 atomic regions from SNP 195569 to 196169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,342 DEBUG Processing 812/853 atomic regions from SNP 243588 to 244188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,448 DEBUG Processing 596/644 atomic regions from SNP 178717 to 179317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,462 DEBUG Processing 653/1017 atomic regions from SNP 195818 to 196418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,468 DEBUG Processing 806/893 atomic regions from SNP 241528 to 242128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,518 DEBUG Processing 653/1128 atomic regions from SNP 195869 to 196469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,573 DEBUG Processing 813/853 atomic regions from SNP 243888 to 244488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,713 DEBUG Processing 807/893 atomic regions from SNP 241828 to 242428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,724 DEBUG Processing 597/644 atomic regions from SNP 179017 to 179617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:40,733 DEBUG Processing 654/1017 atomic regions from SNP 196118 to 196718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,792 DEBUG Processing 654/1128 atomic regions from SNP 196169 to 196769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,832 DEBUG Processing 814/853 atomic regions from SNP 244188 to 244788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:40,952 DEBUG Processing 808/893 atomic regions from SNP 242128 to 242728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:40,997 DEBUG Processing 655/1017 atomic regions from SNP 196418 to 197018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,001 DEBUG Processing 598/644 atomic regions from SNP 179317 to 179917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,066 DEBUG Processing 655/1128 atomic regions from SNP 196469 to 197069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,101 DEBUG Processing 815/853 atomic regions from SNP 244488 to 245088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,191 DEBUG Processing 809/893 atomic regions from SNP 242428 to 243028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,261 DEBUG Processing 656/1017 atomic regions from SNP 196718 to 197318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,271 DEBUG Processing 599/644 atomic regions from SNP 179617 to 180217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,344 DEBUG Processing 656/1128 atomic regions from SNP 196769 to 197369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,379 DEBUG Processing 816/853 atomic regions from SNP 244788 to 245388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,428 DEBUG Processing 810/893 atomic regions from SNP 242728 to 243328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,520 DEBUG Processing 657/1017 atomic regions from SNP 197018 to 197618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,527 DEBUG Processing 600/644 atomic regions from SNP 179917 to 180517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,621 DEBUG Processing 817/853 atomic regions from SNP 245088 to 245688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,621 DEBUG Processing 657/1128 atomic regions from SNP 197069 to 197669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,683 DEBUG Processing 811/893 atomic regions from SNP 243028 to 243628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:41,787 DEBUG Processing 658/1017 atomic regions from SNP 197318 to 197918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,793 DEBUG Processing 601/644 atomic regions from SNP 180217 to 180817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:41,871 DEBUG Processing 818/853 atomic regions from SNP 245388 to 245988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:41,908 DEBUG Processing 658/1128 atomic regions from SNP 197369 to 197969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,938 DEBUG Processing 812/893 atomic regions from SNP 243328 to 243928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,050 DEBUG Processing 602/644 atomic regions from SNP 180517 to 181117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,060 DEBUG Processing 659/1017 atomic regions from SNP 197618 to 198218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,119 DEBUG Processing 819/853 atomic regions from SNP 245688 to 246288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,192 DEBUG Processing 813/893 atomic regions from SNP 243628 to 244228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,197 DEBUG Processing 659/1128 atomic regions from SNP 197669 to 198269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,312 DEBUG Processing 603/644 atomic regions from SNP 180817 to 181417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,325 DEBUG Processing 660/1017 atomic regions from SNP 197918 to 198518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,350 DEBUG Processing 820/853 atomic regions from SNP 245988 to 246588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,439 DEBUG Processing 814/893 atomic regions from SNP 243928 to 244528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,481 DEBUG Processing 660/1128 atomic regions from SNP 197969 to 198569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,573 DEBUG Processing 604/644 atomic regions from SNP 181117 to 181717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,584 DEBUG Processing 661/1017 atomic regions from SNP 198218 to 198818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,608 DEBUG Processing 821/853 atomic regions from SNP 246288 to 246888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,688 DEBUG Processing 815/893 atomic regions from SNP 244228 to 244828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:42,773 DEBUG Processing 661/1128 atomic regions from SNP 198269 to 198869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,832 DEBUG Processing 605/644 atomic regions from SNP 181417 to 182017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:42,848 DEBUG Processing 662/1017 atomic regions from SNP 198518 to 199118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,851 DEBUG Processing 822/853 atomic regions from SNP 246588 to 247188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:42,938 DEBUG Processing 816/893 atomic regions from SNP 244528 to 245128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,054 DEBUG Processing 662/1128 atomic regions from SNP 198569 to 199169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,093 DEBUG Processing 606/644 atomic regions from SNP 181717 to 182317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,105 DEBUG Processing 823/853 atomic regions from SNP 246888 to 247488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,112 DEBUG Processing 663/1017 atomic regions from SNP 198818 to 199418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,188 DEBUG Processing 817/893 atomic regions from SNP 244828 to 245428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,343 DEBUG Processing 663/1128 atomic regions from SNP 198869 to 199469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,364 DEBUG Processing 607/644 atomic regions from SNP 182017 to 182617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,378 DEBUG Processing 664/1017 atomic regions from SNP 199118 to 199718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,382 DEBUG Processing 824/853 atomic regions from SNP 247188 to 247788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,446 DEBUG Processing 818/893 atomic regions from SNP 245128 to 245728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:43,715 DEBUG Processing 664/1128 atomic regions from SNP 199169 to 199769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,734 DEBUG Processing 608/644 atomic regions from SNP 182317 to 182917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:43,747 DEBUG Processing 665/1017 atomic regions from SNP 199418 to 200018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,758 DEBUG Processing 825/853 atomic regions from SNP 247488 to 248088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:43,772 DEBUG Processing 819/893 atomic regions from SNP 245428 to 246028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,061 DEBUG Processing 665/1128 atomic regions from SNP 199469 to 200069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,098 DEBUG Processing 609/644 atomic regions from SNP 182617 to 183217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,121 DEBUG Processing 820/893 atomic regions from SNP 245728 to 246328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,126 DEBUG Processing 666/1017 atomic regions from SNP 199718 to 200318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,129 DEBUG Processing 826/853 atomic regions from SNP 247788 to 248388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,411 DEBUG Processing 666/1128 atomic regions from SNP 199769 to 200369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,416 DEBUG Processing 827/853 atomic regions from SNP 248088 to 248688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,416 DEBUG Processing 821/893 atomic regions from SNP 246028 to 246628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,422 DEBUG Processing 610/644 atomic regions from SNP 182917 to 183517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,439 DEBUG Processing 667/1017 atomic regions from SNP 200018 to 200618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,670 DEBUG Processing 822/893 atomic regions from SNP 246328 to 246928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,678 DEBUG Processing 611/644 atomic regions from SNP 183217 to 183817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,681 DEBUG Processing 828/853 atomic regions from SNP 248388 to 248988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,715 DEBUG Processing 668/1017 atomic regions from SNP 200318 to 200918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,732 DEBUG Processing 667/1128 atomic regions from SNP 200069 to 200669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,917 DEBUG Processing 823/893 atomic regions from SNP 246628 to 247228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:44,934 DEBUG Processing 829/853 atomic regions from SNP 248688 to 249288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:44,943 DEBUG Processing 612/644 atomic regions from SNP 183517 to 184117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:44,978 DEBUG Processing 669/1017 atomic regions from SNP 200618 to 201218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,043 DEBUG Processing 668/1128 atomic regions from SNP 200369 to 200969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,161 DEBUG Processing 824/893 atomic regions from SNP 246928 to 247528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,179 DEBUG Processing 830/853 atomic regions from SNP 248988 to 249588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,203 DEBUG Processing 613/644 atomic regions from SNP 183817 to 184417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,237 DEBUG Processing 670/1017 atomic regions from SNP 200918 to 201518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,311 DEBUG Processing 669/1128 atomic regions from SNP 200669 to 201269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,412 DEBUG Processing 825/893 atomic regions from SNP 247228 to 247828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,443 DEBUG Processing 614/644 atomic regions from SNP 184117 to 184717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,446 DEBUG Processing 831/853 atomic regions from SNP 249288 to 249888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,496 DEBUG Processing 671/1017 atomic regions from SNP 201218 to 201818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,582 DEBUG Processing 670/1128 atomic regions from SNP 200969 to 201569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,665 DEBUG Processing 826/893 atomic regions from SNP 247528 to 248128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,679 DEBUG Processing 615/644 atomic regions from SNP 184417 to 185017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,693 DEBUG Processing 832/853 atomic regions from SNP 249588 to 250188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:45,756 DEBUG Processing 672/1017 atomic regions from SNP 201518 to 202118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,859 DEBUG Processing 671/1128 atomic regions from SNP 201269 to 201869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,913 DEBUG Processing 616/644 atomic regions from SNP 184717 to 185317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:45,919 DEBUG Processing 827/893 atomic regions from SNP 247828 to 248428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:45,941 DEBUG Processing 833/853 atomic regions from SNP 249888 to 250488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,017 DEBUG Processing 673/1017 atomic regions from SNP 201818 to 202418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,136 DEBUG Processing 672/1128 atomic regions from SNP 201569 to 202169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,151 DEBUG Processing 617/644 atomic regions from SNP 185017 to 185617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,175 DEBUG Processing 828/893 atomic regions from SNP 248128 to 248728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,210 DEBUG Processing 834/853 atomic regions from SNP 250188 to 250788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,283 DEBUG Processing 674/1017 atomic regions from SNP 202118 to 202718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,413 DEBUG Processing 618/644 atomic regions from SNP 185317 to 185917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,427 DEBUG Processing 673/1128 atomic regions from SNP 201869 to 202469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,430 DEBUG Processing 829/893 atomic regions from SNP 248428 to 249028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,477 DEBUG Processing 835/853 atomic regions from SNP 250488 to 251088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,553 DEBUG Processing 675/1017 atomic regions from SNP 202418 to 203018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,681 DEBUG Processing 830/893 atomic regions from SNP 248728 to 249328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,687 DEBUG Processing 619/644 atomic regions from SNP 185617 to 186217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,725 DEBUG Processing 836/853 atomic regions from SNP 250788 to 251388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:46,741 DEBUG Processing 674/1128 atomic regions from SNP 202169 to 202769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,840 DEBUG Processing 676/1017 atomic regions from SNP 202718 to 203318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,922 DEBUG Processing 831/893 atomic regions from SNP 249028 to 249628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:46,957 DEBUG Processing 620/644 atomic regions from SNP 185917 to 186517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:46,980 DEBUG Processing 837/853 atomic regions from SNP 251088 to 251688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,036 DEBUG Processing 675/1128 atomic regions from SNP 202469 to 203069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,135 DEBUG Processing 677/1017 atomic regions from SNP 203018 to 203618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,162 DEBUG Processing 832/893 atomic regions from SNP 249328 to 249928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,221 DEBUG Processing 621/644 atomic regions from SNP 186217 to 186817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,251 DEBUG Processing 838/853 atomic regions from SNP 251388 to 251988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,316 DEBUG Processing 676/1128 atomic regions from SNP 202769 to 203369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,396 DEBUG Processing 833/893 atomic regions from SNP 249628 to 250228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,432 DEBUG Processing 678/1017 atomic regions from SNP 203318 to 203918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,462 DEBUG Processing 622/644 atomic regions from SNP 186517 to 187117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,523 DEBUG Processing 839/853 atomic regions from SNP 251688 to 252288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,607 DEBUG Processing 677/1128 atomic regions from SNP 203069 to 203669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,632 DEBUG Processing 834/893 atomic regions from SNP 249928 to 250528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,698 DEBUG Processing 623/644 atomic regions from SNP 186817 to 187417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:47,732 DEBUG Processing 679/1017 atomic regions from SNP 203618 to 204218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,779 DEBUG Processing 840/853 atomic regions from SNP 251988 to 252588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:47,872 DEBUG Processing 835/893 atomic regions from SNP 250228 to 250828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:47,901 DEBUG Processing 678/1128 atomic regions from SNP 203369 to 203969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,929 DEBUG Processing 624/644 atomic regions from SNP 187117 to 187717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,012 DEBUG Processing 841/853 atomic regions from SNP 252288 to 252888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,025 DEBUG Processing 680/1017 atomic regions from SNP 203918 to 204518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,108 DEBUG Processing 836/893 atomic regions from SNP 250528 to 251128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,156 DEBUG Processing 625/644 atomic regions from SNP 187417 to 188017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,199 DEBUG Processing 679/1128 atomic regions from SNP 203669 to 204269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,268 DEBUG Processing 842/853 atomic regions from SNP 252588 to 253188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,318 DEBUG Processing 681/1017 atomic regions from SNP 204218 to 204818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,346 DEBUG Processing 837/893 atomic regions from SNP 250828 to 251428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,393 DEBUG Processing 626/644 atomic regions from SNP 187717 to 188317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,461 DEBUG Processing 680/1128 atomic regions from SNP 203969 to 204569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,510 DEBUG Processing 843/853 atomic regions from SNP 252888 to 253488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,585 DEBUG Processing 838/893 atomic regions from SNP 251128 to 251728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,600 DEBUG Processing 682/1017 atomic regions from SNP 204518 to 205118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,624 DEBUG Processing 627/644 atomic regions from SNP 188017 to 188617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,720 DEBUG Processing 681/1128 atomic regions from SNP 204269 to 204869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,740 DEBUG Processing 844/853 atomic regions from SNP 253188 to 253788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,824 DEBUG Processing 839/893 atomic regions from SNP 251428 to 252028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:48,866 DEBUG Processing 628/644 atomic regions from SNP 188317 to 188917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:48,887 DEBUG Processing 683/1017 atomic regions from SNP 204818 to 205418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,978 DEBUG Processing 845/853 atomic regions from SNP 253488 to 254088 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:48,985 DEBUG Processing 682/1128 atomic regions from SNP 204569 to 205169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,066 DEBUG Processing 840/893 atomic regions from SNP 251728 to 252328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,101 DEBUG Processing 629/644 atomic regions from SNP 188617 to 189217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,157 DEBUG Processing 684/1017 atomic regions from SNP 205118 to 205718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,248 DEBUG Processing 846/853 atomic regions from SNP 253788 to 254388 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,260 DEBUG Processing 683/1128 atomic regions from SNP 204869 to 205469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,304 DEBUG Processing 841/893 atomic regions from SNP 252028 to 252628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,331 DEBUG Processing 630/644 atomic regions from SNP 188917 to 189517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,443 DEBUG Processing 685/1017 atomic regions from SNP 205418 to 206018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,522 DEBUG Processing 847/853 atomic regions from SNP 254088 to 254688 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,541 DEBUG Processing 684/1128 atomic regions from SNP 205169 to 205769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,548 DEBUG Processing 842/893 atomic regions from SNP 252328 to 252928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,585 DEBUG Processing 631/644 atomic regions from SNP 189217 to 189817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:49,730 DEBUG Processing 686/1017 atomic regions from SNP 205718 to 206318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,788 DEBUG Processing 848/853 atomic regions from SNP 254388 to 254988 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:49,800 DEBUG Processing 843/893 atomic regions from SNP 252628 to 253228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:49,824 DEBUG Processing 685/1128 atomic regions from SNP 205469 to 206069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,860 DEBUG Processing 632/644 atomic regions from SNP 189517 to 190117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,002 DEBUG Processing 687/1017 atomic regions from SNP 206018 to 206618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,038 DEBUG Processing 849/853 atomic regions from SNP 254688 to 255288 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,047 DEBUG Processing 844/893 atomic regions from SNP 252928 to 253528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,106 DEBUG Processing 686/1128 atomic regions from SNP 205769 to 206369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,128 DEBUG Processing 633/644 atomic regions from SNP 189817 to 190417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,280 DEBUG Processing 850/853 atomic regions from SNP 254988 to 255588 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,284 DEBUG Processing 688/1017 atomic regions from SNP 206318 to 206918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,292 DEBUG Processing 845/893 atomic regions from SNP 253228 to 253828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,377 DEBUG Processing 687/1128 atomic regions from SNP 206069 to 206669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,379 DEBUG Processing 634/644 atomic regions from SNP 190117 to 190717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,527 DEBUG Processing 851/853 atomic regions from SNP 255288 to 255888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,536 DEBUG Processing 846/893 atomic regions from SNP 253528 to 254128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,566 DEBUG Processing 689/1017 atomic regions from SNP 206618 to 207218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,632 DEBUG Processing 635/644 atomic regions from SNP 190417 to 191017 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,651 DEBUG Processing 688/1128 atomic regions from SNP 206369 to 206969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,777 DEBUG Processing 847/893 atomic regions from SNP 253828 to 254428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:50,777 DEBUG Processing 852/853 atomic regions from SNP 255588 to 256188 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:50,838 DEBUG Processing 690/1017 atomic regions from SNP 206918 to 207518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,880 DEBUG Processing 636/644 atomic regions from SNP 190717 to 191317 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:50,922 DEBUG Processing 689/1128 atomic regions from SNP 206669 to 207269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,014 DEBUG Processing 848/893 atomic regions from SNP 254128 to 254728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,019 DEBUG Processing 853/853 atomic regions from SNP 255888 to 256488 for chr5 (subchromosome 1 of 1). 2025-01-31 09:47:51,114 DEBUG Processing 691/1017 atomic regions from SNP 207218 to 207818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,147 DEBUG Processing 637/644 atomic regions from SNP 191017 to 191617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,151 DEBUG Unique SNPs positions in subchromosome 1: 256489 2025-01-31 09:47:51,192 DEBUG Processing 690/1128 atomic regions from SNP 206969 to 207569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,254 DEBUG Processing 849/893 atomic regions from SNP 254428 to 255028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,392 DEBUG Processing 692/1017 atomic regions from SNP 207518 to 208118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,424 DEBUG Processing 638/644 atomic regions from SNP 191317 to 191917 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,471 DEBUG Processing 691/1128 atomic regions from SNP 207269 to 207869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,501 DEBUG Processing 850/893 atomic regions from SNP 254728 to 255328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,674 DEBUG Processing 693/1017 atomic regions from SNP 207818 to 208418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,690 DEBUG Processing 639/644 atomic regions from SNP 191617 to 192217 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,753 DEBUG Processing 851/893 atomic regions from SNP 255028 to 255628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:51,753 DEBUG Processing 692/1128 atomic regions from SNP 207569 to 208169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,945 DEBUG Processing 640/644 atomic regions from SNP 191917 to 192517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:51,970 DEBUG Processing 694/1017 atomic regions from SNP 208118 to 208718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,006 DEBUG Processing 852/893 atomic regions from SNP 255328 to 255928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,029 DEBUG Processing 693/1128 atomic regions from SNP 207869 to 208469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,210 DEBUG Processing 641/644 atomic regions from SNP 192217 to 192817 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,235 DEBUG Processing 695/1017 atomic regions from SNP 208418 to 209018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,250 DEBUG Processing 853/893 atomic regions from SNP 255628 to 256228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,304 DEBUG Processing 694/1128 atomic regions from SNP 208169 to 208769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,484 DEBUG Processing 642/644 atomic regions from SNP 192517 to 193117 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,488 DEBUG Processing 854/893 atomic regions from SNP 255928 to 256528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,503 DEBUG Processing 696/1017 atomic regions from SNP 208718 to 209318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,577 DEBUG Processing 695/1128 atomic regions from SNP 208469 to 209069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,727 DEBUG Processing 855/893 atomic regions from SNP 256228 to 256828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:52,763 DEBUG Processing 643/644 atomic regions from SNP 192817 to 193417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:52,770 DEBUG Processing 697/1017 atomic regions from SNP 209018 to 209618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,858 DEBUG Processing 696/1128 atomic regions from SNP 208769 to 209369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,967 DEBUG Processing 856/893 atomic regions from SNP 256528 to 257128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,032 DEBUG Processing 644/644 atomic regions from SNP 193117 to 193717 for chr4 (subchromosome 2 of 2). 2025-01-31 09:47:53,050 DEBUG Processing 698/1017 atomic regions from SNP 209318 to 209918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,132 DEBUG Processing 697/1128 atomic regions from SNP 209069 to 209669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,177 DEBUG Unique SNPs positions in subchromosome 2: 193718 2025-01-31 09:47:53,209 DEBUG Processing 857/893 atomic regions from SNP 256828 to 257428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,341 DEBUG Processing 699/1017 atomic regions from SNP 209618 to 210218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,401 DEBUG Processing 698/1128 atomic regions from SNP 209369 to 209969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,453 DEBUG Processing 858/893 atomic regions from SNP 257128 to 257728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,619 DEBUG Processing 700/1017 atomic regions from SNP 209918 to 210518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,683 DEBUG Processing 699/1128 atomic regions from SNP 209669 to 210269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,705 DEBUG Processing 859/893 atomic regions from SNP 257428 to 258028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,887 DEBUG Processing 701/1017 atomic regions from SNP 210218 to 210818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,957 DEBUG Processing 860/893 atomic regions from SNP 257728 to 258328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:53,965 DEBUG Processing 700/1128 atomic regions from SNP 209969 to 210569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,147 DEBUG Processing 702/1017 atomic regions from SNP 210518 to 211118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,209 DEBUG Processing 861/893 atomic regions from SNP 258028 to 258628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,255 DEBUG Processing 701/1128 atomic regions from SNP 210269 to 210869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,411 DEBUG Processing 703/1017 atomic regions from SNP 210818 to 211418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,490 DEBUG Processing 862/893 atomic regions from SNP 258328 to 258928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,562 DEBUG Processing 702/1128 atomic regions from SNP 210569 to 211169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,687 DEBUG Processing 704/1017 atomic regions from SNP 211118 to 211718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,756 DEBUG Processing 863/893 atomic regions from SNP 258628 to 259228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:54,870 DEBUG Processing 703/1128 atomic regions from SNP 210869 to 211469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,039 DEBUG Processing 864/893 atomic regions from SNP 258928 to 259528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,040 DEBUG Processing 705/1017 atomic regions from SNP 211418 to 212018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,132 DEBUG Processing 704/1128 atomic regions from SNP 211169 to 211769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,286 DEBUG Processing 865/893 atomic regions from SNP 259228 to 259828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,307 DEBUG Processing 706/1017 atomic regions from SNP 211718 to 212318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,402 DEBUG Processing 705/1128 atomic regions from SNP 211469 to 212069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,526 DEBUG Processing 866/893 atomic regions from SNP 259528 to 260128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,561 DEBUG Processing 707/1017 atomic regions from SNP 212018 to 212618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,675 DEBUG Processing 706/1128 atomic regions from SNP 211769 to 212369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,764 DEBUG Processing 867/893 atomic regions from SNP 259828 to 260428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:55,820 DEBUG Processing 708/1017 atomic regions from SNP 212318 to 212918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,952 DEBUG Processing 707/1128 atomic regions from SNP 212069 to 212669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,005 DEBUG Processing 868/893 atomic regions from SNP 260128 to 260728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,081 DEBUG Processing 709/1017 atomic regions from SNP 212618 to 213218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,231 DEBUG Processing 708/1128 atomic regions from SNP 212369 to 212969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,250 DEBUG Processing 869/893 atomic regions from SNP 260428 to 261028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,339 DEBUG Processing 710/1017 atomic regions from SNP 212918 to 213518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,492 DEBUG Processing 870/893 atomic regions from SNP 260728 to 261328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,528 DEBUG Processing 709/1128 atomic regions from SNP 212669 to 213269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,595 DEBUG Processing 711/1017 atomic regions from SNP 213218 to 213818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,733 DEBUG Processing 871/893 atomic regions from SNP 261028 to 261628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:56,815 DEBUG Processing 710/1128 atomic regions from SNP 212969 to 213569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,850 DEBUG Processing 712/1017 atomic regions from SNP 213518 to 214118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,976 DEBUG Processing 872/893 atomic regions from SNP 261328 to 261928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,085 DEBUG Processing 711/1128 atomic regions from SNP 213269 to 213869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,113 DEBUG Processing 713/1017 atomic regions from SNP 213818 to 214418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,221 DEBUG Processing 873/893 atomic regions from SNP 261628 to 262228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,351 DEBUG Processing 712/1128 atomic regions from SNP 213569 to 214169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,372 DEBUG Processing 714/1017 atomic regions from SNP 214118 to 214718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,458 DEBUG Processing 874/893 atomic regions from SNP 261928 to 262528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,620 DEBUG Processing 713/1128 atomic regions from SNP 213869 to 214469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,628 DEBUG Processing 715/1017 atomic regions from SNP 214418 to 215018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,692 DEBUG Processing 875/893 atomic regions from SNP 262228 to 262828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:57,892 DEBUG Processing 716/1017 atomic regions from SNP 214718 to 215318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,895 DEBUG Processing 714/1128 atomic regions from SNP 214169 to 214769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,931 DEBUG Processing 876/893 atomic regions from SNP 262528 to 263128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,149 DEBUG Processing 717/1017 atomic regions from SNP 215018 to 215618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,166 DEBUG Processing 715/1128 atomic regions from SNP 214469 to 215069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,171 DEBUG Processing 877/893 atomic regions from SNP 262828 to 263428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,406 DEBUG Processing 878/893 atomic regions from SNP 263128 to 263728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,421 DEBUG Processing 718/1017 atomic regions from SNP 215318 to 215918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,434 DEBUG Processing 716/1128 atomic regions from SNP 214769 to 215369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,633 DEBUG Processing 879/893 atomic regions from SNP 263428 to 264028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,694 DEBUG Processing 719/1017 atomic regions from SNP 215618 to 216218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,699 DEBUG Processing 717/1128 atomic regions from SNP 215069 to 215669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,862 DEBUG Processing 880/893 atomic regions from SNP 263728 to 264328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:58,956 DEBUG Processing 720/1017 atomic regions from SNP 215918 to 216518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,972 DEBUG Processing 718/1128 atomic regions from SNP 215369 to 215969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,089 DEBUG Processing 881/893 atomic regions from SNP 264028 to 264628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,217 DEBUG Processing 721/1017 atomic regions from SNP 216218 to 216818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,243 DEBUG Processing 719/1128 atomic regions from SNP 215669 to 216269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,322 DEBUG Processing 882/893 atomic regions from SNP 264328 to 264928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,475 DEBUG Processing 722/1017 atomic regions from SNP 216518 to 217118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,506 DEBUG Processing 720/1128 atomic regions from SNP 215969 to 216569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,561 DEBUG Processing 883/893 atomic regions from SNP 264628 to 265228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,733 DEBUG Processing 723/1017 atomic regions from SNP 216818 to 217418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,773 DEBUG Processing 721/1128 atomic regions from SNP 216269 to 216869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,796 DEBUG Processing 884/893 atomic regions from SNP 264928 to 265528 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:59,991 DEBUG Processing 724/1017 atomic regions from SNP 217118 to 217718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,031 DEBUG Processing 885/893 atomic regions from SNP 265228 to 265828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,038 DEBUG Processing 722/1128 atomic regions from SNP 216569 to 217169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,252 DEBUG Processing 725/1017 atomic regions from SNP 217418 to 218018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,269 DEBUG Processing 886/893 atomic regions from SNP 265528 to 266128 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,320 DEBUG Processing 723/1128 atomic regions from SNP 216869 to 217469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,508 DEBUG Processing 887/893 atomic regions from SNP 265828 to 266428 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,516 DEBUG Processing 726/1017 atomic regions from SNP 217718 to 218318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,612 DEBUG Processing 724/1128 atomic regions from SNP 217169 to 217769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,747 DEBUG Processing 888/893 atomic regions from SNP 266128 to 266728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:00,789 DEBUG Processing 727/1017 atomic regions from SNP 218018 to 218618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,891 DEBUG Processing 725/1128 atomic regions from SNP 217469 to 218069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,984 DEBUG Processing 889/893 atomic regions from SNP 266428 to 267028 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,075 DEBUG Processing 728/1017 atomic regions from SNP 218318 to 218918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,183 DEBUG Processing 726/1128 atomic regions from SNP 217769 to 218369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,221 DEBUG Processing 890/893 atomic regions from SNP 266728 to 267328 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,361 DEBUG Processing 729/1017 atomic regions from SNP 218618 to 219218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,463 DEBUG Processing 891/893 atomic regions from SNP 267028 to 267628 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,472 DEBUG Processing 727/1128 atomic regions from SNP 218069 to 218669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,650 DEBUG Processing 730/1017 atomic regions from SNP 218918 to 219518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,704 DEBUG Processing 892/893 atomic regions from SNP 267328 to 267928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:01,756 DEBUG Processing 728/1128 atomic regions from SNP 218369 to 218969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,934 DEBUG Processing 731/1017 atomic regions from SNP 219218 to 219818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,951 DEBUG Processing 893/893 atomic regions from SNP 267628 to 268228 for chr3 (subchromosome 1 of 1). 2025-01-31 09:48:02,032 DEBUG Processing 729/1128 atomic regions from SNP 218669 to 219269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,078 DEBUG Unique SNPs positions in subchromosome 1: 268229 2025-01-31 09:48:02,199 DEBUG Processing 732/1017 atomic regions from SNP 219518 to 220118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,302 DEBUG Processing 730/1128 atomic regions from SNP 218969 to 219569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,455 DEBUG Processing 733/1017 atomic regions from SNP 219818 to 220418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,564 DEBUG Processing 731/1128 atomic regions from SNP 219269 to 219869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,731 DEBUG Processing 734/1017 atomic regions from SNP 220118 to 220718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,836 DEBUG Processing 732/1128 atomic regions from SNP 219569 to 220169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,992 DEBUG Processing 735/1017 atomic regions from SNP 220418 to 221018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,110 DEBUG Processing 733/1128 atomic regions from SNP 219869 to 220469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,265 DEBUG Processing 736/1017 atomic regions from SNP 220718 to 221318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,392 DEBUG Processing 734/1128 atomic regions from SNP 220169 to 220769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,519 DEBUG Processing 737/1017 atomic regions from SNP 221018 to 221618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,664 DEBUG Processing 735/1128 atomic regions from SNP 220469 to 221069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,780 DEBUG Processing 738/1017 atomic regions from SNP 221318 to 221918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,933 DEBUG Processing 736/1128 atomic regions from SNP 220769 to 221369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,055 DEBUG Processing 739/1017 atomic regions from SNP 221618 to 222218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,206 DEBUG Processing 737/1128 atomic regions from SNP 221069 to 221669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,326 DEBUG Processing 740/1017 atomic regions from SNP 221918 to 222518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,481 DEBUG Processing 738/1128 atomic regions from SNP 221369 to 221969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,600 DEBUG Processing 741/1017 atomic regions from SNP 222218 to 222818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,754 DEBUG Processing 739/1128 atomic regions from SNP 221669 to 222269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,855 DEBUG Processing 742/1017 atomic regions from SNP 222518 to 223118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,020 DEBUG Processing 740/1128 atomic regions from SNP 221969 to 222569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,104 DEBUG Processing 743/1017 atomic regions from SNP 222818 to 223418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,308 DEBUG Processing 741/1128 atomic regions from SNP 222269 to 222869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,353 DEBUG Processing 744/1017 atomic regions from SNP 223118 to 223718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,599 DEBUG Processing 742/1128 atomic regions from SNP 222569 to 223169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,609 DEBUG Processing 745/1017 atomic regions from SNP 223418 to 224018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,863 DEBUG Processing 746/1017 atomic regions from SNP 223718 to 224318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,893 DEBUG Processing 743/1128 atomic regions from SNP 222869 to 223469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,146 DEBUG Processing 747/1017 atomic regions from SNP 224018 to 224618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,200 DEBUG Processing 744/1128 atomic regions from SNP 223169 to 223769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,427 DEBUG Processing 748/1017 atomic regions from SNP 224318 to 224918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,492 DEBUG Processing 745/1128 atomic regions from SNP 223469 to 224069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,703 DEBUG Processing 749/1017 atomic regions from SNP 224618 to 225218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,787 DEBUG Processing 746/1128 atomic regions from SNP 223769 to 224369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,989 DEBUG Processing 750/1017 atomic regions from SNP 224918 to 225518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,091 DEBUG Processing 747/1128 atomic regions from SNP 224069 to 224669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,266 DEBUG Processing 751/1017 atomic regions from SNP 225218 to 225818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,383 DEBUG Processing 748/1128 atomic regions from SNP 224369 to 224969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,549 DEBUG Processing 752/1017 atomic regions from SNP 225518 to 226118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,683 DEBUG Processing 749/1128 atomic regions from SNP 224669 to 225269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,833 DEBUG Processing 753/1017 atomic regions from SNP 225818 to 226418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,984 DEBUG Processing 750/1128 atomic regions from SNP 224969 to 225569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,106 DEBUG Processing 754/1017 atomic regions from SNP 226118 to 226718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,292 DEBUG Processing 751/1128 atomic regions from SNP 225269 to 225869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,379 DEBUG Processing 755/1017 atomic regions from SNP 226418 to 227018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,598 DEBUG Processing 752/1128 atomic regions from SNP 225569 to 226169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,642 DEBUG Processing 756/1017 atomic regions from SNP 226718 to 227318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,891 DEBUG Processing 753/1128 atomic regions from SNP 225869 to 226469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,905 DEBUG Processing 757/1017 atomic regions from SNP 227018 to 227618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,173 DEBUG Processing 754/1128 atomic regions from SNP 226169 to 226769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,176 DEBUG Processing 758/1017 atomic regions from SNP 227318 to 227918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,453 DEBUG Processing 759/1017 atomic regions from SNP 227618 to 228218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,468 DEBUG Processing 755/1128 atomic regions from SNP 226469 to 227069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,738 DEBUG Processing 760/1017 atomic regions from SNP 227918 to 228518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,780 DEBUG Processing 756/1128 atomic regions from SNP 226769 to 227369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,002 DEBUG Processing 761/1017 atomic regions from SNP 228218 to 228818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,086 DEBUG Processing 757/1128 atomic regions from SNP 227069 to 227669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,277 DEBUG Processing 762/1017 atomic regions from SNP 228518 to 229118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,379 DEBUG Processing 758/1128 atomic regions from SNP 227369 to 227969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,549 DEBUG Processing 763/1017 atomic regions from SNP 228818 to 229418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,664 DEBUG Processing 759/1128 atomic regions from SNP 227669 to 228269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,806 DEBUG Processing 764/1017 atomic regions from SNP 229118 to 229718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,969 DEBUG Processing 760/1128 atomic regions from SNP 227969 to 228569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,062 DEBUG Processing 765/1017 atomic regions from SNP 229418 to 230018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,280 DEBUG Processing 761/1128 atomic regions from SNP 228269 to 228869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,321 DEBUG Processing 766/1017 atomic regions from SNP 229718 to 230318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,584 DEBUG Processing 762/1128 atomic regions from SNP 228569 to 229169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,584 DEBUG Processing 767/1017 atomic regions from SNP 230018 to 230618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,855 DEBUG Processing 768/1017 atomic regions from SNP 230318 to 230918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,896 DEBUG Processing 763/1128 atomic regions from SNP 228869 to 229469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,125 DEBUG Processing 769/1017 atomic regions from SNP 230618 to 231218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,221 DEBUG Processing 764/1128 atomic regions from SNP 229169 to 229769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,390 DEBUG Processing 770/1017 atomic regions from SNP 230918 to 231518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,535 DEBUG Processing 765/1128 atomic regions from SNP 229469 to 230069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,652 DEBUG Processing 771/1017 atomic regions from SNP 231218 to 231818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,844 DEBUG Processing 766/1128 atomic regions from SNP 229769 to 230369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,917 DEBUG Processing 772/1017 atomic regions from SNP 231518 to 232118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,145 DEBUG Processing 767/1128 atomic regions from SNP 230069 to 230669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,177 DEBUG Processing 773/1017 atomic regions from SNP 231818 to 232418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,433 DEBUG Processing 774/1017 atomic regions from SNP 232118 to 232718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,435 DEBUG Processing 768/1128 atomic regions from SNP 230369 to 230969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,689 DEBUG Processing 775/1017 atomic regions from SNP 232418 to 233018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,740 DEBUG Processing 769/1128 atomic regions from SNP 230669 to 231269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,950 DEBUG Processing 776/1017 atomic regions from SNP 232718 to 233318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,042 DEBUG Processing 770/1128 atomic regions from SNP 230969 to 231569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,220 DEBUG Processing 777/1017 atomic regions from SNP 233018 to 233618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,323 DEBUG Processing 771/1128 atomic regions from SNP 231269 to 231869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,487 DEBUG Processing 778/1017 atomic regions from SNP 233318 to 233918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,606 DEBUG Processing 772/1128 atomic regions from SNP 231569 to 232169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,744 DEBUG Processing 779/1017 atomic regions from SNP 233618 to 234218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:14,917 DEBUG Processing 773/1128 atomic regions from SNP 231869 to 232469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,008 DEBUG Processing 780/1017 atomic regions from SNP 233918 to 234518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,018 DEBUG Subchromosome time: 203.81398845207877, subchromosome SNPs: 193718 2025-01-31 09:48:15,018 DEBUG Estimated BADs: [1.86, 0.47, 1.86, 0.62, 1.86, 0.93, 0.27, 3.73, 5.59, 1.86, 0.62, 1.86, 3.73, 1.86, 0.31, 0.93, 0.37, 0.93, 0.27, 1.86, 0.62, 1.86, 0.27, 0.93, 0.31, 1.86, 0.93, 3.73, 0.62, 0.19, 1.86, 16.78, 0.93, 5.59, 3.73, 7.46, 3.73, 7.46, 1.86, 5.59] SNP counts: [6115, 2651, 12090, 28915, 3604, 4427, 4380, 3039, 7971, 3047, 7137, 10713, 2162, 3985, 9021, 2101, 4804, 4904, 8362, 4555, 4154, 5142, 5036, 5488, 2010, 11698, 5130, 6012, 3810, 2759, 1910, 130, 1039, 6243, 21892, 8403, 8515, 2018, 7499, 16068] SNP IDs counts: [6115, 2651, 12090, 28915, 3604, 4427, 4380, 3039, 7971, 3047, 7137, 10713, 2162, 3985, 9021, 2101, 4804, 4904, 8362, 4555, 4154, 5142, 5036, 5488, 2010, 11698, 5130, 6012, 3810, 2759, 1910, 130, 1039, 6243, 21892, 8403, 8515, 2018, 7499, 16068] Critical gap: 688235bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 6.88Mbp, 8.52Mbp, 15.44Mbp, 32.77Mbp, 34.77Mbp, 37.39Mbp, 40.13Mbp, 41.86Mbp[0.87Mbp], 47.05Mbp, 48.69Mbp, 52.96Mbp, 58.89Mbp, 60.19Mbp, 64.00Mbp, 69.37Mbp, 70.60Mbp, 73.59Mbp, 76.64Mbp, 81.67Mbp, 84.27Mbp, 86.57Mbp, 89.56Mbp, 92.72Mbp, 95.88Mbp, 97.12Mbp, 103.62Mbp, 106.44Mbp, 109.68Mbp, 111.90Mbp, 113.95Mbp, 115.04Mbp, 115.11Mbp, 115.82Mbp, 119.18Mbp, 131.78Mbp, 136.21Mbp, 140.66Mbp, 141.72Mbp, 147.85Mbp, 156.51Mbp] 2025-01-31 09:48:15,018 DEBUG chr4 time: 203.81461520807352 s 2025-01-31 09:48:15,163 DEBUG chr4: Fitting background model for 40 segments 2025-01-31 09:48:15,230 DEBUG Processing 774/1128 atomic regions from SNP 232169 to 232769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,268 DEBUG Processing 781/1017 atomic regions from SNP 234218 to 234818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,534 DEBUG Processing 775/1128 atomic regions from SNP 232469 to 233069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,540 DEBUG Processing 782/1017 atomic regions from SNP 234518 to 235118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,802 DEBUG Processing 783/1017 atomic regions from SNP 234818 to 235418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:15,833 DEBUG Processing 776/1128 atomic regions from SNP 232769 to 233369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,057 DEBUG Processing 784/1017 atomic regions from SNP 235118 to 235718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,136 DEBUG Processing 777/1128 atomic regions from SNP 233069 to 233669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,314 DEBUG Processing 785/1017 atomic regions from SNP 235418 to 236018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,429 DEBUG Processing 778/1128 atomic regions from SNP 233369 to 233969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,570 DEBUG Processing 786/1017 atomic regions from SNP 235718 to 236318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:16,730 DEBUG Processing 779/1128 atomic regions from SNP 233669 to 234269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,830 DEBUG Processing 787/1017 atomic regions from SNP 236018 to 236618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,007 DEBUG Processing 780/1128 atomic regions from SNP 233969 to 234569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,095 DEBUG Processing 788/1017 atomic regions from SNP 236318 to 236918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,284 DEBUG Processing 781/1128 atomic regions from SNP 234269 to 234869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,366 DEBUG Processing 789/1017 atomic regions from SNP 236618 to 237218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,564 DEBUG Processing 782/1128 atomic regions from SNP 234569 to 235169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,635 DEBUG Processing 790/1017 atomic regions from SNP 236918 to 237518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:17,841 DEBUG Processing 783/1128 atomic regions from SNP 234869 to 235469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,901 DEBUG Processing 791/1017 atomic regions from SNP 237218 to 237818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,131 DEBUG Processing 784/1128 atomic regions from SNP 235169 to 235769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,158 DEBUG Processing 792/1017 atomic regions from SNP 237518 to 238118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,409 DEBUG Processing 785/1128 atomic regions from SNP 235469 to 236069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,426 DEBUG Processing 793/1017 atomic regions from SNP 237818 to 238418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,685 DEBUG Processing 786/1128 atomic regions from SNP 235769 to 236369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,699 DEBUG Processing 794/1017 atomic regions from SNP 238118 to 238718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:18,959 DEBUG Processing 787/1128 atomic regions from SNP 236069 to 236669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,968 DEBUG Processing 795/1017 atomic regions from SNP 238418 to 239018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,241 DEBUG Processing 796/1017 atomic regions from SNP 238718 to 239318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,242 DEBUG Processing 788/1128 atomic regions from SNP 236369 to 236969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,516 DEBUG Processing 797/1017 atomic regions from SNP 239018 to 239618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,519 DEBUG Processing 789/1128 atomic regions from SNP 236669 to 237269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,782 DEBUG Processing 798/1017 atomic regions from SNP 239318 to 239918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:19,796 DEBUG Processing 790/1128 atomic regions from SNP 236969 to 237569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,054 DEBUG Processing 799/1017 atomic regions from SNP 239618 to 240218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,092 DEBUG Processing 791/1128 atomic regions from SNP 237269 to 237869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,324 DEBUG Processing 800/1017 atomic regions from SNP 239918 to 240518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,369 DEBUG Processing 792/1128 atomic regions from SNP 237569 to 238169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,595 DEBUG Processing 801/1017 atomic regions from SNP 240218 to 240818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,648 DEBUG Processing 793/1128 atomic regions from SNP 237869 to 238469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,861 DEBUG Processing 802/1017 atomic regions from SNP 240518 to 241118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:20,919 DEBUG Processing 794/1128 atomic regions from SNP 238169 to 238769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,121 DEBUG Processing 803/1017 atomic regions from SNP 240818 to 241418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,191 DEBUG Processing 795/1128 atomic regions from SNP 238469 to 239069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,377 DEBUG Processing 804/1017 atomic regions from SNP 241118 to 241718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,468 DEBUG Processing 796/1128 atomic regions from SNP 238769 to 239369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,637 DEBUG Processing 805/1017 atomic regions from SNP 241418 to 242018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:21,742 DEBUG Processing 797/1128 atomic regions from SNP 239069 to 239669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,905 DEBUG Processing 806/1017 atomic regions from SNP 241718 to 242318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,008 DEBUG Processing 798/1128 atomic regions from SNP 239369 to 239969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,163 DEBUG Processing 807/1017 atomic regions from SNP 242018 to 242618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,279 DEBUG Processing 799/1128 atomic regions from SNP 239669 to 240269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,421 DEBUG Processing 808/1017 atomic regions from SNP 242318 to 242918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,552 DEBUG Processing 800/1128 atomic regions from SNP 239969 to 240569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,680 DEBUG Processing 809/1017 atomic regions from SNP 242618 to 243218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:22,824 DEBUG Processing 801/1128 atomic regions from SNP 240269 to 240869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,938 DEBUG Processing 810/1017 atomic regions from SNP 242918 to 243518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,087 DEBUG Processing 802/1128 atomic regions from SNP 240569 to 241169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,194 DEBUG Processing 811/1017 atomic regions from SNP 243218 to 243818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,349 DEBUG Processing 803/1128 atomic regions from SNP 240869 to 241469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,450 DEBUG Processing 812/1017 atomic regions from SNP 243518 to 244118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,629 DEBUG Processing 804/1128 atomic regions from SNP 241169 to 241769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,709 DEBUG Processing 813/1017 atomic regions from SNP 243818 to 244418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:23,899 DEBUG Processing 805/1128 atomic regions from SNP 241469 to 242069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,970 DEBUG Processing 814/1017 atomic regions from SNP 244118 to 244718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,171 DEBUG Processing 806/1128 atomic regions from SNP 241769 to 242369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,229 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:48:24,235 DEBUG Processing 815/1017 atomic regions from SNP 244418 to 245018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,440 DEBUG Processing 807/1128 atomic regions from SNP 242069 to 242669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,500 DEBUG Processing 816/1017 atomic regions from SNP 244718 to 245318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,660 DEBUG Subchromosome time: 275.66358386096545, subchromosome SNPs: 256489 2025-01-31 09:48:24,660 DEBUG Estimated BADs: [1.73, 0.43, 1.73, 5.20, 0.87, 1.73, 6.94, 3.47, 0.43, 1.73, 0.43, 1.73, 0.29, 1.73, 0.29, 1.73, 0.29, 0.58, 1.73, 0.58, 1.73, 0.87, 6.94, 0.87, 3.47, 0.87, 5.20, 1.73, 6.94, 3.47, 1.73, 6.94, 0.87, 3.47, 1.73, 0.87, 5.20, 1.73, 3.47] SNP counts: [4726, 22629, 4461, 3953, 4170, 3852, 1883, 14316, 7050, 4738, 8985, 6015, 15000, 9037, 5360, 11073, 8132, 9761, 12128, 4362, 4049, 2109, 1299, 2004, 6300, 2284, 1650, 4972, 3386, 5514, 3192, 10112, 6457, 2030, 3300, 4168, 20391, 2198, 9443] SNP IDs counts: [4726, 22629, 4461, 3953, 4170, 3852, 1883, 14316, 7050, 4738, 8985, 6015, 15000, 9037, 5360, 11073, 8132, 9761, 12128, 4362, 4049, 2109, 1299, 2004, 6300, 2284, 1650, 4972, 3386, 5514, 3192, 10112, 6457, 2030, 3300, 4168, 20391, 2198, 9443] Critical gap: 674682bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.79Mbp, 20.87Mbp, 23.40Mbp, 25.54Mbp, 28.03Mbp, 30.19Mbp, 31.24Mbp, 38.97Mbp, 43.20Mbp, 45.86Mbp, 51.09Mbp, 54.33Mbp, 63.50Mbp, 68.42Mbp, 71.73Mbp, 77.78Mbp, 82.71Mbp, 88.54Mbp, 97.56Mbp, 99.98Mbp, 102.19Mbp, 103.39Mbp, 104.09Mbp, 105.40Mbp, 108.76Mbp, 110.23Mbp, 111.10Mbp, 113.72Mbp, 115.50Mbp, 118.41Mbp, 120.09Mbp, 125.48Mbp, 129.00Mbp, 130.13Mbp, 131.88Mbp, 134.17Mbp, 145.23Mbp, 146.67Mbp, 151.83Mbp] 2025-01-31 09:48:24,661 DEBUG chr5 time: 275.66410176700447 s 2025-01-31 09:48:24,719 DEBUG Processing 808/1128 atomic regions from SNP 242369 to 242969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,760 DEBUG Processing 817/1017 atomic regions from SNP 245018 to 245618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:24,804 DEBUG chr5: Fitting background model for 39 segments 2025-01-31 09:48:25,000 DEBUG Processing 809/1128 atomic regions from SNP 242669 to 243269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,028 DEBUG Processing 818/1017 atomic regions from SNP 245318 to 245918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,279 DEBUG Processing 810/1128 atomic regions from SNP 242969 to 243569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,298 DEBUG Processing 819/1017 atomic regions from SNP 245618 to 246218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,563 DEBUG Processing 811/1128 atomic regions from SNP 243269 to 243869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,575 DEBUG Processing 820/1017 atomic regions from SNP 245918 to 246518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:25,848 DEBUG Processing 812/1128 atomic regions from SNP 243569 to 244169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,854 DEBUG Processing 821/1017 atomic regions from SNP 246218 to 246818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,117 DEBUG Processing 822/1017 atomic regions from SNP 246518 to 247118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,126 DEBUG Processing 813/1128 atomic regions from SNP 243869 to 244469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,384 DEBUG Processing 823/1017 atomic regions from SNP 246818 to 247418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,413 DEBUG Processing 814/1128 atomic regions from SNP 244169 to 244769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,660 DEBUG Processing 824/1017 atomic regions from SNP 247118 to 247718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,695 DEBUG Processing 815/1128 atomic regions from SNP 244469 to 245069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,921 DEBUG Processing 825/1017 atomic regions from SNP 247418 to 248018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:26,971 DEBUG Processing 816/1128 atomic regions from SNP 244769 to 245369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,185 DEBUG Processing 826/1017 atomic regions from SNP 247718 to 248318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,251 DEBUG Processing 817/1128 atomic regions from SNP 245069 to 245669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,446 DEBUG Processing 827/1017 atomic regions from SNP 248018 to 248618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,533 DEBUG Processing 818/1128 atomic regions from SNP 245369 to 245969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,712 DEBUG Processing 828/1017 atomic regions from SNP 248318 to 248918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:27,838 DEBUG Processing 819/1128 atomic regions from SNP 245669 to 246269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,008 DEBUG Processing 829/1017 atomic regions from SNP 248618 to 249218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,130 DEBUG Processing 820/1128 atomic regions from SNP 245969 to 246569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,290 DEBUG Processing 830/1017 atomic regions from SNP 248918 to 249518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,411 DEBUG Processing 821/1128 atomic regions from SNP 246269 to 246869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,566 DEBUG Processing 831/1017 atomic regions from SNP 249218 to 249818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,698 DEBUG Processing 822/1128 atomic regions from SNP 246569 to 247169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,843 DEBUG Processing 832/1017 atomic regions from SNP 249518 to 250118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:28,975 DEBUG Processing 823/1128 atomic regions from SNP 246869 to 247469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,111 DEBUG Processing 833/1017 atomic regions from SNP 249818 to 250418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,251 DEBUG Processing 824/1128 atomic regions from SNP 247169 to 247769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,378 DEBUG Processing 834/1017 atomic regions from SNP 250118 to 250718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,538 DEBUG Processing 825/1128 atomic regions from SNP 247469 to 248069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,646 DEBUG Processing 835/1017 atomic regions from SNP 250418 to 251018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:29,737 DEBUG Subchromosome time: 282.4079427969409, subchromosome SNPs: 268229 2025-01-31 09:48:29,737 DEBUG Estimated BADs: [0.45, 1.81, 0.91, 3.63, 0.91, 1.81, 0.60, 0.18, 1.81, 16.32, 1.81, 0.45, 0.91, 3.63, 0.60, 1.81, 5.44, 14.51, 1.81, 16.32, 3.63, 5.44, 0.60, 3.63, 0.91, 3.63, 0.91, 3.63, 1.81, 7.25, 1.81, 0.18, 0.91, 1.81, 0.26, 1.81, 0.30, 1.81, 0.23] SNP counts: [9140, 2683, 14321, 1303, 11673, 19508, 7491, 7798, 5031, 987, 33582, 6591, 7689, 1317, 2105, 4518, 6948, 5041, 5735, 4466, 6094, 17004, 8997, 3886, 5717, 6893, 2103, 12306, 5182, 1414, 5705, 3890, 6606, 2401, 8066, 5776, 3848, 1817, 2597] SNP IDs counts: [9140, 2683, 14321, 1303, 11673, 19508, 7491, 7798, 5031, 987, 33582, 6591, 7689, 1317, 2105, 4518, 6948, 5041, 5735, 4466, 6094, 17004, 8997, 3886, 5717, 6893, 2103, 12306, 5182, 1414, 5705, 3890, 6606, 2401, 8066, 5776, 3848, 1817, 2597] Critical gap: 696191bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.62Mbp, 10.13Mbp, 19.16Mbp, 19.88Mbp, 26.92Mbp, 37.86Mbp, 42.48Mbp, 48.13Mbp, 51.16Mbp, 51.68Mbp, 70.98Mbp, 74.98Mbp, 79.51Mbp, 80.25Mbp, 81.48Mbp, 84.01Mbp, 87.73Mbp, 90.43Mbp, 94.31Mbp, 96.79Mbp, 100.36Mbp, 109.55Mbp, 115.15Mbp, 117.31Mbp, 120.52Mbp, 124.30Mbp, 125.48Mbp, 132.28Mbp, 135.28Mbp, 136.04Mbp, 139.23Mbp, 141.83Mbp, 145.54Mbp, 146.84Mbp, 151.66Mbp, 154.82Mbp, 157.15Mbp, 158.18Mbp, 160.04Mbp] 2025-01-31 09:48:29,737 DEBUG chr3 time: 282.4085841450142 s 2025-01-31 09:48:29,828 DEBUG Processing 826/1128 atomic regions from SNP 247769 to 248369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,899 DEBUG chr3: Fitting background model for 39 segments 2025-01-31 09:48:29,919 DEBUG Processing 836/1017 atomic regions from SNP 250718 to 251318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,112 DEBUG Processing 827/1128 atomic regions from SNP 248069 to 248669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,192 DEBUG Processing 837/1017 atomic regions from SNP 251018 to 251618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,404 DEBUG Processing 828/1128 atomic regions from SNP 248369 to 248969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,462 DEBUG Processing 838/1017 atomic regions from SNP 251318 to 251918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,690 DEBUG Processing 829/1128 atomic regions from SNP 248669 to 249269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,730 DEBUG Processing 839/1017 atomic regions from SNP 251618 to 252218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:30,982 DEBUG Processing 830/1128 atomic regions from SNP 248969 to 249569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,995 DEBUG Processing 840/1017 atomic regions from SNP 251918 to 252518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,271 DEBUG Processing 841/1017 atomic regions from SNP 252218 to 252818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,280 DEBUG Processing 831/1128 atomic regions from SNP 249269 to 249869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,547 DEBUG Processing 842/1017 atomic regions from SNP 252518 to 253118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,573 DEBUG Processing 832/1128 atomic regions from SNP 249569 to 250169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,821 DEBUG Processing 843/1017 atomic regions from SNP 252818 to 253418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:31,858 DEBUG Processing 833/1128 atomic regions from SNP 249869 to 250469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,101 DEBUG Processing 844/1017 atomic regions from SNP 253118 to 253718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,162 DEBUG Processing 834/1128 atomic regions from SNP 250169 to 250769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,373 DEBUG Processing 845/1017 atomic regions from SNP 253418 to 254018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,446 DEBUG Processing 835/1128 atomic regions from SNP 250469 to 251069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,651 DEBUG Processing 846/1017 atomic regions from SNP 253718 to 254318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:32,732 DEBUG Processing 836/1128 atomic regions from SNP 250769 to 251369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,925 DEBUG Processing 847/1017 atomic regions from SNP 254018 to 254618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,019 DEBUG Processing 837/1128 atomic regions from SNP 251069 to 251669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,199 DEBUG Processing 848/1017 atomic regions from SNP 254318 to 254918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,300 DEBUG Processing 838/1128 atomic regions from SNP 251369 to 251969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,476 DEBUG Processing 849/1017 atomic regions from SNP 254618 to 255218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,591 DEBUG Processing 839/1128 atomic regions from SNP 251669 to 252269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,748 DEBUG Processing 850/1017 atomic regions from SNP 254918 to 255518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:33,869 DEBUG Processing 840/1128 atomic regions from SNP 251969 to 252569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,013 DEBUG Processing 851/1017 atomic regions from SNP 255218 to 255818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,142 DEBUG Processing 841/1128 atomic regions from SNP 252269 to 252869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,269 DEBUG Processing 852/1017 atomic regions from SNP 255518 to 256118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,417 DEBUG Processing 842/1128 atomic regions from SNP 252569 to 253169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,526 DEBUG Processing 853/1017 atomic regions from SNP 255818 to 256418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,687 DEBUG Processing 843/1128 atomic regions from SNP 252869 to 253469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,791 DEBUG Processing 854/1017 atomic regions from SNP 256118 to 256718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:34,964 DEBUG Processing 844/1128 atomic regions from SNP 253169 to 253769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,052 DEBUG Processing 855/1017 atomic regions from SNP 256418 to 257018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,238 DEBUG Processing 845/1128 atomic regions from SNP 253469 to 254069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,320 DEBUG Processing 856/1017 atomic regions from SNP 256718 to 257318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,519 DEBUG Processing 846/1128 atomic regions from SNP 253769 to 254369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,583 DEBUG Processing 857/1017 atomic regions from SNP 257018 to 257618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:35,797 DEBUG Processing 847/1128 atomic regions from SNP 254069 to 254669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,853 DEBUG Processing 858/1017 atomic regions from SNP 257318 to 257918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,072 DEBUG Processing 848/1128 atomic regions from SNP 254369 to 254969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,121 DEBUG Processing 859/1017 atomic regions from SNP 257618 to 258218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,346 DEBUG Processing 849/1128 atomic regions from SNP 254669 to 255269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,390 DEBUG Processing 860/1017 atomic regions from SNP 257918 to 258518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,626 DEBUG Processing 850/1128 atomic regions from SNP 254969 to 255569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,671 DEBUG Processing 861/1017 atomic regions from SNP 258218 to 258818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:36,905 DEBUG Processing 851/1128 atomic regions from SNP 255269 to 255869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,942 DEBUG Processing 862/1017 atomic regions from SNP 258518 to 259118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,188 DEBUG Processing 852/1128 atomic regions from SNP 255569 to 256169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,212 DEBUG Processing 863/1017 atomic regions from SNP 258818 to 259418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,462 DEBUG Processing 853/1128 atomic regions from SNP 255869 to 256469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,481 DEBUG Processing 864/1017 atomic regions from SNP 259118 to 259718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:37,740 DEBUG Processing 854/1128 atomic regions from SNP 256169 to 256769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,748 DEBUG Processing 865/1017 atomic regions from SNP 259418 to 260018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,026 DEBUG Processing 866/1017 atomic regions from SNP 259718 to 260318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,037 DEBUG Processing 855/1128 atomic regions from SNP 256469 to 257069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,299 DEBUG Processing 867/1017 atomic regions from SNP 260018 to 260618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,350 DEBUG Processing 856/1128 atomic regions from SNP 256769 to 257369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,572 DEBUG Processing 868/1017 atomic regions from SNP 260318 to 260918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,630 DEBUG Processing 857/1128 atomic regions from SNP 257069 to 257669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,852 DEBUG Processing 869/1017 atomic regions from SNP 260618 to 261218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:38,904 DEBUG Processing 858/1128 atomic regions from SNP 257369 to 257969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,134 DEBUG Processing 870/1017 atomic regions from SNP 260918 to 261518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,180 DEBUG Processing 859/1128 atomic regions from SNP 257669 to 258269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,423 DEBUG Processing 871/1017 atomic regions from SNP 261218 to 261818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,477 DEBUG Processing 860/1128 atomic regions from SNP 257969 to 258569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,689 DEBUG Processing 872/1017 atomic regions from SNP 261518 to 262118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:39,783 DEBUG Processing 861/1128 atomic regions from SNP 258269 to 258869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,969 DEBUG Processing 873/1017 atomic regions from SNP 261818 to 262418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,097 DEBUG Processing 862/1128 atomic regions from SNP 258569 to 259169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,251 DEBUG Processing 874/1017 atomic regions from SNP 262118 to 262718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,379 DEBUG Processing 863/1128 atomic regions from SNP 258869 to 259469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,524 DEBUG Processing 875/1017 atomic regions from SNP 262418 to 263018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,673 DEBUG Processing 864/1128 atomic regions from SNP 259169 to 259769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,810 DEBUG Processing 876/1017 atomic regions from SNP 262718 to 263318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:40,974 DEBUG Processing 865/1128 atomic regions from SNP 259469 to 260069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,100 DEBUG Processing 877/1017 atomic regions from SNP 263018 to 263618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,277 DEBUG Processing 866/1128 atomic regions from SNP 259769 to 260369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,401 DEBUG Processing 878/1017 atomic regions from SNP 263318 to 263918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,565 DEBUG Processing 867/1128 atomic regions from SNP 260069 to 260669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,688 DEBUG Processing 879/1017 atomic regions from SNP 263618 to 264218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:41,872 DEBUG Processing 868/1128 atomic regions from SNP 260369 to 260969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,002 DEBUG Processing 880/1017 atomic regions from SNP 263918 to 264518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,168 DEBUG Processing 869/1128 atomic regions from SNP 260669 to 261269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,294 DEBUG Processing 881/1017 atomic regions from SNP 264218 to 264818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,447 DEBUG Processing 870/1128 atomic regions from SNP 260969 to 261569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,581 DEBUG Processing 882/1017 atomic regions from SNP 264518 to 265118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:42,671 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:48:42,673 DEBUG chr6: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.012 2025-01-31 09:48:42,741 DEBUG Processing 871/1128 atomic regions from SNP 261269 to 261869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,878 DEBUG Processing 883/1017 atomic regions from SNP 264818 to 265418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,022 DEBUG Processing 872/1128 atomic regions from SNP 261569 to 262169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,167 DEBUG Processing 884/1017 atomic regions from SNP 265118 to 265718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,312 DEBUG Processing 873/1128 atomic regions from SNP 261869 to 262469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,466 DEBUG Processing 885/1017 atomic regions from SNP 265418 to 266018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,600 DEBUG Processing 874/1128 atomic regions from SNP 262169 to 262769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,754 DEBUG Processing 886/1017 atomic regions from SNP 265718 to 266318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:43,897 DEBUG Processing 875/1128 atomic regions from SNP 262469 to 263069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,030 DEBUG Processing 887/1017 atomic regions from SNP 266018 to 266618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,183 DEBUG Processing 876/1128 atomic regions from SNP 262769 to 263369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,307 DEBUG Processing 888/1017 atomic regions from SNP 266318 to 266918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,467 DEBUG Processing 877/1128 atomic regions from SNP 263069 to 263669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,576 DEBUG Processing 889/1017 atomic regions from SNP 266618 to 267218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:44,770 DEBUG Processing 878/1128 atomic regions from SNP 263369 to 263969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,853 DEBUG Processing 890/1017 atomic regions from SNP 266918 to 267518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,062 DEBUG Processing 879/1128 atomic regions from SNP 263669 to 264269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,154 DEBUG Processing 891/1017 atomic regions from SNP 267218 to 267818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,348 DEBUG Processing 880/1128 atomic regions from SNP 263969 to 264569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,468 DEBUG Processing 892/1017 atomic regions from SNP 267518 to 268118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,514 DEBUG chr6 total SNP count: 255664 2025-01-31 09:48:45,514 DEBUG chr6 length: 149736546 2025-01-31 09:48:45,514 DEBUG ----------------------------------------- 2025-01-31 09:48:45,514 INFO Processing SNPs in chr6 2025-01-31 09:48:45,640 DEBUG Processing 881/1128 atomic regions from SNP 264269 to 264869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,770 DEBUG Processing 893/1017 atomic regions from SNP 267818 to 268418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:45,773 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 255664)] 2025-01-31 09:48:45,926 DEBUG Processing 882/1128 atomic regions from SNP 264569 to 265169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,952 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:46,055 DEBUG Processing 894/1017 atomic regions from SNP 268118 to 268718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,211 DEBUG Processing 883/1128 atomic regions from SNP 264869 to 265469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,346 DEBUG Processing 895/1017 atomic regions from SNP 268418 to 269018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,522 DEBUG Processing 884/1128 atomic regions from SNP 265169 to 265769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,621 DEBUG Processing 896/1017 atomic regions from SNP 268718 to 269318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:46,844 DEBUG Processing 885/1128 atomic regions from SNP 265469 to 266069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,899 DEBUG Processing 897/1017 atomic regions from SNP 269018 to 269618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,149 DEBUG Processing 886/1128 atomic regions from SNP 265769 to 266369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,191 DEBUG Processing 898/1017 atomic regions from SNP 269318 to 269918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,453 DEBUG Processing 887/1128 atomic regions from SNP 266069 to 266669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,486 DEBUG Processing 899/1017 atomic regions from SNP 269618 to 270218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:47,766 DEBUG Processing 888/1128 atomic regions from SNP 266369 to 266969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,781 DEBUG Processing 900/1017 atomic regions from SNP 269918 to 270518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,075 DEBUG Processing 901/1017 atomic regions from SNP 270218 to 270818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,077 DEBUG Processing 889/1128 atomic regions from SNP 266669 to 267269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,364 DEBUG Processing 902/1017 atomic regions from SNP 270518 to 271118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,396 DEBUG Processing 890/1128 atomic regions from SNP 266969 to 267569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,642 DEBUG Processing 903/1017 atomic regions from SNP 270818 to 271418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:48,712 DEBUG Processing 891/1128 atomic regions from SNP 267269 to 267869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,941 DEBUG Processing 904/1017 atomic regions from SNP 271118 to 271718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,027 DEBUG Processing 892/1128 atomic regions from SNP 267569 to 268169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,242 DEBUG Processing 905/1017 atomic regions from SNP 271418 to 272018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,329 DEBUG Processing 893/1128 atomic regions from SNP 267869 to 268469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,536 DEBUG Processing 906/1017 atomic regions from SNP 271718 to 272318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,629 DEBUG Processing 894/1128 atomic regions from SNP 268169 to 268769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,822 DEBUG Processing 907/1017 atomic regions from SNP 272018 to 272618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:49,953 DEBUG Processing 895/1128 atomic regions from SNP 268469 to 269069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,102 DEBUG Processing 908/1017 atomic regions from SNP 272318 to 272918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,273 DEBUG Processing 896/1128 atomic regions from SNP 268769 to 269369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,386 DEBUG Processing 909/1017 atomic regions from SNP 272618 to 273218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,586 DEBUG Processing 897/1128 atomic regions from SNP 269069 to 269669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,687 DEBUG Processing 910/1017 atomic regions from SNP 272918 to 273518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:50,869 DEBUG Processing 898/1128 atomic regions from SNP 269369 to 269969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,973 DEBUG Processing 911/1017 atomic regions from SNP 273218 to 273818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,186 DEBUG Processing 899/1128 atomic regions from SNP 269669 to 270269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,246 DEBUG Processing 912/1017 atomic regions from SNP 273518 to 274118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,493 DEBUG Processing 900/1128 atomic regions from SNP 269969 to 270569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,520 DEBUG Processing 913/1017 atomic regions from SNP 273818 to 274418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:51,797 DEBUG Processing 901/1128 atomic regions from SNP 270269 to 270869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,812 DEBUG Processing 914/1017 atomic regions from SNP 274118 to 274718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,094 DEBUG Processing 902/1128 atomic regions from SNP 270569 to 271169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,108 DEBUG Processing 915/1017 atomic regions from SNP 274418 to 275018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,379 DEBUG Processing 903/1128 atomic regions from SNP 270869 to 271469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,394 DEBUG Processing 916/1017 atomic regions from SNP 274718 to 275318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,670 DEBUG Processing 904/1128 atomic regions from SNP 271169 to 271769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,691 DEBUG Processing 917/1017 atomic regions from SNP 275018 to 275618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:52,961 DEBUG Processing 905/1128 atomic regions from SNP 271469 to 272069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,995 DEBUG Processing 918/1017 atomic regions from SNP 275318 to 275918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,260 DEBUG Processing 906/1128 atomic regions from SNP 271769 to 272369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,284 DEBUG Processing 919/1017 atomic regions from SNP 275618 to 276218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,548 DEBUG Processing 907/1128 atomic regions from SNP 272069 to 272669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,558 DEBUG Processing 920/1017 atomic regions from SNP 275918 to 276518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:53,831 DEBUG Processing 908/1128 atomic regions from SNP 272369 to 272969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,832 DEBUG Processing 921/1017 atomic regions from SNP 276218 to 276818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,099 DEBUG Processing 922/1017 atomic regions from SNP 276518 to 277118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,113 DEBUG Processing 909/1128 atomic regions from SNP 272669 to 273269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,367 DEBUG Processing 923/1017 atomic regions from SNP 276818 to 277418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,416 DEBUG Processing 910/1128 atomic regions from SNP 272969 to 273569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,633 DEBUG Processing 924/1017 atomic regions from SNP 277118 to 277718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:54,711 DEBUG Processing 911/1128 atomic regions from SNP 273269 to 273869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,899 DEBUG Processing 925/1017 atomic regions from SNP 277418 to 278018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,001 DEBUG Processing 912/1128 atomic regions from SNP 273569 to 274169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,169 DEBUG Processing 926/1017 atomic regions from SNP 277718 to 278318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,293 DEBUG Processing 913/1128 atomic regions from SNP 273869 to 274469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,445 DEBUG Processing 927/1017 atomic regions from SNP 278018 to 278618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,576 DEBUG Processing 914/1128 atomic regions from SNP 274169 to 274769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,721 DEBUG Processing 928/1017 atomic regions from SNP 278318 to 278918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:55,868 DEBUG Processing 915/1128 atomic regions from SNP 274469 to 275069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,003 DEBUG Processing 929/1017 atomic regions from SNP 278618 to 279218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,180 DEBUG Processing 916/1128 atomic regions from SNP 274769 to 275369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,282 DEBUG Processing 930/1017 atomic regions from SNP 278918 to 279518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,482 DEBUG Processing 917/1128 atomic regions from SNP 275069 to 275669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,553 DEBUG Processing 931/1017 atomic regions from SNP 279218 to 279818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:56,773 DEBUG Processing 918/1128 atomic regions from SNP 275369 to 275969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,816 DEBUG Processing 932/1017 atomic regions from SNP 279518 to 280118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,057 DEBUG Processing 919/1128 atomic regions from SNP 275669 to 276269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,085 DEBUG Processing 933/1017 atomic regions from SNP 279818 to 280418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,353 DEBUG Processing 934/1017 atomic regions from SNP 280118 to 280718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,373 DEBUG Processing 920/1128 atomic regions from SNP 275969 to 276569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,632 DEBUG Processing 935/1017 atomic regions from SNP 280418 to 281018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:57,704 DEBUG Processing 921/1128 atomic regions from SNP 276269 to 276869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,895 DEBUG Processing 936/1017 atomic regions from SNP 280718 to 281318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,027 DEBUG Processing 922/1128 atomic regions from SNP 276569 to 277169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,150 DEBUG Processing 937/1017 atomic regions from SNP 281018 to 281618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,350 DEBUG Processing 923/1128 atomic regions from SNP 276869 to 277469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,410 DEBUG Processing 938/1017 atomic regions from SNP 281318 to 281918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,637 DEBUG Processing 924/1128 atomic regions from SNP 277169 to 277769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,675 DEBUG Processing 939/1017 atomic regions from SNP 281618 to 282218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:58,929 DEBUG Processing 925/1128 atomic regions from SNP 277469 to 278069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,960 DEBUG Processing 940/1017 atomic regions from SNP 281918 to 282518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,234 DEBUG Processing 941/1017 atomic regions from SNP 282218 to 282818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,242 DEBUG Processing 926/1128 atomic regions from SNP 277769 to 278369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,512 DEBUG Processing 942/1017 atomic regions from SNP 282518 to 283118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,571 DEBUG Processing 927/1128 atomic regions from SNP 278069 to 278669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,795 DEBUG Processing 943/1017 atomic regions from SNP 282818 to 283418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:59,895 DEBUG Processing 928/1128 atomic regions from SNP 278369 to 278969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,086 DEBUG Processing 944/1017 atomic regions from SNP 283118 to 283718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,220 DEBUG Processing 929/1128 atomic regions from SNP 278669 to 279269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,426 DEBUG Processing 945/1017 atomic regions from SNP 283418 to 284018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,588 DEBUG Processing 930/1128 atomic regions from SNP 278969 to 279569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,718 DEBUG Processing 946/1017 atomic regions from SNP 283718 to 284318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:00,916 DEBUG Processing 931/1128 atomic regions from SNP 279269 to 279869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,022 DEBUG Processing 947/1017 atomic regions from SNP 284018 to 284618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,222 DEBUG Processing 932/1128 atomic regions from SNP 279569 to 280169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,322 DEBUG Processing 948/1017 atomic regions from SNP 284318 to 284918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,516 DEBUG Processing 933/1128 atomic regions from SNP 279869 to 280469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,596 DEBUG Processing 949/1017 atomic regions from SNP 284618 to 285218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:01,810 DEBUG Processing 934/1128 atomic regions from SNP 280169 to 280769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,880 DEBUG Processing 950/1017 atomic regions from SNP 284918 to 285518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,104 DEBUG Processing 935/1128 atomic regions from SNP 280469 to 281069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,155 DEBUG Processing 951/1017 atomic regions from SNP 285218 to 285818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,401 DEBUG Processing 936/1128 atomic regions from SNP 280769 to 281369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,427 DEBUG Processing 952/1017 atomic regions from SNP 285518 to 286118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,686 DEBUG Processing 937/1128 atomic regions from SNP 281069 to 281669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,707 DEBUG Processing 953/1017 atomic regions from SNP 285818 to 286418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:02,975 DEBUG Processing 938/1128 atomic regions from SNP 281369 to 281969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,996 DEBUG Processing 954/1017 atomic regions from SNP 286118 to 286718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,269 DEBUG Processing 939/1128 atomic regions from SNP 281669 to 282269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,311 DEBUG Processing 955/1017 atomic regions from SNP 286418 to 287018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,554 DEBUG Processing 940/1128 atomic regions from SNP 281969 to 282569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,611 DEBUG Processing 956/1017 atomic regions from SNP 286718 to 287318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:03,859 DEBUG Processing 941/1128 atomic regions from SNP 282269 to 282869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:03,894 DEBUG Processing 957/1017 atomic regions from SNP 287018 to 287618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,159 DEBUG Processing 942/1128 atomic regions from SNP 282569 to 283169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,175 DEBUG Processing 958/1017 atomic regions from SNP 287318 to 287918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,447 DEBUG Processing 943/1128 atomic regions from SNP 282869 to 283469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:04,450 DEBUG Processing 959/1017 atomic regions from SNP 287618 to 288218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,732 DEBUG Processing 960/1017 atomic regions from SNP 287918 to 288518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:04,734 DEBUG Processing 944/1128 atomic regions from SNP 283169 to 283769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,031 DEBUG Processing 961/1017 atomic regions from SNP 288218 to 288818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,034 DEBUG Processing 945/1128 atomic regions from SNP 283469 to 284069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,336 DEBUG Processing 962/1017 atomic regions from SNP 288518 to 289118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,343 DEBUG Processing 946/1128 atomic regions from SNP 283769 to 284369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,642 DEBUG Processing 963/1017 atomic regions from SNP 288818 to 289418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,655 DEBUG Processing 947/1128 atomic regions from SNP 284069 to 284669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:05,921 DEBUG Processing 964/1017 atomic regions from SNP 289118 to 289718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:05,961 DEBUG Processing 948/1128 atomic regions from SNP 284369 to 284969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,194 DEBUG Processing 965/1017 atomic regions from SNP 289418 to 290018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,277 DEBUG Processing 949/1128 atomic regions from SNP 284669 to 285269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,477 DEBUG Processing 966/1017 atomic regions from SNP 289718 to 290318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,595 DEBUG Processing 950/1128 atomic regions from SNP 284969 to 285569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:06,759 DEBUG Processing 967/1017 atomic regions from SNP 290018 to 290618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:06,913 DEBUG Processing 951/1128 atomic regions from SNP 285269 to 285869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,045 DEBUG Processing 968/1017 atomic regions from SNP 290318 to 290918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,233 DEBUG Processing 952/1128 atomic regions from SNP 285569 to 286169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,349 DEBUG Processing 969/1017 atomic regions from SNP 290618 to 291218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,536 DEBUG Processing 953/1128 atomic regions from SNP 285869 to 286469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,649 DEBUG Processing 970/1017 atomic regions from SNP 290918 to 291518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:07,819 DEBUG Processing 954/1128 atomic regions from SNP 286169 to 286769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:07,949 DEBUG Processing 971/1017 atomic regions from SNP 291218 to 291818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,107 DEBUG Processing 955/1128 atomic regions from SNP 286469 to 287069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,257 DEBUG Processing 972/1017 atomic regions from SNP 291518 to 292118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,392 DEBUG Processing 956/1128 atomic regions from SNP 286769 to 287369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,565 DEBUG Processing 973/1017 atomic regions from SNP 291818 to 292418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,677 DEBUG Processing 957/1128 atomic regions from SNP 287069 to 287669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:08,858 DEBUG Processing 974/1017 atomic regions from SNP 292118 to 292718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:08,965 DEBUG Processing 958/1128 atomic regions from SNP 287369 to 287969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,167 DEBUG Processing 975/1017 atomic regions from SNP 292418 to 293018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,279 DEBUG Processing 959/1128 atomic regions from SNP 287669 to 288269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,469 DEBUG Processing 976/1017 atomic regions from SNP 292718 to 293318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,594 DEBUG Processing 960/1128 atomic regions from SNP 287969 to 288569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:09,751 DEBUG Processing 977/1017 atomic regions from SNP 293018 to 293618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:09,885 DEBUG Processing 961/1128 atomic regions from SNP 288269 to 288869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,026 DEBUG Processing 978/1017 atomic regions from SNP 293318 to 293918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,186 DEBUG Processing 962/1128 atomic regions from SNP 288569 to 289169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,299 DEBUG Processing 979/1017 atomic regions from SNP 293618 to 294218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,483 DEBUG Processing 963/1128 atomic regions from SNP 288869 to 289469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,563 DEBUG Processing 980/1017 atomic regions from SNP 293918 to 294518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:10,770 DEBUG Processing 964/1128 atomic regions from SNP 289169 to 289769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:10,829 DEBUG Processing 981/1017 atomic regions from SNP 294218 to 294818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,081 DEBUG Processing 965/1128 atomic regions from SNP 289469 to 290069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,096 DEBUG Processing 982/1017 atomic regions from SNP 294518 to 295118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,369 DEBUG Processing 983/1017 atomic regions from SNP 294818 to 295418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,397 DEBUG Processing 966/1128 atomic regions from SNP 289769 to 290369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,644 DEBUG Processing 984/1017 atomic regions from SNP 295118 to 295718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,688 DEBUG Processing 967/1128 atomic regions from SNP 290069 to 290669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:11,913 DEBUG Processing 985/1017 atomic regions from SNP 295418 to 296018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:11,973 DEBUG Processing 968/1128 atomic regions from SNP 290369 to 290969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,176 DEBUG Processing 986/1017 atomic regions from SNP 295718 to 296318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,264 DEBUG Processing 969/1128 atomic regions from SNP 290669 to 291269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,440 DEBUG Processing 987/1017 atomic regions from SNP 296018 to 296618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,551 DEBUG Processing 970/1128 atomic regions from SNP 290969 to 291569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:12,727 DEBUG Processing 988/1017 atomic regions from SNP 296318 to 296918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:12,836 DEBUG Processing 971/1128 atomic regions from SNP 291269 to 291869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,039 DEBUG Processing 989/1017 atomic regions from SNP 296618 to 297218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,125 DEBUG Processing 972/1128 atomic regions from SNP 291569 to 292169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,330 DEBUG Processing 990/1017 atomic regions from SNP 296918 to 297518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,415 DEBUG Processing 973/1128 atomic regions from SNP 291869 to 292469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,608 DEBUG Processing 991/1017 atomic regions from SNP 297218 to 297818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,700 DEBUG Processing 974/1128 atomic regions from SNP 292169 to 292769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:13,879 DEBUG Processing 992/1017 atomic regions from SNP 297518 to 298118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:13,985 DEBUG Processing 975/1128 atomic regions from SNP 292469 to 293069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,150 DEBUG Processing 993/1017 atomic regions from SNP 297818 to 298418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,280 DEBUG Processing 976/1128 atomic regions from SNP 292769 to 293369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,419 DEBUG Processing 994/1017 atomic regions from SNP 298118 to 298718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,582 DEBUG Processing 977/1128 atomic regions from SNP 293069 to 293669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,682 DEBUG Processing 995/1017 atomic regions from SNP 298418 to 299018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:14,874 DEBUG Processing 978/1128 atomic regions from SNP 293369 to 293969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:14,948 DEBUG Processing 996/1017 atomic regions from SNP 298718 to 299318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,173 DEBUG Processing 979/1128 atomic regions from SNP 293669 to 294269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,217 DEBUG Processing 997/1017 atomic regions from SNP 299018 to 299618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,471 DEBUG Processing 980/1128 atomic regions from SNP 293969 to 294569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:15,485 DEBUG Processing 998/1017 atomic regions from SNP 299318 to 299918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,747 DEBUG Processing 999/1017 atomic regions from SNP 299618 to 300218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:15,781 DEBUG Processing 981/1128 atomic regions from SNP 294269 to 294869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,014 DEBUG Processing 1000/1017 atomic regions from SNP 299918 to 300518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,097 DEBUG Processing 982/1128 atomic regions from SNP 294569 to 295169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,286 DEBUG Processing 1001/1017 atomic regions from SNP 300218 to 300818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,416 DEBUG Processing 983/1128 atomic regions from SNP 294869 to 295469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,585 DEBUG Processing 1002/1017 atomic regions from SNP 300518 to 301118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:16,733 DEBUG Processing 984/1128 atomic regions from SNP 295169 to 295769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:16,866 DEBUG Processing 1003/1017 atomic regions from SNP 300818 to 301418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,042 DEBUG Processing 985/1128 atomic regions from SNP 295469 to 296069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,126 DEBUG Processing 1004/1017 atomic regions from SNP 301118 to 301718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,322 DEBUG Processing 986/1128 atomic regions from SNP 295769 to 296369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,392 DEBUG Processing 1005/1017 atomic regions from SNP 301418 to 302018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,509 DEBUG Segmenting atomic regions: 2025-01-31 09:49:17,600 DEBUG Processing 987/1128 atomic regions from SNP 296069 to 296669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,624 DEBUG Processing 1/851 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,682 DEBUG Processing 1006/1017 atomic regions from SNP 301718 to 302318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:17,872 DEBUG Processing 2/851 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,917 DEBUG Processing 988/1128 atomic regions from SNP 296369 to 296969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:17,968 DEBUG Processing 1007/1017 atomic regions from SNP 302018 to 302618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,117 DEBUG Processing 3/851 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,241 DEBUG Processing 989/1128 atomic regions from SNP 296669 to 297269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,246 DEBUG Processing 1008/1017 atomic regions from SNP 302318 to 302918 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,357 DEBUG Processing 4/851 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,518 DEBUG Processing 1009/1017 atomic regions from SNP 302618 to 303218 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,557 DEBUG Processing 990/1128 atomic regions from SNP 296969 to 297569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,604 DEBUG Processing 5/851 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,785 DEBUG Processing 1010/1017 atomic regions from SNP 302918 to 303518 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:18,849 DEBUG Processing 991/1128 atomic regions from SNP 297269 to 297869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:18,852 DEBUG Processing 6/851 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,046 DEBUG Processing 1011/1017 atomic regions from SNP 303218 to 303818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,099 DEBUG Processing 7/851 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,140 DEBUG Processing 992/1128 atomic regions from SNP 297569 to 298169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,310 DEBUG Processing 1012/1017 atomic regions from SNP 303518 to 304118 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,341 DEBUG Processing 8/851 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,420 DEBUG Processing 993/1128 atomic regions from SNP 297869 to 298469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,573 DEBUG Processing 1013/1017 atomic regions from SNP 303818 to 304418 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,581 DEBUG Processing 9/851 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,699 DEBUG Processing 994/1128 atomic regions from SNP 298169 to 298769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:19,854 DEBUG Processing 10/851 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,860 DEBUG Processing 1014/1017 atomic regions from SNP 304118 to 304718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:19,978 DEBUG Processing 995/1128 atomic regions from SNP 298469 to 299069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,099 DEBUG Processing 11/851 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,154 DEBUG Processing 1015/1017 atomic regions from SNP 304418 to 305018 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,264 DEBUG Processing 996/1128 atomic regions from SNP 298769 to 299369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,341 DEBUG Processing 12/851 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,424 DEBUG Processing 1016/1017 atomic regions from SNP 304718 to 305318 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,543 DEBUG Processing 997/1128 atomic regions from SNP 299069 to 299669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,596 DEBUG Processing 13/851 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,684 DEBUG Processing 1017/1017 atomic regions from SNP 305018 to 305618 for chr2 (subchromosome 1 of 2). 2025-01-31 09:49:20,819 DEBUG Unique SNPs positions in subchromosome 1: 305619 2025-01-31 09:49:20,824 DEBUG Processing 998/1128 atomic regions from SNP 299369 to 299969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:20,877 DEBUG Processing 14/851 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,115 DEBUG Processing 999/1128 atomic regions from SNP 299669 to 300269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,126 DEBUG Processing 15/851 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,378 DEBUG Processing 16/851 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,410 DEBUG Processing 1000/1128 atomic regions from SNP 299969 to 300569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,626 DEBUG Processing 17/851 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,694 DEBUG Processing 1001/1128 atomic regions from SNP 300269 to 300869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:21,866 DEBUG Processing 18/851 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,974 DEBUG Processing 1002/1128 atomic regions from SNP 300569 to 301169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,104 DEBUG Processing 19/851 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,254 DEBUG Processing 1003/1128 atomic regions from SNP 300869 to 301469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,342 DEBUG Processing 20/851 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,533 DEBUG Processing 1004/1128 atomic regions from SNP 301169 to 301769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,577 DEBUG Processing 21/851 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,818 DEBUG Processing 1005/1128 atomic regions from SNP 301469 to 302069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:22,818 DEBUG Processing 22/851 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,053 DEBUG Processing 23/851 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,094 DEBUG Processing 1006/1128 atomic regions from SNP 301769 to 302369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,290 DEBUG Processing 24/851 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,376 DEBUG Processing 1007/1128 atomic regions from SNP 302069 to 302669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,523 DEBUG Processing 25/851 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,665 DEBUG Processing 1008/1128 atomic regions from SNP 302369 to 302969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:23,758 DEBUG Processing 26/851 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,947 DEBUG Processing 1009/1128 atomic regions from SNP 302669 to 303269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,010 DEBUG Processing 27/851 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,234 DEBUG Processing 1010/1128 atomic regions from SNP 302969 to 303569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,278 DEBUG Processing 28/851 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,513 DEBUG Processing 1011/1128 atomic regions from SNP 303269 to 303869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:24,528 DEBUG Processing 29/851 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,778 DEBUG Processing 30/851 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,801 DEBUG Processing 1012/1128 atomic regions from SNP 303569 to 304169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,046 DEBUG Processing 31/851 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,102 DEBUG Processing 1013/1128 atomic regions from SNP 303869 to 304469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,333 DEBUG Processing 32/851 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,400 DEBUG Processing 1014/1128 atomic regions from SNP 304169 to 304769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,594 DEBUG Processing 33/851 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,688 DEBUG Processing 1015/1128 atomic regions from SNP 304469 to 305069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:25,834 DEBUG Processing 34/851 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,005 DEBUG Processing 1016/1128 atomic regions from SNP 304769 to 305369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,068 DEBUG Processing 35/851 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,298 DEBUG Processing 1017/1128 atomic regions from SNP 305069 to 305669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,312 DEBUG Processing 36/851 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,557 DEBUG Processing 37/851 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,582 DEBUG Processing 1018/1128 atomic regions from SNP 305369 to 305969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:26,798 DEBUG Processing 38/851 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,864 DEBUG Processing 1019/1128 atomic regions from SNP 305669 to 306269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,041 DEBUG Processing 39/851 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,160 DEBUG Processing 1020/1128 atomic regions from SNP 305969 to 306569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,282 DEBUG Processing 40/851 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,448 DEBUG Processing 1021/1128 atomic regions from SNP 306269 to 306869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,526 DEBUG Processing 41/851 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,736 DEBUG Processing 1022/1128 atomic regions from SNP 306569 to 307169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:27,774 DEBUG Processing 42/851 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,027 DEBUG Processing 1023/1128 atomic regions from SNP 306869 to 307469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,027 DEBUG Processing 43/851 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,275 DEBUG Processing 44/851 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,330 DEBUG Processing 1024/1128 atomic regions from SNP 307169 to 307769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,523 DEBUG Processing 45/851 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,657 DEBUG Processing 1025/1128 atomic regions from SNP 307469 to 308069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:28,773 DEBUG Processing 46/851 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,957 DEBUG Processing 1026/1128 atomic regions from SNP 307769 to 308369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,017 DEBUG Processing 47/851 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,247 DEBUG Processing 1027/1128 atomic regions from SNP 308069 to 308669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,262 DEBUG Processing 48/851 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,513 DEBUG Processing 49/851 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,539 DEBUG Processing 1028/1128 atomic regions from SNP 308369 to 308969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:29,771 DEBUG Processing 50/851 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,843 DEBUG Processing 1029/1128 atomic regions from SNP 308669 to 309269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,029 DEBUG Processing 51/851 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,152 DEBUG Processing 1030/1128 atomic regions from SNP 308969 to 309569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,284 DEBUG Processing 52/851 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,460 DEBUG Processing 1031/1128 atomic regions from SNP 309269 to 309869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,538 DEBUG Processing 53/851 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,774 DEBUG Processing 1032/1128 atomic regions from SNP 309569 to 310169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:30,791 DEBUG Processing 54/851 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,044 DEBUG Processing 55/851 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,108 DEBUG Processing 1033/1128 atomic regions from SNP 309869 to 310469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,310 DEBUG Processing 56/851 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,454 DEBUG Processing 1034/1128 atomic regions from SNP 310169 to 310769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,566 DEBUG Processing 57/851 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,776 DEBUG Processing 1035/1128 atomic regions from SNP 310469 to 311069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:31,822 DEBUG Processing 58/851 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,082 DEBUG Processing 59/851 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,089 DEBUG Processing 1036/1128 atomic regions from SNP 310769 to 311369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,340 DEBUG Processing 60/851 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,422 DEBUG Processing 1037/1128 atomic regions from SNP 311069 to 311669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,594 DEBUG Processing 61/851 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,754 DEBUG Processing 1038/1128 atomic regions from SNP 311369 to 311969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:32,855 DEBUG Processing 62/851 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,074 DEBUG Processing 1039/1128 atomic regions from SNP 311669 to 312269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,111 DEBUG Processing 63/851 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,369 DEBUG Processing 64/851 atomic regions from SNP 18963 to 19563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,408 DEBUG Processing 1040/1128 atomic regions from SNP 311969 to 312569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,625 DEBUG Processing 65/851 atomic regions from SNP 19263 to 19863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,737 DEBUG Processing 1041/1128 atomic regions from SNP 312269 to 312869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:33,878 DEBUG Processing 66/851 atomic regions from SNP 19563 to 20163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,067 DEBUG Processing 1042/1128 atomic regions from SNP 312569 to 313169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,130 DEBUG Processing 67/851 atomic regions from SNP 19863 to 20463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,379 DEBUG Processing 68/851 atomic regions from SNP 20163 to 20763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,404 DEBUG Processing 1043/1128 atomic regions from SNP 312869 to 313469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,629 DEBUG Processing 69/851 atomic regions from SNP 20463 to 21063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,744 DEBUG Processing 1044/1128 atomic regions from SNP 313169 to 313769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:34,875 DEBUG Processing 70/851 atomic regions from SNP 20763 to 21363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,058 DEBUG Processing 1045/1128 atomic regions from SNP 313469 to 314069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,126 DEBUG Processing 71/851 atomic regions from SNP 21063 to 21663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,359 DEBUG Processing 1046/1128 atomic regions from SNP 313769 to 314369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,379 DEBUG Processing 72/851 atomic regions from SNP 21363 to 21963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,634 DEBUG Processing 73/851 atomic regions from SNP 21663 to 22263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,680 DEBUG Processing 1047/1128 atomic regions from SNP 314069 to 314669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:35,885 DEBUG Processing 74/851 atomic regions from SNP 21963 to 22563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,984 DEBUG Processing 1048/1128 atomic regions from SNP 314369 to 314969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,146 DEBUG Processing 75/851 atomic regions from SNP 22263 to 22863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,311 DEBUG Processing 1049/1128 atomic regions from SNP 314669 to 315269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,396 DEBUG Processing 76/851 atomic regions from SNP 22563 to 23163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,627 DEBUG Processing 1050/1128 atomic regions from SNP 314969 to 315569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:36,653 DEBUG Processing 77/851 atomic regions from SNP 22863 to 23463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,910 DEBUG Processing 78/851 atomic regions from SNP 23163 to 23763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,943 DEBUG Processing 1051/1128 atomic regions from SNP 315269 to 315869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,165 DEBUG Processing 79/851 atomic regions from SNP 23463 to 24063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,240 DEBUG Processing 1052/1128 atomic regions from SNP 315569 to 316169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,416 DEBUG Processing 80/851 atomic regions from SNP 23763 to 24363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,531 DEBUG Processing 1053/1128 atomic regions from SNP 315869 to 316469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,669 DEBUG Processing 81/851 atomic regions from SNP 24063 to 24663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,838 DEBUG Processing 1054/1128 atomic regions from SNP 316169 to 316769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:37,925 DEBUG Processing 82/851 atomic regions from SNP 24363 to 24963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,140 DEBUG Processing 1055/1128 atomic regions from SNP 316469 to 317069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,203 DEBUG Processing 83/851 atomic regions from SNP 24663 to 25263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,465 DEBUG Processing 1056/1128 atomic regions from SNP 316769 to 317369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,483 DEBUG Processing 84/851 atomic regions from SNP 24963 to 25563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,738 DEBUG Processing 85/851 atomic regions from SNP 25263 to 25863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,771 DEBUG Processing 1057/1128 atomic regions from SNP 317069 to 317669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:38,989 DEBUG Processing 86/851 atomic regions from SNP 25563 to 26163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,066 DEBUG Processing 1058/1128 atomic regions from SNP 317369 to 317969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,236 DEBUG Processing 87/851 atomic regions from SNP 25863 to 26463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,358 DEBUG Processing 1059/1128 atomic regions from SNP 317669 to 318269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,483 DEBUG Processing 88/851 atomic regions from SNP 26163 to 26763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,647 DEBUG Processing 1060/1128 atomic regions from SNP 317969 to 318569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,735 DEBUG Processing 89/851 atomic regions from SNP 26463 to 27063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,933 DEBUG Processing 1061/1128 atomic regions from SNP 318269 to 318869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:39,989 DEBUG Processing 90/851 atomic regions from SNP 26763 to 27363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,233 DEBUG Processing 1062/1128 atomic regions from SNP 318569 to 319169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,248 DEBUG Processing 91/851 atomic regions from SNP 27063 to 27663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,507 DEBUG Processing 92/851 atomic regions from SNP 27363 to 27963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,537 DEBUG Processing 1063/1128 atomic regions from SNP 318869 to 319469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:40,770 DEBUG Processing 93/851 atomic regions from SNP 27663 to 28263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,869 DEBUG Processing 1064/1128 atomic regions from SNP 319169 to 319769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,031 DEBUG Processing 94/851 atomic regions from SNP 27963 to 28563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,206 DEBUG Processing 1065/1128 atomic regions from SNP 319469 to 320069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,286 DEBUG Processing 95/851 atomic regions from SNP 28263 to 28863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,522 DEBUG Processing 1066/1128 atomic regions from SNP 319769 to 320369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:41,545 DEBUG Processing 96/851 atomic regions from SNP 28563 to 29163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,800 DEBUG Processing 97/851 atomic regions from SNP 28863 to 29463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,837 DEBUG Processing 1067/1128 atomic regions from SNP 320069 to 320669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,050 DEBUG Processing 98/851 atomic regions from SNP 29163 to 29763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,167 DEBUG Processing 1068/1128 atomic regions from SNP 320369 to 320969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,299 DEBUG Processing 99/851 atomic regions from SNP 29463 to 30063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,493 DEBUG Processing 1069/1128 atomic regions from SNP 320669 to 321269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,548 DEBUG Processing 100/851 atomic regions from SNP 29763 to 30363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,794 DEBUG Processing 1070/1128 atomic regions from SNP 320969 to 321569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:42,797 DEBUG Processing 101/851 atomic regions from SNP 30063 to 30663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,055 DEBUG Processing 102/851 atomic regions from SNP 30363 to 30963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,093 DEBUG Processing 1071/1128 atomic regions from SNP 321269 to 321869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,312 DEBUG Processing 103/851 atomic regions from SNP 30663 to 31263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,389 DEBUG Processing 1072/1128 atomic regions from SNP 321569 to 322169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,561 DEBUG Processing 104/851 atomic regions from SNP 30963 to 31563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,689 DEBUG Processing 1073/1128 atomic regions from SNP 321869 to 322469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:43,812 DEBUG Processing 105/851 atomic regions from SNP 31263 to 31863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,987 DEBUG Processing 1074/1128 atomic regions from SNP 322169 to 322769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,062 DEBUG Processing 106/851 atomic regions from SNP 31563 to 32163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,284 DEBUG Processing 1075/1128 atomic regions from SNP 322469 to 323069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,313 DEBUG Processing 107/851 atomic regions from SNP 31863 to 32463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,565 DEBUG Processing 108/851 atomic regions from SNP 32163 to 32763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,576 DEBUG Processing 1076/1128 atomic regions from SNP 322769 to 323369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:44,825 DEBUG Processing 109/851 atomic regions from SNP 32463 to 33063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,876 DEBUG Processing 1077/1128 atomic regions from SNP 323069 to 323669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,072 DEBUG Processing 110/851 atomic regions from SNP 32763 to 33363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,173 DEBUG Processing 1078/1128 atomic regions from SNP 323369 to 323969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,321 DEBUG Processing 111/851 atomic regions from SNP 33063 to 33663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,465 DEBUG Processing 1079/1128 atomic regions from SNP 323669 to 324269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,576 DEBUG Processing 112/851 atomic regions from SNP 33363 to 33963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,752 DEBUG Processing 1080/1128 atomic regions from SNP 323969 to 324569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:45,834 DEBUG Processing 113/851 atomic regions from SNP 33663 to 34263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,047 DEBUG Processing 1081/1128 atomic regions from SNP 324269 to 324869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,093 DEBUG Processing 114/851 atomic regions from SNP 33963 to 34563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,349 DEBUG Processing 1082/1128 atomic regions from SNP 324569 to 325169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,350 DEBUG Processing 115/851 atomic regions from SNP 34263 to 34863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,609 DEBUG Processing 116/851 atomic regions from SNP 34563 to 35163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,652 DEBUG Processing 1083/1128 atomic regions from SNP 324869 to 325469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:46,865 DEBUG Processing 117/851 atomic regions from SNP 34863 to 35463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,944 DEBUG Processing 1084/1128 atomic regions from SNP 325169 to 325769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,117 DEBUG Processing 118/851 atomic regions from SNP 35163 to 35763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,241 DEBUG Processing 1085/1128 atomic regions from SNP 325469 to 326069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,374 DEBUG Processing 119/851 atomic regions from SNP 35463 to 36063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,540 DEBUG Processing 1086/1128 atomic regions from SNP 325769 to 326369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,620 DEBUG Processing 120/851 atomic regions from SNP 35763 to 36363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,832 DEBUG Processing 1087/1128 atomic regions from SNP 326069 to 326669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:47,861 DEBUG Processing 121/851 atomic regions from SNP 36063 to 36663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,114 DEBUG Processing 122/851 atomic regions from SNP 36363 to 36963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,123 DEBUG Processing 1088/1128 atomic regions from SNP 326369 to 326969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,366 DEBUG Processing 123/851 atomic regions from SNP 36663 to 37263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,415 DEBUG Processing 1089/1128 atomic regions from SNP 326669 to 327269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,621 DEBUG Processing 124/851 atomic regions from SNP 36963 to 37563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,713 DEBUG Processing 1090/1128 atomic regions from SNP 326969 to 327569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:48,874 DEBUG Processing 125/851 atomic regions from SNP 37263 to 37863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,008 DEBUG Processing 1091/1128 atomic regions from SNP 327269 to 327869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,123 DEBUG Processing 126/851 atomic regions from SNP 37563 to 38163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,304 DEBUG Processing 1092/1128 atomic regions from SNP 327569 to 328169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,371 DEBUG Processing 127/851 atomic regions from SNP 37863 to 38463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,588 DEBUG Processing 1093/1128 atomic regions from SNP 327869 to 328469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:49,614 DEBUG Processing 128/851 atomic regions from SNP 38163 to 38763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,857 DEBUG Processing 129/851 atomic regions from SNP 38463 to 39063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,876 DEBUG Processing 1094/1128 atomic regions from SNP 328169 to 328769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,100 DEBUG Processing 130/851 atomic regions from SNP 38763 to 39363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,172 DEBUG Processing 1095/1128 atomic regions from SNP 328469 to 329069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,343 DEBUG Processing 131/851 atomic regions from SNP 39063 to 39663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,478 DEBUG Processing 1096/1128 atomic regions from SNP 328769 to 329369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,583 DEBUG Processing 132/851 atomic regions from SNP 39363 to 39963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,769 DEBUG Processing 1097/1128 atomic regions from SNP 329069 to 329669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:50,823 DEBUG Processing 133/851 atomic regions from SNP 39663 to 40263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,044 DEBUG Processing 1098/1128 atomic regions from SNP 329369 to 329969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,060 DEBUG Processing 134/851 atomic regions from SNP 39963 to 40563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,307 DEBUG Processing 135/851 atomic regions from SNP 40263 to 40863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,330 DEBUG Processing 1099/1128 atomic regions from SNP 329669 to 330269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,555 DEBUG Processing 136/851 atomic regions from SNP 40563 to 41163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,616 DEBUG Processing 1100/1128 atomic regions from SNP 329969 to 330569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:51,798 DEBUG Processing 137/851 atomic regions from SNP 40863 to 41463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,895 DEBUG Processing 1101/1128 atomic regions from SNP 330269 to 330869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,046 DEBUG Processing 138/851 atomic regions from SNP 41163 to 41763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,204 DEBUG Processing 1102/1128 atomic regions from SNP 330569 to 331169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,291 DEBUG Processing 139/851 atomic regions from SNP 41463 to 42063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,523 DEBUG Processing 1103/1128 atomic regions from SNP 330869 to 331469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:52,529 DEBUG Processing 140/851 atomic regions from SNP 41763 to 42363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,770 DEBUG Processing 141/851 atomic regions from SNP 42063 to 42663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,841 DEBUG Processing 1104/1128 atomic regions from SNP 331169 to 331769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,014 DEBUG Processing 142/851 atomic regions from SNP 42363 to 42963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,163 DEBUG Processing 1105/1128 atomic regions from SNP 331469 to 332069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,268 DEBUG Processing 143/851 atomic regions from SNP 42663 to 43263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,476 DEBUG Processing 1106/1128 atomic regions from SNP 331769 to 332369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,533 DEBUG Processing 144/851 atomic regions from SNP 42963 to 43563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,795 DEBUG Processing 1107/1128 atomic regions from SNP 332069 to 332669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:53,799 DEBUG Processing 145/851 atomic regions from SNP 43263 to 43863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,056 DEBUG Processing 146/851 atomic regions from SNP 43563 to 44163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,102 DEBUG Processing 1108/1128 atomic regions from SNP 332369 to 332969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,327 DEBUG Processing 147/851 atomic regions from SNP 43863 to 44463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,438 DEBUG Processing 1109/1128 atomic regions from SNP 332669 to 333269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,586 DEBUG Processing 148/851 atomic regions from SNP 44163 to 44763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,782 DEBUG Processing 1110/1128 atomic regions from SNP 332969 to 333569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:54,878 DEBUG Processing 149/851 atomic regions from SNP 44463 to 45063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,088 DEBUG Processing 1111/1128 atomic regions from SNP 333269 to 333869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,167 DEBUG Processing 150/851 atomic regions from SNP 44763 to 45363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,394 DEBUG Processing 1112/1128 atomic regions from SNP 333569 to 334169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,459 DEBUG Processing 151/851 atomic regions from SNP 45063 to 45663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,700 DEBUG Processing 1113/1128 atomic regions from SNP 333869 to 334469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:55,750 DEBUG Processing 152/851 atomic regions from SNP 45363 to 45963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,014 DEBUG Processing 1114/1128 atomic regions from SNP 334169 to 334769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,033 DEBUG Processing 153/851 atomic regions from SNP 45663 to 46263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,297 DEBUG Processing 154/851 atomic regions from SNP 45963 to 46563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,305 DEBUG Processing 1115/1128 atomic regions from SNP 334469 to 335069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,580 DEBUG Processing 155/851 atomic regions from SNP 46263 to 46863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,639 DEBUG Processing 1116/1128 atomic regions from SNP 334769 to 335369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:56,869 DEBUG Processing 156/851 atomic regions from SNP 46563 to 47163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,951 DEBUG Processing 1117/1128 atomic regions from SNP 335069 to 335669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,146 DEBUG Processing 157/851 atomic regions from SNP 46863 to 47463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,237 DEBUG Processing 1118/1128 atomic regions from SNP 335369 to 335969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,406 DEBUG Processing 158/851 atomic regions from SNP 47163 to 47763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,530 DEBUG Processing 1119/1128 atomic regions from SNP 335669 to 336269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,652 DEBUG Processing 159/851 atomic regions from SNP 47463 to 48063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,866 DEBUG Processing 1120/1128 atomic regions from SNP 335969 to 336569 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:57,925 DEBUG Processing 160/851 atomic regions from SNP 47763 to 48363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,169 DEBUG Processing 1121/1128 atomic regions from SNP 336269 to 336869 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,216 DEBUG Processing 161/851 atomic regions from SNP 48063 to 48663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,464 DEBUG Processing 1122/1128 atomic regions from SNP 336569 to 337169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,496 DEBUG Processing 162/851 atomic regions from SNP 48363 to 48963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,766 DEBUG Processing 1123/1128 atomic regions from SNP 336869 to 337469 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:58,767 DEBUG Processing 163/851 atomic regions from SNP 48663 to 49263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,046 DEBUG Processing 164/851 atomic regions from SNP 48963 to 49563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,057 DEBUG Processing 1124/1128 atomic regions from SNP 337169 to 337769 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,306 DEBUG Processing 165/851 atomic regions from SNP 49263 to 49863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,375 DEBUG Processing 1125/1128 atomic regions from SNP 337469 to 338069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,564 DEBUG Processing 166/851 atomic regions from SNP 49563 to 50163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,694 DEBUG Processing 1126/1128 atomic regions from SNP 337769 to 338369 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:59,814 DEBUG Processing 167/851 atomic regions from SNP 49863 to 50463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,986 DEBUG Processing 1127/1128 atomic regions from SNP 338069 to 338669 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,075 DEBUG Processing 168/851 atomic regions from SNP 50163 to 50763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,297 DEBUG Processing 1128/1128 atomic regions from SNP 338369 to 338969 for chr1 (subchromosome 1 of 1). 2025-01-31 09:50:00,335 DEBUG Processing 169/851 atomic regions from SNP 50463 to 51063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,452 DEBUG Unique SNPs positions in subchromosome 1: 338970 2025-01-31 09:50:00,595 DEBUG Processing 170/851 atomic regions from SNP 50763 to 51363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,831 DEBUG Processing 171/851 atomic regions from SNP 51063 to 51663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,060 DEBUG Processing 172/851 atomic regions from SNP 51363 to 51963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,294 DEBUG Processing 173/851 atomic regions from SNP 51663 to 52263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,538 DEBUG Processing 174/851 atomic regions from SNP 51963 to 52563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,781 DEBUG Processing 175/851 atomic regions from SNP 52263 to 52863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,008 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:50:02,037 DEBUG Processing 176/851 atomic regions from SNP 52563 to 53163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,284 DEBUG Processing 177/851 atomic regions from SNP 52863 to 53463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,525 DEBUG Processing 178/851 atomic regions from SNP 53163 to 53763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,758 DEBUG Processing 179/851 atomic regions from SNP 53463 to 54063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,994 DEBUG Processing 180/851 atomic regions from SNP 53763 to 54363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,244 DEBUG Processing 181/851 atomic regions from SNP 54063 to 54663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,493 DEBUG Processing 182/851 atomic regions from SNP 54363 to 54963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,723 DEBUG Processing 183/851 atomic regions from SNP 54663 to 55263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,978 DEBUG Processing 184/851 atomic regions from SNP 54963 to 55563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,224 DEBUG Processing 185/851 atomic regions from SNP 55263 to 55863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,475 DEBUG Processing 186/851 atomic regions from SNP 55563 to 56163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,733 DEBUG Processing 187/851 atomic regions from SNP 55863 to 56463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,967 DEBUG Processing 188/851 atomic regions from SNP 56163 to 56763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,201 DEBUG Processing 189/851 atomic regions from SNP 56463 to 57063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,433 DEBUG Processing 190/851 atomic regions from SNP 56763 to 57363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,665 DEBUG Processing 191/851 atomic regions from SNP 57063 to 57663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,896 DEBUG Processing 192/851 atomic regions from SNP 57363 to 57963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,124 DEBUG Processing 193/851 atomic regions from SNP 57663 to 58263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,361 DEBUG Processing 194/851 atomic regions from SNP 57963 to 58563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,595 DEBUG Processing 195/851 atomic regions from SNP 58263 to 58863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,831 DEBUG Processing 196/851 atomic regions from SNP 58563 to 59163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,064 DEBUG Processing 197/851 atomic regions from SNP 58863 to 59463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,297 DEBUG Processing 198/851 atomic regions from SNP 59163 to 59763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,533 DEBUG Processing 199/851 atomic regions from SNP 59463 to 60063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,773 DEBUG Processing 200/851 atomic regions from SNP 59763 to 60363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,023 DEBUG Processing 201/851 atomic regions from SNP 60063 to 60663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,275 DEBUG Processing 202/851 atomic regions from SNP 60363 to 60963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,515 DEBUG Processing 203/851 atomic regions from SNP 60663 to 61263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,777 DEBUG Processing 204/851 atomic regions from SNP 60963 to 61563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,048 DEBUG Processing 205/851 atomic regions from SNP 61263 to 61863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,314 DEBUG Processing 206/851 atomic regions from SNP 61563 to 62163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,572 DEBUG Processing 207/851 atomic regions from SNP 61863 to 62463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,853 DEBUG Processing 208/851 atomic regions from SNP 62163 to 62763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,107 DEBUG Processing 209/851 atomic regions from SNP 62463 to 63063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,375 DEBUG Processing 210/851 atomic regions from SNP 62763 to 63363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,624 DEBUG Processing 211/851 atomic regions from SNP 63063 to 63663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,883 DEBUG Processing 212/851 atomic regions from SNP 63363 to 63963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,146 DEBUG Processing 213/851 atomic regions from SNP 63663 to 64263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,384 DEBUG Processing 214/851 atomic regions from SNP 63963 to 64563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,610 DEBUG Processing 215/851 atomic regions from SNP 64263 to 64863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,848 DEBUG Processing 216/851 atomic regions from SNP 64563 to 65163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,080 DEBUG Processing 217/851 atomic regions from SNP 64863 to 65463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,314 DEBUG Processing 218/851 atomic regions from SNP 65163 to 65763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,547 DEBUG Processing 219/851 atomic regions from SNP 65463 to 66063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,781 DEBUG Processing 220/851 atomic regions from SNP 65763 to 66363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,008 DEBUG Processing 221/851 atomic regions from SNP 66063 to 66663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,237 DEBUG Processing 222/851 atomic regions from SNP 66363 to 66963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,461 DEBUG Processing 223/851 atomic regions from SNP 66663 to 67263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,684 DEBUG Processing 224/851 atomic regions from SNP 66963 to 67563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,913 DEBUG Processing 225/851 atomic regions from SNP 67263 to 67863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,149 DEBUG Processing 226/851 atomic regions from SNP 67563 to 68163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,382 DEBUG Processing 227/851 atomic regions from SNP 67863 to 68463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,518 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:50:14,616 DEBUG Processing 228/851 atomic regions from SNP 68163 to 68763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,853 DEBUG Processing 229/851 atomic regions from SNP 68463 to 69063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,093 DEBUG Processing 230/851 atomic regions from SNP 68763 to 69363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,333 DEBUG Processing 231/851 atomic regions from SNP 69063 to 69663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,446 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:50:15,566 DEBUG Processing 232/851 atomic regions from SNP 69363 to 69963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,799 DEBUG Processing 233/851 atomic regions from SNP 69663 to 70263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,028 DEBUG Processing 234/851 atomic regions from SNP 69963 to 70563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,261 DEBUG Processing 235/851 atomic regions from SNP 70263 to 70863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,496 DEBUG Processing 236/851 atomic regions from SNP 70563 to 71163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,755 DEBUG Processing 237/851 atomic regions from SNP 70863 to 71463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,985 DEBUG Processing 238/851 atomic regions from SNP 71163 to 71763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,217 DEBUG Processing 239/851 atomic regions from SNP 71463 to 72063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,457 DEBUG Processing 240/851 atomic regions from SNP 71763 to 72363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,694 DEBUG Processing 241/851 atomic regions from SNP 72063 to 72663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,924 DEBUG Processing 242/851 atomic regions from SNP 72363 to 72963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,157 DEBUG Processing 243/851 atomic regions from SNP 72663 to 73263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,387 DEBUG Processing 244/851 atomic regions from SNP 72963 to 73563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,620 DEBUG Processing 245/851 atomic regions from SNP 73263 to 73863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,859 DEBUG Processing 246/851 atomic regions from SNP 73563 to 74163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,091 DEBUG Processing 247/851 atomic regions from SNP 73863 to 74463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,325 DEBUG Processing 248/851 atomic regions from SNP 74163 to 74763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,554 DEBUG Processing 249/851 atomic regions from SNP 74463 to 75063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,778 DEBUG Processing 250/851 atomic regions from SNP 74763 to 75363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,004 DEBUG Processing 251/851 atomic regions from SNP 75063 to 75663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,231 DEBUG Processing 252/851 atomic regions from SNP 75363 to 75963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,459 DEBUG Processing 253/851 atomic regions from SNP 75663 to 76263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,689 DEBUG Processing 254/851 atomic regions from SNP 75963 to 76563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,918 DEBUG Processing 255/851 atomic regions from SNP 76263 to 76863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,162 DEBUG Processing 256/851 atomic regions from SNP 76563 to 77163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,388 DEBUG Processing 257/851 atomic regions from SNP 76863 to 77463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,636 DEBUG Processing 258/851 atomic regions from SNP 77163 to 77763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,896 DEBUG Processing 259/851 atomic regions from SNP 77463 to 78063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,142 DEBUG Processing 260/851 atomic regions from SNP 77763 to 78363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,379 DEBUG Processing 261/851 atomic regions from SNP 78063 to 78663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,613 DEBUG Processing 262/851 atomic regions from SNP 78363 to 78963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,850 DEBUG Processing 263/851 atomic regions from SNP 78663 to 79263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,078 DEBUG Processing 264/851 atomic regions from SNP 78963 to 79563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,312 DEBUG Processing 265/851 atomic regions from SNP 79263 to 79863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,558 DEBUG Processing 266/851 atomic regions from SNP 79563 to 80163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,838 DEBUG Processing 267/851 atomic regions from SNP 79863 to 80463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,083 DEBUG Processing 268/851 atomic regions from SNP 80163 to 80763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,314 DEBUG Processing 269/851 atomic regions from SNP 80463 to 81063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,543 DEBUG Processing 270/851 atomic regions from SNP 80763 to 81363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,772 DEBUG Processing 271/851 atomic regions from SNP 81063 to 81663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,996 DEBUG Processing 272/851 atomic regions from SNP 81363 to 81963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,229 DEBUG Processing 273/851 atomic regions from SNP 81663 to 82263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,456 DEBUG Processing 274/851 atomic regions from SNP 81963 to 82563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,687 DEBUG Processing 275/851 atomic regions from SNP 82263 to 82863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,925 DEBUG Processing 276/851 atomic regions from SNP 82563 to 83163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,161 DEBUG Processing 277/851 atomic regions from SNP 82863 to 83463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,394 DEBUG Processing 278/851 atomic regions from SNP 83163 to 83763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,625 DEBUG Processing 279/851 atomic regions from SNP 83463 to 84063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,862 DEBUG Processing 280/851 atomic regions from SNP 83763 to 84363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,114 DEBUG Processing 281/851 atomic regions from SNP 84063 to 84663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,348 DEBUG Processing 282/851 atomic regions from SNP 84363 to 84963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,582 DEBUG Processing 283/851 atomic regions from SNP 84663 to 85263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,817 DEBUG Processing 284/851 atomic regions from SNP 84963 to 85563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,047 DEBUG Processing 285/851 atomic regions from SNP 85263 to 85863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,103 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:50:28,105 DEBUG chr7: Signal quantile: 0.986. signal threshold: 14. Best RMSEA: 0.008 2025-01-31 09:50:28,279 DEBUG Processing 286/851 atomic regions from SNP 85563 to 86163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,427 DEBUG Subchromosome time: 383.33327582105994, subchromosome SNPs: 305619 2025-01-31 09:50:28,430 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:28,513 DEBUG Processing 287/851 atomic regions from SNP 85863 to 86463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,755 DEBUG Processing 288/851 atomic regions from SNP 86163 to 86763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,998 DEBUG Processing 289/851 atomic regions from SNP 86463 to 87063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,231 DEBUG Processing 290/851 atomic regions from SNP 86763 to 87363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,403 DEBUG Segmenting atomic regions: 2025-01-31 09:50:29,479 DEBUG Processing 291/851 atomic regions from SNP 87063 to 87663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,544 DEBUG Processing 1/25 atomic regions from SNP 0 to 602 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:29,713 DEBUG Processing 292/851 atomic regions from SNP 87363 to 87963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,806 DEBUG Processing 2/25 atomic regions from SNP 302 to 904 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:29,949 DEBUG Processing 293/851 atomic regions from SNP 87663 to 88263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,067 DEBUG Processing 3/25 atomic regions from SNP 604 to 1206 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:30,185 DEBUG Processing 294/851 atomic regions from SNP 87963 to 88563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,329 DEBUG Processing 4/25 atomic regions from SNP 906 to 1508 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:30,427 DEBUG Processing 295/851 atomic regions from SNP 88263 to 88863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,608 DEBUG Processing 5/25 atomic regions from SNP 1208 to 1810 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:30,664 DEBUG Processing 296/851 atomic regions from SNP 88563 to 89163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,838 DEBUG chr7 total SNP count: 230749 2025-01-31 09:50:30,838 DEBUG chr7 length: 145441459 2025-01-31 09:50:30,838 DEBUG ----------------------------------------- 2025-01-31 09:50:30,838 INFO Processing SNPs in chr7 2025-01-31 09:50:30,874 DEBUG Processing 6/25 atomic regions from SNP 1510 to 2112 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:30,903 DEBUG Processing 297/851 atomic regions from SNP 88863 to 89463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,133 DEBUG Processing 7/25 atomic regions from SNP 1812 to 2414 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:31,135 DEBUG Processing 298/851 atomic regions from SNP 89163 to 89763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,200 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20713), (20713, 20718), (20718, 230749)] 2025-01-31 09:50:31,200 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:50:31,202 DEBUG chr10: Signal quantile: 0.987. signal threshold: 11. Best RMSEA: 0.010 2025-01-31 09:50:31,304 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:31,367 DEBUG Processing 299/851 atomic regions from SNP 89463 to 90063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,394 DEBUG Processing 8/25 atomic regions from SNP 2114 to 2716 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:31,632 DEBUG Processing 300/851 atomic regions from SNP 89763 to 90363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,656 DEBUG Processing 9/25 atomic regions from SNP 2416 to 3018 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:31,907 DEBUG Processing 301/851 atomic regions from SNP 90063 to 90663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,929 DEBUG Processing 10/25 atomic regions from SNP 2718 to 3320 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:32,173 DEBUG Processing 302/851 atomic regions from SNP 90363 to 90963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,198 DEBUG Processing 11/25 atomic regions from SNP 3020 to 3622 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:32,437 DEBUG Processing 303/851 atomic regions from SNP 90663 to 91263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,477 DEBUG Processing 12/25 atomic regions from SNP 3322 to 3924 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:32,740 DEBUG Processing 304/851 atomic regions from SNP 90963 to 91563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,853 DEBUG Processing 13/25 atomic regions from SNP 3624 to 4226 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:32,986 DEBUG Processing 305/851 atomic regions from SNP 91263 to 91863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,195 DEBUG Processing 14/25 atomic regions from SNP 3926 to 4528 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:33,239 DEBUG Processing 306/851 atomic regions from SNP 91563 to 92163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,248 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:50:33,250 DEBUG chr8: Signal quantile: 0.988. signal threshold: 14. Best RMSEA: 0.011 2025-01-31 09:50:33,478 DEBUG Processing 307/851 atomic regions from SNP 91863 to 92463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,528 DEBUG Processing 15/25 atomic regions from SNP 4228 to 4830 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:33,716 DEBUG Processing 308/851 atomic regions from SNP 92163 to 92763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,830 DEBUG Segmenting atomic regions: 2025-01-31 09:50:33,837 DEBUG Processing 16/25 atomic regions from SNP 4530 to 5131 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:33,864 DEBUG chr10 total SNP count: 223026 2025-01-31 09:50:33,864 DEBUG chr10 length: 130694993 2025-01-31 09:50:33,864 DEBUG ----------------------------------------- 2025-01-31 09:50:33,864 INFO Processing SNPs in chr10 2025-01-31 09:50:33,932 DEBUG Processing 1/68 atomic regions from SNP 0 to 601 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:33,959 DEBUG Processing 309/851 atomic regions from SNP 92463 to 93063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,089 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 223026)] 2025-01-31 09:50:34,128 DEBUG Processing 17/25 atomic regions from SNP 4831 to 5432 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:34,148 DEBUG Processing 2/68 atomic regions from SNP 301 to 902 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,197 DEBUG Processing 310/851 atomic regions from SNP 92763 to 93363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,242 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:34,367 DEBUG Processing 3/68 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,422 DEBUG Processing 18/25 atomic regions from SNP 5132 to 5733 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:34,440 DEBUG Processing 311/851 atomic regions from SNP 93063 to 93663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,621 DEBUG Processing 4/68 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,686 DEBUG Processing 312/851 atomic regions from SNP 93363 to 93963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,726 DEBUG Processing 19/25 atomic regions from SNP 5433 to 6034 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:34,858 DEBUG Processing 5/68 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:34,944 DEBUG Processing 313/851 atomic regions from SNP 93663 to 94263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,031 DEBUG Processing 20/25 atomic regions from SNP 5734 to 6335 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:35,098 DEBUG Processing 6/68 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,208 DEBUG Processing 314/851 atomic regions from SNP 93963 to 94563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,322 DEBUG Processing 7/68 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,326 DEBUG Processing 21/25 atomic regions from SNP 6035 to 6636 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:35,456 DEBUG Processing 315/851 atomic regions from SNP 94263 to 94863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,573 DEBUG Processing 8/68 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,596 DEBUG chr8 total SNP count: 219006 2025-01-31 09:50:35,597 DEBUG chr8 length: 129401213 2025-01-31 09:50:35,597 DEBUG ----------------------------------------- 2025-01-31 09:50:35,597 INFO Processing SNPs in chr8 2025-01-31 09:50:35,616 DEBUG Processing 22/25 atomic regions from SNP 6336 to 6937 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:35,702 DEBUG Processing 316/851 atomic regions from SNP 94563 to 95163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,818 DEBUG Processing 9/68 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:35,819 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219006)] 2025-01-31 09:50:35,903 DEBUG Processing 23/25 atomic regions from SNP 6637 to 7238 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:35,934 DEBUG Processing 317/851 atomic regions from SNP 94863 to 95463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,981 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:36,064 DEBUG Processing 10/68 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,184 DEBUG Processing 318/851 atomic regions from SNP 95163 to 95763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,205 DEBUG Processing 24/25 atomic regions from SNP 6938 to 7539 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:36,305 DEBUG Processing 11/68 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,433 DEBUG Processing 319/851 atomic regions from SNP 95463 to 96063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,501 DEBUG Processing 25/25 atomic regions from SNP 7239 to 7840 for chr2 (subchromosome 2 of 2). 2025-01-31 09:50:36,522 DEBUG Processing 12/68 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,641 DEBUG Unique SNPs positions in subchromosome 2: 7841 2025-01-31 09:50:36,651 DEBUG Subchromosome time: 8.220920306979679, subchromosome SNPs: 7841 2025-01-31 09:50:36,652 DEBUG Estimated BADs: [1.72, 0.34, 1.72, 0.57, 12.04, 1.72, 5.16, 0.34, 3.44, 0.34, 1.72, 0.25, 0.86, 0.34, 1.72, 0.86, 0.29, 1.72, 3.44, 1.72, 0.86, 8.60, 0.21, 1.72, 3.44, 0.25, 1.72, 0.86, 1.72, 0.57, 1.72, 6.88, 3.44, 0.34, 1.72, 3.44, 1.72, 0.34, 0.86, 3.44, 0.86, 3.44, 0.57, 1.72, 5.16, 1.72, 1.72, 6.88] SNP counts: [7922, 3314, 10513, 4497, 146, 11639, 21447, 1105, 4386, 8246, 2997, 3293, 9898, 5113, 8097, 9282, 2718, 3378, 6902, 13773, 5980, 1173, 6878, 1843, 7153, 9898, 9318, 10260, 4445, 3266, 3867, 1266, 6599, 2386, 5183, 9601, 8931, 3601, 8229, 1746, 10789, 14951, 2577, 4914, 8995, 13104, 3709, 4132] SNP IDs counts: [7922, 3314, 10513, 4497, 146, 11639, 21447, 1105, 4386, 8246, 2997, 3293, 9898, 5113, 8097, 9282, 2718, 3378, 6902, 13773, 5980, 1173, 6878, 1843, 7153, 9898, 9318, 10260, 4445, 3266, 3867, 1266, 6599, 2386, 5183, 9601, 8931, 3601, 8229, 1746, 10789, 14951, 2577, 4914, 8995, 13104, 3709, 4132] Critical gap: 728255bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.38Mbp, 9.37Mbp, 15.35Mbp, 18.02Mbp, 18.10Mbp, 24.92Mbp, 36.25Mbp, 36.95Mbp, 39.37Mbp, 44.24Mbp, 45.85Mbp, 47.86Mbp, 53.30Mbp, 56.54Mbp, 61.10Mbp, 66.36Mbp, 67.92Mbp, 69.79Mbp, 73.43Mbp, 80.95Mbp, 84.65Mbp, 85.28Mbp, 89.57Mbp, 90.85Mbp, 94.62Mbp, 101.16Mbp, 106.18Mbp, 112.24Mbp, 114.71Mbp, 116.56Mbp, 118.64Mbp, 119.30Mbp, 122.87Mbp, 124.28Mbp, 127.12Mbp, 132.25Mbp, 137.19Mbp, 139.26Mbp, 143.86Mbp, 144.79Mbp, 150.90Mbp, 159.16Mbp, 160.58Mbp, 163.25Mbp, 168.04Mbp, 175.18Mbp[1.52Mbp], 179.80Mbp, 182.11Mbp] 2025-01-31 09:50:36,652 DEBUG chr2 time: 8.221553254057653 s 2025-01-31 09:50:36,660 DEBUG Processing 320/851 atomic regions from SNP 95763 to 96363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,734 DEBUG Processing 13/68 atomic regions from SNP 3612 to 4212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:36,865 DEBUG chr2: Fitting background model for 48 segments 2025-01-31 09:50:36,891 DEBUG Processing 321/851 atomic regions from SNP 96063 to 96663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,946 DEBUG Processing 14/68 atomic regions from SNP 3912 to 4512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,127 DEBUG Processing 322/851 atomic regions from SNP 96363 to 96963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,163 DEBUG Processing 15/68 atomic regions from SNP 4212 to 4812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,360 DEBUG Processing 323/851 atomic regions from SNP 96663 to 97263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,397 DEBUG Processing 16/68 atomic regions from SNP 4512 to 5112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,592 DEBUG Processing 324/851 atomic regions from SNP 96963 to 97563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,649 DEBUG Processing 17/68 atomic regions from SNP 4812 to 5412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:37,819 DEBUG Processing 325/851 atomic regions from SNP 97263 to 97863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,895 DEBUG Processing 18/68 atomic regions from SNP 5112 to 5712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:38,047 DEBUG Processing 326/851 atomic regions from SNP 97563 to 98163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,134 DEBUG Processing 19/68 atomic regions from SNP 5412 to 6012 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:38,276 DEBUG Processing 327/851 atomic regions from SNP 97863 to 98463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,380 DEBUG Processing 20/68 atomic regions from SNP 5712 to 6312 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:38,509 DEBUG Processing 328/851 atomic regions from SNP 98163 to 98763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,603 DEBUG Processing 21/68 atomic regions from SNP 6012 to 6612 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:38,733 DEBUG Processing 329/851 atomic regions from SNP 98463 to 99063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,819 DEBUG Processing 22/68 atomic regions from SNP 6312 to 6912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:38,959 DEBUG Processing 330/851 atomic regions from SNP 98763 to 99363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,037 DEBUG Processing 23/68 atomic regions from SNP 6612 to 7212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:39,184 DEBUG Processing 331/851 atomic regions from SNP 99063 to 99663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,257 DEBUG Processing 24/68 atomic regions from SNP 6912 to 7512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:39,408 DEBUG Processing 332/851 atomic regions from SNP 99363 to 99963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,478 DEBUG Processing 25/68 atomic regions from SNP 7212 to 7812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:39,634 DEBUG Processing 333/851 atomic regions from SNP 99663 to 100263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,695 DEBUG Processing 26/68 atomic regions from SNP 7512 to 8112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:39,863 DEBUG Processing 334/851 atomic regions from SNP 99963 to 100563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,912 DEBUG Processing 27/68 atomic regions from SNP 7812 to 8412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:40,101 DEBUG Processing 335/851 atomic regions from SNP 100263 to 100863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,131 DEBUG Processing 28/68 atomic regions from SNP 8112 to 8712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:40,331 DEBUG Processing 336/851 atomic regions from SNP 100563 to 101163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,347 DEBUG Processing 29/68 atomic regions from SNP 8412 to 9012 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:40,562 DEBUG Processing 337/851 atomic regions from SNP 100863 to 101463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,565 DEBUG Processing 30/68 atomic regions from SNP 8712 to 9312 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:40,780 DEBUG Processing 31/68 atomic regions from SNP 9012 to 9612 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:40,797 DEBUG Processing 338/851 atomic regions from SNP 101163 to 101763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,002 DEBUG Processing 32/68 atomic regions from SNP 9312 to 9912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:41,038 DEBUG Processing 339/851 atomic regions from SNP 101463 to 102063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,218 DEBUG Processing 33/68 atomic regions from SNP 9612 to 10212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:41,275 DEBUG Processing 340/851 atomic regions from SNP 101763 to 102363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,433 DEBUG Processing 34/68 atomic regions from SNP 9912 to 10512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:41,509 DEBUG Processing 341/851 atomic regions from SNP 102063 to 102663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,647 DEBUG Processing 35/68 atomic regions from SNP 10212 to 10812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:41,741 DEBUG Processing 342/851 atomic regions from SNP 102363 to 102963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,892 DEBUG Processing 36/68 atomic regions from SNP 10512 to 11112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:41,979 DEBUG Processing 343/851 atomic regions from SNP 102663 to 103263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,138 DEBUG Processing 37/68 atomic regions from SNP 10812 to 11412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:42,220 DEBUG Processing 344/851 atomic regions from SNP 102963 to 103563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,363 DEBUG Processing 38/68 atomic regions from SNP 11112 to 11712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:42,461 DEBUG Processing 345/851 atomic regions from SNP 103263 to 103863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,580 DEBUG Processing 39/68 atomic regions from SNP 11412 to 12012 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:42,693 DEBUG Processing 346/851 atomic regions from SNP 103563 to 104163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,795 DEBUG Processing 40/68 atomic regions from SNP 11712 to 12312 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:42,925 DEBUG Processing 347/851 atomic regions from SNP 103863 to 104463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,008 DEBUG Processing 41/68 atomic regions from SNP 12012 to 12612 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:43,164 DEBUG Processing 348/851 atomic regions from SNP 104163 to 104763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,224 DEBUG Processing 42/68 atomic regions from SNP 12312 to 12912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:43,404 DEBUG Processing 349/851 atomic regions from SNP 104463 to 105063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,444 DEBUG Processing 43/68 atomic regions from SNP 12612 to 13212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:43,641 DEBUG Processing 350/851 atomic regions from SNP 104763 to 105363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,660 DEBUG Processing 44/68 atomic regions from SNP 12912 to 13512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:43,877 DEBUG Processing 351/851 atomic regions from SNP 105063 to 105663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,878 DEBUG Processing 45/68 atomic regions from SNP 13212 to 13812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:44,098 DEBUG Processing 46/68 atomic regions from SNP 13512 to 14112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:44,116 DEBUG Processing 352/851 atomic regions from SNP 105363 to 105963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,322 DEBUG Processing 47/68 atomic regions from SNP 13812 to 14412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:44,352 DEBUG Processing 353/851 atomic regions from SNP 105663 to 106263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,578 DEBUG Processing 48/68 atomic regions from SNP 14112 to 14712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:44,589 DEBUG Processing 354/851 atomic regions from SNP 105963 to 106563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,821 DEBUG Processing 355/851 atomic regions from SNP 106263 to 106863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,823 DEBUG Processing 49/68 atomic regions from SNP 14412 to 15012 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:45,053 DEBUG Processing 356/851 atomic regions from SNP 106563 to 107163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,071 DEBUG Processing 50/68 atomic regions from SNP 14712 to 15312 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:45,297 DEBUG Processing 357/851 atomic regions from SNP 106863 to 107463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,328 DEBUG Processing 51/68 atomic regions from SNP 15012 to 15612 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:45,538 DEBUG Processing 358/851 atomic regions from SNP 107163 to 107763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,559 DEBUG Processing 52/68 atomic regions from SNP 15312 to 15912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:45,777 DEBUG Processing 359/851 atomic regions from SNP 107463 to 108063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,797 DEBUG Processing 53/68 atomic regions from SNP 15612 to 16212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:46,010 DEBUG Processing 360/851 atomic regions from SNP 107763 to 108363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,045 DEBUG Processing 54/68 atomic regions from SNP 15912 to 16512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:46,240 DEBUG Processing 361/851 atomic regions from SNP 108063 to 108663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,272 DEBUG Processing 55/68 atomic regions from SNP 16212 to 16812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:46,476 DEBUG Processing 362/851 atomic regions from SNP 108363 to 108963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,493 DEBUG Processing 56/68 atomic regions from SNP 16512 to 17112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:46,710 DEBUG Processing 363/851 atomic regions from SNP 108663 to 109263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,711 DEBUG Processing 57/68 atomic regions from SNP 16812 to 17412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:46,933 DEBUG Processing 58/68 atomic regions from SNP 17112 to 17712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:46,947 DEBUG Processing 364/851 atomic regions from SNP 108963 to 109563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,150 DEBUG Processing 59/68 atomic regions from SNP 17412 to 18012 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:47,183 DEBUG Processing 365/851 atomic regions from SNP 109263 to 109863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,370 DEBUG Processing 60/68 atomic regions from SNP 17712 to 18312 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:47,418 DEBUG Processing 366/851 atomic regions from SNP 109563 to 110163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,587 DEBUG Processing 61/68 atomic regions from SNP 18012 to 18612 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:47,654 DEBUG Processing 367/851 atomic regions from SNP 109863 to 110463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,804 DEBUG Processing 62/68 atomic regions from SNP 18312 to 18912 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:47,894 DEBUG Processing 368/851 atomic regions from SNP 110163 to 110763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,040 DEBUG Processing 63/68 atomic regions from SNP 18612 to 19212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:48,132 DEBUG Processing 369/851 atomic regions from SNP 110463 to 111063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,293 DEBUG Processing 64/68 atomic regions from SNP 18912 to 19512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:48,386 DEBUG Processing 370/851 atomic regions from SNP 110763 to 111363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,544 DEBUG Processing 65/68 atomic regions from SNP 19212 to 19812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:48,650 DEBUG Processing 371/851 atomic regions from SNP 111063 to 111663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,794 DEBUG Processing 66/68 atomic regions from SNP 19512 to 20112 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:48,899 DEBUG Processing 372/851 atomic regions from SNP 111363 to 111963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,045 DEBUG Processing 67/68 atomic regions from SNP 19812 to 20412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:49,131 DEBUG Processing 373/851 atomic regions from SNP 111663 to 112263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,282 DEBUG Processing 68/68 atomic regions from SNP 20112 to 20712 for chr7 (subchromosome 1 of 3). 2025-01-31 09:50:49,365 DEBUG Processing 374/851 atomic regions from SNP 111963 to 112563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,396 DEBUG Unique SNPs positions in subchromosome 1: 20713 2025-01-31 09:50:49,469 DEBUG Subchromosome time: 18.16540036594961, subchromosome SNPs: 20713 2025-01-31 09:50:49,524 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:50:49,599 DEBUG Processing 375/851 atomic regions from SNP 112263 to 112863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,833 DEBUG Processing 376/851 atomic regions from SNP 112563 to 113163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,064 DEBUG Processing 377/851 atomic regions from SNP 112863 to 113463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,296 DEBUG Processing 378/851 atomic regions from SNP 113163 to 113763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,530 DEBUG Processing 379/851 atomic regions from SNP 113463 to 114063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,761 DEBUG Processing 380/851 atomic regions from SNP 113763 to 114363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,993 DEBUG Processing 381/851 atomic regions from SNP 114063 to 114663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,229 DEBUG Processing 382/851 atomic regions from SNP 114363 to 114963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,465 DEBUG Processing 383/851 atomic regions from SNP 114663 to 115263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,699 DEBUG Processing 384/851 atomic regions from SNP 114963 to 115563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,926 DEBUG Processing 385/851 atomic regions from SNP 115263 to 115863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,159 DEBUG Processing 386/851 atomic regions from SNP 115563 to 116163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,388 DEBUG Processing 387/851 atomic regions from SNP 115863 to 116463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,619 DEBUG Processing 388/851 atomic regions from SNP 116163 to 116763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,870 DEBUG Processing 389/851 atomic regions from SNP 116463 to 117063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,125 DEBUG Processing 390/851 atomic regions from SNP 116763 to 117363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,365 DEBUG Processing 391/851 atomic regions from SNP 117063 to 117663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,611 DEBUG Processing 392/851 atomic regions from SNP 117363 to 117963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,847 DEBUG Processing 393/851 atomic regions from SNP 117663 to 118263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,095 DEBUG Processing 394/851 atomic regions from SNP 117963 to 118563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,348 DEBUG Processing 395/851 atomic regions from SNP 118263 to 118863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,602 DEBUG Processing 396/851 atomic regions from SNP 118563 to 119163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,850 DEBUG Processing 397/851 atomic regions from SNP 118863 to 119463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,113 DEBUG Processing 398/851 atomic regions from SNP 119163 to 119763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,378 DEBUG Processing 399/851 atomic regions from SNP 119463 to 120063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,647 DEBUG Processing 400/851 atomic regions from SNP 119763 to 120363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,908 DEBUG Processing 401/851 atomic regions from SNP 120063 to 120663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,154 DEBUG Processing 402/851 atomic regions from SNP 120363 to 120963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,401 DEBUG Processing 403/851 atomic regions from SNP 120663 to 121263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,638 DEBUG Processing 404/851 atomic regions from SNP 120963 to 121563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,895 DEBUG Processing 405/851 atomic regions from SNP 121263 to 121863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,125 DEBUG Processing 406/851 atomic regions from SNP 121563 to 122163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,357 DEBUG Processing 407/851 atomic regions from SNP 121863 to 122463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,591 DEBUG Processing 408/851 atomic regions from SNP 122163 to 122763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,830 DEBUG Processing 409/851 atomic regions from SNP 122463 to 123063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,063 DEBUG Processing 410/851 atomic regions from SNP 122763 to 123363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,291 DEBUG Processing 411/851 atomic regions from SNP 123063 to 123663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,521 DEBUG Processing 412/851 atomic regions from SNP 123363 to 123963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,756 DEBUG Processing 413/851 atomic regions from SNP 123663 to 124263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,988 DEBUG Processing 414/851 atomic regions from SNP 123963 to 124563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,214 DEBUG Processing 415/851 atomic regions from SNP 124263 to 124863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,442 DEBUG Processing 416/851 atomic regions from SNP 124563 to 125163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,666 DEBUG Processing 417/851 atomic regions from SNP 124863 to 125463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,895 DEBUG Processing 418/851 atomic regions from SNP 125163 to 125763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,130 DEBUG Processing 419/851 atomic regions from SNP 125463 to 126063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,361 DEBUG Processing 420/851 atomic regions from SNP 125763 to 126363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,592 DEBUG Processing 421/851 atomic regions from SNP 126063 to 126663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,827 DEBUG Processing 422/851 atomic regions from SNP 126363 to 126963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,061 DEBUG Processing 423/851 atomic regions from SNP 126663 to 127263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,254 DEBUG Subchromosome time: 427.26171744498424, subchromosome SNPs: 338970 2025-01-31 09:51:01,255 DEBUG Estimated BADs: [0.61, 3.63, 0.61, 3.63, 0.91, 0.45, 5.45, 0.61, 5.45, 1.82, 7.27, 3.63, 1.82, 12.72, 0.61, 5.45, 1.82, 7.27, 0.91, 3.63, 0.91, 16.35, 1.82, 10.90, 0.91, 3.63, 0.91, 5.45, 18.17, 3.63, 7.27, 0.91, 0.45, 1.82, 0.36, 3.63, 1.82, 0.45, 1.82, 5.45, 1.82, 0.45, 3.63, 0.45, 3.63, 12.72, 3.63, 0.91, 1.82, 18.17, 3.63, 7.27, 3.63, 1.82, 7.27, 3.63] SNP counts: [10765, 826, 5316, 755, 5331, 23964, 282, 4178, 2685, 1982, 1802, 4550, 8764, 139, 13208, 948, 4202, 444, 5651, 12517, 12428, 199, 3530, 2385, 12754, 1160, 2607, 1894, 449, 11625, 1922, 7873, 9620, 4605, 18587, 3238, 3918, 3856, 11404, 10824, 5675, 6688, 1418, 9703, 37895, 708, 2679, 6834, 2594, 184, 2144, 3259, 7540, 10035, 2228, 6199] SNP IDs counts: [10765, 826, 5316, 755, 5331, 23964, 282, 4178, 2685, 1982, 1802, 4550, 8764, 139, 13208, 948, 4202, 444, 5651, 12517, 12428, 199, 3530, 2385, 12754, 1160, 2607, 1894, 449, 11625, 1922, 7873, 9620, 4605, 18587, 3238, 3918, 3856, 11404, 10824, 5675, 6688, 1418, 9703, 37895, 708, 2679, 6834, 2594, 184, 2144, 3259, 7540, 10035, 2228, 6199] Critical gap: 759305bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.98Mbp, 13.11Mbp, 13.52Mbp, 16.62Mbp, 30.80Mbp, 30.95Mbp, 33.45Mbp, 34.90Mbp, 36.01Mbp, 36.96Mbp, 39.37Mbp, 44.10Mbp, 44.18Mbp, 52.10Mbp, 52.62Mbp, 55.01Mbp, 55.24Mbp, 58.39Mbp, 65.21Mbp, 72.21Mbp, 72.31Mbp, 74.24Mbp, 75.56Mbp, 82.71Mbp, 83.33Mbp, 84.84Mbp, 86.35Mbp, 86.59Mbp, 92.82Mbp, 93.83Mbp, 98.65Mbp, 104.43Mbp, 107.01Mbp, 118.30Mbp, 120.01Mbp, 122.17Mbp, 124.38Mbp, 130.71Mbp, 136.41Mbp, 139.55Mbp, 143.70Mbp, 144.53Mbp, 150.39Mbp, 171.03Mbp, 171.41Mbp, 172.90Mbp, 176.81Mbp, 178.30Mbp, 178.40Mbp, 179.52Mbp, 181.26Mbp, 185.41Mbp, 190.76Mbp, 191.94Mbp, 195.47Mbp] 2025-01-31 09:51:01,255 DEBUG chr1 time: 427.2624863330275 s 2025-01-31 09:51:01,296 DEBUG Processing 424/851 atomic regions from SNP 126963 to 127563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,415 DEBUG Segmenting atomic regions: 2025-01-31 09:51:01,470 DEBUG chr1: Fitting background model for 56 segments 2025-01-31 09:51:01,514 DEBUG Processing 1/742 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,534 DEBUG Processing 425/851 atomic regions from SNP 127263 to 127863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,745 DEBUG Processing 2/742 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,780 DEBUG Processing 426/851 atomic regions from SNP 127563 to 128163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,980 DEBUG Processing 3/742 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,031 DEBUG Processing 427/851 atomic regions from SNP 127863 to 128463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,207 DEBUG Processing 4/742 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,275 DEBUG Processing 428/851 atomic regions from SNP 128163 to 128763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,432 DEBUG Processing 5/742 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,514 DEBUG Processing 429/851 atomic regions from SNP 128463 to 129063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,668 DEBUG Processing 6/742 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,748 DEBUG Processing 430/851 atomic regions from SNP 128763 to 129363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,897 DEBUG Processing 7/742 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,907 DEBUG Segmenting atomic regions: 2025-01-31 09:51:02,981 DEBUG Processing 431/851 atomic regions from SNP 129063 to 129663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,004 DEBUG Processing 1/729 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,141 DEBUG Processing 8/742 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,215 DEBUG Processing 432/851 atomic regions from SNP 129363 to 129963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,229 DEBUG Processing 2/729 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,386 DEBUG Processing 9/742 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,454 DEBUG Processing 433/851 atomic regions from SNP 129663 to 130263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,477 DEBUG Processing 3/729 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,613 DEBUG Processing 10/742 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,686 DEBUG Processing 434/851 atomic regions from SNP 129963 to 130563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,725 DEBUG Processing 4/729 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,845 DEBUG Processing 11/742 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,921 DEBUG Processing 435/851 atomic regions from SNP 130263 to 130863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,949 DEBUG Processing 5/729 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,077 DEBUG Processing 12/742 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,158 DEBUG Processing 436/851 atomic regions from SNP 130563 to 131163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,177 DEBUG Processing 6/729 atomic regions from SNP 1505 to 2105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,306 DEBUG Processing 13/742 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,390 DEBUG Processing 437/851 atomic regions from SNP 130863 to 131463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,425 DEBUG Processing 7/729 atomic regions from SNP 1805 to 2405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,539 DEBUG Processing 14/742 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,619 DEBUG Processing 438/851 atomic regions from SNP 131163 to 131763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,679 DEBUG Processing 8/729 atomic regions from SNP 2105 to 2705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,758 DEBUG Processing 15/742 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,851 DEBUG Processing 439/851 atomic regions from SNP 131463 to 132063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,913 DEBUG Processing 9/729 atomic regions from SNP 2405 to 3005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,989 DEBUG Processing 16/742 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,084 DEBUG Processing 440/851 atomic regions from SNP 131763 to 132363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,143 DEBUG Processing 10/729 atomic regions from SNP 2705 to 3305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,235 DEBUG Processing 17/742 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,322 DEBUG Processing 441/851 atomic regions from SNP 132063 to 132663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,372 DEBUG Processing 11/729 atomic regions from SNP 3005 to 3605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,455 DEBUG Processing 18/742 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,559 DEBUG Processing 442/851 atomic regions from SNP 132363 to 132963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,603 DEBUG Processing 12/729 atomic regions from SNP 3305 to 3905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,681 DEBUG Processing 19/742 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,800 DEBUG Processing 443/851 atomic regions from SNP 132663 to 133263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,842 DEBUG Processing 13/729 atomic regions from SNP 3605 to 4205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,911 DEBUG Processing 20/742 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,038 DEBUG Processing 444/851 atomic regions from SNP 132963 to 133563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,071 DEBUG Processing 14/729 atomic regions from SNP 3905 to 4505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,137 DEBUG Processing 21/742 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,276 DEBUG Processing 445/851 atomic regions from SNP 133263 to 133863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,302 DEBUG Processing 15/729 atomic regions from SNP 4205 to 4805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,363 DEBUG Processing 22/742 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,519 DEBUG Processing 446/851 atomic regions from SNP 133563 to 134163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,540 DEBUG Processing 16/729 atomic regions from SNP 4505 to 5105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,591 DEBUG Processing 23/742 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,749 DEBUG Processing 447/851 atomic regions from SNP 133863 to 134463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,760 DEBUG Processing 17/729 atomic regions from SNP 4805 to 5405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,813 DEBUG Processing 24/742 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,976 DEBUG Processing 448/851 atomic regions from SNP 134163 to 134763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,987 DEBUG Processing 18/729 atomic regions from SNP 5105 to 5705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,042 DEBUG Processing 25/742 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,206 DEBUG Processing 449/851 atomic regions from SNP 134463 to 135063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,215 DEBUG Processing 19/729 atomic regions from SNP 5405 to 6005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,287 DEBUG Processing 26/742 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,436 DEBUG Processing 450/851 atomic regions from SNP 134763 to 135363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,446 DEBUG Processing 20/729 atomic regions from SNP 5705 to 6305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,537 DEBUG Processing 27/742 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,674 DEBUG Processing 451/851 atomic regions from SNP 135063 to 135663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,675 DEBUG Processing 21/729 atomic regions from SNP 6005 to 6605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,769 DEBUG Processing 28/742 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,901 DEBUG Processing 22/729 atomic regions from SNP 6305 to 6905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,912 DEBUG Processing 452/851 atomic regions from SNP 135363 to 135963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,988 DEBUG Processing 29/742 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,136 DEBUG Processing 23/729 atomic regions from SNP 6605 to 7205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,155 DEBUG Processing 453/851 atomic regions from SNP 135663 to 136263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,215 DEBUG Processing 30/742 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,363 DEBUG Processing 24/729 atomic regions from SNP 6905 to 7505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,389 DEBUG Processing 454/851 atomic regions from SNP 135963 to 136563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,440 DEBUG Processing 31/742 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,584 DEBUG Processing 25/729 atomic regions from SNP 7205 to 7805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,624 DEBUG Processing 455/851 atomic regions from SNP 136263 to 136863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,665 DEBUG Processing 32/742 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,808 DEBUG Processing 26/729 atomic regions from SNP 7505 to 8105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,863 DEBUG Processing 456/851 atomic regions from SNP 136563 to 137163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,891 DEBUG Processing 33/742 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,031 DEBUG Processing 27/729 atomic regions from SNP 7805 to 8405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,101 DEBUG Processing 457/851 atomic regions from SNP 136863 to 137463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,117 DEBUG Processing 34/742 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,249 DEBUG Processing 28/729 atomic regions from SNP 8105 to 8705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,344 DEBUG Processing 35/742 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,365 DEBUG Processing 458/851 atomic regions from SNP 137163 to 137763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,467 DEBUG Processing 29/729 atomic regions from SNP 8405 to 9005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,570 DEBUG Processing 36/742 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,619 DEBUG Processing 459/851 atomic regions from SNP 137463 to 138063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,690 DEBUG Processing 30/729 atomic regions from SNP 8705 to 9305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,789 DEBUG Processing 37/742 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,894 DEBUG Processing 460/851 atomic regions from SNP 137763 to 138363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,914 DEBUG Processing 31/729 atomic regions from SNP 9005 to 9605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,003 DEBUG Processing 38/742 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,135 DEBUG Processing 32/729 atomic regions from SNP 9305 to 9905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,169 DEBUG Processing 461/851 atomic regions from SNP 138063 to 138663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,218 DEBUG Processing 39/742 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,358 DEBUG Processing 33/729 atomic regions from SNP 9605 to 10205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,432 DEBUG Processing 40/742 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,437 DEBUG Processing 462/851 atomic regions from SNP 138363 to 138963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,581 DEBUG Processing 34/729 atomic regions from SNP 9905 to 10505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,650 DEBUG Processing 41/742 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,699 DEBUG Processing 463/851 atomic regions from SNP 138663 to 139263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,806 DEBUG Processing 35/729 atomic regions from SNP 10205 to 10805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,865 DEBUG Processing 42/742 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,952 DEBUG Processing 464/851 atomic regions from SNP 138963 to 139563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,035 DEBUG Processing 36/729 atomic regions from SNP 10505 to 11105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,081 DEBUG Processing 43/742 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,224 DEBUG Processing 465/851 atomic regions from SNP 139263 to 139863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,264 DEBUG Processing 37/729 atomic regions from SNP 10805 to 11405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,294 DEBUG Processing 44/742 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,462 DEBUG Processing 466/851 atomic regions from SNP 139563 to 140163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,508 DEBUG Processing 38/729 atomic regions from SNP 11105 to 11705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,515 DEBUG Processing 45/742 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,701 DEBUG Processing 467/851 atomic regions from SNP 139863 to 140463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,739 DEBUG Processing 46/742 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,743 DEBUG Processing 39/729 atomic regions from SNP 11405 to 12005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,946 DEBUG Processing 468/851 atomic regions from SNP 140163 to 140763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,968 DEBUG Processing 47/742 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,974 DEBUG Processing 40/729 atomic regions from SNP 11705 to 12305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,196 DEBUG Processing 469/851 atomic regions from SNP 140463 to 141063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,203 DEBUG Processing 41/729 atomic regions from SNP 12005 to 12605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,204 DEBUG Processing 48/742 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,433 DEBUG Processing 42/729 atomic regions from SNP 12305 to 12905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,440 DEBUG Processing 49/742 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,446 DEBUG Processing 470/851 atomic regions from SNP 140763 to 141363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,665 DEBUG Processing 43/729 atomic regions from SNP 12605 to 13205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,671 DEBUG Processing 50/742 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,696 DEBUG Processing 471/851 atomic regions from SNP 141063 to 141663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,887 DEBUG Processing 44/729 atomic regions from SNP 12905 to 13505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,895 DEBUG Processing 51/742 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,939 DEBUG Processing 472/851 atomic regions from SNP 141363 to 141963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,118 DEBUG Processing 52/742 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,118 DEBUG Processing 45/729 atomic regions from SNP 13205 to 13805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,188 DEBUG Processing 473/851 atomic regions from SNP 141663 to 142263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,341 DEBUG Processing 53/742 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,368 DEBUG Processing 46/729 atomic regions from SNP 13505 to 14105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,456 DEBUG Processing 474/851 atomic regions from SNP 141963 to 142563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,559 DEBUG Processing 54/742 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,601 DEBUG Processing 47/729 atomic regions from SNP 13805 to 14405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,731 DEBUG Processing 475/851 atomic regions from SNP 142263 to 142863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,777 DEBUG Processing 55/742 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,838 DEBUG Processing 48/729 atomic regions from SNP 14105 to 14705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,972 DEBUG Processing 476/851 atomic regions from SNP 142563 to 143163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,996 DEBUG Processing 56/742 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,096 DEBUG Processing 49/729 atomic regions from SNP 14405 to 15005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,224 DEBUG Processing 477/851 atomic regions from SNP 142863 to 143463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,238 DEBUG Processing 57/742 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,349 DEBUG Processing 50/729 atomic regions from SNP 14705 to 15305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,493 DEBUG Processing 58/742 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,497 DEBUG Processing 478/851 atomic regions from SNP 143163 to 143763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,575 DEBUG Processing 51/729 atomic regions from SNP 15005 to 15605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,715 DEBUG Processing 59/742 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,754 DEBUG Processing 479/851 atomic regions from SNP 143463 to 144063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,793 DEBUG Processing 52/729 atomic regions from SNP 15305 to 15905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,933 DEBUG Processing 60/742 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,015 DEBUG Processing 480/851 atomic regions from SNP 143763 to 144363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,017 DEBUG Processing 53/729 atomic regions from SNP 15605 to 16205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,105 DEBUG Segmenting atomic regions: 2025-01-31 09:51:15,144 DEBUG Processing 61/742 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,210 DEBUG Processing 1/699 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,242 DEBUG Processing 54/729 atomic regions from SNP 15905 to 16505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,286 DEBUG Processing 481/851 atomic regions from SNP 144063 to 144663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,354 DEBUG Processing 62/742 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,428 DEBUG Processing 2/699 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,463 DEBUG Processing 55/729 atomic regions from SNP 16205 to 16805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,559 DEBUG Processing 482/851 atomic regions from SNP 144363 to 144963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,584 DEBUG Processing 63/742 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,643 DEBUG Processing 3/699 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,683 DEBUG Processing 56/729 atomic regions from SNP 16505 to 17105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,819 DEBUG Processing 483/851 atomic regions from SNP 144663 to 145263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,821 DEBUG Processing 64/742 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,858 DEBUG Processing 4/699 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,904 DEBUG Processing 57/729 atomic regions from SNP 16805 to 17405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,036 DEBUG Processing 65/742 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,078 DEBUG Processing 484/851 atomic regions from SNP 144963 to 145563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,080 DEBUG Processing 5/699 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,142 DEBUG Processing 58/729 atomic regions from SNP 17105 to 17705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,254 DEBUG Processing 66/742 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,325 DEBUG Processing 6/699 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,344 DEBUG Processing 485/851 atomic regions from SNP 145263 to 145863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,402 DEBUG Processing 59/729 atomic regions from SNP 17405 to 18005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,467 DEBUG Processing 67/742 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,590 DEBUG Processing 7/699 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,604 DEBUG Processing 486/851 atomic regions from SNP 145563 to 146163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,660 DEBUG Processing 60/729 atomic regions from SNP 17705 to 18305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,681 DEBUG Processing 68/742 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,831 DEBUG Processing 8/699 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,850 DEBUG Processing 487/851 atomic regions from SNP 145863 to 146463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,901 DEBUG Processing 69/742 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,905 DEBUG Processing 61/729 atomic regions from SNP 18005 to 18605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,074 DEBUG Processing 9/699 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,111 DEBUG Processing 488/851 atomic regions from SNP 146163 to 146763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,128 DEBUG Processing 70/742 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,132 DEBUG Processing 62/729 atomic regions from SNP 18305 to 18905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,329 DEBUG Processing 10/699 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,355 DEBUG Processing 71/742 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,366 DEBUG Processing 63/729 atomic regions from SNP 18605 to 19205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,386 DEBUG Processing 489/851 atomic regions from SNP 146463 to 147063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,583 DEBUG Processing 11/699 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,584 DEBUG Processing 72/742 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,601 DEBUG Processing 64/729 atomic regions from SNP 18905 to 19505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,663 DEBUG Processing 490/851 atomic regions from SNP 146763 to 147363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,804 DEBUG Processing 73/742 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,820 DEBUG Processing 65/729 atomic regions from SNP 19205 to 19805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,833 DEBUG Processing 12/699 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,933 DEBUG Processing 491/851 atomic regions from SNP 147063 to 147663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,024 DEBUG Processing 74/742 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,037 DEBUG Processing 66/729 atomic regions from SNP 19505 to 20105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,076 DEBUG Processing 13/699 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,199 DEBUG Processing 492/851 atomic regions from SNP 147363 to 147963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,243 DEBUG Processing 75/742 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,259 DEBUG Processing 67/729 atomic regions from SNP 19805 to 20405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,323 DEBUG Processing 14/699 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,459 DEBUG Processing 493/851 atomic regions from SNP 147663 to 148263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,467 DEBUG Processing 76/742 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,483 DEBUG Processing 68/729 atomic regions from SNP 20105 to 20705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,573 DEBUG Processing 15/699 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,695 DEBUG Processing 77/742 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,710 DEBUG Processing 69/729 atomic regions from SNP 20405 to 21005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,727 DEBUG Processing 494/851 atomic regions from SNP 147963 to 148563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,795 DEBUG Processing 16/699 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,921 DEBUG Processing 78/742 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,961 DEBUG Processing 70/729 atomic regions from SNP 20705 to 21305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,005 DEBUG Processing 495/851 atomic regions from SNP 148263 to 148863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,021 DEBUG Processing 17/699 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,144 DEBUG Processing 79/742 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,194 DEBUG Processing 71/729 atomic regions from SNP 21005 to 21605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,251 DEBUG Processing 18/699 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,285 DEBUG Processing 496/851 atomic regions from SNP 148563 to 149163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,362 DEBUG Processing 80/742 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,420 DEBUG Processing 72/729 atomic regions from SNP 21305 to 21905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,481 DEBUG Processing 19/699 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,559 DEBUG Processing 497/851 atomic regions from SNP 148863 to 149463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,587 DEBUG Processing 81/742 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,649 DEBUG Processing 73/729 atomic regions from SNP 21605 to 22205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,712 DEBUG Processing 20/699 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,811 DEBUG Processing 82/742 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,819 DEBUG Processing 498/851 atomic regions from SNP 149163 to 149763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,880 DEBUG Processing 74/729 atomic regions from SNP 21905 to 22505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,940 DEBUG Processing 21/699 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,044 DEBUG Processing 83/742 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,095 DEBUG Processing 499/851 atomic regions from SNP 149463 to 150063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,113 DEBUG Processing 75/729 atomic regions from SNP 22205 to 22805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,208 DEBUG Processing 22/699 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,274 DEBUG Processing 84/742 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,343 DEBUG Processing 76/729 atomic regions from SNP 22505 to 23105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,359 DEBUG Processing 500/851 atomic regions from SNP 149763 to 150363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,467 DEBUG Processing 23/699 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,507 DEBUG Processing 85/742 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,570 DEBUG Processing 77/729 atomic regions from SNP 22805 to 23405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,633 DEBUG Processing 501/851 atomic regions from SNP 150063 to 150663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,719 DEBUG Processing 24/699 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,741 DEBUG Processing 86/742 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,798 DEBUG Processing 78/729 atomic regions from SNP 23105 to 23705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,872 DEBUG Processing 502/851 atomic regions from SNP 150363 to 150963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,971 DEBUG Processing 25/699 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,974 DEBUG Processing 87/742 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,029 DEBUG Processing 79/729 atomic regions from SNP 23405 to 24005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,114 DEBUG Processing 503/851 atomic regions from SNP 150663 to 151263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,202 DEBUG Processing 26/699 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,209 DEBUG Processing 88/742 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,264 DEBUG Processing 80/729 atomic regions from SNP 23705 to 24305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,361 DEBUG Processing 504/851 atomic regions from SNP 150963 to 151563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,441 DEBUG Processing 27/699 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,464 DEBUG Processing 89/742 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,498 DEBUG Processing 81/729 atomic regions from SNP 24005 to 24605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,625 DEBUG Processing 505/851 atomic regions from SNP 151263 to 151863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,704 DEBUG Processing 90/742 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,705 DEBUG Processing 28/699 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,729 DEBUG Processing 82/729 atomic regions from SNP 24305 to 24905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,895 DEBUG Processing 506/851 atomic regions from SNP 151563 to 152163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,941 DEBUG Processing 91/742 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,957 DEBUG Processing 83/729 atomic regions from SNP 24605 to 25205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,964 DEBUG Processing 29/699 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,165 DEBUG Processing 507/851 atomic regions from SNP 151863 to 152463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,179 DEBUG Processing 92/742 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,183 DEBUG Processing 84/729 atomic regions from SNP 24905 to 25505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,218 DEBUG Processing 30/699 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,414 DEBUG Processing 85/729 atomic regions from SNP 25205 to 25805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,417 DEBUG Processing 93/742 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,431 DEBUG Processing 508/851 atomic regions from SNP 152163 to 152763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,475 DEBUG Processing 31/699 atomic regions from SNP 9030 to 9630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,646 DEBUG Processing 86/729 atomic regions from SNP 25505 to 26105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,649 DEBUG Processing 94/742 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,710 DEBUG Processing 509/851 atomic regions from SNP 152463 to 153063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,742 DEBUG Processing 32/699 atomic regions from SNP 9330 to 9930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,868 DEBUG Processing 87/729 atomic regions from SNP 25805 to 26405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,875 DEBUG Processing 95/742 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,984 DEBUG Processing 510/851 atomic regions from SNP 152763 to 153363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,014 DEBUG Processing 33/699 atomic regions from SNP 9630 to 10230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,098 DEBUG Processing 88/729 atomic regions from SNP 26105 to 26705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,106 DEBUG Processing 96/742 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,252 DEBUG Processing 511/851 atomic regions from SNP 153063 to 153663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,272 DEBUG Processing 34/699 atomic regions from SNP 9930 to 10530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,331 DEBUG Processing 89/729 atomic regions from SNP 26405 to 27005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,351 DEBUG Processing 97/742 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,525 DEBUG Processing 512/851 atomic regions from SNP 153363 to 153963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,539 DEBUG Processing 35/699 atomic regions from SNP 10230 to 10830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,557 DEBUG Processing 90/729 atomic regions from SNP 26705 to 27305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,603 DEBUG Processing 98/742 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,782 DEBUG Processing 36/699 atomic regions from SNP 10530 to 11130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,790 DEBUG Processing 91/729 atomic regions from SNP 27005 to 27605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,800 DEBUG Processing 513/851 atomic regions from SNP 153663 to 154263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,852 DEBUG Processing 99/742 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,016 DEBUG Processing 37/699 atomic regions from SNP 10830 to 11430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,024 DEBUG Processing 92/729 atomic regions from SNP 27305 to 27905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,059 DEBUG Processing 514/851 atomic regions from SNP 153963 to 154563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,100 DEBUG Processing 100/742 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,256 DEBUG Processing 93/729 atomic regions from SNP 27605 to 28205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,262 DEBUG Processing 38/699 atomic regions from SNP 11130 to 11730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,325 DEBUG Processing 515/851 atomic regions from SNP 154263 to 154863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,357 DEBUG Processing 101/742 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,484 DEBUG Processing 94/729 atomic regions from SNP 27905 to 28505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,503 DEBUG Processing 39/699 atomic regions from SNP 11430 to 12030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,585 DEBUG Processing 102/742 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,587 DEBUG Processing 516/851 atomic regions from SNP 154563 to 155163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,698 DEBUG Processing 95/729 atomic regions from SNP 28205 to 28805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,752 DEBUG Processing 40/699 atomic regions from SNP 11730 to 12330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,818 DEBUG Processing 103/742 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,834 DEBUG Processing 517/851 atomic regions from SNP 154863 to 155463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,916 DEBUG Processing 96/729 atomic regions from SNP 28505 to 29105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,007 DEBUG Processing 41/699 atomic regions from SNP 12030 to 12630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,051 DEBUG Processing 104/742 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,083 DEBUG Processing 518/851 atomic regions from SNP 155163 to 155763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,129 DEBUG Processing 97/729 atomic regions from SNP 28805 to 29405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,263 DEBUG Processing 42/699 atomic regions from SNP 12330 to 12930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,292 DEBUG Processing 105/742 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,333 DEBUG Processing 519/851 atomic regions from SNP 155463 to 156063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,343 DEBUG Processing 98/729 atomic regions from SNP 29105 to 29705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,522 DEBUG Processing 43/699 atomic regions from SNP 12630 to 13230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,529 DEBUG Processing 106/742 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,562 DEBUG Processing 99/729 atomic regions from SNP 29405 to 30005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,583 DEBUG Processing 520/851 atomic regions from SNP 155763 to 156363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,776 DEBUG Processing 107/742 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,780 DEBUG Processing 44/699 atomic regions from SNP 12930 to 13530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,800 DEBUG Processing 100/729 atomic regions from SNP 29705 to 30305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,840 DEBUG Processing 521/851 atomic regions from SNP 156063 to 156663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,019 DEBUG Processing 108/742 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,031 DEBUG Processing 45/699 atomic regions from SNP 13230 to 13830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,044 DEBUG Processing 101/729 atomic regions from SNP 30005 to 30605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,089 DEBUG Processing 522/851 atomic regions from SNP 156363 to 156963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,258 DEBUG Processing 109/742 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,262 DEBUG Processing 46/699 atomic regions from SNP 13530 to 14130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,300 DEBUG Processing 102/729 atomic regions from SNP 30305 to 30905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,332 DEBUG Processing 523/851 atomic regions from SNP 156663 to 157263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,491 DEBUG Processing 110/742 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,494 DEBUG Processing 47/699 atomic regions from SNP 13830 to 14430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,536 DEBUG Processing 103/729 atomic regions from SNP 30605 to 31205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,582 DEBUG Processing 524/851 atomic regions from SNP 156963 to 157563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,723 DEBUG Processing 48/699 atomic regions from SNP 14130 to 14730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,725 DEBUG Processing 111/742 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,765 DEBUG Processing 104/729 atomic regions from SNP 30905 to 31505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,825 DEBUG Processing 525/851 atomic regions from SNP 157263 to 157863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,947 DEBUG Processing 49/699 atomic regions from SNP 14430 to 15030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,950 DEBUG Processing 112/742 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,977 DEBUG Processing 105/729 atomic regions from SNP 31205 to 31805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,069 DEBUG Processing 526/851 atomic regions from SNP 157563 to 158163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,168 DEBUG Processing 50/699 atomic regions from SNP 14730 to 15330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,171 DEBUG Processing 113/742 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,197 DEBUG Processing 106/729 atomic regions from SNP 31505 to 32105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,310 DEBUG Processing 527/851 atomic regions from SNP 157863 to 158463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,393 DEBUG Processing 51/699 atomic regions from SNP 15030 to 15630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,397 DEBUG Processing 114/742 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,417 DEBUG Processing 107/729 atomic regions from SNP 31805 to 32405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,556 DEBUG Processing 528/851 atomic regions from SNP 158163 to 158763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,621 DEBUG Processing 52/699 atomic regions from SNP 15330 to 15930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,624 DEBUG Processing 115/742 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,648 DEBUG Processing 108/729 atomic regions from SNP 32105 to 32705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,803 DEBUG Processing 529/851 atomic regions from SNP 158463 to 159063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,852 DEBUG Processing 53/699 atomic regions from SNP 15630 to 16230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,852 DEBUG Processing 116/742 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,866 DEBUG Processing 109/729 atomic regions from SNP 32405 to 33005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,047 DEBUG Processing 530/851 atomic regions from SNP 158763 to 159363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,082 DEBUG Processing 110/729 atomic regions from SNP 32705 to 33305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,086 DEBUG Processing 117/742 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,103 DEBUG Processing 54/699 atomic regions from SNP 15930 to 16530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,295 DEBUG Processing 111/729 atomic regions from SNP 33005 to 33605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,301 DEBUG Processing 531/851 atomic regions from SNP 159063 to 159663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,320 DEBUG Processing 118/742 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,362 DEBUG Processing 55/699 atomic regions from SNP 16230 to 16830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,512 DEBUG Processing 112/729 atomic regions from SNP 33305 to 33905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,554 DEBUG Processing 119/742 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,575 DEBUG Processing 532/851 atomic regions from SNP 159363 to 159963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,596 DEBUG Processing 56/699 atomic regions from SNP 16530 to 17130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,717 DEBUG Processing 113/729 atomic regions from SNP 33605 to 34205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,791 DEBUG Processing 120/742 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,833 DEBUG Processing 57/699 atomic regions from SNP 16830 to 17430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,846 DEBUG Processing 533/851 atomic regions from SNP 159663 to 160263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,924 DEBUG Processing 114/729 atomic regions from SNP 33905 to 34505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,020 DEBUG Processing 121/742 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,067 DEBUG Processing 58/699 atomic regions from SNP 17130 to 17730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,121 DEBUG Processing 534/851 atomic regions from SNP 159963 to 160563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,134 DEBUG Processing 115/729 atomic regions from SNP 34205 to 34805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,261 DEBUG Processing 122/742 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,295 DEBUG Processing 59/699 atomic regions from SNP 17430 to 18030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,356 DEBUG Processing 116/729 atomic regions from SNP 34505 to 35105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,376 DEBUG Processing 535/851 atomic regions from SNP 160263 to 160863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,499 DEBUG Processing 123/742 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,520 DEBUG Processing 60/699 atomic regions from SNP 17730 to 18330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,578 DEBUG Processing 117/729 atomic regions from SNP 34805 to 35405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,633 DEBUG Processing 536/851 atomic regions from SNP 160563 to 161163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,720 DEBUG Processing 124/742 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,761 DEBUG Processing 61/699 atomic regions from SNP 18030 to 18630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,798 DEBUG Processing 118/729 atomic regions from SNP 35105 to 35705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,884 DEBUG Processing 537/851 atomic regions from SNP 160863 to 161463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,944 DEBUG Processing 125/742 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,012 DEBUG Processing 62/699 atomic regions from SNP 18330 to 18930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,023 DEBUG Processing 119/729 atomic regions from SNP 35405 to 36005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,128 DEBUG Processing 538/851 atomic regions from SNP 161163 to 161763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,170 DEBUG Processing 126/742 atomic regions from SNP 37625 to 38225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,240 DEBUG Processing 120/729 atomic regions from SNP 35705 to 36305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,269 DEBUG Processing 63/699 atomic regions from SNP 18630 to 19230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,369 DEBUG Processing 539/851 atomic regions from SNP 161463 to 162063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,393 DEBUG Processing 127/742 atomic regions from SNP 37925 to 38525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,456 DEBUG Processing 121/729 atomic regions from SNP 36005 to 36605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,515 DEBUG Processing 64/699 atomic regions from SNP 18930 to 19530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,606 DEBUG Processing 540/851 atomic regions from SNP 161763 to 162363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,612 DEBUG Processing 128/742 atomic regions from SNP 38225 to 38825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,680 DEBUG Processing 122/729 atomic regions from SNP 36305 to 36905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,739 DEBUG Processing 65/699 atomic regions from SNP 19230 to 19830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,840 DEBUG Processing 129/742 atomic regions from SNP 38525 to 39125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,847 DEBUG Processing 541/851 atomic regions from SNP 162063 to 162663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,925 DEBUG Processing 123/729 atomic regions from SNP 36605 to 37205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,962 DEBUG Processing 66/699 atomic regions from SNP 19530 to 20130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,065 DEBUG Processing 130/742 atomic regions from SNP 38825 to 39425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,094 DEBUG Processing 542/851 atomic regions from SNP 162363 to 162963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,169 DEBUG Processing 124/729 atomic regions from SNP 36905 to 37505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,184 DEBUG Processing 67/699 atomic regions from SNP 19830 to 20430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,296 DEBUG Processing 131/742 atomic regions from SNP 39125 to 39725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,337 DEBUG Processing 543/851 atomic regions from SNP 162663 to 163263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,406 DEBUG Processing 68/699 atomic regions from SNP 20130 to 20730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,411 DEBUG Processing 125/729 atomic regions from SNP 37205 to 37805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,523 DEBUG Processing 132/742 atomic regions from SNP 39425 to 40025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,580 DEBUG Processing 544/851 atomic regions from SNP 162963 to 163563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,628 DEBUG Processing 69/699 atomic regions from SNP 20430 to 21030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,651 DEBUG Processing 126/729 atomic regions from SNP 37505 to 38105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,750 DEBUG Processing 133/742 atomic regions from SNP 39725 to 40325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,824 DEBUG Processing 545/851 atomic regions from SNP 163263 to 163863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,852 DEBUG Processing 70/699 atomic regions from SNP 20730 to 21330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,878 DEBUG Processing 127/729 atomic regions from SNP 37805 to 38405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,972 DEBUG Processing 134/742 atomic regions from SNP 40025 to 40625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,079 DEBUG Processing 546/851 atomic regions from SNP 163563 to 164163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,081 DEBUG Processing 71/699 atomic regions from SNP 21030 to 21630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,099 DEBUG Processing 128/729 atomic regions from SNP 38105 to 38705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,199 DEBUG Processing 135/742 atomic regions from SNP 40325 to 40925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,310 DEBUG Processing 72/699 atomic regions from SNP 21330 to 21930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,316 DEBUG Processing 129/729 atomic regions from SNP 38405 to 39005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,354 DEBUG Processing 547/851 atomic regions from SNP 163863 to 164463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,418 DEBUG Processing 136/742 atomic regions from SNP 40625 to 41225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,534 DEBUG Processing 130/729 atomic regions from SNP 38705 to 39305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,537 DEBUG Processing 73/699 atomic regions from SNP 21630 to 22230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,598 DEBUG Processing 548/851 atomic regions from SNP 164163 to 164763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,643 DEBUG Processing 137/742 atomic regions from SNP 40925 to 41525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,763 DEBUG Processing 131/729 atomic regions from SNP 39005 to 39605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,763 DEBUG Processing 74/699 atomic regions from SNP 21930 to 22530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,838 DEBUG Processing 549/851 atomic regions from SNP 164463 to 165063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,867 DEBUG Processing 138/742 atomic regions from SNP 41225 to 41825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,985 DEBUG Processing 75/699 atomic regions from SNP 22230 to 22830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,009 DEBUG Processing 132/729 atomic regions from SNP 39305 to 39905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,076 DEBUG Processing 550/851 atomic regions from SNP 164763 to 165363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,093 DEBUG Processing 139/742 atomic regions from SNP 41525 to 42125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,206 DEBUG Processing 76/699 atomic regions from SNP 22530 to 23130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,258 DEBUG Processing 133/729 atomic regions from SNP 39605 to 40205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,321 DEBUG Processing 140/742 atomic regions from SNP 41825 to 42425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,329 DEBUG Processing 551/851 atomic regions from SNP 165063 to 165663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,436 DEBUG Processing 77/699 atomic regions from SNP 22830 to 23430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,480 DEBUG Processing 134/729 atomic regions from SNP 39905 to 40505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,548 DEBUG Processing 141/742 atomic regions from SNP 42125 to 42725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,580 DEBUG Processing 552/851 atomic regions from SNP 165363 to 165963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,669 DEBUG Processing 78/699 atomic regions from SNP 23130 to 23730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,698 DEBUG Processing 135/729 atomic regions from SNP 40205 to 40805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,773 DEBUG Processing 142/742 atomic regions from SNP 42425 to 43025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,827 DEBUG Processing 553/851 atomic regions from SNP 165663 to 166263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,922 DEBUG Processing 136/729 atomic regions from SNP 40505 to 41105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,924 DEBUG Processing 79/699 atomic regions from SNP 23430 to 24030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,999 DEBUG Processing 143/742 atomic regions from SNP 42725 to 43325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,071 DEBUG Processing 554/851 atomic regions from SNP 165963 to 166563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,145 DEBUG Processing 137/729 atomic regions from SNP 40805 to 41405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,155 DEBUG Processing 80/699 atomic regions from SNP 23730 to 24330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,222 DEBUG Processing 144/742 atomic regions from SNP 43025 to 43625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,310 DEBUG Processing 555/851 atomic regions from SNP 166263 to 166863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,369 DEBUG Processing 138/729 atomic regions from SNP 41105 to 41705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,386 DEBUG Processing 81/699 atomic regions from SNP 24030 to 24630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,453 DEBUG Processing 145/742 atomic regions from SNP 43325 to 43925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,555 DEBUG Processing 556/851 atomic regions from SNP 166563 to 167163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,589 DEBUG Processing 139/729 atomic regions from SNP 41405 to 42005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,622 DEBUG Processing 82/699 atomic regions from SNP 24330 to 24930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,681 DEBUG Processing 146/742 atomic regions from SNP 43625 to 44225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,793 DEBUG Processing 557/851 atomic regions from SNP 166863 to 167463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,801 DEBUG Processing 140/729 atomic regions from SNP 41705 to 42305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,851 DEBUG Processing 83/699 atomic regions from SNP 24630 to 25230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,904 DEBUG Processing 147/742 atomic regions from SNP 43925 to 44525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,023 DEBUG Processing 141/729 atomic regions from SNP 42005 to 42605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,030 DEBUG Processing 558/851 atomic regions from SNP 167163 to 167763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,087 DEBUG Processing 84/699 atomic regions from SNP 24930 to 25530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,133 DEBUG Processing 148/742 atomic regions from SNP 44225 to 44825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,241 DEBUG Processing 142/729 atomic regions from SNP 42305 to 42905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,276 DEBUG Processing 559/851 atomic regions from SNP 167463 to 168063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,320 DEBUG Processing 85/699 atomic regions from SNP 25230 to 25830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,361 DEBUG Processing 149/742 atomic regions from SNP 44525 to 45125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,457 DEBUG Processing 143/729 atomic regions from SNP 42605 to 43205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,525 DEBUG Processing 560/851 atomic regions from SNP 167763 to 168363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,553 DEBUG Processing 86/699 atomic regions from SNP 25530 to 26130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,586 DEBUG Processing 150/742 atomic regions from SNP 44825 to 45425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,673 DEBUG Processing 144/729 atomic regions from SNP 42905 to 43505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,767 DEBUG Processing 561/851 atomic regions from SNP 168063 to 168663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,779 DEBUG Processing 87/699 atomic regions from SNP 25830 to 26430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,808 DEBUG Processing 151/742 atomic regions from SNP 45125 to 45725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,890 DEBUG Processing 145/729 atomic regions from SNP 43205 to 43805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,004 DEBUG Processing 88/699 atomic regions from SNP 26130 to 26730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,012 DEBUG Processing 562/851 atomic regions from SNP 168363 to 168963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,034 DEBUG Processing 152/742 atomic regions from SNP 45425 to 46025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,107 DEBUG Processing 146/729 atomic regions from SNP 43505 to 44105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,236 DEBUG Processing 89/699 atomic regions from SNP 26430 to 27030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,261 DEBUG Processing 563/851 atomic regions from SNP 168663 to 169263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,270 DEBUG Processing 153/742 atomic regions from SNP 45725 to 46325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,328 DEBUG Processing 147/729 atomic regions from SNP 43805 to 44405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,463 DEBUG Processing 90/699 atomic regions from SNP 26730 to 27330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,504 DEBUG Processing 154/742 atomic regions from SNP 46025 to 46625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,513 DEBUG Processing 564/851 atomic regions from SNP 168963 to 169563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,551 DEBUG Processing 148/729 atomic regions from SNP 44105 to 44705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,690 DEBUG Processing 91/699 atomic regions from SNP 27030 to 27630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,733 DEBUG Processing 155/742 atomic regions from SNP 46325 to 46925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,757 DEBUG Processing 565/851 atomic regions from SNP 169263 to 169863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,765 DEBUG Processing 149/729 atomic regions from SNP 44405 to 45005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,914 DEBUG Processing 92/699 atomic regions from SNP 27330 to 27930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,959 DEBUG Processing 156/742 atomic regions from SNP 46625 to 47225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,982 DEBUG Processing 150/729 atomic regions from SNP 44705 to 45305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,016 DEBUG Processing 566/851 atomic regions from SNP 169563 to 170163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,136 DEBUG Processing 93/699 atomic regions from SNP 27630 to 28230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,181 DEBUG Processing 157/742 atomic regions from SNP 46925 to 47525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,193 DEBUG Processing 151/729 atomic regions from SNP 45005 to 45605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,254 DEBUG Processing 567/851 atomic regions from SNP 169863 to 170463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,358 DEBUG Processing 94/699 atomic regions from SNP 27930 to 28530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,405 DEBUG Processing 158/742 atomic regions from SNP 47225 to 47825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,407 DEBUG Processing 152/729 atomic regions from SNP 45305 to 45905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,496 DEBUG Processing 568/851 atomic regions from SNP 170163 to 170763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,577 DEBUG Processing 95/699 atomic regions from SNP 28230 to 28830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,613 DEBUG Processing 153/729 atomic regions from SNP 45605 to 46205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,625 DEBUG Processing 159/742 atomic regions from SNP 47525 to 48125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,738 DEBUG Processing 569/851 atomic regions from SNP 170463 to 171063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,805 DEBUG Processing 96/699 atomic regions from SNP 28530 to 29130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,820 DEBUG Processing 154/729 atomic regions from SNP 45905 to 46505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,845 DEBUG Processing 160/742 atomic regions from SNP 47825 to 48425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,976 DEBUG Processing 570/851 atomic regions from SNP 170763 to 171363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,022 DEBUG Processing 97/699 atomic regions from SNP 28830 to 29430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,034 DEBUG Processing 155/729 atomic regions from SNP 46205 to 46805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,068 DEBUG Processing 161/742 atomic regions from SNP 48125 to 48725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,210 DEBUG Processing 571/851 atomic regions from SNP 171063 to 171663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,237 DEBUG Processing 98/699 atomic regions from SNP 29130 to 29730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,244 DEBUG Processing 156/729 atomic regions from SNP 46505 to 47105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,291 DEBUG Processing 162/742 atomic regions from SNP 48425 to 49025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,448 DEBUG Processing 572/851 atomic regions from SNP 171363 to 171963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,460 DEBUG Processing 99/699 atomic regions from SNP 29430 to 30030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,466 DEBUG Processing 157/729 atomic regions from SNP 46805 to 47405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,520 DEBUG Processing 163/742 atomic regions from SNP 48725 to 49325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,682 DEBUG Processing 158/729 atomic regions from SNP 47105 to 47705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,682 DEBUG Processing 100/699 atomic regions from SNP 29730 to 30330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,688 DEBUG Processing 573/851 atomic regions from SNP 171663 to 172263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,745 DEBUG Processing 164/742 atomic regions from SNP 49025 to 49625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,899 DEBUG Processing 159/729 atomic regions from SNP 47405 to 48005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,903 DEBUG Processing 101/699 atomic regions from SNP 30030 to 30630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,930 DEBUG Processing 574/851 atomic regions from SNP 171963 to 172563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,969 DEBUG Processing 165/742 atomic regions from SNP 49325 to 49925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,112 DEBUG Processing 160/729 atomic regions from SNP 47705 to 48305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,124 DEBUG Processing 102/699 atomic regions from SNP 30330 to 30930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,173 DEBUG Processing 575/851 atomic regions from SNP 172263 to 172863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,200 DEBUG Processing 166/742 atomic regions from SNP 49625 to 50225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,320 DEBUG Processing 161/729 atomic regions from SNP 48005 to 48605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,343 DEBUG Processing 103/699 atomic regions from SNP 30630 to 31230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,418 DEBUG Processing 576/851 atomic regions from SNP 172563 to 173163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,430 DEBUG Processing 167/742 atomic regions from SNP 49925 to 50525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,528 DEBUG Processing 162/729 atomic regions from SNP 48305 to 48905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,562 DEBUG Processing 104/699 atomic regions from SNP 30930 to 31530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,658 DEBUG Processing 168/742 atomic regions from SNP 50225 to 50825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,666 DEBUG Processing 577/851 atomic regions from SNP 172863 to 173463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,735 DEBUG Processing 163/729 atomic regions from SNP 48605 to 49205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,786 DEBUG Processing 105/699 atomic regions from SNP 31230 to 31830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,884 DEBUG Processing 169/742 atomic regions from SNP 50525 to 51125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,911 DEBUG Processing 578/851 atomic regions from SNP 173163 to 173763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,942 DEBUG Processing 164/729 atomic regions from SNP 48905 to 49505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,009 DEBUG Processing 106/699 atomic regions from SNP 31530 to 32130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,113 DEBUG Processing 170/742 atomic regions from SNP 50825 to 51425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,152 DEBUG Processing 165/729 atomic regions from SNP 49205 to 49805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,155 DEBUG Processing 579/851 atomic regions from SNP 173463 to 174063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,236 DEBUG Processing 107/699 atomic regions from SNP 31830 to 32430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,335 DEBUG Processing 171/742 atomic regions from SNP 51125 to 51725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,362 DEBUG Processing 166/729 atomic regions from SNP 49505 to 50105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,397 DEBUG Processing 580/851 atomic regions from SNP 173763 to 174363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,488 DEBUG Processing 108/699 atomic regions from SNP 32130 to 32730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,554 DEBUG Processing 172/742 atomic regions from SNP 51425 to 52025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,571 DEBUG Processing 167/729 atomic regions from SNP 49805 to 50405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,634 DEBUG Processing 581/851 atomic regions from SNP 174063 to 174663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,745 DEBUG Processing 109/699 atomic regions from SNP 32430 to 33030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,780 DEBUG Processing 173/742 atomic regions from SNP 51725 to 52325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,783 DEBUG Processing 168/729 atomic regions from SNP 50105 to 50705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,865 DEBUG Processing 582/851 atomic regions from SNP 174363 to 174963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,005 DEBUG Processing 110/699 atomic regions from SNP 32730 to 33330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,011 DEBUG Processing 174/742 atomic regions from SNP 52025 to 52625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,012 DEBUG Processing 169/729 atomic regions from SNP 50405 to 51005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,105 DEBUG Processing 583/851 atomic regions from SNP 174663 to 175263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,244 DEBUG Processing 175/742 atomic regions from SNP 52325 to 52925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,245 DEBUG Processing 170/729 atomic regions from SNP 50705 to 51305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,262 DEBUG Processing 111/699 atomic regions from SNP 33030 to 33630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,336 DEBUG Processing 584/851 atomic regions from SNP 174963 to 175563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,471 DEBUG Processing 171/729 atomic regions from SNP 51005 to 51605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,472 DEBUG Processing 176/742 atomic regions from SNP 52625 to 53225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,519 DEBUG Processing 112/699 atomic regions from SNP 33330 to 33930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,567 DEBUG Processing 585/851 atomic regions from SNP 175263 to 175863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,699 DEBUG Processing 177/742 atomic regions from SNP 52925 to 53525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,706 DEBUG Processing 172/729 atomic regions from SNP 51305 to 51905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,773 DEBUG Processing 113/699 atomic regions from SNP 33630 to 34230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,806 DEBUG Processing 586/851 atomic regions from SNP 175563 to 176163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,917 DEBUG Processing 173/729 atomic regions from SNP 51605 to 52205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,922 DEBUG Processing 178/742 atomic regions from SNP 53225 to 53825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,029 DEBUG Processing 114/699 atomic regions from SNP 33930 to 34530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,051 DEBUG Processing 587/851 atomic regions from SNP 175863 to 176463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,122 DEBUG Processing 174/729 atomic regions from SNP 51905 to 52505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,144 DEBUG Processing 179/742 atomic regions from SNP 53525 to 54125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,287 DEBUG Processing 115/699 atomic regions from SNP 34230 to 34830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,294 DEBUG Processing 588/851 atomic regions from SNP 176163 to 176763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,330 DEBUG Processing 175/729 atomic regions from SNP 52205 to 52805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,365 DEBUG Processing 180/742 atomic regions from SNP 53825 to 54425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,534 DEBUG Processing 589/851 atomic regions from SNP 176463 to 177063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,540 DEBUG Processing 176/729 atomic regions from SNP 52505 to 53105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,545 DEBUG Processing 116/699 atomic regions from SNP 34530 to 35130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,587 DEBUG Processing 181/742 atomic regions from SNP 54125 to 54725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,751 DEBUG Processing 177/729 atomic regions from SNP 52805 to 53405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,775 DEBUG Processing 590/851 atomic regions from SNP 176763 to 177363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,800 DEBUG Processing 117/699 atomic regions from SNP 34830 to 35430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,811 DEBUG Processing 182/742 atomic regions from SNP 54425 to 55025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,961 DEBUG Processing 178/729 atomic regions from SNP 53105 to 53705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,016 DEBUG Processing 591/851 atomic regions from SNP 177063 to 177663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,037 DEBUG Processing 183/742 atomic regions from SNP 54725 to 55325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,053 DEBUG Processing 118/699 atomic regions from SNP 35130 to 35730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,172 DEBUG Processing 179/729 atomic regions from SNP 53405 to 54005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,261 DEBUG Processing 592/851 atomic regions from SNP 177363 to 177963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,266 DEBUG Processing 184/742 atomic regions from SNP 55025 to 55625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,296 DEBUG Processing 119/699 atomic regions from SNP 35430 to 36030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,381 DEBUG Processing 180/729 atomic regions from SNP 53705 to 54305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,495 DEBUG Processing 185/742 atomic regions from SNP 55325 to 55925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,509 DEBUG Processing 593/851 atomic regions from SNP 177663 to 178263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,523 DEBUG Processing 120/699 atomic regions from SNP 35730 to 36330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,604 DEBUG Processing 181/729 atomic regions from SNP 54005 to 54605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,721 DEBUG Processing 186/742 atomic regions from SNP 55625 to 56225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,747 DEBUG Processing 121/699 atomic regions from SNP 36030 to 36630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,753 DEBUG Processing 594/851 atomic regions from SNP 177963 to 178563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:43,818 DEBUG Processing 182/729 atomic regions from SNP 54305 to 54905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,946 DEBUG Processing 187/742 atomic regions from SNP 55925 to 56525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,974 DEBUG Processing 122/699 atomic regions from SNP 36330 to 36930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,002 DEBUG Processing 595/851 atomic regions from SNP 178263 to 178863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,034 DEBUG Processing 183/729 atomic regions from SNP 54605 to 55205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,176 DEBUG Processing 188/742 atomic regions from SNP 56225 to 56825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,215 DEBUG Processing 123/699 atomic regions from SNP 36630 to 37230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,248 DEBUG Processing 596/851 atomic regions from SNP 178563 to 179163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,254 DEBUG Processing 184/729 atomic regions from SNP 54905 to 55505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,404 DEBUG Processing 189/742 atomic regions from SNP 56525 to 57125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,473 DEBUG Processing 124/699 atomic regions from SNP 36930 to 37530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,493 DEBUG Processing 597/851 atomic regions from SNP 178863 to 179463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,494 DEBUG Processing 185/729 atomic regions from SNP 55205 to 55805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,632 DEBUG Processing 190/742 atomic regions from SNP 56825 to 57425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,723 DEBUG Processing 125/699 atomic regions from SNP 37230 to 37830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,724 DEBUG Processing 186/729 atomic regions from SNP 55505 to 56105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,737 DEBUG Processing 598/851 atomic regions from SNP 179163 to 179763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:44,854 DEBUG Processing 191/742 atomic regions from SNP 57125 to 57725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,939 DEBUG Processing 187/729 atomic regions from SNP 55805 to 56405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,950 DEBUG Processing 126/699 atomic regions from SNP 37530 to 38130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,982 DEBUG Processing 599/851 atomic regions from SNP 179463 to 180063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,079 DEBUG Processing 192/742 atomic regions from SNP 57425 to 58025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,152 DEBUG Processing 188/729 atomic regions from SNP 56105 to 56705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,177 DEBUG Processing 127/699 atomic regions from SNP 37830 to 38430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,226 DEBUG Processing 600/851 atomic regions from SNP 179763 to 180363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,306 DEBUG Processing 193/742 atomic regions from SNP 57725 to 58325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,371 DEBUG Processing 189/729 atomic regions from SNP 56405 to 57005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,405 DEBUG Processing 128/699 atomic regions from SNP 38130 to 38730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,473 DEBUG Processing 601/851 atomic regions from SNP 180063 to 180663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,537 DEBUG Processing 194/742 atomic regions from SNP 58025 to 58625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,591 DEBUG Processing 190/729 atomic regions from SNP 56705 to 57305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,630 DEBUG Processing 129/699 atomic regions from SNP 38430 to 39030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,718 DEBUG Processing 602/851 atomic regions from SNP 180363 to 180963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:45,770 DEBUG Processing 195/742 atomic regions from SNP 58325 to 58925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,813 DEBUG Processing 191/729 atomic regions from SNP 57005 to 57605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,854 DEBUG Processing 130/699 atomic regions from SNP 38730 to 39330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,963 DEBUG Processing 603/851 atomic regions from SNP 180663 to 181263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,002 DEBUG Processing 196/742 atomic regions from SNP 58625 to 59225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,029 DEBUG Processing 192/729 atomic regions from SNP 57305 to 57905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,074 DEBUG Processing 131/699 atomic regions from SNP 39030 to 39630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,213 DEBUG Processing 604/851 atomic regions from SNP 180963 to 181563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,237 DEBUG Processing 197/742 atomic regions from SNP 58925 to 59525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,247 DEBUG Processing 193/729 atomic regions from SNP 57605 to 58205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,297 DEBUG Processing 132/699 atomic regions from SNP 39330 to 39930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,462 DEBUG Processing 605/851 atomic regions from SNP 181263 to 181863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,468 DEBUG Processing 194/729 atomic regions from SNP 57905 to 58505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,472 DEBUG Processing 198/742 atomic regions from SNP 59225 to 59825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,522 DEBUG Processing 133/699 atomic regions from SNP 39630 to 40230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,692 DEBUG Processing 195/729 atomic regions from SNP 58205 to 58805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,705 DEBUG Processing 199/742 atomic regions from SNP 59525 to 60125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,718 DEBUG Processing 606/851 atomic regions from SNP 181563 to 182163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:46,753 DEBUG Processing 134/699 atomic regions from SNP 39930 to 40530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,913 DEBUG Processing 196/729 atomic regions from SNP 58505 to 59105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,939 DEBUG Processing 200/742 atomic regions from SNP 59825 to 60425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,970 DEBUG Processing 607/851 atomic regions from SNP 181863 to 182463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,007 DEBUG Processing 135/699 atomic regions from SNP 40230 to 40830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,132 DEBUG Processing 197/729 atomic regions from SNP 58805 to 59405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,171 DEBUG Processing 201/742 atomic regions from SNP 60125 to 60725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,220 DEBUG Processing 608/851 atomic regions from SNP 182163 to 182763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,257 DEBUG Processing 136/699 atomic regions from SNP 40530 to 41130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,347 DEBUG Processing 198/729 atomic regions from SNP 59105 to 59705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,397 DEBUG Processing 202/742 atomic regions from SNP 60425 to 61025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,469 DEBUG Processing 609/851 atomic regions from SNP 182463 to 183063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,496 DEBUG Processing 137/699 atomic regions from SNP 40830 to 41430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,560 DEBUG Processing 199/729 atomic regions from SNP 59405 to 60005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,624 DEBUG Processing 203/742 atomic regions from SNP 60725 to 61325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,720 DEBUG Processing 610/851 atomic regions from SNP 182763 to 183363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:47,729 DEBUG Processing 138/699 atomic regions from SNP 41130 to 41730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,778 DEBUG Processing 200/729 atomic regions from SNP 59705 to 60305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,854 DEBUG Processing 204/742 atomic regions from SNP 61025 to 61625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,961 DEBUG Processing 139/699 atomic regions from SNP 41430 to 42030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,975 DEBUG Processing 611/851 atomic regions from SNP 183063 to 183663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,000 DEBUG Processing 201/729 atomic regions from SNP 60005 to 60605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,085 DEBUG Processing 205/742 atomic regions from SNP 61325 to 61925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,213 DEBUG Processing 140/699 atomic regions from SNP 41730 to 42330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,215 DEBUG Processing 202/729 atomic regions from SNP 60305 to 60905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,219 DEBUG Processing 612/851 atomic regions from SNP 183363 to 183963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,311 DEBUG Processing 206/742 atomic regions from SNP 61625 to 62225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,427 DEBUG Processing 203/729 atomic regions from SNP 60605 to 61205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,451 DEBUG Processing 141/699 atomic regions from SNP 42030 to 42630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,465 DEBUG Processing 613/851 atomic regions from SNP 183663 to 184263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,536 DEBUG Processing 207/742 atomic regions from SNP 61925 to 62525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,656 DEBUG Processing 204/729 atomic regions from SNP 60905 to 61505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,686 DEBUG Processing 142/699 atomic regions from SNP 42330 to 42930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,714 DEBUG Processing 614/851 atomic regions from SNP 183963 to 184563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,763 DEBUG Processing 208/742 atomic regions from SNP 62225 to 62825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,873 DEBUG Processing 205/729 atomic regions from SNP 61205 to 61805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,913 DEBUG Processing 143/699 atomic regions from SNP 42630 to 43230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,961 DEBUG Processing 615/851 atomic regions from SNP 184263 to 184863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:48,990 DEBUG Processing 209/742 atomic regions from SNP 62525 to 63125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,084 DEBUG Processing 206/729 atomic regions from SNP 61505 to 62105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,129 DEBUG Processing 144/699 atomic regions from SNP 42930 to 43530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,199 DEBUG Processing 616/851 atomic regions from SNP 184563 to 185163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,211 DEBUG Processing 210/742 atomic regions from SNP 62825 to 63425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,293 DEBUG Processing 207/729 atomic regions from SNP 61805 to 62405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,341 DEBUG Processing 145/699 atomic regions from SNP 43230 to 43830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,432 DEBUG Processing 211/742 atomic regions from SNP 63125 to 63725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,440 DEBUG Processing 617/851 atomic regions from SNP 184863 to 185463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,502 DEBUG Processing 208/729 atomic regions from SNP 62105 to 62705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,555 DEBUG Processing 146/699 atomic regions from SNP 43530 to 44130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,674 DEBUG Processing 212/742 atomic regions from SNP 63425 to 64025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,689 DEBUG Processing 618/851 atomic regions from SNP 185163 to 185763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,722 DEBUG Processing 209/729 atomic regions from SNP 62405 to 63005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,779 DEBUG Processing 147/699 atomic regions from SNP 43830 to 44430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,908 DEBUG Processing 213/742 atomic regions from SNP 63725 to 64325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,936 DEBUG Processing 619/851 atomic regions from SNP 185463 to 186063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:49,939 DEBUG Processing 210/729 atomic regions from SNP 62705 to 63305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,002 DEBUG Processing 148/699 atomic regions from SNP 44130 to 44730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,140 DEBUG Processing 214/742 atomic regions from SNP 64025 to 64625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,157 DEBUG Processing 211/729 atomic regions from SNP 63005 to 63605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,180 DEBUG Processing 620/851 atomic regions from SNP 185763 to 186363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,227 DEBUG Processing 149/699 atomic regions from SNP 44430 to 45030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,372 DEBUG Processing 212/729 atomic regions from SNP 63305 to 63905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,389 DEBUG Processing 215/742 atomic regions from SNP 64325 to 64925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,420 DEBUG Processing 621/851 atomic regions from SNP 186063 to 186663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,448 DEBUG Processing 150/699 atomic regions from SNP 44730 to 45330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,588 DEBUG Processing 213/729 atomic regions from SNP 63605 to 64205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,643 DEBUG Processing 216/742 atomic regions from SNP 64625 to 65225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,661 DEBUG Processing 622/851 atomic regions from SNP 186363 to 186963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:50,677 DEBUG Processing 151/699 atomic regions from SNP 45030 to 45630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,805 DEBUG Processing 214/729 atomic regions from SNP 63905 to 64505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,874 DEBUG Processing 217/742 atomic regions from SNP 64925 to 65525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,900 DEBUG Processing 152/699 atomic regions from SNP 45330 to 45930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,903 DEBUG Processing 623/851 atomic regions from SNP 186663 to 187263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,020 DEBUG Processing 215/729 atomic regions from SNP 64205 to 64805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,094 DEBUG Processing 218/742 atomic regions from SNP 65225 to 65825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,124 DEBUG Processing 153/699 atomic regions from SNP 45630 to 46230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,148 DEBUG Processing 624/851 atomic regions from SNP 186963 to 187563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,244 DEBUG Processing 216/729 atomic regions from SNP 64505 to 65105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,324 DEBUG Processing 219/742 atomic regions from SNP 65525 to 66125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,346 DEBUG Processing 154/699 atomic regions from SNP 45930 to 46530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,392 DEBUG Processing 625/851 atomic regions from SNP 187263 to 187863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,462 DEBUG Processing 217/729 atomic regions from SNP 64805 to 65405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,550 DEBUG Processing 220/742 atomic regions from SNP 65825 to 66425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,569 DEBUG Processing 155/699 atomic regions from SNP 46230 to 46830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,641 DEBUG Processing 626/851 atomic regions from SNP 187563 to 188163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,683 DEBUG Processing 218/729 atomic regions from SNP 65105 to 65705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,768 DEBUG Processing 221/742 atomic regions from SNP 66125 to 66725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,790 DEBUG Processing 156/699 atomic regions from SNP 46530 to 47130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,885 DEBUG Processing 627/851 atomic regions from SNP 187863 to 188463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:51,902 DEBUG Processing 219/729 atomic regions from SNP 65405 to 66005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,995 DEBUG Processing 222/742 atomic regions from SNP 66425 to 67025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,009 DEBUG Processing 157/699 atomic regions from SNP 46830 to 47430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,124 DEBUG Processing 220/729 atomic regions from SNP 65705 to 66305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,129 DEBUG Processing 628/851 atomic regions from SNP 188163 to 188763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,230 DEBUG Processing 158/699 atomic regions from SNP 47130 to 47730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,243 DEBUG Processing 223/742 atomic regions from SNP 66725 to 67325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,345 DEBUG Processing 221/729 atomic regions from SNP 66005 to 66605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,371 DEBUG Processing 629/851 atomic regions from SNP 188463 to 189063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,455 DEBUG Processing 159/699 atomic regions from SNP 47430 to 48030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,485 DEBUG Processing 224/742 atomic regions from SNP 67025 to 67625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,570 DEBUG Processing 222/729 atomic regions from SNP 66305 to 66905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,613 DEBUG Processing 630/851 atomic regions from SNP 188763 to 189363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,681 DEBUG Processing 160/699 atomic regions from SNP 47730 to 48330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,724 DEBUG Processing 225/742 atomic regions from SNP 67325 to 67925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,796 DEBUG Processing 223/729 atomic regions from SNP 66605 to 67205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,856 DEBUG Processing 631/851 atomic regions from SNP 189063 to 189663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:52,913 DEBUG Processing 161/699 atomic regions from SNP 48030 to 48630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,972 DEBUG Processing 226/742 atomic regions from SNP 67625 to 68225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,024 DEBUG Processing 224/729 atomic regions from SNP 66905 to 67505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,098 DEBUG Processing 632/851 atomic regions from SNP 189363 to 189963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,141 DEBUG Processing 162/699 atomic regions from SNP 48330 to 48930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,219 DEBUG Processing 227/742 atomic regions from SNP 67925 to 68525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,253 DEBUG Processing 225/729 atomic regions from SNP 67205 to 67805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,341 DEBUG Processing 633/851 atomic regions from SNP 189663 to 190263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,363 DEBUG Processing 163/699 atomic regions from SNP 48630 to 49230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,482 DEBUG Processing 228/742 atomic regions from SNP 68225 to 68825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,487 DEBUG Processing 226/729 atomic regions from SNP 67505 to 68105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,587 DEBUG Processing 634/851 atomic regions from SNP 189963 to 190563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,589 DEBUG Processing 164/699 atomic regions from SNP 48930 to 49530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,721 DEBUG Processing 227/729 atomic regions from SNP 67805 to 68405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,737 DEBUG Processing 229/742 atomic regions from SNP 68525 to 69125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,813 DEBUG Processing 165/699 atomic regions from SNP 49230 to 49830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,830 DEBUG Processing 635/851 atomic regions from SNP 190263 to 190863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:53,950 DEBUG Processing 228/729 atomic regions from SNP 68105 to 68705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,999 DEBUG Processing 230/742 atomic regions from SNP 68825 to 69425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,038 DEBUG Processing 166/699 atomic regions from SNP 49530 to 50130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,075 DEBUG Processing 636/851 atomic regions from SNP 190563 to 191163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,176 DEBUG Processing 229/729 atomic regions from SNP 68405 to 69005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,239 DEBUG Processing 231/742 atomic regions from SNP 69125 to 69725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,263 DEBUG Processing 167/699 atomic regions from SNP 49830 to 50430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,320 DEBUG Processing 637/851 atomic regions from SNP 190863 to 191463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,401 DEBUG Processing 230/729 atomic regions from SNP 68705 to 69305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,466 DEBUG Processing 232/742 atomic regions from SNP 69425 to 70025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,486 DEBUG Processing 168/699 atomic regions from SNP 50130 to 50730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,581 DEBUG Processing 638/851 atomic regions from SNP 191163 to 191763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,628 DEBUG Processing 231/729 atomic regions from SNP 69005 to 69605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,692 DEBUG Processing 233/742 atomic regions from SNP 69725 to 70325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,717 DEBUG Processing 169/699 atomic regions from SNP 50430 to 51030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,854 DEBUG Processing 639/851 atomic regions from SNP 191463 to 192063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:54,859 DEBUG Processing 232/729 atomic regions from SNP 69305 to 69905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,914 DEBUG Processing 234/742 atomic regions from SNP 70025 to 70625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,943 DEBUG Processing 170/699 atomic regions from SNP 50730 to 51330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,090 DEBUG Processing 233/729 atomic regions from SNP 69605 to 70205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,122 DEBUG Processing 640/851 atomic regions from SNP 191763 to 192363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,158 DEBUG Processing 235/742 atomic regions from SNP 70325 to 70925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,170 DEBUG Processing 171/699 atomic regions from SNP 51030 to 51630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,314 DEBUG Processing 234/729 atomic regions from SNP 69905 to 70505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,393 DEBUG Processing 641/851 atomic regions from SNP 192063 to 192663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,395 DEBUG Processing 172/699 atomic regions from SNP 51330 to 51930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,418 DEBUG Processing 236/742 atomic regions from SNP 70625 to 71225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,534 DEBUG Processing 235/729 atomic regions from SNP 70205 to 70805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,622 DEBUG Processing 173/699 atomic regions from SNP 51630 to 52230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,681 DEBUG Processing 237/742 atomic regions from SNP 70925 to 71525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,684 DEBUG Processing 642/851 atomic regions from SNP 192363 to 192963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,754 DEBUG Processing 236/729 atomic regions from SNP 70505 to 71105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,865 DEBUG Processing 174/699 atomic regions from SNP 51930 to 52530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,920 DEBUG Processing 238/742 atomic regions from SNP 71225 to 71825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,970 DEBUG Processing 643/851 atomic regions from SNP 192663 to 193263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:55,977 DEBUG Processing 237/729 atomic regions from SNP 70805 to 71405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,116 DEBUG Processing 175/699 atomic regions from SNP 52230 to 52830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,159 DEBUG Processing 239/742 atomic regions from SNP 71525 to 72125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,198 DEBUG Processing 238/729 atomic regions from SNP 71105 to 71705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,239 DEBUG Processing 644/851 atomic regions from SNP 192963 to 193563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,343 DEBUG Processing 176/699 atomic regions from SNP 52530 to 53130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,386 DEBUG Processing 240/742 atomic regions from SNP 71825 to 72425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,421 DEBUG Processing 239/729 atomic regions from SNP 71405 to 72005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,476 DEBUG Processing 645/851 atomic regions from SNP 193263 to 193863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,568 DEBUG Processing 177/699 atomic regions from SNP 52830 to 53430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,611 DEBUG Processing 241/742 atomic regions from SNP 72125 to 72725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,651 DEBUG Processing 240/729 atomic regions from SNP 71705 to 72305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,714 DEBUG Processing 646/851 atomic regions from SNP 193563 to 194163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:56,799 DEBUG Processing 178/699 atomic regions from SNP 53130 to 53730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,844 DEBUG Processing 242/742 atomic regions from SNP 72425 to 73025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,886 DEBUG Processing 241/729 atomic regions from SNP 72005 to 72605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,950 DEBUG Processing 647/851 atomic regions from SNP 193863 to 194463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,024 DEBUG Processing 179/699 atomic regions from SNP 53430 to 54030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,067 DEBUG Processing 243/742 atomic regions from SNP 72725 to 73325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,127 DEBUG Processing 242/729 atomic regions from SNP 72305 to 72905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,189 DEBUG Processing 648/851 atomic regions from SNP 194163 to 194763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,250 DEBUG Processing 180/699 atomic regions from SNP 53730 to 54330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,291 DEBUG Processing 244/742 atomic regions from SNP 73025 to 73625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,349 DEBUG Processing 243/729 atomic regions from SNP 72605 to 73205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,429 DEBUG Processing 649/851 atomic regions from SNP 194463 to 195063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,477 DEBUG Processing 181/699 atomic regions from SNP 54030 to 54630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,513 DEBUG Processing 245/742 atomic regions from SNP 73325 to 73925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,583 DEBUG Processing 244/729 atomic regions from SNP 72905 to 73505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,692 DEBUG Processing 650/851 atomic regions from SNP 194763 to 195363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,698 DEBUG Processing 182/699 atomic regions from SNP 54330 to 54930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,741 DEBUG Processing 246/742 atomic regions from SNP 73625 to 74225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,820 DEBUG Processing 245/729 atomic regions from SNP 73205 to 73805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,918 DEBUG Processing 183/699 atomic regions from SNP 54630 to 55230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,949 DEBUG Processing 651/851 atomic regions from SNP 195063 to 195663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:57,961 DEBUG Processing 247/742 atomic regions from SNP 73925 to 74525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,047 DEBUG Processing 246/729 atomic regions from SNP 73505 to 74105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,136 DEBUG Processing 184/699 atomic regions from SNP 54930 to 55530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,185 DEBUG Processing 248/742 atomic regions from SNP 74225 to 74825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,188 DEBUG Processing 652/851 atomic regions from SNP 195363 to 195963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,271 DEBUG Processing 247/729 atomic regions from SNP 73805 to 74405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,351 DEBUG Processing 185/699 atomic regions from SNP 55230 to 55830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,412 DEBUG Processing 249/742 atomic regions from SNP 74525 to 75125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,431 DEBUG Processing 653/851 atomic regions from SNP 195663 to 196263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,495 DEBUG Processing 248/729 atomic regions from SNP 74105 to 74705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,568 DEBUG Processing 186/699 atomic regions from SNP 55530 to 56130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,639 DEBUG Processing 250/742 atomic regions from SNP 74825 to 75425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,694 DEBUG Processing 654/851 atomic regions from SNP 195963 to 196563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:58,725 DEBUG Processing 249/729 atomic regions from SNP 74405 to 75005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,788 DEBUG Processing 187/699 atomic regions from SNP 55830 to 56430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,862 DEBUG Processing 251/742 atomic regions from SNP 75125 to 75725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,946 DEBUG Processing 250/729 atomic regions from SNP 74705 to 75305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,962 DEBUG Processing 655/851 atomic regions from SNP 196263 to 196863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,011 DEBUG Processing 188/699 atomic regions from SNP 56130 to 56730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,084 DEBUG Processing 252/742 atomic regions from SNP 75425 to 76025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,187 DEBUG Processing 251/729 atomic regions from SNP 75005 to 75605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,239 DEBUG Processing 189/699 atomic regions from SNP 56430 to 57030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,245 DEBUG Processing 656/851 atomic regions from SNP 196563 to 197163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,305 DEBUG Processing 253/742 atomic regions from SNP 75725 to 76325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,404 DEBUG Processing 252/729 atomic regions from SNP 75305 to 75905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,464 DEBUG Processing 190/699 atomic regions from SNP 56730 to 57330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,522 DEBUG Processing 657/851 atomic regions from SNP 196863 to 197463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,535 DEBUG Processing 254/742 atomic regions from SNP 76025 to 76625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,624 DEBUG Processing 253/729 atomic regions from SNP 75605 to 76205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,693 DEBUG Processing 191/699 atomic regions from SNP 57030 to 57630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,769 DEBUG Processing 255/742 atomic regions from SNP 76325 to 76925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,784 DEBUG Processing 658/851 atomic regions from SNP 197163 to 197763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:59,843 DEBUG Processing 254/729 atomic regions from SNP 75905 to 76505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,916 DEBUG Processing 192/699 atomic regions from SNP 57330 to 57930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,002 DEBUG Processing 256/742 atomic regions from SNP 76625 to 77225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,045 DEBUG Processing 659/851 atomic regions from SNP 197463 to 198063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,063 DEBUG Processing 255/729 atomic regions from SNP 76205 to 76805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,146 DEBUG Processing 193/699 atomic regions from SNP 57630 to 58230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,235 DEBUG Processing 257/742 atomic regions from SNP 76925 to 77525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,277 DEBUG Processing 256/729 atomic regions from SNP 76505 to 77105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,285 DEBUG Processing 660/851 atomic regions from SNP 197763 to 198363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,371 DEBUG Processing 194/699 atomic regions from SNP 57930 to 58530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,462 DEBUG Processing 258/742 atomic regions from SNP 77225 to 77825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,490 DEBUG Processing 257/729 atomic regions from SNP 76805 to 77405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,531 DEBUG Processing 661/851 atomic regions from SNP 198063 to 198663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,599 DEBUG Processing 195/699 atomic regions from SNP 58230 to 58830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,684 DEBUG Processing 259/742 atomic regions from SNP 77525 to 78125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,705 DEBUG Processing 258/729 atomic regions from SNP 77105 to 77705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,776 DEBUG Processing 662/851 atomic regions from SNP 198363 to 198963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:00,831 DEBUG Processing 196/699 atomic regions from SNP 58530 to 59130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,904 DEBUG Processing 260/742 atomic regions from SNP 77825 to 78425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,919 DEBUG Processing 259/729 atomic regions from SNP 77405 to 78005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,026 DEBUG Processing 663/851 atomic regions from SNP 198663 to 199263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,060 DEBUG Processing 197/699 atomic regions from SNP 58830 to 59430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,124 DEBUG Processing 261/742 atomic regions from SNP 78125 to 78725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,133 DEBUG Processing 260/729 atomic regions from SNP 77705 to 78305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,271 DEBUG Processing 664/851 atomic regions from SNP 198963 to 199563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,288 DEBUG Processing 198/699 atomic regions from SNP 59130 to 59730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,347 DEBUG Processing 262/742 atomic regions from SNP 78425 to 79025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,348 DEBUG Processing 261/729 atomic regions from SNP 78005 to 78605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,521 DEBUG Processing 665/851 atomic regions from SNP 199263 to 199863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,522 DEBUG Processing 199/699 atomic regions from SNP 59430 to 60030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,568 DEBUG Processing 262/729 atomic regions from SNP 78305 to 78905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,578 DEBUG Processing 263/742 atomic regions from SNP 78725 to 79325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,754 DEBUG Processing 200/699 atomic regions from SNP 59730 to 60330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,771 DEBUG Processing 666/851 atomic regions from SNP 199563 to 200163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:01,788 DEBUG Processing 263/729 atomic regions from SNP 78605 to 79205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,816 DEBUG Processing 264/742 atomic regions from SNP 79025 to 79625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,986 DEBUG Processing 201/699 atomic regions from SNP 60030 to 60630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,007 DEBUG Processing 264/729 atomic regions from SNP 78905 to 79505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,025 DEBUG Processing 667/851 atomic regions from SNP 199863 to 200463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,060 DEBUG Processing 265/742 atomic regions from SNP 79325 to 79925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,214 DEBUG Processing 202/699 atomic regions from SNP 60330 to 60930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,227 DEBUG Processing 265/729 atomic regions from SNP 79205 to 79805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,300 DEBUG Processing 266/742 atomic regions from SNP 79625 to 80225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,311 DEBUG Processing 668/851 atomic regions from SNP 200163 to 200763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,442 DEBUG Processing 203/699 atomic regions from SNP 60630 to 61230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,449 DEBUG Processing 266/729 atomic regions from SNP 79505 to 80105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,538 DEBUG Processing 267/742 atomic regions from SNP 79925 to 80525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,585 DEBUG Processing 669/851 atomic regions from SNP 200463 to 201063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,668 DEBUG Processing 204/699 atomic regions from SNP 60930 to 61530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,670 DEBUG Processing 267/729 atomic regions from SNP 79805 to 80405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,770 DEBUG Processing 268/742 atomic regions from SNP 80225 to 80825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,845 DEBUG Processing 670/851 atomic regions from SNP 200763 to 201363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:02,887 DEBUG Processing 268/729 atomic regions from SNP 80105 to 80705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,891 DEBUG Processing 205/699 atomic regions from SNP 61230 to 61830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,991 DEBUG Processing 269/742 atomic regions from SNP 80525 to 81125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,085 DEBUG Processing 671/851 atomic regions from SNP 201063 to 201663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,108 DEBUG Processing 269/729 atomic regions from SNP 80405 to 81005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,112 DEBUG Processing 206/699 atomic regions from SNP 61530 to 62130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,212 DEBUG Processing 270/742 atomic regions from SNP 80825 to 81425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,322 DEBUG Processing 672/851 atomic regions from SNP 201363 to 201963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,330 DEBUG Processing 270/729 atomic regions from SNP 80705 to 81305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,333 DEBUG Processing 207/699 atomic regions from SNP 61830 to 62430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,433 DEBUG Processing 271/742 atomic regions from SNP 81125 to 81725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,549 DEBUG Processing 271/729 atomic regions from SNP 81005 to 81605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,555 DEBUG Processing 208/699 atomic regions from SNP 62130 to 62730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,559 DEBUG Processing 673/851 atomic regions from SNP 201663 to 202263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,657 DEBUG Processing 272/742 atomic regions from SNP 81425 to 82025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,763 DEBUG Processing 272/729 atomic regions from SNP 81305 to 81905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,771 DEBUG Processing 209/699 atomic regions from SNP 62430 to 63030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,797 DEBUG Processing 674/851 atomic regions from SNP 201963 to 202563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:03,883 DEBUG Processing 273/742 atomic regions from SNP 81725 to 82325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,977 DEBUG Processing 273/729 atomic regions from SNP 81605 to 82205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,988 DEBUG Processing 210/699 atomic regions from SNP 62730 to 63330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,039 DEBUG Processing 675/851 atomic regions from SNP 202263 to 202863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,111 DEBUG Processing 274/742 atomic regions from SNP 82025 to 82625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,194 DEBUG Processing 274/729 atomic regions from SNP 81905 to 82505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,208 DEBUG Processing 211/699 atomic regions from SNP 63030 to 63630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,289 DEBUG Processing 676/851 atomic regions from SNP 202563 to 203163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,333 DEBUG Processing 275/742 atomic regions from SNP 82325 to 82925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,415 DEBUG Processing 275/729 atomic regions from SNP 82205 to 82805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,428 DEBUG Processing 212/699 atomic regions from SNP 63330 to 63930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,556 DEBUG Processing 276/742 atomic regions from SNP 82625 to 83225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,561 DEBUG Processing 677/851 atomic regions from SNP 202863 to 203463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,638 DEBUG Processing 276/729 atomic regions from SNP 82505 to 83105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,651 DEBUG Processing 213/699 atomic regions from SNP 63630 to 64230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,777 DEBUG Processing 277/742 atomic regions from SNP 82925 to 83525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,837 DEBUG Processing 678/851 atomic regions from SNP 203163 to 203763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:04,857 DEBUG Processing 277/729 atomic regions from SNP 82805 to 83405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,877 DEBUG Processing 214/699 atomic regions from SNP 63930 to 64530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,995 DEBUG Processing 278/742 atomic regions from SNP 83225 to 83825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,079 DEBUG Processing 278/729 atomic regions from SNP 83105 to 83705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,098 DEBUG Processing 679/851 atomic regions from SNP 203463 to 204063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,123 DEBUG Processing 215/699 atomic regions from SNP 64230 to 64830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,217 DEBUG Processing 279/742 atomic regions from SNP 83525 to 84125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,303 DEBUG Processing 279/729 atomic regions from SNP 83405 to 84005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,343 DEBUG Processing 680/851 atomic regions from SNP 203763 to 204363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,386 DEBUG Processing 216/699 atomic regions from SNP 64530 to 65130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,435 DEBUG Processing 280/742 atomic regions from SNP 83825 to 84425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,525 DEBUG Processing 280/729 atomic regions from SNP 83705 to 84305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,599 DEBUG Processing 681/851 atomic regions from SNP 204063 to 204663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,628 DEBUG Processing 217/699 atomic regions from SNP 64830 to 65430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,662 DEBUG Processing 281/742 atomic regions from SNP 84125 to 84725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,746 DEBUG Processing 281/729 atomic regions from SNP 84005 to 84605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,863 DEBUG Processing 218/699 atomic regions from SNP 65130 to 65730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,889 DEBUG Processing 682/851 atomic regions from SNP 204363 to 204963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:05,897 DEBUG Processing 282/742 atomic regions from SNP 84425 to 85025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,966 DEBUG Processing 282/729 atomic regions from SNP 84305 to 84905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,089 DEBUG Processing 219/699 atomic regions from SNP 65430 to 66030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,127 DEBUG Processing 283/742 atomic regions from SNP 84725 to 85325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,167 DEBUG Processing 683/851 atomic regions from SNP 204663 to 205263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,185 DEBUG Processing 283/729 atomic regions from SNP 84605 to 85205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,308 DEBUG Processing 220/699 atomic regions from SNP 65730 to 66330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,351 DEBUG Processing 284/742 atomic regions from SNP 85025 to 85625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,404 DEBUG Processing 284/729 atomic regions from SNP 84905 to 85505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,421 DEBUG Processing 684/851 atomic regions from SNP 204963 to 205563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,525 DEBUG Processing 221/699 atomic regions from SNP 66030 to 66630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,574 DEBUG Processing 285/742 atomic regions from SNP 85325 to 85925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,620 DEBUG Processing 285/729 atomic regions from SNP 85205 to 85805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,696 DEBUG Processing 685/851 atomic regions from SNP 205263 to 205863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:06,744 DEBUG Processing 222/699 atomic regions from SNP 66330 to 66930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,793 DEBUG Processing 286/742 atomic regions from SNP 85625 to 86225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,835 DEBUG Processing 286/729 atomic regions from SNP 85505 to 86105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,965 DEBUG Processing 223/699 atomic regions from SNP 66630 to 67230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,966 DEBUG Processing 686/851 atomic regions from SNP 205563 to 206163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,008 DEBUG Processing 287/742 atomic regions from SNP 85925 to 86525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,048 DEBUG Processing 287/729 atomic regions from SNP 85805 to 86405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,187 DEBUG Processing 224/699 atomic regions from SNP 66930 to 67530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,229 DEBUG Processing 288/742 atomic regions from SNP 86225 to 86825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,244 DEBUG Processing 687/851 atomic regions from SNP 205863 to 206463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,264 DEBUG Processing 288/729 atomic regions from SNP 86105 to 86705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,408 DEBUG Processing 225/699 atomic regions from SNP 67230 to 67830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,451 DEBUG Processing 289/742 atomic regions from SNP 86525 to 87125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,485 DEBUG Processing 289/729 atomic regions from SNP 86405 to 87005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,520 DEBUG Processing 688/851 atomic regions from SNP 206163 to 206763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,628 DEBUG Processing 226/699 atomic regions from SNP 67530 to 68130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,679 DEBUG Processing 290/742 atomic regions from SNP 86825 to 87425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,713 DEBUG Processing 290/729 atomic regions from SNP 86705 to 87305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,789 DEBUG Processing 689/851 atomic regions from SNP 206463 to 207063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:07,847 DEBUG Processing 227/699 atomic regions from SNP 67830 to 68430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,905 DEBUG Processing 291/742 atomic regions from SNP 87125 to 87725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,942 DEBUG Processing 291/729 atomic regions from SNP 87005 to 87605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,047 DEBUG Processing 690/851 atomic regions from SNP 206763 to 207363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,096 DEBUG Processing 228/699 atomic regions from SNP 68130 to 68730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,134 DEBUG Processing 292/742 atomic regions from SNP 87425 to 88025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,171 DEBUG Processing 292/729 atomic regions from SNP 87305 to 87905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,291 DEBUG Processing 691/851 atomic regions from SNP 207063 to 207663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,348 DEBUG Processing 229/699 atomic regions from SNP 68430 to 69030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,357 DEBUG Processing 293/742 atomic regions from SNP 87725 to 88325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,397 DEBUG Processing 293/729 atomic regions from SNP 87605 to 88205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,535 DEBUG Processing 692/851 atomic regions from SNP 207363 to 207963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,570 DEBUG Processing 230/699 atomic regions from SNP 68730 to 69330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,577 DEBUG Processing 294/742 atomic regions from SNP 88025 to 88625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,619 DEBUG Processing 294/729 atomic regions from SNP 87905 to 88505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,781 DEBUG Processing 693/851 atomic regions from SNP 207663 to 208263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:08,799 DEBUG Processing 231/699 atomic regions from SNP 69030 to 69630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,803 DEBUG Processing 295/742 atomic regions from SNP 88325 to 88925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,856 DEBUG Processing 295/729 atomic regions from SNP 88205 to 88805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,025 DEBUG Processing 694/851 atomic regions from SNP 207963 to 208563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,029 DEBUG Processing 232/699 atomic regions from SNP 69330 to 69930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,035 DEBUG Processing 296/742 atomic regions from SNP 88625 to 89225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,084 DEBUG Processing 296/729 atomic regions from SNP 88505 to 89105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,266 DEBUG Processing 233/699 atomic regions from SNP 69630 to 70230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,275 DEBUG Processing 297/742 atomic regions from SNP 88925 to 89525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,310 DEBUG Processing 695/851 atomic regions from SNP 208263 to 208863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,316 DEBUG Processing 297/729 atomic regions from SNP 88805 to 89405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,502 DEBUG Processing 234/699 atomic regions from SNP 69930 to 70530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,516 DEBUG Processing 298/742 atomic regions from SNP 89225 to 89825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,549 DEBUG Processing 298/729 atomic regions from SNP 89105 to 89705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,571 DEBUG Processing 696/851 atomic regions from SNP 208563 to 209163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,745 DEBUG Processing 299/742 atomic regions from SNP 89525 to 90125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,753 DEBUG Processing 235/699 atomic regions from SNP 70230 to 70830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,783 DEBUG Processing 299/729 atomic regions from SNP 89405 to 90005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,839 DEBUG Processing 697/851 atomic regions from SNP 208863 to 209463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:09,977 DEBUG Processing 300/742 atomic regions from SNP 89825 to 90425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,992 DEBUG Processing 236/699 atomic regions from SNP 70530 to 71130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,011 DEBUG Processing 300/729 atomic regions from SNP 89705 to 90305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,113 DEBUG Processing 698/851 atomic regions from SNP 209163 to 209763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,203 DEBUG Processing 301/742 atomic regions from SNP 90125 to 90725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,234 DEBUG Processing 237/699 atomic regions from SNP 70830 to 71430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,251 DEBUG Processing 301/729 atomic regions from SNP 90005 to 90605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,374 DEBUG Processing 699/851 atomic regions from SNP 209463 to 210063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,432 DEBUG Processing 302/742 atomic regions from SNP 90425 to 91025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,465 DEBUG Processing 238/699 atomic regions from SNP 71130 to 71730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,477 DEBUG Processing 302/729 atomic regions from SNP 90305 to 90905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,620 DEBUG Processing 700/851 atomic regions from SNP 209763 to 210363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,665 DEBUG Processing 303/742 atomic regions from SNP 90725 to 91325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,704 DEBUG Processing 303/729 atomic regions from SNP 90605 to 91205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,708 DEBUG Processing 239/699 atomic regions from SNP 71430 to 72030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,866 DEBUG Processing 701/851 atomic regions from SNP 210063 to 210663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:10,898 DEBUG Processing 304/742 atomic regions from SNP 91025 to 91625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,936 DEBUG Processing 304/729 atomic regions from SNP 90905 to 91505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,962 DEBUG Processing 240/699 atomic regions from SNP 71730 to 72330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,108 DEBUG Processing 702/851 atomic regions from SNP 210363 to 210963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,128 DEBUG Processing 305/742 atomic regions from SNP 91325 to 91925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,198 DEBUG Processing 305/729 atomic regions from SNP 91205 to 91805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,203 DEBUG Processing 241/699 atomic regions from SNP 72030 to 72630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,351 DEBUG Processing 703/851 atomic regions from SNP 210663 to 211263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,359 DEBUG Processing 306/742 atomic regions from SNP 91625 to 92225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,429 DEBUG Processing 306/729 atomic regions from SNP 91505 to 92105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,437 DEBUG Processing 242/699 atomic regions from SNP 72330 to 72930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,589 DEBUG Processing 307/742 atomic regions from SNP 91925 to 92525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,601 DEBUG Processing 704/851 atomic regions from SNP 210963 to 211563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,663 DEBUG Processing 307/729 atomic regions from SNP 91805 to 92405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,674 DEBUG Processing 243/699 atomic regions from SNP 72630 to 73230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,823 DEBUG Processing 308/742 atomic regions from SNP 92225 to 92825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,871 DEBUG Processing 705/851 atomic regions from SNP 211263 to 211863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:11,895 DEBUG Processing 308/729 atomic regions from SNP 92105 to 92705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,907 DEBUG Processing 244/699 atomic regions from SNP 72930 to 73530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,049 DEBUG Processing 309/742 atomic regions from SNP 92525 to 93125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,126 DEBUG Processing 309/729 atomic regions from SNP 92405 to 93005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,142 DEBUG Processing 245/699 atomic regions from SNP 73230 to 73830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,142 DEBUG Processing 706/851 atomic regions from SNP 211563 to 212163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,269 DEBUG Processing 310/742 atomic regions from SNP 92825 to 93425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,353 DEBUG Processing 310/729 atomic regions from SNP 92705 to 93305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,373 DEBUG Processing 246/699 atomic regions from SNP 73530 to 74130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,422 DEBUG Processing 707/851 atomic regions from SNP 211863 to 212463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,493 DEBUG Processing 311/742 atomic regions from SNP 93125 to 93725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,579 DEBUG Processing 311/729 atomic regions from SNP 93005 to 93605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,605 DEBUG Processing 247/699 atomic regions from SNP 73830 to 74430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,705 DEBUG Processing 708/851 atomic regions from SNP 212163 to 212763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:12,714 DEBUG Processing 312/742 atomic regions from SNP 93425 to 94025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,802 DEBUG Processing 312/729 atomic regions from SNP 93305 to 93905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,828 DEBUG Processing 248/699 atomic regions from SNP 74130 to 74730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,938 DEBUG Processing 313/742 atomic regions from SNP 93725 to 94325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,984 DEBUG Processing 709/851 atomic regions from SNP 212463 to 213063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,026 DEBUG Processing 313/729 atomic regions from SNP 93605 to 94205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,052 DEBUG Processing 249/699 atomic regions from SNP 74430 to 75030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,162 DEBUG Processing 314/742 atomic regions from SNP 94025 to 94625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,247 DEBUG Processing 314/729 atomic regions from SNP 93905 to 94505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,257 DEBUG Processing 710/851 atomic regions from SNP 212763 to 213363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,275 DEBUG Processing 250/699 atomic regions from SNP 74730 to 75330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,386 DEBUG Processing 315/742 atomic regions from SNP 94325 to 94925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,468 DEBUG Processing 315/729 atomic regions from SNP 94205 to 94805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,498 DEBUG Processing 251/699 atomic regions from SNP 75030 to 75630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,521 DEBUG Processing 711/851 atomic regions from SNP 213063 to 213663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,612 DEBUG Processing 316/742 atomic regions from SNP 94625 to 95225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,706 DEBUG Processing 316/729 atomic regions from SNP 94505 to 95105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,721 DEBUG Processing 252/699 atomic regions from SNP 75330 to 75930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,789 DEBUG Processing 712/851 atomic regions from SNP 213363 to 213963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:13,859 DEBUG Processing 317/742 atomic regions from SNP 94925 to 95525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,929 DEBUG Processing 317/729 atomic regions from SNP 94805 to 95405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,940 DEBUG Processing 253/699 atomic regions from SNP 75630 to 76230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,050 DEBUG Processing 713/851 atomic regions from SNP 213663 to 214263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,106 DEBUG Processing 318/742 atomic regions from SNP 95225 to 95825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,149 DEBUG Processing 318/729 atomic regions from SNP 95105 to 95705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,159 DEBUG Processing 254/699 atomic regions from SNP 75930 to 76530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,295 DEBUG Processing 714/851 atomic regions from SNP 213963 to 214563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,335 DEBUG Processing 319/742 atomic regions from SNP 95525 to 96125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,372 DEBUG Processing 319/729 atomic regions from SNP 95405 to 96005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,383 DEBUG Processing 255/699 atomic regions from SNP 76230 to 76830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,537 DEBUG Processing 715/851 atomic regions from SNP 214263 to 214863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,568 DEBUG Processing 320/742 atomic regions from SNP 95825 to 96425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,594 DEBUG Processing 320/729 atomic regions from SNP 95705 to 96305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,607 DEBUG Processing 256/699 atomic regions from SNP 76530 to 77130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,783 DEBUG Processing 716/851 atomic regions from SNP 214563 to 215163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:14,798 DEBUG Processing 321/742 atomic regions from SNP 96125 to 96725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,814 DEBUG Processing 321/729 atomic regions from SNP 96005 to 96605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,834 DEBUG Processing 257/699 atomic regions from SNP 76830 to 77430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,028 DEBUG Processing 322/742 atomic regions from SNP 96425 to 97025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,028 DEBUG Processing 717/851 atomic regions from SNP 214863 to 215463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,034 DEBUG Processing 322/729 atomic regions from SNP 96305 to 96905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,060 DEBUG Processing 258/699 atomic regions from SNP 77130 to 77730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,254 DEBUG Processing 323/729 atomic regions from SNP 96605 to 97205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,274 DEBUG Processing 718/851 atomic regions from SNP 215163 to 215763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,275 DEBUG Processing 323/742 atomic regions from SNP 96725 to 97325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,287 DEBUG Processing 259/699 atomic regions from SNP 77430 to 78030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,512 DEBUG Processing 324/729 atomic regions from SNP 96905 to 97505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,520 DEBUG Processing 260/699 atomic regions from SNP 77730 to 78330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,522 DEBUG Processing 324/742 atomic regions from SNP 97025 to 97625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,525 DEBUG Processing 719/851 atomic regions from SNP 215463 to 216063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,749 DEBUG Processing 261/699 atomic regions from SNP 78030 to 78630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,751 DEBUG Processing 325/729 atomic regions from SNP 97205 to 97805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,753 DEBUG Processing 325/742 atomic regions from SNP 97325 to 97925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,774 DEBUG Processing 720/851 atomic regions from SNP 215763 to 216363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:15,978 DEBUG Processing 262/699 atomic regions from SNP 78330 to 78930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,980 DEBUG Processing 326/729 atomic regions from SNP 97505 to 98105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,992 DEBUG Processing 326/742 atomic regions from SNP 97625 to 98225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,025 DEBUG Processing 721/851 atomic regions from SNP 216063 to 216663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,222 DEBUG Processing 263/699 atomic regions from SNP 78630 to 79230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,226 DEBUG Processing 327/729 atomic regions from SNP 97805 to 98405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,265 DEBUG Processing 327/742 atomic regions from SNP 97925 to 98525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,280 DEBUG Processing 722/851 atomic regions from SNP 216363 to 216963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,451 DEBUG Processing 328/729 atomic regions from SNP 98105 to 98705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,453 DEBUG Processing 264/699 atomic regions from SNP 78930 to 79530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,527 DEBUG Processing 328/742 atomic regions from SNP 98225 to 98825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,539 DEBUG Processing 723/851 atomic regions from SNP 216663 to 217263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,673 DEBUG Processing 329/729 atomic regions from SNP 98405 to 99005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,683 DEBUG Processing 265/699 atomic regions from SNP 79230 to 79830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,773 DEBUG Processing 329/742 atomic regions from SNP 98525 to 99125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,798 DEBUG Processing 724/851 atomic regions from SNP 216963 to 217563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:16,901 DEBUG Processing 330/729 atomic regions from SNP 98705 to 99305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,908 DEBUG Processing 266/699 atomic regions from SNP 79530 to 80130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,024 DEBUG Processing 330/742 atomic regions from SNP 98825 to 99425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,074 DEBUG Processing 725/851 atomic regions from SNP 217263 to 217863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,133 DEBUG Processing 331/729 atomic regions from SNP 99005 to 99605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,142 DEBUG Processing 267/699 atomic regions from SNP 79830 to 80430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,267 DEBUG Processing 331/742 atomic regions from SNP 99125 to 99725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,326 DEBUG Processing 726/851 atomic regions from SNP 217563 to 218163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,361 DEBUG Processing 332/729 atomic regions from SNP 99305 to 99905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,371 DEBUG Processing 268/699 atomic regions from SNP 80130 to 80730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,506 DEBUG Processing 332/742 atomic regions from SNP 99425 to 100025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,573 DEBUG Processing 727/851 atomic regions from SNP 217863 to 218463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,587 DEBUG Processing 333/729 atomic regions from SNP 99605 to 100205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,602 DEBUG Processing 269/699 atomic regions from SNP 80430 to 81030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,743 DEBUG Processing 333/742 atomic regions from SNP 99725 to 100325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,816 DEBUG Processing 334/729 atomic regions from SNP 99905 to 100505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,836 DEBUG Processing 270/699 atomic regions from SNP 80730 to 81330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,840 DEBUG Processing 728/851 atomic regions from SNP 218163 to 218763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:17,974 DEBUG Processing 334/742 atomic regions from SNP 100025 to 100625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,031 DEBUG Processing 335/729 atomic regions from SNP 100205 to 100805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,064 DEBUG Processing 271/699 atomic regions from SNP 81030 to 81630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,094 DEBUG Processing 729/851 atomic regions from SNP 218463 to 219063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,199 DEBUG Processing 335/742 atomic regions from SNP 100325 to 100925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,244 DEBUG Processing 336/729 atomic regions from SNP 100505 to 101105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,285 DEBUG Processing 272/699 atomic regions from SNP 81330 to 81930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,362 DEBUG Processing 730/851 atomic regions from SNP 218763 to 219363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,434 DEBUG Processing 336/742 atomic regions from SNP 100625 to 101225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,456 DEBUG Processing 337/729 atomic regions from SNP 100805 to 101405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,529 DEBUG Processing 273/699 atomic regions from SNP 81630 to 82230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,617 DEBUG Processing 731/851 atomic regions from SNP 219063 to 219663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,665 DEBUG Processing 338/729 atomic regions from SNP 101105 to 101705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,679 DEBUG Processing 337/742 atomic regions from SNP 100925 to 101525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,772 DEBUG Processing 274/699 atomic regions from SNP 81930 to 82530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,865 DEBUG Processing 732/851 atomic regions from SNP 219363 to 219963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:18,881 DEBUG Processing 339/729 atomic regions from SNP 101405 to 102005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,929 DEBUG Processing 338/742 atomic regions from SNP 101225 to 101825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,989 DEBUG Processing 275/699 atomic regions from SNP 82230 to 82830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,095 DEBUG Processing 340/729 atomic regions from SNP 101705 to 102305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,145 DEBUG Processing 733/851 atomic regions from SNP 219663 to 220263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,172 DEBUG Processing 339/742 atomic regions from SNP 101525 to 102125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,211 DEBUG Processing 276/699 atomic regions from SNP 82530 to 83130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,307 DEBUG Processing 341/729 atomic regions from SNP 102005 to 102605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,385 DEBUG Processing 734/851 atomic regions from SNP 219963 to 220563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,407 DEBUG Processing 340/742 atomic regions from SNP 101825 to 102425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,443 DEBUG Processing 277/699 atomic regions from SNP 82830 to 83430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,520 DEBUG Processing 342/729 atomic regions from SNP 102305 to 102905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,629 DEBUG Processing 735/851 atomic regions from SNP 220263 to 220863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,649 DEBUG Processing 341/742 atomic regions from SNP 102125 to 102725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,679 DEBUG Processing 278/699 atomic regions from SNP 83130 to 83730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,736 DEBUG Processing 343/729 atomic regions from SNP 102605 to 103205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,874 DEBUG Processing 736/851 atomic regions from SNP 220563 to 221163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:19,917 DEBUG Processing 279/699 atomic regions from SNP 83430 to 84030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,918 DEBUG Processing 342/742 atomic regions from SNP 102425 to 103025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,955 DEBUG Processing 344/729 atomic regions from SNP 102905 to 103505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,127 DEBUG Processing 737/851 atomic regions from SNP 220863 to 221463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,154 DEBUG Processing 280/699 atomic regions from SNP 83730 to 84330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,177 DEBUG Processing 345/729 atomic regions from SNP 103205 to 103805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,204 DEBUG Processing 343/742 atomic regions from SNP 102725 to 103325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,375 DEBUG Processing 738/851 atomic regions from SNP 221163 to 221763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,389 DEBUG Processing 281/699 atomic regions from SNP 84030 to 84630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,397 DEBUG Processing 346/729 atomic regions from SNP 103505 to 104105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,471 DEBUG Processing 344/742 atomic regions from SNP 103025 to 103625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,619 DEBUG Processing 347/729 atomic regions from SNP 103805 to 104405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,624 DEBUG Processing 282/699 atomic regions from SNP 84330 to 84930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,626 DEBUG Processing 739/851 atomic regions from SNP 221463 to 222063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,727 DEBUG Processing 345/742 atomic regions from SNP 103325 to 103925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,842 DEBUG Processing 348/729 atomic regions from SNP 104105 to 104705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,858 DEBUG Processing 283/699 atomic regions from SNP 84630 to 85230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,879 DEBUG Processing 740/851 atomic regions from SNP 221763 to 222363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:20,984 DEBUG Processing 346/742 atomic regions from SNP 103625 to 104225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,055 DEBUG Processing 349/729 atomic regions from SNP 104405 to 105005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,093 DEBUG Processing 284/699 atomic regions from SNP 84930 to 85530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,129 DEBUG Processing 741/851 atomic regions from SNP 222063 to 222663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,236 DEBUG Processing 347/742 atomic regions from SNP 103925 to 104525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,271 DEBUG Processing 350/729 atomic regions from SNP 104705 to 105305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,340 DEBUG Processing 285/699 atomic regions from SNP 85230 to 85830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,385 DEBUG Processing 742/851 atomic regions from SNP 222363 to 222963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,472 DEBUG Processing 348/742 atomic regions from SNP 104225 to 104825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,490 DEBUG Processing 351/729 atomic regions from SNP 105005 to 105605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,591 DEBUG Processing 286/699 atomic regions from SNP 85530 to 86130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,638 DEBUG Processing 743/851 atomic regions from SNP 222663 to 223263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,706 DEBUG Processing 352/729 atomic regions from SNP 105305 to 105905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,731 DEBUG Processing 349/742 atomic regions from SNP 104525 to 105125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,850 DEBUG Processing 287/699 atomic regions from SNP 85830 to 86430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,888 DEBUG Processing 744/851 atomic regions from SNP 222963 to 223563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:21,923 DEBUG Processing 353/729 atomic regions from SNP 105605 to 106205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,974 DEBUG Processing 350/742 atomic regions from SNP 104825 to 105425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,082 DEBUG Processing 288/699 atomic regions from SNP 86130 to 86730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,138 DEBUG Processing 745/851 atomic regions from SNP 223263 to 223863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,150 DEBUG Processing 354/729 atomic regions from SNP 105905 to 106505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,207 DEBUG Processing 351/742 atomic regions from SNP 105125 to 105725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,316 DEBUG Processing 289/699 atomic regions from SNP 86430 to 87030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,375 DEBUG Processing 355/729 atomic regions from SNP 106205 to 106805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,382 DEBUG Processing 746/851 atomic regions from SNP 223563 to 224163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,439 DEBUG Processing 352/742 atomic regions from SNP 105425 to 106025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,549 DEBUG Processing 290/699 atomic regions from SNP 86730 to 87330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,601 DEBUG Processing 356/729 atomic regions from SNP 106505 to 107105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,631 DEBUG Processing 747/851 atomic regions from SNP 223863 to 224463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,677 DEBUG Processing 353/742 atomic regions from SNP 105725 to 106325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,779 DEBUG Processing 291/699 atomic regions from SNP 87030 to 87630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,828 DEBUG Processing 357/729 atomic regions from SNP 106805 to 107405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,877 DEBUG Processing 748/851 atomic regions from SNP 224163 to 224763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:22,910 DEBUG Processing 354/742 atomic regions from SNP 106025 to 106625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,011 DEBUG Processing 292/699 atomic regions from SNP 87330 to 87930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,049 DEBUG Processing 358/729 atomic regions from SNP 107105 to 107705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,125 DEBUG Processing 749/851 atomic regions from SNP 224463 to 225063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,143 DEBUG Processing 355/742 atomic regions from SNP 106325 to 106925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,239 DEBUG Processing 293/699 atomic regions from SNP 87630 to 88230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,279 DEBUG Processing 359/729 atomic regions from SNP 107405 to 108005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,370 DEBUG Processing 356/742 atomic regions from SNP 106625 to 107225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,376 DEBUG Processing 750/851 atomic regions from SNP 224763 to 225363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,468 DEBUG Processing 294/699 atomic regions from SNP 87930 to 88530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,501 DEBUG Processing 360/729 atomic regions from SNP 107705 to 108305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,598 DEBUG Processing 357/742 atomic regions from SNP 106925 to 107525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,623 DEBUG Processing 751/851 atomic regions from SNP 225063 to 225663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,700 DEBUG Processing 295/699 atomic regions from SNP 88230 to 88830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,725 DEBUG Processing 361/729 atomic regions from SNP 108005 to 108605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,824 DEBUG Processing 358/742 atomic regions from SNP 107225 to 107825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,868 DEBUG Processing 752/851 atomic regions from SNP 225363 to 225963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:23,932 DEBUG Processing 296/699 atomic regions from SNP 88530 to 89130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,953 DEBUG Processing 362/729 atomic regions from SNP 108305 to 108905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,051 DEBUG Processing 359/742 atomic regions from SNP 107525 to 108125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,118 DEBUG Processing 753/851 atomic regions from SNP 225663 to 226263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,173 DEBUG Processing 297/699 atomic regions from SNP 88830 to 89430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,186 DEBUG Processing 363/729 atomic regions from SNP 108605 to 109205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,285 DEBUG Processing 360/742 atomic regions from SNP 107825 to 108425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,368 DEBUG Processing 754/851 atomic regions from SNP 225963 to 226563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,412 DEBUG Processing 298/699 atomic regions from SNP 89130 to 89730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,423 DEBUG Processing 364/729 atomic regions from SNP 108905 to 109505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,520 DEBUG Processing 361/742 atomic regions from SNP 108125 to 108725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,618 DEBUG Processing 755/851 atomic regions from SNP 226263 to 226863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,650 DEBUG Processing 299/699 atomic regions from SNP 89430 to 90030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,652 DEBUG Processing 365/729 atomic regions from SNP 109205 to 109805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,754 DEBUG Processing 362/742 atomic regions from SNP 108425 to 109025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,871 DEBUG Processing 756/851 atomic regions from SNP 226563 to 227163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:24,884 DEBUG Processing 366/729 atomic regions from SNP 109505 to 110105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,889 DEBUG Processing 300/699 atomic regions from SNP 89730 to 90330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,983 DEBUG Processing 363/742 atomic regions from SNP 108725 to 109325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,111 DEBUG Processing 367/729 atomic regions from SNP 109805 to 110405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,115 DEBUG Processing 757/851 atomic regions from SNP 226863 to 227463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,117 DEBUG Processing 301/699 atomic regions from SNP 90030 to 90630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,209 DEBUG Processing 364/742 atomic regions from SNP 109025 to 109625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,334 DEBUG Processing 368/729 atomic regions from SNP 110105 to 110705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,342 DEBUG Processing 302/699 atomic regions from SNP 90330 to 90930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,359 DEBUG Processing 758/851 atomic regions from SNP 227163 to 227763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,431 DEBUG Processing 365/742 atomic regions from SNP 109325 to 109925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,561 DEBUG Processing 369/729 atomic regions from SNP 110405 to 111005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,575 DEBUG Processing 303/699 atomic regions from SNP 90630 to 91230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,619 DEBUG Processing 759/851 atomic regions from SNP 227463 to 228063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,660 DEBUG Processing 366/742 atomic regions from SNP 109625 to 110225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,795 DEBUG Processing 370/729 atomic regions from SNP 110705 to 111305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,813 DEBUG Processing 304/699 atomic regions from SNP 90930 to 91530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,865 DEBUG Processing 760/851 atomic regions from SNP 227763 to 228363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:25,884 DEBUG Processing 367/742 atomic regions from SNP 109925 to 110525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,023 DEBUG Processing 371/729 atomic regions from SNP 111005 to 111605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,066 DEBUG Processing 305/699 atomic regions from SNP 91230 to 91830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,111 DEBUG Processing 368/742 atomic regions from SNP 110225 to 110825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,112 DEBUG Processing 761/851 atomic regions from SNP 228063 to 228663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,256 DEBUG Processing 372/729 atomic regions from SNP 111305 to 111905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,307 DEBUG Processing 306/699 atomic regions from SNP 91530 to 92130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,355 DEBUG Processing 369/742 atomic regions from SNP 110525 to 111125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,369 DEBUG Processing 762/851 atomic regions from SNP 228363 to 228963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,484 DEBUG Processing 373/729 atomic regions from SNP 111605 to 112205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,562 DEBUG Processing 307/699 atomic regions from SNP 91830 to 92430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,597 DEBUG Processing 370/742 atomic regions from SNP 110825 to 111425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,633 DEBUG Processing 763/851 atomic regions from SNP 228663 to 229263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,731 DEBUG Processing 374/729 atomic regions from SNP 111905 to 112505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,810 DEBUG Processing 308/699 atomic regions from SNP 92130 to 92730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,827 DEBUG Processing 371/742 atomic regions from SNP 111125 to 111725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,910 DEBUG Processing 764/851 atomic regions from SNP 228963 to 229563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:26,983 DEBUG Processing 375/729 atomic regions from SNP 112205 to 112805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,048 DEBUG Processing 309/699 atomic regions from SNP 92430 to 93030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,048 DEBUG Processing 372/742 atomic regions from SNP 111425 to 112025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,170 DEBUG Processing 765/851 atomic regions from SNP 229263 to 229863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,242 DEBUG Processing 376/729 atomic regions from SNP 112505 to 113105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,265 DEBUG Processing 373/742 atomic regions from SNP 111725 to 112325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,291 DEBUG Processing 310/699 atomic regions from SNP 92730 to 93330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,434 DEBUG Processing 766/851 atomic regions from SNP 229563 to 230163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,494 DEBUG Processing 374/742 atomic regions from SNP 112025 to 112625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,499 DEBUG Processing 377/729 atomic regions from SNP 112805 to 113405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,530 DEBUG Processing 311/699 atomic regions from SNP 93030 to 93630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,693 DEBUG Processing 767/851 atomic regions from SNP 229863 to 230463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,738 DEBUG Processing 375/742 atomic regions from SNP 112325 to 112925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,755 DEBUG Processing 378/729 atomic regions from SNP 113105 to 113705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,797 DEBUG Processing 312/699 atomic regions from SNP 93330 to 93930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,935 DEBUG Processing 768/851 atomic regions from SNP 230163 to 230763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:27,980 DEBUG Processing 376/742 atomic regions from SNP 112625 to 113225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,015 DEBUG Processing 379/729 atomic regions from SNP 113405 to 114005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,061 DEBUG Processing 313/699 atomic regions from SNP 93630 to 94230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,178 DEBUG Processing 769/851 atomic regions from SNP 230463 to 231063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,212 DEBUG Processing 377/742 atomic regions from SNP 112925 to 113525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,271 DEBUG Processing 380/729 atomic regions from SNP 113705 to 114305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,331 DEBUG Processing 314/699 atomic regions from SNP 93930 to 94530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,419 DEBUG Processing 770/851 atomic regions from SNP 230763 to 231363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,441 DEBUG Processing 378/742 atomic regions from SNP 113225 to 113825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,521 DEBUG Processing 381/729 atomic regions from SNP 114005 to 114605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,580 DEBUG Processing 315/699 atomic regions from SNP 94230 to 94830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,658 DEBUG Processing 771/851 atomic regions from SNP 231063 to 231663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,669 DEBUG Processing 379/742 atomic regions from SNP 113525 to 114125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,738 DEBUG Processing 382/729 atomic regions from SNP 114305 to 114905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,829 DEBUG Processing 316/699 atomic regions from SNP 94530 to 95130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,898 DEBUG Processing 380/742 atomic regions from SNP 113825 to 114425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,903 DEBUG Processing 772/851 atomic regions from SNP 231363 to 231963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:28,993 DEBUG Processing 383/729 atomic regions from SNP 114605 to 115205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,068 DEBUG Processing 317/699 atomic regions from SNP 94830 to 95430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,127 DEBUG Processing 381/742 atomic regions from SNP 114125 to 114725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,148 DEBUG Processing 773/851 atomic regions from SNP 231663 to 232263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,243 DEBUG Processing 384/729 atomic regions from SNP 114905 to 115505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,310 DEBUG Processing 318/699 atomic regions from SNP 95130 to 95730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,369 DEBUG Processing 382/742 atomic regions from SNP 114425 to 115025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,405 DEBUG Processing 774/851 atomic regions from SNP 231963 to 232563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,489 DEBUG Processing 385/729 atomic regions from SNP 115205 to 115805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,557 DEBUG Processing 319/699 atomic regions from SNP 95430 to 96030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,610 DEBUG Processing 383/742 atomic regions from SNP 114725 to 115325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,667 DEBUG Processing 775/851 atomic regions from SNP 232263 to 232863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:29,702 DEBUG Processing 386/729 atomic regions from SNP 115505 to 116105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,789 DEBUG Processing 320/699 atomic regions from SNP 95730 to 96330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,842 DEBUG Processing 384/742 atomic regions from SNP 115025 to 115625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,914 DEBUG Processing 387/729 atomic regions from SNP 115805 to 116405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,939 DEBUG Processing 776/851 atomic regions from SNP 232563 to 233163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,031 DEBUG Processing 321/699 atomic regions from SNP 96030 to 96630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,074 DEBUG Processing 385/742 atomic regions from SNP 115325 to 115925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,148 DEBUG Processing 388/729 atomic regions from SNP 116105 to 116705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,188 DEBUG Processing 777/851 atomic regions from SNP 232863 to 233463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,277 DEBUG Processing 322/699 atomic regions from SNP 96330 to 96930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,315 DEBUG Processing 386/742 atomic regions from SNP 115625 to 116225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,397 DEBUG Processing 389/729 atomic regions from SNP 116405 to 117005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,426 DEBUG Processing 778/851 atomic regions from SNP 233163 to 233763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,515 DEBUG Processing 323/699 atomic regions from SNP 96630 to 97230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,551 DEBUG Processing 387/742 atomic regions from SNP 115925 to 116525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,658 DEBUG Processing 390/729 atomic regions from SNP 116705 to 117305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,665 DEBUG Processing 779/851 atomic regions from SNP 233463 to 234063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,739 DEBUG Processing 324/699 atomic regions from SNP 96930 to 97530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,795 DEBUG Processing 388/742 atomic regions from SNP 116225 to 116825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,888 DEBUG Processing 391/729 atomic regions from SNP 117005 to 117605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,909 DEBUG Processing 780/851 atomic regions from SNP 233763 to 234363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:30,965 DEBUG Processing 325/699 atomic regions from SNP 97230 to 97830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,019 DEBUG Processing 389/742 atomic regions from SNP 116525 to 117125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,116 DEBUG Processing 392/729 atomic regions from SNP 117305 to 117905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,158 DEBUG Processing 781/851 atomic regions from SNP 234063 to 234663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,199 DEBUG Processing 326/699 atomic regions from SNP 97530 to 98130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,249 DEBUG Processing 390/742 atomic regions from SNP 116825 to 117425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,347 DEBUG Processing 393/729 atomic regions from SNP 117605 to 118205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,395 DEBUG Processing 782/851 atomic regions from SNP 234363 to 234963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,422 DEBUG Processing 327/699 atomic regions from SNP 97830 to 98430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,473 DEBUG Processing 391/742 atomic regions from SNP 117125 to 117725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,576 DEBUG Processing 394/729 atomic regions from SNP 117905 to 118505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,639 DEBUG Processing 783/851 atomic regions from SNP 234663 to 235263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,650 DEBUG Processing 328/699 atomic regions from SNP 98130 to 98730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,707 DEBUG Processing 392/742 atomic regions from SNP 117425 to 118025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,797 DEBUG Processing 395/729 atomic regions from SNP 118205 to 118805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,875 DEBUG Processing 329/699 atomic regions from SNP 98430 to 99030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,881 DEBUG Processing 784/851 atomic regions from SNP 234963 to 235563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:31,941 DEBUG Processing 393/742 atomic regions from SNP 117725 to 118325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,025 DEBUG Processing 396/729 atomic regions from SNP 118505 to 119105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,111 DEBUG Processing 330/699 atomic regions from SNP 98730 to 99330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,132 DEBUG Processing 785/851 atomic regions from SNP 235263 to 235863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,180 DEBUG Processing 394/742 atomic regions from SNP 118025 to 118625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,246 DEBUG Processing 397/729 atomic regions from SNP 118805 to 119405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,334 DEBUG Processing 331/699 atomic regions from SNP 99030 to 99630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,381 DEBUG Processing 786/851 atomic regions from SNP 235563 to 236163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,436 DEBUG Processing 395/742 atomic regions from SNP 118325 to 118925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,468 DEBUG Processing 398/729 atomic regions from SNP 119105 to 119705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,556 DEBUG Processing 332/699 atomic regions from SNP 99330 to 99930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,649 DEBUG Processing 787/851 atomic regions from SNP 235863 to 236463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,679 DEBUG Processing 396/742 atomic regions from SNP 118625 to 119225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,694 DEBUG Processing 399/729 atomic regions from SNP 119405 to 120005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,781 DEBUG Processing 333/699 atomic regions from SNP 99630 to 100230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,901 DEBUG Processing 788/851 atomic regions from SNP 236163 to 236763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:32,910 DEBUG Processing 397/742 atomic regions from SNP 118925 to 119525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,914 DEBUG Processing 400/729 atomic regions from SNP 119705 to 120305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,999 DEBUG Processing 334/699 atomic regions from SNP 99930 to 100530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,131 DEBUG Processing 401/729 atomic regions from SNP 120005 to 120605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,147 DEBUG Processing 398/742 atomic regions from SNP 119225 to 119825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,154 DEBUG Processing 789/851 atomic regions from SNP 236463 to 237063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,247 DEBUG Processing 335/699 atomic regions from SNP 100230 to 100830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,350 DEBUG Processing 402/729 atomic regions from SNP 120305 to 120905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,384 DEBUG Processing 399/742 atomic regions from SNP 119525 to 120125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,413 DEBUG Processing 790/851 atomic regions from SNP 236763 to 237363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,501 DEBUG Processing 336/699 atomic regions from SNP 100530 to 101130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,589 DEBUG Processing 403/729 atomic regions from SNP 120605 to 121205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,623 DEBUG Processing 400/742 atomic regions from SNP 119825 to 120425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,668 DEBUG Processing 791/851 atomic regions from SNP 237063 to 237663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,726 DEBUG Processing 337/699 atomic regions from SNP 100830 to 101430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,833 DEBUG Processing 404/729 atomic regions from SNP 120905 to 121505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,849 DEBUG Processing 401/742 atomic regions from SNP 120125 to 120725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,911 DEBUG Processing 792/851 atomic regions from SNP 237363 to 237963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:33,951 DEBUG Processing 338/699 atomic regions from SNP 101130 to 101730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,055 DEBUG Processing 405/729 atomic regions from SNP 121205 to 121805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,073 DEBUG Processing 402/742 atomic regions from SNP 120425 to 121025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,157 DEBUG Processing 793/851 atomic regions from SNP 237663 to 238263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,185 DEBUG Processing 339/699 atomic regions from SNP 101430 to 102030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,272 DEBUG Processing 406/729 atomic regions from SNP 121505 to 122105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,293 DEBUG Processing 403/742 atomic regions from SNP 120725 to 121325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,408 DEBUG Processing 794/851 atomic regions from SNP 237963 to 238563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,434 DEBUG Processing 340/699 atomic regions from SNP 101730 to 102330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,482 DEBUG Processing 407/729 atomic regions from SNP 121805 to 122405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,508 DEBUG Processing 404/742 atomic regions from SNP 121025 to 121625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,649 DEBUG Processing 795/851 atomic regions from SNP 238263 to 238863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,659 DEBUG Processing 341/699 atomic regions from SNP 102030 to 102630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,695 DEBUG Processing 408/729 atomic regions from SNP 122105 to 122705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,729 DEBUG Processing 405/742 atomic regions from SNP 121325 to 121925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,891 DEBUG Processing 342/699 atomic regions from SNP 102330 to 102930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,896 DEBUG Processing 796/851 atomic regions from SNP 238563 to 239163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:34,917 DEBUG Processing 409/729 atomic regions from SNP 122405 to 123005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,957 DEBUG Processing 406/742 atomic regions from SNP 121625 to 122225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,123 DEBUG Processing 343/699 atomic regions from SNP 102630 to 103230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,139 DEBUG Processing 410/729 atomic regions from SNP 122705 to 123305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,146 DEBUG Processing 797/851 atomic regions from SNP 238863 to 239463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,187 DEBUG Processing 407/742 atomic regions from SNP 121925 to 122525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,356 DEBUG Processing 344/699 atomic regions from SNP 102930 to 103530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,362 DEBUG Processing 411/729 atomic regions from SNP 123005 to 123605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,391 DEBUG Processing 798/851 atomic regions from SNP 239163 to 239763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,416 DEBUG Processing 408/742 atomic regions from SNP 122225 to 122825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,574 DEBUG Processing 412/729 atomic regions from SNP 123305 to 123905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,583 DEBUG Processing 345/699 atomic regions from SNP 103230 to 103830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,641 DEBUG Processing 799/851 atomic regions from SNP 239463 to 240063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:35,646 DEBUG Processing 409/742 atomic regions from SNP 122525 to 123125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,785 DEBUG Processing 413/729 atomic regions from SNP 123605 to 124205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,805 DEBUG Processing 346/699 atomic regions from SNP 103530 to 104130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,877 DEBUG Processing 410/742 atomic regions from SNP 122825 to 123425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,887 DEBUG Processing 800/851 atomic regions from SNP 239763 to 240363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,010 DEBUG Processing 414/729 atomic regions from SNP 123905 to 124505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,033 DEBUG Processing 347/699 atomic regions from SNP 103830 to 104430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,115 DEBUG Processing 411/742 atomic regions from SNP 123125 to 123725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,147 DEBUG Processing 801/851 atomic regions from SNP 240063 to 240663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,229 DEBUG Processing 415/729 atomic regions from SNP 124205 to 124805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,260 DEBUG Processing 348/699 atomic regions from SNP 104130 to 104730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,351 DEBUG Processing 412/742 atomic regions from SNP 123425 to 124025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,400 DEBUG Processing 802/851 atomic regions from SNP 240363 to 240963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,459 DEBUG Processing 416/729 atomic regions from SNP 124505 to 125105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,493 DEBUG Processing 349/699 atomic regions from SNP 104430 to 105030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,583 DEBUG Processing 413/742 atomic regions from SNP 123725 to 124325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,647 DEBUG Processing 803/851 atomic regions from SNP 240663 to 241263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,687 DEBUG Processing 417/729 atomic regions from SNP 124805 to 125405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,716 DEBUG Processing 350/699 atomic regions from SNP 104730 to 105330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,809 DEBUG Processing 414/742 atomic regions from SNP 124025 to 124625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,894 DEBUG Processing 804/851 atomic regions from SNP 240963 to 241563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:36,900 DEBUG Processing 418/729 atomic regions from SNP 125105 to 125705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,939 DEBUG Processing 351/699 atomic regions from SNP 105030 to 105630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,025 DEBUG Processing 415/742 atomic regions from SNP 124325 to 124925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,112 DEBUG Processing 419/729 atomic regions from SNP 125405 to 126005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,136 DEBUG Processing 805/851 atomic regions from SNP 241263 to 241863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,164 DEBUG Processing 352/699 atomic regions from SNP 105330 to 105930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,243 DEBUG Processing 416/742 atomic regions from SNP 124625 to 125225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,329 DEBUG Processing 420/729 atomic regions from SNP 125705 to 126305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,387 DEBUG Processing 806/851 atomic regions from SNP 241563 to 242163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,394 DEBUG Processing 353/699 atomic regions from SNP 105630 to 106230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,466 DEBUG Processing 417/742 atomic regions from SNP 124925 to 125525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,577 DEBUG Processing 421/729 atomic regions from SNP 126005 to 126605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,626 DEBUG Processing 354/699 atomic regions from SNP 105930 to 106530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,640 DEBUG Processing 807/851 atomic regions from SNP 241863 to 242463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,688 DEBUG Processing 418/742 atomic regions from SNP 125225 to 125825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,804 DEBUG Processing 422/729 atomic regions from SNP 126305 to 126905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,865 DEBUG Processing 355/699 atomic regions from SNP 106230 to 106830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,900 DEBUG Processing 808/851 atomic regions from SNP 242163 to 242763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:37,942 DEBUG Processing 419/742 atomic regions from SNP 125525 to 126125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,020 DEBUG Processing 423/729 atomic regions from SNP 126605 to 127205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,093 DEBUG Processing 356/699 atomic regions from SNP 106530 to 107130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,151 DEBUG Processing 809/851 atomic regions from SNP 242463 to 243063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,190 DEBUG Processing 420/742 atomic regions from SNP 125825 to 126425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,237 DEBUG Processing 424/729 atomic regions from SNP 126905 to 127505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,328 DEBUG Processing 357/699 atomic regions from SNP 106830 to 107430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,405 DEBUG Processing 810/851 atomic regions from SNP 242763 to 243363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,454 DEBUG Processing 425/729 atomic regions from SNP 127205 to 127805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,455 DEBUG Processing 421/742 atomic regions from SNP 126125 to 126725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,559 DEBUG Processing 358/699 atomic regions from SNP 107130 to 107730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,658 DEBUG Processing 811/851 atomic regions from SNP 243063 to 243663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,677 DEBUG Processing 426/729 atomic regions from SNP 127505 to 128105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,717 DEBUG Processing 422/742 atomic regions from SNP 126425 to 127025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:38,783 DEBUG Processing 359/699 atomic regions from SNP 107430 to 108030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,906 DEBUG Processing 427/729 atomic regions from SNP 127805 to 128405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,913 DEBUG Processing 812/851 atomic regions from SNP 243363 to 243963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:38,956 DEBUG Processing 423/742 atomic regions from SNP 126725 to 127325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,015 DEBUG Processing 360/699 atomic regions from SNP 107730 to 108330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,126 DEBUG Processing 428/729 atomic regions from SNP 128105 to 128705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,168 DEBUG Processing 813/851 atomic regions from SNP 243663 to 244263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,200 DEBUG Processing 424/742 atomic regions from SNP 127025 to 127625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,247 DEBUG Processing 361/699 atomic regions from SNP 108030 to 108630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,343 DEBUG Processing 429/729 atomic regions from SNP 128405 to 129005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,431 DEBUG Processing 814/851 atomic regions from SNP 243963 to 244563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,452 DEBUG Processing 425/742 atomic regions from SNP 127325 to 127925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,478 DEBUG Processing 362/699 atomic regions from SNP 108330 to 108930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,573 DEBUG Processing 430/729 atomic regions from SNP 128705 to 129305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,687 DEBUG Processing 815/851 atomic regions from SNP 244263 to 244863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,697 DEBUG Processing 426/742 atomic regions from SNP 127625 to 128225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,716 DEBUG Processing 363/699 atomic regions from SNP 108630 to 109230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,801 DEBUG Processing 431/729 atomic regions from SNP 129005 to 129605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,933 DEBUG Processing 427/742 atomic regions from SNP 127925 to 128525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:39,939 DEBUG Processing 816/851 atomic regions from SNP 244563 to 245163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:39,950 DEBUG Processing 364/699 atomic regions from SNP 108930 to 109530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,032 DEBUG Processing 432/729 atomic regions from SNP 129305 to 129905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,184 DEBUG Processing 428/742 atomic regions from SNP 128225 to 128825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,193 DEBUG Processing 365/699 atomic regions from SNP 109230 to 109830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,200 DEBUG Processing 817/851 atomic regions from SNP 244863 to 245463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,252 DEBUG Processing 433/729 atomic regions from SNP 129605 to 130205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,441 DEBUG Processing 366/699 atomic regions from SNP 109530 to 110130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,449 DEBUG Processing 429/742 atomic regions from SNP 128525 to 129125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,458 DEBUG Processing 818/851 atomic regions from SNP 245163 to 245763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,473 DEBUG Processing 434/729 atomic regions from SNP 129905 to 130505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,679 DEBUG Processing 367/699 atomic regions from SNP 109830 to 110430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,691 DEBUG Processing 435/729 atomic regions from SNP 130205 to 130805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,715 DEBUG Processing 430/742 atomic regions from SNP 128825 to 129425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,717 DEBUG Processing 819/851 atomic regions from SNP 245463 to 246063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:40,915 DEBUG Processing 368/699 atomic regions from SNP 110130 to 110730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,917 DEBUG Processing 436/729 atomic regions from SNP 130505 to 131105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,970 DEBUG Processing 431/742 atomic regions from SNP 129125 to 129725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:40,975 DEBUG Processing 820/851 atomic regions from SNP 245763 to 246363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,145 DEBUG Processing 437/729 atomic regions from SNP 130805 to 131405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,155 DEBUG Processing 369/699 atomic regions from SNP 110430 to 111030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,230 DEBUG Processing 821/851 atomic regions from SNP 246063 to 246663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,232 DEBUG Processing 432/742 atomic regions from SNP 129425 to 130025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,390 DEBUG Processing 438/729 atomic regions from SNP 131105 to 131705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,411 DEBUG Processing 370/699 atomic regions from SNP 110730 to 111330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,477 DEBUG Processing 822/851 atomic regions from SNP 246363 to 246963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,482 DEBUG Processing 433/742 atomic regions from SNP 129725 to 130325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,610 DEBUG Processing 439/729 atomic regions from SNP 131405 to 132005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,646 DEBUG Processing 371/699 atomic regions from SNP 111030 to 111630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,723 DEBUG Processing 434/742 atomic regions from SNP 130025 to 130625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:41,727 DEBUG Processing 823/851 atomic regions from SNP 246663 to 247263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,825 DEBUG Processing 440/729 atomic regions from SNP 131705 to 132305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,870 DEBUG Processing 372/699 atomic regions from SNP 111330 to 111930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,973 DEBUG Processing 824/851 atomic regions from SNP 246963 to 247563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:41,979 DEBUG Processing 435/742 atomic regions from SNP 130325 to 130925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,041 DEBUG Processing 441/729 atomic regions from SNP 132005 to 132605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,091 DEBUG Processing 373/699 atomic regions from SNP 111630 to 112230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,226 DEBUG Processing 825/851 atomic regions from SNP 247263 to 247863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,232 DEBUG Processing 436/742 atomic regions from SNP 130625 to 131225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,264 DEBUG Processing 442/729 atomic regions from SNP 132305 to 132905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,315 DEBUG Processing 374/699 atomic regions from SNP 111930 to 112530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,476 DEBUG Processing 826/851 atomic regions from SNP 247563 to 248163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,482 DEBUG Processing 443/729 atomic regions from SNP 132605 to 133205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,490 DEBUG Processing 437/742 atomic regions from SNP 130925 to 131525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,546 DEBUG Processing 375/699 atomic regions from SNP 112230 to 112830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,702 DEBUG Processing 444/729 atomic regions from SNP 132905 to 133505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,732 DEBUG Processing 827/851 atomic regions from SNP 247863 to 248463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:42,744 DEBUG Processing 438/742 atomic regions from SNP 131225 to 131825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,775 DEBUG Processing 376/699 atomic regions from SNP 112530 to 113130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,918 DEBUG Processing 445/729 atomic regions from SNP 133205 to 133805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,978 DEBUG Processing 439/742 atomic regions from SNP 131525 to 132125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:42,982 DEBUG Processing 828/851 atomic regions from SNP 248163 to 248763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,004 DEBUG Processing 377/699 atomic regions from SNP 112830 to 113430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,131 DEBUG Processing 446/729 atomic regions from SNP 133505 to 134105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,211 DEBUG Processing 440/742 atomic regions from SNP 131825 to 132425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,235 DEBUG Processing 378/699 atomic regions from SNP 113130 to 113730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,236 DEBUG Processing 829/851 atomic regions from SNP 248463 to 249063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,342 DEBUG Processing 447/729 atomic regions from SNP 133805 to 134405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,436 DEBUG Processing 441/742 atomic regions from SNP 132125 to 132725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,465 DEBUG Processing 379/699 atomic regions from SNP 113430 to 114030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,483 DEBUG Processing 830/851 atomic regions from SNP 248763 to 249363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,563 DEBUG Processing 448/729 atomic regions from SNP 134105 to 134705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,664 DEBUG Processing 442/742 atomic regions from SNP 132425 to 133025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,695 DEBUG Processing 380/699 atomic regions from SNP 113730 to 114330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,738 DEBUG Processing 831/851 atomic regions from SNP 249063 to 249663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:43,773 DEBUG Processing 449/729 atomic regions from SNP 134405 to 135005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,890 DEBUG Processing 443/742 atomic regions from SNP 132725 to 133325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:43,925 DEBUG Processing 381/699 atomic regions from SNP 114030 to 114630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,986 DEBUG Processing 450/729 atomic regions from SNP 134705 to 135305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,989 DEBUG Processing 832/851 atomic regions from SNP 249363 to 249963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,151 DEBUG Processing 444/742 atomic regions from SNP 133025 to 133625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,158 DEBUG Processing 382/699 atomic regions from SNP 114330 to 114930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,203 DEBUG Processing 451/729 atomic regions from SNP 135005 to 135605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,241 DEBUG Processing 833/851 atomic regions from SNP 249663 to 250263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,388 DEBUG Processing 383/699 atomic regions from SNP 114630 to 115230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,419 DEBUG Processing 445/742 atomic regions from SNP 133325 to 133925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,422 DEBUG Processing 452/729 atomic regions from SNP 135305 to 135905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,487 DEBUG Processing 834/851 atomic regions from SNP 249963 to 250563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,611 DEBUG Processing 384/699 atomic regions from SNP 114930 to 115530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,651 DEBUG Processing 453/729 atomic regions from SNP 135605 to 136205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,684 DEBUG Processing 446/742 atomic regions from SNP 133625 to 134225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:44,756 DEBUG Processing 835/851 atomic regions from SNP 250263 to 250863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:44,832 DEBUG Processing 385/699 atomic regions from SNP 115230 to 115830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,898 DEBUG Processing 454/729 atomic regions from SNP 135905 to 136505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,942 DEBUG Processing 447/742 atomic regions from SNP 133925 to 134525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,008 DEBUG Processing 836/851 atomic regions from SNP 250563 to 251163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,064 DEBUG Processing 386/699 atomic regions from SNP 115530 to 116130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,137 DEBUG Processing 455/729 atomic regions from SNP 136205 to 136805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,205 DEBUG Processing 448/742 atomic regions from SNP 134225 to 134825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,259 DEBUG Processing 837/851 atomic regions from SNP 250863 to 251463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,286 DEBUG Processing 387/699 atomic regions from SNP 115830 to 116430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,387 DEBUG Processing 456/729 atomic regions from SNP 136505 to 137105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,464 DEBUG Processing 449/742 atomic regions from SNP 134525 to 135125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,504 DEBUG Processing 838/851 atomic regions from SNP 251163 to 251763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,514 DEBUG Processing 388/699 atomic regions from SNP 116130 to 116730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,635 DEBUG Processing 457/729 atomic regions from SNP 136805 to 137405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,720 DEBUG Processing 450/742 atomic regions from SNP 134825 to 135425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:45,745 DEBUG Processing 389/699 atomic regions from SNP 116430 to 117030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,751 DEBUG Processing 839/851 atomic regions from SNP 251463 to 252063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:45,871 DEBUG Processing 458/729 atomic regions from SNP 137105 to 137705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,979 DEBUG Processing 390/699 atomic regions from SNP 116730 to 117330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,982 DEBUG Processing 451/742 atomic regions from SNP 135125 to 135725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,003 DEBUG Processing 840/851 atomic regions from SNP 251763 to 252363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,081 DEBUG Processing 459/729 atomic regions from SNP 137405 to 138005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,212 DEBUG Processing 391/699 atomic regions from SNP 117030 to 117630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,253 DEBUG Processing 452/742 atomic regions from SNP 135425 to 136025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,260 DEBUG Processing 841/851 atomic regions from SNP 252063 to 252663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,313 DEBUG Processing 460/729 atomic regions from SNP 137705 to 138305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,449 DEBUG Processing 392/699 atomic regions from SNP 117330 to 117930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,522 DEBUG Processing 842/851 atomic regions from SNP 252363 to 252963 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,528 DEBUG Processing 453/742 atomic regions from SNP 135725 to 136325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,562 DEBUG Processing 461/729 atomic regions from SNP 138005 to 138605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,677 DEBUG Processing 393/699 atomic regions from SNP 117630 to 118230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,775 DEBUG Processing 843/851 atomic regions from SNP 252663 to 253263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:46,795 DEBUG Processing 454/742 atomic regions from SNP 136025 to 136625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:46,812 DEBUG Processing 462/729 atomic regions from SNP 138305 to 138905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,909 DEBUG Processing 394/699 atomic regions from SNP 117930 to 118530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,022 DEBUG Processing 844/851 atomic regions from SNP 252963 to 253563 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,059 DEBUG Processing 463/729 atomic regions from SNP 138605 to 139205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,069 DEBUG Processing 455/742 atomic regions from SNP 136325 to 136925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,133 DEBUG Processing 395/699 atomic regions from SNP 118230 to 118830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,265 DEBUG Processing 845/851 atomic regions from SNP 253263 to 253863 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,288 DEBUG Processing 464/729 atomic regions from SNP 138905 to 139505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,336 DEBUG Processing 456/742 atomic regions from SNP 136625 to 137225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,360 DEBUG Processing 396/699 atomic regions from SNP 118530 to 119130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,508 DEBUG Processing 465/729 atomic regions from SNP 139205 to 139805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,512 DEBUG Processing 846/851 atomic regions from SNP 253563 to 254163 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,592 DEBUG Processing 397/699 atomic regions from SNP 118830 to 119430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,594 DEBUG Processing 457/742 atomic regions from SNP 136925 to 137525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,729 DEBUG Processing 466/729 atomic regions from SNP 139505 to 140105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,762 DEBUG Processing 847/851 atomic regions from SNP 253863 to 254463 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:47,824 DEBUG Processing 458/742 atomic regions from SNP 137225 to 137825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:47,826 DEBUG Processing 398/699 atomic regions from SNP 119130 to 119730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,941 DEBUG Processing 467/729 atomic regions from SNP 139805 to 140405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,021 DEBUG Processing 848/851 atomic regions from SNP 254163 to 254763 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,057 DEBUG Processing 459/742 atomic regions from SNP 137525 to 138125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,061 DEBUG Processing 399/699 atomic regions from SNP 119430 to 120030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,174 DEBUG Processing 468/729 atomic regions from SNP 140105 to 140705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,293 DEBUG Processing 849/851 atomic regions from SNP 254463 to 255063 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,295 DEBUG Processing 400/699 atomic regions from SNP 119730 to 120330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,310 DEBUG Processing 460/742 atomic regions from SNP 137825 to 138425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,389 DEBUG Processing 469/729 atomic regions from SNP 140405 to 141005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,529 DEBUG Processing 401/699 atomic regions from SNP 120030 to 120630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,559 DEBUG Processing 461/742 atomic regions from SNP 138125 to 138725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,565 DEBUG Processing 850/851 atomic regions from SNP 254763 to 255363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,605 DEBUG Processing 470/729 atomic regions from SNP 140705 to 141305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,760 DEBUG Processing 402/699 atomic regions from SNP 120330 to 120930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,813 DEBUG Processing 462/742 atomic regions from SNP 138425 to 139025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:48,822 DEBUG Processing 851/851 atomic regions from SNP 255063 to 255663 for chr6 (subchromosome 1 of 1). 2025-01-31 09:52:48,824 DEBUG Processing 471/729 atomic regions from SNP 141005 to 141605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,961 DEBUG Unique SNPs positions in subchromosome 1: 255664 2025-01-31 09:52:48,987 DEBUG Processing 403/699 atomic regions from SNP 120630 to 121230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,045 DEBUG Processing 472/729 atomic regions from SNP 141305 to 141905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,048 DEBUG Processing 463/742 atomic regions from SNP 138725 to 139325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,212 DEBUG Processing 404/699 atomic regions from SNP 120930 to 121530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,264 DEBUG Processing 473/729 atomic regions from SNP 141605 to 142205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,277 DEBUG Processing 464/742 atomic regions from SNP 139025 to 139625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,437 DEBUG Processing 405/699 atomic regions from SNP 121230 to 121830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,483 DEBUG Processing 474/729 atomic regions from SNP 141905 to 142505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,505 DEBUG Processing 465/742 atomic regions from SNP 139325 to 139925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,656 DEBUG Processing 406/699 atomic regions from SNP 121530 to 122130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,701 DEBUG Processing 475/729 atomic regions from SNP 142205 to 142805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,740 DEBUG Processing 466/742 atomic regions from SNP 139625 to 140225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:49,879 DEBUG Processing 407/699 atomic regions from SNP 121830 to 122430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,922 DEBUG Processing 476/729 atomic regions from SNP 142505 to 143105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:49,966 DEBUG Processing 467/742 atomic regions from SNP 139925 to 140525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,113 DEBUG Processing 408/699 atomic regions from SNP 122130 to 122730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,147 DEBUG Processing 477/729 atomic regions from SNP 142805 to 143405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,204 DEBUG Processing 468/742 atomic regions from SNP 140225 to 140825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,346 DEBUG Processing 409/699 atomic regions from SNP 122430 to 123030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,364 DEBUG Processing 478/729 atomic regions from SNP 143105 to 143705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,428 DEBUG Processing 469/742 atomic regions from SNP 140525 to 141125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,567 DEBUG Processing 410/699 atomic regions from SNP 122730 to 123330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,577 DEBUG Processing 479/729 atomic regions from SNP 143405 to 144005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,654 DEBUG Processing 470/742 atomic regions from SNP 140825 to 141425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:50,792 DEBUG Processing 480/729 atomic regions from SNP 143705 to 144305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:50,794 DEBUG Processing 411/699 atomic regions from SNP 123030 to 123630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,883 DEBUG Processing 471/742 atomic regions from SNP 141125 to 141725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,004 DEBUG Processing 481/729 atomic regions from SNP 144005 to 144605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,038 DEBUG Processing 412/699 atomic regions from SNP 123330 to 123930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,132 DEBUG Processing 472/742 atomic regions from SNP 141425 to 142025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,231 DEBUG Processing 482/729 atomic regions from SNP 144305 to 144905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,271 DEBUG Processing 413/699 atomic regions from SNP 123630 to 124230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,366 DEBUG Processing 473/742 atomic regions from SNP 141725 to 142325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,464 DEBUG Processing 483/729 atomic regions from SNP 144605 to 145205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,510 DEBUG Processing 414/699 atomic regions from SNP 123930 to 124530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,626 DEBUG Processing 474/742 atomic regions from SNP 142025 to 142625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,682 DEBUG Processing 484/729 atomic regions from SNP 144905 to 145505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,745 DEBUG Processing 415/699 atomic regions from SNP 124230 to 124830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,875 DEBUG Processing 475/742 atomic regions from SNP 142325 to 142925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:51,904 DEBUG Processing 485/729 atomic regions from SNP 145205 to 145805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:51,992 DEBUG Processing 416/699 atomic regions from SNP 124530 to 125130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,110 DEBUG Processing 476/742 atomic regions from SNP 142625 to 143225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,138 DEBUG Processing 486/729 atomic regions from SNP 145505 to 146105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,262 DEBUG Processing 417/699 atomic regions from SNP 124830 to 125430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,342 DEBUG Processing 477/742 atomic regions from SNP 142925 to 143525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,355 DEBUG Processing 487/729 atomic regions from SNP 145805 to 146405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,504 DEBUG Processing 418/699 atomic regions from SNP 125130 to 125730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,565 DEBUG Processing 488/729 atomic regions from SNP 146105 to 146705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,571 DEBUG Processing 478/742 atomic regions from SNP 143225 to 143825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,747 DEBUG Processing 419/699 atomic regions from SNP 125430 to 126030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,780 DEBUG Processing 489/729 atomic regions from SNP 146405 to 147005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:52,805 DEBUG Processing 479/742 atomic regions from SNP 143525 to 144125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:52,984 DEBUG Processing 420/699 atomic regions from SNP 125730 to 126330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,997 DEBUG Processing 490/729 atomic regions from SNP 146705 to 147305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,038 DEBUG Processing 480/742 atomic regions from SNP 143825 to 144425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,211 DEBUG Processing 491/729 atomic regions from SNP 147005 to 147605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,241 DEBUG Processing 421/699 atomic regions from SNP 126030 to 126630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,281 DEBUG Processing 481/742 atomic regions from SNP 144125 to 144725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,429 DEBUG Processing 492/729 atomic regions from SNP 147305 to 147905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,475 DEBUG Processing 422/699 atomic regions from SNP 126330 to 126930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,518 DEBUG Processing 482/742 atomic regions from SNP 144425 to 145025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,651 DEBUG Processing 493/729 atomic regions from SNP 147605 to 148205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,730 DEBUG Processing 423/699 atomic regions from SNP 126630 to 127230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,756 DEBUG Processing 483/742 atomic regions from SNP 144725 to 145325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:53,871 DEBUG Processing 494/729 atomic regions from SNP 147905 to 148505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:53,986 DEBUG Processing 424/699 atomic regions from SNP 126930 to 127530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,995 DEBUG Processing 484/742 atomic regions from SNP 145025 to 145625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,093 DEBUG Processing 495/729 atomic regions from SNP 148205 to 148805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,258 DEBUG Processing 485/742 atomic regions from SNP 145325 to 145925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,259 DEBUG Processing 425/699 atomic regions from SNP 127230 to 127830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,319 DEBUG Processing 496/729 atomic regions from SNP 148505 to 149105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,502 DEBUG Processing 486/742 atomic regions from SNP 145625 to 146225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,526 DEBUG Processing 426/699 atomic regions from SNP 127530 to 128130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,543 DEBUG Processing 497/729 atomic regions from SNP 148805 to 149405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,747 DEBUG Processing 487/742 atomic regions from SNP 145925 to 146525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,766 DEBUG Processing 498/729 atomic regions from SNP 149105 to 149705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:54,775 DEBUG Processing 427/699 atomic regions from SNP 127830 to 128430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,986 DEBUG Processing 488/742 atomic regions from SNP 146225 to 146825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:54,995 DEBUG Processing 499/729 atomic regions from SNP 149405 to 150005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,024 DEBUG Processing 428/699 atomic regions from SNP 128130 to 128730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,208 DEBUG Processing 500/729 atomic regions from SNP 149705 to 150305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,222 DEBUG Processing 489/742 atomic regions from SNP 146525 to 147125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,269 DEBUG Processing 429/699 atomic regions from SNP 128430 to 129030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,420 DEBUG Processing 501/729 atomic regions from SNP 150005 to 150605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,454 DEBUG Processing 490/742 atomic regions from SNP 146825 to 147425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,506 DEBUG Processing 430/699 atomic regions from SNP 128730 to 129330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,627 DEBUG Processing 502/729 atomic regions from SNP 150305 to 150905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,686 DEBUG Processing 491/742 atomic regions from SNP 147125 to 147725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:55,763 DEBUG Processing 431/699 atomic regions from SNP 129030 to 129630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,837 DEBUG Processing 503/729 atomic regions from SNP 150605 to 151205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:55,925 DEBUG Processing 492/742 atomic regions from SNP 147425 to 148025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,033 DEBUG Processing 432/699 atomic regions from SNP 129330 to 129930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,048 DEBUG Processing 504/729 atomic regions from SNP 150905 to 151505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,165 DEBUG Processing 493/742 atomic regions from SNP 147725 to 148325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,261 DEBUG Processing 505/729 atomic regions from SNP 151205 to 151805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,281 DEBUG Processing 433/699 atomic regions from SNP 129630 to 130230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,413 DEBUG Processing 494/742 atomic regions from SNP 148025 to 148625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,471 DEBUG Processing 506/729 atomic regions from SNP 151505 to 152105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,539 DEBUG Processing 434/699 atomic regions from SNP 129930 to 130530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,669 DEBUG Processing 495/742 atomic regions from SNP 148325 to 148925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:56,683 DEBUG Processing 507/729 atomic regions from SNP 151805 to 152405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,787 DEBUG Processing 435/699 atomic regions from SNP 130230 to 130830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,896 DEBUG Processing 508/729 atomic regions from SNP 152105 to 152705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:56,902 DEBUG Processing 496/742 atomic regions from SNP 148625 to 149225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,022 DEBUG Processing 436/699 atomic regions from SNP 130530 to 131130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,114 DEBUG Processing 509/729 atomic regions from SNP 152405 to 153005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,140 DEBUG Processing 497/742 atomic regions from SNP 148925 to 149525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,274 DEBUG Processing 437/699 atomic regions from SNP 130830 to 131430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,328 DEBUG Processing 510/729 atomic regions from SNP 152705 to 153305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,377 DEBUG Processing 498/742 atomic regions from SNP 149225 to 149825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,532 DEBUG Processing 438/699 atomic regions from SNP 131130 to 131730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,543 DEBUG Processing 511/729 atomic regions from SNP 153005 to 153605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,613 DEBUG Processing 499/742 atomic regions from SNP 149525 to 150125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,754 DEBUG Processing 512/729 atomic regions from SNP 153305 to 153905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:57,767 DEBUG Processing 439/699 atomic regions from SNP 131430 to 132030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,850 DEBUG Processing 500/742 atomic regions from SNP 149825 to 150425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:57,963 DEBUG Processing 513/729 atomic regions from SNP 153605 to 154205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,030 DEBUG Processing 440/699 atomic regions from SNP 131730 to 132330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,083 DEBUG Processing 501/742 atomic regions from SNP 150125 to 150725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,171 DEBUG Processing 514/729 atomic regions from SNP 153905 to 154505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,290 DEBUG Processing 441/699 atomic regions from SNP 132030 to 132630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,320 DEBUG Processing 502/742 atomic regions from SNP 150425 to 151025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,381 DEBUG Processing 515/729 atomic regions from SNP 154205 to 154805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,544 DEBUG Processing 442/699 atomic regions from SNP 132330 to 132930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,555 DEBUG Processing 503/742 atomic regions from SNP 150725 to 151325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,590 DEBUG Processing 516/729 atomic regions from SNP 154505 to 155105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,794 DEBUG Processing 504/742 atomic regions from SNP 151025 to 151625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:58,805 DEBUG Processing 517/729 atomic regions from SNP 154805 to 155405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:58,808 DEBUG Processing 443/699 atomic regions from SNP 132630 to 133230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,031 DEBUG Processing 505/742 atomic regions from SNP 151325 to 151925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,039 DEBUG Processing 518/729 atomic regions from SNP 155105 to 155705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,049 DEBUG Processing 444/699 atomic regions from SNP 132930 to 133530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,268 DEBUG Processing 506/742 atomic regions from SNP 151625 to 152225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,283 DEBUG Processing 519/729 atomic regions from SNP 155405 to 156005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,284 DEBUG Processing 445/699 atomic regions from SNP 133230 to 133830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,509 DEBUG Processing 507/742 atomic regions from SNP 151925 to 152525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,525 DEBUG Processing 446/699 atomic regions from SNP 133530 to 134130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,525 DEBUG Processing 520/729 atomic regions from SNP 155705 to 156305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,752 DEBUG Processing 508/742 atomic regions from SNP 152225 to 152825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,765 DEBUG Processing 521/729 atomic regions from SNP 156005 to 156605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:59,768 DEBUG Processing 447/699 atomic regions from SNP 133830 to 134430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,997 DEBUG Processing 509/742 atomic regions from SNP 152525 to 153125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:59,999 DEBUG Processing 522/729 atomic regions from SNP 156305 to 156905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,007 DEBUG Processing 448/699 atomic regions from SNP 134130 to 134730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,236 DEBUG Processing 510/742 atomic regions from SNP 152825 to 153425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,245 DEBUG Processing 523/729 atomic regions from SNP 156605 to 157205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,250 DEBUG Processing 449/699 atomic regions from SNP 134430 to 135030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,490 DEBUG Processing 450/699 atomic regions from SNP 134730 to 135330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,497 DEBUG Processing 524/729 atomic regions from SNP 156905 to 157505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,501 DEBUG Processing 511/742 atomic regions from SNP 153125 to 153725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,727 DEBUG Processing 451/699 atomic regions from SNP 135030 to 135630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,740 DEBUG Processing 525/729 atomic regions from SNP 157205 to 157805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:00,763 DEBUG Processing 512/742 atomic regions from SNP 153425 to 154025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:00,964 DEBUG Processing 452/699 atomic regions from SNP 135330 to 135930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,985 DEBUG Processing 526/729 atomic regions from SNP 157505 to 158105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,017 DEBUG Processing 513/742 atomic regions from SNP 153725 to 154325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,201 DEBUG Processing 453/699 atomic regions from SNP 135630 to 136230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,235 DEBUG Processing 527/729 atomic regions from SNP 157805 to 158405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,256 DEBUG Processing 514/742 atomic regions from SNP 154025 to 154625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,432 DEBUG Processing 454/699 atomic regions from SNP 135930 to 136530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,467 DEBUG Processing 528/729 atomic regions from SNP 158105 to 158705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,495 DEBUG Processing 515/742 atomic regions from SNP 154325 to 154925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,665 DEBUG Processing 455/699 atomic regions from SNP 136230 to 136830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,716 DEBUG Processing 529/729 atomic regions from SNP 158405 to 159005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,735 DEBUG Processing 516/742 atomic regions from SNP 154625 to 155225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:01,904 DEBUG Processing 456/699 atomic regions from SNP 136530 to 137130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:01,974 DEBUG Processing 530/729 atomic regions from SNP 158705 to 159305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:01,985 DEBUG Processing 517/742 atomic regions from SNP 154925 to 155525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,134 DEBUG Processing 457/699 atomic regions from SNP 136830 to 137430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,200 DEBUG Processing 531/729 atomic regions from SNP 159005 to 159605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,224 DEBUG Processing 518/742 atomic regions from SNP 155225 to 155825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,361 DEBUG Processing 458/699 atomic regions from SNP 137130 to 137730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,433 DEBUG Processing 532/729 atomic regions from SNP 159305 to 159905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,458 DEBUG Processing 519/742 atomic regions from SNP 155525 to 156125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,583 DEBUG Processing 459/699 atomic regions from SNP 137430 to 138030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,663 DEBUG Processing 533/729 atomic regions from SNP 159605 to 160205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,692 DEBUG Processing 520/742 atomic regions from SNP 155825 to 156425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:02,820 DEBUG Processing 460/699 atomic regions from SNP 137730 to 138330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:02,897 DEBUG Processing 534/729 atomic regions from SNP 159905 to 160505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:02,922 DEBUG Processing 521/742 atomic regions from SNP 156125 to 156725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,053 DEBUG Processing 461/699 atomic regions from SNP 138030 to 138630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,122 DEBUG Processing 535/729 atomic regions from SNP 160205 to 160805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,153 DEBUG Processing 522/742 atomic regions from SNP 156425 to 157025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,282 DEBUG Processing 462/699 atomic regions from SNP 138330 to 138930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,348 DEBUG Processing 536/729 atomic regions from SNP 160505 to 161105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,401 DEBUG Processing 523/742 atomic regions from SNP 156725 to 157325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,508 DEBUG Processing 463/699 atomic regions from SNP 138630 to 139230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,565 DEBUG Processing 537/729 atomic regions from SNP 160805 to 161405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,650 DEBUG Processing 524/742 atomic regions from SNP 157025 to 157625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,735 DEBUG Processing 464/699 atomic regions from SNP 138930 to 139530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:03,784 DEBUG Processing 538/729 atomic regions from SNP 161105 to 161705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:03,891 DEBUG Processing 525/742 atomic regions from SNP 157325 to 157925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:03,963 DEBUG Processing 465/699 atomic regions from SNP 139230 to 139830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,014 DEBUG Processing 539/729 atomic regions from SNP 161405 to 162005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,141 DEBUG Processing 526/742 atomic regions from SNP 157625 to 158225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,197 DEBUG Processing 466/699 atomic regions from SNP 139530 to 140130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,229 DEBUG Processing 540/729 atomic regions from SNP 161705 to 162305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,383 DEBUG Processing 527/742 atomic regions from SNP 157925 to 158525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,424 DEBUG Processing 467/699 atomic regions from SNP 139830 to 140430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,443 DEBUG Processing 541/729 atomic regions from SNP 162005 to 162605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,633 DEBUG Processing 528/742 atomic regions from SNP 158225 to 158825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,653 DEBUG Processing 468/699 atomic regions from SNP 140130 to 140730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:04,658 DEBUG Processing 542/729 atomic regions from SNP 162305 to 162905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,873 DEBUG Processing 543/729 atomic regions from SNP 162605 to 163205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:04,874 DEBUG Processing 529/742 atomic regions from SNP 158525 to 159125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:04,879 DEBUG Processing 469/699 atomic regions from SNP 140430 to 141030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,096 DEBUG Processing 544/729 atomic regions from SNP 162905 to 163505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,112 DEBUG Processing 470/699 atomic regions from SNP 140730 to 141330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,116 DEBUG Processing 530/742 atomic regions from SNP 158825 to 159425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,313 DEBUG Processing 545/729 atomic regions from SNP 163205 to 163805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,341 DEBUG Processing 471/699 atomic regions from SNP 141030 to 141630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,358 DEBUG Processing 531/742 atomic regions from SNP 159125 to 159725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,529 DEBUG Processing 546/729 atomic regions from SNP 163505 to 164105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,571 DEBUG Processing 472/699 atomic regions from SNP 141330 to 141930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,598 DEBUG Processing 532/742 atomic regions from SNP 159425 to 160025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,741 DEBUG Processing 547/729 atomic regions from SNP 163805 to 164405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:05,798 DEBUG Processing 473/699 atomic regions from SNP 141630 to 142230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:05,825 DEBUG Processing 533/742 atomic regions from SNP 159725 to 160325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:05,950 DEBUG Processing 548/729 atomic regions from SNP 164105 to 164705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,027 DEBUG Processing 474/699 atomic regions from SNP 141930 to 142530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,055 DEBUG Processing 534/742 atomic regions from SNP 160025 to 160625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,166 DEBUG Processing 549/729 atomic regions from SNP 164405 to 165005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,264 DEBUG Processing 475/699 atomic regions from SNP 142230 to 142830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,291 DEBUG Processing 535/742 atomic regions from SNP 160325 to 160925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,381 DEBUG Processing 550/729 atomic regions from SNP 164705 to 165305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,503 DEBUG Processing 476/699 atomic regions from SNP 142530 to 143130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,522 DEBUG Processing 536/742 atomic regions from SNP 160625 to 161225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,596 DEBUG Processing 551/729 atomic regions from SNP 165005 to 165605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:06,747 DEBUG Processing 477/699 atomic regions from SNP 142830 to 143430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:06,771 DEBUG Processing 537/742 atomic regions from SNP 160925 to 161525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:06,816 DEBUG Processing 552/729 atomic regions from SNP 165305 to 165905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,003 DEBUG Processing 478/699 atomic regions from SNP 143130 to 143730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,014 DEBUG Processing 538/742 atomic regions from SNP 161225 to 161825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,034 DEBUG Processing 553/729 atomic regions from SNP 165605 to 166205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,228 DEBUG Processing 479/699 atomic regions from SNP 143430 to 144030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,248 DEBUG Processing 554/729 atomic regions from SNP 165905 to 166505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,255 DEBUG Processing 539/742 atomic regions from SNP 161525 to 162125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,464 DEBUG Processing 480/699 atomic regions from SNP 143730 to 144330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,469 DEBUG Processing 555/729 atomic regions from SNP 166205 to 166805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,480 DEBUG Processing 540/742 atomic regions from SNP 161825 to 162425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,680 DEBUG Processing 556/729 atomic regions from SNP 166505 to 167105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,705 DEBUG Processing 481/699 atomic regions from SNP 144030 to 144630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:07,706 DEBUG Processing 541/742 atomic regions from SNP 162125 to 162725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,891 DEBUG Processing 557/729 atomic regions from SNP 166805 to 167405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:07,930 DEBUG Processing 542/742 atomic regions from SNP 162425 to 163025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:07,952 DEBUG Processing 482/699 atomic regions from SNP 144330 to 144930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,101 DEBUG Processing 558/729 atomic regions from SNP 167105 to 167705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,159 DEBUG Processing 543/742 atomic regions from SNP 162725 to 163325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,200 DEBUG Processing 483/699 atomic regions from SNP 144630 to 145230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,319 DEBUG Processing 559/729 atomic regions from SNP 167405 to 168005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,383 DEBUG Processing 544/742 atomic regions from SNP 163025 to 163625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,453 DEBUG Processing 484/699 atomic regions from SNP 144930 to 145530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,537 DEBUG Processing 560/729 atomic regions from SNP 167705 to 168305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,636 DEBUG Processing 545/742 atomic regions from SNP 163325 to 163925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,701 DEBUG Processing 485/699 atomic regions from SNP 145230 to 145830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,752 DEBUG Processing 561/729 atomic regions from SNP 168005 to 168605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:08,868 DEBUG Processing 546/742 atomic regions from SNP 163625 to 164225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:08,924 DEBUG Processing 486/699 atomic regions from SNP 145530 to 146130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:08,964 DEBUG Processing 562/729 atomic regions from SNP 168305 to 168905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,091 DEBUG Processing 547/742 atomic regions from SNP 163925 to 164525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,153 DEBUG Processing 487/699 atomic regions from SNP 145830 to 146430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,181 DEBUG Processing 563/729 atomic regions from SNP 168605 to 169205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,319 DEBUG Processing 548/742 atomic regions from SNP 164225 to 164825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,404 DEBUG Processing 564/729 atomic regions from SNP 168905 to 169505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,407 DEBUG Processing 488/699 atomic regions from SNP 146130 to 146730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,545 DEBUG Processing 549/742 atomic regions from SNP 164525 to 165125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,624 DEBUG Processing 565/729 atomic regions from SNP 169205 to 169805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,662 DEBUG Processing 489/699 atomic regions from SNP 146430 to 147030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:09,783 DEBUG Processing 550/742 atomic regions from SNP 164825 to 165425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:09,845 DEBUG Processing 566/729 atomic regions from SNP 169505 to 170105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:09,918 DEBUG Processing 490/699 atomic regions from SNP 146730 to 147330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,011 DEBUG Processing 551/742 atomic regions from SNP 165125 to 165725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,068 DEBUG Processing 567/729 atomic regions from SNP 169805 to 170405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,155 DEBUG Processing 491/699 atomic regions from SNP 147030 to 147630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,237 DEBUG Processing 552/742 atomic regions from SNP 165425 to 166025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,288 DEBUG Processing 568/729 atomic regions from SNP 170105 to 170705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,376 DEBUG Processing 492/699 atomic regions from SNP 147330 to 147930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,460 DEBUG Processing 553/742 atomic regions from SNP 165725 to 166325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,506 DEBUG Processing 569/729 atomic regions from SNP 170405 to 171005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,600 DEBUG Processing 493/699 atomic regions from SNP 147630 to 148230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,687 DEBUG Processing 554/742 atomic regions from SNP 166025 to 166625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,730 DEBUG Processing 570/729 atomic regions from SNP 170705 to 171305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:10,829 DEBUG Processing 494/699 atomic regions from SNP 147930 to 148530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:10,909 DEBUG Processing 555/742 atomic regions from SNP 166325 to 166925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:10,947 DEBUG Processing 571/729 atomic regions from SNP 171005 to 171605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,051 DEBUG Processing 495/699 atomic regions from SNP 148230 to 148830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,132 DEBUG Processing 556/742 atomic regions from SNP 166625 to 167225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,160 DEBUG Processing 572/729 atomic regions from SNP 171305 to 171905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,269 DEBUG Processing 496/699 atomic regions from SNP 148530 to 149130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,359 DEBUG Processing 557/742 atomic regions from SNP 166925 to 167525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,376 DEBUG Processing 573/729 atomic regions from SNP 171605 to 172205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,492 DEBUG Processing 497/699 atomic regions from SNP 148830 to 149430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,592 DEBUG Processing 574/729 atomic regions from SNP 171905 to 172505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,599 DEBUG Processing 558/742 atomic regions from SNP 167225 to 167825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,715 DEBUG Processing 498/699 atomic regions from SNP 149130 to 149730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:11,809 DEBUG Processing 575/729 atomic regions from SNP 172205 to 172805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:11,851 DEBUG Processing 559/742 atomic regions from SNP 167525 to 168125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:11,941 DEBUG Processing 499/699 atomic regions from SNP 149430 to 150030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,027 DEBUG Processing 576/729 atomic regions from SNP 172505 to 173105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,079 DEBUG Processing 560/742 atomic regions from SNP 167825 to 168425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,172 DEBUG Processing 500/699 atomic regions from SNP 149730 to 150330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,243 DEBUG Processing 577/729 atomic regions from SNP 172805 to 173405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,303 DEBUG Processing 561/742 atomic regions from SNP 168125 to 168725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,405 DEBUG Processing 501/699 atomic regions from SNP 150030 to 150630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,470 DEBUG Processing 578/729 atomic regions from SNP 173105 to 173705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,530 DEBUG Processing 562/742 atomic regions from SNP 168425 to 169025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,600 DEBUG Subchromosome time: 266.64743788109627, subchromosome SNPs: 255664 2025-01-31 09:53:12,600 DEBUG Estimated BADs: [1.53, 0.31, 0.76, 3.06, 0.76, 4.59, 1.53, 0.38, 1.53, 7.64, 1.53, 6.11, 1.53, 0.76, 3.06, 0.51, 4.59, 1.53, 0.31, 0.76, 6.11, 1.53, 4.59, 1.53, 0.31, 0.76, 7.64, 3.06, 15.28, 3.06, 0.51, 1.53, 6.11, 1.53, 0.51, 1.53] SNP counts: [10339, 2977, 29623, 13902, 3404, 2913, 7792, 4488, 1708, 413, 12268, 633, 7816, 12491, 1599, 4099, 4701, 1685, 8998, 5214, 1740, 3259, 12002, 20999, 3267, 12880, 1553, 19092, 1006, 8101, 5659, 1883, 995, 5858, 6301, 14006] SNP IDs counts: [10339, 2977, 29623, 13902, 3404, 2913, 7792, 4488, 1708, 413, 12268, 633, 7816, 12491, 1599, 4099, 4701, 1685, 8998, 5214, 1740, 3259, 12002, 20999, 3267, 12880, 1553, 19092, 1006, 8101, 5659, 1883, 995, 5858, 6301, 14006] Critical gap: 665789bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.04Mbp, 10.95Mbp, 28.40Mbp, 35.95Mbp, 37.84Mbp, 39.38Mbp, 43.94Mbp, 46.59Mbp, 47.58Mbp, 47.93Mbp, 54.59Mbp, 54.92Mbp, 59.49Mbp, 66.96Mbp, 67.90Mbp, 70.71Mbp, 73.20Mbp, 74.21Mbp, 79.62Mbp, 82.65Mbp, 83.56Mbp, 85.33Mbp, 91.89Mbp, 103.39Mbp, 105.35Mbp, 112.85Mbp, 113.66Mbp, 124.66Mbp, 125.20Mbp, 129.58Mbp, 133.52Mbp, 134.61Mbp, 135.13Mbp, 138.30Mbp, 141.88Mbp, 149.74Mbp] 2025-01-31 09:53:12,600 DEBUG chr6 time: 266.64795951510314 s 2025-01-31 09:53:12,638 DEBUG Processing 502/699 atomic regions from SNP 150330 to 150930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,707 DEBUG Processing 579/729 atomic regions from SNP 173405 to 174005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:12,789 DEBUG chr6: Fitting background model for 36 segments 2025-01-31 09:53:12,792 DEBUG Processing 563/742 atomic regions from SNP 168725 to 169325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:12,915 DEBUG Processing 503/699 atomic regions from SNP 150630 to 151230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:12,999 DEBUG Processing 580/729 atomic regions from SNP 173705 to 174305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,053 DEBUG Processing 564/742 atomic regions from SNP 169025 to 169625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,159 DEBUG Processing 504/699 atomic regions from SNP 150930 to 151530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,210 DEBUG Processing 581/729 atomic regions from SNP 174005 to 174605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,283 DEBUG Processing 565/742 atomic regions from SNP 169325 to 169925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,396 DEBUG Processing 505/699 atomic regions from SNP 151230 to 151830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,420 DEBUG Processing 582/729 atomic regions from SNP 174305 to 174905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,516 DEBUG Processing 566/742 atomic regions from SNP 169625 to 170225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,632 DEBUG Processing 506/699 atomic regions from SNP 151530 to 152130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,651 DEBUG Processing 583/729 atomic regions from SNP 174605 to 175205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,751 DEBUG Processing 567/742 atomic regions from SNP 169925 to 170525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:13,873 DEBUG Processing 507/699 atomic regions from SNP 151830 to 152430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:13,906 DEBUG Processing 584/729 atomic regions from SNP 174905 to 175505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:13,984 DEBUG Processing 568/742 atomic regions from SNP 170225 to 170825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,109 DEBUG Processing 508/699 atomic regions from SNP 152130 to 152730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,159 DEBUG Processing 585/729 atomic regions from SNP 175205 to 175805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,226 DEBUG Processing 569/742 atomic regions from SNP 170525 to 171125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,355 DEBUG Processing 509/699 atomic regions from SNP 152430 to 153030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,433 DEBUG Processing 586/729 atomic regions from SNP 175505 to 176105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,470 DEBUG Processing 570/742 atomic regions from SNP 170825 to 171425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,586 DEBUG Processing 510/699 atomic regions from SNP 152730 to 153330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,685 DEBUG Processing 587/729 atomic regions from SNP 175805 to 176405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:14,693 DEBUG Processing 571/742 atomic regions from SNP 171125 to 171725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,810 DEBUG Processing 511/699 atomic regions from SNP 153030 to 153630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:14,923 DEBUG Processing 572/742 atomic regions from SNP 171425 to 172025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:14,932 DEBUG Processing 588/729 atomic regions from SNP 176105 to 176705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,031 DEBUG Processing 512/699 atomic regions from SNP 153330 to 153930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,143 DEBUG Processing 573/742 atomic regions from SNP 171725 to 172325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,172 DEBUG Processing 589/729 atomic regions from SNP 176405 to 177005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,251 DEBUG Processing 513/699 atomic regions from SNP 153630 to 154230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,382 DEBUG Processing 574/742 atomic regions from SNP 172025 to 172625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,428 DEBUG Processing 590/729 atomic regions from SNP 176705 to 177305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,534 DEBUG Processing 514/699 atomic regions from SNP 153930 to 154530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,697 DEBUG Processing 575/742 atomic regions from SNP 172325 to 172925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,739 DEBUG Processing 591/729 atomic regions from SNP 177005 to 177605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:15,799 DEBUG Processing 515/699 atomic regions from SNP 154230 to 154830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:15,932 DEBUG Processing 576/742 atomic regions from SNP 172625 to 173225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:15,971 DEBUG Processing 592/729 atomic regions from SNP 177305 to 177905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,028 DEBUG Processing 516/699 atomic regions from SNP 154530 to 155130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,163 DEBUG Processing 577/742 atomic regions from SNP 172925 to 173525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,201 DEBUG Processing 593/729 atomic regions from SNP 177605 to 178205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,259 DEBUG Processing 517/699 atomic regions from SNP 154830 to 155430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,387 DEBUG Processing 578/742 atomic regions from SNP 173225 to 173825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,447 DEBUG Processing 594/729 atomic regions from SNP 177905 to 178505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,482 DEBUG Processing 518/699 atomic regions from SNP 155130 to 155730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,605 DEBUG Processing 579/742 atomic regions from SNP 173525 to 174125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,695 DEBUG Processing 595/729 atomic regions from SNP 178205 to 178805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,701 DEBUG Processing 519/699 atomic regions from SNP 155430 to 156030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:16,822 DEBUG Processing 580/742 atomic regions from SNP 173825 to 174425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:16,858 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:53:16,925 DEBUG Processing 596/729 atomic regions from SNP 178505 to 179105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:16,941 DEBUG Processing 520/699 atomic regions from SNP 155730 to 156330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,039 DEBUG Processing 581/742 atomic regions from SNP 174125 to 174725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,170 DEBUG Processing 597/729 atomic regions from SNP 178805 to 179405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,186 DEBUG Processing 521/699 atomic regions from SNP 156030 to 156630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,262 DEBUG Processing 582/742 atomic regions from SNP 174425 to 175025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,407 DEBUG Processing 598/729 atomic regions from SNP 179105 to 179705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,442 DEBUG Processing 522/699 atomic regions from SNP 156330 to 156930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,496 DEBUG Processing 583/742 atomic regions from SNP 174725 to 175325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,635 DEBUG Processing 599/729 atomic regions from SNP 179405 to 180005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,685 DEBUG Processing 523/699 atomic regions from SNP 156630 to 157230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,723 DEBUG Processing 584/742 atomic regions from SNP 175025 to 175625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:17,856 DEBUG Processing 600/729 atomic regions from SNP 179705 to 180305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:17,909 DEBUG Processing 524/699 atomic regions from SNP 156930 to 157530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:17,956 DEBUG Processing 585/742 atomic regions from SNP 175325 to 175925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,080 DEBUG Processing 601/729 atomic regions from SNP 180005 to 180605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,142 DEBUG Processing 525/699 atomic regions from SNP 157230 to 157830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,193 DEBUG Processing 586/742 atomic regions from SNP 175625 to 176225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,303 DEBUG Processing 602/729 atomic regions from SNP 180305 to 180905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,369 DEBUG Processing 526/699 atomic regions from SNP 157530 to 158130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,424 DEBUG Processing 587/742 atomic regions from SNP 175925 to 176525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,533 DEBUG Processing 603/729 atomic regions from SNP 180605 to 181205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,590 DEBUG Processing 527/699 atomic regions from SNP 157830 to 158430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,649 DEBUG Processing 588/742 atomic regions from SNP 176225 to 176825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,745 DEBUG Processing 604/729 atomic regions from SNP 180905 to 181505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:18,818 DEBUG Processing 528/699 atomic regions from SNP 158130 to 158730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:18,876 DEBUG Processing 589/742 atomic regions from SNP 176525 to 177125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:18,957 DEBUG Processing 605/729 atomic regions from SNP 181205 to 181805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,041 DEBUG Processing 529/699 atomic regions from SNP 158430 to 159030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,097 DEBUG Processing 590/742 atomic regions from SNP 176825 to 177425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,165 DEBUG Processing 606/729 atomic regions from SNP 181505 to 182105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,257 DEBUG Processing 530/699 atomic regions from SNP 158730 to 159330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,315 DEBUG Processing 591/742 atomic regions from SNP 177125 to 177725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,374 DEBUG Processing 607/729 atomic regions from SNP 181805 to 182405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,479 DEBUG Processing 531/699 atomic regions from SNP 159030 to 159630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,537 DEBUG Processing 592/742 atomic regions from SNP 177425 to 178025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,584 DEBUG Processing 608/729 atomic regions from SNP 182105 to 182705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,696 DEBUG Processing 532/699 atomic regions from SNP 159330 to 159930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,750 DEBUG Processing 593/742 atomic regions from SNP 177725 to 178325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,794 DEBUG Processing 609/729 atomic regions from SNP 182405 to 183005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:19,912 DEBUG Processing 533/699 atomic regions from SNP 159630 to 160230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:19,972 DEBUG Processing 594/742 atomic regions from SNP 178025 to 178625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:19,981 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:53:20,008 DEBUG Processing 610/729 atomic regions from SNP 182705 to 183305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,151 DEBUG Processing 534/699 atomic regions from SNP 159930 to 160530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,198 DEBUG Processing 595/742 atomic regions from SNP 178325 to 178925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,247 DEBUG Processing 611/729 atomic regions from SNP 183005 to 183605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,375 DEBUG Processing 535/699 atomic regions from SNP 160230 to 160830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,423 DEBUG Processing 596/742 atomic regions from SNP 178625 to 179225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,476 DEBUG Processing 612/729 atomic regions from SNP 183305 to 183905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,596 DEBUG Processing 536/699 atomic regions from SNP 160530 to 161130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,649 DEBUG Processing 597/742 atomic regions from SNP 178925 to 179525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,694 DEBUG Processing 613/729 atomic regions from SNP 183605 to 184205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:20,825 DEBUG Processing 537/699 atomic regions from SNP 160830 to 161430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:20,875 DEBUG Processing 598/742 atomic regions from SNP 179225 to 179825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:20,913 DEBUG Processing 614/729 atomic regions from SNP 183905 to 184505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,053 DEBUG Processing 538/699 atomic regions from SNP 161130 to 161730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,103 DEBUG Processing 599/742 atomic regions from SNP 179525 to 180125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,132 DEBUG Processing 615/729 atomic regions from SNP 184205 to 184805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,283 DEBUG Processing 539/699 atomic regions from SNP 161430 to 162030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,332 DEBUG Processing 600/742 atomic regions from SNP 179825 to 180425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,352 DEBUG Processing 616/729 atomic regions from SNP 184505 to 185105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,513 DEBUG Processing 540/699 atomic regions from SNP 161730 to 162330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,567 DEBUG Processing 601/742 atomic regions from SNP 180125 to 180725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,569 DEBUG Processing 617/729 atomic regions from SNP 184805 to 185405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,734 DEBUG Processing 541/699 atomic regions from SNP 162030 to 162630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:21,792 DEBUG Processing 602/742 atomic regions from SNP 180425 to 181025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:21,807 DEBUG Processing 618/729 atomic regions from SNP 185105 to 185705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:21,961 DEBUG Processing 542/699 atomic regions from SNP 162330 to 162930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,019 DEBUG Processing 603/742 atomic regions from SNP 180725 to 181325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,055 DEBUG Processing 619/729 atomic regions from SNP 185405 to 186005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,186 DEBUG Processing 543/699 atomic regions from SNP 162630 to 163230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,244 DEBUG Processing 604/742 atomic regions from SNP 181025 to 181625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,301 DEBUG Processing 620/729 atomic regions from SNP 185705 to 186305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,408 DEBUG Processing 544/699 atomic regions from SNP 162930 to 163530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,469 DEBUG Processing 605/742 atomic regions from SNP 181325 to 181925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,535 DEBUG Processing 621/729 atomic regions from SNP 186005 to 186605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,635 DEBUG Processing 545/699 atomic regions from SNP 163230 to 163830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,698 DEBUG Processing 606/742 atomic regions from SNP 181625 to 182225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:22,781 DEBUG Processing 622/729 atomic regions from SNP 186305 to 186905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:22,862 DEBUG Processing 546/699 atomic regions from SNP 163530 to 164130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:22,928 DEBUG Processing 607/742 atomic regions from SNP 181925 to 182525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,021 DEBUG Processing 623/729 atomic regions from SNP 186605 to 187205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,080 DEBUG Processing 547/699 atomic regions from SNP 163830 to 164430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,151 DEBUG Processing 608/742 atomic regions from SNP 182225 to 182825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,251 DEBUG Processing 624/729 atomic regions from SNP 186905 to 187505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,299 DEBUG Processing 548/699 atomic regions from SNP 164130 to 164730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,372 DEBUG Processing 609/742 atomic regions from SNP 182525 to 183125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,495 DEBUG Processing 625/729 atomic regions from SNP 187205 to 187805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,539 DEBUG Processing 549/699 atomic regions from SNP 164430 to 165030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,610 DEBUG Processing 610/742 atomic regions from SNP 182825 to 183425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,730 DEBUG Processing 626/729 atomic regions from SNP 187505 to 188105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:23,800 DEBUG Processing 550/699 atomic regions from SNP 164730 to 165330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:23,840 DEBUG Processing 611/742 atomic regions from SNP 183125 to 183725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:23,939 DEBUG Processing 627/729 atomic regions from SNP 187805 to 188405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,053 DEBUG Processing 551/699 atomic regions from SNP 165030 to 165630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,070 DEBUG Processing 612/742 atomic regions from SNP 183425 to 184025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,150 DEBUG Processing 628/729 atomic regions from SNP 188105 to 188705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,285 DEBUG Processing 552/699 atomic regions from SNP 165330 to 165930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,300 DEBUG Processing 613/742 atomic regions from SNP 183725 to 184325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,365 DEBUG Processing 629/729 atomic regions from SNP 188405 to 189005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,517 DEBUG Processing 553/699 atomic regions from SNP 165630 to 166230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,532 DEBUG Processing 614/742 atomic regions from SNP 184025 to 184625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,582 DEBUG Processing 630/729 atomic regions from SNP 188705 to 189305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,746 DEBUG Processing 554/699 atomic regions from SNP 165930 to 166530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,757 DEBUG Processing 615/742 atomic regions from SNP 184325 to 184925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:24,804 DEBUG Processing 631/729 atomic regions from SNP 189005 to 189605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:24,973 DEBUG Processing 555/699 atomic regions from SNP 166230 to 166830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:24,980 DEBUG Processing 616/742 atomic regions from SNP 184625 to 185225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,020 DEBUG Processing 632/729 atomic regions from SNP 189305 to 189905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,193 DEBUG Processing 556/699 atomic regions from SNP 166530 to 167130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,197 DEBUG Processing 617/742 atomic regions from SNP 184925 to 185525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,231 DEBUG Processing 633/729 atomic regions from SNP 189605 to 190205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,417 DEBUG Processing 618/742 atomic regions from SNP 185225 to 185825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,429 DEBUG Processing 557/699 atomic regions from SNP 166830 to 167430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,445 DEBUG Processing 634/729 atomic regions from SNP 189905 to 190505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,634 DEBUG Processing 619/742 atomic regions from SNP 185525 to 186125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,660 DEBUG Processing 635/729 atomic regions from SNP 190205 to 190805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,667 DEBUG Processing 558/699 atomic regions from SNP 167130 to 167730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:25,850 DEBUG Processing 620/742 atomic regions from SNP 185825 to 186425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:25,874 DEBUG Processing 636/729 atomic regions from SNP 190505 to 191105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:25,884 DEBUG Processing 559/699 atomic regions from SNP 167430 to 168030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,065 DEBUG Processing 621/742 atomic regions from SNP 186125 to 186725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,087 DEBUG Processing 637/729 atomic regions from SNP 190805 to 191405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,101 DEBUG Processing 560/699 atomic regions from SNP 167730 to 168330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,274 DEBUG Processing 622/742 atomic regions from SNP 186425 to 187025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,296 DEBUG Processing 638/729 atomic regions from SNP 191105 to 191705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,319 DEBUG Processing 561/699 atomic regions from SNP 168030 to 168630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,487 DEBUG Processing 623/742 atomic regions from SNP 186725 to 187325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,510 DEBUG Processing 639/729 atomic regions from SNP 191405 to 192005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,533 DEBUG Processing 562/699 atomic regions from SNP 168330 to 168930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,701 DEBUG Processing 624/742 atomic regions from SNP 187025 to 187625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,729 DEBUG Processing 640/729 atomic regions from SNP 191705 to 192305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,750 DEBUG Processing 563/699 atomic regions from SNP 168630 to 169230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:26,914 DEBUG Processing 625/742 atomic regions from SNP 187325 to 187925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:26,944 DEBUG Processing 641/729 atomic regions from SNP 192005 to 192605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:26,979 DEBUG Processing 564/699 atomic regions from SNP 168930 to 169530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,127 DEBUG Processing 626/742 atomic regions from SNP 187625 to 188225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,155 DEBUG Processing 642/729 atomic regions from SNP 192305 to 192905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,202 DEBUG Processing 565/699 atomic regions from SNP 169230 to 169830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,342 DEBUG Processing 627/742 atomic regions from SNP 187925 to 188525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,367 DEBUG Processing 643/729 atomic regions from SNP 192605 to 193205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,443 DEBUG Processing 566/699 atomic regions from SNP 169530 to 170130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,553 DEBUG Processing 628/742 atomic regions from SNP 188225 to 188825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,582 DEBUG Processing 644/729 atomic regions from SNP 192905 to 193505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,659 DEBUG Processing 567/699 atomic regions from SNP 169830 to 170430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,765 DEBUG Processing 629/742 atomic regions from SNP 188525 to 189125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:27,796 DEBUG Processing 645/729 atomic regions from SNP 193205 to 193805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:27,875 DEBUG Processing 568/699 atomic regions from SNP 170130 to 170730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:27,978 DEBUG Processing 630/742 atomic regions from SNP 188825 to 189425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,009 DEBUG Processing 646/729 atomic regions from SNP 193505 to 194105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,096 DEBUG Processing 569/699 atomic regions from SNP 170430 to 171030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,190 DEBUG Processing 631/742 atomic regions from SNP 189125 to 189725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,221 DEBUG Processing 647/729 atomic regions from SNP 193805 to 194405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,312 DEBUG Processing 570/699 atomic regions from SNP 170730 to 171330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,407 DEBUG Processing 632/742 atomic regions from SNP 189425 to 190025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,430 DEBUG Processing 648/729 atomic regions from SNP 194105 to 194705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,535 DEBUG Processing 571/699 atomic regions from SNP 171030 to 171630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,622 DEBUG Processing 633/742 atomic regions from SNP 189725 to 190325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,644 DEBUG Processing 649/729 atomic regions from SNP 194405 to 195005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,757 DEBUG Processing 572/699 atomic regions from SNP 171330 to 171930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:28,840 DEBUG Processing 634/742 atomic regions from SNP 190025 to 190625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:28,851 DEBUG Processing 650/729 atomic regions from SNP 194705 to 195305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:28,979 DEBUG Processing 573/699 atomic regions from SNP 171630 to 172230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,058 DEBUG Processing 635/742 atomic regions from SNP 190325 to 190925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,064 DEBUG Processing 651/729 atomic regions from SNP 195005 to 195605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,200 DEBUG Processing 574/699 atomic regions from SNP 171930 to 172530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,280 DEBUG Processing 636/742 atomic regions from SNP 190625 to 191225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,284 DEBUG Processing 652/729 atomic regions from SNP 195305 to 195905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,421 DEBUG Processing 575/699 atomic regions from SNP 172230 to 172830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,497 DEBUG Processing 637/742 atomic regions from SNP 190925 to 191525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,506 DEBUG Processing 653/729 atomic regions from SNP 195605 to 196205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,637 DEBUG Processing 576/699 atomic regions from SNP 172530 to 173130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,718 DEBUG Processing 638/742 atomic regions from SNP 191225 to 191825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:29,759 DEBUG Processing 654/729 atomic regions from SNP 195905 to 196505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:29,860 DEBUG Processing 577/699 atomic regions from SNP 172830 to 173430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:29,940 DEBUG Processing 639/742 atomic regions from SNP 191525 to 192125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,011 DEBUG Processing 655/729 atomic regions from SNP 196205 to 196805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,108 DEBUG Processing 578/699 atomic regions from SNP 173130 to 173730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,160 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:53:30,161 DEBUG chr14: Signal quantile: 0.991. signal threshold: 11. Best RMSEA: 0.013 2025-01-31 09:53:30,173 DEBUG Processing 640/742 atomic regions from SNP 191825 to 192425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,264 DEBUG Processing 656/729 atomic regions from SNP 196505 to 197105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,357 DEBUG Processing 579/699 atomic regions from SNP 173430 to 174030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,408 DEBUG Processing 641/742 atomic regions from SNP 192125 to 192725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,506 DEBUG Processing 657/729 atomic regions from SNP 196805 to 197405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,596 DEBUG Processing 580/699 atomic regions from SNP 173730 to 174330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,637 DEBUG Processing 642/742 atomic regions from SNP 192425 to 193025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,735 DEBUG Processing 658/729 atomic regions from SNP 197105 to 197705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:30,841 DEBUG Processing 581/699 atomic regions from SNP 174030 to 174630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:30,870 DEBUG Processing 643/742 atomic regions from SNP 192725 to 193325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:30,952 DEBUG Processing 659/729 atomic regions from SNP 197405 to 198005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,087 DEBUG Processing 582/699 atomic regions from SNP 174330 to 174930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,096 DEBUG Processing 644/742 atomic regions from SNP 193025 to 193625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,174 DEBUG Processing 660/729 atomic regions from SNP 197705 to 198305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,325 DEBUG Processing 645/742 atomic regions from SNP 193325 to 193925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,338 DEBUG Processing 583/699 atomic regions from SNP 174630 to 175230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,394 DEBUG Processing 661/729 atomic regions from SNP 198005 to 198605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,552 DEBUG Processing 646/742 atomic regions from SNP 193625 to 194225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,597 DEBUG Processing 584/699 atomic regions from SNP 174930 to 175530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,614 DEBUG Processing 662/729 atomic regions from SNP 198305 to 198905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,773 DEBUG Processing 647/742 atomic regions from SNP 193925 to 194525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:31,833 DEBUG Processing 663/729 atomic regions from SNP 198605 to 199205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:31,855 DEBUG Processing 585/699 atomic regions from SNP 175230 to 175830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:31,991 DEBUG Processing 648/742 atomic regions from SNP 194225 to 194825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,055 DEBUG Processing 664/729 atomic regions from SNP 198905 to 199505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,116 DEBUG Processing 586/699 atomic regions from SNP 175530 to 176130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,208 DEBUG Processing 649/742 atomic regions from SNP 194525 to 195125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,297 DEBUG Processing 665/729 atomic regions from SNP 199205 to 199805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,314 DEBUG chr14 total SNP count: 199123 2025-01-31 09:53:32,314 DEBUG chr14 length: 124902244 2025-01-31 09:53:32,314 DEBUG ----------------------------------------- 2025-01-31 09:53:32,315 INFO Processing SNPs in chr14 2025-01-31 09:53:32,367 DEBUG Processing 587/699 atomic regions from SNP 175830 to 176430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,420 DEBUG Processing 650/742 atomic regions from SNP 194825 to 195425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,522 DEBUG Processing 666/729 atomic regions from SNP 199505 to 200105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,620 DEBUG Processing 588/699 atomic regions from SNP 176130 to 176730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,629 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 154), (154, 199123)] 2025-01-31 09:53:32,640 DEBUG Processing 651/742 atomic regions from SNP 195125 to 195725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,715 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:32,735 DEBUG Segmenting atomic regions: 2025-01-31 09:53:32,736 DEBUG Processing 667/729 atomic regions from SNP 199805 to 200405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:32,823 DEBUG Processing 1/1 atomic regions from SNP 0 to 153 for chr14 (subchromosome 1 of 2). 2025-01-31 09:53:32,829 DEBUG Unique SNPs positions in subchromosome 1: 154 2025-01-31 09:53:32,830 DEBUG Subchromosome time: 0.11481885600369424, subchromosome SNPs: 154 2025-01-31 09:53:32,854 DEBUG Processing 652/742 atomic regions from SNP 195425 to 196025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:32,871 DEBUG Processing 589/699 atomic regions from SNP 176430 to 177030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:32,881 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:32,944 DEBUG Processing 668/729 atomic regions from SNP 200105 to 200705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,080 DEBUG Processing 653/742 atomic regions from SNP 195725 to 196325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,118 DEBUG Processing 590/699 atomic regions from SNP 176730 to 177330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,168 DEBUG Processing 669/729 atomic regions from SNP 200405 to 201005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,326 DEBUG Processing 654/742 atomic regions from SNP 196025 to 196625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,366 DEBUG Processing 591/699 atomic regions from SNP 177030 to 177630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,413 DEBUG Processing 670/729 atomic regions from SNP 200705 to 201305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,537 DEBUG Processing 655/742 atomic regions from SNP 196325 to 196925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,614 DEBUG Processing 592/699 atomic regions from SNP 177330 to 177930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,666 DEBUG Processing 671/729 atomic regions from SNP 201005 to 201605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,746 DEBUG Processing 656/742 atomic regions from SNP 196625 to 197225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:33,861 DEBUG Processing 593/699 atomic regions from SNP 177630 to 178230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:33,911 DEBUG Processing 672/729 atomic regions from SNP 201305 to 201905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:33,956 DEBUG Processing 657/742 atomic regions from SNP 196925 to 197525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,109 DEBUG Processing 594/699 atomic regions from SNP 177930 to 178530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,160 DEBUG Processing 673/729 atomic regions from SNP 201605 to 202205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,170 DEBUG Processing 658/742 atomic regions from SNP 197225 to 197825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,327 DEBUG Processing 595/699 atomic regions from SNP 178230 to 178830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,383 DEBUG Processing 659/742 atomic regions from SNP 197525 to 198125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,405 DEBUG Processing 674/729 atomic regions from SNP 201905 to 202505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,575 DEBUG Processing 596/699 atomic regions from SNP 178530 to 179130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,598 DEBUG Processing 660/742 atomic regions from SNP 197825 to 198425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,648 DEBUG Processing 675/729 atomic regions from SNP 202205 to 202805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:34,807 DEBUG Processing 661/742 atomic regions from SNP 198125 to 198725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:34,809 DEBUG Processing 597/699 atomic regions from SNP 178830 to 179430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:34,893 DEBUG Processing 676/729 atomic regions from SNP 202505 to 203105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,020 DEBUG Processing 662/742 atomic regions from SNP 198425 to 199025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,043 DEBUG Processing 598/699 atomic regions from SNP 179130 to 179730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,139 DEBUG Processing 677/729 atomic regions from SNP 202805 to 203405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,236 DEBUG Processing 663/742 atomic regions from SNP 198725 to 199325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,280 DEBUG Processing 599/699 atomic regions from SNP 179430 to 180030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,386 DEBUG Processing 678/729 atomic regions from SNP 203105 to 203705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,475 DEBUG Processing 664/742 atomic regions from SNP 199025 to 199625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,499 DEBUG Processing 600/699 atomic regions from SNP 179730 to 180330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,616 DEBUG Processing 679/729 atomic regions from SNP 203405 to 204005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,707 DEBUG Processing 665/742 atomic regions from SNP 199325 to 199925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,718 DEBUG Processing 601/699 atomic regions from SNP 180030 to 180630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:35,837 DEBUG Processing 680/729 atomic regions from SNP 203705 to 204305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:35,930 DEBUG Processing 666/742 atomic regions from SNP 199625 to 200225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:35,937 DEBUG Processing 602/699 atomic regions from SNP 180330 to 180930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,063 DEBUG Processing 681/729 atomic regions from SNP 204005 to 204605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,148 DEBUG Processing 667/742 atomic regions from SNP 199925 to 200525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,157 DEBUG Processing 603/699 atomic regions from SNP 180630 to 181230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,287 DEBUG Processing 682/729 atomic regions from SNP 204305 to 204905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,374 DEBUG Processing 604/699 atomic regions from SNP 180930 to 181530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,394 DEBUG Processing 668/742 atomic regions from SNP 200225 to 200825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,520 DEBUG Processing 683/729 atomic regions from SNP 204605 to 205205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,593 DEBUG Processing 605/699 atomic regions from SNP 181230 to 181830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,635 DEBUG Processing 669/742 atomic regions from SNP 200525 to 201125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:36,757 DEBUG Processing 684/729 atomic regions from SNP 204905 to 205505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:36,810 DEBUG Processing 606/699 atomic regions from SNP 181530 to 182130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:36,856 DEBUG Processing 670/742 atomic regions from SNP 200825 to 201425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,000 DEBUG Processing 685/729 atomic regions from SNP 205205 to 205805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,023 DEBUG Processing 607/699 atomic regions from SNP 181830 to 182430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,073 DEBUG Processing 671/742 atomic regions from SNP 201125 to 201725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,238 DEBUG Processing 686/729 atomic regions from SNP 205505 to 206105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,240 DEBUG Processing 608/699 atomic regions from SNP 182130 to 182730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,292 DEBUG Processing 672/742 atomic regions from SNP 201425 to 202025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,454 DEBUG Processing 609/699 atomic regions from SNP 182430 to 183030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,483 DEBUG Processing 687/729 atomic regions from SNP 205805 to 206405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,511 DEBUG Processing 673/742 atomic regions from SNP 201725 to 202325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,678 DEBUG Processing 610/699 atomic regions from SNP 182730 to 183330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,721 DEBUG Processing 688/729 atomic regions from SNP 206105 to 206705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:37,724 DEBUG Processing 674/742 atomic regions from SNP 202025 to 202625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,921 DEBUG Processing 611/699 atomic regions from SNP 183030 to 183630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:37,955 DEBUG Processing 675/742 atomic regions from SNP 202325 to 202925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:37,970 DEBUG Processing 689/729 atomic regions from SNP 206405 to 207005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,170 DEBUG Processing 612/699 atomic regions from SNP 183330 to 183930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,204 DEBUG Processing 676/742 atomic regions from SNP 202625 to 203225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,217 DEBUG Processing 690/729 atomic regions from SNP 206705 to 207305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,390 DEBUG Processing 613/699 atomic regions from SNP 183630 to 184230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,426 DEBUG Processing 677/742 atomic regions from SNP 202925 to 203525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,465 DEBUG Processing 691/729 atomic regions from SNP 207005 to 207605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,611 DEBUG Processing 614/699 atomic regions from SNP 183930 to 184530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,651 DEBUG Processing 678/742 atomic regions from SNP 203225 to 203825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,723 DEBUG Processing 692/729 atomic regions from SNP 207305 to 207905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:38,849 DEBUG Processing 615/699 atomic regions from SNP 184230 to 184830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:38,880 DEBUG Processing 679/742 atomic regions from SNP 203525 to 204125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:38,924 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:53:38,926 DEBUG chr9: Signal quantile: 0.986. signal threshold: 12. Best RMSEA: 0.010 2025-01-31 09:53:38,970 DEBUG Processing 693/729 atomic regions from SNP 207605 to 208205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,076 DEBUG Processing 616/699 atomic regions from SNP 184530 to 185130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,102 DEBUG Processing 680/742 atomic regions from SNP 203825 to 204425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,217 DEBUG Processing 694/729 atomic regions from SNP 207905 to 208505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,300 DEBUG Processing 617/699 atomic regions from SNP 184830 to 185430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,320 DEBUG Processing 681/742 atomic regions from SNP 204125 to 204725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,470 DEBUG Processing 695/729 atomic regions from SNP 208205 to 208805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,540 DEBUG Processing 618/699 atomic regions from SNP 185130 to 185730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,550 DEBUG Processing 682/742 atomic regions from SNP 204425 to 205025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,720 DEBUG Processing 696/729 atomic regions from SNP 208505 to 209105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,762 DEBUG Processing 619/699 atomic regions from SNP 185430 to 186030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:39,785 DEBUG Processing 683/742 atomic regions from SNP 204725 to 205325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:39,973 DEBUG Processing 697/729 atomic regions from SNP 208805 to 209405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:39,980 DEBUG Processing 620/699 atomic regions from SNP 185730 to 186330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,002 DEBUG Processing 684/742 atomic regions from SNP 205025 to 205625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,209 DEBUG Processing 621/699 atomic regions from SNP 186030 to 186630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,223 DEBUG Processing 685/742 atomic regions from SNP 205325 to 205925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,226 DEBUG Processing 698/729 atomic regions from SNP 209105 to 209705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,436 DEBUG Processing 622/699 atomic regions from SNP 186330 to 186930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,444 DEBUG Processing 686/742 atomic regions from SNP 205625 to 206225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,468 DEBUG Processing 699/729 atomic regions from SNP 209405 to 210005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,660 DEBUG Processing 687/742 atomic regions from SNP 205925 to 206525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,671 DEBUG Processing 623/699 atomic regions from SNP 186630 to 187230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,710 DEBUG Processing 700/729 atomic regions from SNP 209705 to 210305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:40,875 DEBUG Processing 688/742 atomic regions from SNP 206225 to 206825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:40,910 DEBUG Processing 624/699 atomic regions from SNP 186930 to 187530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:40,946 DEBUG Processing 701/729 atomic regions from SNP 210005 to 210605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,089 DEBUG Processing 689/742 atomic regions from SNP 206525 to 207125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,138 DEBUG Processing 625/699 atomic regions from SNP 187230 to 187830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,146 DEBUG chr9 total SNP count: 216492 2025-01-31 09:53:41,146 DEBUG chr9 length: 124595110 2025-01-31 09:53:41,146 DEBUG ----------------------------------------- 2025-01-31 09:53:41,146 INFO Processing SNPs in chr9 2025-01-31 09:53:41,181 DEBUG Processing 702/729 atomic regions from SNP 210305 to 210905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,305 DEBUG Processing 690/742 atomic regions from SNP 206825 to 207425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,361 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216492)] 2025-01-31 09:53:41,383 DEBUG Processing 626/699 atomic regions from SNP 187530 to 188130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,408 DEBUG Processing 703/729 atomic regions from SNP 210605 to 211205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,508 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:41,515 DEBUG Processing 691/742 atomic regions from SNP 207125 to 207725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,606 DEBUG Processing 627/699 atomic regions from SNP 187830 to 188430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,656 DEBUG Processing 704/729 atomic regions from SNP 210905 to 211505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,728 DEBUG Processing 692/742 atomic regions from SNP 207425 to 208025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:41,824 DEBUG Processing 628/699 atomic regions from SNP 188130 to 188730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:41,887 DEBUG Processing 705/729 atomic regions from SNP 211205 to 211805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:41,943 DEBUG Processing 693/742 atomic regions from SNP 207725 to 208325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,062 DEBUG Processing 629/699 atomic regions from SNP 188430 to 189030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,110 DEBUG Processing 706/729 atomic regions from SNP 211505 to 212105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,166 DEBUG Processing 694/742 atomic regions from SNP 208025 to 208625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,302 DEBUG Processing 630/699 atomic regions from SNP 188730 to 189330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,332 DEBUG Processing 707/729 atomic regions from SNP 211805 to 212405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,380 DEBUG Processing 695/742 atomic regions from SNP 208325 to 208925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,519 DEBUG Processing 631/699 atomic regions from SNP 189030 to 189630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,556 DEBUG Processing 708/729 atomic regions from SNP 212105 to 212705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,598 DEBUG Processing 696/742 atomic regions from SNP 208625 to 209225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,739 DEBUG Processing 632/699 atomic regions from SNP 189330 to 189930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:42,781 DEBUG Processing 709/729 atomic regions from SNP 212405 to 213005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:42,815 DEBUG Processing 697/742 atomic regions from SNP 208925 to 209525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:42,957 DEBUG Processing 633/699 atomic regions from SNP 189630 to 190230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,007 DEBUG Processing 710/729 atomic regions from SNP 212705 to 213305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,042 DEBUG Processing 698/742 atomic regions from SNP 209225 to 209825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,177 DEBUG Processing 634/699 atomic regions from SNP 189930 to 190530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,234 DEBUG Processing 711/729 atomic regions from SNP 213005 to 213605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,284 DEBUG Processing 699/742 atomic regions from SNP 209525 to 210125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,395 DEBUG Processing 635/699 atomic regions from SNP 190230 to 190830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,473 DEBUG Processing 712/729 atomic regions from SNP 213305 to 213905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,509 DEBUG Processing 700/742 atomic regions from SNP 209825 to 210425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,612 DEBUG Processing 636/699 atomic regions from SNP 190530 to 191130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,702 DEBUG Processing 713/729 atomic regions from SNP 213605 to 214205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,741 DEBUG Processing 701/742 atomic regions from SNP 210125 to 210725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:43,829 DEBUG Processing 637/699 atomic regions from SNP 190830 to 191430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:43,936 DEBUG Processing 714/729 atomic regions from SNP 213905 to 214505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:43,952 DEBUG Processing 702/742 atomic regions from SNP 210425 to 211025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,046 DEBUG Processing 638/699 atomic regions from SNP 191130 to 191730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,166 DEBUG Processing 703/742 atomic regions from SNP 210725 to 211325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,172 DEBUG Processing 715/729 atomic regions from SNP 214205 to 214805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,261 DEBUG Processing 639/699 atomic regions from SNP 191430 to 192030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,379 DEBUG Processing 704/742 atomic regions from SNP 211025 to 211625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,399 DEBUG Processing 716/729 atomic regions from SNP 214505 to 215105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,479 DEBUG Processing 640/699 atomic regions from SNP 191730 to 192330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,592 DEBUG Processing 705/742 atomic regions from SNP 211325 to 211925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,641 DEBUG Processing 717/729 atomic regions from SNP 214805 to 215405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,690 DEBUG Processing 641/699 atomic regions from SNP 192030 to 192630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:44,806 DEBUG Processing 706/742 atomic regions from SNP 211625 to 212225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:44,860 DEBUG Processing 718/729 atomic regions from SNP 215105 to 215705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:44,928 DEBUG Processing 642/699 atomic regions from SNP 192330 to 192930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,020 DEBUG Processing 707/742 atomic regions from SNP 211925 to 212525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,075 DEBUG Processing 719/729 atomic regions from SNP 215405 to 216005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,142 DEBUG Processing 643/699 atomic regions from SNP 192630 to 193230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,232 DEBUG Processing 708/742 atomic regions from SNP 212225 to 212825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,285 DEBUG Processing 720/729 atomic regions from SNP 215705 to 216305 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,351 DEBUG Processing 644/699 atomic regions from SNP 192930 to 193530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,447 DEBUG Processing 709/742 atomic regions from SNP 212525 to 213125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,493 DEBUG Processing 721/729 atomic regions from SNP 216005 to 216605 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,570 DEBUG Processing 645/699 atomic regions from SNP 193230 to 193830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,660 DEBUG Processing 710/742 atomic regions from SNP 212825 to 213425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,700 DEBUG Processing 722/729 atomic regions from SNP 216305 to 216905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:45,801 DEBUG Processing 646/699 atomic regions from SNP 193530 to 194130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:45,874 DEBUG Processing 711/742 atomic regions from SNP 213125 to 213725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:45,909 DEBUG Processing 723/729 atomic regions from SNP 216605 to 217205 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,017 DEBUG Processing 647/699 atomic regions from SNP 193830 to 194430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,089 DEBUG Processing 712/742 atomic regions from SNP 213425 to 214025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,118 DEBUG Processing 724/729 atomic regions from SNP 216905 to 217505 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,235 DEBUG Processing 648/699 atomic regions from SNP 194130 to 194730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,303 DEBUG Processing 713/742 atomic regions from SNP 213725 to 214325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,328 DEBUG Processing 725/729 atomic regions from SNP 217205 to 217805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,459 DEBUG Processing 649/699 atomic regions from SNP 194430 to 195030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,517 DEBUG Processing 714/742 atomic regions from SNP 214025 to 214625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,540 DEBUG Processing 726/729 atomic regions from SNP 217505 to 218105 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,676 DEBUG Processing 650/699 atomic regions from SNP 194730 to 195330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,733 DEBUG Processing 715/742 atomic regions from SNP 214325 to 214925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,756 DEBUG Processing 727/729 atomic regions from SNP 217805 to 218405 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:46,895 DEBUG Processing 651/699 atomic regions from SNP 195030 to 195630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:46,946 DEBUG Processing 716/742 atomic regions from SNP 214625 to 215225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:46,997 DEBUG Processing 728/729 atomic regions from SNP 218105 to 218705 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,114 DEBUG Processing 652/699 atomic regions from SNP 195330 to 195930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,161 DEBUG Processing 717/742 atomic regions from SNP 214925 to 215525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,217 DEBUG Processing 729/729 atomic regions from SNP 218405 to 219005 for chr8 (subchromosome 1 of 1). 2025-01-31 09:53:47,334 DEBUG Processing 653/699 atomic regions from SNP 195630 to 196230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,342 DEBUG Unique SNPs positions in subchromosome 1: 219006 2025-01-31 09:53:47,374 DEBUG Processing 718/742 atomic regions from SNP 215225 to 215825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,553 DEBUG Processing 654/699 atomic regions from SNP 195930 to 196530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,585 DEBUG Processing 719/742 atomic regions from SNP 215525 to 216125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,775 DEBUG Processing 655/699 atomic regions from SNP 196230 to 196830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:47,800 DEBUG Processing 720/742 atomic regions from SNP 215825 to 216425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:47,995 DEBUG Processing 656/699 atomic regions from SNP 196530 to 197130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,016 DEBUG Processing 721/742 atomic regions from SNP 216125 to 216725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,213 DEBUG Processing 657/699 atomic regions from SNP 196830 to 197430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,237 DEBUG Processing 722/742 atomic regions from SNP 216425 to 217025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,433 DEBUG Processing 658/699 atomic regions from SNP 197130 to 197730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,488 DEBUG Processing 723/742 atomic regions from SNP 216725 to 217325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,650 DEBUG Processing 659/699 atomic regions from SNP 197430 to 198030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,737 DEBUG Processing 724/742 atomic regions from SNP 217025 to 217625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:48,871 DEBUG Processing 660/699 atomic regions from SNP 197730 to 198330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:48,992 DEBUG Processing 725/742 atomic regions from SNP 217325 to 217925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,101 DEBUG Processing 661/699 atomic regions from SNP 198030 to 198630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,230 DEBUG Processing 726/742 atomic regions from SNP 217625 to 218225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,328 DEBUG Processing 662/699 atomic regions from SNP 198330 to 198930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,475 DEBUG Processing 727/742 atomic regions from SNP 217925 to 218525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,542 DEBUG Processing 663/699 atomic regions from SNP 198630 to 199230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,713 DEBUG Processing 728/742 atomic regions from SNP 218225 to 218825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,760 DEBUG Processing 664/699 atomic regions from SNP 198930 to 199530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:49,944 DEBUG Processing 729/742 atomic regions from SNP 218525 to 219125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:49,983 DEBUG Processing 665/699 atomic regions from SNP 199230 to 199830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,192 DEBUG Processing 730/742 atomic regions from SNP 218825 to 219425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,201 DEBUG Processing 666/699 atomic regions from SNP 199530 to 200130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,420 DEBUG Processing 667/699 atomic regions from SNP 199830 to 200430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,441 DEBUG Processing 731/742 atomic regions from SNP 219125 to 219725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,638 DEBUG Processing 668/699 atomic regions from SNP 200130 to 200730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,689 DEBUG Processing 732/742 atomic regions from SNP 219425 to 220025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:50,874 DEBUG Processing 669/699 atomic regions from SNP 200430 to 201030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:50,930 DEBUG Processing 733/742 atomic regions from SNP 219725 to 220325 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,086 DEBUG Processing 670/699 atomic regions from SNP 200730 to 201330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,175 DEBUG Processing 734/742 atomic regions from SNP 220025 to 220625 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,299 DEBUG Processing 671/699 atomic regions from SNP 201030 to 201630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,414 DEBUG Processing 735/742 atomic regions from SNP 220325 to 220925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,511 DEBUG Processing 672/699 atomic regions from SNP 201330 to 201930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,627 DEBUG Processing 736/742 atomic regions from SNP 220625 to 221225 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,748 DEBUG Processing 673/699 atomic regions from SNP 201630 to 202230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:51,830 DEBUG Processing 737/742 atomic regions from SNP 220925 to 221525 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:51,989 DEBUG Processing 674/699 atomic regions from SNP 201930 to 202530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,044 DEBUG Processing 738/742 atomic regions from SNP 221225 to 221825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,240 DEBUG Processing 675/699 atomic regions from SNP 202230 to 202830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,254 DEBUG Processing 739/742 atomic regions from SNP 221525 to 222125 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,462 DEBUG Processing 740/742 atomic regions from SNP 221825 to 222425 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,491 DEBUG Processing 676/699 atomic regions from SNP 202530 to 203130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,674 DEBUG Processing 741/742 atomic regions from SNP 222125 to 222725 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,739 DEBUG Processing 677/699 atomic regions from SNP 202830 to 203430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:52,882 DEBUG Processing 742/742 atomic regions from SNP 222425 to 223025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:53:52,984 DEBUG Processing 678/699 atomic regions from SNP 203130 to 203730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,000 DEBUG Unique SNPs positions in subchromosome 1: 223026 2025-01-31 09:53:53,231 DEBUG Processing 679/699 atomic regions from SNP 203430 to 204030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,472 DEBUG Processing 680/699 atomic regions from SNP 203730 to 204330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,707 DEBUG Processing 681/699 atomic regions from SNP 204030 to 204630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:53,938 DEBUG Processing 682/699 atomic regions from SNP 204330 to 204930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,180 DEBUG Processing 683/699 atomic regions from SNP 204630 to 205230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,410 DEBUG Processing 684/699 atomic regions from SNP 204930 to 205530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,623 DEBUG Processing 685/699 atomic regions from SNP 205230 to 205830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:54,837 DEBUG Processing 686/699 atomic regions from SNP 205530 to 206130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,051 DEBUG Processing 687/699 atomic regions from SNP 205830 to 206430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,266 DEBUG Processing 688/699 atomic regions from SNP 206130 to 206730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,487 DEBUG Processing 689/699 atomic regions from SNP 206430 to 207030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,720 DEBUG Processing 690/699 atomic regions from SNP 206730 to 207330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:55,953 DEBUG Processing 691/699 atomic regions from SNP 207030 to 207630 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,185 DEBUG Processing 692/699 atomic regions from SNP 207330 to 207930 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,404 DEBUG Processing 693/699 atomic regions from SNP 207630 to 208230 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,619 DEBUG Processing 694/699 atomic regions from SNP 207930 to 208530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:56,832 DEBUG Processing 695/699 atomic regions from SNP 208230 to 208830 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,049 DEBUG Processing 696/699 atomic regions from SNP 208530 to 209130 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,266 DEBUG Processing 697/699 atomic regions from SNP 208830 to 209430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,271 DEBUG Segmenting atomic regions: 2025-01-31 09:53:57,359 DEBUG Processing 1/662 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,493 DEBUG Processing 698/699 atomic regions from SNP 209130 to 209730 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,556 DEBUG Processing 2/662 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,716 DEBUG Processing 699/699 atomic regions from SNP 209430 to 210030 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:57,753 DEBUG Processing 3/662 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,840 DEBUG Unique SNPs positions in subchromosome 3: 210031 2025-01-31 09:53:57,960 DEBUG Processing 4/662 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,177 DEBUG Processing 5/662 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,378 DEBUG Processing 6/662 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,571 DEBUG Processing 7/662 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,771 DEBUG Processing 8/662 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,968 DEBUG Processing 9/662 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,161 DEBUG Processing 10/662 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,355 DEBUG Processing 11/662 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,547 DEBUG Processing 12/662 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,740 DEBUG Processing 13/662 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,934 DEBUG Processing 14/662 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,130 DEBUG Processing 15/662 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,323 DEBUG Processing 16/662 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,514 DEBUG Processing 17/662 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,708 DEBUG Processing 18/662 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,898 DEBUG Processing 19/662 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,087 DEBUG Processing 20/662 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,277 DEBUG Processing 21/662 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,466 DEBUG Processing 22/662 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,654 DEBUG Processing 23/662 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,847 DEBUG Processing 24/662 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,037 DEBUG Processing 25/662 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,229 DEBUG Processing 26/662 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,420 DEBUG Processing 27/662 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,616 DEBUG Processing 28/662 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,809 DEBUG Processing 29/662 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,010 DEBUG Processing 30/662 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,203 DEBUG Processing 31/662 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,398 DEBUG Processing 32/662 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,590 DEBUG Processing 33/662 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,781 DEBUG Processing 34/662 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,972 DEBUG Processing 35/662 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,170 DEBUG Processing 36/662 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,364 DEBUG Processing 37/662 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,562 DEBUG Processing 38/662 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,771 DEBUG Processing 39/662 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,982 DEBUG Processing 40/662 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,174 DEBUG Processing 41/662 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,370 DEBUG Processing 42/662 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,567 DEBUG Processing 43/662 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,762 DEBUG Processing 44/662 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,960 DEBUG Processing 45/662 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,159 DEBUG Processing 46/662 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,354 DEBUG Processing 47/662 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,551 DEBUG Processing 48/662 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,743 DEBUG Processing 49/662 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,934 DEBUG Processing 50/662 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,126 DEBUG Processing 51/662 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,328 DEBUG Processing 52/662 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,473 DEBUG Segmenting atomic regions: 2025-01-31 09:54:07,531 DEBUG Processing 53/662 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,567 DEBUG Processing 1/720 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,725 DEBUG Processing 54/662 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,771 DEBUG Processing 2/720 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,918 DEBUG Processing 55/662 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,973 DEBUG Processing 3/720 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,113 DEBUG Processing 56/662 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,179 DEBUG Processing 4/720 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,305 DEBUG Processing 57/662 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,384 DEBUG Processing 5/720 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,501 DEBUG Processing 58/662 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,590 DEBUG Processing 6/720 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,692 DEBUG Processing 59/662 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,794 DEBUG Processing 7/720 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,843 DEBUG Subchromosome time: 214.60100199410226, subchromosome SNPs: 223026 2025-01-31 09:54:08,843 DEBUG Estimated BADs: [0.73, 2.92, 0.49, 1.46, 0.37, 1.46, 0.73, 1.46, 2.92, 1.46, 0.24, 0.73, 2.92, 4.38, 0.73, 0.24, 1.46, 2.92, 14.62, 1.46, 13.15, 0.73, 2.92, 0.37, 1.46, 0.37, 0.73, 1.46, 4.38, 1.46, 0.49, 8.77, 2.92, 0.49] SNP counts: [1431, 3402, 2760, 12673, 3304, 20765, 17080, 2851, 6475, 5976, 5077, 13078, 2815, 7033, 1135, 3254, 16544, 7323, 3844, 16273, 222, 3366, 8236, 911, 2981, 13205, 11399, 5535, 1367, 11098, 5187, 3551, 839, 2036] SNP IDs counts: [1431, 3402, 2760, 12673, 3304, 20765, 17080, 2851, 6475, 5976, 5077, 13078, 2815, 7033, 1135, 3254, 16544, 7323, 3844, 16273, 222, 3366, 8236, 911, 2981, 13205, 11399, 5535, 1367, 11098, 5187, 3551, 839, 2036] Critical gap: 620104bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.94Mbp, 5.85Mbp, 7.60Mbp, 14.73Mbp, 16.77Mbp, 28.49Mbp, 38.49Mbp, 40.11Mbp, 43.57Mbp, 46.89Mbp, 50.13Mbp, 58.22Mbp, 59.76Mbp, 63.48Mbp, 64.13Mbp, 66.26Mbp, 75.55Mbp, 79.65Mbp, 81.65Mbp, 91.07Mbp, 91.19Mbp, 93.04Mbp, 97.45Mbp, 97.99Mbp, 99.67Mbp, 107.60Mbp, 113.98Mbp, 117.02Mbp, 117.76Mbp, 123.93Mbp, 126.89Mbp, 128.77Mbp, 129.29Mbp, 130.69Mbp] 2025-01-31 09:54:08,843 DEBUG chr10 time: 214.60156184108928 s 2025-01-31 09:54:08,893 DEBUG Processing 60/662 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,966 DEBUG chr10: Fitting background model for 34 segments 2025-01-31 09:54:09,001 DEBUG Processing 8/720 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,091 DEBUG Processing 61/662 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,202 DEBUG Processing 9/720 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,284 DEBUG Processing 62/662 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,406 DEBUG Processing 10/720 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,482 DEBUG Processing 63/662 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,615 DEBUG Processing 11/720 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,695 DEBUG Processing 64/662 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,821 DEBUG Processing 12/720 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,887 DEBUG Processing 65/662 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,031 DEBUG Processing 13/720 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,077 DEBUG Processing 66/662 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,242 DEBUG Processing 14/720 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,266 DEBUG Processing 67/662 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,456 DEBUG Processing 68/662 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,458 DEBUG Processing 15/720 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,652 DEBUG Processing 69/662 atomic regions from SNP 20468 to 21068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,668 DEBUG Processing 16/720 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,847 DEBUG Processing 70/662 atomic regions from SNP 20768 to 21368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,878 DEBUG Processing 17/720 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,068 DEBUG Processing 71/662 atomic regions from SNP 21068 to 21668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,094 DEBUG Processing 18/720 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,291 DEBUG Processing 72/662 atomic regions from SNP 21368 to 21968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,309 DEBUG Processing 19/720 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,514 DEBUG Processing 73/662 atomic regions from SNP 21668 to 22268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,522 DEBUG Processing 20/720 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,734 DEBUG Processing 21/720 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,737 DEBUG Processing 74/662 atomic regions from SNP 21968 to 22568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,945 DEBUG Processing 22/720 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,955 DEBUG Processing 75/662 atomic regions from SNP 22268 to 22868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,159 DEBUG Processing 23/720 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,166 DEBUG Processing 76/662 atomic regions from SNP 22568 to 23168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,373 DEBUG Processing 24/720 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,386 DEBUG Processing 77/662 atomic regions from SNP 22868 to 23468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,591 DEBUG Processing 25/720 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,610 DEBUG Processing 78/662 atomic regions from SNP 23168 to 23768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,807 DEBUG Processing 26/720 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,837 DEBUG Processing 79/662 atomic regions from SNP 23468 to 24068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,040 DEBUG Processing 27/720 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,052 DEBUG Processing 80/662 atomic regions from SNP 23768 to 24368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,079 DEBUG Subchromosome time: 217.09813026397023, subchromosome SNPs: 219006 2025-01-31 09:54:13,080 DEBUG Estimated BADs: [4.10, 0.20, 0.68, 4.10, 0.41, 2.05, 4.10, 0.41, 1.02, 2.05, 0.34, 1.02, 0.41, 2.05, 12.29, 1.02, 0.23, 1.02, 12.29, 0.51, 20.48, 1.02, 2.05, 12.29, 4.10, 0.68, 6.14, 0.51, 2.05, 6.14, 20.48, 2.05, 6.14, 0.41, 1.02, 6.14, 2.05, 6.14, 1.02, 4.10, 12.29, 6.14, 2.05] SNP counts: [2849, 3840, 3953, 11051, 4209, 10548, 3837, 4806, 5332, 7002, 4171, 2732, 3258, 7319, 164, 4529, 4796, 6711, 173, 5583, 105, 8723, 6120, 3190, 3591, 1946, 562, 2712, 11706, 2310, 882, 16218, 3793, 12078, 2773, 5033, 6314, 2434, 8494, 4689, 8964, 5104, 4402] SNP IDs counts: [2849, 3840, 3953, 11051, 4209, 10548, 3837, 4806, 5332, 7002, 4171, 2732, 3258, 7319, 164, 4529, 4796, 6711, 173, 5583, 105, 8723, 6120, 3190, 3591, 1946, 562, 2712, 11706, 2310, 882, 16218, 3793, 12078, 2773, 5033, 6314, 2434, 8494, 4689, 8964, 5104, 4402] Critical gap: 619561bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.78Mbp, 7.27Mbp, 9.52Mbp, 15.42Mbp, 17.92Mbp, 25.55Mbp, 27.64Mbp, 30.55Mbp, 33.59Mbp, 37.40Mbp, 39.95Mbp, 41.56Mbp, 43.53Mbp, 47.64Mbp, 47.72Mbp, 50.20Mbp, 53.18Mbp, 57.44Mbp, 57.53Mbp, 60.94Mbp, 61.00Mbp, 66.11Mbp, 69.75Mbp, 71.55Mbp, 73.73Mbp, 74.96Mbp, 75.28Mbp, 76.90Mbp, 83.39Mbp, 84.63Mbp, 85.09Mbp, 93.88Mbp, 95.89Mbp, 103.02Mbp, 104.53Mbp, 107.29Mbp, 110.64Mbp, 111.92Mbp, 116.86Mbp, 119.34Mbp, 124.12Mbp, 126.83Mbp, 129.40Mbp] 2025-01-31 09:54:13,080 DEBUG chr8 time: 217.0995212259004 s 2025-01-31 09:54:13,203 DEBUG chr8: Fitting background model for 43 segments 2025-01-31 09:54:13,246 DEBUG Processing 81/662 atomic regions from SNP 24068 to 24668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,275 DEBUG Processing 28/720 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,467 DEBUG Processing 82/662 atomic regions from SNP 24368 to 24968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,486 DEBUG Processing 29/720 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,692 DEBUG Processing 30/720 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,693 DEBUG Processing 83/662 atomic regions from SNP 24668 to 25268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,904 DEBUG Processing 31/720 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,922 DEBUG Processing 84/662 atomic regions from SNP 24968 to 25568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,117 DEBUG Processing 32/720 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,147 DEBUG Processing 85/662 atomic regions from SNP 25268 to 25868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,332 DEBUG Processing 33/720 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,364 DEBUG Processing 86/662 atomic regions from SNP 25568 to 26168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,549 DEBUG Processing 34/720 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,563 DEBUG Processing 87/662 atomic regions from SNP 25868 to 26468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,762 DEBUG Processing 35/720 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,763 DEBUG Processing 88/662 atomic regions from SNP 26168 to 26768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,963 DEBUG Processing 89/662 atomic regions from SNP 26468 to 27068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,971 DEBUG Processing 36/720 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,161 DEBUG Processing 90/662 atomic regions from SNP 26768 to 27368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,181 DEBUG Processing 37/720 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,368 DEBUG Processing 91/662 atomic regions from SNP 27068 to 27668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,389 DEBUG Processing 38/720 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,564 DEBUG Processing 92/662 atomic regions from SNP 27368 to 27968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,604 DEBUG Processing 39/720 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,757 DEBUG Processing 93/662 atomic regions from SNP 27668 to 28268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,820 DEBUG Processing 40/720 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,950 DEBUG Processing 94/662 atomic regions from SNP 27968 to 28568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,036 DEBUG Processing 41/720 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,143 DEBUG Processing 95/662 atomic regions from SNP 28268 to 28868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,253 DEBUG Processing 42/720 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,337 DEBUG Processing 96/662 atomic regions from SNP 28568 to 29168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,466 DEBUG Processing 43/720 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,528 DEBUG Processing 97/662 atomic regions from SNP 28868 to 29468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,676 DEBUG Processing 44/720 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,719 DEBUG Processing 98/662 atomic regions from SNP 29168 to 29768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,886 DEBUG Processing 45/720 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,912 DEBUG Processing 99/662 atomic regions from SNP 29468 to 30068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,096 DEBUG Processing 46/720 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,124 DEBUG Processing 100/662 atomic regions from SNP 29768 to 30368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,308 DEBUG Processing 47/720 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,351 DEBUG Processing 101/662 atomic regions from SNP 30068 to 30668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,386 DEBUG Subchromosome time: 207.86198539694306, subchromosome SNPs: 210031 2025-01-31 09:54:17,387 DEBUG Estimated BADs: [0.91, 7.27, 0.36, 3.63, 0.45, 12.72, 0.45, 7.27, 0.91, 10.90, 0.91, 0.00, 0.61, 7.27, 0.91, 7.27, 0.45, 3.63, 0.91, 7.27, 0.91, 3.63, 12.72, 5.45, 0.36, 3.63, 0.45, 1.82, 0.30, 1.82, 0.36, 1.82, 0.91, 10.90, 1.82, 0.61, 1.82, 5.45, 1.82, 0.26, 1.82, 0.30, 1.82, 0.23, 1.82, 3.63, 0.91, 3.63, 1.82, 7.27, 1.82, 3.63, 1.82, 9.09, 3.63] SNP counts: [843, 2345, 792, 2555, 3918, 312, 3246, 2224, 2491, 1543, 444, 5, 1394, 3067, 1760, 7028, 2144, 3717, 4220, 423, 7578, 1020, 2324, 2862, 1864, 2734, 2685, 905, 5390, 2119, 9890, 10498, 8016, 222, 4645, 3317, 1941, 3161, 7226, 5977, 3349, 2949, 1532, 4161, 4458, 9029, 9394, 3569, 26534, 5871, 3847, 5711, 13100, 1888, 6512] SNP IDs counts: [843, 2345, 792, 2555, 3918, 312, 3246, 2224, 2491, 1543, 444, 5, 1394, 3067, 1760, 7028, 2144, 3717, 4220, 423, 7578, 1020, 2324, 2862, 1864, 2734, 2685, 905, 5390, 2119, 9890, 10498, 8016, 222, 4645, 3317, 1941, 3161, 7226, 5977, 3349, 2949, 1532, 4161, 4458, 9029, 9394, 3569, 26534, 5871, 3847, 5711, 13100, 1888, 6512] Critical gap: 667965bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.59Mbp, 5.13Mbp, 5.71Mbp, 7.30Mbp, 12.90Mbp, 13.06Mbp, 15.90Mbp, 17.07Mbp, 19.00Mbp, 19.81Mbp, 20.09Mbp[0.85Mbp], 20.98Mbp[1.80Mbp], 24.25Mbp, 25.93Mbp, 27.13Mbp, 30.98Mbp, 33.78Mbp, 35.82Mbp, 38.07Mbp, 38.29Mbp, 43.88Mbp, 44.46Mbp, 45.68Mbp, 47.17Mbp, 48.44Mbp, 49.92Mbp, 51.58Mbp, 52.07Mbp, 55.40Mbp, 56.66Mbp, 63.21Mbp, 69.00Mbp, 73.52Mbp, 73.63Mbp, 76.27Mbp, 78.19Mbp, 79.23Mbp, 80.89Mbp, 84.89Mbp, 88.59Mbp, 90.49Mbp, 92.17Mbp, 93.04Mbp, 95.62Mbp, 98.06Mbp, 102.86Mbp, 109.09Mbp, 110.98Mbp, 125.39Mbp, 128.51Mbp, 130.62Mbp, 133.67Mbp, 140.82Mbp, 141.86Mbp, 145.44Mbp] 2025-01-31 09:54:17,387 DEBUG chr7 time: 207.86261558393016 s 2025-01-31 09:54:17,526 DEBUG Processing 48/720 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,527 DEBUG chr7: Fitting background model for 54 segments 2025-01-31 09:54:17,551 DEBUG Processing 102/662 atomic regions from SNP 30368 to 30968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,746 DEBUG Processing 103/662 atomic regions from SNP 30668 to 31268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,747 DEBUG Processing 49/720 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,950 DEBUG Processing 104/662 atomic regions from SNP 30968 to 31568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,963 DEBUG Processing 50/720 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,143 DEBUG Processing 105/662 atomic regions from SNP 31268 to 31868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,177 DEBUG Processing 51/720 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,341 DEBUG Processing 106/662 atomic regions from SNP 31568 to 32168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,388 DEBUG Processing 52/720 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,548 DEBUG Processing 107/662 atomic regions from SNP 31868 to 32468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,601 DEBUG Processing 53/720 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,745 DEBUG Processing 108/662 atomic regions from SNP 32168 to 32768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,815 DEBUG Processing 54/720 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,951 DEBUG Processing 109/662 atomic regions from SNP 32468 to 33068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,027 DEBUG Processing 55/720 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,163 DEBUG Processing 110/662 atomic regions from SNP 32768 to 33368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,239 DEBUG Processing 56/720 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,389 DEBUG Processing 111/662 atomic regions from SNP 33068 to 33668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,453 DEBUG Processing 57/720 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,604 DEBUG Processing 112/662 atomic regions from SNP 33368 to 33968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,676 DEBUG Processing 58/720 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,813 DEBUG Processing 113/662 atomic regions from SNP 33668 to 34268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,898 DEBUG Processing 59/720 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,020 DEBUG Processing 114/662 atomic regions from SNP 33968 to 34568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,120 DEBUG Processing 60/720 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,224 DEBUG Processing 115/662 atomic regions from SNP 34268 to 34868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,334 DEBUG Processing 61/720 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,430 DEBUG Processing 116/662 atomic regions from SNP 34568 to 35168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,549 DEBUG Processing 62/720 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,637 DEBUG Processing 117/662 atomic regions from SNP 34868 to 35468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,777 DEBUG Processing 63/720 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,841 DEBUG Processing 118/662 atomic regions from SNP 35168 to 35768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,987 DEBUG Processing 64/720 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,040 DEBUG Processing 119/662 atomic regions from SNP 35468 to 36068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,199 DEBUG Processing 65/720 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,240 DEBUG Processing 120/662 atomic regions from SNP 35768 to 36368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,414 DEBUG Processing 66/720 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,435 DEBUG Processing 121/662 atomic regions from SNP 36068 to 36668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,635 DEBUG Processing 122/662 atomic regions from SNP 36368 to 36968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,644 DEBUG Processing 67/720 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,835 DEBUG Processing 123/662 atomic regions from SNP 36668 to 37268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,887 DEBUG Processing 68/720 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,037 DEBUG Processing 124/662 atomic regions from SNP 36968 to 37568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,097 DEBUG Processing 69/720 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,224 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:54:22,240 DEBUG Processing 125/662 atomic regions from SNP 37268 to 37868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,308 DEBUG Processing 70/720 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,448 DEBUG Processing 126/662 atomic regions from SNP 37568 to 38168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,524 DEBUG Processing 71/720 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,655 DEBUG Processing 127/662 atomic regions from SNP 37868 to 38468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,738 DEBUG Processing 72/720 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,863 DEBUG Processing 128/662 atomic regions from SNP 38168 to 38768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,957 DEBUG Processing 73/720 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,066 DEBUG Processing 129/662 atomic regions from SNP 38468 to 39068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,174 DEBUG Processing 74/720 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,268 DEBUG Processing 130/662 atomic regions from SNP 38768 to 39368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,386 DEBUG Processing 75/720 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,480 DEBUG Processing 131/662 atomic regions from SNP 39068 to 39668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,600 DEBUG Processing 76/720 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,707 DEBUG Processing 132/662 atomic regions from SNP 39368 to 39968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,813 DEBUG Processing 77/720 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,931 DEBUG Processing 133/662 atomic regions from SNP 39668 to 40268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,030 DEBUG Processing 78/720 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,155 DEBUG Processing 134/662 atomic regions from SNP 39968 to 40568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,249 DEBUG Processing 79/720 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,385 DEBUG Processing 135/662 atomic regions from SNP 40268 to 40868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,467 DEBUG Processing 80/720 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,623 DEBUG Processing 136/662 atomic regions from SNP 40568 to 41168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,683 DEBUG Processing 81/720 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,852 DEBUG Processing 137/662 atomic regions from SNP 40868 to 41468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,903 DEBUG Processing 82/720 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,080 DEBUG Processing 138/662 atomic regions from SNP 41168 to 41768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,121 DEBUG Processing 83/720 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,313 DEBUG Processing 139/662 atomic regions from SNP 41468 to 42068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,339 DEBUG Processing 84/720 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,549 DEBUG Processing 140/662 atomic regions from SNP 41768 to 42368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,554 DEBUG Processing 85/720 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,770 DEBUG Processing 86/720 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,780 DEBUG Processing 141/662 atomic regions from SNP 42068 to 42668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,986 DEBUG Processing 87/720 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,997 DEBUG Processing 142/662 atomic regions from SNP 42368 to 42968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,204 DEBUG Processing 143/662 atomic regions from SNP 42668 to 43268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,206 DEBUG Processing 88/720 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,420 DEBUG Processing 144/662 atomic regions from SNP 42968 to 43568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,423 DEBUG Processing 89/720 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,646 DEBUG Processing 90/720 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,655 DEBUG Processing 145/662 atomic regions from SNP 43268 to 43868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,865 DEBUG Processing 91/720 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,889 DEBUG Processing 146/662 atomic regions from SNP 43568 to 44168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,088 DEBUG Processing 92/720 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,096 DEBUG Processing 147/662 atomic regions from SNP 43868 to 44468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,304 DEBUG Processing 93/720 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,307 DEBUG Processing 148/662 atomic regions from SNP 44168 to 44768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,509 DEBUG Processing 149/662 atomic regions from SNP 44468 to 45068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,517 DEBUG Processing 94/720 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,711 DEBUG Processing 150/662 atomic regions from SNP 44768 to 45368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,729 DEBUG Processing 95/720 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,911 DEBUG Processing 151/662 atomic regions from SNP 45068 to 45668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,944 DEBUG Processing 96/720 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,118 DEBUG Processing 152/662 atomic regions from SNP 45368 to 45968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,161 DEBUG Processing 97/720 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,314 DEBUG Processing 153/662 atomic regions from SNP 45668 to 46268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,391 DEBUG Processing 98/720 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,519 DEBUG Processing 154/662 atomic regions from SNP 45968 to 46568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,641 DEBUG Processing 99/720 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,710 DEBUG Processing 155/662 atomic regions from SNP 46268 to 46868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,891 DEBUG Processing 100/720 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,904 DEBUG Processing 156/662 atomic regions from SNP 46568 to 47168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,097 DEBUG Processing 157/662 atomic regions from SNP 46868 to 47468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,141 DEBUG Processing 101/720 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,308 DEBUG Processing 158/662 atomic regions from SNP 47168 to 47768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,395 DEBUG Processing 102/720 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,516 DEBUG Processing 159/662 atomic regions from SNP 47468 to 48068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,644 DEBUG Processing 103/720 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,732 DEBUG Processing 160/662 atomic regions from SNP 47768 to 48368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,897 DEBUG Processing 104/720 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,969 DEBUG Processing 161/662 atomic regions from SNP 48068 to 48668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,145 DEBUG Processing 105/720 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,196 DEBUG Processing 162/662 atomic regions from SNP 48368 to 48968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,402 DEBUG Processing 106/720 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,404 DEBUG Processing 163/662 atomic regions from SNP 48668 to 49268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,608 DEBUG Processing 164/662 atomic regions from SNP 48968 to 49568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,659 DEBUG Processing 107/720 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,812 DEBUG Processing 165/662 atomic regions from SNP 49268 to 49868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,913 DEBUG Processing 108/720 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,017 DEBUG Processing 166/662 atomic regions from SNP 49568 to 50168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,150 DEBUG Processing 109/720 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,219 DEBUG Processing 167/662 atomic regions from SNP 49868 to 50468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,396 DEBUG Processing 110/720 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,426 DEBUG Processing 168/662 atomic regions from SNP 50168 to 50768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,622 DEBUG Processing 111/720 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,628 DEBUG Processing 169/662 atomic regions from SNP 50468 to 51068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,833 DEBUG Processing 170/662 atomic regions from SNP 50768 to 51368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,840 DEBUG Processing 112/720 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,038 DEBUG Processing 171/662 atomic regions from SNP 51068 to 51668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,059 DEBUG Processing 113/720 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,241 DEBUG Processing 172/662 atomic regions from SNP 51368 to 51968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,275 DEBUG Processing 114/720 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,452 DEBUG Processing 173/662 atomic regions from SNP 51668 to 52268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,493 DEBUG Processing 115/720 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,664 DEBUG Processing 174/662 atomic regions from SNP 51968 to 52568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,712 DEBUG Processing 116/720 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,875 DEBUG Processing 175/662 atomic regions from SNP 52268 to 52868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,930 DEBUG Processing 117/720 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,085 DEBUG Processing 176/662 atomic regions from SNP 52568 to 53168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,147 DEBUG Processing 118/720 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,281 DEBUG Processing 177/662 atomic regions from SNP 52868 to 53468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,357 DEBUG Processing 119/720 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,474 DEBUG Processing 178/662 atomic regions from SNP 53168 to 53768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,569 DEBUG Processing 120/720 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,670 DEBUG Processing 179/662 atomic regions from SNP 53468 to 54068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,793 DEBUG Processing 121/720 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,870 DEBUG Processing 180/662 atomic regions from SNP 53768 to 54368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,012 DEBUG Processing 122/720 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,064 DEBUG Processing 181/662 atomic regions from SNP 54068 to 54668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,238 DEBUG Processing 123/720 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,265 DEBUG Processing 182/662 atomic regions from SNP 54368 to 54968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,457 DEBUG Processing 124/720 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,464 DEBUG Processing 183/662 atomic regions from SNP 54668 to 55268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,654 DEBUG Processing 184/662 atomic regions from SNP 54968 to 55568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,674 DEBUG Processing 125/720 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,846 DEBUG Processing 185/662 atomic regions from SNP 55268 to 55868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,907 DEBUG Processing 126/720 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,046 DEBUG Processing 186/662 atomic regions from SNP 55568 to 56168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,126 DEBUG Processing 127/720 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,240 DEBUG Processing 187/662 atomic regions from SNP 55868 to 56468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,348 DEBUG Processing 128/720 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,436 DEBUG Processing 188/662 atomic regions from SNP 56168 to 56768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,571 DEBUG Processing 129/720 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,634 DEBUG Processing 189/662 atomic regions from SNP 56468 to 57068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,789 DEBUG Processing 130/720 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,829 DEBUG Processing 190/662 atomic regions from SNP 56768 to 57368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,007 DEBUG Processing 131/720 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,027 DEBUG Processing 191/662 atomic regions from SNP 57068 to 57668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,230 DEBUG Processing 192/662 atomic regions from SNP 57368 to 57968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,230 DEBUG Processing 132/720 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,425 DEBUG Processing 193/662 atomic regions from SNP 57668 to 58268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,460 DEBUG Processing 133/720 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,619 DEBUG Processing 194/662 atomic regions from SNP 57968 to 58568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,679 DEBUG Processing 134/720 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,815 DEBUG Processing 195/662 atomic regions from SNP 58268 to 58868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,900 DEBUG Processing 135/720 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,018 DEBUG Processing 196/662 atomic regions from SNP 58568 to 59168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,113 DEBUG Processing 136/720 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,226 DEBUG Processing 197/662 atomic regions from SNP 58868 to 59468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,327 DEBUG Processing 137/720 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,447 DEBUG Processing 198/662 atomic regions from SNP 59168 to 59768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,543 DEBUG Processing 138/720 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,646 DEBUG Processing 199/662 atomic regions from SNP 59468 to 60068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,759 DEBUG Processing 139/720 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,845 DEBUG Processing 200/662 atomic regions from SNP 59768 to 60368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,983 DEBUG Processing 140/720 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,041 DEBUG Processing 201/662 atomic regions from SNP 60068 to 60668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,201 DEBUG Processing 141/720 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,249 DEBUG Processing 202/662 atomic regions from SNP 60368 to 60968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,419 DEBUG Processing 142/720 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,446 DEBUG Processing 203/662 atomic regions from SNP 60668 to 61268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,629 DEBUG Processing 143/720 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,643 DEBUG Processing 204/662 atomic regions from SNP 60968 to 61568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,837 DEBUG Processing 205/662 atomic regions from SNP 61268 to 61868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,843 DEBUG Processing 144/720 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,029 DEBUG Processing 206/662 atomic regions from SNP 61568 to 62168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,057 DEBUG Processing 145/720 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,251 DEBUG Processing 207/662 atomic regions from SNP 61868 to 62468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,268 DEBUG Processing 146/720 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,452 DEBUG Processing 208/662 atomic regions from SNP 62168 to 62768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,479 DEBUG Processing 147/720 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,674 DEBUG Processing 209/662 atomic regions from SNP 62468 to 63068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,693 DEBUG Processing 148/720 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,868 DEBUG Processing 210/662 atomic regions from SNP 62768 to 63368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,907 DEBUG Processing 149/720 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,064 DEBUG Processing 211/662 atomic regions from SNP 63068 to 63668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,124 DEBUG Processing 150/720 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,263 DEBUG Processing 212/662 atomic regions from SNP 63368 to 63968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,341 DEBUG Processing 151/720 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,464 DEBUG Processing 213/662 atomic regions from SNP 63668 to 64268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,558 DEBUG Processing 152/720 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,663 DEBUG Processing 214/662 atomic regions from SNP 63968 to 64568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,777 DEBUG Processing 153/720 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,864 DEBUG Processing 215/662 atomic regions from SNP 64268 to 64868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,993 DEBUG Processing 154/720 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,079 DEBUG Processing 216/662 atomic regions from SNP 64568 to 65168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,258 DEBUG Processing 155/720 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,380 DEBUG Processing 217/662 atomic regions from SNP 64868 to 65468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,478 DEBUG Processing 156/720 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,612 DEBUG Processing 218/662 atomic regions from SNP 65168 to 65768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,703 DEBUG Processing 157/720 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,838 DEBUG Processing 219/662 atomic regions from SNP 65468 to 66068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,919 DEBUG Processing 158/720 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,057 DEBUG Processing 220/662 atomic regions from SNP 65768 to 66368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,137 DEBUG Processing 159/720 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,281 DEBUG Processing 221/662 atomic regions from SNP 66068 to 66668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,353 DEBUG Processing 160/720 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,488 DEBUG Processing 222/662 atomic regions from SNP 66368 to 66968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,586 DEBUG Processing 161/720 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,683 DEBUG Processing 223/662 atomic regions from SNP 66668 to 67268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,827 DEBUG Processing 162/720 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,884 DEBUG Processing 224/662 atomic regions from SNP 66968 to 67568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,068 DEBUG Processing 163/720 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,085 DEBUG Processing 225/662 atomic regions from SNP 67268 to 67868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,283 DEBUG Processing 164/720 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,296 DEBUG Processing 226/662 atomic regions from SNP 67568 to 68168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,505 DEBUG Processing 227/662 atomic regions from SNP 67868 to 68468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,508 DEBUG Processing 165/720 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,705 DEBUG Processing 228/662 atomic regions from SNP 68168 to 68768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,735 DEBUG Processing 166/720 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,902 DEBUG Processing 229/662 atomic regions from SNP 68468 to 69068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,963 DEBUG Processing 167/720 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,097 DEBUG Processing 230/662 atomic regions from SNP 68768 to 69368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,188 DEBUG Processing 168/720 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,290 DEBUG Processing 231/662 atomic regions from SNP 69068 to 69668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,427 DEBUG Processing 169/720 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,488 DEBUG Processing 232/662 atomic regions from SNP 69368 to 69968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,653 DEBUG Processing 170/720 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,679 DEBUG Processing 233/662 atomic regions from SNP 69668 to 70268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,868 DEBUG Processing 171/720 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,871 DEBUG Processing 234/662 atomic regions from SNP 69968 to 70568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,061 DEBUG Processing 235/662 atomic regions from SNP 70268 to 70868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,074 DEBUG Processing 172/720 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,256 DEBUG Processing 236/662 atomic regions from SNP 70568 to 71168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,286 DEBUG Processing 173/720 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,454 DEBUG Processing 237/662 atomic regions from SNP 70868 to 71468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,503 DEBUG Processing 174/720 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,654 DEBUG Processing 238/662 atomic regions from SNP 71168 to 71768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,727 DEBUG Processing 175/720 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,870 DEBUG Processing 239/662 atomic regions from SNP 71468 to 72068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,950 DEBUG Processing 176/720 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,102 DEBUG Processing 240/662 atomic regions from SNP 71768 to 72368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,170 DEBUG Processing 177/720 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,327 DEBUG Processing 241/662 atomic regions from SNP 72068 to 72668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,381 DEBUG Processing 178/720 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,532 DEBUG Processing 242/662 atomic regions from SNP 72368 to 72968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,593 DEBUG Processing 179/720 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,719 DEBUG Processing 243/662 atomic regions from SNP 72668 to 73268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,801 DEBUG Processing 180/720 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,913 DEBUG Processing 244/662 atomic regions from SNP 72968 to 73568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,010 DEBUG Processing 181/720 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,107 DEBUG Processing 245/662 atomic regions from SNP 73268 to 73868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,227 DEBUG Processing 182/720 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,334 DEBUG Processing 246/662 atomic regions from SNP 73568 to 74168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,445 DEBUG Processing 183/720 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,564 DEBUG Processing 247/662 atomic regions from SNP 73868 to 74468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,661 DEBUG Processing 184/720 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,791 DEBUG Processing 248/662 atomic regions from SNP 74168 to 74768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,888 DEBUG Processing 185/720 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,991 DEBUG Processing 249/662 atomic regions from SNP 74468 to 75068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,129 DEBUG Processing 186/720 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,201 DEBUG Processing 250/662 atomic regions from SNP 74768 to 75368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,367 DEBUG Processing 187/720 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,423 DEBUG Processing 251/662 atomic regions from SNP 75068 to 75668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,609 DEBUG Processing 188/720 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,641 DEBUG Processing 252/662 atomic regions from SNP 75368 to 75968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,848 DEBUG Processing 189/720 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,862 DEBUG Processing 253/662 atomic regions from SNP 75668 to 76268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,088 DEBUG Processing 190/720 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,091 DEBUG Processing 254/662 atomic regions from SNP 75968 to 76568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,329 DEBUG Processing 191/720 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,334 DEBUG Processing 255/662 atomic regions from SNP 76268 to 76868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,557 DEBUG Processing 192/720 atomic regions from SNP 57491 to 58091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,572 DEBUG Processing 256/662 atomic regions from SNP 76568 to 77168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,783 DEBUG Processing 193/720 atomic regions from SNP 57791 to 58391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,812 DEBUG Processing 257/662 atomic regions from SNP 76868 to 77468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,010 DEBUG Processing 194/720 atomic regions from SNP 58091 to 58691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,048 DEBUG Processing 258/662 atomic regions from SNP 77168 to 77768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,232 DEBUG Processing 195/720 atomic regions from SNP 58391 to 58991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,270 DEBUG Processing 259/662 atomic regions from SNP 77468 to 78068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,453 DEBUG Processing 196/720 atomic regions from SNP 58691 to 59291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,499 DEBUG Processing 260/662 atomic regions from SNP 77768 to 78368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,672 DEBUG Processing 197/720 atomic regions from SNP 58991 to 59591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,720 DEBUG Processing 261/662 atomic regions from SNP 78068 to 78668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,893 DEBUG Processing 198/720 atomic regions from SNP 59291 to 59891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,930 DEBUG Processing 262/662 atomic regions from SNP 78368 to 78968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,137 DEBUG Processing 199/720 atomic regions from SNP 59591 to 60191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,170 DEBUG Processing 263/662 atomic regions from SNP 78668 to 79268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,375 DEBUG Processing 200/720 atomic regions from SNP 59891 to 60491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,415 DEBUG Processing 264/662 atomic regions from SNP 78968 to 79568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,598 DEBUG Processing 201/720 atomic regions from SNP 60191 to 60791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,655 DEBUG Processing 265/662 atomic regions from SNP 79268 to 79868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,833 DEBUG Processing 202/720 atomic regions from SNP 60491 to 61091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,882 DEBUG Processing 266/662 atomic regions from SNP 79568 to 80168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,074 DEBUG Processing 203/720 atomic regions from SNP 60791 to 61391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,096 DEBUG Processing 267/662 atomic regions from SNP 79868 to 80468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,167 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:54:52,169 DEBUG chr11: Signal quantile: 0.980. signal threshold: 13. Best RMSEA: 0.008 2025-01-31 09:54:52,306 DEBUG Processing 268/662 atomic regions from SNP 80168 to 80768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,316 DEBUG Processing 204/720 atomic regions from SNP 61091 to 61691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,508 DEBUG Processing 269/662 atomic regions from SNP 80468 to 81068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,551 DEBUG Processing 205/720 atomic regions from SNP 61391 to 61991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,720 DEBUG Processing 270/662 atomic regions from SNP 80768 to 81368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,790 DEBUG Processing 206/720 atomic regions from SNP 61691 to 62291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,958 DEBUG Processing 271/662 atomic regions from SNP 81068 to 81668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,036 DEBUG Processing 207/720 atomic regions from SNP 61991 to 62591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,176 DEBUG Processing 272/662 atomic regions from SNP 81368 to 81968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,279 DEBUG Processing 208/720 atomic regions from SNP 62291 to 62891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,389 DEBUG Processing 273/662 atomic regions from SNP 81668 to 82268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,512 DEBUG Processing 209/720 atomic regions from SNP 62591 to 63191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,591 DEBUG Processing 274/662 atomic regions from SNP 81968 to 82568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,742 DEBUG Processing 210/720 atomic regions from SNP 62891 to 63491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,809 DEBUG Processing 275/662 atomic regions from SNP 82268 to 82868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,967 DEBUG Processing 211/720 atomic regions from SNP 63191 to 63791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,021 DEBUG Processing 276/662 atomic regions from SNP 82568 to 83168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,198 DEBUG Processing 212/720 atomic regions from SNP 63491 to 64091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,252 DEBUG Processing 277/662 atomic regions from SNP 82868 to 83468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,429 DEBUG Processing 213/720 atomic regions from SNP 63791 to 64391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,484 DEBUG Processing 278/662 atomic regions from SNP 83168 to 83768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,553 DEBUG chr11 total SNP count: 211254 2025-01-31 09:54:54,554 DEBUG chr11 length: 122082543 2025-01-31 09:54:54,554 DEBUG ----------------------------------------- 2025-01-31 09:54:54,554 INFO Processing SNPs in chr11 2025-01-31 09:54:54,664 DEBUG Processing 214/720 atomic regions from SNP 64091 to 64691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,686 DEBUG Processing 279/662 atomic regions from SNP 83468 to 84068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,765 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211254)] 2025-01-31 09:54:54,881 DEBUG Processing 215/720 atomic regions from SNP 64391 to 64991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,889 DEBUG Processing 280/662 atomic regions from SNP 83768 to 84368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,910 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:55,088 DEBUG Processing 281/662 atomic regions from SNP 84068 to 84668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,107 DEBUG Processing 216/720 atomic regions from SNP 64691 to 65291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,287 DEBUG Processing 282/662 atomic regions from SNP 84368 to 84968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,350 DEBUG Processing 217/720 atomic regions from SNP 64991 to 65591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,484 DEBUG Processing 283/662 atomic regions from SNP 84668 to 85268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,594 DEBUG Processing 218/720 atomic regions from SNP 65291 to 65891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,685 DEBUG Processing 284/662 atomic regions from SNP 84968 to 85568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,824 DEBUG Processing 219/720 atomic regions from SNP 65591 to 66191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,885 DEBUG Processing 285/662 atomic regions from SNP 85268 to 85868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,052 DEBUG Processing 220/720 atomic regions from SNP 65891 to 66491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,085 DEBUG Processing 286/662 atomic regions from SNP 85568 to 86168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,274 DEBUG Processing 221/720 atomic regions from SNP 66191 to 66791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,286 DEBUG Processing 287/662 atomic regions from SNP 85868 to 86468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,500 DEBUG Processing 288/662 atomic regions from SNP 86168 to 86768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,502 DEBUG Processing 222/720 atomic regions from SNP 66491 to 67091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,721 DEBUG Processing 289/662 atomic regions from SNP 86468 to 87068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,723 DEBUG Processing 223/720 atomic regions from SNP 66791 to 67391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,938 DEBUG Processing 290/662 atomic regions from SNP 86768 to 87368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,946 DEBUG Processing 224/720 atomic regions from SNP 67091 to 67691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,146 DEBUG Processing 291/662 atomic regions from SNP 87068 to 87668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,175 DEBUG Processing 225/720 atomic regions from SNP 67391 to 67991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,375 DEBUG Processing 292/662 atomic regions from SNP 87368 to 87968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,402 DEBUG Processing 226/720 atomic regions from SNP 67691 to 68291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,576 DEBUG Processing 293/662 atomic regions from SNP 87668 to 88268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,626 DEBUG Processing 227/720 atomic regions from SNP 67991 to 68591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,782 DEBUG Processing 294/662 atomic regions from SNP 87968 to 88568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,851 DEBUG Processing 228/720 atomic regions from SNP 68291 to 68891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,985 DEBUG Processing 295/662 atomic regions from SNP 88268 to 88868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,073 DEBUG Processing 229/720 atomic regions from SNP 68591 to 69191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,188 DEBUG Processing 296/662 atomic regions from SNP 88568 to 89168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,298 DEBUG Processing 230/720 atomic regions from SNP 68891 to 69491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,398 DEBUG Processing 297/662 atomic regions from SNP 88868 to 89468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,524 DEBUG Processing 231/720 atomic regions from SNP 69191 to 69791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,615 DEBUG Processing 298/662 atomic regions from SNP 89168 to 89768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,761 DEBUG Processing 232/720 atomic regions from SNP 69491 to 70091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,840 DEBUG Processing 299/662 atomic regions from SNP 89468 to 90068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,024 DEBUG Processing 233/720 atomic regions from SNP 69791 to 70391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,068 DEBUG Processing 300/662 atomic regions from SNP 89768 to 90368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,279 DEBUG Processing 234/720 atomic regions from SNP 70091 to 70691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,289 DEBUG Processing 301/662 atomic regions from SNP 90068 to 90668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,485 DEBUG Processing 302/662 atomic regions from SNP 90368 to 90968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,513 DEBUG Processing 235/720 atomic regions from SNP 70391 to 70991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,690 DEBUG Processing 303/662 atomic regions from SNP 90668 to 91268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,745 DEBUG Processing 236/720 atomic regions from SNP 70691 to 71291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,888 DEBUG Processing 304/662 atomic regions from SNP 90968 to 91568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:59,972 DEBUG Processing 237/720 atomic regions from SNP 70991 to 71591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,089 DEBUG Processing 305/662 atomic regions from SNP 91268 to 91868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,221 DEBUG Processing 238/720 atomic regions from SNP 71291 to 71891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,288 DEBUG Processing 306/662 atomic regions from SNP 91568 to 92168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,478 DEBUG Processing 239/720 atomic regions from SNP 71591 to 72191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,522 DEBUG Processing 307/662 atomic regions from SNP 91868 to 92468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,741 DEBUG Processing 240/720 atomic regions from SNP 71891 to 72491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,750 DEBUG Processing 308/662 atomic regions from SNP 92168 to 92768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:00,976 DEBUG Processing 309/662 atomic regions from SNP 92468 to 93068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,001 DEBUG Processing 241/720 atomic regions from SNP 72191 to 72791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,203 DEBUG Processing 310/662 atomic regions from SNP 92768 to 93368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,257 DEBUG Processing 242/720 atomic regions from SNP 72491 to 73091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,415 DEBUG Processing 311/662 atomic regions from SNP 93068 to 93668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,504 DEBUG Processing 243/720 atomic regions from SNP 72791 to 73391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,621 DEBUG Processing 312/662 atomic regions from SNP 93368 to 93968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,744 DEBUG Processing 244/720 atomic regions from SNP 73091 to 73691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,828 DEBUG Processing 313/662 atomic regions from SNP 93668 to 94268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:01,972 DEBUG Processing 245/720 atomic regions from SNP 73391 to 73991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,029 DEBUG Processing 314/662 atomic regions from SNP 93968 to 94568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,194 DEBUG Processing 246/720 atomic regions from SNP 73691 to 74291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,241 DEBUG Processing 315/662 atomic regions from SNP 94268 to 94868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,413 DEBUG Processing 247/720 atomic regions from SNP 73991 to 74591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,452 DEBUG Processing 316/662 atomic regions from SNP 94568 to 95168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,641 DEBUG Processing 248/720 atomic regions from SNP 74291 to 74891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,652 DEBUG Processing 317/662 atomic regions from SNP 94868 to 95468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,850 DEBUG Processing 318/662 atomic regions from SNP 95168 to 95768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:02,889 DEBUG Processing 249/720 atomic regions from SNP 74591 to 75191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,059 DEBUG Processing 319/662 atomic regions from SNP 95468 to 96068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,146 DEBUG Processing 250/720 atomic regions from SNP 74891 to 75491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,265 DEBUG Processing 320/662 atomic regions from SNP 95768 to 96368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,391 DEBUG Processing 251/720 atomic regions from SNP 75191 to 75791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,473 DEBUG Processing 321/662 atomic regions from SNP 96068 to 96668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,630 DEBUG Processing 252/720 atomic regions from SNP 75491 to 76091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,697 DEBUG Processing 322/662 atomic regions from SNP 96368 to 96968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:03,858 DEBUG Processing 253/720 atomic regions from SNP 75791 to 76391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,925 DEBUG Processing 323/662 atomic regions from SNP 96668 to 97268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,090 DEBUG Processing 254/720 atomic regions from SNP 76091 to 76691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,153 DEBUG Processing 324/662 atomic regions from SNP 96968 to 97568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,315 DEBUG Processing 255/720 atomic regions from SNP 76391 to 76991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,355 DEBUG Processing 325/662 atomic regions from SNP 97268 to 97868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,542 DEBUG Processing 256/720 atomic regions from SNP 76691 to 77291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,578 DEBUG Processing 326/662 atomic regions from SNP 97568 to 98168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,762 DEBUG Processing 257/720 atomic regions from SNP 76991 to 77591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,799 DEBUG Processing 327/662 atomic regions from SNP 97868 to 98468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:04,984 DEBUG Processing 258/720 atomic regions from SNP 77291 to 77891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,010 DEBUG Processing 328/662 atomic regions from SNP 98168 to 98768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,215 DEBUG Processing 259/720 atomic regions from SNP 77591 to 78191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,220 DEBUG Processing 329/662 atomic regions from SNP 98468 to 99068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,422 DEBUG Processing 330/662 atomic regions from SNP 98768 to 99368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,432 DEBUG Processing 260/720 atomic regions from SNP 77891 to 78491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,621 DEBUG Processing 331/662 atomic regions from SNP 99068 to 99668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,650 DEBUG Processing 261/720 atomic regions from SNP 78191 to 78791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,819 DEBUG Processing 332/662 atomic regions from SNP 99368 to 99968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:05,871 DEBUG Processing 262/720 atomic regions from SNP 78491 to 79091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,015 DEBUG Processing 333/662 atomic regions from SNP 99668 to 100268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,093 DEBUG Processing 263/720 atomic regions from SNP 78791 to 79391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,229 DEBUG Processing 334/662 atomic regions from SNP 99968 to 100568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,317 DEBUG Processing 264/720 atomic regions from SNP 79091 to 79691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,440 DEBUG Processing 335/662 atomic regions from SNP 100268 to 100868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,539 DEBUG Processing 265/720 atomic regions from SNP 79391 to 79991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,650 DEBUG Processing 336/662 atomic regions from SNP 100568 to 101168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,759 DEBUG Processing 266/720 atomic regions from SNP 79691 to 80291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,856 DEBUG Processing 337/662 atomic regions from SNP 100868 to 101468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:06,977 DEBUG Processing 267/720 atomic regions from SNP 79991 to 80591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,071 DEBUG Processing 338/662 atomic regions from SNP 101168 to 101768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,199 DEBUG Processing 268/720 atomic regions from SNP 80291 to 80891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,281 DEBUG Processing 339/662 atomic regions from SNP 101468 to 102068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,418 DEBUG Processing 269/720 atomic regions from SNP 80591 to 81191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,494 DEBUG Processing 340/662 atomic regions from SNP 101768 to 102368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,630 DEBUG Processing 270/720 atomic regions from SNP 80891 to 81491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,700 DEBUG Processing 341/662 atomic regions from SNP 102068 to 102668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:07,845 DEBUG Processing 271/720 atomic regions from SNP 81191 to 81791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,913 DEBUG Processing 342/662 atomic regions from SNP 102368 to 102968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,069 DEBUG Processing 272/720 atomic regions from SNP 81491 to 82091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,130 DEBUG Processing 343/662 atomic regions from SNP 102668 to 103268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,286 DEBUG Processing 273/720 atomic regions from SNP 81791 to 82391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,339 DEBUG Processing 344/662 atomic regions from SNP 102968 to 103568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,508 DEBUG Processing 274/720 atomic regions from SNP 82091 to 82691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,571 DEBUG Processing 345/662 atomic regions from SNP 103268 to 103868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,730 DEBUG Processing 275/720 atomic regions from SNP 82391 to 82991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,786 DEBUG Processing 346/662 atomic regions from SNP 103568 to 104168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:08,947 DEBUG Processing 276/720 atomic regions from SNP 82691 to 83291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,997 DEBUG Processing 347/662 atomic regions from SNP 103868 to 104468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,164 DEBUG Processing 277/720 atomic regions from SNP 82991 to 83591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,226 DEBUG Processing 348/662 atomic regions from SNP 104168 to 104768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,380 DEBUG Processing 278/720 atomic regions from SNP 83291 to 83891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,432 DEBUG Processing 349/662 atomic regions from SNP 104468 to 105068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,613 DEBUG Processing 279/720 atomic regions from SNP 83591 to 84191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,653 DEBUG Processing 350/662 atomic regions from SNP 104768 to 105368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:09,862 DEBUG Processing 280/720 atomic regions from SNP 83891 to 84491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,883 DEBUG Processing 351/662 atomic regions from SNP 105068 to 105668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,106 DEBUG Processing 352/662 atomic regions from SNP 105368 to 105968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,110 DEBUG Processing 281/720 atomic regions from SNP 84191 to 84791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,340 DEBUG Processing 282/720 atomic regions from SNP 84491 to 85091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,348 DEBUG Processing 353/662 atomic regions from SNP 105668 to 106268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,571 DEBUG Processing 283/720 atomic regions from SNP 84791 to 85391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,609 DEBUG Processing 354/662 atomic regions from SNP 105968 to 106568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:10,721 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:55:10,801 DEBUG Processing 284/720 atomic regions from SNP 85091 to 85691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,835 DEBUG Processing 355/662 atomic regions from SNP 106268 to 106868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,025 DEBUG Processing 285/720 atomic regions from SNP 85391 to 85991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,047 DEBUG Processing 356/662 atomic regions from SNP 106568 to 107168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,249 DEBUG Processing 286/720 atomic regions from SNP 85691 to 86291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,256 DEBUG Processing 357/662 atomic regions from SNP 106868 to 107468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,482 DEBUG Processing 358/662 atomic regions from SNP 107168 to 107768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,489 DEBUG Processing 287/720 atomic regions from SNP 85991 to 86591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,713 DEBUG Processing 359/662 atomic regions from SNP 107468 to 108068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,729 DEBUG Processing 288/720 atomic regions from SNP 86291 to 86891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,968 DEBUG Processing 360/662 atomic regions from SNP 107768 to 108368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:11,994 DEBUG Processing 289/720 atomic regions from SNP 86591 to 87191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,257 DEBUG Processing 361/662 atomic regions from SNP 108068 to 108668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:12,267 DEBUG Processing 290/720 atomic regions from SNP 86891 to 87491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,473 DEBUG Processing 362/662 atomic regions from SNP 108368 to 108968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:12,493 DEBUG Processing 291/720 atomic regions from SNP 87191 to 87791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,742 DEBUG Processing 363/662 atomic regions from SNP 108668 to 109268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:12,771 DEBUG Processing 292/720 atomic regions from SNP 87491 to 88091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,044 DEBUG Processing 364/662 atomic regions from SNP 108968 to 109568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,061 DEBUG Processing 293/720 atomic regions from SNP 87791 to 88391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,343 DEBUG Processing 365/662 atomic regions from SNP 109268 to 109868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,374 DEBUG Processing 294/720 atomic regions from SNP 88091 to 88691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,672 DEBUG Processing 366/662 atomic regions from SNP 109568 to 110168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:13,703 DEBUG Processing 295/720 atomic regions from SNP 88391 to 88991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,991 DEBUG Processing 367/662 atomic regions from SNP 109868 to 110468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:14,024 DEBUG Processing 296/720 atomic regions from SNP 88691 to 89291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,326 DEBUG Processing 368/662 atomic regions from SNP 110168 to 110768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:14,347 DEBUG Processing 297/720 atomic regions from SNP 88991 to 89591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,670 DEBUG Processing 298/720 atomic regions from SNP 89291 to 89891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,675 DEBUG Processing 369/662 atomic regions from SNP 110468 to 111068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:14,962 DEBUG Processing 299/720 atomic regions from SNP 89591 to 90191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,985 DEBUG Processing 370/662 atomic regions from SNP 110768 to 111368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:15,260 DEBUG Processing 300/720 atomic regions from SNP 89891 to 90491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,262 DEBUG Processing 371/662 atomic regions from SNP 111068 to 111668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:15,562 DEBUG Processing 301/720 atomic regions from SNP 90191 to 90791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,571 DEBUG Processing 372/662 atomic regions from SNP 111368 to 111968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:15,881 DEBUG Processing 302/720 atomic regions from SNP 90491 to 91091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,883 DEBUG Processing 373/662 atomic regions from SNP 111668 to 112268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,213 DEBUG Processing 374/662 atomic regions from SNP 111968 to 112568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,235 DEBUG Processing 303/720 atomic regions from SNP 90791 to 91391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,532 DEBUG Processing 375/662 atomic regions from SNP 112268 to 112868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,578 DEBUG Processing 304/720 atomic regions from SNP 91091 to 91691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,830 DEBUG Processing 376/662 atomic regions from SNP 112568 to 113168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:16,885 DEBUG Processing 305/720 atomic regions from SNP 91391 to 91991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,165 DEBUG Processing 377/662 atomic regions from SNP 112868 to 113468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:17,203 DEBUG Processing 306/720 atomic regions from SNP 91691 to 92291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,507 DEBUG Processing 378/662 atomic regions from SNP 113168 to 113768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:17,519 DEBUG Processing 307/720 atomic regions from SNP 91991 to 92591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,832 DEBUG Processing 308/720 atomic regions from SNP 92291 to 92891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,837 DEBUG Processing 379/662 atomic regions from SNP 113468 to 114068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,091 DEBUG Processing 309/720 atomic regions from SNP 92591 to 93191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,098 DEBUG Processing 380/662 atomic regions from SNP 113768 to 114368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,366 DEBUG Processing 381/662 atomic regions from SNP 114068 to 114668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,367 DEBUG Processing 310/720 atomic regions from SNP 92891 to 93491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,680 DEBUG Processing 311/720 atomic regions from SNP 93191 to 93791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,683 DEBUG Processing 382/662 atomic regions from SNP 114368 to 114968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:18,986 DEBUG Processing 312/720 atomic regions from SNP 93491 to 94091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,994 DEBUG Processing 383/662 atomic regions from SNP 114668 to 115268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,296 DEBUG Processing 313/720 atomic regions from SNP 93791 to 94391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,347 DEBUG Processing 384/662 atomic regions from SNP 114968 to 115568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,615 DEBUG Processing 314/720 atomic regions from SNP 94091 to 94691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,717 DEBUG Processing 385/662 atomic regions from SNP 115268 to 115868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:19,955 DEBUG Processing 315/720 atomic regions from SNP 94391 to 94991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,088 DEBUG Processing 386/662 atomic regions from SNP 115568 to 116168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:20,290 DEBUG Processing 316/720 atomic regions from SNP 94691 to 95291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,447 DEBUG Processing 387/662 atomic regions from SNP 115868 to 116468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:20,619 DEBUG Processing 317/720 atomic regions from SNP 94991 to 95591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,747 DEBUG Segmenting atomic regions: 2025-01-31 09:55:20,807 DEBUG Processing 388/662 atomic regions from SNP 116168 to 116768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:20,839 DEBUG Processing 1/703 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,965 DEBUG Processing 318/720 atomic regions from SNP 95291 to 95891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,151 DEBUG Processing 389/662 atomic regions from SNP 116468 to 117068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,168 DEBUG Processing 2/703 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,300 DEBUG Processing 319/720 atomic regions from SNP 95591 to 96191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,504 DEBUG Processing 390/662 atomic regions from SNP 116768 to 117368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,527 DEBUG Processing 3/703 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,668 DEBUG Processing 320/720 atomic regions from SNP 95891 to 96491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,887 DEBUG Processing 391/662 atomic regions from SNP 117068 to 117668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:21,900 DEBUG Processing 4/703 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,054 DEBUG Processing 321/720 atomic regions from SNP 96191 to 96791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,250 DEBUG Processing 392/662 atomic regions from SNP 117368 to 117968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,255 DEBUG Processing 5/703 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,416 DEBUG Processing 322/720 atomic regions from SNP 96491 to 97091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,575 DEBUG Processing 393/662 atomic regions from SNP 117668 to 118268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,585 DEBUG Processing 6/703 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,780 DEBUG Processing 323/720 atomic regions from SNP 96791 to 97391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,901 DEBUG Processing 394/662 atomic regions from SNP 117968 to 118568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:22,912 DEBUG Processing 7/703 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,103 DEBUG Processing 324/720 atomic regions from SNP 97091 to 97691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,237 DEBUG Processing 395/662 atomic regions from SNP 118268 to 118868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:23,264 DEBUG Processing 8/703 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,445 DEBUG Processing 325/720 atomic regions from SNP 97391 to 97991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,560 DEBUG Processing 396/662 atomic regions from SNP 118568 to 119168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:23,577 DEBUG Processing 9/703 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,792 DEBUG Processing 326/720 atomic regions from SNP 97691 to 98291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,887 DEBUG Processing 397/662 atomic regions from SNP 118868 to 119468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:23,898 DEBUG Processing 10/703 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,139 DEBUG Processing 327/720 atomic regions from SNP 97991 to 98591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,222 DEBUG Processing 398/662 atomic regions from SNP 119168 to 119768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,238 DEBUG Processing 11/703 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,416 DEBUG Processing 328/720 atomic regions from SNP 98291 to 98891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,514 DEBUG Processing 399/662 atomic regions from SNP 119468 to 120068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,572 DEBUG Processing 12/703 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,719 DEBUG Processing 329/720 atomic regions from SNP 98591 to 99191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,828 DEBUG Processing 400/662 atomic regions from SNP 119768 to 120368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:24,898 DEBUG Processing 13/703 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,046 DEBUG Processing 330/720 atomic regions from SNP 98891 to 99491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,130 DEBUG Processing 401/662 atomic regions from SNP 120068 to 120668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,215 DEBUG Processing 14/703 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,360 DEBUG Processing 331/720 atomic regions from SNP 99191 to 99791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,436 DEBUG Processing 402/662 atomic regions from SNP 120368 to 120968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,518 DEBUG Processing 15/703 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,645 DEBUG Processing 332/720 atomic regions from SNP 99491 to 100091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,694 DEBUG Processing 403/662 atomic regions from SNP 120668 to 121268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:25,814 DEBUG Processing 16/703 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,937 DEBUG Processing 333/720 atomic regions from SNP 99791 to 100391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,977 DEBUG Processing 404/662 atomic regions from SNP 120968 to 121568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,064 DEBUG Processing 17/703 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,186 DEBUG Processing 405/662 atomic regions from SNP 121268 to 121868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,193 DEBUG Processing 334/720 atomic regions from SNP 100091 to 100691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,310 DEBUG Processing 18/703 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,408 DEBUG Processing 406/662 atomic regions from SNP 121568 to 122168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,438 DEBUG Processing 335/720 atomic regions from SNP 100391 to 100991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,530 DEBUG Processing 19/703 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,640 DEBUG Processing 407/662 atomic regions from SNP 121868 to 122468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,657 DEBUG Processing 336/720 atomic regions from SNP 100691 to 101291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,760 DEBUG Processing 20/703 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,866 DEBUG Processing 408/662 atomic regions from SNP 122168 to 122768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:26,876 DEBUG Processing 337/720 atomic regions from SNP 100991 to 101591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,997 DEBUG Processing 21/703 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,091 DEBUG Processing 409/662 atomic regions from SNP 122468 to 123068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,114 DEBUG Processing 338/720 atomic regions from SNP 101291 to 101891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,238 DEBUG Processing 22/703 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,296 DEBUG Processing 410/662 atomic regions from SNP 122768 to 123368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,337 DEBUG Processing 339/720 atomic regions from SNP 101591 to 102191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,457 DEBUG Processing 23/703 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,499 DEBUG Processing 411/662 atomic regions from SNP 123068 to 123668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,555 DEBUG Processing 340/720 atomic regions from SNP 101891 to 102491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,664 DEBUG Processing 24/703 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,698 DEBUG Processing 412/662 atomic regions from SNP 123368 to 123968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:27,772 DEBUG Processing 341/720 atomic regions from SNP 102191 to 102791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,870 DEBUG Processing 25/703 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,900 DEBUG Processing 413/662 atomic regions from SNP 123668 to 124268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,008 DEBUG Processing 342/720 atomic regions from SNP 102491 to 103091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,082 DEBUG Processing 26/703 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,103 DEBUG Processing 414/662 atomic regions from SNP 123968 to 124568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,236 DEBUG Processing 343/720 atomic regions from SNP 102791 to 103391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,290 DEBUG Processing 27/703 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,302 DEBUG Processing 415/662 atomic regions from SNP 124268 to 124868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,461 DEBUG Processing 344/720 atomic regions from SNP 103091 to 103691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,504 DEBUG Processing 28/703 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,509 DEBUG Processing 416/662 atomic regions from SNP 124568 to 125168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,709 DEBUG Processing 345/720 atomic regions from SNP 103391 to 103991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,720 DEBUG Processing 29/703 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,720 DEBUG Processing 417/662 atomic regions from SNP 124868 to 125468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,931 DEBUG Processing 418/662 atomic regions from SNP 125168 to 125768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:28,945 DEBUG Processing 30/703 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,957 DEBUG Processing 346/720 atomic regions from SNP 103691 to 104291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,142 DEBUG Processing 419/662 atomic regions from SNP 125468 to 126068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,165 DEBUG Processing 31/703 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,181 DEBUG Processing 347/720 atomic regions from SNP 103991 to 104591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,353 DEBUG Processing 420/662 atomic regions from SNP 125768 to 126368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,385 DEBUG Processing 32/703 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,419 DEBUG Processing 348/720 atomic regions from SNP 104291 to 104891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,560 DEBUG Processing 421/662 atomic regions from SNP 126068 to 126668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,597 DEBUG Processing 33/703 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,666 DEBUG Processing 349/720 atomic regions from SNP 104591 to 105191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,765 DEBUG Processing 422/662 atomic regions from SNP 126368 to 126968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:29,812 DEBUG Processing 34/703 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,901 DEBUG Processing 350/720 atomic regions from SNP 104891 to 105491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,963 DEBUG Processing 423/662 atomic regions from SNP 126668 to 127268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,023 DEBUG Processing 35/703 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,145 DEBUG Processing 351/720 atomic regions from SNP 105191 to 105791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,163 DEBUG Processing 424/662 atomic regions from SNP 126968 to 127568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,230 DEBUG Processing 36/703 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,360 DEBUG Processing 425/662 atomic regions from SNP 127268 to 127868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,398 DEBUG Processing 352/720 atomic regions from SNP 105491 to 106091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,466 DEBUG Processing 37/703 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,581 DEBUG Processing 426/662 atomic regions from SNP 127568 to 128168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,644 DEBUG Processing 353/720 atomic regions from SNP 105791 to 106391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,683 DEBUG Processing 38/703 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,828 DEBUG Processing 427/662 atomic regions from SNP 127868 to 128468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:30,936 DEBUG Processing 354/720 atomic regions from SNP 106091 to 106691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,936 DEBUG Processing 39/703 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,124 DEBUG Processing 428/662 atomic regions from SNP 128168 to 128768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,244 DEBUG Processing 40/703 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,270 DEBUG Processing 355/720 atomic regions from SNP 106391 to 106991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,450 DEBUG Processing 429/662 atomic regions from SNP 128468 to 129068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,570 DEBUG Processing 41/703 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,603 DEBUG Processing 356/720 atomic regions from SNP 106691 to 107291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,760 DEBUG Processing 430/662 atomic regions from SNP 128768 to 129368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:31,891 DEBUG Processing 42/703 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,929 DEBUG Processing 357/720 atomic regions from SNP 106991 to 107591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,006 DEBUG Processing 431/662 atomic regions from SNP 129068 to 129668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,114 DEBUG Processing 43/703 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,160 DEBUG Processing 358/720 atomic regions from SNP 107291 to 107891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,240 DEBUG Processing 432/662 atomic regions from SNP 129368 to 129968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,325 DEBUG Processing 44/703 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,346 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:55:32,348 DEBUG chr13: Signal quantile: 0.986. signal threshold: 12. Best RMSEA: 0.010 2025-01-31 09:55:32,385 DEBUG Processing 359/720 atomic regions from SNP 107591 to 108191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,448 DEBUG Processing 433/662 atomic regions from SNP 129668 to 130268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,538 DEBUG Processing 45/703 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,632 DEBUG Processing 360/720 atomic regions from SNP 107891 to 108491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,658 DEBUG Processing 434/662 atomic regions from SNP 129968 to 130568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,752 DEBUG Processing 46/703 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,865 DEBUG Processing 435/662 atomic regions from SNP 130268 to 130868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:32,877 DEBUG Processing 361/720 atomic regions from SNP 108191 to 108791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,967 DEBUG Processing 47/703 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,073 DEBUG Processing 436/662 atomic regions from SNP 130568 to 131168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,125 DEBUG Processing 362/720 atomic regions from SNP 108491 to 109091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,185 DEBUG Processing 48/703 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,276 DEBUG Processing 437/662 atomic regions from SNP 130868 to 131468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,379 DEBUG Processing 363/720 atomic regions from SNP 108791 to 109391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,399 DEBUG Processing 49/703 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,481 DEBUG Processing 438/662 atomic regions from SNP 131168 to 131768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,653 DEBUG Processing 364/720 atomic regions from SNP 109091 to 109691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,657 DEBUG Processing 50/703 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,728 DEBUG Processing 439/662 atomic regions from SNP 131468 to 132068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:33,893 DEBUG Processing 51/703 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,899 DEBUG Processing 365/720 atomic regions from SNP 109391 to 109991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,935 DEBUG Processing 440/662 atomic regions from SNP 131768 to 132368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,103 DEBUG Processing 52/703 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,140 DEBUG Processing 366/720 atomic regions from SNP 109691 to 110291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,141 DEBUG Processing 441/662 atomic regions from SNP 132068 to 132668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,311 DEBUG Processing 53/703 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,347 DEBUG Processing 442/662 atomic regions from SNP 132368 to 132968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,390 DEBUG Processing 367/720 atomic regions from SNP 109991 to 110591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,518 DEBUG Processing 54/703 atomic regions from SNP 15953 to 16553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,557 DEBUG Processing 443/662 atomic regions from SNP 132668 to 133268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,624 DEBUG chr13 total SNP count: 201949 2025-01-31 09:55:34,624 DEBUG chr13 length: 120421639 2025-01-31 09:55:34,624 DEBUG ----------------------------------------- 2025-01-31 09:55:34,624 INFO Processing SNPs in chr13 2025-01-31 09:55:34,642 DEBUG Processing 368/720 atomic regions from SNP 110291 to 110891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,729 DEBUG Processing 55/703 atomic regions from SNP 16253 to 16853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,770 DEBUG Processing 444/662 atomic regions from SNP 132968 to 133568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:34,825 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 201949)] 2025-01-31 09:55:34,888 DEBUG Processing 369/720 atomic regions from SNP 110591 to 111191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,939 DEBUG Processing 56/703 atomic regions from SNP 16553 to 17153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,964 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:34,975 DEBUG Processing 445/662 atomic regions from SNP 133268 to 133868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,134 DEBUG Processing 370/720 atomic regions from SNP 110891 to 111491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,155 DEBUG Processing 57/703 atomic regions from SNP 16853 to 17453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,180 DEBUG Processing 446/662 atomic regions from SNP 133568 to 134168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,371 DEBUG Processing 371/720 atomic regions from SNP 111191 to 111791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,372 DEBUG Processing 58/703 atomic regions from SNP 17153 to 17753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,404 DEBUG Processing 447/662 atomic regions from SNP 133868 to 134468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,590 DEBUG Processing 59/703 atomic regions from SNP 17453 to 18053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,611 DEBUG Processing 448/662 atomic regions from SNP 134168 to 134768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,620 DEBUG Processing 372/720 atomic regions from SNP 111491 to 112091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,805 DEBUG Processing 60/703 atomic regions from SNP 17753 to 18353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,817 DEBUG Processing 449/662 atomic regions from SNP 134468 to 135068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:35,856 DEBUG Processing 373/720 atomic regions from SNP 111791 to 112391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,020 DEBUG Processing 450/662 atomic regions from SNP 134768 to 135368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,021 DEBUG Processing 61/703 atomic regions from SNP 18053 to 18653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,097 DEBUG Processing 374/720 atomic regions from SNP 112091 to 112691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,225 DEBUG Processing 451/662 atomic regions from SNP 135068 to 135668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,234 DEBUG Processing 62/703 atomic regions from SNP 18353 to 18953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,344 DEBUG Processing 375/720 atomic regions from SNP 112391 to 112991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,419 DEBUG Processing 452/662 atomic regions from SNP 135368 to 135968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,448 DEBUG Processing 63/703 atomic regions from SNP 18653 to 19253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,590 DEBUG Processing 376/720 atomic regions from SNP 112691 to 113291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,622 DEBUG Processing 453/662 atomic regions from SNP 135668 to 136268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,669 DEBUG Processing 64/703 atomic regions from SNP 18953 to 19553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,822 DEBUG Processing 377/720 atomic regions from SNP 112991 to 113591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,836 DEBUG Processing 454/662 atomic regions from SNP 135968 to 136568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:36,894 DEBUG Processing 65/703 atomic regions from SNP 19253 to 19853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,049 DEBUG Processing 455/662 atomic regions from SNP 136268 to 136868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,065 DEBUG Processing 378/720 atomic regions from SNP 113291 to 113891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,124 DEBUG Processing 66/703 atomic regions from SNP 19553 to 20153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,266 DEBUG Processing 456/662 atomic regions from SNP 136568 to 137168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,322 DEBUG Processing 379/720 atomic regions from SNP 113591 to 114191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,382 DEBUG Processing 67/703 atomic regions from SNP 19853 to 20453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,500 DEBUG Processing 457/662 atomic regions from SNP 136868 to 137468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,569 DEBUG Processing 380/720 atomic regions from SNP 113891 to 114491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,623 DEBUG Processing 68/703 atomic regions from SNP 20153 to 20753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,748 DEBUG Processing 458/662 atomic regions from SNP 137168 to 137768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:37,850 DEBUG Processing 381/720 atomic regions from SNP 114191 to 114791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,871 DEBUG Processing 69/703 atomic regions from SNP 20453 to 21053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,005 DEBUG Processing 459/662 atomic regions from SNP 137468 to 138068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,120 DEBUG Processing 382/720 atomic regions from SNP 114491 to 115091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,131 DEBUG Processing 70/703 atomic regions from SNP 20753 to 21353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,292 DEBUG Processing 460/662 atomic regions from SNP 137768 to 138368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,377 DEBUG Processing 383/720 atomic regions from SNP 114791 to 115391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,395 DEBUG Processing 71/703 atomic regions from SNP 21053 to 21653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,592 DEBUG Processing 461/662 atomic regions from SNP 138068 to 138668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,658 DEBUG Processing 384/720 atomic regions from SNP 115091 to 115691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,669 DEBUG Processing 72/703 atomic regions from SNP 21353 to 21953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,914 DEBUG Processing 462/662 atomic regions from SNP 138368 to 138968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:38,963 DEBUG Processing 385/720 atomic regions from SNP 115391 to 115991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,973 DEBUG Processing 73/703 atomic regions from SNP 21653 to 22253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,255 DEBUG Processing 463/662 atomic regions from SNP 138668 to 139268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,283 DEBUG Processing 74/703 atomic regions from SNP 21953 to 22553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,299 DEBUG Processing 386/720 atomic regions from SNP 115691 to 116291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,579 DEBUG Processing 464/662 atomic regions from SNP 138968 to 139568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,586 DEBUG Processing 75/703 atomic regions from SNP 22253 to 22853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,607 DEBUG Processing 387/720 atomic regions from SNP 115991 to 116591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,893 DEBUG Processing 76/703 atomic regions from SNP 22553 to 23153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,897 DEBUG Processing 465/662 atomic regions from SNP 139268 to 139868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:39,914 DEBUG Processing 388/720 atomic regions from SNP 116291 to 116891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,215 DEBUG Processing 77/703 atomic regions from SNP 22853 to 23453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,232 DEBUG Processing 466/662 atomic regions from SNP 139568 to 140168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,243 DEBUG Processing 389/720 atomic regions from SNP 116591 to 117191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,516 DEBUG Processing 78/703 atomic regions from SNP 23153 to 23753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,548 DEBUG Processing 390/720 atomic regions from SNP 116891 to 117491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,550 DEBUG Processing 467/662 atomic regions from SNP 139868 to 140468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:40,815 DEBUG Processing 79/703 atomic regions from SNP 23453 to 24053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,865 DEBUG Processing 391/720 atomic regions from SNP 117191 to 117791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,875 DEBUG Processing 468/662 atomic regions from SNP 140168 to 140768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,104 DEBUG Processing 80/703 atomic regions from SNP 23753 to 24353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,171 DEBUG Processing 392/720 atomic regions from SNP 117491 to 118091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,188 DEBUG Processing 469/662 atomic regions from SNP 140468 to 141068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,392 DEBUG Processing 81/703 atomic regions from SNP 24053 to 24653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,482 DEBUG Processing 393/720 atomic regions from SNP 117791 to 118391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,516 DEBUG Processing 470/662 atomic regions from SNP 140768 to 141368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,685 DEBUG Processing 82/703 atomic regions from SNP 24353 to 24953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,792 DEBUG Processing 394/720 atomic regions from SNP 118091 to 118691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,830 DEBUG Processing 471/662 atomic regions from SNP 141068 to 141668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:41,987 DEBUG Processing 83/703 atomic regions from SNP 24653 to 25253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,082 DEBUG Processing 395/720 atomic regions from SNP 118391 to 118991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,094 DEBUG Processing 472/662 atomic regions from SNP 141368 to 141968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,208 DEBUG Processing 84/703 atomic regions from SNP 24953 to 25553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,328 DEBUG Processing 396/720 atomic regions from SNP 118691 to 119291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,332 DEBUG Processing 473/662 atomic regions from SNP 141668 to 142268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,421 DEBUG Processing 85/703 atomic regions from SNP 25253 to 25853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,542 DEBUG Processing 474/662 atomic regions from SNP 141968 to 142568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,550 DEBUG Processing 397/720 atomic regions from SNP 118991 to 119591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,633 DEBUG Processing 86/703 atomic regions from SNP 25553 to 26153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,753 DEBUG Processing 475/662 atomic regions from SNP 142268 to 142868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,772 DEBUG Processing 398/720 atomic regions from SNP 119291 to 119891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,850 DEBUG Processing 87/703 atomic regions from SNP 25853 to 26453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,965 DEBUG Processing 476/662 atomic regions from SNP 142568 to 143168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:42,994 DEBUG Processing 399/720 atomic regions from SNP 119591 to 120191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,070 DEBUG Processing 88/703 atomic regions from SNP 26153 to 26753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,195 DEBUG Processing 477/662 atomic regions from SNP 142868 to 143468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,221 DEBUG Processing 400/720 atomic regions from SNP 119891 to 120491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,315 DEBUG Processing 89/703 atomic regions from SNP 26453 to 27053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,405 DEBUG Processing 478/662 atomic regions from SNP 143168 to 143768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,441 DEBUG Processing 401/720 atomic regions from SNP 120191 to 120791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,541 DEBUG Processing 90/703 atomic regions from SNP 26753 to 27353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,620 DEBUG Processing 479/662 atomic regions from SNP 143468 to 144068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,667 DEBUG Processing 402/720 atomic regions from SNP 120491 to 121091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,757 DEBUG Processing 91/703 atomic regions from SNP 27053 to 27653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,823 DEBUG Processing 480/662 atomic regions from SNP 143768 to 144368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:43,895 DEBUG Processing 403/720 atomic regions from SNP 120791 to 121391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,968 DEBUG Processing 92/703 atomic regions from SNP 27353 to 27953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,035 DEBUG Processing 481/662 atomic regions from SNP 144068 to 144668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,142 DEBUG Processing 404/720 atomic regions from SNP 121091 to 121691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,190 DEBUG Processing 93/703 atomic regions from SNP 27653 to 28253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,254 DEBUG Processing 482/662 atomic regions from SNP 144368 to 144968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,403 DEBUG Processing 405/720 atomic regions from SNP 121391 to 121991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,433 DEBUG Processing 94/703 atomic regions from SNP 27953 to 28553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,490 DEBUG Processing 483/662 atomic regions from SNP 144668 to 145268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,651 DEBUG Processing 406/720 atomic regions from SNP 121691 to 122291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,680 DEBUG Processing 95/703 atomic regions from SNP 28253 to 28853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,768 DEBUG Processing 484/662 atomic regions from SNP 144968 to 145568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:44,873 DEBUG Processing 407/720 atomic regions from SNP 121991 to 122591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,911 DEBUG Processing 96/703 atomic regions from SNP 28553 to 29153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,036 DEBUG Processing 485/662 atomic regions from SNP 145268 to 145868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,111 DEBUG Processing 408/720 atomic regions from SNP 122291 to 122891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,133 DEBUG Processing 97/703 atomic regions from SNP 28853 to 29453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,294 DEBUG Processing 486/662 atomic regions from SNP 145568 to 146168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,380 DEBUG Processing 409/720 atomic regions from SNP 122591 to 123191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,392 DEBUG Processing 98/703 atomic regions from SNP 29153 to 29753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,543 DEBUG Processing 487/662 atomic regions from SNP 145868 to 146468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,663 DEBUG Processing 410/720 atomic regions from SNP 122891 to 123491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,666 DEBUG Processing 99/703 atomic regions from SNP 29453 to 30053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,766 DEBUG Processing 488/662 atomic regions from SNP 146168 to 146768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:45,935 DEBUG Processing 411/720 atomic regions from SNP 123191 to 123791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,940 DEBUG Processing 100/703 atomic regions from SNP 29753 to 30353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,014 DEBUG Processing 489/662 atomic regions from SNP 146468 to 147068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,220 DEBUG Processing 412/720 atomic regions from SNP 123491 to 124091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,222 DEBUG Processing 101/703 atomic regions from SNP 30053 to 30653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,306 DEBUG Processing 490/662 atomic regions from SNP 146768 to 147368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,462 DEBUG Processing 413/720 atomic regions from SNP 123791 to 124391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,472 DEBUG Processing 102/703 atomic regions from SNP 30353 to 30953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,519 DEBUG Processing 491/662 atomic regions from SNP 147068 to 147668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,686 DEBUG Processing 103/703 atomic regions from SNP 30653 to 31253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,702 DEBUG Processing 414/720 atomic regions from SNP 124091 to 124691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,718 DEBUG Processing 492/662 atomic regions from SNP 147368 to 147968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,898 DEBUG Processing 104/703 atomic regions from SNP 30953 to 31553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,917 DEBUG Processing 493/662 atomic regions from SNP 147668 to 148268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:46,946 DEBUG Processing 415/720 atomic regions from SNP 124391 to 124991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,105 DEBUG Processing 105/703 atomic regions from SNP 31253 to 31853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,114 DEBUG Processing 494/662 atomic regions from SNP 147968 to 148568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,195 DEBUG Processing 416/720 atomic regions from SNP 124691 to 125291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,311 DEBUG Processing 106/703 atomic regions from SNP 31553 to 32153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,313 DEBUG Processing 495/662 atomic regions from SNP 148268 to 148868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,425 DEBUG Processing 417/720 atomic regions from SNP 124991 to 125591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,518 DEBUG Processing 496/662 atomic regions from SNP 148568 to 149168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,519 DEBUG Processing 107/703 atomic regions from SNP 31853 to 32453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,657 DEBUG Processing 418/720 atomic regions from SNP 125291 to 125891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,723 DEBUG Processing 497/662 atomic regions from SNP 148868 to 149468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,726 DEBUG Processing 108/703 atomic regions from SNP 32153 to 32753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,881 DEBUG Processing 419/720 atomic regions from SNP 125591 to 126191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,932 DEBUG Processing 498/662 atomic regions from SNP 149168 to 149768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:47,935 DEBUG Processing 109/703 atomic regions from SNP 32453 to 33053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,106 DEBUG Processing 420/720 atomic regions from SNP 125891 to 126491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,147 DEBUG Processing 499/662 atomic regions from SNP 149468 to 150068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,151 DEBUG Processing 110/703 atomic regions from SNP 32753 to 33353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,332 DEBUG Processing 421/720 atomic regions from SNP 126191 to 126791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,357 DEBUG Processing 500/662 atomic regions from SNP 149768 to 150368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,370 DEBUG Processing 111/703 atomic regions from SNP 33053 to 33653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,554 DEBUG Processing 422/720 atomic regions from SNP 126491 to 127091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,568 DEBUG Processing 501/662 atomic regions from SNP 150068 to 150668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,590 DEBUG Processing 112/703 atomic regions from SNP 33353 to 33953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,768 DEBUG Processing 423/720 atomic regions from SNP 126791 to 127391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,777 DEBUG Processing 502/662 atomic regions from SNP 150368 to 150968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:48,824 DEBUG Processing 113/703 atomic regions from SNP 33653 to 34253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,985 DEBUG Processing 424/720 atomic regions from SNP 127091 to 127691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,989 DEBUG Processing 503/662 atomic regions from SNP 150668 to 151268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,057 DEBUG Processing 114/703 atomic regions from SNP 33953 to 34553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,196 DEBUG Processing 504/662 atomic regions from SNP 150968 to 151568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,202 DEBUG Processing 425/720 atomic regions from SNP 127391 to 127991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,264 DEBUG Processing 115/703 atomic regions from SNP 34253 to 34853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,407 DEBUG Processing 505/662 atomic regions from SNP 151268 to 151868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,417 DEBUG Processing 426/720 atomic regions from SNP 127691 to 128291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,471 DEBUG Processing 116/703 atomic regions from SNP 34553 to 35153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,613 DEBUG Processing 506/662 atomic regions from SNP 151568 to 152168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,634 DEBUG Processing 427/720 atomic regions from SNP 127991 to 128591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,679 DEBUG Processing 117/703 atomic regions from SNP 34853 to 35453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,820 DEBUG Processing 507/662 atomic regions from SNP 151868 to 152468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:49,857 DEBUG Processing 428/720 atomic regions from SNP 128291 to 128891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,896 DEBUG Processing 118/703 atomic regions from SNP 35153 to 35753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,020 DEBUG Processing 508/662 atomic regions from SNP 152168 to 152768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,078 DEBUG Processing 429/720 atomic regions from SNP 128591 to 129191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,106 DEBUG Processing 119/703 atomic regions from SNP 35453 to 36053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,218 DEBUG Processing 509/662 atomic regions from SNP 152468 to 153068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,278 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:55:50,298 DEBUG Processing 430/720 atomic regions from SNP 128891 to 129491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,319 DEBUG Processing 120/703 atomic regions from SNP 35753 to 36353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,424 DEBUG Processing 510/662 atomic regions from SNP 152768 to 153368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,531 DEBUG Processing 431/720 atomic regions from SNP 129191 to 129791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,534 DEBUG Processing 121/703 atomic regions from SNP 36053 to 36653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,630 DEBUG Processing 511/662 atomic regions from SNP 153068 to 153668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,750 DEBUG Processing 122/703 atomic regions from SNP 36353 to 36953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,779 DEBUG Processing 432/720 atomic regions from SNP 129491 to 130091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,835 DEBUG Processing 512/662 atomic regions from SNP 153368 to 153968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:50,961 DEBUG Processing 123/703 atomic regions from SNP 36653 to 37253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,028 DEBUG Processing 433/720 atomic regions from SNP 129791 to 130391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,038 DEBUG Processing 513/662 atomic regions from SNP 153668 to 154268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,172 DEBUG Processing 124/703 atomic regions from SNP 36953 to 37553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,239 DEBUG Processing 514/662 atomic regions from SNP 153968 to 154568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,257 DEBUG Processing 434/720 atomic regions from SNP 130091 to 130691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,384 DEBUG Processing 125/703 atomic regions from SNP 37253 to 37853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,440 DEBUG Processing 515/662 atomic regions from SNP 154268 to 154868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,471 DEBUG Processing 435/720 atomic regions from SNP 130391 to 130991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,594 DEBUG Processing 126/703 atomic regions from SNP 37553 to 38153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,652 DEBUG Processing 516/662 atomic regions from SNP 154568 to 155168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,688 DEBUG Processing 436/720 atomic regions from SNP 130691 to 131291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,805 DEBUG Processing 127/703 atomic regions from SNP 37853 to 38453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,856 DEBUG Processing 517/662 atomic regions from SNP 154868 to 155468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:51,905 DEBUG Processing 437/720 atomic regions from SNP 130991 to 131591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,009 DEBUG Processing 128/703 atomic regions from SNP 38153 to 38753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,053 DEBUG Processing 518/662 atomic regions from SNP 155168 to 155768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,125 DEBUG Processing 438/720 atomic regions from SNP 131291 to 131891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,212 DEBUG Processing 129/703 atomic regions from SNP 38453 to 39053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,253 DEBUG Processing 519/662 atomic regions from SNP 155468 to 156068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,342 DEBUG Processing 439/720 atomic regions from SNP 131591 to 132191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,416 DEBUG Processing 130/703 atomic regions from SNP 38753 to 39353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,453 DEBUG Processing 520/662 atomic regions from SNP 155768 to 156368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,561 DEBUG Processing 440/720 atomic regions from SNP 131891 to 132491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,625 DEBUG Processing 131/703 atomic regions from SNP 39053 to 39653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,652 DEBUG Processing 521/662 atomic regions from SNP 156068 to 156668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,777 DEBUG Processing 441/720 atomic regions from SNP 132191 to 132791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,835 DEBUG Processing 132/703 atomic regions from SNP 39353 to 39953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,853 DEBUG Processing 522/662 atomic regions from SNP 156368 to 156968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:52,992 DEBUG Processing 442/720 atomic regions from SNP 132491 to 133091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,044 DEBUG Processing 133/703 atomic regions from SNP 39653 to 40253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,053 DEBUG Processing 523/662 atomic regions from SNP 156668 to 157268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,208 DEBUG Processing 443/720 atomic regions from SNP 132791 to 133391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,253 DEBUG Processing 524/662 atomic regions from SNP 156968 to 157568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,253 DEBUG Processing 134/703 atomic regions from SNP 39953 to 40553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,423 DEBUG Processing 444/720 atomic regions from SNP 133091 to 133691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,455 DEBUG Processing 525/662 atomic regions from SNP 157268 to 157868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,463 DEBUG Processing 135/703 atomic regions from SNP 40253 to 40853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,639 DEBUG Processing 445/720 atomic regions from SNP 133391 to 133991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,658 DEBUG Processing 526/662 atomic regions from SNP 157568 to 158168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,677 DEBUG Processing 136/703 atomic regions from SNP 40553 to 41153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,862 DEBUG Processing 446/720 atomic regions from SNP 133691 to 134291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:53,862 DEBUG Processing 527/662 atomic regions from SNP 157868 to 158468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:53,894 DEBUG Processing 137/703 atomic regions from SNP 40853 to 41453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,069 DEBUG Processing 528/662 atomic regions from SNP 158168 to 158768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,094 DEBUG Processing 447/720 atomic regions from SNP 133991 to 134591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,110 DEBUG Processing 138/703 atomic regions from SNP 41153 to 41753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,277 DEBUG Processing 529/662 atomic regions from SNP 158468 to 159068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,348 DEBUG Processing 448/720 atomic regions from SNP 134291 to 134891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,349 DEBUG Processing 139/703 atomic regions from SNP 41453 to 42053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,543 DEBUG Processing 530/662 atomic regions from SNP 158768 to 159368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,650 DEBUG Processing 140/703 atomic regions from SNP 41753 to 42353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,672 DEBUG Processing 449/720 atomic regions from SNP 134591 to 135191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:54,779 DEBUG Processing 531/662 atomic regions from SNP 159068 to 159668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:54,886 DEBUG Processing 141/703 atomic regions from SNP 42053 to 42653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,918 DEBUG Processing 450/720 atomic regions from SNP 134891 to 135491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,041 DEBUG Processing 532/662 atomic regions from SNP 159368 to 159968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,149 DEBUG Processing 142/703 atomic regions from SNP 42353 to 42953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,192 DEBUG Processing 451/720 atomic regions from SNP 135191 to 135791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,246 DEBUG Processing 533/662 atomic regions from SNP 159668 to 160268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,386 DEBUG Processing 143/703 atomic regions from SNP 42653 to 43253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,466 DEBUG Processing 452/720 atomic regions from SNP 135491 to 136091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,529 DEBUG Processing 534/662 atomic regions from SNP 159968 to 160568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,601 DEBUG Processing 144/703 atomic regions from SNP 42953 to 43553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,684 DEBUG Processing 453/720 atomic regions from SNP 135791 to 136391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:55,801 DEBUG Processing 535/662 atomic regions from SNP 160268 to 160868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:55,846 DEBUG Processing 145/703 atomic regions from SNP 43253 to 43853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,920 DEBUG Processing 454/720 atomic regions from SNP 136091 to 136691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,027 DEBUG Processing 536/662 atomic regions from SNP 160568 to 161168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,074 DEBUG Processing 146/703 atomic regions from SNP 43553 to 44153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,180 DEBUG Processing 455/720 atomic regions from SNP 136391 to 136991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,253 DEBUG Processing 537/662 atomic regions from SNP 160868 to 161468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,295 DEBUG Processing 147/703 atomic regions from SNP 43853 to 44453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,393 DEBUG Processing 456/720 atomic regions from SNP 136691 to 137291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,463 DEBUG Processing 538/662 atomic regions from SNP 161168 to 161768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,507 DEBUG Processing 148/703 atomic regions from SNP 44153 to 44753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,608 DEBUG Processing 457/720 atomic regions from SNP 136991 to 137591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,678 DEBUG Processing 539/662 atomic regions from SNP 161468 to 162068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,717 DEBUG Processing 149/703 atomic regions from SNP 44453 to 45053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,823 DEBUG Processing 458/720 atomic regions from SNP 137291 to 137891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:56,903 DEBUG Processing 540/662 atomic regions from SNP 161768 to 162368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:56,927 DEBUG Processing 150/703 atomic regions from SNP 44753 to 45353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,034 DEBUG Processing 459/720 atomic regions from SNP 137591 to 138191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,103 DEBUG Processing 541/662 atomic regions from SNP 162068 to 162668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,150 DEBUG Processing 151/703 atomic regions from SNP 45053 to 45653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,249 DEBUG Processing 460/720 atomic regions from SNP 137891 to 138491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,306 DEBUG Processing 542/662 atomic regions from SNP 162368 to 162968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,384 DEBUG Processing 152/703 atomic regions from SNP 45353 to 45953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,469 DEBUG Processing 461/720 atomic regions from SNP 138191 to 138791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,508 DEBUG Processing 543/662 atomic regions from SNP 162668 to 163268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,597 DEBUG Processing 153/703 atomic regions from SNP 45653 to 46253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,681 DEBUG Processing 462/720 atomic regions from SNP 138491 to 139091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,707 DEBUG Processing 544/662 atomic regions from SNP 162968 to 163568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:57,805 DEBUG Processing 154/703 atomic regions from SNP 45953 to 46553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,894 DEBUG Processing 463/720 atomic regions from SNP 138791 to 139391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:57,904 DEBUG Processing 545/662 atomic regions from SNP 163268 to 163868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,018 DEBUG Processing 155/703 atomic regions from SNP 46253 to 46853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,103 DEBUG Processing 546/662 atomic regions from SNP 163568 to 164168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,107 DEBUG Processing 464/720 atomic regions from SNP 139091 to 139691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,227 DEBUG Processing 156/703 atomic regions from SNP 46553 to 47153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,300 DEBUG Processing 547/662 atomic regions from SNP 163868 to 164468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,319 DEBUG Processing 465/720 atomic regions from SNP 139391 to 139991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,439 DEBUG Processing 157/703 atomic regions from SNP 46853 to 47453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,495 DEBUG Processing 548/662 atomic regions from SNP 164168 to 164768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,532 DEBUG Processing 466/720 atomic regions from SNP 139691 to 140291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,648 DEBUG Processing 158/703 atomic regions from SNP 47153 to 47753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,689 DEBUG Processing 549/662 atomic regions from SNP 164468 to 165068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,739 DEBUG Processing 467/720 atomic regions from SNP 139991 to 140591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:58,855 DEBUG Processing 159/703 atomic regions from SNP 47453 to 48053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,887 DEBUG Processing 550/662 atomic regions from SNP 164768 to 165368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:58,951 DEBUG Processing 468/720 atomic regions from SNP 140291 to 140891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,063 DEBUG Processing 160/703 atomic regions from SNP 47753 to 48353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,092 DEBUG Processing 551/662 atomic regions from SNP 165068 to 165668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,166 DEBUG Processing 469/720 atomic regions from SNP 140591 to 141191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,271 DEBUG Processing 161/703 atomic regions from SNP 48053 to 48653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,288 DEBUG Processing 552/662 atomic regions from SNP 165368 to 165968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,381 DEBUG Processing 470/720 atomic regions from SNP 140891 to 141491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,477 DEBUG Processing 162/703 atomic regions from SNP 48353 to 48953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,485 DEBUG Processing 553/662 atomic regions from SNP 165668 to 166268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,593 DEBUG Processing 471/720 atomic regions from SNP 141191 to 141791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,623 DEBUG Segmenting atomic regions: 2025-01-31 09:55:59,684 DEBUG Processing 554/662 atomic regions from SNP 165968 to 166568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,705 DEBUG Processing 163/703 atomic regions from SNP 48653 to 49253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,713 DEBUG Processing 1/672 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,812 DEBUG Processing 472/720 atomic regions from SNP 141491 to 142091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:59,884 DEBUG Processing 555/662 atomic regions from SNP 166268 to 166868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:55:59,921 DEBUG Processing 2/672 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,944 DEBUG Processing 164/703 atomic regions from SNP 48953 to 49553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,031 DEBUG Processing 473/720 atomic regions from SNP 141791 to 142391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,080 DEBUG Processing 556/662 atomic regions from SNP 166568 to 167168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,129 DEBUG Processing 3/672 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,166 DEBUG Processing 165/703 atomic regions from SNP 49253 to 49853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,252 DEBUG Processing 474/720 atomic regions from SNP 142091 to 142691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,280 DEBUG Processing 557/662 atomic regions from SNP 166868 to 167468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,331 DEBUG Processing 4/672 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,396 DEBUG Processing 166/703 atomic regions from SNP 49553 to 50153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,469 DEBUG Processing 475/720 atomic regions from SNP 142391 to 142991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,477 DEBUG Processing 558/662 atomic regions from SNP 167168 to 167768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,533 DEBUG Processing 5/672 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,639 DEBUG Processing 167/703 atomic regions from SNP 49853 to 50453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,676 DEBUG Processing 559/662 atomic regions from SNP 167468 to 168068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,690 DEBUG Processing 476/720 atomic regions from SNP 142691 to 143291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,734 DEBUG Processing 6/672 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,854 DEBUG Processing 168/703 atomic regions from SNP 50153 to 50753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,875 DEBUG Processing 560/662 atomic regions from SNP 167768 to 168368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:00,910 DEBUG Processing 477/720 atomic regions from SNP 142991 to 143591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:00,938 DEBUG Processing 7/672 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,063 DEBUG Processing 169/703 atomic regions from SNP 50453 to 51053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,076 DEBUG Processing 561/662 atomic regions from SNP 168068 to 168668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,126 DEBUG Processing 478/720 atomic regions from SNP 143291 to 143891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,143 DEBUG Processing 8/672 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,270 DEBUG Processing 170/703 atomic regions from SNP 50753 to 51353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,279 DEBUG Processing 562/662 atomic regions from SNP 168368 to 168968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,340 DEBUG Processing 479/720 atomic regions from SNP 143591 to 144191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,348 DEBUG Processing 9/672 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,477 DEBUG Processing 171/703 atomic regions from SNP 51053 to 51653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,482 DEBUG Processing 563/662 atomic regions from SNP 168668 to 169268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,558 DEBUG Processing 10/672 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,558 DEBUG Processing 480/720 atomic regions from SNP 143891 to 144491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,687 DEBUG Processing 564/662 atomic regions from SNP 168968 to 169568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,687 DEBUG Processing 172/703 atomic regions from SNP 51353 to 51953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,776 DEBUG Processing 11/672 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,779 DEBUG Processing 481/720 atomic regions from SNP 144191 to 144791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:01,893 DEBUG Processing 565/662 atomic regions from SNP 169268 to 169868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:01,901 DEBUG Processing 173/703 atomic regions from SNP 51653 to 52253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,986 DEBUG Processing 12/672 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,999 DEBUG Processing 482/720 atomic regions from SNP 144491 to 145091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,101 DEBUG Processing 566/662 atomic regions from SNP 169568 to 170168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,115 DEBUG Processing 174/703 atomic regions from SNP 51953 to 52553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,196 DEBUG Processing 13/672 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,217 DEBUG Processing 483/720 atomic regions from SNP 144791 to 145391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,304 DEBUG Processing 567/662 atomic regions from SNP 169868 to 170468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,329 DEBUG Processing 175/703 atomic regions from SNP 52253 to 52853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,407 DEBUG Processing 14/672 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,437 DEBUG Processing 484/720 atomic regions from SNP 145091 to 145691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,504 DEBUG Processing 568/662 atomic regions from SNP 170168 to 170768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,534 DEBUG Processing 176/703 atomic regions from SNP 52553 to 53153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,614 DEBUG Processing 15/672 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,659 DEBUG Processing 485/720 atomic regions from SNP 145391 to 145991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,703 DEBUG Processing 569/662 atomic regions from SNP 170468 to 171068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,737 DEBUG Processing 177/703 atomic regions from SNP 52853 to 53453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,820 DEBUG Processing 16/672 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,888 DEBUG Processing 486/720 atomic regions from SNP 145691 to 146291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:02,900 DEBUG Processing 570/662 atomic regions from SNP 170768 to 171368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:02,943 DEBUG Processing 178/703 atomic regions from SNP 53153 to 53753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,020 DEBUG Processing 17/672 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,098 DEBUG Processing 571/662 atomic regions from SNP 171068 to 171668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,105 DEBUG Processing 487/720 atomic regions from SNP 145991 to 146591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,152 DEBUG Processing 179/703 atomic regions from SNP 53453 to 54053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,226 DEBUG Processing 18/672 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,300 DEBUG Processing 572/662 atomic regions from SNP 171368 to 171968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,324 DEBUG Processing 488/720 atomic regions from SNP 146291 to 146891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,363 DEBUG Processing 180/703 atomic regions from SNP 53753 to 54353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,431 DEBUG Processing 19/672 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,502 DEBUG Processing 573/662 atomic regions from SNP 171668 to 172268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,543 DEBUG Processing 489/720 atomic regions from SNP 146591 to 147191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,578 DEBUG Processing 181/703 atomic regions from SNP 54053 to 54653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,645 DEBUG Processing 20/672 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,714 DEBUG Processing 574/662 atomic regions from SNP 171968 to 172568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,764 DEBUG Processing 490/720 atomic regions from SNP 146891 to 147491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:03,795 DEBUG Processing 182/703 atomic regions from SNP 54353 to 54953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,848 DEBUG Processing 21/672 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,907 DEBUG Processing 575/662 atomic regions from SNP 172268 to 172868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:03,980 DEBUG Processing 491/720 atomic regions from SNP 147191 to 147791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,004 DEBUG Processing 183/703 atomic regions from SNP 54653 to 55253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,051 DEBUG Processing 22/672 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,103 DEBUG Processing 576/662 atomic regions from SNP 172568 to 173168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:04,195 DEBUG Processing 492/720 atomic regions from SNP 147491 to 148091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,214 DEBUG Processing 184/703 atomic regions from SNP 54953 to 55553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,258 DEBUG Processing 23/672 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,301 DEBUG Processing 577/662 atomic regions from SNP 172868 to 173468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:04,409 DEBUG Processing 493/720 atomic regions from SNP 147791 to 148391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,423 DEBUG Processing 185/703 atomic regions from SNP 55253 to 55853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,434 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:56:04,436 DEBUG chr12: Signal quantile: 0.990. signal threshold: 12. Best RMSEA: 0.011 2025-01-31 09:56:04,483 DEBUG Processing 24/672 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,515 DEBUG Processing 578/662 atomic regions from SNP 173168 to 173768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:04,622 DEBUG Processing 494/720 atomic regions from SNP 148091 to 148691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,631 DEBUG Processing 186/703 atomic regions from SNP 55553 to 56153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,693 DEBUG Processing 25/672 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,719 DEBUG Processing 579/662 atomic regions from SNP 173468 to 174068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:04,837 DEBUG Processing 495/720 atomic regions from SNP 148391 to 148991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:04,839 DEBUG Processing 187/703 atomic regions from SNP 55853 to 56453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,901 DEBUG Processing 26/672 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,922 DEBUG Processing 580/662 atomic regions from SNP 173768 to 174368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,069 DEBUG Processing 188/703 atomic regions from SNP 56153 to 56753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,076 DEBUG Processing 496/720 atomic regions from SNP 148691 to 149291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,134 DEBUG Processing 27/672 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,155 DEBUG Processing 581/662 atomic regions from SNP 174068 to 174668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,277 DEBUG Processing 189/703 atomic regions from SNP 56453 to 57053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,299 DEBUG Processing 497/720 atomic regions from SNP 148991 to 149591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,342 DEBUG Processing 28/672 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,362 DEBUG Processing 582/662 atomic regions from SNP 174368 to 174968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,490 DEBUG Processing 190/703 atomic regions from SNP 56753 to 57353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,525 DEBUG Processing 498/720 atomic regions from SNP 149291 to 149891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,557 DEBUG Processing 29/672 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,564 DEBUG Processing 583/662 atomic regions from SNP 174668 to 175268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,754 DEBUG Processing 191/703 atomic regions from SNP 57053 to 57653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,779 DEBUG Processing 499/720 atomic regions from SNP 149591 to 150191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:05,785 DEBUG Processing 30/672 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,792 DEBUG Processing 584/662 atomic regions from SNP 174968 to 175568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:05,984 DEBUG Processing 192/703 atomic regions from SNP 57353 to 57953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,014 DEBUG Processing 31/672 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,017 DEBUG Processing 585/662 atomic regions from SNP 175268 to 175868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,025 DEBUG Processing 500/720 atomic regions from SNP 149891 to 150491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,203 DEBUG Processing 193/703 atomic regions from SNP 57653 to 58253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,217 DEBUG Processing 586/662 atomic regions from SNP 175568 to 176168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,226 DEBUG Processing 32/672 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,247 DEBUG Processing 501/720 atomic regions from SNP 150191 to 150791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,416 DEBUG Processing 194/703 atomic regions from SNP 57953 to 58553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,417 DEBUG Processing 587/662 atomic regions from SNP 175868 to 176468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,430 DEBUG Processing 33/672 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,463 DEBUG Processing 502/720 atomic regions from SNP 150491 to 151091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,566 DEBUG chr12 total SNP count: 198288 2025-01-31 09:56:06,567 DEBUG chr12 length: 120129022 2025-01-31 09:56:06,567 DEBUG ----------------------------------------- 2025-01-31 09:56:06,567 INFO Processing SNPs in chr12 2025-01-31 09:56:06,613 DEBUG Processing 588/662 atomic regions from SNP 176168 to 176768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,627 DEBUG Processing 195/703 atomic regions from SNP 58253 to 58853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,637 DEBUG Processing 34/672 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,683 DEBUG Processing 503/720 atomic regions from SNP 150791 to 151391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,767 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 198288)] 2025-01-31 09:56:06,805 DEBUG Processing 589/662 atomic regions from SNP 176468 to 177068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:06,836 DEBUG Processing 196/703 atomic regions from SNP 58553 to 59153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,841 DEBUG Processing 35/672 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,902 DEBUG Processing 504/720 atomic regions from SNP 151091 to 151691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:06,905 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:06,999 DEBUG Processing 590/662 atomic regions from SNP 176768 to 177368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,041 DEBUG Processing 36/672 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,043 DEBUG Processing 197/703 atomic regions from SNP 58853 to 59453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,117 DEBUG Processing 505/720 atomic regions from SNP 151391 to 151991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,192 DEBUG Processing 591/662 atomic regions from SNP 177068 to 177668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,243 DEBUG Processing 37/672 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,256 DEBUG Processing 198/703 atomic regions from SNP 59153 to 59753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,339 DEBUG Processing 506/720 atomic regions from SNP 151691 to 152291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,396 DEBUG Processing 592/662 atomic regions from SNP 177368 to 177968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,440 DEBUG Processing 38/672 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,463 DEBUG Processing 199/703 atomic regions from SNP 59453 to 60053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,556 DEBUG Processing 507/720 atomic regions from SNP 151991 to 152591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,595 DEBUG Processing 593/662 atomic regions from SNP 177668 to 178268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,638 DEBUG Processing 39/672 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,667 DEBUG Processing 200/703 atomic regions from SNP 59753 to 60353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,767 DEBUG Processing 508/720 atomic regions from SNP 152291 to 152891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,794 DEBUG Processing 594/662 atomic regions from SNP 177968 to 178568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:07,838 DEBUG Processing 40/672 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,873 DEBUG Processing 201/703 atomic regions from SNP 60053 to 60653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,994 DEBUG Processing 509/720 atomic regions from SNP 152591 to 153191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:07,994 DEBUG Processing 595/662 atomic regions from SNP 178268 to 178868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,042 DEBUG Processing 41/672 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,086 DEBUG Processing 202/703 atomic regions from SNP 60353 to 60953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,196 DEBUG Processing 596/662 atomic regions from SNP 178568 to 179168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,215 DEBUG Processing 510/720 atomic regions from SNP 152891 to 153491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,246 DEBUG Processing 42/672 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,295 DEBUG Processing 203/703 atomic regions from SNP 60653 to 61253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,391 DEBUG Processing 597/662 atomic regions from SNP 178868 to 179468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,434 DEBUG Processing 511/720 atomic regions from SNP 153191 to 153791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,453 DEBUG Processing 43/672 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,509 DEBUG Processing 204/703 atomic regions from SNP 60953 to 61553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,583 DEBUG Processing 598/662 atomic regions from SNP 179168 to 179768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,650 DEBUG Processing 512/720 atomic regions from SNP 153491 to 154091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,659 DEBUG Processing 44/672 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,723 DEBUG Processing 205/703 atomic regions from SNP 61253 to 61853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,777 DEBUG Processing 599/662 atomic regions from SNP 179468 to 180068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:08,866 DEBUG Processing 45/672 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,869 DEBUG Processing 513/720 atomic regions from SNP 153791 to 154391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:08,940 DEBUG Processing 206/703 atomic regions from SNP 61553 to 62153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,971 DEBUG Processing 600/662 atomic regions from SNP 179768 to 180368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,070 DEBUG Processing 46/672 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,086 DEBUG Processing 514/720 atomic regions from SNP 154091 to 154691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,153 DEBUG Processing 207/703 atomic regions from SNP 61853 to 62453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,165 DEBUG Processing 601/662 atomic regions from SNP 180068 to 180668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,280 DEBUG Processing 47/672 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,308 DEBUG Processing 515/720 atomic regions from SNP 154391 to 154991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,360 DEBUG Processing 602/662 atomic regions from SNP 180368 to 180968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,371 DEBUG Processing 208/703 atomic regions from SNP 62153 to 62753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,487 DEBUG Processing 48/672 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,551 DEBUG Processing 516/720 atomic regions from SNP 154691 to 155291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,554 DEBUG Processing 603/662 atomic regions from SNP 180668 to 181268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,584 DEBUG Processing 209/703 atomic regions from SNP 62453 to 63053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,687 DEBUG Processing 49/672 atomic regions from SNP 14448 to 15048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,749 DEBUG Processing 604/662 atomic regions from SNP 180968 to 181568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,768 DEBUG Processing 517/720 atomic regions from SNP 154991 to 155591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:09,798 DEBUG Processing 210/703 atomic regions from SNP 62753 to 63353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,889 DEBUG Processing 50/672 atomic regions from SNP 14748 to 15348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,948 DEBUG Processing 605/662 atomic regions from SNP 181268 to 181868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:09,986 DEBUG Processing 518/720 atomic regions from SNP 155291 to 155891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,016 DEBUG Processing 211/703 atomic regions from SNP 63053 to 63653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,091 DEBUG Processing 51/672 atomic regions from SNP 15048 to 15648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,142 DEBUG Processing 606/662 atomic regions from SNP 181568 to 182168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,201 DEBUG Processing 519/720 atomic regions from SNP 155591 to 156191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,237 DEBUG Processing 212/703 atomic regions from SNP 63353 to 63953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,298 DEBUG Processing 52/672 atomic regions from SNP 15348 to 15948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,336 DEBUG Processing 607/662 atomic regions from SNP 181868 to 182468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,426 DEBUG Processing 520/720 atomic regions from SNP 155891 to 156491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,460 DEBUG Processing 213/703 atomic regions from SNP 63653 to 64253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,508 DEBUG Processing 53/672 atomic regions from SNP 15648 to 16248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,531 DEBUG Processing 608/662 atomic regions from SNP 182168 to 182768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,644 DEBUG Processing 521/720 atomic regions from SNP 156191 to 156791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,679 DEBUG Processing 214/703 atomic regions from SNP 63953 to 64553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,720 DEBUG Processing 54/672 atomic regions from SNP 15948 to 16548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,726 DEBUG Processing 609/662 atomic regions from SNP 182468 to 183068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,867 DEBUG Processing 522/720 atomic regions from SNP 156491 to 157091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:10,900 DEBUG Processing 215/703 atomic regions from SNP 64253 to 64853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,924 DEBUG Processing 610/662 atomic regions from SNP 182768 to 183368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:10,929 DEBUG Processing 55/672 atomic regions from SNP 16248 to 16848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,083 DEBUG Processing 523/720 atomic regions from SNP 156791 to 157391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,113 DEBUG Processing 216/703 atomic regions from SNP 64553 to 65153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,116 DEBUG Processing 611/662 atomic regions from SNP 183068 to 183668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,138 DEBUG Processing 56/672 atomic regions from SNP 16548 to 17148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,299 DEBUG Processing 524/720 atomic regions from SNP 157091 to 157691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,310 DEBUG Processing 612/662 atomic regions from SNP 183368 to 183968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,326 DEBUG Processing 217/703 atomic regions from SNP 64853 to 65453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,347 DEBUG Processing 57/672 atomic regions from SNP 16848 to 17448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,509 DEBUG Processing 613/662 atomic regions from SNP 183668 to 184268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,519 DEBUG Processing 525/720 atomic regions from SNP 157391 to 157991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,546 DEBUG Processing 218/703 atomic regions from SNP 65153 to 65753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,555 DEBUG Processing 58/672 atomic regions from SNP 17148 to 17748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,708 DEBUG Processing 614/662 atomic regions from SNP 183968 to 184568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,743 DEBUG Processing 526/720 atomic regions from SNP 157691 to 158291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,763 DEBUG Processing 59/672 atomic regions from SNP 17448 to 18048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,768 DEBUG Processing 219/703 atomic regions from SNP 65453 to 66053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,904 DEBUG Processing 615/662 atomic regions from SNP 184268 to 184868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:11,964 DEBUG Processing 527/720 atomic regions from SNP 157991 to 158591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:11,978 DEBUG Processing 60/672 atomic regions from SNP 17748 to 18348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,990 DEBUG Processing 220/703 atomic regions from SNP 65753 to 66353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,098 DEBUG Processing 616/662 atomic regions from SNP 184568 to 185168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,184 DEBUG Processing 528/720 atomic regions from SNP 158291 to 158891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,207 DEBUG Processing 61/672 atomic regions from SNP 18048 to 18648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,213 DEBUG Processing 221/703 atomic regions from SNP 66053 to 66653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,287 DEBUG Processing 617/662 atomic regions from SNP 184868 to 185468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,400 DEBUG Processing 529/720 atomic regions from SNP 158591 to 159191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,407 DEBUG Processing 62/672 atomic regions from SNP 18348 to 18948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,431 DEBUG Processing 222/703 atomic regions from SNP 66353 to 66953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,479 DEBUG Processing 618/662 atomic regions from SNP 185168 to 185768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,613 DEBUG Processing 63/672 atomic regions from SNP 18648 to 19248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,619 DEBUG Processing 530/720 atomic regions from SNP 158891 to 159491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,650 DEBUG Processing 223/703 atomic regions from SNP 66653 to 67253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,672 DEBUG Processing 619/662 atomic regions from SNP 185468 to 186068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,817 DEBUG Processing 64/672 atomic regions from SNP 18948 to 19548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,839 DEBUG Processing 531/720 atomic regions from SNP 159191 to 159791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:12,866 DEBUG Processing 620/662 atomic regions from SNP 185768 to 186368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:12,867 DEBUG Processing 224/703 atomic regions from SNP 66953 to 67553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,021 DEBUG Processing 65/672 atomic regions from SNP 19248 to 19848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,056 DEBUG Processing 532/720 atomic regions from SNP 159491 to 160091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,060 DEBUG Processing 621/662 atomic regions from SNP 186068 to 186668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,079 DEBUG Processing 225/703 atomic regions from SNP 67253 to 67853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,228 DEBUG Processing 66/672 atomic regions from SNP 19548 to 20148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,254 DEBUG Processing 622/662 atomic regions from SNP 186368 to 186968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,277 DEBUG Processing 533/720 atomic regions from SNP 159791 to 160391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,287 DEBUG Processing 226/703 atomic regions from SNP 67553 to 68153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,436 DEBUG Processing 67/672 atomic regions from SNP 19848 to 20448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,447 DEBUG Processing 623/662 atomic regions from SNP 186668 to 187268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,493 DEBUG Processing 534/720 atomic regions from SNP 160091 to 160691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,496 DEBUG Processing 227/703 atomic regions from SNP 67853 to 68453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,635 DEBUG Processing 68/672 atomic regions from SNP 20148 to 20748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,641 DEBUG Processing 624/662 atomic regions from SNP 186968 to 187568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,708 DEBUG Processing 228/703 atomic regions from SNP 68153 to 68753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,713 DEBUG Processing 535/720 atomic regions from SNP 160391 to 160991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:13,835 DEBUG Processing 69/672 atomic regions from SNP 20448 to 21048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,835 DEBUG Processing 625/662 atomic regions from SNP 187268 to 187868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:13,922 DEBUG Processing 229/703 atomic regions from SNP 68453 to 69053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,932 DEBUG Processing 536/720 atomic regions from SNP 160691 to 161291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,030 DEBUG Processing 626/662 atomic regions from SNP 187568 to 188168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,032 DEBUG Processing 70/672 atomic regions from SNP 20748 to 21348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,132 DEBUG Processing 230/703 atomic regions from SNP 68753 to 69353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,148 DEBUG Processing 537/720 atomic regions from SNP 160991 to 161591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,224 DEBUG Processing 627/662 atomic regions from SNP 187868 to 188468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,234 DEBUG Processing 71/672 atomic regions from SNP 21048 to 21648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,342 DEBUG Processing 231/703 atomic regions from SNP 69053 to 69653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,363 DEBUG Processing 538/720 atomic regions from SNP 161291 to 161891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,417 DEBUG Processing 628/662 atomic regions from SNP 188168 to 188768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,436 DEBUG Processing 72/672 atomic regions from SNP 21348 to 21948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,549 DEBUG Processing 232/703 atomic regions from SNP 69353 to 69953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,581 DEBUG Processing 539/720 atomic regions from SNP 161591 to 162191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,620 DEBUG Processing 629/662 atomic regions from SNP 188468 to 189068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,637 DEBUG Processing 73/672 atomic regions from SNP 21648 to 22248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,760 DEBUG Processing 233/703 atomic regions from SNP 69653 to 70253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,824 DEBUG Processing 540/720 atomic regions from SNP 161891 to 162491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:14,827 DEBUG Processing 630/662 atomic regions from SNP 188768 to 189368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:14,841 DEBUG Processing 74/672 atomic regions from SNP 21948 to 22548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,971 DEBUG Processing 234/703 atomic regions from SNP 69953 to 70553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,022 DEBUG Processing 631/662 atomic regions from SNP 189068 to 189668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,044 DEBUG Processing 75/672 atomic regions from SNP 22248 to 22848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,057 DEBUG Processing 541/720 atomic regions from SNP 162191 to 162791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,185 DEBUG Processing 235/703 atomic regions from SNP 70253 to 70853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,217 DEBUG Processing 632/662 atomic regions from SNP 189368 to 189968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,244 DEBUG Processing 76/672 atomic regions from SNP 22548 to 23148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,275 DEBUG Processing 542/720 atomic regions from SNP 162491 to 163091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,394 DEBUG Processing 236/703 atomic regions from SNP 70553 to 71153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,409 DEBUG Processing 633/662 atomic regions from SNP 189668 to 190268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,442 DEBUG Processing 77/672 atomic regions from SNP 22848 to 23448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,486 DEBUG Processing 543/720 atomic regions from SNP 162791 to 163391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,604 DEBUG Processing 634/662 atomic regions from SNP 189968 to 190568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,611 DEBUG Processing 237/703 atomic regions from SNP 70853 to 71453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,644 DEBUG Processing 78/672 atomic regions from SNP 23148 to 23748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,701 DEBUG Processing 544/720 atomic regions from SNP 163091 to 163691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,797 DEBUG Processing 635/662 atomic regions from SNP 190268 to 190868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:15,828 DEBUG Processing 238/703 atomic regions from SNP 71153 to 71753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,847 DEBUG Processing 79/672 atomic regions from SNP 23448 to 24048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,912 DEBUG Processing 545/720 atomic regions from SNP 163391 to 163991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:15,991 DEBUG Processing 636/662 atomic regions from SNP 190568 to 191168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,036 DEBUG Processing 239/703 atomic regions from SNP 71453 to 72053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,055 DEBUG Processing 80/672 atomic regions from SNP 23748 to 24348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,149 DEBUG Processing 546/720 atomic regions from SNP 163691 to 164291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,185 DEBUG Processing 637/662 atomic regions from SNP 190868 to 191468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,253 DEBUG Processing 240/703 atomic regions from SNP 71753 to 72353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,257 DEBUG Processing 81/672 atomic regions from SNP 24048 to 24648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,373 DEBUG Processing 638/662 atomic regions from SNP 191168 to 191768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,378 DEBUG Processing 547/720 atomic regions from SNP 163991 to 164591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,459 DEBUG Processing 82/672 atomic regions from SNP 24348 to 24948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,462 DEBUG Processing 241/703 atomic regions from SNP 72053 to 72653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,569 DEBUG Processing 639/662 atomic regions from SNP 191468 to 192068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,586 DEBUG Processing 548/720 atomic regions from SNP 164291 to 164891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,656 DEBUG Processing 83/672 atomic regions from SNP 24648 to 25248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,670 DEBUG Processing 242/703 atomic regions from SNP 72353 to 72953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,760 DEBUG Processing 640/662 atomic regions from SNP 191768 to 192368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:16,793 DEBUG Processing 549/720 atomic regions from SNP 164591 to 165191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:16,848 DEBUG Processing 84/672 atomic regions from SNP 24948 to 25548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,872 DEBUG Processing 243/703 atomic regions from SNP 72653 to 73253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,955 DEBUG Processing 641/662 atomic regions from SNP 192068 to 192668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,022 DEBUG Processing 550/720 atomic regions from SNP 164891 to 165491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,042 DEBUG Processing 85/672 atomic regions from SNP 25248 to 25848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,072 DEBUG Processing 244/703 atomic regions from SNP 72953 to 73553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,153 DEBUG Processing 642/662 atomic regions from SNP 192368 to 192968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,237 DEBUG Processing 86/672 atomic regions from SNP 25548 to 26148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,250 DEBUG Processing 551/720 atomic regions from SNP 165191 to 165791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,273 DEBUG Processing 245/703 atomic regions from SNP 73253 to 73853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,354 DEBUG Processing 643/662 atomic regions from SNP 192668 to 193268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,431 DEBUG Processing 87/672 atomic regions from SNP 25848 to 26448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,475 DEBUG Processing 552/720 atomic regions from SNP 165491 to 166091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,479 DEBUG Processing 246/703 atomic regions from SNP 73553 to 74153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,576 DEBUG Processing 644/662 atomic regions from SNP 192968 to 193568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,626 DEBUG Processing 88/672 atomic regions from SNP 26148 to 26748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,694 DEBUG Processing 247/703 atomic regions from SNP 73853 to 74453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,696 DEBUG Processing 553/720 atomic regions from SNP 165791 to 166391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,797 DEBUG Processing 645/662 atomic regions from SNP 193268 to 193868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:17,817 DEBUG Processing 89/672 atomic regions from SNP 26448 to 27048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,907 DEBUG Processing 248/703 atomic regions from SNP 74153 to 74753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,932 DEBUG Processing 554/720 atomic regions from SNP 166091 to 166691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:17,987 DEBUG Processing 646/662 atomic regions from SNP 193568 to 194168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,007 DEBUG Processing 90/672 atomic regions from SNP 26748 to 27348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,110 DEBUG Processing 249/703 atomic regions from SNP 74453 to 75053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,148 DEBUG Processing 555/720 atomic regions from SNP 166391 to 166991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,197 DEBUG Processing 91/672 atomic regions from SNP 27048 to 27648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,212 DEBUG Processing 647/662 atomic regions from SNP 193868 to 194468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,313 DEBUG Processing 250/703 atomic regions from SNP 74753 to 75353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,363 DEBUG Processing 556/720 atomic regions from SNP 166691 to 167291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,394 DEBUG Processing 92/672 atomic regions from SNP 27348 to 27948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,438 DEBUG Processing 648/662 atomic regions from SNP 194168 to 194768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,517 DEBUG Processing 251/703 atomic regions from SNP 75053 to 75653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,588 DEBUG Processing 557/720 atomic regions from SNP 166991 to 167591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,593 DEBUG Processing 93/672 atomic regions from SNP 27648 to 28248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,659 DEBUG Processing 649/662 atomic regions from SNP 194468 to 195068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,718 DEBUG Processing 252/703 atomic regions from SNP 75353 to 75953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,792 DEBUG Processing 94/672 atomic regions from SNP 27948 to 28548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,802 DEBUG Processing 558/720 atomic regions from SNP 167291 to 167891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:18,871 DEBUG Processing 650/662 atomic regions from SNP 194768 to 195368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:18,922 DEBUG Processing 253/703 atomic regions from SNP 75653 to 76253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,990 DEBUG Processing 95/672 atomic regions from SNP 28248 to 28848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,010 DEBUG Processing 559/720 atomic regions from SNP 167591 to 168191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,062 DEBUG Processing 651/662 atomic regions from SNP 195068 to 195668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,125 DEBUG Processing 254/703 atomic regions from SNP 75953 to 76553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,186 DEBUG Processing 96/672 atomic regions from SNP 28548 to 29148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,223 DEBUG Processing 560/720 atomic regions from SNP 167891 to 168491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,254 DEBUG Processing 652/662 atomic regions from SNP 195368 to 195968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,328 DEBUG Processing 255/703 atomic regions from SNP 76253 to 76853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,385 DEBUG Processing 97/672 atomic regions from SNP 28848 to 29448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,433 DEBUG Processing 561/720 atomic regions from SNP 168191 to 168791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,449 DEBUG Processing 653/662 atomic regions from SNP 195668 to 196268 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,536 DEBUG Processing 256/703 atomic regions from SNP 76553 to 77153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,578 DEBUG Processing 98/672 atomic regions from SNP 29148 to 29748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,644 DEBUG Processing 562/720 atomic regions from SNP 168491 to 169091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,654 DEBUG Processing 654/662 atomic regions from SNP 195968 to 196568 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,743 DEBUG Processing 257/703 atomic regions from SNP 76853 to 77453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,772 DEBUG Processing 99/672 atomic regions from SNP 29448 to 30048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,846 DEBUG Processing 655/662 atomic regions from SNP 196268 to 196868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:19,855 DEBUG Processing 563/720 atomic regions from SNP 168791 to 169391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:19,950 DEBUG Processing 258/703 atomic regions from SNP 77153 to 77753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,966 DEBUG Processing 100/672 atomic regions from SNP 29748 to 30348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,042 DEBUG Processing 656/662 atomic regions from SNP 196568 to 197168 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,067 DEBUG Processing 564/720 atomic regions from SNP 169091 to 169691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,160 DEBUG Processing 259/703 atomic regions from SNP 77453 to 78053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,165 DEBUG Processing 101/672 atomic regions from SNP 30048 to 30648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,232 DEBUG Processing 657/662 atomic regions from SNP 196868 to 197468 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,278 DEBUG Processing 565/720 atomic regions from SNP 169391 to 169991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,366 DEBUG Processing 260/703 atomic regions from SNP 77753 to 78353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,396 DEBUG Processing 102/672 atomic regions from SNP 30348 to 30948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,419 DEBUG Processing 658/662 atomic regions from SNP 197168 to 197768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,488 DEBUG Processing 566/720 atomic regions from SNP 169691 to 170291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,570 DEBUG Processing 261/703 atomic regions from SNP 78053 to 78653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,618 DEBUG Processing 659/662 atomic regions from SNP 197468 to 198068 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,619 DEBUG Processing 103/672 atomic regions from SNP 30648 to 31248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,695 DEBUG Processing 567/720 atomic regions from SNP 169991 to 170591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,798 DEBUG Processing 262/703 atomic regions from SNP 78353 to 78953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,806 DEBUG Processing 660/662 atomic regions from SNP 197768 to 198368 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:20,817 DEBUG Processing 104/672 atomic regions from SNP 30948 to 31548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,910 DEBUG Processing 568/720 atomic regions from SNP 170291 to 170891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:20,994 DEBUG Processing 661/662 atomic regions from SNP 198068 to 198668 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:21,020 DEBUG Processing 263/703 atomic regions from SNP 78653 to 79253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,035 DEBUG Processing 105/672 atomic regions from SNP 31248 to 31848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,132 DEBUG Processing 569/720 atomic regions from SNP 170591 to 171191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,184 DEBUG Processing 662/662 atomic regions from SNP 198368 to 198968 for chr14 (subchromosome 2 of 2). 2025-01-31 09:56:21,219 DEBUG Processing 264/703 atomic regions from SNP 78953 to 79553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,262 DEBUG Processing 106/672 atomic regions from SNP 31548 to 32148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,288 DEBUG Unique SNPs positions in subchromosome 2: 198969 2025-01-31 09:56:21,352 DEBUG Processing 570/720 atomic regions from SNP 170891 to 171491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,419 DEBUG Processing 265/703 atomic regions from SNP 79253 to 79853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,489 DEBUG Processing 107/672 atomic regions from SNP 31848 to 32448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,567 DEBUG Processing 571/720 atomic regions from SNP 171191 to 171791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,617 DEBUG Processing 266/703 atomic regions from SNP 79553 to 80153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,684 DEBUG Processing 108/672 atomic regions from SNP 32148 to 32748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,785 DEBUG Processing 572/720 atomic regions from SNP 171491 to 172091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:21,824 DEBUG Processing 267/703 atomic regions from SNP 79853 to 80453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,898 DEBUG Processing 109/672 atomic regions from SNP 32448 to 33048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,003 DEBUG Processing 573/720 atomic regions from SNP 171791 to 172391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,042 DEBUG Processing 268/703 atomic regions from SNP 80153 to 80753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,099 DEBUG Processing 110/672 atomic regions from SNP 32748 to 33348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,211 DEBUG Processing 574/720 atomic regions from SNP 172091 to 172691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,257 DEBUG Processing 269/703 atomic regions from SNP 80453 to 81053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,302 DEBUG Processing 111/672 atomic regions from SNP 33048 to 33648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,425 DEBUG Processing 575/720 atomic regions from SNP 172391 to 172991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,501 DEBUG Processing 270/703 atomic regions from SNP 80753 to 81353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,514 DEBUG Processing 112/672 atomic regions from SNP 33348 to 33948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,642 DEBUG Processing 576/720 atomic regions from SNP 172691 to 173291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,727 DEBUG Processing 271/703 atomic regions from SNP 81053 to 81653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,738 DEBUG Processing 113/672 atomic regions from SNP 33648 to 34248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,873 DEBUG Processing 577/720 atomic regions from SNP 172991 to 173591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:22,929 DEBUG Processing 272/703 atomic regions from SNP 81353 to 81953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,960 DEBUG Processing 114/672 atomic regions from SNP 33948 to 34548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,104 DEBUG Processing 578/720 atomic regions from SNP 173291 to 173891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,128 DEBUG Processing 273/703 atomic regions from SNP 81653 to 82253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,185 DEBUG Processing 115/672 atomic regions from SNP 34248 to 34848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,312 DEBUG Processing 579/720 atomic regions from SNP 173591 to 174191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,330 DEBUG Processing 274/703 atomic regions from SNP 81953 to 82553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,404 DEBUG Processing 116/672 atomic regions from SNP 34548 to 35148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,534 DEBUG Processing 275/703 atomic regions from SNP 82253 to 82853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,544 DEBUG Processing 580/720 atomic regions from SNP 173891 to 174491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,602 DEBUG Processing 117/672 atomic regions from SNP 34848 to 35448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,745 DEBUG Processing 276/703 atomic regions from SNP 82553 to 83153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,771 DEBUG Processing 581/720 atomic regions from SNP 174191 to 174791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:23,811 DEBUG Processing 118/672 atomic regions from SNP 35148 to 35748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,950 DEBUG Processing 277/703 atomic regions from SNP 82853 to 83453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,982 DEBUG Processing 582/720 atomic regions from SNP 174491 to 175091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,029 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:56:24,032 DEBUG Processing 119/672 atomic regions from SNP 35448 to 36048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,188 DEBUG Processing 278/703 atomic regions from SNP 83153 to 83753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,200 DEBUG Processing 583/720 atomic regions from SNP 174791 to 175391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,257 DEBUG Processing 120/672 atomic regions from SNP 35748 to 36348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,417 DEBUG Processing 584/720 atomic regions from SNP 175091 to 175691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,421 DEBUG Processing 279/703 atomic regions from SNP 83453 to 84053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,493 DEBUG Processing 121/672 atomic regions from SNP 36048 to 36648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,634 DEBUG Processing 585/720 atomic regions from SNP 175391 to 175991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,654 DEBUG Processing 280/703 atomic regions from SNP 83753 to 84353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,716 DEBUG Processing 122/672 atomic regions from SNP 36348 to 36948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,851 DEBUG Processing 586/720 atomic regions from SNP 175691 to 176291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:24,883 DEBUG Processing 281/703 atomic regions from SNP 84053 to 84653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,939 DEBUG Processing 123/672 atomic regions from SNP 36648 to 37248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,067 DEBUG Processing 587/720 atomic regions from SNP 175991 to 176591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,106 DEBUG Processing 282/703 atomic regions from SNP 84353 to 84953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,155 DEBUG Processing 124/672 atomic regions from SNP 36948 to 37548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,283 DEBUG Processing 588/720 atomic regions from SNP 176291 to 176891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,342 DEBUG Processing 283/703 atomic regions from SNP 84653 to 85253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,358 DEBUG Processing 125/672 atomic regions from SNP 37248 to 37848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,501 DEBUG Processing 589/720 atomic regions from SNP 176591 to 177191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,553 DEBUG Processing 284/703 atomic regions from SNP 84953 to 85553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,562 DEBUG Processing 126/672 atomic regions from SNP 37548 to 38148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,732 DEBUG Processing 590/720 atomic regions from SNP 176891 to 177491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,763 DEBUG Processing 285/703 atomic regions from SNP 85253 to 85853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,767 DEBUG Processing 127/672 atomic regions from SNP 37848 to 38448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,968 DEBUG Processing 286/703 atomic regions from SNP 85553 to 86153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,969 DEBUG Processing 591/720 atomic regions from SNP 177191 to 177791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:25,970 DEBUG Processing 128/672 atomic regions from SNP 38148 to 38748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,176 DEBUG Processing 287/703 atomic regions from SNP 85853 to 86453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,178 DEBUG Processing 129/672 atomic regions from SNP 38448 to 39048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,188 DEBUG Processing 592/720 atomic regions from SNP 177491 to 178091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,387 DEBUG Processing 288/703 atomic regions from SNP 86153 to 86753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,399 DEBUG Processing 130/672 atomic regions from SNP 38748 to 39348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,416 DEBUG Processing 593/720 atomic regions from SNP 177791 to 178391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,601 DEBUG Processing 289/703 atomic regions from SNP 86453 to 87053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,605 DEBUG Processing 131/672 atomic regions from SNP 39048 to 39648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,657 DEBUG Processing 594/720 atomic regions from SNP 178091 to 178691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:26,808 DEBUG Processing 132/672 atomic regions from SNP 39348 to 39948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,829 DEBUG Processing 290/703 atomic regions from SNP 86753 to 87353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,890 DEBUG Processing 595/720 atomic regions from SNP 178391 to 178991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,010 DEBUG Processing 133/672 atomic regions from SNP 39648 to 40248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,048 DEBUG Processing 291/703 atomic regions from SNP 87053 to 87653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,104 DEBUG Processing 596/720 atomic regions from SNP 178691 to 179291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,213 DEBUG Processing 134/672 atomic regions from SNP 39948 to 40548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,256 DEBUG Processing 292/703 atomic regions from SNP 87353 to 87953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,318 DEBUG Processing 597/720 atomic regions from SNP 178991 to 179591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,414 DEBUG Processing 135/672 atomic regions from SNP 40248 to 40848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,475 DEBUG Processing 293/703 atomic regions from SNP 87653 to 88253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,532 DEBUG Processing 598/720 atomic regions from SNP 179291 to 179891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,611 DEBUG Processing 136/672 atomic regions from SNP 40548 to 41148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,681 DEBUG Processing 294/703 atomic regions from SNP 87953 to 88553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,747 DEBUG Processing 599/720 atomic regions from SNP 179591 to 180191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:27,810 DEBUG Processing 137/672 atomic regions from SNP 40848 to 41448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,890 DEBUG Processing 295/703 atomic regions from SNP 88253 to 88853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,958 DEBUG Processing 600/720 atomic regions from SNP 179891 to 180491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,005 DEBUG Processing 138/672 atomic regions from SNP 41148 to 41748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,102 DEBUG Processing 296/703 atomic regions from SNP 88553 to 89153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,175 DEBUG Processing 601/720 atomic regions from SNP 180191 to 180791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,204 DEBUG Processing 139/672 atomic regions from SNP 41448 to 42048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,311 DEBUG Processing 297/703 atomic regions from SNP 88853 to 89453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,387 DEBUG Processing 602/720 atomic regions from SNP 180491 to 181091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,403 DEBUG Processing 140/672 atomic regions from SNP 41748 to 42348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,542 DEBUG Processing 298/703 atomic regions from SNP 89153 to 89753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,602 DEBUG Processing 603/720 atomic regions from SNP 180791 to 181391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,605 DEBUG Processing 141/672 atomic regions from SNP 42048 to 42648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,767 DEBUG Processing 299/703 atomic regions from SNP 89453 to 90053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,806 DEBUG Processing 142/672 atomic regions from SNP 42348 to 42948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,821 DEBUG Processing 604/720 atomic regions from SNP 181091 to 181691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:28,977 DEBUG Processing 300/703 atomic regions from SNP 89753 to 90353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,014 DEBUG Processing 143/672 atomic regions from SNP 42648 to 43248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,045 DEBUG Processing 605/720 atomic regions from SNP 181391 to 181991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,190 DEBUG Processing 301/703 atomic regions from SNP 90053 to 90653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,217 DEBUG Processing 144/672 atomic regions from SNP 42948 to 43548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,263 DEBUG Processing 606/720 atomic regions from SNP 181691 to 182291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,415 DEBUG Processing 302/703 atomic regions from SNP 90353 to 90953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,421 DEBUG Processing 145/672 atomic regions from SNP 43248 to 43848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,484 DEBUG Processing 607/720 atomic regions from SNP 181991 to 182591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,628 DEBUG Processing 303/703 atomic regions from SNP 90653 to 91253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,639 DEBUG Processing 146/672 atomic regions from SNP 43548 to 44148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,715 DEBUG Processing 608/720 atomic regions from SNP 182291 to 182891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:29,840 DEBUG Processing 304/703 atomic regions from SNP 90953 to 91553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,841 DEBUG Processing 147/672 atomic regions from SNP 43848 to 44448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,931 DEBUG Processing 609/720 atomic regions from SNP 182591 to 183191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,048 DEBUG Processing 148/672 atomic regions from SNP 44148 to 44748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,053 DEBUG Processing 305/703 atomic regions from SNP 91253 to 91853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,154 DEBUG Processing 610/720 atomic regions from SNP 182891 to 183491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,246 DEBUG Processing 149/672 atomic regions from SNP 44448 to 45048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,261 DEBUG Processing 306/703 atomic regions from SNP 91553 to 92153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,370 DEBUG Processing 611/720 atomic regions from SNP 183191 to 183791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,441 DEBUG Processing 150/672 atomic regions from SNP 44748 to 45348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,473 DEBUG Processing 307/703 atomic regions from SNP 91853 to 92453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,612 DEBUG Processing 612/720 atomic regions from SNP 183491 to 184091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,645 DEBUG Processing 151/672 atomic regions from SNP 45048 to 45648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,683 DEBUG Processing 308/703 atomic regions from SNP 92153 to 92753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,854 DEBUG Processing 613/720 atomic regions from SNP 183791 to 184391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:30,870 DEBUG Processing 152/672 atomic regions from SNP 45348 to 45948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,894 DEBUG Processing 309/703 atomic regions from SNP 92453 to 93053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,071 DEBUG Processing 153/672 atomic regions from SNP 45648 to 46248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,100 DEBUG Processing 614/720 atomic regions from SNP 184091 to 184691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,104 DEBUG Processing 310/703 atomic regions from SNP 92753 to 93353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,256 DEBUG Segmenting atomic regions: 2025-01-31 09:56:31,281 DEBUG Processing 154/672 atomic regions from SNP 45948 to 46548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,314 DEBUG Processing 311/703 atomic regions from SNP 93053 to 93653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,319 DEBUG Processing 615/720 atomic regions from SNP 184391 to 184991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,342 DEBUG Processing 1/659 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,487 DEBUG Processing 155/672 atomic regions from SNP 46248 to 46848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,538 DEBUG Processing 312/703 atomic regions from SNP 93353 to 93953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,557 DEBUG Processing 2/659 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,560 DEBUG Processing 616/720 atomic regions from SNP 184691 to 185291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,691 DEBUG Processing 156/672 atomic regions from SNP 46548 to 47148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,752 DEBUG Processing 313/703 atomic regions from SNP 93653 to 94253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,785 DEBUG Processing 3/659 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,805 DEBUG Processing 617/720 atomic regions from SNP 184991 to 185591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:31,898 DEBUG Processing 157/672 atomic regions from SNP 46848 to 47448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,986 DEBUG Processing 314/703 atomic regions from SNP 93953 to 94553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,015 DEBUG Processing 4/659 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,022 DEBUG Processing 618/720 atomic regions from SNP 185291 to 185891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,137 DEBUG Processing 158/672 atomic regions from SNP 47148 to 47748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,218 DEBUG Processing 315/703 atomic regions from SNP 94253 to 94853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,235 DEBUG Processing 5/659 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,268 DEBUG Processing 619/720 atomic regions from SNP 185591 to 186191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,358 DEBUG Processing 159/672 atomic regions from SNP 47448 to 48048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,436 DEBUG Processing 316/703 atomic regions from SNP 94553 to 95153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,454 DEBUG Processing 6/659 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,512 DEBUG Processing 620/720 atomic regions from SNP 185891 to 186491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,556 DEBUG Processing 160/672 atomic regions from SNP 47748 to 48348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,654 DEBUG Processing 317/703 atomic regions from SNP 94853 to 95453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,667 DEBUG Processing 7/659 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,751 DEBUG Processing 161/672 atomic regions from SNP 48048 to 48648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,757 DEBUG Processing 621/720 atomic regions from SNP 186191 to 186791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:32,874 DEBUG Processing 318/703 atomic regions from SNP 95153 to 95753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,877 DEBUG Processing 8/659 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,946 DEBUG Processing 162/672 atomic regions from SNP 48348 to 48948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,990 DEBUG Processing 622/720 atomic regions from SNP 186491 to 187091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,074 DEBUG Processing 9/659 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,092 DEBUG Processing 319/703 atomic regions from SNP 95453 to 96053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,140 DEBUG Processing 163/672 atomic regions from SNP 48648 to 49248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,236 DEBUG Processing 623/720 atomic regions from SNP 186791 to 187391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,277 DEBUG Processing 10/659 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,294 DEBUG Processing 320/703 atomic regions from SNP 95753 to 96353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,335 DEBUG Processing 164/672 atomic regions from SNP 48948 to 49548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,481 DEBUG Processing 624/720 atomic regions from SNP 187091 to 187691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,490 DEBUG Processing 11/659 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,497 DEBUG Processing 321/703 atomic regions from SNP 96053 to 96653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,532 DEBUG Processing 165/672 atomic regions from SNP 49248 to 49848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,715 DEBUG Processing 12/659 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,722 DEBUG Processing 625/720 atomic regions from SNP 187391 to 187991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,731 DEBUG Processing 166/672 atomic regions from SNP 49548 to 50148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,732 DEBUG Processing 322/703 atomic regions from SNP 96353 to 96953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,915 DEBUG Processing 13/659 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,929 DEBUG Processing 167/672 atomic regions from SNP 49848 to 50448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,967 DEBUG Processing 626/720 atomic regions from SNP 187691 to 188291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:33,967 DEBUG Processing 323/703 atomic regions from SNP 96653 to 97253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,112 DEBUG Processing 14/659 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,129 DEBUG Processing 168/672 atomic regions from SNP 50148 to 50748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,209 DEBUG Processing 324/703 atomic regions from SNP 96953 to 97553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,221 DEBUG Processing 627/720 atomic regions from SNP 187991 to 188591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,314 DEBUG Processing 15/659 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,345 DEBUG Processing 169/672 atomic regions from SNP 50448 to 51048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,431 DEBUG Processing 325/703 atomic regions from SNP 97253 to 97853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,468 DEBUG Processing 628/720 atomic regions from SNP 188291 to 188891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,507 DEBUG Processing 16/659 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,556 DEBUG Processing 170/672 atomic regions from SNP 50748 to 51348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,636 DEBUG Processing 326/703 atomic regions from SNP 97553 to 98153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,699 DEBUG Processing 17/659 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,714 DEBUG Processing 629/720 atomic regions from SNP 188591 to 189191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:34,754 DEBUG Processing 171/672 atomic regions from SNP 51048 to 51648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,848 DEBUG Processing 327/703 atomic regions from SNP 97853 to 98453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,898 DEBUG Processing 18/659 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,958 DEBUG Processing 172/672 atomic regions from SNP 51348 to 51948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,960 DEBUG Processing 630/720 atomic regions from SNP 188891 to 189491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,084 DEBUG Processing 328/703 atomic regions from SNP 98153 to 98753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,109 DEBUG Processing 19/659 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,166 DEBUG Processing 173/672 atomic regions from SNP 51648 to 52248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,185 DEBUG Processing 631/720 atomic regions from SNP 189191 to 189791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,312 DEBUG Processing 20/659 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,317 DEBUG Processing 329/703 atomic regions from SNP 98453 to 99053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,381 DEBUG Processing 174/672 atomic regions from SNP 51948 to 52548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,385 DEBUG Subchromosome time: 182.50370975700207, subchromosome SNPs: 198969 2025-01-31 09:56:35,386 DEBUG Estimated BADs: [0.34, 1.36, 6.80, 1.36, 4.08, 1.36, 0.34, 2.72, 0.45, 2.72, 0.68, 5.44, 1.36, 10.88, 0.68, 4.08, 0.68, 2.72, 1.36, 2.72, 0.68, 1.36, 2.72, 0.23, 1.36, 0.27, 0.68, 10.88, 0.68, 0.34, 1.36, 4.08, 1.36] SNP counts: [154, 21035, 4130, 14013, 9894, 3632, 5654, 956, 1745, 8098, 2440, 895, 1065, 694, 1182, 8175, 1151, 14105, 4199, 3936, 2667, 2675, 10521, 9885, 2701, 17416, 8782, 120, 5196, 16799, 9087, 1424, 4697] SNP IDs counts: [154, 21035, 4130, 14013, 9894, 3632, 5654, 956, 1745, 8098, 2440, 895, 1065, 694, 1182, 8175, 1151, 14105, 4199, 3936, 2667, 2675, 10521, 9885, 2701, 17416, 8782, 120, 5196, 16799, 9087, 1424, 4697] Critical gap: 623163bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.72Mbp], 19.70Mbp, 21.87Mbp, 29.86Mbp, 35.10Mbp, 37.17Mbp, 40.56Mbp, 41.11Mbp, 44.86Mbp, 49.25Mbp, 50.77Mbp, 51.27Mbp, 51.98Mbp, 52.34Mbp, 53.70Mbp, 58.18Mbp, 58.83Mbp, 66.41Mbp, 68.70Mbp, 71.26Mbp, 72.77Mbp, 74.32Mbp, 79.99Mbp, 86.09Mbp, 87.58Mbp, 98.09Mbp, 103.05Mbp, 103.12Mbp, 106.06Mbp, 116.22Mbp, 121.25Mbp, 121.99Mbp, 124.90Mbp] 2025-01-31 09:56:35,386 DEBUG chr14 time: 182.50426628801506 s 2025-01-31 09:56:35,399 DEBUG Processing 632/720 atomic regions from SNP 189491 to 190091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,510 DEBUG chr14: Fitting background model for 33 segments 2025-01-31 09:56:35,517 DEBUG Processing 21/659 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,560 DEBUG Processing 330/703 atomic regions from SNP 98753 to 99353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,611 DEBUG Processing 175/672 atomic regions from SNP 52248 to 52848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,614 DEBUG Processing 633/720 atomic regions from SNP 189791 to 190391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,721 DEBUG Processing 22/659 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,791 DEBUG Processing 331/703 atomic regions from SNP 99053 to 99653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,850 DEBUG Processing 176/672 atomic regions from SNP 52548 to 53148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,856 DEBUG Processing 634/720 atomic regions from SNP 190091 to 190691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:35,924 DEBUG Processing 23/659 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,025 DEBUG Processing 332/703 atomic regions from SNP 99353 to 99953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,075 DEBUG Processing 177/672 atomic regions from SNP 52848 to 53448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,094 DEBUG Processing 635/720 atomic regions from SNP 190391 to 190991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,126 DEBUG Processing 24/659 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,255 DEBUG Processing 333/703 atomic regions from SNP 99653 to 100253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,272 DEBUG Processing 178/672 atomic regions from SNP 53148 to 53748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,323 DEBUG Processing 25/659 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,332 DEBUG Processing 636/720 atomic regions from SNP 190691 to 191291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,474 DEBUG Processing 179/672 atomic regions from SNP 53448 to 54048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,482 DEBUG Processing 334/703 atomic regions from SNP 99953 to 100553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,525 DEBUG Processing 26/659 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,573 DEBUG Processing 637/720 atomic regions from SNP 190991 to 191591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,678 DEBUG Processing 180/672 atomic regions from SNP 53748 to 54348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,688 DEBUG Processing 335/703 atomic regions from SNP 100253 to 100853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,727 DEBUG Processing 27/659 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,809 DEBUG Processing 638/720 atomic regions from SNP 191291 to 191891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:36,881 DEBUG Processing 181/672 atomic regions from SNP 54048 to 54648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,895 DEBUG Processing 336/703 atomic regions from SNP 100553 to 101153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,939 DEBUG Processing 28/659 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,055 DEBUG Processing 639/720 atomic regions from SNP 191591 to 192191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,082 DEBUG Processing 182/672 atomic regions from SNP 54348 to 54948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,117 DEBUG Processing 337/703 atomic regions from SNP 100853 to 101453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,145 DEBUG Processing 29/659 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,289 DEBUG Processing 183/672 atomic regions from SNP 54648 to 55248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,297 DEBUG Processing 640/720 atomic regions from SNP 191891 to 192491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,344 DEBUG Processing 338/703 atomic regions from SNP 101153 to 101753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,346 DEBUG Processing 30/659 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,497 DEBUG Processing 184/672 atomic regions from SNP 54948 to 55548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,536 DEBUG Processing 641/720 atomic regions from SNP 192191 to 192791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,549 DEBUG Processing 31/659 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,570 DEBUG Processing 339/703 atomic regions from SNP 101453 to 102053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,725 DEBUG Processing 185/672 atomic regions from SNP 55248 to 55848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,749 DEBUG Processing 32/659 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,762 DEBUG Processing 642/720 atomic regions from SNP 192491 to 193091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:37,788 DEBUG Processing 340/703 atomic regions from SNP 101753 to 102353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,943 DEBUG Processing 186/672 atomic regions from SNP 55548 to 56148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,978 DEBUG Processing 33/659 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,986 DEBUG Processing 643/720 atomic regions from SNP 192791 to 193391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,006 DEBUG Processing 341/703 atomic regions from SNP 102053 to 102653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,156 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:56:38,158 DEBUG chr15: Signal quantile: 0.988. signal threshold: 16. Best RMSEA: 0.010 2025-01-31 09:56:38,174 DEBUG Processing 187/672 atomic regions from SNP 55848 to 56448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,207 DEBUG Processing 34/659 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,216 DEBUG Processing 644/720 atomic regions from SNP 193091 to 193691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,235 DEBUG Processing 342/703 atomic regions from SNP 102353 to 102953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,396 DEBUG Processing 188/672 atomic regions from SNP 56148 to 56748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,429 DEBUG Processing 35/659 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,446 DEBUG Processing 645/720 atomic regions from SNP 193391 to 193991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,460 DEBUG Processing 343/703 atomic regions from SNP 102653 to 103253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,608 DEBUG Processing 189/672 atomic regions from SNP 56448 to 57048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,644 DEBUG Processing 36/659 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,676 DEBUG Processing 646/720 atomic regions from SNP 193691 to 194291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,712 DEBUG Processing 344/703 atomic regions from SNP 102953 to 103553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,810 DEBUG Processing 190/672 atomic regions from SNP 56748 to 57348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,851 DEBUG Processing 37/659 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,898 DEBUG Processing 647/720 atomic regions from SNP 193991 to 194591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:38,940 DEBUG Processing 345/703 atomic regions from SNP 103253 to 103853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,019 DEBUG Processing 191/672 atomic regions from SNP 57048 to 57648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,053 DEBUG Processing 38/659 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,118 DEBUG Processing 648/720 atomic regions from SNP 194291 to 194891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,160 DEBUG Processing 346/703 atomic regions from SNP 103553 to 104153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,224 DEBUG Processing 192/672 atomic regions from SNP 57348 to 57948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,257 DEBUG Processing 39/659 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,339 DEBUG Processing 649/720 atomic regions from SNP 194591 to 195191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,380 DEBUG Processing 347/703 atomic regions from SNP 103853 to 104453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,437 DEBUG Processing 193/672 atomic regions from SNP 57648 to 58248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,463 DEBUG Processing 40/659 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,565 DEBUG Processing 650/720 atomic regions from SNP 194891 to 195491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,600 DEBUG Processing 348/703 atomic regions from SNP 104153 to 104753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,644 DEBUG Processing 194/672 atomic regions from SNP 57948 to 58548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,667 DEBUG Processing 41/659 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,789 DEBUG Processing 651/720 atomic regions from SNP 195191 to 195791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:39,815 DEBUG Processing 349/703 atomic regions from SNP 104453 to 105053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,850 DEBUG Processing 195/672 atomic regions from SNP 58248 to 58848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,874 DEBUG Processing 42/659 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,010 DEBUG Processing 652/720 atomic regions from SNP 195491 to 196091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,031 DEBUG Processing 350/703 atomic regions from SNP 104753 to 105353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,032 DEBUG chr15 total SNP count: 178522 2025-01-31 09:56:40,032 DEBUG chr15 length: 104043685 2025-01-31 09:56:40,032 DEBUG ----------------------------------------- 2025-01-31 09:56:40,033 INFO Processing SNPs in chr15 2025-01-31 09:56:40,063 DEBUG Processing 196/672 atomic regions from SNP 58548 to 59148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,080 DEBUG Processing 43/659 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,215 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 178522)] 2025-01-31 09:56:40,235 DEBUG Processing 653/720 atomic regions from SNP 195791 to 196391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,258 DEBUG Processing 351/703 atomic regions from SNP 105053 to 105653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,287 DEBUG Processing 197/672 atomic regions from SNP 58848 to 59448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,300 DEBUG Processing 44/659 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,336 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:40,460 DEBUG Processing 654/720 atomic regions from SNP 196091 to 196691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,476 DEBUG Processing 352/703 atomic regions from SNP 105353 to 105953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,508 DEBUG Processing 45/659 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,537 DEBUG Processing 198/672 atomic regions from SNP 59148 to 59748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,678 DEBUG Processing 655/720 atomic regions from SNP 196391 to 196991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,688 DEBUG Processing 353/703 atomic regions from SNP 105653 to 106253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,708 DEBUG Processing 46/659 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,767 DEBUG Processing 199/672 atomic regions from SNP 59448 to 60048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,900 DEBUG Processing 656/720 atomic regions from SNP 196691 to 197291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:40,902 DEBUG Processing 354/703 atomic regions from SNP 105953 to 106553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,911 DEBUG Processing 47/659 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,974 DEBUG Processing 200/672 atomic regions from SNP 59748 to 60348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,113 DEBUG Processing 355/703 atomic regions from SNP 106253 to 106853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,114 DEBUG Processing 48/659 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,121 DEBUG Processing 657/720 atomic regions from SNP 196991 to 197591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,184 DEBUG Processing 201/672 atomic regions from SNP 60048 to 60648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,316 DEBUG Processing 49/659 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,320 DEBUG Processing 356/703 atomic regions from SNP 106553 to 107153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,344 DEBUG Processing 658/720 atomic regions from SNP 197291 to 197891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,407 DEBUG Processing 202/672 atomic regions from SNP 60348 to 60948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,520 DEBUG Processing 50/659 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,542 DEBUG Processing 357/703 atomic regions from SNP 106853 to 107453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,591 DEBUG Processing 659/720 atomic regions from SNP 197591 to 198191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,642 DEBUG Processing 203/672 atomic regions from SNP 60648 to 61248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,732 DEBUG Processing 51/659 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,759 DEBUG Processing 358/703 atomic regions from SNP 107153 to 107753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,821 DEBUG Processing 660/720 atomic regions from SNP 197891 to 198491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:41,846 DEBUG Processing 204/672 atomic regions from SNP 60948 to 61548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,946 DEBUG Processing 52/659 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,970 DEBUG Processing 359/703 atomic regions from SNP 107453 to 108053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,051 DEBUG Processing 205/672 atomic regions from SNP 61248 to 61848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,064 DEBUG Processing 661/720 atomic regions from SNP 198191 to 198791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,153 DEBUG Processing 53/659 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,176 DEBUG Processing 360/703 atomic regions from SNP 107753 to 108353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,250 DEBUG Processing 206/672 atomic regions from SNP 61548 to 62148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,291 DEBUG Processing 662/720 atomic regions from SNP 198491 to 199091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,365 DEBUG Processing 54/659 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,385 DEBUG Processing 361/703 atomic regions from SNP 108053 to 108653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,452 DEBUG Processing 207/672 atomic regions from SNP 61848 to 62448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,528 DEBUG Processing 663/720 atomic regions from SNP 198791 to 199391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,570 DEBUG Processing 55/659 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,604 DEBUG Processing 362/703 atomic regions from SNP 108353 to 108953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,657 DEBUG Processing 208/672 atomic regions from SNP 62148 to 62748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,751 DEBUG Processing 664/720 atomic regions from SNP 199091 to 199691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,772 DEBUG Processing 56/659 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,810 DEBUG Processing 363/703 atomic regions from SNP 108653 to 109253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,862 DEBUG Processing 209/672 atomic regions from SNP 62448 to 63048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,967 DEBUG Processing 665/720 atomic regions from SNP 199391 to 199991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:42,977 DEBUG Processing 57/659 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,016 DEBUG Processing 364/703 atomic regions from SNP 108953 to 109553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,066 DEBUG Processing 210/672 atomic regions from SNP 62748 to 63348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,183 DEBUG Processing 58/659 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,193 DEBUG Processing 666/720 atomic regions from SNP 199691 to 200291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,224 DEBUG Processing 365/703 atomic regions from SNP 109253 to 109853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,269 DEBUG Processing 211/672 atomic regions from SNP 63048 to 63648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,391 DEBUG Processing 59/659 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,409 DEBUG Processing 667/720 atomic regions from SNP 199991 to 200591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,437 DEBUG Processing 366/703 atomic regions from SNP 109553 to 110153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,472 DEBUG Processing 212/672 atomic regions from SNP 63348 to 63948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,601 DEBUG Processing 60/659 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,629 DEBUG Processing 668/720 atomic regions from SNP 200291 to 200891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,649 DEBUG Processing 367/703 atomic regions from SNP 109853 to 110453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,685 DEBUG Processing 213/672 atomic regions from SNP 63648 to 64248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,811 DEBUG Processing 61/659 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,851 DEBUG Processing 669/720 atomic regions from SNP 200591 to 201191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:43,864 DEBUG Processing 368/703 atomic regions from SNP 110153 to 110753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,894 DEBUG Processing 214/672 atomic regions from SNP 63948 to 64548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,014 DEBUG Processing 62/659 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,072 DEBUG Processing 670/720 atomic regions from SNP 200891 to 201491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,078 DEBUG Processing 369/703 atomic regions from SNP 110453 to 111053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,102 DEBUG Processing 215/672 atomic regions from SNP 64248 to 64848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,219 DEBUG Processing 63/659 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,288 DEBUG Processing 370/703 atomic regions from SNP 110753 to 111353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,292 DEBUG Processing 671/720 atomic regions from SNP 201191 to 201791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,309 DEBUG Processing 216/672 atomic regions from SNP 64548 to 65148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,425 DEBUG Processing 64/659 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,507 DEBUG Processing 371/703 atomic regions from SNP 111053 to 111653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,513 DEBUG Processing 672/720 atomic regions from SNP 201491 to 202091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,543 DEBUG Processing 217/672 atomic regions from SNP 64848 to 65448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,632 DEBUG Processing 65/659 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,717 DEBUG Processing 372/703 atomic regions from SNP 111353 to 111953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,732 DEBUG Processing 673/720 atomic regions from SNP 201791 to 202391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,756 DEBUG Processing 218/672 atomic regions from SNP 65148 to 65748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,843 DEBUG Processing 66/659 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,941 DEBUG Processing 373/703 atomic regions from SNP 111653 to 112253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,959 DEBUG Processing 674/720 atomic regions from SNP 202091 to 202691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:44,975 DEBUG Processing 219/672 atomic regions from SNP 65448 to 66048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,049 DEBUG Processing 67/659 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,152 DEBUG Processing 374/703 atomic regions from SNP 111953 to 112553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,181 DEBUG Processing 675/720 atomic regions from SNP 202391 to 202991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,183 DEBUG Processing 220/672 atomic regions from SNP 65748 to 66348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,260 DEBUG Processing 68/659 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,367 DEBUG Processing 375/703 atomic regions from SNP 112253 to 112853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,393 DEBUG Processing 221/672 atomic regions from SNP 66048 to 66648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,406 DEBUG Processing 676/720 atomic regions from SNP 202691 to 203291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,466 DEBUG Processing 69/659 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,580 DEBUG Processing 376/703 atomic regions from SNP 112553 to 113153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,599 DEBUG Processing 222/672 atomic regions from SNP 66348 to 66948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,625 DEBUG Processing 677/720 atomic regions from SNP 202991 to 203591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,670 DEBUG Processing 70/659 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,793 DEBUG Processing 377/703 atomic regions from SNP 112853 to 113453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,805 DEBUG Processing 223/672 atomic regions from SNP 66648 to 67248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,847 DEBUG Processing 678/720 atomic regions from SNP 203291 to 203891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:45,886 DEBUG Processing 71/659 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,011 DEBUG Processing 378/703 atomic regions from SNP 113153 to 113753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,020 DEBUG Processing 224/672 atomic regions from SNP 66948 to 67548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,072 DEBUG Processing 679/720 atomic regions from SNP 203591 to 204191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,094 DEBUG Processing 72/659 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,222 DEBUG Processing 379/703 atomic regions from SNP 113453 to 114053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,224 DEBUG Processing 225/672 atomic regions from SNP 67248 to 67848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,289 DEBUG Processing 680/720 atomic regions from SNP 203891 to 204491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,303 DEBUG Processing 73/659 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,426 DEBUG Processing 226/672 atomic regions from SNP 67548 to 68148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,430 DEBUG Processing 380/703 atomic regions from SNP 113753 to 114353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,514 DEBUG Processing 681/720 atomic regions from SNP 204191 to 204791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,516 DEBUG Processing 74/659 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,634 DEBUG Processing 227/672 atomic regions from SNP 67848 to 68448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,652 DEBUG Processing 381/703 atomic regions from SNP 114053 to 114653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,730 DEBUG Processing 75/659 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,736 DEBUG Processing 682/720 atomic regions from SNP 204491 to 205091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:46,852 DEBUG Processing 228/672 atomic regions from SNP 68148 to 68748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,880 DEBUG Processing 382/703 atomic regions from SNP 114353 to 114953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,933 DEBUG Processing 76/659 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,951 DEBUG Processing 683/720 atomic regions from SNP 204791 to 205391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,052 DEBUG Processing 229/672 atomic regions from SNP 68448 to 69048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,116 DEBUG Processing 383/703 atomic regions from SNP 114653 to 115253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,135 DEBUG Processing 77/659 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,167 DEBUG Processing 684/720 atomic regions from SNP 205091 to 205691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,269 DEBUG Processing 230/672 atomic regions from SNP 68748 to 69348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,340 DEBUG Processing 78/659 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,349 DEBUG Processing 384/703 atomic regions from SNP 114953 to 115553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,384 DEBUG Processing 685/720 atomic regions from SNP 205391 to 205991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,496 DEBUG Processing 231/672 atomic regions from SNP 69048 to 69648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,546 DEBUG Processing 79/659 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,582 DEBUG Processing 385/703 atomic regions from SNP 115253 to 115853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,625 DEBUG Processing 686/720 atomic regions from SNP 205691 to 206291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,709 DEBUG Processing 232/672 atomic regions from SNP 69348 to 69948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,748 DEBUG Processing 80/659 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,819 DEBUG Processing 386/703 atomic regions from SNP 115553 to 116153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,855 DEBUG Processing 687/720 atomic regions from SNP 205991 to 206591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:47,933 DEBUG Processing 233/672 atomic regions from SNP 69648 to 70248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,974 DEBUG Processing 81/659 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,070 DEBUG Processing 688/720 atomic regions from SNP 206291 to 206891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,074 DEBUG Processing 387/703 atomic regions from SNP 115853 to 116453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,133 DEBUG Processing 234/672 atomic regions from SNP 69948 to 70548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,208 DEBUG Processing 82/659 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,289 DEBUG Processing 689/720 atomic regions from SNP 206591 to 207191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,322 DEBUG Processing 388/703 atomic regions from SNP 116153 to 116753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,333 DEBUG Processing 235/672 atomic regions from SNP 70248 to 70848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,425 DEBUG Processing 83/659 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,515 DEBUG Processing 690/720 atomic regions from SNP 206891 to 207491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,537 DEBUG Processing 236/672 atomic regions from SNP 70548 to 71148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,566 DEBUG Processing 389/703 atomic regions from SNP 116453 to 117053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,633 DEBUG Processing 84/659 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,745 DEBUG Processing 237/672 atomic regions from SNP 70848 to 71448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,755 DEBUG Processing 691/720 atomic regions from SNP 207191 to 207791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:48,805 DEBUG Processing 390/703 atomic regions from SNP 116753 to 117353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,854 DEBUG Processing 85/659 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,959 DEBUG Processing 238/672 atomic regions from SNP 71148 to 71748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,004 DEBUG Processing 692/720 atomic regions from SNP 207491 to 208091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,049 DEBUG Processing 391/703 atomic regions from SNP 117053 to 117653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,079 DEBUG Processing 86/659 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,170 DEBUG Processing 239/672 atomic regions from SNP 71448 to 72048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,241 DEBUG Processing 693/720 atomic regions from SNP 207791 to 208391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,276 DEBUG Processing 392/703 atomic regions from SNP 117353 to 117953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,307 DEBUG Processing 87/659 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,404 DEBUG Processing 240/672 atomic regions from SNP 71748 to 72348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,464 DEBUG Processing 694/720 atomic regions from SNP 208091 to 208691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,514 DEBUG Processing 393/703 atomic regions from SNP 117653 to 118253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,525 DEBUG Processing 88/659 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,622 DEBUG Processing 241/672 atomic regions from SNP 72048 to 72648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,689 DEBUG Processing 695/720 atomic regions from SNP 208391 to 208991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,740 DEBUG Processing 89/659 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,745 DEBUG Processing 394/703 atomic regions from SNP 117953 to 118553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,840 DEBUG Processing 242/672 atomic regions from SNP 72348 to 72948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,933 DEBUG Processing 696/720 atomic regions from SNP 208691 to 209291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:49,945 DEBUG Processing 90/659 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,959 DEBUG Processing 395/703 atomic regions from SNP 118253 to 118853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,041 DEBUG Processing 243/672 atomic regions from SNP 72648 to 73248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,151 DEBUG Processing 91/659 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,169 DEBUG Processing 396/703 atomic regions from SNP 118553 to 119153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,173 DEBUG Processing 697/720 atomic regions from SNP 208991 to 209591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,250 DEBUG Processing 244/672 atomic regions from SNP 72948 to 73548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,362 DEBUG Processing 92/659 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,387 DEBUG Processing 397/703 atomic regions from SNP 118853 to 119453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,406 DEBUG Processing 698/720 atomic regions from SNP 209291 to 209891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,463 DEBUG Processing 245/672 atomic regions from SNP 73248 to 73848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,568 DEBUG Processing 93/659 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,593 DEBUG Processing 398/703 atomic regions from SNP 119153 to 119753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,651 DEBUG Processing 699/720 atomic regions from SNP 209591 to 210191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,671 DEBUG Processing 246/672 atomic regions from SNP 73548 to 74148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,778 DEBUG Processing 94/659 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,799 DEBUG Processing 399/703 atomic regions from SNP 119453 to 120053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,886 DEBUG Processing 700/720 atomic regions from SNP 209891 to 210491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:50,903 DEBUG Processing 247/672 atomic regions from SNP 73848 to 74448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,990 DEBUG Processing 95/659 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,009 DEBUG Processing 400/703 atomic regions from SNP 119753 to 120353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,117 DEBUG Processing 701/720 atomic regions from SNP 210191 to 210791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,136 DEBUG Processing 248/672 atomic regions from SNP 74148 to 74748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,210 DEBUG Processing 96/659 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,220 DEBUG Processing 401/703 atomic regions from SNP 120053 to 120653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,340 DEBUG Processing 249/672 atomic regions from SNP 74448 to 75048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,345 DEBUG Processing 702/720 atomic regions from SNP 210491 to 211091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,444 DEBUG Processing 402/703 atomic regions from SNP 120353 to 120953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,445 DEBUG Processing 97/659 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,546 DEBUG Processing 250/672 atomic regions from SNP 74748 to 75348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,581 DEBUG Processing 703/720 atomic regions from SNP 210791 to 211391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,659 DEBUG Processing 98/659 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,663 DEBUG Processing 403/703 atomic regions from SNP 120653 to 121253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,745 DEBUG Processing 251/672 atomic regions from SNP 75048 to 75648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,824 DEBUG Processing 704/720 atomic regions from SNP 211091 to 211691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:51,871 DEBUG Processing 99/659 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,897 DEBUG Processing 404/703 atomic regions from SNP 120953 to 121553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,959 DEBUG Processing 252/672 atomic regions from SNP 75348 to 75948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,049 DEBUG Processing 705/720 atomic regions from SNP 211391 to 211991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,082 DEBUG Processing 100/659 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,116 DEBUG Processing 405/703 atomic regions from SNP 121253 to 121853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,185 DEBUG Processing 253/672 atomic regions from SNP 75648 to 76248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,293 DEBUG Processing 706/720 atomic regions from SNP 211691 to 212291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,303 DEBUG Processing 101/659 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,327 DEBUG Processing 406/703 atomic regions from SNP 121553 to 122153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,398 DEBUG Processing 254/672 atomic regions from SNP 75948 to 76548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,542 DEBUG Processing 707/720 atomic regions from SNP 211991 to 212591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,550 DEBUG Processing 102/659 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,550 DEBUG Processing 407/703 atomic regions from SNP 121853 to 122453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,624 DEBUG Processing 255/672 atomic regions from SNP 76248 to 76848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,771 DEBUG Processing 708/720 atomic regions from SNP 212291 to 212891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:52,776 DEBUG Processing 408/703 atomic regions from SNP 122153 to 122753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,796 DEBUG Processing 103/659 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,838 DEBUG Processing 256/672 atomic regions from SNP 76548 to 77148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,982 DEBUG Processing 409/703 atomic regions from SNP 122453 to 123053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,000 DEBUG Processing 709/720 atomic regions from SNP 212591 to 213191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,023 DEBUG Processing 104/659 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,036 DEBUG Processing 257/672 atomic regions from SNP 76848 to 77448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,189 DEBUG Processing 410/703 atomic regions from SNP 122753 to 123353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,235 DEBUG Processing 710/720 atomic regions from SNP 212891 to 213491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,241 DEBUG Processing 258/672 atomic regions from SNP 77148 to 77748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,255 DEBUG Processing 105/659 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,400 DEBUG Processing 411/703 atomic regions from SNP 123053 to 123653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,447 DEBUG Processing 259/672 atomic regions from SNP 77448 to 78048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,454 DEBUG Processing 711/720 atomic regions from SNP 213191 to 213791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,465 DEBUG Processing 106/659 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,615 DEBUG Processing 412/703 atomic regions from SNP 123353 to 123953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,653 DEBUG Processing 260/672 atomic regions from SNP 77748 to 78348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,670 DEBUG Processing 712/720 atomic regions from SNP 213491 to 214091 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:53,676 DEBUG Processing 107/659 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,827 DEBUG Processing 413/703 atomic regions from SNP 123653 to 124253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,859 DEBUG Processing 261/672 atomic regions from SNP 78048 to 78648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,884 DEBUG Processing 108/659 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,888 DEBUG Processing 713/720 atomic regions from SNP 213791 to 214391 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,038 DEBUG Processing 414/703 atomic regions from SNP 123953 to 124553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,067 DEBUG Processing 262/672 atomic regions from SNP 78348 to 78948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,095 DEBUG Processing 109/659 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,107 DEBUG Processing 714/720 atomic regions from SNP 214091 to 214691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,249 DEBUG Processing 415/703 atomic regions from SNP 124253 to 124853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,272 DEBUG Processing 263/672 atomic regions from SNP 78648 to 79248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,305 DEBUG Processing 110/659 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,337 DEBUG Processing 715/720 atomic regions from SNP 214391 to 214991 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,458 DEBUG Processing 416/703 atomic regions from SNP 124553 to 125153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,493 DEBUG Processing 264/672 atomic regions from SNP 78948 to 79548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,513 DEBUG Processing 111/659 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,560 DEBUG Processing 716/720 atomic regions from SNP 214691 to 215291 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,687 DEBUG Processing 417/703 atomic regions from SNP 124853 to 125453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,723 DEBUG Processing 265/672 atomic regions from SNP 79248 to 79848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,728 DEBUG Processing 112/659 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,790 DEBUG Processing 717/720 atomic regions from SNP 214991 to 215591 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:54,916 DEBUG Processing 418/703 atomic regions from SNP 125153 to 125753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,942 DEBUG Processing 113/659 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,962 DEBUG Processing 266/672 atomic regions from SNP 79548 to 80148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,009 DEBUG Processing 718/720 atomic regions from SNP 215291 to 215891 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,127 DEBUG Processing 419/703 atomic regions from SNP 125453 to 126053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,159 DEBUG Processing 114/659 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,201 DEBUG Processing 267/672 atomic regions from SNP 79848 to 80448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,228 DEBUG Processing 719/720 atomic regions from SNP 215591 to 216191 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,363 DEBUG Processing 420/703 atomic regions from SNP 125753 to 126353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,368 DEBUG Processing 115/659 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,438 DEBUG Processing 268/672 atomic regions from SNP 80148 to 80748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,447 DEBUG Processing 720/720 atomic regions from SNP 215891 to 216491 for chr9 (subchromosome 1 of 1). 2025-01-31 09:56:55,581 DEBUG Processing 116/659 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,596 DEBUG Unique SNPs positions in subchromosome 1: 216492 2025-01-31 09:56:55,606 DEBUG Processing 421/703 atomic regions from SNP 126053 to 126653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,682 DEBUG Processing 269/672 atomic regions from SNP 80448 to 81048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,794 DEBUG Processing 117/659 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,866 DEBUG Processing 422/703 atomic regions from SNP 126353 to 126953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,913 DEBUG Processing 270/672 atomic regions from SNP 80748 to 81348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,010 DEBUG Processing 118/659 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,105 DEBUG Processing 423/703 atomic regions from SNP 126653 to 127253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,130 DEBUG Processing 271/672 atomic regions from SNP 81048 to 81648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,223 DEBUG Processing 119/659 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,335 DEBUG Processing 272/672 atomic regions from SNP 81348 to 81948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,336 DEBUG Processing 424/703 atomic regions from SNP 126953 to 127553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,437 DEBUG Processing 120/659 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,534 DEBUG Processing 273/672 atomic regions from SNP 81648 to 82248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,555 DEBUG Processing 425/703 atomic regions from SNP 127253 to 127853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,650 DEBUG Processing 121/659 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,736 DEBUG Processing 274/672 atomic regions from SNP 81948 to 82548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,775 DEBUG Processing 426/703 atomic regions from SNP 127553 to 128153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,863 DEBUG Processing 122/659 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,938 DEBUG Processing 275/672 atomic regions from SNP 82248 to 82848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,012 DEBUG Processing 427/703 atomic regions from SNP 127853 to 128453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,080 DEBUG Processing 123/659 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,136 DEBUG Processing 276/672 atomic regions from SNP 82548 to 83148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,231 DEBUG Processing 428/703 atomic regions from SNP 128153 to 128753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,286 DEBUG Processing 124/659 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,346 DEBUG Processing 277/672 atomic regions from SNP 82848 to 83448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,441 DEBUG Processing 429/703 atomic regions from SNP 128453 to 129053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,491 DEBUG Processing 125/659 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,545 DEBUG Processing 278/672 atomic regions from SNP 83148 to 83748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,654 DEBUG Processing 430/703 atomic regions from SNP 128753 to 129353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,712 DEBUG Processing 126/659 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,739 DEBUG Processing 279/672 atomic regions from SNP 83448 to 84048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,855 DEBUG Processing 431/703 atomic regions from SNP 129053 to 129653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,943 DEBUG Processing 127/659 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,953 DEBUG Processing 280/672 atomic regions from SNP 83748 to 84348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,054 DEBUG Processing 432/703 atomic regions from SNP 129353 to 129953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,167 DEBUG Processing 128/659 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,178 DEBUG Processing 281/672 atomic regions from SNP 84048 to 84648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,263 DEBUG Processing 433/703 atomic regions from SNP 129653 to 130253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,376 DEBUG Processing 129/659 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,400 DEBUG Processing 282/672 atomic regions from SNP 84348 to 84948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,495 DEBUG Processing 434/703 atomic regions from SNP 129953 to 130553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,591 DEBUG Processing 130/659 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,595 DEBUG Processing 283/672 atomic regions from SNP 84648 to 85248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,712 DEBUG Processing 435/703 atomic regions from SNP 130253 to 130853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,790 DEBUG Processing 284/672 atomic regions from SNP 84948 to 85548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,800 DEBUG Processing 131/659 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,940 DEBUG Processing 436/703 atomic regions from SNP 130553 to 131153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,987 DEBUG Processing 285/672 atomic regions from SNP 85248 to 85848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,014 DEBUG Processing 132/659 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,178 DEBUG Processing 437/703 atomic regions from SNP 130853 to 131453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,189 DEBUG Processing 286/672 atomic regions from SNP 85548 to 86148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,225 DEBUG Processing 133/659 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,399 DEBUG Processing 287/672 atomic regions from SNP 85848 to 86448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,421 DEBUG Processing 438/703 atomic regions from SNP 131153 to 131753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,444 DEBUG Processing 134/659 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,602 DEBUG Processing 288/672 atomic regions from SNP 86148 to 86748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,657 DEBUG Processing 439/703 atomic regions from SNP 131453 to 132053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,660 DEBUG Processing 135/659 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,801 DEBUG Processing 289/672 atomic regions from SNP 86448 to 87048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,871 DEBUG Processing 136/659 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,887 DEBUG Processing 440/703 atomic regions from SNP 131753 to 132353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:59,995 DEBUG Processing 290/672 atomic regions from SNP 86748 to 87348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,082 DEBUG Processing 137/659 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,097 DEBUG Processing 441/703 atomic regions from SNP 132053 to 132653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,192 DEBUG Processing 291/672 atomic regions from SNP 87048 to 87648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,291 DEBUG Processing 138/659 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,310 DEBUG Processing 442/703 atomic regions from SNP 132353 to 132953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,384 DEBUG Processing 292/672 atomic regions from SNP 87348 to 87948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,500 DEBUG Processing 139/659 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,523 DEBUG Processing 443/703 atomic regions from SNP 132653 to 133253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,580 DEBUG Processing 293/672 atomic regions from SNP 87648 to 88248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,702 DEBUG Processing 140/659 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,737 DEBUG Processing 444/703 atomic regions from SNP 132953 to 133553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,776 DEBUG Processing 294/672 atomic regions from SNP 87948 to 88548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,917 DEBUG Processing 141/659 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,945 DEBUG Processing 445/703 atomic regions from SNP 133253 to 133853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:00,975 DEBUG Processing 295/672 atomic regions from SNP 88248 to 88848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,121 DEBUG Processing 142/659 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,149 DEBUG Processing 446/703 atomic regions from SNP 133553 to 134153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,176 DEBUG Processing 296/672 atomic regions from SNP 88548 to 89148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,321 DEBUG Processing 143/659 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,373 DEBUG Processing 447/703 atomic regions from SNP 133853 to 134453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,375 DEBUG Processing 297/672 atomic regions from SNP 88848 to 89448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,530 DEBUG Processing 144/659 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,592 DEBUG Processing 298/672 atomic regions from SNP 89148 to 89748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,602 DEBUG Processing 448/703 atomic regions from SNP 134153 to 134753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,703 DEBUG Segmenting atomic regions: 2025-01-31 09:57:01,744 DEBUG Processing 145/659 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,780 DEBUG Processing 1/594 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,822 DEBUG Processing 299/672 atomic regions from SNP 89448 to 90048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,824 DEBUG Processing 449/703 atomic regions from SNP 134453 to 135053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:01,948 DEBUG Processing 146/659 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,967 DEBUG Processing 2/594 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,043 DEBUG Processing 450/703 atomic regions from SNP 134753 to 135353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,055 DEBUG Processing 300/672 atomic regions from SNP 89748 to 90348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,154 DEBUG Processing 3/594 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,171 DEBUG Processing 147/659 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,257 DEBUG Processing 451/703 atomic regions from SNP 135053 to 135653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,280 DEBUG Processing 301/672 atomic regions from SNP 90048 to 90648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,342 DEBUG Processing 4/594 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,400 DEBUG Processing 148/659 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,472 DEBUG Processing 452/703 atomic regions from SNP 135353 to 135953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,515 DEBUG Processing 302/672 atomic regions from SNP 90348 to 90948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,532 DEBUG Processing 5/594 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,620 DEBUG Processing 149/659 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,680 DEBUG Processing 453/703 atomic regions from SNP 135653 to 136253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,748 DEBUG Processing 6/594 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,754 DEBUG Processing 303/672 atomic regions from SNP 90648 to 91248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,821 DEBUG Processing 150/659 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,886 DEBUG Processing 454/703 atomic regions from SNP 135953 to 136553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:02,941 DEBUG Processing 7/594 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,990 DEBUG Processing 304/672 atomic regions from SNP 90948 to 91548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,021 DEBUG Processing 151/659 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,091 DEBUG Processing 455/703 atomic regions from SNP 136253 to 136853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,131 DEBUG Processing 8/594 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,223 DEBUG Processing 152/659 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,224 DEBUG Processing 305/672 atomic regions from SNP 91248 to 91848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,298 DEBUG Processing 456/703 atomic regions from SNP 136553 to 137153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,323 DEBUG Processing 9/594 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,435 DEBUG Processing 153/659 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,457 DEBUG Processing 306/672 atomic regions from SNP 91548 to 92148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,505 DEBUG Processing 457/703 atomic regions from SNP 136853 to 137453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,513 DEBUG Processing 10/594 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,660 DEBUG Processing 154/659 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,665 DEBUG Processing 307/672 atomic regions from SNP 91848 to 92448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,707 DEBUG Processing 11/594 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,716 DEBUG Processing 458/703 atomic regions from SNP 137153 to 137753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,875 DEBUG Processing 308/672 atomic regions from SNP 92148 to 92748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,890 DEBUG Processing 155/659 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,931 DEBUG Processing 459/703 atomic regions from SNP 137453 to 138053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:03,932 DEBUG Processing 12/594 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,079 DEBUG Processing 309/672 atomic regions from SNP 92448 to 93048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,099 DEBUG Processing 156/659 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,151 DEBUG Processing 460/703 atomic regions from SNP 137753 to 138353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,163 DEBUG Processing 13/594 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,287 DEBUG Processing 310/672 atomic regions from SNP 92748 to 93348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,313 DEBUG Processing 157/659 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,369 DEBUG Processing 461/703 atomic regions from SNP 138053 to 138653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,381 DEBUG Processing 14/594 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,486 DEBUG Processing 311/672 atomic regions from SNP 93048 to 93648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,515 DEBUG Processing 158/659 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,572 DEBUG Processing 462/703 atomic regions from SNP 138353 to 138953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,587 DEBUG Processing 15/594 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,689 DEBUG Processing 312/672 atomic regions from SNP 93348 to 93948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,722 DEBUG Processing 159/659 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,778 DEBUG Processing 463/703 atomic regions from SNP 138653 to 139253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,793 DEBUG Processing 16/594 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,883 DEBUG Processing 313/672 atomic regions from SNP 93648 to 94248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,923 DEBUG Processing 160/659 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,985 DEBUG Processing 464/703 atomic regions from SNP 138953 to 139553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:04,994 DEBUG Processing 17/594 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,080 DEBUG Processing 314/672 atomic regions from SNP 93948 to 94548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,131 DEBUG Processing 161/659 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,199 DEBUG Processing 465/703 atomic regions from SNP 139253 to 139853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,209 DEBUG Processing 18/594 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,278 DEBUG Processing 315/672 atomic regions from SNP 94248 to 94848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,338 DEBUG Processing 162/659 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,408 DEBUG Processing 19/594 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,421 DEBUG Processing 466/703 atomic regions from SNP 139553 to 140153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,479 DEBUG Processing 316/672 atomic regions from SNP 94548 to 95148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,548 DEBUG Processing 163/659 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,609 DEBUG Processing 20/594 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,658 DEBUG Processing 467/703 atomic regions from SNP 139853 to 140453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,677 DEBUG Processing 317/672 atomic regions from SNP 94848 to 95448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,761 DEBUG Processing 164/659 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,822 DEBUG Processing 21/594 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,867 DEBUG Processing 468/703 atomic regions from SNP 140153 to 140753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:05,878 DEBUG Processing 318/672 atomic regions from SNP 95148 to 95748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,974 DEBUG Processing 165/659 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,040 DEBUG Processing 22/594 atomic regions from SNP 6321 to 6921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,076 DEBUG Processing 319/672 atomic regions from SNP 95448 to 96048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,094 DEBUG Processing 469/703 atomic regions from SNP 140453 to 141053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,177 DEBUG Processing 166/659 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,207 DEBUG Subchromosome time: 204.69885183195584, subchromosome SNPs: 216492 2025-01-31 09:57:06,208 DEBUG Estimated BADs: [0.51, 1.52, 0.30, 6.06, 1.52, 0.76, 1.52, 0.30, 1.52, 0.38, 12.13, 1.52, 3.03, 7.58, 1.52, 4.55, 1.52, 3.03, 1.52, 3.03, 0.51, 1.52, 0.76, 0.38, 1.52, 4.55, 0.51, 6.06, 3.03, 0.76, 1.52, 3.03] SNP counts: [16955, 7213, 4818, 3632, 5741, 9900, 3312, 2095, 6320, 5148, 96, 4324, 1850, 1184, 22348, 5530, 2786, 10158, 7588, 5003, 1792, 11389, 16188, 6624, 21430, 1454, 533, 2683, 6577, 2742, 9875, 9204] SNP IDs counts: [16955, 7213, 4818, 3632, 5741, 9900, 3312, 2095, 6320, 5148, 96, 4324, 1850, 1184, 22348, 5530, 2786, 10158, 7588, 5003, 1792, 11389, 16188, 6624, 21430, 1454, 533, 2683, 6577, 2742, 9875, 9204] Critical gap: 599750bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.30Mbp, 17.39Mbp, 20.43Mbp, 22.37Mbp, 25.61Mbp, 31.07Mbp, 32.84Mbp, 34.08Mbp, 37.71Mbp, 40.77Mbp, 40.82Mbp, 43.10Mbp, 44.07Mbp, 44.70Mbp, 56.83Mbp, 59.75Mbp, 61.23Mbp, 66.58Mbp, 70.66Mbp, 73.38Mbp, 74.40Mbp, 80.82Mbp, 90.60Mbp, 94.53Mbp, 106.14Mbp, 106.93Mbp, 107.25Mbp, 108.64Mbp, 112.38Mbp, 113.90Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:57:06,208 DEBUG chr9 time: 204.6993797540199 s 2025-01-31 09:57:06,246 DEBUG Processing 23/594 atomic regions from SNP 6621 to 7221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,275 DEBUG Processing 320/672 atomic regions from SNP 95748 to 96348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,314 DEBUG Processing 470/703 atomic regions from SNP 140753 to 141353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,329 DEBUG chr9: Fitting background model for 32 segments 2025-01-31 09:57:06,384 DEBUG Processing 167/659 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,451 DEBUG Processing 24/594 atomic regions from SNP 6921 to 7521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,506 DEBUG Processing 321/672 atomic regions from SNP 96048 to 96648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,518 DEBUG Processing 471/703 atomic regions from SNP 141053 to 141653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,589 DEBUG Processing 168/659 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,663 DEBUG Processing 25/594 atomic regions from SNP 7221 to 7821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,727 DEBUG Processing 472/703 atomic regions from SNP 141353 to 141953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,746 DEBUG Processing 322/672 atomic regions from SNP 96348 to 96948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,798 DEBUG Processing 169/659 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,870 DEBUG Processing 26/594 atomic regions from SNP 7521 to 8121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,941 DEBUG Processing 473/703 atomic regions from SNP 141653 to 142253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:06,987 DEBUG Processing 323/672 atomic regions from SNP 96648 to 97248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,007 DEBUG Processing 170/659 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,074 DEBUG Processing 27/594 atomic regions from SNP 7821 to 8421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,168 DEBUG Processing 474/703 atomic regions from SNP 141953 to 142553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,215 DEBUG Processing 171/659 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,222 DEBUG Processing 324/672 atomic regions from SNP 96948 to 97548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,284 DEBUG Processing 28/594 atomic regions from SNP 8121 to 8721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,389 DEBUG Processing 475/703 atomic regions from SNP 142253 to 142853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,425 DEBUG Processing 172/659 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,438 DEBUG Processing 325/672 atomic regions from SNP 97248 to 97848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,510 DEBUG Processing 29/594 atomic regions from SNP 8421 to 9021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,608 DEBUG Processing 476/703 atomic regions from SNP 142553 to 143153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,630 DEBUG Processing 173/659 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,671 DEBUG Processing 326/672 atomic regions from SNP 97548 to 98148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,737 DEBUG Processing 30/594 atomic regions from SNP 8721 to 9321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,837 DEBUG Processing 174/659 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,839 DEBUG Processing 477/703 atomic regions from SNP 142853 to 143453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:07,893 DEBUG Processing 327/672 atomic regions from SNP 97848 to 98448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,972 DEBUG Processing 31/594 atomic regions from SNP 9021 to 9621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,044 DEBUG Processing 175/659 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,086 DEBUG Processing 478/703 atomic regions from SNP 143153 to 143753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,102 DEBUG Processing 328/672 atomic regions from SNP 98148 to 98748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,211 DEBUG Processing 32/594 atomic regions from SNP 9321 to 9921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,247 DEBUG Processing 176/659 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,316 DEBUG Processing 329/672 atomic regions from SNP 98448 to 99048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,339 DEBUG Processing 479/703 atomic regions from SNP 143453 to 144053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,444 DEBUG Processing 33/594 atomic regions from SNP 9621 to 10221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,457 DEBUG Processing 177/659 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,536 DEBUG Processing 330/672 atomic regions from SNP 98748 to 99348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,563 DEBUG Processing 480/703 atomic regions from SNP 143753 to 144353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,676 DEBUG Processing 34/594 atomic regions from SNP 9921 to 10521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,679 DEBUG Processing 178/659 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,775 DEBUG Processing 331/672 atomic regions from SNP 99048 to 99648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:08,799 DEBUG Processing 481/703 atomic regions from SNP 144053 to 144653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:08,896 DEBUG Processing 179/659 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,906 DEBUG Processing 35/594 atomic regions from SNP 10221 to 10821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,019 DEBUG Processing 332/672 atomic regions from SNP 99348 to 99948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,040 DEBUG Processing 482/703 atomic regions from SNP 144353 to 144953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,106 DEBUG Processing 180/659 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,133 DEBUG Processing 36/594 atomic regions from SNP 10521 to 11121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,230 DEBUG Processing 333/672 atomic regions from SNP 99648 to 100248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,259 DEBUG Processing 483/703 atomic regions from SNP 144653 to 145253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,317 DEBUG Processing 181/659 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,356 DEBUG Processing 37/594 atomic regions from SNP 10821 to 11421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,444 DEBUG Processing 334/672 atomic regions from SNP 99948 to 100548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,487 DEBUG Processing 484/703 atomic regions from SNP 144953 to 145553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,531 DEBUG Processing 182/659 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,589 DEBUG Processing 38/594 atomic regions from SNP 11121 to 11721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,672 DEBUG Processing 335/672 atomic regions from SNP 100248 to 100848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,739 DEBUG Processing 485/703 atomic regions from SNP 145253 to 145853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,744 DEBUG Processing 183/659 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,816 DEBUG Processing 39/594 atomic regions from SNP 11421 to 12021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,893 DEBUG Processing 336/672 atomic regions from SNP 100548 to 101148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:09,954 DEBUG Processing 486/703 atomic regions from SNP 145553 to 146153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:09,954 DEBUG Processing 184/659 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,021 DEBUG Processing 40/594 atomic regions from SNP 11721 to 12321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,096 DEBUG Processing 337/672 atomic regions from SNP 100848 to 101448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,157 DEBUG Processing 185/659 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,163 DEBUG Processing 487/703 atomic regions from SNP 145853 to 146453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,217 DEBUG Processing 41/594 atomic regions from SNP 12021 to 12621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,299 DEBUG Processing 338/672 atomic regions from SNP 101148 to 101748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,360 DEBUG Processing 186/659 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,375 DEBUG Processing 488/703 atomic regions from SNP 146153 to 146753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,421 DEBUG Processing 42/594 atomic regions from SNP 12321 to 12921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,508 DEBUG Processing 339/672 atomic regions from SNP 101448 to 102048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,575 DEBUG Processing 187/659 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,601 DEBUG Processing 489/703 atomic regions from SNP 146453 to 147053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,639 DEBUG Processing 43/594 atomic regions from SNP 12621 to 13221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,715 DEBUG Processing 340/672 atomic regions from SNP 101748 to 102348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,780 DEBUG Processing 188/659 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,824 DEBUG Processing 490/703 atomic regions from SNP 146753 to 147353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:10,868 DEBUG Processing 44/594 atomic regions from SNP 12921 to 13521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,924 DEBUG Processing 341/672 atomic regions from SNP 102048 to 102648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:10,985 DEBUG Processing 189/659 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,045 DEBUG Processing 491/703 atomic regions from SNP 147053 to 147653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,099 DEBUG Processing 45/594 atomic regions from SNP 13221 to 13821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,140 DEBUG Processing 342/672 atomic regions from SNP 102348 to 102948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,187 DEBUG Processing 190/659 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,276 DEBUG Processing 492/703 atomic regions from SNP 147353 to 147953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,321 DEBUG Processing 46/594 atomic regions from SNP 13521 to 14121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,352 DEBUG Processing 343/672 atomic regions from SNP 102648 to 103248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,390 DEBUG Processing 191/659 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,492 DEBUG Processing 493/703 atomic regions from SNP 147653 to 148253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,550 DEBUG Processing 47/594 atomic regions from SNP 13821 to 14421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,563 DEBUG Processing 344/672 atomic regions from SNP 102948 to 103548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,594 DEBUG Processing 192/659 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,722 DEBUG Processing 494/703 atomic regions from SNP 147953 to 148553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,776 DEBUG Processing 48/594 atomic regions from SNP 14121 to 14721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,784 DEBUG Processing 345/672 atomic regions from SNP 103248 to 103848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:11,807 DEBUG Processing 193/659 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,966 DEBUG Processing 495/703 atomic regions from SNP 148253 to 148853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:11,997 DEBUG Processing 346/672 atomic regions from SNP 103548 to 104148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,006 DEBUG Processing 49/594 atomic regions from SNP 14421 to 15021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,014 DEBUG Processing 194/659 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,210 DEBUG Processing 347/672 atomic regions from SNP 103848 to 104448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,216 DEBUG Processing 195/659 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,219 DEBUG Processing 496/703 atomic regions from SNP 148553 to 149153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,233 DEBUG Processing 50/594 atomic regions from SNP 14721 to 15321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,421 DEBUG Processing 196/659 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,447 DEBUG Processing 348/672 atomic regions from SNP 104148 to 104748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,457 DEBUG Processing 51/594 atomic regions from SNP 15021 to 15621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,467 DEBUG Processing 497/703 atomic regions from SNP 148853 to 149453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,622 DEBUG Processing 197/659 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,677 DEBUG Processing 52/594 atomic regions from SNP 15321 to 15921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,678 DEBUG Processing 349/672 atomic regions from SNP 104448 to 105048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,709 DEBUG Processing 498/703 atomic regions from SNP 149153 to 149753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:12,820 DEBUG Processing 198/659 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,907 DEBUG Processing 53/594 atomic regions from SNP 15621 to 16221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,911 DEBUG Processing 350/672 atomic regions from SNP 104748 to 105348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:12,954 DEBUG Processing 499/703 atomic regions from SNP 149453 to 150053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,019 DEBUG Processing 199/659 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,139 DEBUG Processing 54/594 atomic regions from SNP 15921 to 16521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,144 DEBUG Processing 351/672 atomic regions from SNP 105048 to 105648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,184 DEBUG Processing 500/703 atomic regions from SNP 149753 to 150353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,222 DEBUG Processing 200/659 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,368 DEBUG Processing 352/672 atomic regions from SNP 105348 to 105948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,372 DEBUG Processing 55/594 atomic regions from SNP 16221 to 16821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,401 DEBUG Processing 501/703 atomic regions from SNP 150053 to 150653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,423 DEBUG Processing 201/659 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,601 DEBUG Processing 353/672 atomic regions from SNP 105648 to 106248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,608 DEBUG Processing 56/594 atomic regions from SNP 16521 to 17121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,621 DEBUG Processing 202/659 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,621 DEBUG Processing 502/703 atomic regions from SNP 150353 to 150953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:13,822 DEBUG Processing 203/659 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,836 DEBUG Processing 354/672 atomic regions from SNP 105948 to 106548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:13,843 DEBUG Processing 57/594 atomic regions from SNP 16821 to 17421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,851 DEBUG Processing 503/703 atomic regions from SNP 150653 to 151253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,024 DEBUG Processing 204/659 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,079 DEBUG Processing 355/672 atomic regions from SNP 106248 to 106848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,080 DEBUG Processing 58/594 atomic regions from SNP 17121 to 17721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,087 DEBUG Processing 504/703 atomic regions from SNP 150953 to 151553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,222 DEBUG Processing 205/659 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,319 DEBUG Processing 59/594 atomic regions from SNP 17421 to 18021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,325 DEBUG Processing 505/703 atomic regions from SNP 151253 to 151853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,325 DEBUG Processing 356/672 atomic regions from SNP 106548 to 107148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,421 DEBUG Processing 206/659 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,547 DEBUG Processing 506/703 atomic regions from SNP 151553 to 152153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,547 DEBUG Processing 60/594 atomic regions from SNP 17721 to 18321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,552 DEBUG Processing 357/672 atomic regions from SNP 106848 to 107448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,622 DEBUG Processing 207/659 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,768 DEBUG Processing 507/703 atomic regions from SNP 151853 to 152453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:14,769 DEBUG Processing 358/672 atomic regions from SNP 107148 to 107748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,782 DEBUG Processing 61/594 atomic regions from SNP 18021 to 18621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,822 DEBUG Processing 208/659 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,983 DEBUG Processing 359/672 atomic regions from SNP 107448 to 108048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:14,987 DEBUG Processing 508/703 atomic regions from SNP 152153 to 152753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,003 DEBUG Processing 62/594 atomic regions from SNP 18321 to 18921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,030 DEBUG Processing 209/659 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,198 DEBUG Processing 360/672 atomic regions from SNP 107748 to 108348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,210 DEBUG Processing 63/594 atomic regions from SNP 18621 to 19221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,221 DEBUG Processing 509/703 atomic regions from SNP 152453 to 153053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,234 DEBUG Processing 210/659 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,421 DEBUG Processing 361/672 atomic regions from SNP 108048 to 108648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,422 DEBUG Processing 64/594 atomic regions from SNP 18921 to 19521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,438 DEBUG Processing 211/659 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,455 DEBUG Processing 510/703 atomic regions from SNP 152753 to 153353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,633 DEBUG Processing 65/594 atomic regions from SNP 19221 to 19821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,639 DEBUG Processing 212/659 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,647 DEBUG Processing 362/672 atomic regions from SNP 108348 to 108948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,681 DEBUG Processing 511/703 atomic regions from SNP 153053 to 153653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:15,838 DEBUG Processing 213/659 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,848 DEBUG Processing 66/594 atomic regions from SNP 19521 to 20121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,870 DEBUG Processing 363/672 atomic regions from SNP 108648 to 109248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:15,909 DEBUG Processing 512/703 atomic regions from SNP 153353 to 153953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,035 DEBUG Processing 214/659 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,059 DEBUG Processing 67/594 atomic regions from SNP 19821 to 20421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,095 DEBUG Processing 364/672 atomic regions from SNP 108948 to 109548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,140 DEBUG Processing 513/703 atomic regions from SNP 153653 to 154253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,228 DEBUG Processing 215/659 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,265 DEBUG Processing 68/594 atomic regions from SNP 20121 to 20721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,316 DEBUG Processing 365/672 atomic regions from SNP 109248 to 109848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,363 DEBUG Processing 514/703 atomic regions from SNP 153953 to 154553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,426 DEBUG Processing 216/659 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,467 DEBUG Processing 69/594 atomic regions from SNP 20421 to 21021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,535 DEBUG Processing 366/672 atomic regions from SNP 109548 to 110148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,586 DEBUG Processing 515/703 atomic regions from SNP 154253 to 154853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,626 DEBUG Processing 217/659 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,670 DEBUG Processing 70/594 atomic regions from SNP 20721 to 21321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,754 DEBUG Processing 367/672 atomic regions from SNP 109848 to 110448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:16,814 DEBUG Processing 516/703 atomic regions from SNP 154553 to 155153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:16,827 DEBUG Processing 218/659 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,876 DEBUG Processing 71/594 atomic regions from SNP 21021 to 21621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,971 DEBUG Processing 368/672 atomic regions from SNP 110148 to 110748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,030 DEBUG Processing 219/659 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,043 DEBUG Processing 517/703 atomic regions from SNP 154853 to 155453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,081 DEBUG Processing 72/594 atomic regions from SNP 21321 to 21921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,184 DEBUG Processing 369/672 atomic regions from SNP 110448 to 111048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,229 DEBUG Processing 220/659 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,271 DEBUG Processing 518/703 atomic regions from SNP 155153 to 155753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,285 DEBUG Processing 73/594 atomic regions from SNP 21621 to 22221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,397 DEBUG Processing 370/672 atomic regions from SNP 110748 to 111348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,425 DEBUG Processing 221/659 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,487 DEBUG Processing 74/594 atomic regions from SNP 21921 to 22521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,493 DEBUG Processing 519/703 atomic regions from SNP 155453 to 156053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,605 DEBUG Processing 371/672 atomic regions from SNP 111048 to 111648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,620 DEBUG Processing 222/659 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,696 DEBUG Processing 75/594 atomic regions from SNP 22221 to 22821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,720 DEBUG Processing 520/703 atomic regions from SNP 155753 to 156353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:17,815 DEBUG Processing 223/659 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,818 DEBUG Processing 372/672 atomic regions from SNP 111348 to 111948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:17,899 DEBUG Processing 76/594 atomic regions from SNP 22521 to 23121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,940 DEBUG Processing 521/703 atomic regions from SNP 156053 to 156653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,011 DEBUG Processing 224/659 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,021 DEBUG Processing 373/672 atomic regions from SNP 111648 to 112248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,096 DEBUG Processing 77/594 atomic regions from SNP 22821 to 23421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,156 DEBUG Processing 522/703 atomic regions from SNP 156353 to 156953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,207 DEBUG Processing 225/659 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,230 DEBUG Processing 374/672 atomic regions from SNP 111948 to 112548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,298 DEBUG Processing 78/594 atomic regions from SNP 23121 to 23721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,367 DEBUG Processing 523/703 atomic regions from SNP 156653 to 157253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,414 DEBUG Processing 226/659 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,452 DEBUG Processing 375/672 atomic regions from SNP 112248 to 112848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,512 DEBUG Processing 79/594 atomic regions from SNP 23421 to 24021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,577 DEBUG Processing 524/703 atomic regions from SNP 156953 to 157553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,613 DEBUG Processing 227/659 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,685 DEBUG Processing 376/672 atomic regions from SNP 112548 to 113148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:18,702 DEBUG Processing 80/594 atomic regions from SNP 23721 to 24321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,788 DEBUG Processing 525/703 atomic regions from SNP 157253 to 157853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:18,821 DEBUG Processing 228/659 atomic regions from SNP 68327 to 68928 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,893 DEBUG Processing 81/594 atomic regions from SNP 24021 to 24621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,907 DEBUG Processing 377/672 atomic regions from SNP 112848 to 113448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,002 DEBUG Processing 526/703 atomic regions from SNP 157553 to 158153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,019 DEBUG Processing 229/659 atomic regions from SNP 68628 to 69229 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,084 DEBUG Processing 82/594 atomic regions from SNP 24321 to 24921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,107 DEBUG Processing 378/672 atomic regions from SNP 113148 to 113748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,214 DEBUG Processing 230/659 atomic regions from SNP 68929 to 69530 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,215 DEBUG Processing 527/703 atomic regions from SNP 157853 to 158453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,279 DEBUG Processing 83/594 atomic regions from SNP 24621 to 25221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,323 DEBUG Processing 379/672 atomic regions from SNP 113448 to 114048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,408 DEBUG Processing 231/659 atomic regions from SNP 69230 to 69831 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,427 DEBUG Processing 528/703 atomic regions from SNP 158153 to 158753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,469 DEBUG Processing 84/594 atomic regions from SNP 24921 to 25521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,528 DEBUG Processing 380/672 atomic regions from SNP 113748 to 114348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,604 DEBUG Processing 232/659 atomic regions from SNP 69531 to 70132 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,639 DEBUG Processing 529/703 atomic regions from SNP 158453 to 159053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,664 DEBUG Processing 85/594 atomic regions from SNP 25221 to 25821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,733 DEBUG Processing 381/672 atomic regions from SNP 114048 to 114648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:19,806 DEBUG Processing 233/659 atomic regions from SNP 69832 to 70433 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,858 DEBUG Processing 530/703 atomic regions from SNP 158753 to 159353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:19,869 DEBUG Processing 86/594 atomic regions from SNP 25521 to 26121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,947 DEBUG Processing 382/672 atomic regions from SNP 114348 to 114948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,015 DEBUG Processing 234/659 atomic regions from SNP 70133 to 70734 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,070 DEBUG Processing 87/594 atomic regions from SNP 25821 to 26421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,073 DEBUG Processing 531/703 atomic regions from SNP 159053 to 159653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,148 DEBUG Processing 383/672 atomic regions from SNP 114648 to 115248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,226 DEBUG Processing 235/659 atomic regions from SNP 70434 to 71035 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,264 DEBUG Processing 88/594 atomic regions from SNP 26121 to 26721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,284 DEBUG Processing 532/703 atomic regions from SNP 159353 to 159953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,349 DEBUG Processing 384/672 atomic regions from SNP 114948 to 115548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,436 DEBUG Processing 236/659 atomic regions from SNP 70735 to 71336 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,456 DEBUG Processing 89/594 atomic regions from SNP 26421 to 27021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,505 DEBUG Processing 533/703 atomic regions from SNP 159653 to 160253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,550 DEBUG Processing 385/672 atomic regions from SNP 115248 to 115848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,637 DEBUG Processing 237/659 atomic regions from SNP 71036 to 71637 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,648 DEBUG Processing 90/594 atomic regions from SNP 26721 to 27321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,728 DEBUG Processing 534/703 atomic regions from SNP 159953 to 160553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:20,754 DEBUG Processing 386/672 atomic regions from SNP 115548 to 116148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,835 DEBUG Processing 238/659 atomic regions from SNP 71337 to 71938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,837 DEBUG Processing 91/594 atomic regions from SNP 27021 to 27621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,957 DEBUG Processing 387/672 atomic regions from SNP 115848 to 116448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:20,964 DEBUG Processing 535/703 atomic regions from SNP 160253 to 160853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,030 DEBUG Processing 92/594 atomic regions from SNP 27321 to 27921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,031 DEBUG Processing 239/659 atomic regions from SNP 71638 to 72239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,160 DEBUG Processing 388/672 atomic regions from SNP 116148 to 116748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,200 DEBUG Processing 536/703 atomic regions from SNP 160553 to 161153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,222 DEBUG Processing 93/594 atomic regions from SNP 27621 to 28221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,231 DEBUG Processing 240/659 atomic regions from SNP 71939 to 72540 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,374 DEBUG Processing 389/672 atomic regions from SNP 116448 to 117048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,417 DEBUG Processing 94/594 atomic regions from SNP 27921 to 28521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,433 DEBUG Processing 241/659 atomic regions from SNP 72240 to 72841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,433 DEBUG Processing 537/703 atomic regions from SNP 160853 to 161453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,584 DEBUG Processing 390/672 atomic regions from SNP 116748 to 117348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,607 DEBUG Processing 95/594 atomic regions from SNP 28221 to 28821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,629 DEBUG Processing 242/659 atomic regions from SNP 72541 to 73142 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,645 DEBUG Processing 538/703 atomic regions from SNP 161153 to 161753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,784 DEBUG Processing 391/672 atomic regions from SNP 117048 to 117648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:21,798 DEBUG Processing 96/594 atomic regions from SNP 28521 to 29121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,828 DEBUG Processing 243/659 atomic regions from SNP 72842 to 73443 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,867 DEBUG Processing 539/703 atomic regions from SNP 161453 to 162053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:21,990 DEBUG Processing 97/594 atomic regions from SNP 28821 to 29421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,003 DEBUG Processing 392/672 atomic regions from SNP 117348 to 117948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,029 DEBUG Processing 244/659 atomic regions from SNP 73143 to 73744 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,104 DEBUG Processing 540/703 atomic regions from SNP 161753 to 162353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,177 DEBUG Processing 98/594 atomic regions from SNP 29121 to 29721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,226 DEBUG Processing 245/659 atomic regions from SNP 73444 to 74045 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,230 DEBUG Processing 393/672 atomic regions from SNP 117648 to 118248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,327 DEBUG Processing 541/703 atomic regions from SNP 162053 to 162653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,361 DEBUG Processing 99/594 atomic regions from SNP 29421 to 30021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,423 DEBUG Processing 246/659 atomic regions from SNP 73745 to 74346 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,440 DEBUG Processing 394/672 atomic regions from SNP 117948 to 118548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,547 DEBUG Processing 100/594 atomic regions from SNP 29721 to 30321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,554 DEBUG Processing 542/703 atomic regions from SNP 162353 to 162953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,616 DEBUG Processing 247/659 atomic regions from SNP 74046 to 74647 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,640 DEBUG Processing 395/672 atomic regions from SNP 118248 to 118848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,737 DEBUG Processing 101/594 atomic regions from SNP 30021 to 30621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,776 DEBUG Processing 543/703 atomic regions from SNP 162653 to 163253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:22,811 DEBUG Processing 248/659 atomic regions from SNP 74347 to 74948 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,838 DEBUG Processing 396/672 atomic regions from SNP 118548 to 119148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:22,926 DEBUG Processing 102/594 atomic regions from SNP 30321 to 30921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,006 DEBUG Processing 544/703 atomic regions from SNP 162953 to 163553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,008 DEBUG Processing 249/659 atomic regions from SNP 74648 to 75249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,036 DEBUG Processing 397/672 atomic regions from SNP 118848 to 119448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,112 DEBUG Processing 103/594 atomic regions from SNP 30621 to 31221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,200 DEBUG Processing 250/659 atomic regions from SNP 74949 to 75550 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,237 DEBUG Processing 545/703 atomic regions from SNP 163253 to 163853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,261 DEBUG Processing 398/672 atomic regions from SNP 119148 to 119748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,304 DEBUG Processing 104/594 atomic regions from SNP 30921 to 31521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,326 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:57:23,391 DEBUG Processing 251/659 atomic regions from SNP 75250 to 75851 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,481 DEBUG Processing 546/703 atomic regions from SNP 163553 to 164153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,498 DEBUG Processing 105/594 atomic regions from SNP 31221 to 31821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,501 DEBUG Processing 399/672 atomic regions from SNP 119448 to 120048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,586 DEBUG Processing 252/659 atomic regions from SNP 75551 to 76152 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,690 DEBUG Processing 106/594 atomic regions from SNP 31521 to 32121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,706 DEBUG Processing 547/703 atomic regions from SNP 163853 to 164453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,736 DEBUG Processing 400/672 atomic regions from SNP 119748 to 120348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,780 DEBUG Processing 253/659 atomic regions from SNP 75852 to 76453 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,881 DEBUG Processing 107/594 atomic regions from SNP 31821 to 32421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,915 DEBUG Processing 548/703 atomic regions from SNP 164153 to 164753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:23,966 DEBUG Processing 401/672 atomic regions from SNP 120048 to 120648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:23,978 DEBUG Processing 254/659 atomic regions from SNP 76153 to 76754 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,073 DEBUG Processing 108/594 atomic regions from SNP 32121 to 32721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,124 DEBUG Processing 549/703 atomic regions from SNP 164453 to 165053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,181 DEBUG Processing 255/659 atomic regions from SNP 76454 to 77055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,194 DEBUG Processing 402/672 atomic regions from SNP 120348 to 120948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,262 DEBUG Processing 109/594 atomic regions from SNP 32421 to 33021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,330 DEBUG Processing 550/703 atomic regions from SNP 164753 to 165353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,375 DEBUG Processing 256/659 atomic regions from SNP 76755 to 77356 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,416 DEBUG Processing 403/672 atomic regions from SNP 120648 to 121248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,449 DEBUG Processing 110/594 atomic regions from SNP 32721 to 33321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,557 DEBUG Processing 551/703 atomic regions from SNP 165053 to 165653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,576 DEBUG Processing 257/659 atomic regions from SNP 77056 to 77657 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,638 DEBUG Processing 111/594 atomic regions from SNP 33021 to 33621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,649 DEBUG Processing 404/672 atomic regions from SNP 120948 to 121548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:24,793 DEBUG Processing 258/659 atomic regions from SNP 77357 to 77958 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,795 DEBUG Processing 552/703 atomic regions from SNP 165353 to 165953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:24,829 DEBUG Processing 112/594 atomic regions from SNP 33321 to 33921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,862 DEBUG Processing 405/672 atomic regions from SNP 121248 to 121848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,019 DEBUG Processing 259/659 atomic regions from SNP 77658 to 78259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,023 DEBUG Processing 113/594 atomic regions from SNP 33621 to 34221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,038 DEBUG Processing 553/703 atomic regions from SNP 165653 to 166253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,073 DEBUG Processing 406/672 atomic regions from SNP 121548 to 122148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,217 DEBUG Processing 114/594 atomic regions from SNP 33921 to 34521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,242 DEBUG Processing 260/659 atomic regions from SNP 77959 to 78560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,283 DEBUG Processing 554/703 atomic regions from SNP 165953 to 166553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,298 DEBUG Processing 407/672 atomic regions from SNP 121848 to 122448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,406 DEBUG Processing 115/594 atomic regions from SNP 34221 to 34821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,447 DEBUG Processing 261/659 atomic regions from SNP 78260 to 78861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,501 DEBUG Processing 408/672 atomic regions from SNP 122148 to 122748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,527 DEBUG Processing 555/703 atomic regions from SNP 166253 to 166853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,593 DEBUG Processing 116/594 atomic regions from SNP 34521 to 35121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,648 DEBUG Processing 262/659 atomic regions from SNP 78561 to 79162 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,711 DEBUG Processing 409/672 atomic regions from SNP 122448 to 123048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,776 DEBUG Processing 556/703 atomic regions from SNP 166553 to 167153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:25,792 DEBUG Processing 117/594 atomic regions from SNP 34821 to 35421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,849 DEBUG Processing 263/659 atomic regions from SNP 78862 to 79463 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,913 DEBUG Processing 410/672 atomic regions from SNP 122748 to 123348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:25,986 DEBUG Processing 118/594 atomic regions from SNP 35121 to 35721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,022 DEBUG Processing 557/703 atomic regions from SNP 166853 to 167453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,059 DEBUG Processing 264/659 atomic regions from SNP 79163 to 79764 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,115 DEBUG Processing 411/672 atomic regions from SNP 123048 to 123648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,179 DEBUG Processing 119/594 atomic regions from SNP 35421 to 36021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,254 DEBUG Processing 265/659 atomic regions from SNP 79464 to 80065 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,261 DEBUG Processing 558/703 atomic regions from SNP 167153 to 167753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,312 DEBUG Processing 412/672 atomic regions from SNP 123348 to 123948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,370 DEBUG Processing 120/594 atomic regions from SNP 35721 to 36321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,454 DEBUG Processing 266/659 atomic regions from SNP 79765 to 80366 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,505 DEBUG Processing 559/703 atomic regions from SNP 167453 to 168053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,543 DEBUG Processing 413/672 atomic regions from SNP 123648 to 124248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,565 DEBUG Processing 121/594 atomic regions from SNP 36021 to 36621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,644 DEBUG Processing 267/659 atomic regions from SNP 80066 to 80667 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,752 DEBUG Processing 560/703 atomic regions from SNP 167753 to 168353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:26,762 DEBUG Processing 414/672 atomic regions from SNP 123948 to 124548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,767 DEBUG Processing 122/594 atomic regions from SNP 36321 to 36921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,839 DEBUG Processing 268/659 atomic regions from SNP 80367 to 80968 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,963 DEBUG Processing 123/594 atomic regions from SNP 36621 to 37221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,971 DEBUG Processing 415/672 atomic regions from SNP 124248 to 124848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:26,990 DEBUG Processing 561/703 atomic regions from SNP 168053 to 168653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,032 DEBUG Processing 269/659 atomic regions from SNP 80668 to 81269 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,161 DEBUG Processing 124/594 atomic regions from SNP 36921 to 37521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,177 DEBUG Processing 416/672 atomic regions from SNP 124548 to 125148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,224 DEBUG Processing 270/659 atomic regions from SNP 80969 to 81570 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,227 DEBUG Processing 562/703 atomic regions from SNP 168353 to 168953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,352 DEBUG Processing 125/594 atomic regions from SNP 37221 to 37821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,380 DEBUG Processing 417/672 atomic regions from SNP 124848 to 125448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,417 DEBUG Processing 271/659 atomic regions from SNP 81270 to 81871 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,467 DEBUG Processing 563/703 atomic regions from SNP 168653 to 169253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,544 DEBUG Processing 126/594 atomic regions from SNP 37521 to 38121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,581 DEBUG Processing 418/672 atomic regions from SNP 125148 to 125748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,611 DEBUG Processing 272/659 atomic regions from SNP 81571 to 82172 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,709 DEBUG Processing 564/703 atomic regions from SNP 168953 to 169553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,736 DEBUG Processing 127/594 atomic regions from SNP 37821 to 38421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,793 DEBUG Processing 419/672 atomic regions from SNP 125448 to 126048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:27,814 DEBUG Processing 273/659 atomic regions from SNP 81872 to 82473 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,931 DEBUG Processing 128/594 atomic regions from SNP 38121 to 38721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,941 DEBUG Processing 565/703 atomic regions from SNP 169253 to 169853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:27,999 DEBUG Processing 420/672 atomic regions from SNP 125748 to 126348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,032 DEBUG Processing 274/659 atomic regions from SNP 82173 to 82774 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,127 DEBUG Processing 129/594 atomic regions from SNP 38421 to 39021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,154 DEBUG Processing 566/703 atomic regions from SNP 169553 to 170153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,207 DEBUG Processing 421/672 atomic regions from SNP 126048 to 126648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,230 DEBUG Processing 275/659 atomic regions from SNP 82474 to 83075 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,324 DEBUG Processing 130/594 atomic regions from SNP 38721 to 39321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,367 DEBUG Processing 567/703 atomic regions from SNP 169853 to 170453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,413 DEBUG Processing 422/672 atomic regions from SNP 126348 to 126948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,433 DEBUG Processing 276/659 atomic regions from SNP 82775 to 83376 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,514 DEBUG Processing 131/594 atomic regions from SNP 39021 to 39621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,577 DEBUG Processing 568/703 atomic regions from SNP 170153 to 170753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,616 DEBUG Processing 423/672 atomic regions from SNP 126648 to 127248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,672 DEBUG Processing 277/659 atomic regions from SNP 83076 to 83677 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,706 DEBUG Processing 132/594 atomic regions from SNP 39321 to 39921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,796 DEBUG Processing 569/703 atomic regions from SNP 170453 to 171053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:28,830 DEBUG Processing 424/672 atomic regions from SNP 126948 to 127548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:28,904 DEBUG Processing 133/594 atomic regions from SNP 39621 to 40221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,918 DEBUG Processing 278/659 atomic regions from SNP 83377 to 83978 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,012 DEBUG Processing 570/703 atomic regions from SNP 170753 to 171353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,036 DEBUG Processing 425/672 atomic regions from SNP 127248 to 127848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,125 DEBUG Processing 134/594 atomic regions from SNP 39921 to 40521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,150 DEBUG Processing 279/659 atomic regions from SNP 83678 to 84279 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,220 DEBUG Processing 571/703 atomic regions from SNP 171053 to 171653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,241 DEBUG Processing 426/672 atomic regions from SNP 127548 to 128148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,316 DEBUG Processing 135/594 atomic regions from SNP 40221 to 40821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,370 DEBUG Processing 280/659 atomic regions from SNP 83979 to 84580 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,449 DEBUG Processing 572/703 atomic regions from SNP 171353 to 171953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,474 DEBUG Processing 427/672 atomic regions from SNP 127848 to 128448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,506 DEBUG Processing 136/594 atomic regions from SNP 40521 to 41121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,587 DEBUG Processing 281/659 atomic regions from SNP 84280 to 84881 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,689 DEBUG Processing 573/703 atomic regions from SNP 171653 to 172253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:29,689 DEBUG Processing 428/672 atomic regions from SNP 128148 to 128748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,700 DEBUG Processing 137/594 atomic regions from SNP 40821 to 41421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,796 DEBUG Processing 282/659 atomic regions from SNP 84581 to 85182 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,897 DEBUG Processing 429/672 atomic regions from SNP 128448 to 129048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:29,897 DEBUG Processing 138/594 atomic regions from SNP 41121 to 41721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,931 DEBUG Processing 574/703 atomic regions from SNP 171953 to 172553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,001 DEBUG Processing 283/659 atomic regions from SNP 84882 to 85483 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,093 DEBUG Processing 139/594 atomic regions from SNP 41421 to 42021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,105 DEBUG Processing 430/672 atomic regions from SNP 128748 to 129348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,172 DEBUG Processing 575/703 atomic regions from SNP 172253 to 172853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,197 DEBUG Processing 284/659 atomic regions from SNP 85183 to 85784 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,285 DEBUG Processing 140/594 atomic regions from SNP 41721 to 42321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,313 DEBUG Processing 431/672 atomic regions from SNP 129048 to 129648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,393 DEBUG Processing 576/703 atomic regions from SNP 172553 to 173153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,396 DEBUG Processing 285/659 atomic regions from SNP 85484 to 86085 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,478 DEBUG Processing 141/594 atomic regions from SNP 42021 to 42621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,518 DEBUG Processing 432/672 atomic regions from SNP 129348 to 129948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,591 DEBUG Processing 286/659 atomic regions from SNP 85785 to 86386 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,627 DEBUG Processing 577/703 atomic regions from SNP 172853 to 173453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,674 DEBUG Processing 142/594 atomic regions from SNP 42321 to 42921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,719 DEBUG Processing 433/672 atomic regions from SNP 129648 to 130248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,785 DEBUG Processing 287/659 atomic regions from SNP 86086 to 86687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,864 DEBUG Processing 578/703 atomic regions from SNP 173153 to 173753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:30,891 DEBUG Processing 143/594 atomic regions from SNP 42621 to 43221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,923 DEBUG Processing 434/672 atomic regions from SNP 129948 to 130548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:30,987 DEBUG Processing 288/659 atomic regions from SNP 86387 to 86987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,081 DEBUG Processing 144/594 atomic regions from SNP 42921 to 43521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,100 DEBUG Processing 579/703 atomic regions from SNP 173453 to 174053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,123 DEBUG Processing 435/672 atomic regions from SNP 130248 to 130848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,183 DEBUG Processing 289/659 atomic regions from SNP 86687 to 87287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,268 DEBUG Processing 145/594 atomic regions from SNP 43221 to 43821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,325 DEBUG Processing 436/672 atomic regions from SNP 130548 to 131148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,336 DEBUG Processing 580/703 atomic regions from SNP 173753 to 174353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,379 DEBUG Processing 290/659 atomic regions from SNP 86987 to 87587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,458 DEBUG Processing 146/594 atomic regions from SNP 43521 to 44121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,532 DEBUG Processing 437/672 atomic regions from SNP 130848 to 131448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,569 DEBUG Processing 581/703 atomic regions from SNP 174053 to 174653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,572 DEBUG Processing 291/659 atomic regions from SNP 87287 to 87887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,644 DEBUG Processing 147/594 atomic regions from SNP 43821 to 44421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,739 DEBUG Processing 438/672 atomic regions from SNP 131148 to 131748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,775 DEBUG Processing 292/659 atomic regions from SNP 87587 to 88187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,788 DEBUG Processing 582/703 atomic regions from SNP 174353 to 174953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:31,833 DEBUG Processing 148/594 atomic regions from SNP 44121 to 44721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,942 DEBUG Processing 439/672 atomic regions from SNP 131448 to 132048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:31,974 DEBUG Processing 293/659 atomic regions from SNP 87887 to 88487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,025 DEBUG Processing 149/594 atomic regions from SNP 44421 to 45021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,031 DEBUG Processing 583/703 atomic regions from SNP 174653 to 175253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,144 DEBUG Processing 440/672 atomic regions from SNP 131748 to 132348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,175 DEBUG Processing 294/659 atomic regions from SNP 88187 to 88787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,218 DEBUG Processing 150/594 atomic regions from SNP 44721 to 45321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,278 DEBUG Processing 584/703 atomic regions from SNP 174953 to 175553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,346 DEBUG Processing 441/672 atomic regions from SNP 132048 to 132648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,373 DEBUG Processing 295/659 atomic regions from SNP 88487 to 89087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,406 DEBUG Processing 151/594 atomic regions from SNP 45021 to 45621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,515 DEBUG Processing 585/703 atomic regions from SNP 175253 to 175853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,569 DEBUG Processing 296/659 atomic regions from SNP 88787 to 89387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,572 DEBUG Processing 442/672 atomic regions from SNP 132348 to 132948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,597 DEBUG Processing 152/594 atomic regions from SNP 45321 to 45921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,746 DEBUG Processing 586/703 atomic regions from SNP 175553 to 176153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,773 DEBUG Processing 297/659 atomic regions from SNP 89087 to 89687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,791 DEBUG Processing 153/594 atomic regions from SNP 45621 to 46221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,796 DEBUG Processing 443/672 atomic regions from SNP 132648 to 133248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:32,961 DEBUG Processing 587/703 atomic regions from SNP 175853 to 176453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:32,973 DEBUG Processing 298/659 atomic regions from SNP 89387 to 89987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,987 DEBUG Processing 154/594 atomic regions from SNP 45921 to 46521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,000 DEBUG Processing 444/672 atomic regions from SNP 132948 to 133548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,175 DEBUG Processing 299/659 atomic regions from SNP 89687 to 90287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,183 DEBUG Processing 588/703 atomic regions from SNP 176153 to 176753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,184 DEBUG Processing 155/594 atomic regions from SNP 46221 to 46821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,206 DEBUG Processing 445/672 atomic regions from SNP 133248 to 133848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,374 DEBUG Processing 300/659 atomic regions from SNP 89987 to 90587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,380 DEBUG Processing 156/594 atomic regions from SNP 46521 to 47121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,420 DEBUG Processing 446/672 atomic regions from SNP 133548 to 134148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,421 DEBUG Processing 589/703 atomic regions from SNP 176453 to 177053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,573 DEBUG Processing 157/594 atomic regions from SNP 46821 to 47421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,590 DEBUG Processing 301/659 atomic regions from SNP 90287 to 90887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,655 DEBUG Processing 447/672 atomic regions from SNP 133848 to 134448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,666 DEBUG Processing 590/703 atomic regions from SNP 176753 to 177353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,765 DEBUG Processing 158/594 atomic regions from SNP 47121 to 47721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,824 DEBUG Processing 302/659 atomic regions from SNP 90587 to 91187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,892 DEBUG Processing 448/672 atomic regions from SNP 134148 to 134748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:33,898 DEBUG Processing 591/703 atomic regions from SNP 177053 to 177653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:33,956 DEBUG Processing 159/594 atomic regions from SNP 47421 to 48021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,031 DEBUG Processing 303/659 atomic regions from SNP 90887 to 91487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,100 DEBUG Processing 449/672 atomic regions from SNP 134448 to 135048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,109 DEBUG Processing 592/703 atomic regions from SNP 177353 to 177953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,148 DEBUG Processing 160/594 atomic regions from SNP 47721 to 48321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,233 DEBUG Processing 304/659 atomic regions from SNP 91187 to 91787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,307 DEBUG Processing 450/672 atomic regions from SNP 134748 to 135348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,322 DEBUG Processing 593/703 atomic regions from SNP 177653 to 178253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,344 DEBUG Processing 161/594 atomic regions from SNP 48021 to 48621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,437 DEBUG Processing 305/659 atomic regions from SNP 91487 to 92087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,514 DEBUG Processing 451/672 atomic regions from SNP 135048 to 135648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,540 DEBUG Processing 162/594 atomic regions from SNP 48321 to 48921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,542 DEBUG Processing 594/703 atomic regions from SNP 177953 to 178553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,613 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:57:34,615 DEBUG chr16: Signal quantile: 0.989. signal threshold: 12. Best RMSEA: 0.012 2025-01-31 09:57:34,641 DEBUG Processing 306/659 atomic regions from SNP 91787 to 92387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,723 DEBUG Processing 452/672 atomic regions from SNP 135348 to 135948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,737 DEBUG Processing 163/594 atomic regions from SNP 48621 to 49221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,755 DEBUG Processing 595/703 atomic regions from SNP 178253 to 178853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:34,841 DEBUG Processing 307/659 atomic regions from SNP 92087 to 92687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,928 DEBUG Processing 453/672 atomic regions from SNP 135648 to 136248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:34,931 DEBUG Processing 164/594 atomic regions from SNP 48921 to 49521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,968 DEBUG Processing 596/703 atomic regions from SNP 178553 to 179153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,039 DEBUG Processing 308/659 atomic regions from SNP 92387 to 92987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,122 DEBUG Processing 165/594 atomic regions from SNP 49221 to 49821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,131 DEBUG Processing 454/672 atomic regions from SNP 135948 to 136548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,183 DEBUG Processing 597/703 atomic regions from SNP 178853 to 179453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,236 DEBUG Processing 309/659 atomic regions from SNP 92687 to 93287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,320 DEBUG Processing 166/594 atomic regions from SNP 49521 to 50121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,334 DEBUG Processing 455/672 atomic regions from SNP 136248 to 136848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,395 DEBUG Processing 598/703 atomic regions from SNP 179153 to 179753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,435 DEBUG Processing 310/659 atomic regions from SNP 92987 to 93587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,531 DEBUG Processing 167/594 atomic regions from SNP 49821 to 50421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,541 DEBUG Processing 456/672 atomic regions from SNP 136548 to 137148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,610 DEBUG Processing 599/703 atomic regions from SNP 179453 to 180053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,636 DEBUG Processing 311/659 atomic regions from SNP 93287 to 93887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,728 DEBUG Processing 168/594 atomic regions from SNP 50121 to 50721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,747 DEBUG Processing 457/672 atomic regions from SNP 136848 to 137448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:35,819 DEBUG Processing 600/703 atomic regions from SNP 179753 to 180353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:35,836 DEBUG Processing 312/659 atomic regions from SNP 93587 to 94187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,917 DEBUG Processing 169/594 atomic regions from SNP 50421 to 51021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,972 DEBUG Processing 458/672 atomic regions from SNP 137148 to 137748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,025 DEBUG Processing 601/703 atomic regions from SNP 180053 to 180653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,031 DEBUG Processing 313/659 atomic regions from SNP 93887 to 94487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,104 DEBUG Processing 170/594 atomic regions from SNP 50721 to 51321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,204 DEBUG Processing 459/672 atomic regions from SNP 137448 to 138048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,234 DEBUG Processing 314/659 atomic regions from SNP 94187 to 94787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,251 DEBUG Processing 602/703 atomic regions from SNP 180353 to 180953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,267 DEBUG chr16 total SNP count: 167869 2025-01-31 09:57:36,267 DEBUG chr16 length: 98207768 2025-01-31 09:57:36,267 DEBUG ----------------------------------------- 2025-01-31 09:57:36,267 INFO Processing SNPs in chr16 2025-01-31 09:57:36,297 DEBUG Processing 171/594 atomic regions from SNP 51021 to 51621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,419 DEBUG Processing 460/672 atomic regions from SNP 137748 to 138348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,430 DEBUG Processing 315/659 atomic regions from SNP 94487 to 95087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,433 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 167869)] 2025-01-31 09:57:36,483 DEBUG Processing 603/703 atomic regions from SNP 180653 to 181253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,488 DEBUG Processing 172/594 atomic regions from SNP 51321 to 51921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,549 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:36,616 DEBUG Processing 461/672 atomic regions from SNP 138048 to 138648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,627 DEBUG Processing 316/659 atomic regions from SNP 94787 to 95387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,679 DEBUG Processing 173/594 atomic regions from SNP 51621 to 52221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,723 DEBUG Processing 604/703 atomic regions from SNP 180953 to 181553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:36,811 DEBUG Processing 462/672 atomic regions from SNP 138348 to 138948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:36,823 DEBUG Processing 317/659 atomic regions from SNP 95087 to 95687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,869 DEBUG Processing 174/594 atomic regions from SNP 51921 to 52521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,932 DEBUG Processing 605/703 atomic regions from SNP 181253 to 181853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,012 DEBUG Processing 463/672 atomic regions from SNP 138648 to 139248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,023 DEBUG Processing 318/659 atomic regions from SNP 95387 to 95987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,058 DEBUG Processing 175/594 atomic regions from SNP 52221 to 52821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,139 DEBUG Processing 606/703 atomic regions from SNP 181553 to 182153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,214 DEBUG Processing 464/672 atomic regions from SNP 138948 to 139548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,224 DEBUG Processing 319/659 atomic regions from SNP 95687 to 96287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,254 DEBUG Processing 176/594 atomic regions from SNP 52521 to 53121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,364 DEBUG Processing 607/703 atomic regions from SNP 181853 to 182453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,418 DEBUG Processing 465/672 atomic regions from SNP 139248 to 139848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,427 DEBUG Processing 320/659 atomic regions from SNP 95987 to 96587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,447 DEBUG Processing 177/594 atomic regions from SNP 52821 to 53421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,597 DEBUG Processing 608/703 atomic regions from SNP 182153 to 182753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:37,622 DEBUG Processing 466/672 atomic regions from SNP 139548 to 140148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,623 DEBUG Processing 321/659 atomic regions from SNP 96287 to 96887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,639 DEBUG Processing 178/594 atomic regions from SNP 53121 to 53721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,831 DEBUG Processing 467/672 atomic regions from SNP 139848 to 140448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:37,832 DEBUG Processing 322/659 atomic regions from SNP 96587 to 97187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,834 DEBUG Processing 179/594 atomic regions from SNP 53421 to 54021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,840 DEBUG Processing 609/703 atomic regions from SNP 182453 to 183053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,031 DEBUG Processing 323/659 atomic regions from SNP 96887 to 97487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,031 DEBUG Processing 180/594 atomic regions from SNP 53721 to 54321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,038 DEBUG Processing 468/672 atomic regions from SNP 140148 to 140748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,071 DEBUG Processing 610/703 atomic regions from SNP 182753 to 183353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,223 DEBUG Processing 181/594 atomic regions from SNP 54021 to 54621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,226 DEBUG Processing 324/659 atomic regions from SNP 97187 to 97787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,241 DEBUG Processing 469/672 atomic regions from SNP 140448 to 141048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,303 DEBUG Processing 611/703 atomic regions from SNP 183053 to 183653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,414 DEBUG Processing 182/594 atomic regions from SNP 54321 to 54921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,422 DEBUG Processing 325/659 atomic regions from SNP 97487 to 98087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,444 DEBUG Processing 470/672 atomic regions from SNP 140748 to 141348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,530 DEBUG Processing 612/703 atomic regions from SNP 183353 to 183953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,604 DEBUG Processing 183/594 atomic regions from SNP 54621 to 55221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,617 DEBUG Processing 326/659 atomic regions from SNP 97787 to 98387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,645 DEBUG Processing 471/672 atomic regions from SNP 141048 to 141648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,749 DEBUG Processing 613/703 atomic regions from SNP 183653 to 184253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,796 DEBUG Processing 184/594 atomic regions from SNP 54921 to 55521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,814 DEBUG Processing 327/659 atomic regions from SNP 98087 to 98687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,845 DEBUG Processing 472/672 atomic regions from SNP 141348 to 141948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:38,979 DEBUG Processing 614/703 atomic regions from SNP 183953 to 184553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:38,986 DEBUG Processing 185/594 atomic regions from SNP 55221 to 55821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,018 DEBUG Processing 328/659 atomic regions from SNP 98387 to 98987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,047 DEBUG Processing 473/672 atomic regions from SNP 141648 to 142248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,174 DEBUG Processing 186/594 atomic regions from SNP 55521 to 56121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,191 DEBUG Processing 615/703 atomic regions from SNP 184253 to 184853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,218 DEBUG Processing 329/659 atomic regions from SNP 98687 to 99287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,252 DEBUG Processing 474/672 atomic regions from SNP 141948 to 142548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,361 DEBUG Processing 187/594 atomic regions from SNP 55821 to 56421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,416 DEBUG Processing 616/703 atomic regions from SNP 184553 to 185153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,420 DEBUG Processing 330/659 atomic regions from SNP 98987 to 99587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,455 DEBUG Processing 475/672 atomic regions from SNP 142248 to 142848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,572 DEBUG Processing 188/594 atomic regions from SNP 56121 to 56721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,621 DEBUG Processing 331/659 atomic regions from SNP 99287 to 99887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,642 DEBUG Processing 617/703 atomic regions from SNP 184853 to 185453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,655 DEBUG Processing 476/672 atomic regions from SNP 142548 to 143148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,755 DEBUG Processing 189/594 atomic regions from SNP 56421 to 57021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,820 DEBUG Processing 332/659 atomic regions from SNP 99587 to 100187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,848 DEBUG Processing 618/703 atomic regions from SNP 185153 to 185753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:39,856 DEBUG Processing 477/672 atomic regions from SNP 142848 to 143448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:39,937 DEBUG Processing 190/594 atomic regions from SNP 56721 to 57321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,016 DEBUG Processing 333/659 atomic regions from SNP 99887 to 100487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,054 DEBUG Processing 619/703 atomic regions from SNP 185453 to 186053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,057 DEBUG Processing 478/672 atomic regions from SNP 143148 to 143748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,120 DEBUG Processing 191/594 atomic regions from SNP 57021 to 57621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,211 DEBUG Processing 334/659 atomic regions from SNP 100187 to 100787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,259 DEBUG Processing 620/703 atomic regions from SNP 185753 to 186353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,260 DEBUG Processing 479/672 atomic regions from SNP 143448 to 144048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,307 DEBUG Processing 192/594 atomic regions from SNP 57321 to 57921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,420 DEBUG Processing 335/659 atomic regions from SNP 100487 to 101087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,463 DEBUG Processing 480/672 atomic regions from SNP 143748 to 144348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,478 DEBUG Processing 621/703 atomic regions from SNP 186053 to 186653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,503 DEBUG Processing 193/594 atomic regions from SNP 57621 to 58221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,622 DEBUG Processing 336/659 atomic regions from SNP 100787 to 101387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,666 DEBUG Processing 481/672 atomic regions from SNP 144048 to 144648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,704 DEBUG Processing 622/703 atomic regions from SNP 186353 to 186953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,711 DEBUG Processing 194/594 atomic regions from SNP 57921 to 58521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,813 DEBUG Processing 337/659 atomic regions from SNP 101087 to 101687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,866 DEBUG Processing 482/672 atomic regions from SNP 144348 to 144948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:40,908 DEBUG Processing 623/703 atomic regions from SNP 186653 to 187253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:40,921 DEBUG Processing 195/594 atomic regions from SNP 58221 to 58821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,013 DEBUG Processing 338/659 atomic regions from SNP 101387 to 101987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,067 DEBUG Processing 483/672 atomic regions from SNP 144648 to 145248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,120 DEBUG Processing 624/703 atomic regions from SNP 186953 to 187553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,142 DEBUG Processing 196/594 atomic regions from SNP 58521 to 59121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,217 DEBUG Processing 339/659 atomic regions from SNP 101687 to 102287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,269 DEBUG Processing 484/672 atomic regions from SNP 144948 to 145548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,333 DEBUG Processing 625/703 atomic regions from SNP 187253 to 187853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,360 DEBUG Processing 197/594 atomic regions from SNP 58821 to 59421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,417 DEBUG Processing 340/659 atomic regions from SNP 101987 to 102587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,468 DEBUG Processing 485/672 atomic regions from SNP 145248 to 145848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,539 DEBUG Processing 626/703 atomic regions from SNP 187553 to 188153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,550 DEBUG Processing 198/594 atomic regions from SNP 59121 to 59721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,616 DEBUG Processing 341/659 atomic regions from SNP 102287 to 102887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,668 DEBUG Processing 486/672 atomic regions from SNP 145548 to 146148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,735 DEBUG Processing 199/594 atomic regions from SNP 59421 to 60021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,744 DEBUG Processing 627/703 atomic regions from SNP 187853 to 188453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:41,813 DEBUG Processing 342/659 atomic regions from SNP 102587 to 103187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,863 DEBUG Processing 487/672 atomic regions from SNP 145848 to 146448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:41,920 DEBUG Processing 200/594 atomic regions from SNP 59721 to 60321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,961 DEBUG Processing 628/703 atomic regions from SNP 188153 to 188753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,023 DEBUG Processing 343/659 atomic regions from SNP 102887 to 103487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,056 DEBUG Processing 488/672 atomic regions from SNP 146148 to 146748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,105 DEBUG Processing 201/594 atomic regions from SNP 60021 to 60621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,194 DEBUG Processing 629/703 atomic regions from SNP 188453 to 189053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,223 DEBUG Processing 344/659 atomic regions from SNP 103187 to 103787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,264 DEBUG Processing 489/672 atomic regions from SNP 146448 to 147048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,294 DEBUG Processing 202/594 atomic regions from SNP 60321 to 60921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,416 DEBUG Processing 630/703 atomic regions from SNP 188753 to 189353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,418 DEBUG Processing 345/659 atomic regions from SNP 103487 to 104087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,462 DEBUG Processing 490/672 atomic regions from SNP 146748 to 147348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,479 DEBUG Processing 203/594 atomic regions from SNP 60621 to 61221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,617 DEBUG Processing 346/659 atomic regions from SNP 103787 to 104387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,619 DEBUG Processing 631/703 atomic regions from SNP 189053 to 189653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,663 DEBUG Processing 491/672 atomic regions from SNP 147048 to 147648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:42,669 DEBUG Processing 204/594 atomic regions from SNP 60921 to 61521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,817 DEBUG Processing 347/659 atomic regions from SNP 104087 to 104687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,825 DEBUG Processing 632/703 atomic regions from SNP 189353 to 189953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:42,861 DEBUG Processing 205/594 atomic regions from SNP 61221 to 61821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,867 DEBUG Processing 492/672 atomic regions from SNP 147348 to 147948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,018 DEBUG Processing 348/659 atomic regions from SNP 104387 to 104987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,029 DEBUG Processing 633/703 atomic regions from SNP 189653 to 190253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,067 DEBUG Processing 493/672 atomic regions from SNP 147648 to 148248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,078 DEBUG Processing 206/594 atomic regions from SNP 61521 to 62121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,224 DEBUG Processing 349/659 atomic regions from SNP 104687 to 105287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,247 DEBUG Processing 634/703 atomic regions from SNP 189953 to 190553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,266 DEBUG Processing 494/672 atomic regions from SNP 147948 to 148548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,293 DEBUG Processing 207/594 atomic regions from SNP 61821 to 62421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,424 DEBUG Processing 350/659 atomic regions from SNP 104987 to 105587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,454 DEBUG Processing 635/703 atomic regions from SNP 190253 to 190853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,466 DEBUG Processing 495/672 atomic regions from SNP 148248 to 148848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,502 DEBUG Processing 208/594 atomic regions from SNP 62121 to 62721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,623 DEBUG Processing 351/659 atomic regions from SNP 105287 to 105887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,658 DEBUG Processing 636/703 atomic regions from SNP 190553 to 191153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,662 DEBUG Processing 496/672 atomic regions from SNP 148548 to 149148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,686 DEBUG Processing 209/594 atomic regions from SNP 62421 to 63021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,817 DEBUG Processing 352/659 atomic regions from SNP 105587 to 106187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,860 DEBUG Processing 497/672 atomic regions from SNP 148848 to 149448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:43,864 DEBUG Processing 637/703 atomic regions from SNP 190853 to 191453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:43,869 DEBUG Processing 210/594 atomic regions from SNP 62721 to 63321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,010 DEBUG Processing 353/659 atomic regions from SNP 105887 to 106487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,056 DEBUG Processing 211/594 atomic regions from SNP 63021 to 63621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,057 DEBUG Processing 498/672 atomic regions from SNP 149148 to 149748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,071 DEBUG Processing 638/703 atomic regions from SNP 191153 to 191753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,208 DEBUG Processing 354/659 atomic regions from SNP 106187 to 106787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,242 DEBUG Processing 212/594 atomic regions from SNP 63321 to 63921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,273 DEBUG Processing 499/672 atomic regions from SNP 149448 to 150048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,276 DEBUG Processing 639/703 atomic regions from SNP 191453 to 192053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,407 DEBUG Processing 355/659 atomic regions from SNP 106487 to 107087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,425 DEBUG Processing 213/594 atomic regions from SNP 63621 to 64221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,480 DEBUG Processing 640/703 atomic regions from SNP 191753 to 192353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,492 DEBUG Processing 500/672 atomic regions from SNP 149748 to 150348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,600 DEBUG Processing 356/659 atomic regions from SNP 106787 to 107387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,605 DEBUG Processing 214/594 atomic regions from SNP 63921 to 64521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,685 DEBUG Processing 641/703 atomic regions from SNP 192053 to 192653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,701 DEBUG Processing 501/672 atomic regions from SNP 150048 to 150648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,784 DEBUG Processing 215/594 atomic regions from SNP 64221 to 64821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,794 DEBUG Processing 357/659 atomic regions from SNP 107087 to 107687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,889 DEBUG Processing 642/703 atomic regions from SNP 192353 to 192953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:44,914 DEBUG Processing 502/672 atomic regions from SNP 150348 to 150948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:44,964 DEBUG Processing 216/594 atomic regions from SNP 64521 to 65121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,016 DEBUG Processing 358/659 atomic regions from SNP 107387 to 107987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,093 DEBUG Processing 643/703 atomic regions from SNP 192653 to 193253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,122 DEBUG Processing 503/672 atomic regions from SNP 150648 to 151248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,145 DEBUG Processing 217/594 atomic regions from SNP 64821 to 65421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,246 DEBUG Processing 359/659 atomic regions from SNP 107687 to 108287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,297 DEBUG Processing 644/703 atomic regions from SNP 192953 to 193553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,321 DEBUG Processing 504/672 atomic regions from SNP 150948 to 151548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,328 DEBUG Processing 218/594 atomic regions from SNP 65121 to 65721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,460 DEBUG Processing 360/659 atomic regions from SNP 107987 to 108587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,501 DEBUG Processing 645/703 atomic regions from SNP 193253 to 193853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,512 DEBUG Processing 219/594 atomic regions from SNP 65421 to 66021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,517 DEBUG Processing 505/672 atomic regions from SNP 151248 to 151848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,672 DEBUG Processing 361/659 atomic regions from SNP 108287 to 108887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,698 DEBUG Processing 220/594 atomic regions from SNP 65721 to 66321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,708 DEBUG Processing 646/703 atomic regions from SNP 193553 to 194153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:45,715 DEBUG Processing 506/672 atomic regions from SNP 151548 to 152148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,884 DEBUG Processing 221/594 atomic regions from SNP 66021 to 66621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,896 DEBUG Processing 362/659 atomic regions from SNP 108587 to 109187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,911 DEBUG Processing 507/672 atomic regions from SNP 151848 to 152448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:45,913 DEBUG Processing 647/703 atomic regions from SNP 193853 to 194453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,071 DEBUG Processing 222/594 atomic regions from SNP 66321 to 66921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,107 DEBUG Processing 363/659 atomic regions from SNP 108887 to 109487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,115 DEBUG Processing 648/703 atomic regions from SNP 194153 to 194753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,118 DEBUG Processing 508/672 atomic regions from SNP 152148 to 152748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,255 DEBUG Processing 223/594 atomic regions from SNP 66621 to 67221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,313 DEBUG Processing 364/659 atomic regions from SNP 109187 to 109787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,317 DEBUG Processing 649/703 atomic regions from SNP 194453 to 195053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,326 DEBUG Processing 509/672 atomic regions from SNP 152448 to 153048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,438 DEBUG Processing 224/594 atomic regions from SNP 66921 to 67521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,512 DEBUG Processing 365/659 atomic regions from SNP 109487 to 110087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,519 DEBUG Processing 650/703 atomic regions from SNP 194753 to 195353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,549 DEBUG Processing 510/672 atomic regions from SNP 152748 to 153348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,621 DEBUG Processing 225/594 atomic regions from SNP 67221 to 67821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,708 DEBUG Processing 366/659 atomic regions from SNP 109787 to 110387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,719 DEBUG Processing 651/703 atomic regions from SNP 195053 to 195653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,764 DEBUG Processing 511/672 atomic regions from SNP 153048 to 153648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,801 DEBUG Processing 226/594 atomic regions from SNP 67521 to 68121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,901 DEBUG Processing 367/659 atomic regions from SNP 110087 to 110687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,919 DEBUG Processing 652/703 atomic regions from SNP 195353 to 195953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:46,965 DEBUG Processing 512/672 atomic regions from SNP 153348 to 153948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:46,984 DEBUG Processing 227/594 atomic regions from SNP 67821 to 68421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,095 DEBUG Processing 368/659 atomic regions from SNP 110387 to 110987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,117 DEBUG Processing 653/703 atomic regions from SNP 195653 to 196253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,158 DEBUG Processing 513/672 atomic regions from SNP 153648 to 154248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,165 DEBUG Processing 228/594 atomic regions from SNP 68121 to 68721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,306 DEBUG Processing 369/659 atomic regions from SNP 110687 to 111287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,317 DEBUG Processing 654/703 atomic regions from SNP 195953 to 196553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,350 DEBUG Processing 229/594 atomic regions from SNP 68421 to 69021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,379 DEBUG Processing 514/672 atomic regions from SNP 153948 to 154548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,523 DEBUG Processing 655/703 atomic regions from SNP 196253 to 196853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,528 DEBUG Processing 370/659 atomic regions from SNP 110987 to 111587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,538 DEBUG Processing 230/594 atomic regions from SNP 68721 to 69321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,604 DEBUG Processing 515/672 atomic regions from SNP 154248 to 154848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,726 DEBUG Processing 231/594 atomic regions from SNP 69021 to 69621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,728 DEBUG Processing 371/659 atomic regions from SNP 111287 to 111887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,729 DEBUG Processing 656/703 atomic regions from SNP 196553 to 197153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:47,810 DEBUG Processing 516/672 atomic regions from SNP 154548 to 155148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:47,909 DEBUG Processing 232/594 atomic regions from SNP 69321 to 69921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,923 DEBUG Processing 372/659 atomic regions from SNP 111587 to 112187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,930 DEBUG Processing 657/703 atomic regions from SNP 196853 to 197453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,001 DEBUG Processing 517/672 atomic regions from SNP 154848 to 155448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,091 DEBUG Processing 233/594 atomic regions from SNP 69621 to 70221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,120 DEBUG Processing 373/659 atomic regions from SNP 111887 to 112487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,127 DEBUG Processing 658/703 atomic regions from SNP 197153 to 197753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,194 DEBUG Processing 518/672 atomic regions from SNP 155148 to 155748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,271 DEBUG Processing 234/594 atomic regions from SNP 69921 to 70521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,313 DEBUG Processing 374/659 atomic regions from SNP 112187 to 112787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,325 DEBUG Processing 659/703 atomic regions from SNP 197453 to 198053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,388 DEBUG Processing 519/672 atomic regions from SNP 155448 to 156048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,452 DEBUG Processing 235/594 atomic regions from SNP 70221 to 70821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,524 DEBUG Processing 660/703 atomic regions from SNP 197753 to 198353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,525 DEBUG Processing 375/659 atomic regions from SNP 112487 to 113087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,589 DEBUG Processing 520/672 atomic regions from SNP 155748 to 156348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,632 DEBUG Processing 236/594 atomic regions from SNP 70521 to 71121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,723 DEBUG Processing 661/703 atomic regions from SNP 198053 to 198653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,748 DEBUG Processing 376/659 atomic regions from SNP 112787 to 113387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,791 DEBUG Processing 521/672 atomic regions from SNP 156048 to 156648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,810 DEBUG Processing 237/594 atomic regions from SNP 70821 to 71421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,925 DEBUG Processing 662/703 atomic regions from SNP 198353 to 198953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:48,963 DEBUG Processing 377/659 atomic regions from SNP 113087 to 113687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,989 DEBUG Processing 522/672 atomic regions from SNP 156348 to 156948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:48,991 DEBUG Processing 238/594 atomic regions from SNP 71121 to 71721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,154 DEBUG Processing 663/703 atomic regions from SNP 198653 to 199253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,159 DEBUG Processing 378/659 atomic regions from SNP 113387 to 113987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,175 DEBUG Processing 239/594 atomic regions from SNP 71421 to 72021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,189 DEBUG Processing 523/672 atomic regions from SNP 156648 to 157248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,356 DEBUG Processing 379/659 atomic regions from SNP 113687 to 114287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,358 DEBUG Processing 240/594 atomic regions from SNP 71721 to 72321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,388 DEBUG Processing 524/672 atomic regions from SNP 156948 to 157548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,388 DEBUG Processing 664/703 atomic regions from SNP 198953 to 199553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,542 DEBUG Processing 241/594 atomic regions from SNP 72021 to 72621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,565 DEBUG Processing 380/659 atomic regions from SNP 113987 to 114587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,587 DEBUG Processing 525/672 atomic regions from SNP 157248 to 157848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,622 DEBUG Processing 665/703 atomic regions from SNP 199253 to 199853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,724 DEBUG Processing 242/594 atomic regions from SNP 72321 to 72921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,757 DEBUG Processing 381/659 atomic regions from SNP 114287 to 114887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,780 DEBUG Processing 526/672 atomic regions from SNP 157548 to 158148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:49,849 DEBUG Processing 666/703 atomic regions from SNP 199553 to 200153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:49,905 DEBUG Processing 243/594 atomic regions from SNP 72621 to 73221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,952 DEBUG Processing 382/659 atomic regions from SNP 114587 to 115187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,981 DEBUG Processing 527/672 atomic regions from SNP 157848 to 158448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,083 DEBUG Processing 667/703 atomic regions from SNP 199853 to 200453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,087 DEBUG Processing 244/594 atomic regions from SNP 72921 to 73521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,149 DEBUG Processing 383/659 atomic regions from SNP 114887 to 115487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,202 DEBUG Processing 528/672 atomic regions from SNP 158148 to 158748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,270 DEBUG Processing 245/594 atomic regions from SNP 73221 to 73821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,317 DEBUG Processing 668/703 atomic regions from SNP 200153 to 200753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,356 DEBUG Processing 384/659 atomic regions from SNP 115187 to 115787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,422 DEBUG Processing 529/672 atomic regions from SNP 158448 to 159048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,453 DEBUG Processing 246/594 atomic regions from SNP 73521 to 74121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,548 DEBUG Processing 669/703 atomic regions from SNP 200453 to 201053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,563 DEBUG Processing 385/659 atomic regions from SNP 115487 to 116087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,618 DEBUG Processing 530/672 atomic regions from SNP 158748 to 159348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,635 DEBUG Processing 247/594 atomic regions from SNP 73821 to 74421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,756 DEBUG Processing 386/659 atomic regions from SNP 115787 to 116387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,776 DEBUG Processing 670/703 atomic regions from SNP 200753 to 201353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:50,820 DEBUG Processing 531/672 atomic regions from SNP 159048 to 159648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:50,822 DEBUG Processing 248/594 atomic regions from SNP 74121 to 74721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,951 DEBUG Processing 387/659 atomic regions from SNP 116087 to 116687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,014 DEBUG Processing 249/594 atomic regions from SNP 74421 to 75021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,014 DEBUG Processing 671/703 atomic regions from SNP 201053 to 201653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,020 DEBUG Processing 532/672 atomic regions from SNP 159348 to 159948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,163 DEBUG Processing 388/659 atomic regions from SNP 116387 to 116987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,205 DEBUG Processing 250/594 atomic regions from SNP 74721 to 75321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,220 DEBUG Processing 533/672 atomic regions from SNP 159648 to 160248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,252 DEBUG Processing 672/703 atomic regions from SNP 201353 to 201953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,360 DEBUG Processing 389/659 atomic regions from SNP 116687 to 117287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,395 DEBUG Processing 251/594 atomic regions from SNP 75021 to 75621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,422 DEBUG Processing 534/672 atomic regions from SNP 159948 to 160548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,487 DEBUG Processing 673/703 atomic regions from SNP 201653 to 202253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,554 DEBUG Processing 390/659 atomic regions from SNP 116987 to 117587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,584 DEBUG Processing 252/594 atomic regions from SNP 75321 to 75921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,621 DEBUG Processing 535/672 atomic regions from SNP 160248 to 160848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,713 DEBUG Processing 674/703 atomic regions from SNP 201953 to 202553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,750 DEBUG Processing 391/659 atomic regions from SNP 117287 to 117887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,771 DEBUG Processing 253/594 atomic regions from SNP 75621 to 76221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,819 DEBUG Processing 536/672 atomic regions from SNP 160548 to 161148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:51,943 DEBUG Processing 675/703 atomic regions from SNP 202253 to 202853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:51,950 DEBUG Processing 392/659 atomic regions from SNP 117587 to 118187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:51,963 DEBUG Processing 254/594 atomic regions from SNP 75921 to 76521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,049 DEBUG Processing 537/672 atomic regions from SNP 160848 to 161448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,147 DEBUG Processing 393/659 atomic regions from SNP 117887 to 118487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,150 DEBUG Processing 255/594 atomic regions from SNP 76221 to 76821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,175 DEBUG Processing 676/703 atomic regions from SNP 202553 to 203153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,287 DEBUG Processing 538/672 atomic regions from SNP 161148 to 161748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,336 DEBUG Processing 256/594 atomic regions from SNP 76521 to 77121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,343 DEBUG Processing 394/659 atomic regions from SNP 118187 to 118787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,404 DEBUG Processing 677/703 atomic regions from SNP 202853 to 203453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,504 DEBUG Processing 539/672 atomic regions from SNP 161448 to 162048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,519 DEBUG Processing 257/594 atomic regions from SNP 76821 to 77421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,536 DEBUG Processing 395/659 atomic regions from SNP 118487 to 119087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,607 DEBUG Processing 678/703 atomic regions from SNP 203153 to 203753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,703 DEBUG Processing 258/594 atomic regions from SNP 77121 to 77721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,716 DEBUG Processing 540/672 atomic regions from SNP 161748 to 162348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,728 DEBUG Processing 396/659 atomic regions from SNP 118787 to 119387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:52,836 DEBUG Processing 679/703 atomic regions from SNP 203453 to 204053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:52,886 DEBUG Processing 259/594 atomic regions from SNP 77421 to 78021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,912 DEBUG Processing 541/672 atomic regions from SNP 162048 to 162648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:52,923 DEBUG Processing 397/659 atomic regions from SNP 119087 to 119687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,067 DEBUG Processing 680/703 atomic regions from SNP 203753 to 204353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,071 DEBUG Processing 260/594 atomic regions from SNP 77721 to 78321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,108 DEBUG Processing 542/672 atomic regions from SNP 162348 to 162948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,138 DEBUG Processing 398/659 atomic regions from SNP 119387 to 119987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,256 DEBUG Processing 261/594 atomic regions from SNP 78021 to 78621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,291 DEBUG Processing 681/703 atomic regions from SNP 204053 to 204653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,332 DEBUG Processing 543/672 atomic regions from SNP 162648 to 163248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,347 DEBUG Processing 399/659 atomic regions from SNP 119687 to 120287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,441 DEBUG Processing 262/594 atomic regions from SNP 78321 to 78921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,510 DEBUG Processing 682/703 atomic regions from SNP 204353 to 204953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,540 DEBUG Processing 400/659 atomic regions from SNP 119987 to 120587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,559 DEBUG Processing 544/672 atomic regions from SNP 162948 to 163548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,621 DEBUG Processing 263/594 atomic regions from SNP 78621 to 79221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,738 DEBUG Processing 683/703 atomic regions from SNP 204653 to 205253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,746 DEBUG Processing 401/659 atomic regions from SNP 120287 to 120887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,782 DEBUG Processing 545/672 atomic regions from SNP 163248 to 163848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,802 DEBUG Processing 264/594 atomic regions from SNP 78921 to 79521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,959 DEBUG Processing 684/703 atomic regions from SNP 204953 to 205553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:53,970 DEBUG Processing 402/659 atomic regions from SNP 120587 to 121187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:53,981 DEBUG Processing 546/672 atomic regions from SNP 163548 to 164148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:53,986 DEBUG Processing 265/594 atomic regions from SNP 79221 to 79821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,162 DEBUG Processing 685/703 atomic regions from SNP 205253 to 205853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,169 DEBUG Processing 266/594 atomic regions from SNP 79521 to 80121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,178 DEBUG Processing 547/672 atomic regions from SNP 163848 to 164448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,197 DEBUG Processing 403/659 atomic regions from SNP 120887 to 121487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,352 DEBUG Processing 267/594 atomic regions from SNP 79821 to 80421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,365 DEBUG Processing 686/703 atomic regions from SNP 205553 to 206153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,396 DEBUG Processing 548/672 atomic regions from SNP 164148 to 164748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,429 DEBUG Processing 404/659 atomic regions from SNP 121187 to 121787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,537 DEBUG Processing 268/594 atomic regions from SNP 80121 to 80721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,572 DEBUG Processing 687/703 atomic regions from SNP 205853 to 206453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,616 DEBUG Processing 549/672 atomic regions from SNP 164448 to 165048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,661 DEBUG Processing 405/659 atomic regions from SNP 121487 to 122087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,720 DEBUG Processing 269/594 atomic regions from SNP 80421 to 81021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,791 DEBUG Processing 688/703 atomic regions from SNP 206153 to 206753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:54,833 DEBUG Processing 550/672 atomic regions from SNP 164748 to 165348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:54,885 DEBUG Processing 406/659 atomic regions from SNP 121787 to 122387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:54,900 DEBUG Processing 270/594 atomic regions from SNP 80721 to 81321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,009 DEBUG Processing 689/703 atomic regions from SNP 206453 to 207053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,038 DEBUG Processing 551/672 atomic regions from SNP 165048 to 165648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,081 DEBUG Processing 271/594 atomic regions from SNP 81021 to 81621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,098 DEBUG Processing 407/659 atomic regions from SNP 122087 to 122687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,224 DEBUG Processing 690/703 atomic regions from SNP 206753 to 207353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,242 DEBUG Processing 552/672 atomic regions from SNP 165348 to 165948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,263 DEBUG Processing 272/594 atomic regions from SNP 81321 to 81921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,295 DEBUG Processing 408/659 atomic regions from SNP 122387 to 122987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,425 DEBUG Processing 691/703 atomic regions from SNP 207053 to 207653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,436 DEBUG Processing 553/672 atomic regions from SNP 165648 to 166248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,445 DEBUG Processing 273/594 atomic regions from SNP 81621 to 82221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,488 DEBUG Processing 409/659 atomic regions from SNP 122687 to 123287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,628 DEBUG Processing 274/594 atomic regions from SNP 81921 to 82521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,631 DEBUG Processing 554/672 atomic regions from SNP 165948 to 166548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,640 DEBUG Processing 692/703 atomic regions from SNP 207353 to 207953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,682 DEBUG Processing 410/659 atomic regions from SNP 122987 to 123587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,811 DEBUG Processing 275/594 atomic regions from SNP 82221 to 82821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,825 DEBUG Processing 555/672 atomic regions from SNP 166248 to 166848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:55,868 DEBUG Processing 693/703 atomic regions from SNP 207653 to 208253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:55,874 DEBUG Processing 411/659 atomic regions from SNP 123287 to 123887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:55,992 DEBUG Processing 276/594 atomic regions from SNP 82521 to 83121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,026 DEBUG Processing 556/672 atomic regions from SNP 166548 to 167148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,070 DEBUG Processing 412/659 atomic regions from SNP 123587 to 124187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,094 DEBUG Processing 694/703 atomic regions from SNP 207953 to 208553 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,168 DEBUG Processing 277/594 atomic regions from SNP 82821 to 83421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,217 DEBUG Processing 557/672 atomic regions from SNP 166848 to 167448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,267 DEBUG Processing 413/659 atomic regions from SNP 123887 to 124487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,323 DEBUG Processing 695/703 atomic regions from SNP 208253 to 208853 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,348 DEBUG Processing 278/594 atomic regions from SNP 83121 to 83721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,408 DEBUG Processing 558/672 atomic regions from SNP 167148 to 167748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,465 DEBUG Processing 414/659 atomic regions from SNP 124187 to 124787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,530 DEBUG Processing 279/594 atomic regions from SNP 83421 to 84021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,555 DEBUG Processing 696/703 atomic regions from SNP 208553 to 209153 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,626 DEBUG Processing 559/672 atomic regions from SNP 167448 to 168048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,664 DEBUG Processing 415/659 atomic regions from SNP 124487 to 125087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,708 DEBUG Processing 280/594 atomic regions from SNP 83721 to 84321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,788 DEBUG Processing 697/703 atomic regions from SNP 208853 to 209453 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:56,855 DEBUG Processing 560/672 atomic regions from SNP 167748 to 168348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:56,863 DEBUG Processing 416/659 atomic regions from SNP 124787 to 125387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:56,887 DEBUG Processing 281/594 atomic regions from SNP 84021 to 84621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,020 DEBUG Processing 698/703 atomic regions from SNP 209153 to 209753 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,058 DEBUG Processing 561/672 atomic regions from SNP 168048 to 168648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,067 DEBUG Processing 282/594 atomic regions from SNP 84321 to 84921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,070 DEBUG Processing 417/659 atomic regions from SNP 125087 to 125687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,107 DEBUG Segmenting atomic regions: 2025-01-31 09:57:57,180 DEBUG Processing 1/558 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,248 DEBUG Processing 283/594 atomic regions from SNP 84621 to 85221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,249 DEBUG Processing 699/703 atomic regions from SNP 209453 to 210053 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,250 DEBUG Processing 562/672 atomic regions from SNP 168348 to 168948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,284 DEBUG Processing 418/659 atomic regions from SNP 125387 to 125987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,360 DEBUG Processing 2/558 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,429 DEBUG Processing 284/594 atomic regions from SNP 84921 to 85521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,442 DEBUG Processing 563/672 atomic regions from SNP 168648 to 169248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,469 DEBUG Processing 700/703 atomic regions from SNP 209753 to 210353 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,484 DEBUG Processing 419/659 atomic regions from SNP 125687 to 126287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,556 DEBUG Processing 3/558 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,610 DEBUG Processing 285/594 atomic regions from SNP 85221 to 85821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,633 DEBUG Processing 564/672 atomic regions from SNP 168948 to 169548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,691 DEBUG Processing 701/703 atomic regions from SNP 210053 to 210653 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,693 DEBUG Processing 420/659 atomic regions from SNP 125987 to 126587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,759 DEBUG Processing 4/558 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,789 DEBUG Processing 286/594 atomic regions from SNP 85521 to 86121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,842 DEBUG Processing 565/672 atomic regions from SNP 169248 to 169848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:57,891 DEBUG Processing 421/659 atomic regions from SNP 126287 to 126887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:57,907 DEBUG Processing 702/703 atomic regions from SNP 210353 to 210953 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:57,961 DEBUG Processing 5/558 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,969 DEBUG Processing 287/594 atomic regions from SNP 85821 to 86421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,061 DEBUG Processing 566/672 atomic regions from SNP 169548 to 170148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,097 DEBUG Processing 422/659 atomic regions from SNP 126587 to 127187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,108 DEBUG Processing 703/703 atomic regions from SNP 210653 to 211253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:57:58,149 DEBUG Processing 288/594 atomic regions from SNP 86121 to 86721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,171 DEBUG Processing 6/558 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,221 DEBUG Unique SNPs positions in subchromosome 1: 211254 2025-01-31 09:57:58,253 DEBUG Processing 567/672 atomic regions from SNP 169848 to 170448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,299 DEBUG Processing 423/659 atomic regions from SNP 126887 to 127487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,332 DEBUG Processing 289/594 atomic regions from SNP 86421 to 87021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,387 DEBUG Processing 7/558 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,444 DEBUG Processing 568/672 atomic regions from SNP 170148 to 170748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,500 DEBUG Processing 424/659 atomic regions from SNP 127187 to 127787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,514 DEBUG Processing 290/594 atomic regions from SNP 86721 to 87321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,600 DEBUG Processing 8/558 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,634 DEBUG Processing 569/672 atomic regions from SNP 170448 to 171048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,695 DEBUG Processing 291/594 atomic regions from SNP 87021 to 87621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,723 DEBUG Processing 425/659 atomic regions from SNP 127487 to 128087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:58,816 DEBUG Processing 9/558 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,824 DEBUG Processing 570/672 atomic regions from SNP 170748 to 171348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:58,877 DEBUG Processing 292/594 atomic regions from SNP 87321 to 87921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,951 DEBUG Processing 426/659 atomic regions from SNP 127787 to 128387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,033 DEBUG Processing 10/558 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,038 DEBUG Processing 571/672 atomic regions from SNP 171048 to 171648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,059 DEBUG Processing 293/594 atomic regions from SNP 87621 to 88221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,161 DEBUG Processing 427/659 atomic regions from SNP 128087 to 128687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,240 DEBUG Processing 11/558 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,240 DEBUG Processing 294/594 atomic regions from SNP 87921 to 88521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,248 DEBUG Processing 572/672 atomic regions from SNP 171348 to 171948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,387 DEBUG Processing 428/659 atomic regions from SNP 128387 to 128987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,422 DEBUG Processing 295/594 atomic regions from SNP 88221 to 88821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,439 DEBUG Processing 573/672 atomic regions from SNP 171648 to 172248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,454 DEBUG Processing 12/558 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,605 DEBUG Processing 296/594 atomic regions from SNP 88521 to 89121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,615 DEBUG Processing 429/659 atomic regions from SNP 128687 to 129287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,630 DEBUG Processing 574/672 atomic regions from SNP 171948 to 172548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,642 DEBUG Processing 13/558 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,787 DEBUG Processing 297/594 atomic regions from SNP 88821 to 89421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,821 DEBUG Processing 575/672 atomic regions from SNP 172248 to 172848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:59,822 DEBUG Processing 14/558 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,839 DEBUG Processing 430/659 atomic regions from SNP 128987 to 129587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:59,969 DEBUG Processing 298/594 atomic regions from SNP 89121 to 89721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,005 DEBUG Processing 15/558 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,011 DEBUG Processing 576/672 atomic regions from SNP 172548 to 173148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,046 DEBUG Processing 431/659 atomic regions from SNP 129287 to 129887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,151 DEBUG Processing 299/594 atomic regions from SNP 89421 to 90021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,200 DEBUG Processing 16/558 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,204 DEBUG Processing 577/672 atomic regions from SNP 172848 to 173448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,247 DEBUG Processing 432/659 atomic regions from SNP 129587 to 130187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,331 DEBUG Processing 300/594 atomic regions from SNP 89721 to 90321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,385 DEBUG Processing 17/558 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,402 DEBUG Processing 578/672 atomic regions from SNP 173148 to 173748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,447 DEBUG Processing 433/659 atomic regions from SNP 129887 to 130487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,511 DEBUG Processing 301/594 atomic regions from SNP 90021 to 90621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,563 DEBUG Processing 18/558 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,618 DEBUG Processing 579/672 atomic regions from SNP 173448 to 174048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,645 DEBUG Processing 434/659 atomic regions from SNP 130187 to 130787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,688 DEBUG Processing 302/594 atomic regions from SNP 90321 to 90921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,740 DEBUG Processing 19/558 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,827 DEBUG Processing 580/672 atomic regions from SNP 173748 to 174348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:00,844 DEBUG Processing 435/659 atomic regions from SNP 130487 to 131087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:00,869 DEBUG Processing 303/594 atomic regions from SNP 90621 to 91221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,919 DEBUG Processing 20/558 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,018 DEBUG Processing 581/672 atomic regions from SNP 174048 to 174648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,042 DEBUG Processing 436/659 atomic regions from SNP 130787 to 131387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,048 DEBUG Processing 304/594 atomic regions from SNP 90921 to 91521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,097 DEBUG Processing 21/558 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,209 DEBUG Processing 582/672 atomic regions from SNP 174348 to 174948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,229 DEBUG Processing 305/594 atomic regions from SNP 91221 to 91821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,238 DEBUG Processing 437/659 atomic regions from SNP 131087 to 131687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,276 DEBUG Processing 22/558 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,398 DEBUG Processing 583/672 atomic regions from SNP 174648 to 175248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,411 DEBUG Processing 306/594 atomic regions from SNP 91521 to 92121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,441 DEBUG Processing 438/659 atomic regions from SNP 131387 to 131987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,462 DEBUG Processing 23/558 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,603 DEBUG Processing 584/672 atomic regions from SNP 174948 to 175548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,603 DEBUG Processing 307/594 atomic regions from SNP 91821 to 92421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,641 DEBUG Processing 439/659 atomic regions from SNP 131687 to 132287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,652 DEBUG Processing 24/558 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,785 DEBUG Processing 308/594 atomic regions from SNP 92121 to 92721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,802 DEBUG Processing 585/672 atomic regions from SNP 175248 to 175848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:01,838 DEBUG Processing 25/558 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,840 DEBUG Processing 440/659 atomic regions from SNP 131987 to 132587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:01,972 DEBUG Processing 309/594 atomic regions from SNP 92421 to 93021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,997 DEBUG Processing 586/672 atomic regions from SNP 175548 to 176148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,025 DEBUG Processing 26/558 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,046 DEBUG Processing 441/659 atomic regions from SNP 132287 to 132887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,155 DEBUG Processing 310/594 atomic regions from SNP 92721 to 93321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,194 DEBUG Processing 587/672 atomic regions from SNP 175848 to 176448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,212 DEBUG Processing 27/558 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,246 DEBUG Processing 442/659 atomic regions from SNP 132587 to 133187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,336 DEBUG Processing 311/594 atomic regions from SNP 93021 to 93621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,386 DEBUG Processing 588/672 atomic regions from SNP 176148 to 176748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,393 DEBUG Processing 28/558 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,457 DEBUG Processing 443/659 atomic regions from SNP 132887 to 133487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,515 DEBUG Processing 312/594 atomic regions from SNP 93321 to 93921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,572 DEBUG Processing 29/558 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,576 DEBUG Processing 589/672 atomic regions from SNP 176448 to 177048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,678 DEBUG Processing 444/659 atomic regions from SNP 133187 to 133787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,695 DEBUG Processing 313/594 atomic regions from SNP 93621 to 94221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,753 DEBUG Processing 30/558 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,769 DEBUG Processing 590/672 atomic regions from SNP 176748 to 177348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:02,878 DEBUG Processing 314/594 atomic regions from SNP 93921 to 94521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,903 DEBUG Processing 445/659 atomic regions from SNP 133487 to 134087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:02,935 DEBUG Processing 31/558 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,962 DEBUG Processing 591/672 atomic regions from SNP 177048 to 177648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,061 DEBUG Processing 315/594 atomic regions from SNP 94221 to 94821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,137 DEBUG Processing 446/659 atomic regions from SNP 133787 to 134387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,144 DEBUG Processing 32/558 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,155 DEBUG Processing 592/672 atomic regions from SNP 177348 to 177948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,242 DEBUG Processing 316/594 atomic regions from SNP 94521 to 95121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,346 DEBUG Processing 593/672 atomic regions from SNP 177648 to 178248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,364 DEBUG Processing 33/558 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,364 DEBUG Processing 447/659 atomic regions from SNP 134087 to 134687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,429 DEBUG Processing 317/594 atomic regions from SNP 94821 to 95421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,539 DEBUG Processing 594/672 atomic regions from SNP 177948 to 178548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,574 DEBUG Processing 34/558 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,591 DEBUG Processing 448/659 atomic regions from SNP 134387 to 134987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,638 DEBUG Processing 318/594 atomic regions from SNP 95121 to 95721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,730 DEBUG Processing 595/672 atomic regions from SNP 178248 to 178848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,756 DEBUG Processing 35/558 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,812 DEBUG Processing 449/659 atomic regions from SNP 134687 to 135287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:03,837 DEBUG Processing 319/594 atomic regions from SNP 95421 to 96021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,937 DEBUG Processing 596/672 atomic regions from SNP 178548 to 179148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:03,940 DEBUG Processing 36/558 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,032 DEBUG Processing 320/594 atomic regions from SNP 95721 to 96321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,042 DEBUG Processing 450/659 atomic regions from SNP 134987 to 135587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,124 DEBUG Processing 37/558 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,152 DEBUG Processing 597/672 atomic regions from SNP 178848 to 179448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,212 DEBUG Processing 321/594 atomic regions from SNP 96021 to 96621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,275 DEBUG Processing 451/659 atomic regions from SNP 135287 to 135887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,307 DEBUG Processing 38/558 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,345 DEBUG Processing 598/672 atomic regions from SNP 179148 to 179748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,397 DEBUG Processing 322/594 atomic regions from SNP 96321 to 96921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,495 DEBUG Processing 39/558 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,512 DEBUG Processing 452/659 atomic regions from SNP 135587 to 136187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,542 DEBUG Processing 599/672 atomic regions from SNP 179448 to 180048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,587 DEBUG Processing 323/594 atomic regions from SNP 96621 to 97221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,681 DEBUG Processing 40/558 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,734 DEBUG Processing 453/659 atomic regions from SNP 135887 to 136487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:04,741 DEBUG Processing 600/672 atomic regions from SNP 179748 to 180348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,797 DEBUG Processing 324/594 atomic regions from SNP 96921 to 97521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,868 DEBUG Processing 41/558 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,936 DEBUG Processing 601/672 atomic regions from SNP 180048 to 180648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:04,963 DEBUG Processing 454/659 atomic regions from SNP 136187 to 136787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,003 DEBUG Processing 325/594 atomic regions from SNP 97221 to 97821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,052 DEBUG Processing 42/558 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,133 DEBUG Processing 602/672 atomic regions from SNP 180348 to 180948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,188 DEBUG Processing 455/659 atomic regions from SNP 136487 to 137087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,194 DEBUG Processing 326/594 atomic regions from SNP 97521 to 98121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,238 DEBUG Processing 43/558 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,344 DEBUG Processing 603/672 atomic regions from SNP 180648 to 181248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,379 DEBUG Processing 327/594 atomic regions from SNP 97821 to 98421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,411 DEBUG Processing 456/659 atomic regions from SNP 136787 to 137387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,445 DEBUG Processing 44/558 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,552 DEBUG Processing 604/672 atomic regions from SNP 180948 to 181548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,566 DEBUG Processing 328/594 atomic regions from SNP 98121 to 98721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,646 DEBUG Processing 457/659 atomic regions from SNP 137087 to 137687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,652 DEBUG Processing 45/558 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,752 DEBUG Processing 329/594 atomic regions from SNP 98421 to 99021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,763 DEBUG Processing 605/672 atomic regions from SNP 181248 to 181848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:05,862 DEBUG Processing 46/558 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,873 DEBUG Processing 458/659 atomic regions from SNP 137387 to 137987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:05,939 DEBUG Processing 330/594 atomic regions from SNP 98721 to 99321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,962 DEBUG Processing 606/672 atomic regions from SNP 181548 to 182148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,063 DEBUG Processing 47/558 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,094 DEBUG Processing 459/659 atomic regions from SNP 137687 to 138287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,130 DEBUG Processing 331/594 atomic regions from SNP 99021 to 99621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,165 DEBUG Processing 607/672 atomic regions from SNP 181848 to 182448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,271 DEBUG Processing 48/558 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,296 DEBUG Processing 460/659 atomic regions from SNP 137987 to 138587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,317 DEBUG Processing 332/594 atomic regions from SNP 99321 to 99921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,365 DEBUG Processing 608/672 atomic regions from SNP 182148 to 182748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,476 DEBUG Processing 49/558 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,497 DEBUG Processing 461/659 atomic regions from SNP 138287 to 138887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,505 DEBUG Processing 333/594 atomic regions from SNP 99621 to 100221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,562 DEBUG Processing 609/672 atomic regions from SNP 182448 to 183048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,671 DEBUG Processing 50/558 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,691 DEBUG Processing 334/594 atomic regions from SNP 99921 to 100521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,707 DEBUG Processing 462/659 atomic regions from SNP 138587 to 139187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,758 DEBUG Processing 610/672 atomic regions from SNP 182748 to 183348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:06,856 DEBUG Processing 51/558 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,874 DEBUG Processing 335/594 atomic regions from SNP 100221 to 100821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,920 DEBUG Processing 463/659 atomic regions from SNP 138887 to 139487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:06,954 DEBUG Processing 611/672 atomic regions from SNP 183048 to 183648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,053 DEBUG Processing 52/558 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,056 DEBUG Processing 336/594 atomic regions from SNP 100521 to 101121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,118 DEBUG Processing 464/659 atomic regions from SNP 139187 to 139787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,155 DEBUG Processing 612/672 atomic regions from SNP 183348 to 183948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,231 DEBUG Processing 53/558 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,239 DEBUG Processing 337/594 atomic regions from SNP 100821 to 101421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,315 DEBUG Processing 465/659 atomic regions from SNP 139487 to 140087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,375 DEBUG Processing 613/672 atomic regions from SNP 183648 to 184248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,410 DEBUG Processing 54/558 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,423 DEBUG Processing 338/594 atomic regions from SNP 101121 to 101721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,521 DEBUG Processing 466/659 atomic regions from SNP 139787 to 140387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,588 DEBUG Processing 55/558 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,601 DEBUG Processing 614/672 atomic regions from SNP 183948 to 184548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,606 DEBUG Processing 339/594 atomic regions from SNP 101421 to 102021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,750 DEBUG Processing 467/659 atomic regions from SNP 140087 to 140687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,771 DEBUG Processing 56/558 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,793 DEBUG Processing 340/594 atomic regions from SNP 101721 to 102321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,814 DEBUG Processing 615/672 atomic regions from SNP 184248 to 184848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:07,953 DEBUG Processing 57/558 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,981 DEBUG Processing 468/659 atomic regions from SNP 140387 to 140987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:07,983 DEBUG Processing 341/594 atomic regions from SNP 102021 to 102621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,011 DEBUG Processing 616/672 atomic regions from SNP 184548 to 185148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,136 DEBUG Processing 58/558 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,168 DEBUG Processing 342/594 atomic regions from SNP 102321 to 102921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,207 DEBUG Processing 617/672 atomic regions from SNP 184848 to 185448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,218 DEBUG Processing 469/659 atomic regions from SNP 140687 to 141287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,317 DEBUG Processing 59/558 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,354 DEBUG Processing 343/594 atomic regions from SNP 102621 to 103221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,403 DEBUG Processing 618/672 atomic regions from SNP 185148 to 185748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,450 DEBUG Processing 470/659 atomic regions from SNP 140987 to 141587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,513 DEBUG Processing 60/558 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,538 DEBUG Processing 344/594 atomic regions from SNP 102921 to 103521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,596 DEBUG Processing 619/672 atomic regions from SNP 185448 to 186048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,670 DEBUG Processing 471/659 atomic regions from SNP 141287 to 141887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,712 DEBUG Processing 61/558 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,721 DEBUG Processing 345/594 atomic regions from SNP 103221 to 103821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,790 DEBUG Processing 620/672 atomic regions from SNP 185748 to 186348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:08,864 DEBUG Processing 472/659 atomic regions from SNP 141587 to 142187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:08,905 DEBUG Processing 346/594 atomic regions from SNP 103521 to 104121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,915 DEBUG Processing 62/558 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,985 DEBUG Processing 621/672 atomic regions from SNP 186048 to 186648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,060 DEBUG Processing 473/659 atomic regions from SNP 141887 to 142487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,089 DEBUG Processing 347/594 atomic regions from SNP 103821 to 104421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,109 DEBUG Processing 63/558 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,181 DEBUG Processing 622/672 atomic regions from SNP 186348 to 186948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,259 DEBUG Processing 474/659 atomic regions from SNP 142187 to 142787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,271 DEBUG Processing 348/594 atomic regions from SNP 104121 to 104721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,309 DEBUG Processing 64/558 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,379 DEBUG Processing 623/672 atomic regions from SNP 186648 to 187248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,454 DEBUG Processing 349/594 atomic regions from SNP 104421 to 105021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,458 DEBUG Processing 475/659 atomic regions from SNP 142487 to 143087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,509 DEBUG Processing 65/558 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,599 DEBUG Processing 624/672 atomic regions from SNP 186948 to 187548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,641 DEBUG Processing 350/594 atomic regions from SNP 104721 to 105321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,659 DEBUG Processing 476/659 atomic regions from SNP 142787 to 143387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,715 DEBUG Processing 66/558 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,826 DEBUG Processing 625/672 atomic regions from SNP 187248 to 187848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:09,826 DEBUG Processing 351/594 atomic regions from SNP 105021 to 105621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,855 DEBUG Processing 477/659 atomic regions from SNP 143087 to 143687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:09,921 DEBUG Processing 67/558 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,011 DEBUG Processing 352/594 atomic regions from SNP 105321 to 105921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,053 DEBUG Processing 478/659 atomic regions from SNP 143387 to 143987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,058 DEBUG Processing 626/672 atomic regions from SNP 187548 to 188148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,110 DEBUG Processing 68/558 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,193 DEBUG Processing 353/594 atomic regions from SNP 105621 to 106221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,254 DEBUG Processing 479/659 atomic regions from SNP 143687 to 144287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,280 DEBUG Processing 627/672 atomic regions from SNP 187848 to 188448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,298 DEBUG Processing 69/558 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,376 DEBUG Processing 354/594 atomic regions from SNP 105921 to 106521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,454 DEBUG Processing 480/659 atomic regions from SNP 143987 to 144587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,485 DEBUG Processing 70/558 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,494 DEBUG Processing 628/672 atomic regions from SNP 188148 to 188748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,570 DEBUG Processing 355/594 atomic regions from SNP 106221 to 106821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,653 DEBUG Processing 481/659 atomic regions from SNP 144287 to 144887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,673 DEBUG Processing 71/558 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,701 DEBUG Processing 629/672 atomic regions from SNP 188448 to 189048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,772 DEBUG Processing 356/594 atomic regions from SNP 106521 to 107121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,856 DEBUG Processing 482/659 atomic regions from SNP 144587 to 145187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:10,859 DEBUG Processing 72/558 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,909 DEBUG Processing 630/672 atomic regions from SNP 188748 to 189348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:10,958 DEBUG Processing 357/594 atomic regions from SNP 106821 to 107421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,045 DEBUG Processing 73/558 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,057 DEBUG Processing 483/659 atomic regions from SNP 144887 to 145487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,128 DEBUG Processing 631/672 atomic regions from SNP 189048 to 189648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,143 DEBUG Processing 358/594 atomic regions from SNP 107121 to 107721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,232 DEBUG Processing 74/558 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,260 DEBUG Processing 484/659 atomic regions from SNP 145187 to 145787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,331 DEBUG Processing 359/594 atomic regions from SNP 107421 to 108021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,356 DEBUG Processing 632/672 atomic regions from SNP 189348 to 189948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,430 DEBUG Processing 75/558 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,471 DEBUG Processing 485/659 atomic regions from SNP 145487 to 146087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,521 DEBUG Processing 360/594 atomic regions from SNP 107721 to 108321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,578 DEBUG Processing 633/672 atomic regions from SNP 189648 to 190248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,625 DEBUG Processing 76/558 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,680 DEBUG Processing 486/659 atomic regions from SNP 145787 to 146387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,715 DEBUG Processing 361/594 atomic regions from SNP 108021 to 108621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,777 DEBUG Processing 634/672 atomic regions from SNP 189948 to 190548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:11,814 DEBUG Processing 77/558 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,887 DEBUG Processing 487/659 atomic regions from SNP 146087 to 146687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:11,904 DEBUG Processing 362/594 atomic regions from SNP 108321 to 108921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,977 DEBUG Processing 635/672 atomic regions from SNP 190248 to 190848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,006 DEBUG Processing 78/558 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,093 DEBUG Processing 488/659 atomic regions from SNP 146387 to 146987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,098 DEBUG Processing 363/594 atomic regions from SNP 108621 to 109221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,187 DEBUG Processing 636/672 atomic regions from SNP 190548 to 191148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,199 DEBUG Processing 79/558 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,385 DEBUG Processing 364/594 atomic regions from SNP 108921 to 109521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,399 DEBUG Processing 489/659 atomic regions from SNP 146687 to 147287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,472 DEBUG Processing 80/558 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,478 DEBUG Processing 637/672 atomic regions from SNP 190848 to 191448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,570 DEBUG Processing 365/594 atomic regions from SNP 109221 to 109821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,594 DEBUG Processing 490/659 atomic regions from SNP 146987 to 147587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,656 DEBUG Processing 81/558 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,697 DEBUG Processing 638/672 atomic regions from SNP 191148 to 191748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,753 DEBUG Processing 366/594 atomic regions from SNP 109521 to 110121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,786 DEBUG Processing 491/659 atomic regions from SNP 147287 to 147887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:12,856 DEBUG Processing 82/558 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,909 DEBUG Processing 639/672 atomic regions from SNP 191448 to 192048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:12,938 DEBUG Processing 367/594 atomic regions from SNP 109821 to 110421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,982 DEBUG Processing 492/659 atomic regions from SNP 147587 to 148187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,067 DEBUG Processing 83/558 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,102 DEBUG Processing 640/672 atomic regions from SNP 191748 to 192348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,122 DEBUG Processing 368/594 atomic regions from SNP 110121 to 110721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,192 DEBUG Processing 493/659 atomic regions from SNP 147887 to 148487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,277 DEBUG Processing 84/558 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,295 DEBUG Processing 641/672 atomic regions from SNP 192048 to 192648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,304 DEBUG Processing 369/594 atomic regions from SNP 110421 to 111021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,395 DEBUG Processing 494/659 atomic regions from SNP 148187 to 148787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,478 DEBUG Processing 85/558 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,493 DEBUG Processing 642/672 atomic regions from SNP 192348 to 192948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,518 DEBUG Processing 370/594 atomic regions from SNP 110721 to 111321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,595 DEBUG Processing 495/659 atomic regions from SNP 148487 to 149087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,700 DEBUG Processing 86/558 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,704 DEBUG Processing 643/672 atomic regions from SNP 192648 to 193248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,737 DEBUG Processing 371/594 atomic regions from SNP 111021 to 111621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,803 DEBUG Processing 496/659 atomic regions from SNP 148787 to 149387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:13,905 DEBUG Processing 87/558 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,909 DEBUG Processing 644/672 atomic regions from SNP 192948 to 193548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:13,953 DEBUG Processing 372/594 atomic regions from SNP 111321 to 111921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,006 DEBUG Processing 497/659 atomic regions from SNP 149087 to 149687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,112 DEBUG Processing 645/672 atomic regions from SNP 193248 to 193848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,120 DEBUG Processing 88/558 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,144 DEBUG Processing 373/594 atomic regions from SNP 111621 to 112221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,200 DEBUG Processing 498/659 atomic regions from SNP 149387 to 149987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,313 DEBUG Processing 646/672 atomic regions from SNP 193548 to 194148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,334 DEBUG Processing 374/594 atomic regions from SNP 111921 to 112521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,335 DEBUG Processing 89/558 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,400 DEBUG Processing 499/659 atomic regions from SNP 149687 to 150287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,521 DEBUG Processing 647/672 atomic regions from SNP 193848 to 194448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,531 DEBUG Processing 375/594 atomic regions from SNP 112221 to 112821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,560 DEBUG Processing 90/558 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,600 DEBUG Processing 500/659 atomic regions from SNP 149987 to 150587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,737 DEBUG Processing 648/672 atomic regions from SNP 194148 to 194748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,739 DEBUG Processing 376/594 atomic regions from SNP 112521 to 113121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,788 DEBUG Processing 91/558 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,801 DEBUG Processing 501/659 atomic regions from SNP 150287 to 150887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:14,936 DEBUG Processing 377/594 atomic regions from SNP 112821 to 113421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,946 DEBUG Processing 649/672 atomic regions from SNP 194448 to 195048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:14,991 DEBUG Processing 92/558 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,010 DEBUG Processing 502/659 atomic regions from SNP 150587 to 151187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,135 DEBUG Processing 378/594 atomic regions from SNP 113121 to 113721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,156 DEBUG Processing 650/672 atomic regions from SNP 194748 to 195348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,195 DEBUG Processing 93/558 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,210 DEBUG Processing 503/659 atomic regions from SNP 150887 to 151487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,329 DEBUG Processing 379/594 atomic regions from SNP 113421 to 114021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,362 DEBUG Processing 651/672 atomic regions from SNP 195048 to 195648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,402 DEBUG Processing 94/558 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,413 DEBUG Processing 504/659 atomic regions from SNP 151187 to 151787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,524 DEBUG Processing 380/594 atomic regions from SNP 113721 to 114321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,566 DEBUG Processing 652/672 atomic regions from SNP 195348 to 195948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,588 DEBUG Processing 95/558 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,611 DEBUG Processing 505/659 atomic regions from SNP 151487 to 152087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,713 DEBUG Processing 381/594 atomic regions from SNP 114021 to 114621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,765 DEBUG Processing 653/672 atomic regions from SNP 195648 to 196248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:15,773 DEBUG Processing 96/558 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,809 DEBUG Processing 506/659 atomic regions from SNP 151787 to 152387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:15,899 DEBUG Processing 382/594 atomic regions from SNP 114321 to 114921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,957 DEBUG Processing 97/558 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,965 DEBUG Processing 654/672 atomic regions from SNP 195948 to 196548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,006 DEBUG Processing 507/659 atomic regions from SNP 152087 to 152687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,087 DEBUG Processing 383/594 atomic regions from SNP 114621 to 115221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,139 DEBUG Processing 98/558 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,167 DEBUG Processing 655/672 atomic regions from SNP 196248 to 196848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,198 DEBUG Processing 508/659 atomic regions from SNP 152387 to 152987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,274 DEBUG Processing 384/594 atomic regions from SNP 114921 to 115521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,320 DEBUG Processing 99/558 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,363 DEBUG Processing 656/672 atomic regions from SNP 196548 to 197148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,393 DEBUG Processing 509/659 atomic regions from SNP 152687 to 153287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,462 DEBUG Processing 385/594 atomic regions from SNP 115221 to 115821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,503 DEBUG Processing 100/558 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,559 DEBUG Processing 657/672 atomic regions from SNP 196848 to 197448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,590 DEBUG Processing 510/659 atomic regions from SNP 152987 to 153587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,654 DEBUG Processing 386/594 atomic regions from SNP 115521 to 116121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,688 DEBUG Processing 101/558 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,758 DEBUG Processing 658/672 atomic regions from SNP 197148 to 197748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,790 DEBUG Processing 511/659 atomic regions from SNP 153287 to 153887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:16,850 DEBUG Processing 387/594 atomic regions from SNP 115821 to 116421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,886 DEBUG Processing 102/558 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,961 DEBUG Processing 659/672 atomic regions from SNP 197448 to 198048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:16,992 DEBUG Processing 512/659 atomic regions from SNP 153587 to 154187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,039 DEBUG Processing 388/594 atomic regions from SNP 116121 to 116721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,097 DEBUG Processing 103/558 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,163 DEBUG Processing 660/672 atomic regions from SNP 197748 to 198348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,193 DEBUG Processing 513/659 atomic regions from SNP 153887 to 154487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,235 DEBUG Processing 389/594 atomic regions from SNP 116421 to 117021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,319 DEBUG Processing 104/558 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,376 DEBUG Processing 661/672 atomic regions from SNP 198048 to 198648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,395 DEBUG Processing 514/659 atomic regions from SNP 154187 to 154787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,439 DEBUG Processing 390/594 atomic regions from SNP 116721 to 117321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,507 DEBUG Processing 105/558 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,586 DEBUG Processing 662/672 atomic regions from SNP 198348 to 198948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,604 DEBUG Processing 515/659 atomic regions from SNP 154487 to 155087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,643 DEBUG Processing 391/594 atomic regions from SNP 117021 to 117621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,696 DEBUG Processing 106/558 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,790 DEBUG Processing 663/672 atomic regions from SNP 198648 to 199248 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:17,807 DEBUG Processing 516/659 atomic regions from SNP 154787 to 155387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:17,832 DEBUG Processing 392/594 atomic regions from SNP 117321 to 117921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,896 DEBUG Processing 107/558 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,989 DEBUG Processing 664/672 atomic regions from SNP 198948 to 199548 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,010 DEBUG Processing 517/659 atomic regions from SNP 155087 to 155687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,028 DEBUG Processing 393/594 atomic regions from SNP 117621 to 118221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,110 DEBUG Processing 108/558 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,189 DEBUG Processing 665/672 atomic regions from SNP 199248 to 199848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,210 DEBUG Processing 518/659 atomic regions from SNP 155387 to 155987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,218 DEBUG Processing 394/594 atomic regions from SNP 117921 to 118521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,302 DEBUG Processing 109/558 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,394 DEBUG Processing 666/672 atomic regions from SNP 199548 to 200148 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,414 DEBUG Processing 395/594 atomic regions from SNP 118221 to 118821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,419 DEBUG Processing 519/659 atomic regions from SNP 155687 to 156287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,494 DEBUG Processing 110/558 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,594 DEBUG Processing 667/672 atomic regions from SNP 199848 to 200448 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,606 DEBUG Processing 396/594 atomic regions from SNP 118521 to 119121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,614 DEBUG Processing 520/659 atomic regions from SNP 155987 to 156587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,686 DEBUG Processing 111/558 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,795 DEBUG Processing 668/672 atomic regions from SNP 200148 to 200748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:18,799 DEBUG Processing 397/594 atomic regions from SNP 118821 to 119421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,812 DEBUG Processing 521/659 atomic regions from SNP 156287 to 156887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:18,883 DEBUG Processing 112/558 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,994 DEBUG Processing 398/594 atomic regions from SNP 119121 to 119721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,998 DEBUG Processing 669/672 atomic regions from SNP 200448 to 201048 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,009 DEBUG Processing 522/659 atomic regions from SNP 156587 to 157187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,070 DEBUG Processing 113/558 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,188 DEBUG Processing 399/594 atomic regions from SNP 119421 to 120021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,204 DEBUG Processing 670/672 atomic regions from SNP 200748 to 201348 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,206 DEBUG Processing 523/659 atomic regions from SNP 156887 to 157487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,267 DEBUG Processing 114/558 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,388 DEBUG Processing 400/594 atomic regions from SNP 119721 to 120321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,407 DEBUG Processing 524/659 atomic regions from SNP 157187 to 157787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,433 DEBUG Processing 671/672 atomic regions from SNP 201048 to 201648 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,473 DEBUG Processing 115/558 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,577 DEBUG Processing 401/594 atomic regions from SNP 120021 to 120621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,604 DEBUG Processing 525/659 atomic regions from SNP 157487 to 158087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,655 DEBUG Processing 116/558 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,660 DEBUG Processing 672/672 atomic regions from SNP 201348 to 201948 for chr13 (subchromosome 1 of 1). 2025-01-31 09:58:19,766 DEBUG Processing 402/594 atomic regions from SNP 120321 to 120921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,805 DEBUG Processing 526/659 atomic regions from SNP 157787 to 158387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:19,808 DEBUG Unique SNPs positions in subchromosome 1: 201949 2025-01-31 09:58:19,851 DEBUG Processing 117/558 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,966 DEBUG Processing 403/594 atomic regions from SNP 120621 to 121221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,007 DEBUG Processing 527/659 atomic regions from SNP 158087 to 158687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,052 DEBUG Processing 118/558 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,173 DEBUG Processing 404/594 atomic regions from SNP 120921 to 121521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,217 DEBUG Processing 528/659 atomic regions from SNP 158387 to 158987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,270 DEBUG Processing 119/558 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,392 DEBUG Processing 405/594 atomic regions from SNP 121221 to 121821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,447 DEBUG Processing 529/659 atomic regions from SNP 158687 to 159287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,474 DEBUG Processing 120/558 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,619 DEBUG Processing 406/594 atomic regions from SNP 121521 to 122121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,659 DEBUG Processing 530/659 atomic regions from SNP 158987 to 159587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,669 DEBUG Processing 121/558 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,862 DEBUG Processing 407/594 atomic regions from SNP 121821 to 122421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,866 DEBUG Processing 122/558 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,871 DEBUG Processing 531/659 atomic regions from SNP 159287 to 159887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:20,878 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:58:21,062 DEBUG Processing 123/558 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,079 DEBUG Processing 408/594 atomic regions from SNP 122121 to 122721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,085 DEBUG Processing 532/659 atomic regions from SNP 159587 to 160187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,257 DEBUG Processing 124/558 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,286 DEBUG Processing 409/594 atomic regions from SNP 122421 to 123021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,318 DEBUG Processing 533/659 atomic regions from SNP 159887 to 160487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,443 DEBUG Processing 125/558 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,504 DEBUG Processing 410/594 atomic regions from SNP 122721 to 123321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,539 DEBUG Processing 534/659 atomic regions from SNP 160187 to 160787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,622 DEBUG Processing 126/558 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,724 DEBUG Processing 411/594 atomic regions from SNP 123021 to 123621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,740 DEBUG Processing 535/659 atomic regions from SNP 160487 to 161087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,806 DEBUG Processing 127/558 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,917 DEBUG Processing 412/594 atomic regions from SNP 123321 to 123921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,941 DEBUG Processing 536/659 atomic regions from SNP 160787 to 161387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:21,985 DEBUG Processing 128/558 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,106 DEBUG Processing 413/594 atomic regions from SNP 123621 to 124221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,166 DEBUG Processing 537/659 atomic regions from SNP 161087 to 161687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,167 DEBUG Processing 129/558 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,293 DEBUG Processing 414/594 atomic regions from SNP 123921 to 124521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,345 DEBUG Processing 130/558 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,386 DEBUG Processing 538/659 atomic regions from SNP 161387 to 161987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,480 DEBUG Processing 415/594 atomic regions from SNP 124221 to 124821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,523 DEBUG Processing 131/558 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,585 DEBUG Processing 539/659 atomic regions from SNP 161687 to 162287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,672 DEBUG Processing 416/594 atomic regions from SNP 124521 to 125121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,700 DEBUG Processing 132/558 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,783 DEBUG Processing 540/659 atomic regions from SNP 161987 to 162587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:22,880 DEBUG Processing 133/558 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,889 DEBUG Processing 417/594 atomic regions from SNP 124821 to 125421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,010 DEBUG Processing 541/659 atomic regions from SNP 162287 to 162887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,064 DEBUG Processing 134/558 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,082 DEBUG Processing 418/594 atomic regions from SNP 125121 to 125721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,231 DEBUG Processing 542/659 atomic regions from SNP 162587 to 163187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,250 DEBUG Processing 135/558 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,273 DEBUG Processing 419/594 atomic regions from SNP 125421 to 126021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,437 DEBUG Processing 136/558 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,459 DEBUG Processing 543/659 atomic regions from SNP 162887 to 163487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,465 DEBUG Processing 420/594 atomic regions from SNP 125721 to 126321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,620 DEBUG Processing 137/558 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,659 DEBUG Processing 421/594 atomic regions from SNP 126021 to 126621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,676 DEBUG Processing 544/659 atomic regions from SNP 163187 to 163787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:23,825 DEBUG Processing 138/558 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,864 DEBUG Processing 422/594 atomic regions from SNP 126321 to 126921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,909 DEBUG Processing 545/659 atomic regions from SNP 163487 to 164087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,013 DEBUG Processing 139/558 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,089 DEBUG Processing 423/594 atomic regions from SNP 126621 to 127221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,126 DEBUG Processing 546/659 atomic regions from SNP 163787 to 164387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,198 DEBUG Processing 140/558 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,320 DEBUG Processing 424/594 atomic regions from SNP 126921 to 127521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,350 DEBUG Processing 547/659 atomic regions from SNP 164087 to 164687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,386 DEBUG Processing 141/558 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,552 DEBUG Processing 425/594 atomic regions from SNP 127221 to 127821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,578 DEBUG Processing 142/558 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,589 DEBUG Processing 548/659 atomic regions from SNP 164387 to 164987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,762 DEBUG Processing 143/558 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,785 DEBUG Processing 426/594 atomic regions from SNP 127521 to 128121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,794 DEBUG Processing 549/659 atomic regions from SNP 164687 to 165287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:24,957 DEBUG Processing 144/558 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,002 DEBUG Processing 550/659 atomic regions from SNP 164987 to 165587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,019 DEBUG Processing 427/594 atomic regions from SNP 127821 to 128421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,140 DEBUG Processing 145/558 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,207 DEBUG Processing 551/659 atomic regions from SNP 165287 to 165887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,258 DEBUG Processing 428/594 atomic regions from SNP 128121 to 128721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,324 DEBUG Processing 146/558 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,414 DEBUG Processing 552/659 atomic regions from SNP 165587 to 166187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,490 DEBUG Processing 429/594 atomic regions from SNP 128421 to 129021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,506 DEBUG Processing 147/558 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,639 DEBUG Processing 553/659 atomic regions from SNP 165887 to 166487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,692 DEBUG Processing 148/558 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,724 DEBUG Processing 430/594 atomic regions from SNP 128721 to 129321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,847 DEBUG Subchromosome time: 210.93699755205307, subchromosome SNPs: 211254 2025-01-31 09:58:25,848 DEBUG Estimated BADs: [17.27, 3.45, 0.86, 0.19, 1.73, 0.25, 0.86, 0.29, 1.73, 0.35, 1.73, 8.64, 0.86, 0.29, 0.86, 13.82, 1.73, 5.18, 1.73, 0.58, 3.45, 0.86, 1.73, 12.09, 3.45, 0.43, 1.73, 0.86, 17.27, 3.45, 1.73, 3.45, 0.86, 0.29, 0.86, 3.45, 6.91, 1.73, 5.18, 3.45, 1.73, 0.29, 0.86, 5.18] SNP counts: [148, 6453, 4328, 3002, 2115, 5987, 2033, 3395, 8415, 7768, 6012, 240, 9667, 7174, 11626, 191, 4491, 846, 6557, 3567, 9941, 6290, 4414, 2004, 1926, 950, 3068, 2395, 170, 8787, 5627, 12362, 2384, 4207, 1502, 5114, 3890, 2403, 3902, 11397, 3654, 3237, 4954, 12661] SNP IDs counts: [148, 6453, 4328, 3002, 2115, 5987, 2033, 3395, 8415, 7768, 6012, 240, 9667, 7174, 11626, 191, 4491, 846, 6557, 3567, 9941, 6290, 4414, 2004, 1926, 950, 3068, 2395, 170, 8787, 5627, 12362, 2384, 4207, 1502, 5114, 3890, 2403, 3902, 11397, 3654, 3237, 4954, 12661] Critical gap: 594071bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.72Mbp, 9.26Mbp, 11.12Mbp, 12.36Mbp, 16.09Mbp, 17.29Mbp, 19.36Mbp, 24.09Mbp, 28.73Mbp, 32.19Mbp, 32.33Mbp, 37.75Mbp, 42.10Mbp, 48.77Mbp, 48.88Mbp, 51.51Mbp, 51.97Mbp, 55.55Mbp, 57.62Mbp, 63.08Mbp, 66.56Mbp, 68.97Mbp, 70.03Mbp, 71.08Mbp, 71.67Mbp, 73.33Mbp, 74.83Mbp, 74.93Mbp, 79.66Mbp, 82.75Mbp, 89.47Mbp, 90.81Mbp, 93.28Mbp, 94.13Mbp, 96.85Mbp, 98.92Mbp, 100.28Mbp, 102.37Mbp, 108.57Mbp, 110.58Mbp, 112.43Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:58:25,848 DEBUG chr11 time: 210.93762804602738 s 2025-01-31 09:58:25,849 DEBUG Processing 554/659 atomic regions from SNP 166187 to 166787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:25,877 DEBUG Processing 149/558 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,935 DEBUG Processing 431/594 atomic regions from SNP 129021 to 129621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,976 DEBUG chr11: Fitting background model for 44 segments 2025-01-31 09:58:26,055 DEBUG Processing 555/659 atomic regions from SNP 166487 to 167087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,061 DEBUG Processing 150/558 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,159 DEBUG Processing 432/594 atomic regions from SNP 129321 to 129921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,254 DEBUG Processing 151/558 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,293 DEBUG Processing 556/659 atomic regions from SNP 166787 to 167387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,387 DEBUG Processing 433/594 atomic regions from SNP 129621 to 130221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,441 DEBUG Processing 152/558 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,520 DEBUG Processing 557/659 atomic regions from SNP 167087 to 167687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,594 DEBUG Processing 434/594 atomic regions from SNP 129921 to 130521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,627 DEBUG Processing 153/558 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,758 DEBUG Processing 558/659 atomic regions from SNP 167387 to 167987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:26,810 DEBUG Processing 154/558 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,818 DEBUG Processing 435/594 atomic regions from SNP 130221 to 130821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,967 DEBUG Processing 559/659 atomic regions from SNP 167687 to 168287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,001 DEBUG Processing 155/558 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,053 DEBUG Processing 436/594 atomic regions from SNP 130521 to 131121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,183 DEBUG Processing 560/659 atomic regions from SNP 167987 to 168587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,186 DEBUG Processing 156/558 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,268 DEBUG Processing 437/594 atomic regions from SNP 130821 to 131421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,370 DEBUG Processing 157/558 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,386 DEBUG Processing 561/659 atomic regions from SNP 168287 to 168887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,504 DEBUG Processing 438/594 atomic regions from SNP 131121 to 131721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,555 DEBUG Processing 158/558 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,617 DEBUG Processing 562/659 atomic regions from SNP 168587 to 169187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,741 DEBUG Processing 439/594 atomic regions from SNP 131421 to 132021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,743 DEBUG Processing 159/558 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,830 DEBUG Processing 563/659 atomic regions from SNP 168887 to 169487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:27,934 DEBUG Processing 160/558 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,975 DEBUG Processing 440/594 atomic regions from SNP 131721 to 132321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,038 DEBUG Processing 564/659 atomic regions from SNP 169187 to 169787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,119 DEBUG Processing 161/558 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,207 DEBUG Processing 441/594 atomic regions from SNP 132021 to 132621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,250 DEBUG Processing 565/659 atomic regions from SNP 169487 to 170087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,312 DEBUG Processing 162/558 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,444 DEBUG Processing 442/594 atomic regions from SNP 132321 to 132921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,465 DEBUG Processing 566/659 atomic regions from SNP 169787 to 170387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,523 DEBUG Processing 163/558 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,671 DEBUG Processing 567/659 atomic regions from SNP 170087 to 170687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,687 DEBUG Processing 443/594 atomic regions from SNP 132621 to 133221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,718 DEBUG Processing 164/558 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,874 DEBUG Processing 568/659 atomic regions from SNP 170387 to 170987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:28,912 DEBUG Processing 165/558 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,919 DEBUG Processing 444/594 atomic regions from SNP 132921 to 133521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,083 DEBUG Processing 569/659 atomic regions from SNP 170687 to 171287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,115 DEBUG Processing 166/558 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,159 DEBUG Processing 445/594 atomic regions from SNP 133221 to 133821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,212 DEBUG Subchromosome time: 174.24852588190697, subchromosome SNPs: 201949 2025-01-31 09:58:29,213 DEBUG Estimated BADs: [0.76, 7.58, 1.52, 13.64, 0.38, 15.16, 3.03, 0.25, 1.52, 4.55, 1.52, 4.55, 1.52, 3.03, 1.52, 6.06, 1.52, 3.03, 0.76, 3.03, 1.52, 3.03, 1.52, 0.76, 3.03, 0.38, 15.16, 1.52, 9.10, 0.76, 9.10, 0.76, 0.30, 0.76, 3.03, 1.52, 3.03, 1.52, 0.76, 4.55] SNP counts: [30342, 389, 595, 552, 1677, 918, 2580, 4773, 10201, 617, 6394, 1505, 8283, 11422, 8908, 2187, 4548, 5341, 2739, 2384, 11093, 4777, 3017, 2572, 737, 3898, 98, 1255, 293, 3377, 163, 2901, 5415, 3589, 19972, 17740, 3859, 2605, 7380, 853] SNP IDs counts: [30342, 389, 595, 552, 1677, 918, 2580, 4773, 10201, 617, 6394, 1505, 8283, 11422, 8908, 2187, 4548, 5341, 2739, 2384, 11093, 4777, 3017, 2572, 737, 3898, 98, 1255, 293, 3377, 163, 2901, 5415, 3589, 19972, 17740, 3859, 2605, 7380, 853] Critical gap: 599590bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 21.37Mbp, 21.71Mbp, 22.05Mbp, 23.26Mbp, 23.77Mbp, 25.17Mbp, 28.06Mbp, 33.93Mbp, 34.27Mbp, 37.82Mbp, 38.61Mbp, 43.15Mbp, 49.21Mbp, 54.44Mbp, 55.60Mbp, 58.01Mbp, 60.85Mbp, 63.03Mbp, 64.30Mbp, 72.26Mbp, 74.89Mbp, 76.62Mbp, 78.16Mbp, 78.59Mbp, 80.88Mbp, 80.93Mbp, 81.63Mbp, 81.79Mbp, 83.70Mbp, 83.78Mbp, 85.45Mbp, 88.82Mbp, 90.84Mbp, 101.77Mbp, 111.68Mbp, 113.78Mbp, 115.17Mbp, 119.39Mbp, 120.42Mbp] 2025-01-31 09:58:29,213 DEBUG chr13 time: 174.2490189539967 s 2025-01-31 09:58:29,294 DEBUG Processing 570/659 atomic regions from SNP 170987 to 171587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,325 DEBUG Processing 167/558 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,343 DEBUG chr13: Fitting background model for 40 segments 2025-01-31 09:58:29,394 DEBUG Processing 446/594 atomic regions from SNP 133521 to 134121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,525 DEBUG Processing 571/659 atomic regions from SNP 171287 to 171887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,537 DEBUG Processing 168/558 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,637 DEBUG Processing 447/594 atomic regions from SNP 133821 to 134421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,751 DEBUG Processing 169/558 atomic regions from SNP 50568 to 51168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,758 DEBUG Processing 572/659 atomic regions from SNP 171587 to 172187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:29,884 DEBUG Processing 448/594 atomic regions from SNP 134121 to 134721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,964 DEBUG Processing 170/558 atomic regions from SNP 50868 to 51468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,975 DEBUG Processing 573/659 atomic regions from SNP 171887 to 172487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,131 DEBUG Processing 449/594 atomic regions from SNP 134421 to 135021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,161 DEBUG Processing 171/558 atomic regions from SNP 51168 to 51768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,192 DEBUG Processing 574/659 atomic regions from SNP 172187 to 172787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,369 DEBUG Processing 172/558 atomic regions from SNP 51468 to 52068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,370 DEBUG Processing 450/594 atomic regions from SNP 134721 to 135321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,420 DEBUG Processing 575/659 atomic regions from SNP 172487 to 173087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,580 DEBUG Processing 173/558 atomic regions from SNP 51768 to 52368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,607 DEBUG Processing 451/594 atomic regions from SNP 135021 to 135621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,659 DEBUG Processing 576/659 atomic regions from SNP 172787 to 173387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:30,795 DEBUG Processing 174/558 atomic regions from SNP 52068 to 52668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,826 DEBUG Processing 452/594 atomic regions from SNP 135321 to 135921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,899 DEBUG Processing 577/659 atomic regions from SNP 173087 to 173687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,007 DEBUG Processing 175/558 atomic regions from SNP 52368 to 52968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,058 DEBUG Processing 453/594 atomic regions from SNP 135621 to 136221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,124 DEBUG Processing 578/659 atomic regions from SNP 173387 to 173987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,227 DEBUG Processing 176/558 atomic regions from SNP 52668 to 53268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,281 DEBUG Processing 454/594 atomic regions from SNP 135921 to 136521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,328 DEBUG Processing 579/659 atomic regions from SNP 173687 to 174287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,441 DEBUG Processing 177/558 atomic regions from SNP 52968 to 53568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,514 DEBUG Processing 455/594 atomic regions from SNP 136221 to 136821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,538 DEBUG Processing 580/659 atomic regions from SNP 173987 to 174587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,673 DEBUG Processing 178/558 atomic regions from SNP 53268 to 53868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,729 DEBUG Processing 456/594 atomic regions from SNP 136521 to 137121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,749 DEBUG Processing 581/659 atomic regions from SNP 174287 to 174887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:31,882 DEBUG Processing 179/558 atomic regions from SNP 53568 to 54168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,942 DEBUG Processing 457/594 atomic regions from SNP 136821 to 137421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:31,956 DEBUG Processing 582/659 atomic regions from SNP 174587 to 175187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,084 DEBUG Processing 180/558 atomic regions from SNP 53868 to 54468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,168 DEBUG Processing 583/659 atomic regions from SNP 174887 to 175487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,175 DEBUG Processing 458/594 atomic regions from SNP 137121 to 137721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,279 DEBUG Processing 181/558 atomic regions from SNP 54168 to 54768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,372 DEBUG Processing 584/659 atomic regions from SNP 175187 to 175787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,409 DEBUG Processing 459/594 atomic regions from SNP 137421 to 138021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,461 DEBUG Processing 182/558 atomic regions from SNP 54468 to 55068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,574 DEBUG Processing 585/659 atomic regions from SNP 175487 to 176087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,645 DEBUG Processing 183/558 atomic regions from SNP 54768 to 55368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,653 DEBUG Processing 460/594 atomic regions from SNP 137721 to 138321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,778 DEBUG Processing 586/659 atomic regions from SNP 175787 to 176387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:32,837 DEBUG Processing 184/558 atomic regions from SNP 55068 to 55668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,902 DEBUG Processing 461/594 atomic regions from SNP 138021 to 138621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:32,978 DEBUG Processing 587/659 atomic regions from SNP 176087 to 176687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,034 DEBUG Processing 185/558 atomic regions from SNP 55368 to 55968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,126 DEBUG Processing 462/594 atomic regions from SNP 138321 to 138921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,175 DEBUG Processing 588/659 atomic regions from SNP 176387 to 176987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,215 DEBUG Processing 186/558 atomic regions from SNP 55668 to 56268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,370 DEBUG Processing 463/594 atomic regions from SNP 138621 to 139221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,379 DEBUG Processing 589/659 atomic regions from SNP 176687 to 177287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,400 DEBUG Processing 187/558 atomic regions from SNP 55968 to 56568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,583 DEBUG Processing 590/659 atomic regions from SNP 176987 to 177587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,587 DEBUG Processing 188/558 atomic regions from SNP 56268 to 56868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,596 DEBUG Processing 464/594 atomic regions from SNP 138921 to 139521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,771 DEBUG Processing 189/558 atomic regions from SNP 56568 to 57168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,812 DEBUG Processing 465/594 atomic regions from SNP 139221 to 139821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:33,816 DEBUG Processing 591/659 atomic regions from SNP 177287 to 177887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:33,953 DEBUG Processing 190/558 atomic regions from SNP 56868 to 57468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,011 DEBUG Processing 466/594 atomic regions from SNP 139521 to 140121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,031 DEBUG Processing 592/659 atomic regions from SNP 177587 to 178187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,129 DEBUG Processing 191/558 atomic regions from SNP 57168 to 57768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,223 DEBUG Processing 467/594 atomic regions from SNP 139821 to 140421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,229 DEBUG Processing 593/659 atomic regions from SNP 177887 to 178487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,308 DEBUG Processing 192/558 atomic regions from SNP 57468 to 58068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,429 DEBUG Processing 594/659 atomic regions from SNP 178187 to 178787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,453 DEBUG Processing 468/594 atomic regions from SNP 140121 to 140721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,491 DEBUG Processing 193/558 atomic regions from SNP 57768 to 58368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,649 DEBUG Processing 595/659 atomic regions from SNP 178487 to 179087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,672 DEBUG Processing 469/594 atomic regions from SNP 140421 to 141021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:34,678 DEBUG Processing 194/558 atomic regions from SNP 58068 to 58668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,863 DEBUG Processing 195/558 atomic regions from SNP 58368 to 58968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,866 DEBUG Processing 596/659 atomic regions from SNP 178787 to 179387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:34,888 DEBUG Processing 470/594 atomic regions from SNP 140721 to 141321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,068 DEBUG Processing 196/558 atomic regions from SNP 58668 to 59268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,069 DEBUG Processing 597/659 atomic regions from SNP 179087 to 179687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,116 DEBUG Processing 471/594 atomic regions from SNP 141021 to 141621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,271 DEBUG Processing 598/659 atomic regions from SNP 179387 to 179987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,277 DEBUG Processing 197/558 atomic regions from SNP 58968 to 59568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,327 DEBUG Processing 472/594 atomic regions from SNP 141321 to 141921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,470 DEBUG Processing 198/558 atomic regions from SNP 59268 to 59868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,475 DEBUG Processing 599/659 atomic regions from SNP 179687 to 180287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,534 DEBUG Processing 473/594 atomic regions from SNP 141621 to 142221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,657 DEBUG Processing 199/558 atomic regions from SNP 59568 to 60168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,679 DEBUG Processing 600/659 atomic regions from SNP 179987 to 180587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,745 DEBUG Processing 474/594 atomic regions from SNP 141921 to 142521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:35,837 DEBUG Processing 200/558 atomic regions from SNP 59868 to 60468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:35,880 DEBUG Processing 601/659 atomic regions from SNP 180287 to 180887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:35,973 DEBUG Processing 475/594 atomic regions from SNP 142221 to 142821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,025 DEBUG Processing 201/558 atomic regions from SNP 60168 to 60768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,083 DEBUG Processing 602/659 atomic regions from SNP 180587 to 181187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,208 DEBUG Processing 476/594 atomic regions from SNP 142521 to 143121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,232 DEBUG Processing 202/558 atomic regions from SNP 60468 to 61068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,283 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:58:36,285 DEBUG chr17: Signal quantile: 0.984. signal threshold: 12. Best RMSEA: 0.009 2025-01-31 09:58:36,322 DEBUG Processing 603/659 atomic regions from SNP 180887 to 181487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,423 DEBUG Processing 203/558 atomic regions from SNP 60768 to 61368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,429 DEBUG Processing 477/594 atomic regions from SNP 142821 to 143421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,521 DEBUG Processing 604/659 atomic regions from SNP 181187 to 181787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,602 DEBUG Processing 204/558 atomic regions from SNP 61068 to 61668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,656 DEBUG Processing 478/594 atomic regions from SNP 143121 to 143721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,744 DEBUG Processing 605/659 atomic regions from SNP 181487 to 182087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:36,788 DEBUG Processing 205/558 atomic regions from SNP 61368 to 61968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,880 DEBUG Processing 479/594 atomic regions from SNP 143421 to 144021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:36,971 DEBUG Processing 206/558 atomic regions from SNP 61668 to 62268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:36,984 DEBUG Processing 606/659 atomic regions from SNP 181787 to 182387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,108 DEBUG Processing 480/594 atomic regions from SNP 143721 to 144321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,197 DEBUG Processing 207/558 atomic regions from SNP 61968 to 62568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,262 DEBUG Processing 607/659 atomic regions from SNP 182087 to 182687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,383 DEBUG Processing 481/594 atomic regions from SNP 144021 to 144621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,437 DEBUG Processing 208/558 atomic regions from SNP 62268 to 62868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,523 DEBUG Processing 608/659 atomic regions from SNP 182387 to 182987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,582 DEBUG Processing 482/594 atomic regions from SNP 144321 to 144921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,651 DEBUG Processing 209/558 atomic regions from SNP 62568 to 63168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,761 DEBUG Processing 609/659 atomic regions from SNP 182687 to 183287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:37,786 DEBUG Processing 483/594 atomic regions from SNP 144621 to 145221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:37,855 DEBUG Processing 210/558 atomic regions from SNP 62868 to 63468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:37,990 DEBUG Processing 610/659 atomic regions from SNP 182987 to 183587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,010 DEBUG Processing 484/594 atomic regions from SNP 144921 to 145521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,054 DEBUG Processing 211/558 atomic regions from SNP 63168 to 63768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,155 DEBUG chr17 total SNP count: 156476 2025-01-31 09:58:38,155 DEBUG chr17 length: 94987271 2025-01-31 09:58:38,155 DEBUG ----------------------------------------- 2025-01-31 09:58:38,156 INFO Processing SNPs in chr17 2025-01-31 09:58:38,226 DEBUG Processing 611/659 atomic regions from SNP 183287 to 183887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,239 DEBUG Processing 485/594 atomic regions from SNP 145221 to 145821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,261 DEBUG Processing 212/558 atomic regions from SNP 63468 to 64068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,310 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 156476)] 2025-01-31 09:58:38,416 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:38,449 DEBUG Processing 486/594 atomic regions from SNP 145521 to 146121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,473 DEBUG Processing 612/659 atomic regions from SNP 183587 to 184187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,476 DEBUG Processing 213/558 atomic regions from SNP 63768 to 64368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,654 DEBUG Processing 487/594 atomic regions from SNP 145821 to 146421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,693 DEBUG Processing 214/558 atomic regions from SNP 64068 to 64668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,717 DEBUG Processing 613/659 atomic regions from SNP 183887 to 184487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:38,856 DEBUG Processing 488/594 atomic regions from SNP 146121 to 146721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:38,901 DEBUG Processing 215/558 atomic regions from SNP 64368 to 64968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:38,953 DEBUG Processing 614/659 atomic regions from SNP 184187 to 184787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,058 DEBUG Processing 489/594 atomic regions from SNP 146421 to 147021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,085 DEBUG Processing 216/558 atomic regions from SNP 64668 to 65268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,173 DEBUG Processing 615/659 atomic regions from SNP 184487 to 185087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,257 DEBUG Processing 490/594 atomic regions from SNP 146721 to 147321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,270 DEBUG Processing 217/558 atomic regions from SNP 64968 to 65568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,393 DEBUG Processing 616/659 atomic regions from SNP 184787 to 185387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,449 DEBUG Processing 218/558 atomic regions from SNP 65268 to 65868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,457 DEBUG Processing 491/594 atomic regions from SNP 147021 to 147621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,610 DEBUG Processing 617/659 atomic regions from SNP 185087 to 185687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,632 DEBUG Processing 219/558 atomic regions from SNP 65568 to 66168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,655 DEBUG Processing 492/594 atomic regions from SNP 147321 to 147921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,815 DEBUG Processing 220/558 atomic regions from SNP 65868 to 66468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:39,829 DEBUG Processing 618/659 atomic regions from SNP 185387 to 185987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:39,854 DEBUG Processing 493/594 atomic regions from SNP 147621 to 148221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:39,999 DEBUG Processing 221/558 atomic regions from SNP 66168 to 66768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,056 DEBUG Processing 494/594 atomic regions from SNP 147921 to 148521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,066 DEBUG Processing 619/659 atomic regions from SNP 185687 to 186287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,181 DEBUG Processing 222/558 atomic regions from SNP 66468 to 67068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,255 DEBUG Processing 495/594 atomic regions from SNP 148221 to 148821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,301 DEBUG Processing 620/659 atomic regions from SNP 185987 to 186587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,363 DEBUG Processing 223/558 atomic regions from SNP 66768 to 67368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,446 DEBUG Processing 496/594 atomic regions from SNP 148521 to 149121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,534 DEBUG Processing 621/659 atomic regions from SNP 186287 to 186887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,542 DEBUG Processing 224/558 atomic regions from SNP 67068 to 67668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,662 DEBUG Processing 497/594 atomic regions from SNP 148821 to 149421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,733 DEBUG Processing 225/558 atomic regions from SNP 67368 to 67968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,777 DEBUG Processing 622/659 atomic regions from SNP 186587 to 187187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:40,862 DEBUG Processing 498/594 atomic regions from SNP 149121 to 149721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:40,914 DEBUG Processing 226/558 atomic regions from SNP 67668 to 68268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:40,998 DEBUG Processing 623/659 atomic regions from SNP 186887 to 187487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,059 DEBUG Processing 499/594 atomic regions from SNP 149421 to 150021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,095 DEBUG Processing 227/558 atomic regions from SNP 67968 to 68568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,198 DEBUG Processing 624/659 atomic regions from SNP 187187 to 187787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,259 DEBUG Processing 500/594 atomic regions from SNP 149721 to 150321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,276 DEBUG Processing 228/558 atomic regions from SNP 68268 to 68868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,397 DEBUG Processing 625/659 atomic regions from SNP 187487 to 188087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,457 DEBUG Processing 229/558 atomic regions from SNP 68568 to 69168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,458 DEBUG Processing 501/594 atomic regions from SNP 150021 to 150621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,595 DEBUG Processing 626/659 atomic regions from SNP 187787 to 188387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,636 DEBUG Processing 230/558 atomic regions from SNP 68868 to 69468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,655 DEBUG Processing 502/594 atomic regions from SNP 150321 to 150921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:41,795 DEBUG Processing 627/659 atomic regions from SNP 188087 to 188687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:41,818 DEBUG Processing 231/558 atomic regions from SNP 69168 to 69768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:41,868 DEBUG Processing 503/594 atomic regions from SNP 150621 to 151221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,000 DEBUG Processing 628/659 atomic regions from SNP 188387 to 188987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,005 DEBUG Processing 232/558 atomic regions from SNP 69468 to 70068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,102 DEBUG Processing 504/594 atomic regions from SNP 150921 to 151521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,190 DEBUG Processing 233/558 atomic regions from SNP 69768 to 70368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,205 DEBUG Processing 629/659 atomic regions from SNP 188687 to 189287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,316 DEBUG Processing 505/594 atomic regions from SNP 151221 to 151821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,374 DEBUG Processing 234/558 atomic regions from SNP 70068 to 70668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,408 DEBUG Processing 630/659 atomic regions from SNP 188987 to 189587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,545 DEBUG Processing 506/594 atomic regions from SNP 151521 to 152121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,559 DEBUG Processing 235/558 atomic regions from SNP 70368 to 70968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,610 DEBUG Processing 631/659 atomic regions from SNP 189287 to 189887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,742 DEBUG Processing 236/558 atomic regions from SNP 70668 to 71268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:42,775 DEBUG Processing 507/594 atomic regions from SNP 151821 to 152421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:42,818 DEBUG Processing 632/659 atomic regions from SNP 189587 to 190187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:42,928 DEBUG Processing 237/558 atomic regions from SNP 70968 to 71568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,009 DEBUG Processing 508/594 atomic regions from SNP 152121 to 152721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,047 DEBUG Processing 633/659 atomic regions from SNP 189887 to 190487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,177 DEBUG Processing 238/558 atomic regions from SNP 71268 to 71868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,290 DEBUG Processing 509/594 atomic regions from SNP 152421 to 153021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,339 DEBUG Processing 634/659 atomic regions from SNP 190187 to 190787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,442 DEBUG Processing 239/558 atomic regions from SNP 71568 to 72168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,562 DEBUG Processing 510/594 atomic regions from SNP 152721 to 153321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,628 DEBUG Processing 635/659 atomic regions from SNP 190487 to 191087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,702 DEBUG Processing 240/558 atomic regions from SNP 71868 to 72468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:43,775 DEBUG Processing 511/594 atomic regions from SNP 153021 to 153621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:43,833 DEBUG Processing 636/659 atomic regions from SNP 190787 to 191387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:43,929 DEBUG Processing 241/558 atomic regions from SNP 72168 to 72768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,049 DEBUG Processing 512/594 atomic regions from SNP 153321 to 153921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,079 DEBUG Processing 637/659 atomic regions from SNP 191087 to 191687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,112 DEBUG Processing 242/558 atomic regions from SNP 72468 to 73068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,316 DEBUG Processing 513/594 atomic regions from SNP 153621 to 154221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,365 DEBUG Processing 243/558 atomic regions from SNP 72768 to 73368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,376 DEBUG Processing 638/659 atomic regions from SNP 191387 to 191987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,567 DEBUG Processing 514/594 atomic regions from SNP 153921 to 154521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,591 DEBUG Processing 244/558 atomic regions from SNP 73068 to 73668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,638 DEBUG Processing 639/659 atomic regions from SNP 191687 to 192287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:44,817 DEBUG Processing 515/594 atomic regions from SNP 154221 to 154821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:44,838 DEBUG Processing 245/558 atomic regions from SNP 73368 to 73968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:44,929 DEBUG Processing 640/659 atomic regions from SNP 191987 to 192587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,034 DEBUG Processing 516/594 atomic regions from SNP 154521 to 155121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,066 DEBUG Processing 246/558 atomic regions from SNP 73668 to 74268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,209 DEBUG Processing 641/659 atomic regions from SNP 192287 to 192887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,319 DEBUG Processing 517/594 atomic regions from SNP 154821 to 155421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,339 DEBUG Processing 247/558 atomic regions from SNP 73968 to 74568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,424 DEBUG Processing 642/659 atomic regions from SNP 192587 to 193187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,594 DEBUG Processing 518/594 atomic regions from SNP 155121 to 155721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,607 DEBUG Processing 248/558 atomic regions from SNP 74268 to 74868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,705 DEBUG Processing 643/659 atomic regions from SNP 192887 to 193487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:45,825 DEBUG Processing 249/558 atomic regions from SNP 74568 to 75168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:45,831 DEBUG Processing 519/594 atomic regions from SNP 155421 to 156021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:45,925 DEBUG Processing 644/659 atomic regions from SNP 193187 to 193787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,056 DEBUG Processing 250/558 atomic regions from SNP 74868 to 75468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,089 DEBUG Processing 520/594 atomic regions from SNP 155721 to 156321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,215 DEBUG Processing 645/659 atomic regions from SNP 193487 to 194087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,315 DEBUG Processing 251/558 atomic regions from SNP 75168 to 75768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,349 DEBUG Processing 521/594 atomic regions from SNP 156021 to 156621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,494 DEBUG Processing 646/659 atomic regions from SNP 193787 to 194387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,572 DEBUG Processing 252/558 atomic regions from SNP 75468 to 76068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,623 DEBUG Processing 522/594 atomic regions from SNP 156321 to 156921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,749 DEBUG Processing 647/659 atomic regions from SNP 194087 to 194687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:46,782 DEBUG Processing 253/558 atomic regions from SNP 75768 to 76368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:46,835 DEBUG Processing 523/594 atomic regions from SNP 156621 to 157221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:46,985 DEBUG Processing 648/659 atomic regions from SNP 194387 to 194987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,026 DEBUG Processing 254/558 atomic regions from SNP 76068 to 76668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,083 DEBUG Processing 524/594 atomic regions from SNP 156921 to 157521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,264 DEBUG Processing 649/659 atomic regions from SNP 194687 to 195287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,296 DEBUG Processing 255/558 atomic regions from SNP 76368 to 76968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,352 DEBUG Processing 525/594 atomic regions from SNP 157221 to 157821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,546 DEBUG Processing 650/659 atomic regions from SNP 194987 to 195587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,565 DEBUG Processing 256/558 atomic regions from SNP 76668 to 77268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,618 DEBUG Processing 526/594 atomic regions from SNP 157521 to 158121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:47,831 DEBUG Processing 257/558 atomic regions from SNP 76968 to 77568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:47,858 DEBUG Processing 651/659 atomic regions from SNP 195287 to 195887 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:47,886 DEBUG Processing 527/594 atomic regions from SNP 157821 to 158421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,098 DEBUG Processing 258/558 atomic regions from SNP 77268 to 77868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,153 DEBUG Processing 528/594 atomic regions from SNP 158121 to 158721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,154 DEBUG Processing 652/659 atomic regions from SNP 195587 to 196187 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,347 DEBUG Processing 259/558 atomic regions from SNP 77568 to 78168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,414 DEBUG Processing 529/594 atomic regions from SNP 158421 to 159021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,436 DEBUG Processing 653/659 atomic regions from SNP 195887 to 196487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,613 DEBUG Processing 260/558 atomic regions from SNP 77868 to 78468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,678 DEBUG Processing 530/594 atomic regions from SNP 158721 to 159321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,702 DEBUG Processing 654/659 atomic regions from SNP 196187 to 196787 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:48,855 DEBUG Processing 261/558 atomic regions from SNP 78168 to 78768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:48,953 DEBUG Processing 531/594 atomic regions from SNP 159021 to 159621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:48,970 DEBUG Processing 655/659 atomic regions from SNP 196487 to 197087 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,093 DEBUG Processing 262/558 atomic regions from SNP 78468 to 79068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,221 DEBUG Processing 532/594 atomic regions from SNP 159321 to 159921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,243 DEBUG Processing 656/659 atomic regions from SNP 196787 to 197387 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,320 DEBUG Processing 263/558 atomic regions from SNP 78768 to 79368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,482 DEBUG Processing 533/594 atomic regions from SNP 159621 to 160221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,529 DEBUG Processing 657/659 atomic regions from SNP 197087 to 197687 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,595 DEBUG Processing 264/558 atomic regions from SNP 79068 to 79668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,717 DEBUG Processing 534/594 atomic regions from SNP 159921 to 160521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,765 DEBUG Processing 658/659 atomic regions from SNP 197387 to 197987 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:49,786 DEBUG Processing 265/558 atomic regions from SNP 79368 to 79968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,906 DEBUG Processing 535/594 atomic regions from SNP 160221 to 160821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:49,988 DEBUG Processing 266/558 atomic regions from SNP 79668 to 80268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:49,995 DEBUG Processing 659/659 atomic regions from SNP 197687 to 198287 for chr12 (subchromosome 1 of 1). 2025-01-31 09:58:50,157 DEBUG Processing 536/594 atomic regions from SNP 160521 to 161121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,191 DEBUG Unique SNPs positions in subchromosome 1: 198288 2025-01-31 09:58:50,247 DEBUG Processing 267/558 atomic regions from SNP 79968 to 80568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,409 DEBUG Processing 537/594 atomic regions from SNP 160821 to 161421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,502 DEBUG Processing 268/558 atomic regions from SNP 80268 to 80868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,665 DEBUG Processing 538/594 atomic regions from SNP 161121 to 161721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:50,751 DEBUG Processing 269/558 atomic regions from SNP 80568 to 81168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:50,928 DEBUG Processing 539/594 atomic regions from SNP 161421 to 162021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,008 DEBUG Processing 270/558 atomic regions from SNP 80868 to 81468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,212 DEBUG Processing 540/594 atomic regions from SNP 161721 to 162321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,294 DEBUG Processing 271/558 atomic regions from SNP 81168 to 81768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,475 DEBUG Processing 541/594 atomic regions from SNP 162021 to 162621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,559 DEBUG Processing 272/558 atomic regions from SNP 81468 to 82068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,735 DEBUG Processing 542/594 atomic regions from SNP 162321 to 162921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:51,823 DEBUG Processing 273/558 atomic regions from SNP 81768 to 82368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:51,994 DEBUG Processing 543/594 atomic regions from SNP 162621 to 163221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,092 DEBUG Processing 274/558 atomic regions from SNP 82068 to 82668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,255 DEBUG Processing 544/594 atomic regions from SNP 162921 to 163521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,361 DEBUG Processing 275/558 atomic regions from SNP 82368 to 82968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,507 DEBUG Processing 545/594 atomic regions from SNP 163221 to 163821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,612 DEBUG Processing 276/558 atomic regions from SNP 82668 to 83268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,765 DEBUG Processing 546/594 atomic regions from SNP 163521 to 164121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:52,891 DEBUG Processing 277/558 atomic regions from SNP 82968 to 83568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:52,981 DEBUG Processing 547/594 atomic regions from SNP 163821 to 164421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,156 DEBUG Processing 278/558 atomic regions from SNP 83268 to 83868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,231 DEBUG Processing 548/594 atomic regions from SNP 164121 to 164721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,438 DEBUG Processing 279/558 atomic regions from SNP 83568 to 84168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,539 DEBUG Processing 549/594 atomic regions from SNP 164421 to 165021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,663 DEBUG Processing 280/558 atomic regions from SNP 83868 to 84468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:53,806 DEBUG Processing 550/594 atomic regions from SNP 164721 to 165321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:53,906 DEBUG Processing 281/558 atomic regions from SNP 84168 to 84768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,076 DEBUG Processing 551/594 atomic regions from SNP 165021 to 165621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,170 DEBUG Processing 282/558 atomic regions from SNP 84468 to 85068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,337 DEBUG Processing 552/594 atomic regions from SNP 165321 to 165921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,423 DEBUG Processing 283/558 atomic regions from SNP 84768 to 85368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,591 DEBUG Processing 553/594 atomic regions from SNP 165621 to 166221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,679 DEBUG Processing 284/558 atomic regions from SNP 85068 to 85668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:54,843 DEBUG Processing 554/594 atomic regions from SNP 165921 to 166521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:54,931 DEBUG Processing 285/558 atomic regions from SNP 85368 to 85968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,093 DEBUG Processing 555/594 atomic regions from SNP 166221 to 166821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,180 DEBUG Processing 286/558 atomic regions from SNP 85668 to 86268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,341 DEBUG Processing 556/594 atomic regions from SNP 166521 to 167121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,431 DEBUG Processing 287/558 atomic regions from SNP 85968 to 86568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,593 DEBUG Processing 557/594 atomic regions from SNP 166821 to 167421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,686 DEBUG Processing 288/558 atomic regions from SNP 86268 to 86868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:55,867 DEBUG Processing 558/594 atomic regions from SNP 167121 to 167721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:55,935 DEBUG Processing 289/558 atomic regions from SNP 86568 to 87168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,133 DEBUG Processing 559/594 atomic regions from SNP 167421 to 168021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,188 DEBUG Processing 290/558 atomic regions from SNP 86868 to 87468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,426 DEBUG Processing 560/594 atomic regions from SNP 167721 to 168321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,464 DEBUG Processing 291/558 atomic regions from SNP 87168 to 87768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,704 DEBUG Processing 561/594 atomic regions from SNP 168021 to 168621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,721 DEBUG Processing 292/558 atomic regions from SNP 87468 to 88068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:56,967 DEBUG Processing 562/594 atomic regions from SNP 168321 to 168921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:56,977 DEBUG Processing 293/558 atomic regions from SNP 87768 to 88368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,141 DEBUG Segmenting atomic regions: 2025-01-31 09:58:57,210 DEBUG Processing 1/520 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,231 DEBUG Processing 294/558 atomic regions from SNP 88068 to 88668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,256 DEBUG Processing 563/594 atomic regions from SNP 168621 to 169221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,470 DEBUG Processing 2/520 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,490 DEBUG Processing 295/558 atomic regions from SNP 88368 to 88968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,548 DEBUG Processing 564/594 atomic regions from SNP 168921 to 169521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,719 DEBUG Processing 3/520 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,744 DEBUG Processing 296/558 atomic regions from SNP 88668 to 89268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:57,844 DEBUG Processing 565/594 atomic regions from SNP 169221 to 169821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:57,974 DEBUG Processing 4/520 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,007 DEBUG Processing 297/558 atomic regions from SNP 88968 to 89568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,156 DEBUG Processing 566/594 atomic regions from SNP 169521 to 170121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,229 DEBUG Processing 5/520 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,271 DEBUG Processing 298/558 atomic regions from SNP 89268 to 89868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,453 DEBUG Processing 567/594 atomic regions from SNP 169821 to 170421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,477 DEBUG Processing 6/520 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,526 DEBUG Processing 299/558 atomic regions from SNP 89568 to 90168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,664 DEBUG Processing 7/520 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,679 DEBUG Processing 568/594 atomic regions from SNP 170121 to 170721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:58,711 DEBUG Processing 300/558 atomic regions from SNP 89868 to 90468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,839 DEBUG Processing 8/520 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,885 DEBUG Processing 301/558 atomic regions from SNP 90168 to 90768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:58,892 DEBUG Processing 569/594 atomic regions from SNP 170421 to 171021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,013 DEBUG Processing 9/520 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,060 DEBUG Processing 302/558 atomic regions from SNP 90468 to 91068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,114 DEBUG Processing 570/594 atomic regions from SNP 170721 to 171321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,189 DEBUG Processing 10/520 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,235 DEBUG Processing 303/558 atomic regions from SNP 90768 to 91368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,318 DEBUG Processing 571/594 atomic regions from SNP 171021 to 171621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,367 DEBUG Processing 11/520 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,411 DEBUG Processing 304/558 atomic regions from SNP 91068 to 91668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,521 DEBUG Processing 572/594 atomic regions from SNP 171321 to 171921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,549 DEBUG Processing 12/520 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,586 DEBUG Processing 305/558 atomic regions from SNP 91368 to 91968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,718 DEBUG Processing 573/594 atomic regions from SNP 171621 to 172221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,753 DEBUG Processing 13/520 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,760 DEBUG Processing 306/558 atomic regions from SNP 91668 to 92268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,931 DEBUG Processing 574/594 atomic regions from SNP 171921 to 172521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:59,935 DEBUG Processing 307/558 atomic regions from SNP 91968 to 92568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:59,939 DEBUG Processing 14/520 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,108 DEBUG Processing 308/558 atomic regions from SNP 92268 to 92868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,124 DEBUG Processing 15/520 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,155 DEBUG Processing 575/594 atomic regions from SNP 172221 to 172821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,280 DEBUG Processing 309/558 atomic regions from SNP 92568 to 93168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,321 DEBUG Processing 16/520 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,369 DEBUG Processing 576/594 atomic regions from SNP 172521 to 173121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,450 DEBUG Processing 310/558 atomic regions from SNP 92868 to 93468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,500 DEBUG Processing 17/520 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,565 DEBUG Processing 577/594 atomic regions from SNP 172821 to 173421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,622 DEBUG Processing 311/558 atomic regions from SNP 93168 to 93768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,702 DEBUG Processing 18/520 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,752 DEBUG Processing 578/594 atomic regions from SNP 173121 to 173721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:00,808 DEBUG Processing 312/558 atomic regions from SNP 93468 to 94068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:00,895 DEBUG Processing 19/520 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,947 DEBUG Processing 579/594 atomic regions from SNP 173421 to 174021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,017 DEBUG Processing 313/558 atomic regions from SNP 93768 to 94368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,078 DEBUG Processing 20/520 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,161 DEBUG Processing 580/594 atomic regions from SNP 173721 to 174321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,216 DEBUG Processing 314/558 atomic regions from SNP 94068 to 94668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,276 DEBUG Processing 21/520 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,360 DEBUG Processing 581/594 atomic regions from SNP 174021 to 174621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,390 DEBUG Processing 315/558 atomic regions from SNP 94368 to 94968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,474 DEBUG Processing 22/520 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,547 DEBUG Processing 582/594 atomic regions from SNP 174321 to 174921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,569 DEBUG Processing 316/558 atomic regions from SNP 94668 to 95268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,650 DEBUG Processing 23/520 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,736 DEBUG Processing 583/594 atomic regions from SNP 174621 to 175221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:01,748 DEBUG Processing 317/558 atomic regions from SNP 94968 to 95568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,826 DEBUG Processing 24/520 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,923 DEBUG Processing 318/558 atomic regions from SNP 95268 to 95868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:01,931 DEBUG Processing 584/594 atomic regions from SNP 174921 to 175521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,003 DEBUG Processing 25/520 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,097 DEBUG Processing 319/558 atomic regions from SNP 95568 to 96168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,146 DEBUG Processing 585/594 atomic regions from SNP 175221 to 175821 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,177 DEBUG Processing 26/520 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,279 DEBUG Processing 320/558 atomic regions from SNP 95868 to 96468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,356 DEBUG Processing 27/520 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,363 DEBUG Processing 586/594 atomic regions from SNP 175521 to 176121 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,455 DEBUG Processing 321/558 atomic regions from SNP 96168 to 96768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,496 DEBUG Subchromosome time: 175.5905694080284, subchromosome SNPs: 198288 2025-01-31 09:59:02,497 DEBUG Estimated BADs: [2.89, 0.48, 1.45, 0.72, 2.89, 0.72, 5.79, 1.45, 0.29, 1.45, 0.72, 0.29, 1.45, 2.89, 1.45, 0.29, 0.72, 2.89, 1.45, 7.23, 2.89, 4.34, 1.45, 0.29, 0.72, 2.89, 14.47, 1.45, 14.47, 1.45, 7.23, 0.48, 1.45] SNP counts: [4048, 2976, 5413, 11665, 2571, 3631, 960, 21206, 4491, 4235, 8148, 3578, 9085, 2776, 7164, 5624, 9877, 8868, 4169, 1065, 11506, 7728, 8101, 9019, 2126, 7254, 144, 3817, 244, 9952, 5431, 3769, 7647] SNP IDs counts: [4048, 2976, 5413, 11665, 2571, 3631, 960, 21206, 4491, 4235, 8148, 3578, 9085, 2776, 7164, 5624, 9877, 8868, 4169, 1065, 11506, 7728, 8101, 9019, 2126, 7254, 144, 3817, 244, 9952, 5431, 3769, 7647] Critical gap: 603580bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.29Mbp, 7.02Mbp, 10.04Mbp, 16.80Mbp, 18.40Mbp, 24.56Mbp, 25.06Mbp, 36.77Mbp, 39.39Mbp, 41.94Mbp, 46.79Mbp, 48.96Mbp, 54.09Mbp, 55.81Mbp, 59.94Mbp, 63.35Mbp, 69.15Mbp, 73.90Mbp, 76.18Mbp, 76.77Mbp, 83.07Mbp, 87.14Mbp, 92.11Mbp, 97.50Mbp, 98.73Mbp, 102.68Mbp, 102.76Mbp, 104.93Mbp, 105.06Mbp, 110.37Mbp, 113.23Mbp, 115.63Mbp, 120.13Mbp] 2025-01-31 09:59:02,497 DEBUG chr12 time: 175.59123923792504 s 2025-01-31 09:59:02,540 DEBUG Processing 28/520 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,589 DEBUG Processing 587/594 atomic regions from SNP 175821 to 176421 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,611 DEBUG chr12: Fitting background model for 33 segments 2025-01-31 09:59:02,635 DEBUG Processing 322/558 atomic regions from SNP 96468 to 97068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,721 DEBUG Processing 29/520 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,805 DEBUG Processing 588/594 atomic regions from SNP 176121 to 176721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:02,810 DEBUG Processing 323/558 atomic regions from SNP 96768 to 97368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:02,898 DEBUG Processing 30/520 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,982 DEBUG Processing 324/558 atomic regions from SNP 97068 to 97668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,010 DEBUG Processing 589/594 atomic regions from SNP 176421 to 177021 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,074 DEBUG Processing 31/520 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,156 DEBUG Processing 325/558 atomic regions from SNP 97368 to 97968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,199 DEBUG Processing 590/594 atomic regions from SNP 176721 to 177321 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,251 DEBUG Processing 32/520 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,332 DEBUG Processing 326/558 atomic regions from SNP 97668 to 98268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,389 DEBUG Processing 591/594 atomic regions from SNP 177021 to 177621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,432 DEBUG Processing 33/520 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,509 DEBUG Processing 327/558 atomic regions from SNP 97968 to 98568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,606 DEBUG Processing 592/594 atomic regions from SNP 177321 to 177921 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,615 DEBUG Processing 34/520 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,714 DEBUG Processing 328/558 atomic regions from SNP 98268 to 98868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,797 DEBUG Processing 35/520 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,825 DEBUG Processing 593/594 atomic regions from SNP 177621 to 178221 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:03,913 DEBUG Processing 329/558 atomic regions from SNP 98568 to 99168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:03,979 DEBUG Processing 36/520 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,014 DEBUG Processing 594/594 atomic regions from SNP 177921 to 178521 for chr15 (subchromosome 1 of 1). 2025-01-31 09:59:04,088 DEBUG Processing 330/558 atomic regions from SNP 98868 to 99468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,129 DEBUG Unique SNPs positions in subchromosome 1: 178522 2025-01-31 09:59:04,161 DEBUG Processing 37/520 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,266 DEBUG Processing 331/558 atomic regions from SNP 99168 to 99768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,338 DEBUG Processing 38/520 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,442 DEBUG Processing 332/558 atomic regions from SNP 99468 to 100068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,520 DEBUG Processing 39/520 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,619 DEBUG Processing 333/558 atomic regions from SNP 99768 to 100368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,700 DEBUG Processing 40/520 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,796 DEBUG Processing 334/558 atomic regions from SNP 100068 to 100668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:04,885 DEBUG Processing 41/520 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,981 DEBUG Processing 335/558 atomic regions from SNP 100368 to 100968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,062 DEBUG Processing 42/520 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,155 DEBUG Processing 336/558 atomic regions from SNP 100668 to 101268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,241 DEBUG Processing 43/520 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,331 DEBUG Processing 337/558 atomic regions from SNP 100968 to 101568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,419 DEBUG Processing 44/520 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,507 DEBUG Processing 338/558 atomic regions from SNP 101268 to 101868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,597 DEBUG Processing 45/520 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,680 DEBUG Processing 339/558 atomic regions from SNP 101568 to 102168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,775 DEBUG Processing 46/520 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,854 DEBUG Processing 340/558 atomic regions from SNP 101868 to 102468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:05,955 DEBUG Processing 47/520 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,031 DEBUG Processing 341/558 atomic regions from SNP 102168 to 102768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,134 DEBUG Processing 48/520 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,205 DEBUG Processing 342/558 atomic regions from SNP 102468 to 103068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,314 DEBUG Processing 49/520 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,381 DEBUG Processing 343/558 atomic regions from SNP 102768 to 103368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,490 DEBUG Processing 50/520 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,554 DEBUG Processing 344/558 atomic regions from SNP 103068 to 103668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,665 DEBUG Processing 51/520 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,728 DEBUG Processing 345/558 atomic regions from SNP 103368 to 103968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:06,840 DEBUG Processing 52/520 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,903 DEBUG Processing 346/558 atomic regions from SNP 103668 to 104268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,020 DEBUG Processing 53/520 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,078 DEBUG Processing 347/558 atomic regions from SNP 103968 to 104568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,194 DEBUG Processing 54/520 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,254 DEBUG Processing 348/558 atomic regions from SNP 104268 to 104868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,384 DEBUG Processing 55/520 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,430 DEBUG Processing 349/558 atomic regions from SNP 104568 to 105168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,579 DEBUG Processing 56/520 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,605 DEBUG Processing 350/558 atomic regions from SNP 104868 to 105468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,755 DEBUG Processing 57/520 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,780 DEBUG Processing 351/558 atomic regions from SNP 105168 to 105768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:07,931 DEBUG Processing 58/520 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,960 DEBUG Processing 352/558 atomic regions from SNP 105468 to 106068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,118 DEBUG Processing 59/520 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,135 DEBUG Processing 353/558 atomic regions from SNP 105768 to 106368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,296 DEBUG Processing 60/520 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,308 DEBUG Processing 354/558 atomic regions from SNP 106068 to 106668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,472 DEBUG Processing 61/520 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,479 DEBUG Processing 355/558 atomic regions from SNP 106368 to 106968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,653 DEBUG Processing 62/520 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,653 DEBUG Processing 356/558 atomic regions from SNP 106668 to 107268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,831 DEBUG Processing 357/558 atomic regions from SNP 106968 to 107568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:08,834 DEBUG Processing 63/520 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,011 DEBUG Processing 358/558 atomic regions from SNP 107268 to 107868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,033 DEBUG Processing 64/520 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,185 DEBUG Processing 359/558 atomic regions from SNP 107568 to 108168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,220 DEBUG Processing 65/520 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,357 DEBUG Processing 360/558 atomic regions from SNP 107868 to 108468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,401 DEBUG Processing 66/520 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,528 DEBUG Processing 361/558 atomic regions from SNP 108168 to 108768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,583 DEBUG Processing 67/520 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,709 DEBUG Processing 362/558 atomic regions from SNP 108468 to 109068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,766 DEBUG Processing 68/520 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,883 DEBUG Processing 363/558 atomic regions from SNP 108768 to 109368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:09,942 DEBUG Processing 69/520 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,055 DEBUG Processing 364/558 atomic regions from SNP 109068 to 109668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,120 DEBUG Processing 70/520 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,228 DEBUG Processing 365/558 atomic regions from SNP 109368 to 109968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,297 DEBUG Processing 71/520 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,400 DEBUG Processing 366/558 atomic regions from SNP 109668 to 110268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,472 DEBUG Processing 72/520 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,572 DEBUG Processing 367/558 atomic regions from SNP 109968 to 110568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,648 DEBUG Processing 73/520 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,747 DEBUG Processing 368/558 atomic regions from SNP 110268 to 110868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,824 DEBUG Processing 74/520 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,919 DEBUG Processing 369/558 atomic regions from SNP 110568 to 111168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:10,999 DEBUG Processing 75/520 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,092 DEBUG Processing 370/558 atomic regions from SNP 110868 to 111468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,179 DEBUG Processing 76/520 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,267 DEBUG Processing 371/558 atomic regions from SNP 111168 to 111768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,357 DEBUG Processing 77/520 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,438 DEBUG Processing 372/558 atomic regions from SNP 111468 to 112068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,533 DEBUG Processing 78/520 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,609 DEBUG Processing 373/558 atomic regions from SNP 111768 to 112368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,707 DEBUG Processing 79/520 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,783 DEBUG Processing 374/558 atomic regions from SNP 112068 to 112668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:11,882 DEBUG Processing 80/520 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,956 DEBUG Processing 375/558 atomic regions from SNP 112368 to 112968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,060 DEBUG Processing 81/520 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,130 DEBUG Processing 376/558 atomic regions from SNP 112668 to 113268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,237 DEBUG Processing 82/520 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,303 DEBUG Processing 377/558 atomic regions from SNP 112968 to 113568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,412 DEBUG Processing 83/520 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,473 DEBUG Processing 378/558 atomic regions from SNP 113268 to 113868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,590 DEBUG Processing 84/520 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,648 DEBUG Processing 379/558 atomic regions from SNP 113568 to 114168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,767 DEBUG Processing 85/520 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,822 DEBUG Processing 380/558 atomic regions from SNP 113868 to 114468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:12,942 DEBUG Processing 86/520 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,994 DEBUG Processing 381/558 atomic regions from SNP 114168 to 114768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,121 DEBUG Processing 87/520 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,168 DEBUG Processing 382/558 atomic regions from SNP 114468 to 115068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,294 DEBUG Processing 88/520 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,339 DEBUG Processing 383/558 atomic regions from SNP 114768 to 115368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,468 DEBUG Processing 89/520 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,512 DEBUG Processing 384/558 atomic regions from SNP 115068 to 115668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,641 DEBUG Processing 90/520 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,684 DEBUG Processing 385/558 atomic regions from SNP 115368 to 115968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,813 DEBUG Processing 91/520 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,857 DEBUG Processing 386/558 atomic regions from SNP 115668 to 116268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:13,985 DEBUG Processing 92/520 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,029 DEBUG Processing 387/558 atomic regions from SNP 115968 to 116568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,158 DEBUG Processing 93/520 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,200 DEBUG Processing 388/558 atomic regions from SNP 116268 to 116868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,332 DEBUG Processing 94/520 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,372 DEBUG Processing 389/558 atomic regions from SNP 116568 to 117168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,505 DEBUG Processing 95/520 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,542 DEBUG Processing 390/558 atomic regions from SNP 116868 to 117468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,676 DEBUG Processing 96/520 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,713 DEBUG Processing 391/558 atomic regions from SNP 117168 to 117768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:14,850 DEBUG Processing 97/520 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,886 DEBUG Processing 392/558 atomic regions from SNP 117468 to 118068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,022 DEBUG Processing 98/520 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,056 DEBUG Processing 393/558 atomic regions from SNP 117768 to 118368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,195 DEBUG Processing 99/520 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,238 DEBUG Processing 394/558 atomic regions from SNP 118068 to 118668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,369 DEBUG Processing 100/520 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,419 DEBUG Processing 395/558 atomic regions from SNP 118368 to 118968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,541 DEBUG Processing 101/520 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,590 DEBUG Processing 396/558 atomic regions from SNP 118668 to 119268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,717 DEBUG Processing 102/520 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,762 DEBUG Processing 397/558 atomic regions from SNP 118968 to 119568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:15,888 DEBUG Processing 103/520 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,936 DEBUG Processing 398/558 atomic regions from SNP 119268 to 119868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,059 DEBUG Processing 104/520 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,109 DEBUG Processing 399/558 atomic regions from SNP 119568 to 120168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,232 DEBUG Processing 105/520 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,282 DEBUG Processing 400/558 atomic regions from SNP 119868 to 120468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,405 DEBUG Processing 106/520 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,455 DEBUG Processing 401/558 atomic regions from SNP 120168 to 120768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,602 DEBUG Processing 107/520 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,626 DEBUG Processing 402/558 atomic regions from SNP 120468 to 121068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,798 DEBUG Processing 403/558 atomic regions from SNP 120768 to 121368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:16,807 DEBUG Processing 108/520 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,973 DEBUG Processing 404/558 atomic regions from SNP 121068 to 121668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,007 DEBUG Processing 109/520 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,146 DEBUG Processing 405/558 atomic regions from SNP 121368 to 121968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,190 DEBUG Processing 110/520 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,326 DEBUG Processing 406/558 atomic regions from SNP 121668 to 122268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,399 DEBUG Processing 111/520 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,501 DEBUG Processing 407/558 atomic regions from SNP 121968 to 122568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,600 DEBUG Processing 112/520 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,677 DEBUG Processing 408/558 atomic regions from SNP 122268 to 122868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:17,807 DEBUG Processing 113/520 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,848 DEBUG Processing 409/558 atomic regions from SNP 122568 to 123168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,022 DEBUG Processing 114/520 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,036 DEBUG Processing 410/558 atomic regions from SNP 122868 to 123468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,211 DEBUG Processing 411/558 atomic regions from SNP 123168 to 123768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,229 DEBUG Processing 115/520 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,317 DEBUG Subchromosome time: 157.9804285140708, subchromosome SNPs: 178522 2025-01-31 09:59:18,317 DEBUG Estimated BADs: [2.25, 6.75, 13.50, 6.75, 11.25, 2.25, 0.38, 2.25, 0.56, 2.25, 0.45, 2.25, 0.56, 2.25, 1.13, 0.25, 1.13, 0.75, 4.50, 1.13, 0.38, 1.13, 11.25, 2.25, 6.75, 4.50, 2.25, 6.75, 0.56, 2.25, 6.75, 1.13] SNP counts: [3389, 5312, 1854, 5220, 2651, 16754, 3932, 870, 1819, 1516, 5686, 917, 3574, 9323, 10208, 8375, 4682, 8892, 3836, 14830, 5580, 2459, 245, 4802, 12168, 4326, 7502, 1800, 3883, 12110, 9191, 816] SNP IDs counts: [3389, 5312, 1854, 5220, 2651, 16754, 3932, 870, 1819, 1516, 5686, 917, 3574, 9323, 10208, 8375, 4682, 8892, 3836, 14830, 5580, 2459, 245, 4802, 12168, 4326, 7502, 1800, 3883, 12110, 9191, 816] Critical gap: 548338bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.09Mbp, 9.14Mbp, 12.08Mbp, 13.49Mbp, 23.16Mbp, 25.55Mbp, 26.00Mbp, 27.04Mbp, 27.87Mbp, 31.18Mbp, 31.67Mbp, 33.80Mbp, 39.12Mbp, 44.91Mbp, 50.08Mbp, 52.74Mbp, 57.83Mbp, 59.88Mbp, 68.45Mbp, 71.73Mbp, 73.06Mbp, 73.19Mbp, 75.86Mbp, 82.38Mbp, 84.74Mbp, 88.73Mbp, 89.70Mbp, 91.89Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:59:18,317 DEBUG chr15 time: 157.9808868430555 s 2025-01-31 09:59:18,392 DEBUG Processing 412/558 atomic regions from SNP 123468 to 124068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,420 DEBUG chr15: Fitting background model for 32 segments 2025-01-31 09:59:18,436 DEBUG Processing 116/520 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,572 DEBUG Processing 413/558 atomic regions from SNP 123768 to 124368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,648 DEBUG Processing 117/520 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,749 DEBUG Processing 414/558 atomic regions from SNP 124068 to 124668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:18,858 DEBUG Processing 118/520 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,933 DEBUG Processing 415/558 atomic regions from SNP 124368 to 124968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,063 DEBUG Processing 119/520 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,107 DEBUG Processing 416/558 atomic regions from SNP 124668 to 125268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,266 DEBUG Processing 120/520 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,278 DEBUG Processing 417/558 atomic regions from SNP 124968 to 125568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,452 DEBUG Processing 418/558 atomic regions from SNP 125268 to 125868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,476 DEBUG Processing 121/520 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,624 DEBUG Processing 419/558 atomic regions from SNP 125568 to 126168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,684 DEBUG Processing 122/520 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,802 DEBUG Processing 420/558 atomic regions from SNP 125868 to 126468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:19,898 DEBUG Processing 123/520 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,975 DEBUG Processing 421/558 atomic regions from SNP 126168 to 126768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,108 DEBUG Processing 124/520 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,151 DEBUG Processing 422/558 atomic regions from SNP 126468 to 127068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,307 DEBUG Processing 125/520 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,330 DEBUG Processing 423/558 atomic regions from SNP 126768 to 127368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,508 DEBUG Processing 424/558 atomic regions from SNP 127068 to 127668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,509 DEBUG Processing 126/520 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,686 DEBUG Processing 425/558 atomic regions from SNP 127368 to 127968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,712 DEBUG Processing 127/520 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,864 DEBUG Processing 426/558 atomic regions from SNP 127668 to 128268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:20,923 DEBUG Processing 128/520 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,041 DEBUG Processing 427/558 atomic regions from SNP 127968 to 128568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,136 DEBUG Processing 129/520 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,216 DEBUG Processing 428/558 atomic regions from SNP 128268 to 128868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,344 DEBUG Processing 130/520 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,391 DEBUG Processing 429/558 atomic regions from SNP 128568 to 129168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,535 DEBUG Processing 131/520 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,577 DEBUG Processing 430/558 atomic regions from SNP 128868 to 129468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,744 DEBUG Processing 132/520 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,755 DEBUG Processing 431/558 atomic regions from SNP 129168 to 129768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,927 DEBUG Processing 432/558 atomic regions from SNP 129468 to 130068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:21,956 DEBUG Processing 133/520 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,103 DEBUG Processing 433/558 atomic regions from SNP 129768 to 130368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,159 DEBUG Processing 134/520 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,300 DEBUG Processing 434/558 atomic regions from SNP 130068 to 130668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,360 DEBUG Processing 135/520 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,472 DEBUG Processing 435/558 atomic regions from SNP 130368 to 130968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,573 DEBUG Processing 136/520 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,645 DEBUG Processing 436/558 atomic regions from SNP 130668 to 131268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,782 DEBUG Processing 137/520 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,819 DEBUG Processing 437/558 atomic regions from SNP 130968 to 131568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:22,974 DEBUG Processing 138/520 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,993 DEBUG Processing 438/558 atomic regions from SNP 131268 to 131868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,166 DEBUG Processing 439/558 atomic regions from SNP 131568 to 132168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,171 DEBUG Processing 139/520 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,335 DEBUG Processing 440/558 atomic regions from SNP 131868 to 132468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,373 DEBUG Processing 140/520 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,506 DEBUG Processing 441/558 atomic regions from SNP 132168 to 132768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,581 DEBUG Processing 141/520 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,679 DEBUG Processing 442/558 atomic regions from SNP 132468 to 133068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:23,788 DEBUG Processing 142/520 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,850 DEBUG Processing 443/558 atomic regions from SNP 132768 to 133368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,013 DEBUG Processing 143/520 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,026 DEBUG Processing 444/558 atomic regions from SNP 133068 to 133668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,202 DEBUG Processing 445/558 atomic regions from SNP 133368 to 133968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,225 DEBUG Processing 144/520 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,380 DEBUG Processing 446/558 atomic regions from SNP 133668 to 134268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,426 DEBUG Processing 145/520 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,555 DEBUG Processing 447/558 atomic regions from SNP 133968 to 134568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,627 DEBUG Processing 146/520 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,730 DEBUG Processing 448/558 atomic regions from SNP 134268 to 134868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:24,822 DEBUG Processing 147/520 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,904 DEBUG Processing 449/558 atomic regions from SNP 134568 to 135168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,012 DEBUG Processing 148/520 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,079 DEBUG Processing 450/558 atomic regions from SNP 134868 to 135468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,206 DEBUG Processing 149/520 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,257 DEBUG Processing 451/558 atomic regions from SNP 135168 to 135768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,386 DEBUG Processing 150/520 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,436 DEBUG Processing 452/558 atomic regions from SNP 135468 to 136068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,568 DEBUG Processing 151/520 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,610 DEBUG Processing 453/558 atomic regions from SNP 135768 to 136368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,748 DEBUG Processing 152/520 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,784 DEBUG Processing 454/558 atomic regions from SNP 136068 to 136668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:25,936 DEBUG Processing 153/520 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,958 DEBUG Processing 455/558 atomic regions from SNP 136368 to 136968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,132 DEBUG Processing 154/520 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,134 DEBUG Processing 456/558 atomic regions from SNP 136668 to 137268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,308 DEBUG Processing 457/558 atomic regions from SNP 136968 to 137568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,321 DEBUG Processing 155/520 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,487 DEBUG Processing 458/558 atomic regions from SNP 137268 to 137868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,516 DEBUG Processing 156/520 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,665 DEBUG Processing 459/558 atomic regions from SNP 137568 to 138168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,718 DEBUG Processing 157/520 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,844 DEBUG Processing 460/558 atomic regions from SNP 137868 to 138468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:26,916 DEBUG Processing 158/520 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,019 DEBUG Processing 461/558 atomic regions from SNP 138168 to 138768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,112 DEBUG Processing 159/520 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,195 DEBUG Processing 462/558 atomic regions from SNP 138468 to 139068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,303 DEBUG Processing 160/520 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,383 DEBUG Processing 463/558 atomic regions from SNP 138768 to 139368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,494 DEBUG Processing 161/520 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,560 DEBUG Processing 464/558 atomic regions from SNP 139068 to 139668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,692 DEBUG Processing 162/520 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,736 DEBUG Processing 465/558 atomic regions from SNP 139368 to 139968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:27,870 DEBUG Processing 163/520 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,909 DEBUG Processing 466/558 atomic regions from SNP 139668 to 140268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,048 DEBUG Processing 164/520 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,084 DEBUG Processing 467/558 atomic regions from SNP 139968 to 140568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,228 DEBUG Processing 165/520 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,258 DEBUG Processing 468/558 atomic regions from SNP 140268 to 140868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,404 DEBUG Processing 166/520 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,432 DEBUG Processing 469/558 atomic regions from SNP 140568 to 141168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,583 DEBUG Processing 167/520 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,606 DEBUG Processing 470/558 atomic regions from SNP 140868 to 141468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,761 DEBUG Processing 168/520 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,782 DEBUG Processing 471/558 atomic regions from SNP 141168 to 141768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:28,959 DEBUG Processing 169/520 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,962 DEBUG Processing 472/558 atomic regions from SNP 141468 to 142068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,134 DEBUG Processing 473/558 atomic regions from SNP 141768 to 142368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,168 DEBUG Processing 170/520 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,310 DEBUG Processing 474/558 atomic regions from SNP 142068 to 142668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,380 DEBUG Processing 171/520 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,485 DEBUG Processing 475/558 atomic regions from SNP 142368 to 142968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,582 DEBUG Processing 172/520 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,664 DEBUG Processing 476/558 atomic regions from SNP 142668 to 143268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,762 DEBUG Processing 173/520 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,842 DEBUG Processing 477/558 atomic regions from SNP 142968 to 143568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:29,971 DEBUG Processing 174/520 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,047 DEBUG Processing 478/558 atomic regions from SNP 143268 to 143868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,192 DEBUG Processing 175/520 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,236 DEBUG Processing 479/558 atomic regions from SNP 143568 to 144168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,402 DEBUG Processing 176/520 atomic regions from SNP 52675 to 53275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,415 DEBUG Processing 480/558 atomic regions from SNP 143868 to 144468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,599 DEBUG Processing 481/558 atomic regions from SNP 144168 to 144768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,616 DEBUG Processing 177/520 atomic regions from SNP 52975 to 53575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,776 DEBUG Processing 482/558 atomic regions from SNP 144468 to 145068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:30,830 DEBUG Processing 178/520 atomic regions from SNP 53275 to 53875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,949 DEBUG Processing 483/558 atomic regions from SNP 144768 to 145368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,018 DEBUG Processing 179/520 atomic regions from SNP 53575 to 54175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,120 DEBUG Processing 484/558 atomic regions from SNP 145068 to 145668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,214 DEBUG Processing 180/520 atomic regions from SNP 53875 to 54475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,293 DEBUG Processing 485/558 atomic regions from SNP 145368 to 145968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,419 DEBUG Processing 181/520 atomic regions from SNP 54175 to 54775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,472 DEBUG Processing 486/558 atomic regions from SNP 145668 to 146268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,630 DEBUG Processing 182/520 atomic regions from SNP 54475 to 55075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,648 DEBUG Processing 487/558 atomic regions from SNP 145968 to 146568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,827 DEBUG Processing 488/558 atomic regions from SNP 146268 to 146868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:31,834 DEBUG Processing 183/520 atomic regions from SNP 54775 to 55375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,937 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:59:32,001 DEBUG Processing 489/558 atomic regions from SNP 146568 to 147168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,007 DEBUG Processing 184/520 atomic regions from SNP 55075 to 55675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,176 DEBUG Processing 490/558 atomic regions from SNP 146868 to 147468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,184 DEBUG Processing 185/520 atomic regions from SNP 55375 to 55975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,356 DEBUG Processing 491/558 atomic regions from SNP 147168 to 147768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,362 DEBUG Processing 186/520 atomic regions from SNP 55675 to 56275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,531 DEBUG Processing 492/558 atomic regions from SNP 147468 to 148068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,539 DEBUG Processing 187/520 atomic regions from SNP 55975 to 56575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,712 DEBUG Processing 493/558 atomic regions from SNP 147768 to 148368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:32,717 DEBUG Processing 188/520 atomic regions from SNP 56275 to 56875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,894 DEBUG Processing 189/520 atomic regions from SNP 56575 to 57175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,910 DEBUG Processing 494/558 atomic regions from SNP 148068 to 148668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,069 DEBUG Processing 190/520 atomic regions from SNP 56875 to 57475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,106 DEBUG Processing 495/558 atomic regions from SNP 148368 to 148968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,247 DEBUG Processing 191/520 atomic regions from SNP 57175 to 57775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,297 DEBUG Processing 496/558 atomic regions from SNP 148668 to 149268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,424 DEBUG Processing 192/520 atomic regions from SNP 57475 to 58075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,471 DEBUG Processing 497/558 atomic regions from SNP 148968 to 149568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,597 DEBUG Processing 193/520 atomic regions from SNP 57775 to 58375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,644 DEBUG Processing 498/558 atomic regions from SNP 149268 to 149868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,772 DEBUG Processing 194/520 atomic regions from SNP 58075 to 58675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,823 DEBUG Processing 499/558 atomic regions from SNP 149568 to 150168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:33,946 DEBUG Processing 195/520 atomic regions from SNP 58375 to 58975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,998 DEBUG Processing 500/558 atomic regions from SNP 149868 to 150468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,118 DEBUG Processing 196/520 atomic regions from SNP 58675 to 59275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,173 DEBUG Processing 501/558 atomic regions from SNP 150168 to 150768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,294 DEBUG Processing 197/520 atomic regions from SNP 58975 to 59575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,348 DEBUG Processing 502/558 atomic regions from SNP 150468 to 151068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,473 DEBUG Processing 198/520 atomic regions from SNP 59275 to 59875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,522 DEBUG Processing 503/558 atomic regions from SNP 150768 to 151368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,648 DEBUG Processing 199/520 atomic regions from SNP 59575 to 60175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,695 DEBUG Processing 504/558 atomic regions from SNP 151068 to 151668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:34,824 DEBUG Processing 200/520 atomic regions from SNP 59875 to 60475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,868 DEBUG Processing 505/558 atomic regions from SNP 151368 to 151968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,001 DEBUG Processing 201/520 atomic regions from SNP 60175 to 60775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,041 DEBUG Processing 506/558 atomic regions from SNP 151668 to 152268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,177 DEBUG Processing 202/520 atomic regions from SNP 60475 to 61075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,214 DEBUG Processing 507/558 atomic regions from SNP 151968 to 152568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,351 DEBUG Processing 203/520 atomic regions from SNP 60775 to 61375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,408 DEBUG Processing 508/558 atomic regions from SNP 152268 to 152868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,523 DEBUG Processing 204/520 atomic regions from SNP 61075 to 61675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,607 DEBUG Processing 509/558 atomic regions from SNP 152568 to 153168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,694 DEBUG Processing 205/520 atomic regions from SNP 61375 to 61975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,811 DEBUG Processing 510/558 atomic regions from SNP 152868 to 153468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:35,868 DEBUG Processing 206/520 atomic regions from SNP 61675 to 62275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,022 DEBUG Processing 511/558 atomic regions from SNP 153168 to 153768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,047 DEBUG Processing 207/520 atomic regions from SNP 61975 to 62575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,203 DEBUG Processing 512/558 atomic regions from SNP 153468 to 154068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,224 DEBUG Processing 208/520 atomic regions from SNP 62275 to 62875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,393 DEBUG Processing 513/558 atomic regions from SNP 153768 to 154368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,399 DEBUG Processing 209/520 atomic regions from SNP 62575 to 63175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,571 DEBUG Processing 210/520 atomic regions from SNP 62875 to 63475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,600 DEBUG Processing 514/558 atomic regions from SNP 154068 to 154668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,747 DEBUG Processing 211/520 atomic regions from SNP 63175 to 63775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,808 DEBUG Processing 515/558 atomic regions from SNP 154368 to 154968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:36,919 DEBUG Processing 212/520 atomic regions from SNP 63475 to 64075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,009 DEBUG Processing 516/558 atomic regions from SNP 154668 to 155268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,096 DEBUG Processing 213/520 atomic regions from SNP 63775 to 64375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,205 DEBUG Processing 517/558 atomic regions from SNP 154968 to 155568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,269 DEBUG Processing 214/520 atomic regions from SNP 64075 to 64675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,413 DEBUG Processing 518/558 atomic regions from SNP 155268 to 155868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,440 DEBUG Processing 215/520 atomic regions from SNP 64375 to 64975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,611 DEBUG Processing 216/520 atomic regions from SNP 64675 to 65275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,622 DEBUG Processing 519/558 atomic regions from SNP 155568 to 156168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,785 DEBUG Processing 217/520 atomic regions from SNP 64975 to 65575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,834 DEBUG Processing 520/558 atomic regions from SNP 155868 to 156468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:37,959 DEBUG Processing 218/520 atomic regions from SNP 65275 to 65875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,047 DEBUG Processing 521/558 atomic regions from SNP 156168 to 156768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,145 DEBUG Processing 219/520 atomic regions from SNP 65575 to 66175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,251 DEBUG Processing 522/558 atomic regions from SNP 156468 to 157068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,319 DEBUG Processing 220/520 atomic regions from SNP 65875 to 66475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,444 DEBUG Processing 523/558 atomic regions from SNP 156768 to 157368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,493 DEBUG Processing 221/520 atomic regions from SNP 66175 to 66775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,651 DEBUG Processing 524/558 atomic regions from SNP 157068 to 157668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:38,668 DEBUG Processing 222/520 atomic regions from SNP 66475 to 67075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,843 DEBUG Processing 223/520 atomic regions from SNP 66775 to 67375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,858 DEBUG Processing 525/558 atomic regions from SNP 157368 to 157968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,024 DEBUG Processing 224/520 atomic regions from SNP 67075 to 67675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,062 DEBUG Processing 526/558 atomic regions from SNP 157668 to 158268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,198 DEBUG Processing 225/520 atomic regions from SNP 67375 to 67975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,268 DEBUG Processing 527/558 atomic regions from SNP 157968 to 158568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,375 DEBUG Processing 226/520 atomic regions from SNP 67675 to 68275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,456 DEBUG Processing 528/558 atomic regions from SNP 158268 to 158868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,549 DEBUG Processing 227/520 atomic regions from SNP 67975 to 68575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,568 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:59:39,570 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:59:39,653 DEBUG Processing 529/558 atomic regions from SNP 158568 to 159168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,726 DEBUG Processing 228/520 atomic regions from SNP 68275 to 68875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,839 DEBUG Processing 530/558 atomic regions from SNP 158868 to 159468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:39,898 DEBUG Processing 229/520 atomic regions from SNP 68575 to 69175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,028 DEBUG Processing 531/558 atomic regions from SNP 159168 to 159768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,073 DEBUG Processing 230/520 atomic regions from SNP 68875 to 69475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,230 DEBUG Processing 532/558 atomic regions from SNP 159468 to 160068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,248 DEBUG Processing 231/520 atomic regions from SNP 69175 to 69775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,421 DEBUG Processing 232/520 atomic regions from SNP 69475 to 70075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,435 DEBUG Processing 533/558 atomic regions from SNP 159768 to 160368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,601 DEBUG Processing 233/520 atomic regions from SNP 69775 to 70375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,637 DEBUG Processing 534/558 atomic regions from SNP 160068 to 160668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:40,799 DEBUG Processing 234/520 atomic regions from SNP 70075 to 70675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,833 DEBUG Processing 535/558 atomic regions from SNP 160368 to 160968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,004 DEBUG Processing 235/520 atomic regions from SNP 70375 to 70975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,034 DEBUG Processing 536/558 atomic regions from SNP 160668 to 161268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,177 DEBUG chrY total SNP count: 125 2025-01-31 09:59:41,177 DEBUG chrY length: 91744698 2025-01-31 09:59:41,177 DEBUG ----------------------------------------- 2025-01-31 09:59:41,177 INFO Processing SNPs in chrY 2025-01-31 09:59:41,178 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 19), (19, 29), (29, 37), (37, 49), (49, 56), (56, 61), (61, 71), (71, 78), (78, 80), (80, 81), (81, 83), (83, 125)] 2025-01-31 09:59:41,178 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [19, 10, 8, 12, 7, 5, 10, 7, 2, 1, 2, 42] SNP IDs counts: [19, 10, 8, 12, 7, 5, 10, 7, 2, 1, 2, 42] Critical gap: 15542bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.95Mbp], 0.97Mbp[0.30Mbp], 1.28Mbp[0.80Mbp], 2.08Mbp[0.17Mbp], 2.26Mbp[1.75Mbp], 4.01Mbp[0.14Mbp], 4.15Mbp[2.69Mbp], 6.85Mbp[3.85Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[17.30Mbp], 40.02Mbp[3.02Mbp], 43.04Mbp[47.67Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:59:41,178 DEBUG chrY time: 0.0014183539897203445 s 2025-01-31 09:59:41,199 DEBUG Processing 236/520 atomic regions from SNP 70675 to 71275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,235 DEBUG Processing 537/558 atomic regions from SNP 160968 to 161568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,396 DEBUG Processing 237/520 atomic regions from SNP 70975 to 71575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,435 DEBUG Processing 538/558 atomic regions from SNP 161268 to 161868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,599 DEBUG Processing 238/520 atomic regions from SNP 71275 to 71875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,622 DEBUG Processing 539/558 atomic regions from SNP 161568 to 162168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,792 DEBUG Processing 239/520 atomic regions from SNP 71575 to 72175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:41,795 DEBUG Processing 540/558 atomic regions from SNP 161868 to 162468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,968 DEBUG Processing 541/558 atomic regions from SNP 162168 to 162768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:41,988 DEBUG Processing 240/520 atomic regions from SNP 71875 to 72475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,142 DEBUG Processing 542/558 atomic regions from SNP 162468 to 163068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,200 DEBUG Processing 241/520 atomic regions from SNP 72175 to 72775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,314 DEBUG Processing 543/558 atomic regions from SNP 162768 to 163368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,411 DEBUG Processing 242/520 atomic regions from SNP 72475 to 73075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,488 DEBUG Processing 544/558 atomic regions from SNP 163068 to 163668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,605 DEBUG Processing 243/520 atomic regions from SNP 72775 to 73375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,663 DEBUG Processing 545/558 atomic regions from SNP 163368 to 163968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,779 DEBUG Processing 244/520 atomic regions from SNP 73075 to 73675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:42,836 DEBUG Processing 546/558 atomic regions from SNP 163668 to 164268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:42,952 DEBUG Processing 245/520 atomic regions from SNP 73375 to 73975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,031 DEBUG Processing 547/558 atomic regions from SNP 163968 to 164568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,149 DEBUG Processing 246/520 atomic regions from SNP 73675 to 74275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,230 DEBUG Processing 548/558 atomic regions from SNP 164268 to 164868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,357 DEBUG Processing 247/520 atomic regions from SNP 73975 to 74575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,406 DEBUG Processing 549/558 atomic regions from SNP 164568 to 165168 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,561 DEBUG Processing 248/520 atomic regions from SNP 74275 to 74875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,578 DEBUG Processing 550/558 atomic regions from SNP 164868 to 165468 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,725 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:59:43,762 DEBUG Processing 551/558 atomic regions from SNP 165168 to 165768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,764 DEBUG Processing 249/520 atomic regions from SNP 74575 to 75175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:43,955 DEBUG Processing 552/558 atomic regions from SNP 165468 to 166068 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:43,966 DEBUG Processing 250/520 atomic regions from SNP 74875 to 75475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,138 DEBUG Processing 251/520 atomic regions from SNP 75175 to 75775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,152 DEBUG Processing 553/558 atomic regions from SNP 165768 to 166368 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,310 DEBUG Processing 252/520 atomic regions from SNP 75475 to 76075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,337 DEBUG Processing 554/558 atomic regions from SNP 166068 to 166668 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,484 DEBUG Processing 253/520 atomic regions from SNP 75775 to 76375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,530 DEBUG Processing 555/558 atomic regions from SNP 166368 to 166968 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,655 DEBUG Processing 254/520 atomic regions from SNP 76075 to 76675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,727 DEBUG Processing 556/558 atomic regions from SNP 166668 to 167268 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:44,831 DEBUG Processing 255/520 atomic regions from SNP 76375 to 76975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:44,917 DEBUG Processing 557/558 atomic regions from SNP 166968 to 167568 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:45,001 DEBUG Processing 256/520 atomic regions from SNP 76675 to 77275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,106 DEBUG Processing 558/558 atomic regions from SNP 167268 to 167868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:59:45,176 DEBUG Processing 257/520 atomic regions from SNP 76975 to 77575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,237 DEBUG Unique SNPs positions in subchromosome 1: 167869 2025-01-31 09:59:45,346 DEBUG Processing 258/520 atomic regions from SNP 77275 to 77875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,515 DEBUG Processing 259/520 atomic regions from SNP 77575 to 78175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,683 DEBUG Processing 260/520 atomic regions from SNP 77875 to 78475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:45,856 DEBUG Processing 261/520 atomic regions from SNP 78175 to 78775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,046 DEBUG Processing 262/520 atomic regions from SNP 78475 to 79075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,223 DEBUG Processing 263/520 atomic regions from SNP 78775 to 79375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,397 DEBUG Processing 264/520 atomic regions from SNP 79075 to 79675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,572 DEBUG Processing 265/520 atomic regions from SNP 79375 to 79975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,749 DEBUG Processing 266/520 atomic regions from SNP 79675 to 80275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:46,922 DEBUG Processing 267/520 atomic regions from SNP 79975 to 80575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,074 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:59:47,098 DEBUG Processing 268/520 atomic regions from SNP 80275 to 80875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,272 DEBUG Processing 269/520 atomic regions from SNP 80575 to 81175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,451 DEBUG Processing 270/520 atomic regions from SNP 80875 to 81475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,630 DEBUG Processing 271/520 atomic regions from SNP 81175 to 81775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,808 DEBUG Processing 272/520 atomic regions from SNP 81475 to 82075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:47,980 DEBUG Processing 273/520 atomic regions from SNP 81775 to 82375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,151 DEBUG Processing 274/520 atomic regions from SNP 82075 to 82675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,320 DEBUG Processing 275/520 atomic regions from SNP 82375 to 82975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,489 DEBUG Processing 276/520 atomic regions from SNP 82675 to 83275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,659 DEBUG Processing 277/520 atomic regions from SNP 82975 to 83575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,828 DEBUG Processing 278/520 atomic regions from SNP 83275 to 83875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:48,998 DEBUG Processing 279/520 atomic regions from SNP 83575 to 84175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,166 DEBUG Processing 280/520 atomic regions from SNP 83875 to 84475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,335 DEBUG Processing 281/520 atomic regions from SNP 84175 to 84775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,522 DEBUG Processing 282/520 atomic regions from SNP 84475 to 85075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,701 DEBUG Processing 283/520 atomic regions from SNP 84775 to 85375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:49,871 DEBUG Processing 284/520 atomic regions from SNP 85075 to 85675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,042 DEBUG Processing 285/520 atomic regions from SNP 85375 to 85975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,213 DEBUG Processing 286/520 atomic regions from SNP 85675 to 86275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,384 DEBUG Processing 287/520 atomic regions from SNP 85975 to 86575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,558 DEBUG Processing 288/520 atomic regions from SNP 86275 to 86875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,728 DEBUG Processing 289/520 atomic regions from SNP 86575 to 87175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:50,899 DEBUG Processing 290/520 atomic regions from SNP 86875 to 87475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,070 DEBUG Processing 291/520 atomic regions from SNP 87175 to 87775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,240 DEBUG Processing 292/520 atomic regions from SNP 87475 to 88075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,410 DEBUG Processing 293/520 atomic regions from SNP 87775 to 88375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,586 DEBUG Processing 294/520 atomic regions from SNP 88075 to 88675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,787 DEBUG Processing 295/520 atomic regions from SNP 88375 to 88975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:51,995 DEBUG Processing 296/520 atomic regions from SNP 88675 to 89275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,198 DEBUG Processing 297/520 atomic regions from SNP 88975 to 89575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,401 DEBUG Processing 298/520 atomic regions from SNP 89275 to 89875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,611 DEBUG Processing 299/520 atomic regions from SNP 89575 to 90175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:52,816 DEBUG Processing 300/520 atomic regions from SNP 89875 to 90475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,015 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:59:53,016 DEBUG chr18: Signal quantile: 0.991. signal threshold: 11. Best RMSEA: 0.011 2025-01-31 09:59:53,020 DEBUG Processing 301/520 atomic regions from SNP 90175 to 90775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,220 DEBUG Processing 302/520 atomic regions from SNP 90475 to 91075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,418 DEBUG Processing 303/520 atomic regions from SNP 90775 to 91375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,593 DEBUG Processing 304/520 atomic regions from SNP 91075 to 91675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,766 DEBUG Processing 305/520 atomic regions from SNP 91375 to 91975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:53,944 DEBUG Processing 306/520 atomic regions from SNP 91675 to 92275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,121 DEBUG Processing 307/520 atomic regions from SNP 91975 to 92575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,294 DEBUG Processing 308/520 atomic regions from SNP 92275 to 92875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,468 DEBUG Processing 309/520 atomic regions from SNP 92575 to 93175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,528 DEBUG chr18 total SNP count: 155458 2025-01-31 09:59:54,528 DEBUG chr18 length: 90702639 2025-01-31 09:59:54,528 DEBUG ----------------------------------------- 2025-01-31 09:59:54,529 INFO Processing SNPs in chr18 2025-01-31 09:59:54,640 DEBUG Processing 310/520 atomic regions from SNP 92875 to 93475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,681 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155458)] 2025-01-31 09:59:54,785 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:59:54,810 DEBUG Processing 311/520 atomic regions from SNP 93175 to 93775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:54,987 DEBUG Processing 312/520 atomic regions from SNP 93475 to 94075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,158 DEBUG Processing 313/520 atomic regions from SNP 93775 to 94375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,327 DEBUG Processing 314/520 atomic regions from SNP 94075 to 94675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,497 DEBUG Processing 315/520 atomic regions from SNP 94375 to 94975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,667 DEBUG Processing 316/520 atomic regions from SNP 94675 to 95275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:55,834 DEBUG Processing 317/520 atomic regions from SNP 94975 to 95575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,002 DEBUG Processing 318/520 atomic regions from SNP 95275 to 95875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,169 DEBUG Processing 319/520 atomic regions from SNP 95575 to 96175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,241 DEBUG Subchromosome time: 139.69166819704697, subchromosome SNPs: 167869 2025-01-31 09:59:56,241 DEBUG Estimated BADs: [1.60, 6.38, 0.80, 3.19, 0.80, 3.19, 1.60, 6.38, 0.40, 3.19, 0.53, 3.19, 0.80, 1.60, 0.53, 1.60, 0.32, 7.98, 1.60, 4.79, 0.32, 0.80, 4.79, 0.80, 6.38, 3.19] SNP counts: [724, 2674, 5111, 1821, 1493, 8441, 4382, 3591, 1027, 6349, 11125, 18027, 6885, 5709, 5998, 1861, 8358, 455, 4036, 629, 9233, 39953, 737, 3575, 8878, 6797] SNP IDs counts: [724, 2674, 5111, 1821, 1493, 8441, 4382, 3591, 1027, 6349, 11125, 18027, 6885, 5709, 5998, 1861, 8358, 455, 4036, 629, 9233, 39953, 737, 3575, 8878, 6797] Critical gap: 532905bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.02Mbp], 3.84Mbp, 5.27Mbp, 8.06Mbp, 9.06Mbp, 9.89Mbp, 14.50Mbp, 17.11Mbp, 19.02Mbp, 19.72Mbp, 23.21Mbp, 29.44Mbp, 39.15Mbp, 43.01Mbp, 46.16Mbp, 49.77Mbp, 50.76Mbp, 55.81Mbp, 56.08Mbp, 58.41Mbp, 58.75Mbp, 64.42Mbp, 87.35Mbp, 87.75Mbp, 89.76Mbp, 94.46Mbp, 98.21Mbp] 2025-01-31 09:59:56,241 DEBUG chr16 time: 139.69213102699723 s 2025-01-31 09:59:56,330 DEBUG chr16: Fitting background model for 26 segments 2025-01-31 09:59:56,338 DEBUG Processing 320/520 atomic regions from SNP 95875 to 96475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,507 DEBUG Processing 321/520 atomic regions from SNP 96175 to 96775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,674 DEBUG Processing 322/520 atomic regions from SNP 96475 to 97075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:56,844 DEBUG Processing 323/520 atomic regions from SNP 96775 to 97375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,013 DEBUG Processing 324/520 atomic regions from SNP 97075 to 97675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,182 DEBUG Processing 325/520 atomic regions from SNP 97375 to 97975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,355 DEBUG Processing 326/520 atomic regions from SNP 97675 to 98275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,526 DEBUG Processing 327/520 atomic regions from SNP 97975 to 98575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,625 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:59:57,627 DEBUG chr19: Signal quantile: 0.982. signal threshold: 13. Best RMSEA: 0.010 2025-01-31 09:59:57,698 DEBUG Processing 328/520 atomic regions from SNP 98275 to 98875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:57,870 DEBUG Processing 329/520 atomic regions from SNP 98575 to 99175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,040 DEBUG Processing 330/520 atomic regions from SNP 98875 to 99475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,214 DEBUG Processing 331/520 atomic regions from SNP 99175 to 99775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,385 DEBUG Processing 332/520 atomic regions from SNP 99475 to 100075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,555 DEBUG Processing 333/520 atomic regions from SNP 99775 to 100375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,595 DEBUG chr19 total SNP count: 102728 2025-01-31 09:59:58,596 DEBUG chr19 length: 61431566 2025-01-31 09:59:58,596 DEBUG ----------------------------------------- 2025-01-31 09:59:58,596 INFO Processing SNPs in chr19 2025-01-31 09:59:58,697 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 102728)] 2025-01-31 09:59:58,726 DEBUG Processing 334/520 atomic regions from SNP 100075 to 100675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:58,765 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:59:58,896 DEBUG Processing 335/520 atomic regions from SNP 100375 to 100975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,065 DEBUG Processing 336/520 atomic regions from SNP 100675 to 101275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,234 DEBUG Processing 337/520 atomic regions from SNP 100975 to 101575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,419 DEBUG Processing 338/520 atomic regions from SNP 101275 to 101875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,591 DEBUG Processing 339/520 atomic regions from SNP 101575 to 102175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,761 DEBUG Processing 340/520 atomic regions from SNP 101875 to 102475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:59,932 DEBUG Processing 341/520 atomic regions from SNP 102175 to 102775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,103 DEBUG Processing 342/520 atomic regions from SNP 102475 to 103075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,280 DEBUG Processing 343/520 atomic regions from SNP 102775 to 103375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,562 DEBUG Processing 344/520 atomic regions from SNP 103075 to 103675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,740 DEBUG Processing 345/520 atomic regions from SNP 103375 to 103975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:00,908 DEBUG Processing 346/520 atomic regions from SNP 103675 to 104275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,076 DEBUG Processing 347/520 atomic regions from SNP 103975 to 104575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,254 DEBUG Processing 348/520 atomic regions from SNP 104275 to 104875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,430 DEBUG Processing 349/520 atomic regions from SNP 104575 to 105175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,601 DEBUG Processing 350/520 atomic regions from SNP 104875 to 105475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,779 DEBUG Processing 351/520 atomic regions from SNP 105175 to 105775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:01,995 DEBUG Processing 352/520 atomic regions from SNP 105475 to 106075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,211 DEBUG Processing 353/520 atomic regions from SNP 105775 to 106375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,409 DEBUG Processing 354/520 atomic regions from SNP 106075 to 106675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,587 DEBUG Processing 355/520 atomic regions from SNP 106375 to 106975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,761 DEBUG Processing 356/520 atomic regions from SNP 106675 to 107275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:02,935 DEBUG Processing 357/520 atomic regions from SNP 106975 to 107575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,108 DEBUG Processing 358/520 atomic regions from SNP 107275 to 107875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,282 DEBUG Processing 359/520 atomic regions from SNP 107575 to 108175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,454 DEBUG Processing 360/520 atomic regions from SNP 107875 to 108475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,627 DEBUG Processing 361/520 atomic regions from SNP 108175 to 108775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,801 DEBUG Processing 362/520 atomic regions from SNP 108475 to 109075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:03,973 DEBUG Processing 363/520 atomic regions from SNP 108775 to 109375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,149 DEBUG Processing 364/520 atomic regions from SNP 109075 to 109675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,332 DEBUG Processing 365/520 atomic regions from SNP 109375 to 109975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,505 DEBUG Processing 366/520 atomic regions from SNP 109675 to 110275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,679 DEBUG Processing 367/520 atomic regions from SNP 109975 to 110575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:04,853 DEBUG Processing 368/520 atomic regions from SNP 110275 to 110875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,025 DEBUG Processing 369/520 atomic regions from SNP 110575 to 111175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,196 DEBUG Processing 370/520 atomic regions from SNP 110875 to 111475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,386 DEBUG Processing 371/520 atomic regions from SNP 111175 to 111775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,558 DEBUG Processing 372/520 atomic regions from SNP 111475 to 112075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,747 DEBUG Processing 373/520 atomic regions from SNP 111775 to 112375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:05,919 DEBUG Processing 374/520 atomic regions from SNP 112075 to 112675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,091 DEBUG Processing 375/520 atomic regions from SNP 112375 to 112975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,264 DEBUG Processing 376/520 atomic regions from SNP 112675 to 113275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,439 DEBUG Processing 377/520 atomic regions from SNP 112975 to 113575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,613 DEBUG Processing 378/520 atomic regions from SNP 113275 to 113875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,787 DEBUG Processing 379/520 atomic regions from SNP 113575 to 114175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:06,958 DEBUG Processing 380/520 atomic regions from SNP 113875 to 114475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,134 DEBUG Processing 381/520 atomic regions from SNP 114175 to 114775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,325 DEBUG Processing 382/520 atomic regions from SNP 114475 to 115075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,527 DEBUG Processing 383/520 atomic regions from SNP 114775 to 115375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,726 DEBUG Processing 384/520 atomic regions from SNP 115075 to 115675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:07,905 DEBUG Processing 385/520 atomic regions from SNP 115375 to 115975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,103 DEBUG Processing 386/520 atomic regions from SNP 115675 to 116275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,290 DEBUG Processing 387/520 atomic regions from SNP 115975 to 116575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,475 DEBUG Processing 388/520 atomic regions from SNP 116275 to 116875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,650 DEBUG Processing 389/520 atomic regions from SNP 116575 to 117175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:08,827 DEBUG Processing 390/520 atomic regions from SNP 116875 to 117475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,005 DEBUG Processing 391/520 atomic regions from SNP 117175 to 117775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,184 DEBUG Processing 392/520 atomic regions from SNP 117475 to 118075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,365 DEBUG Processing 393/520 atomic regions from SNP 117775 to 118375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,551 DEBUG Processing 394/520 atomic regions from SNP 118075 to 118675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,729 DEBUG Processing 395/520 atomic regions from SNP 118375 to 118975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:09,905 DEBUG Processing 396/520 atomic regions from SNP 118675 to 119275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,077 DEBUG Processing 397/520 atomic regions from SNP 118975 to 119575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,249 DEBUG Processing 398/520 atomic regions from SNP 119275 to 119875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,422 DEBUG Processing 399/520 atomic regions from SNP 119575 to 120175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,594 DEBUG Processing 400/520 atomic regions from SNP 119875 to 120475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,763 DEBUG Processing 401/520 atomic regions from SNP 120175 to 120775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,947 DEBUG Processing 402/520 atomic regions from SNP 120475 to 121075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:10,978 DEBUG Segmenting atomic regions: 2025-01-31 10:00:11,023 DEBUG Processing 1/341 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,125 DEBUG Processing 403/520 atomic regions from SNP 120775 to 121375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,193 DEBUG Processing 2/341 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,296 DEBUG Processing 404/520 atomic regions from SNP 121075 to 121675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,354 DEBUG Processing 3/341 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,475 DEBUG Processing 405/520 atomic regions from SNP 121375 to 121975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,526 DEBUG Processing 4/341 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,651 DEBUG Processing 406/520 atomic regions from SNP 121675 to 122275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,697 DEBUG Processing 5/341 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:11,830 DEBUG Processing 407/520 atomic regions from SNP 121975 to 122575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:11,884 DEBUG Processing 6/341 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,007 DEBUG Processing 408/520 atomic regions from SNP 122275 to 122875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,069 DEBUG Processing 7/341 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,185 DEBUG Processing 409/520 atomic regions from SNP 122575 to 123175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,253 DEBUG Processing 8/341 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,362 DEBUG Processing 410/520 atomic regions from SNP 122875 to 123475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,427 DEBUG Processing 9/341 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,535 DEBUG Processing 411/520 atomic regions from SNP 123175 to 123775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,602 DEBUG Processing 10/341 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,711 DEBUG Processing 412/520 atomic regions from SNP 123475 to 124075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,774 DEBUG Processing 11/341 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:12,888 DEBUG Processing 413/520 atomic regions from SNP 123775 to 124375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:12,952 DEBUG Processing 12/341 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,066 DEBUG Processing 414/520 atomic regions from SNP 124075 to 124675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,167 DEBUG Processing 13/341 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,255 DEBUG Segmenting atomic regions: 2025-01-31 10:00:13,275 DEBUG Processing 415/520 atomic regions from SNP 124375 to 124975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,322 DEBUG Processing 1/517 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,350 DEBUG Processing 14/341 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,454 DEBUG Processing 416/520 atomic regions from SNP 124675 to 125275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,496 DEBUG Processing 2/517 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,536 DEBUG Processing 15/341 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,634 DEBUG Processing 417/520 atomic regions from SNP 124975 to 125575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,671 DEBUG Processing 3/517 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,729 DEBUG Processing 16/341 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,815 DEBUG Processing 418/520 atomic regions from SNP 125275 to 125875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:13,846 DEBUG Processing 4/517 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,919 DEBUG Processing 17/341 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:13,995 DEBUG Processing 419/520 atomic regions from SNP 125575 to 126175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,021 DEBUG Processing 5/517 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,112 DEBUG Processing 18/341 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,177 DEBUG Processing 420/520 atomic regions from SNP 125875 to 126475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,198 DEBUG Processing 6/517 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,297 DEBUG Processing 19/341 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,358 DEBUG Processing 421/520 atomic regions from SNP 126175 to 126775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,370 DEBUG Processing 7/517 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,487 DEBUG Processing 20/341 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,541 DEBUG Processing 422/520 atomic regions from SNP 126475 to 127075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,551 DEBUG Processing 8/517 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,674 DEBUG Processing 21/341 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,727 DEBUG Processing 423/520 atomic regions from SNP 126775 to 127375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,735 DEBUG Processing 9/517 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,852 DEBUG Processing 22/341 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:14,911 DEBUG Processing 424/520 atomic regions from SNP 127075 to 127675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:14,924 DEBUG Processing 10/517 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,034 DEBUG Processing 23/341 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,105 DEBUG Processing 425/520 atomic regions from SNP 127375 to 127975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,114 DEBUG Processing 11/517 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,227 DEBUG Processing 24/341 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,291 DEBUG Processing 426/520 atomic regions from SNP 127675 to 128275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,309 DEBUG Processing 12/517 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,419 DEBUG Processing 25/341 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,474 DEBUG Processing 427/520 atomic regions from SNP 127975 to 128575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,486 DEBUG Processing 13/517 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,602 DEBUG Processing 26/341 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,650 DEBUG Processing 428/520 atomic regions from SNP 128275 to 128875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,677 DEBUG Processing 14/517 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,785 DEBUG Processing 27/341 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:15,858 DEBUG Processing 429/520 atomic regions from SNP 128575 to 129175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:15,874 DEBUG Processing 15/517 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,938 DEBUG Processing 28/341 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,039 DEBUG Processing 430/520 atomic regions from SNP 128875 to 129475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,065 DEBUG Processing 16/517 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,096 DEBUG Processing 29/341 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,219 DEBUG Processing 431/520 atomic regions from SNP 129175 to 129775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,246 DEBUG Processing 17/517 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,252 DEBUG Processing 30/341 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,400 DEBUG Processing 432/520 atomic regions from SNP 129475 to 130075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,409 DEBUG Processing 31/341 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,428 DEBUG Processing 18/517 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,565 DEBUG Processing 32/341 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,583 DEBUG Processing 433/520 atomic regions from SNP 129775 to 130375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,621 DEBUG Processing 19/517 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,748 DEBUG Processing 33/341 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,767 DEBUG Processing 434/520 atomic regions from SNP 130075 to 130675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:16,809 DEBUG Processing 20/517 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,941 DEBUG Processing 34/341 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:16,964 DEBUG Processing 435/520 atomic regions from SNP 130375 to 130975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,013 DEBUG Processing 21/517 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,124 DEBUG Processing 35/341 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,169 DEBUG Processing 436/520 atomic regions from SNP 130675 to 131275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,192 DEBUG Processing 22/517 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,284 DEBUG Processing 36/341 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,378 DEBUG Processing 23/517 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,379 DEBUG Processing 437/520 atomic regions from SNP 130975 to 131575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,440 DEBUG Processing 37/341 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,556 DEBUG Processing 24/517 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,572 DEBUG Processing 438/520 atomic regions from SNP 131275 to 131875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,593 DEBUG Processing 38/341 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,734 DEBUG Processing 25/517 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,769 DEBUG Processing 439/520 atomic regions from SNP 131575 to 132175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,779 DEBUG Processing 39/341 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:17,908 DEBUG Processing 26/517 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,957 DEBUG Processing 440/520 atomic regions from SNP 131875 to 132475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:17,975 DEBUG Processing 40/341 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,084 DEBUG Processing 27/517 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,139 DEBUG Processing 441/520 atomic regions from SNP 132175 to 132775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,160 DEBUG Processing 41/341 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,255 DEBUG Processing 28/517 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,320 DEBUG Processing 442/520 atomic regions from SNP 132475 to 133075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,340 DEBUG Processing 42/341 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,429 DEBUG Processing 29/517 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,503 DEBUG Processing 443/520 atomic regions from SNP 132775 to 133375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,520 DEBUG Processing 43/341 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,603 DEBUG Processing 30/517 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,685 DEBUG Processing 444/520 atomic regions from SNP 133075 to 133675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,697 DEBUG Processing 44/341 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,778 DEBUG Processing 31/517 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,871 DEBUG Processing 445/520 atomic regions from SNP 133375 to 133975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:18,873 DEBUG Processing 45/341 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:18,953 DEBUG Processing 32/517 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,032 DEBUG Processing 46/341 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,054 DEBUG Processing 446/520 atomic regions from SNP 133675 to 134275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,134 DEBUG Processing 33/517 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,195 DEBUG Processing 47/341 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,239 DEBUG Processing 447/520 atomic regions from SNP 133975 to 134575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,308 DEBUG Processing 34/517 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,349 DEBUG Processing 48/341 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,420 DEBUG Processing 448/520 atomic regions from SNP 134275 to 134875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,482 DEBUG Processing 35/517 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,506 DEBUG Processing 49/341 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,602 DEBUG Processing 449/520 atomic regions from SNP 134575 to 135175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,656 DEBUG Processing 36/517 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,664 DEBUG Processing 50/341 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,788 DEBUG Processing 450/520 atomic regions from SNP 134875 to 135475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:19,834 DEBUG Processing 37/517 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,845 DEBUG Processing 51/341 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:19,973 DEBUG Processing 451/520 atomic regions from SNP 135175 to 135775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,001 DEBUG Processing 52/341 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,013 DEBUG Processing 38/517 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,157 DEBUG Processing 53/341 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,159 DEBUG Processing 452/520 atomic regions from SNP 135475 to 136075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,192 DEBUG Processing 39/517 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,320 DEBUG Processing 54/341 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,346 DEBUG Processing 453/520 atomic regions from SNP 135775 to 136375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,371 DEBUG Processing 40/517 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,476 DEBUG Processing 55/341 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,532 DEBUG Processing 454/520 atomic regions from SNP 136075 to 136675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,554 DEBUG Processing 41/517 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,630 DEBUG Processing 56/341 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,718 DEBUG Processing 455/520 atomic regions from SNP 136375 to 136975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,732 DEBUG Processing 42/517 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,788 DEBUG Processing 57/341 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:20,911 DEBUG Processing 43/517 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,912 DEBUG Processing 456/520 atomic regions from SNP 136675 to 137275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:20,949 DEBUG Processing 58/341 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,106 DEBUG Processing 59/341 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,113 DEBUG Processing 44/517 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,114 DEBUG Processing 457/520 atomic regions from SNP 136975 to 137575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,264 DEBUG Processing 60/341 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,296 DEBUG Processing 45/517 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,318 DEBUG Processing 458/520 atomic regions from SNP 137275 to 137875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,419 DEBUG Processing 61/341 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,473 DEBUG Processing 46/517 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,526 DEBUG Processing 459/520 atomic regions from SNP 137575 to 138175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,578 DEBUG Processing 62/341 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,651 DEBUG Processing 47/517 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,731 DEBUG Processing 63/341 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,736 DEBUG Processing 460/520 atomic regions from SNP 137875 to 138475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:21,824 DEBUG Processing 48/517 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,884 DEBUG Processing 64/341 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:21,923 DEBUG Processing 461/520 atomic regions from SNP 138175 to 138775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,001 DEBUG Processing 49/517 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,039 DEBUG Processing 65/341 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,109 DEBUG Processing 462/520 atomic regions from SNP 138475 to 139075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,179 DEBUG Processing 50/517 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,202 DEBUG Processing 66/341 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,288 DEBUG Processing 463/520 atomic regions from SNP 138775 to 139375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,354 DEBUG Processing 51/517 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,356 DEBUG Processing 67/341 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,487 DEBUG Processing 464/520 atomic regions from SNP 139075 to 139675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,510 DEBUG Processing 68/341 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,532 DEBUG Processing 52/517 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,668 DEBUG Processing 69/341 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,694 DEBUG Processing 465/520 atomic regions from SNP 139375 to 139975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,714 DEBUG Processing 53/517 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,821 DEBUG Processing 70/341 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:22,881 DEBUG Processing 466/520 atomic regions from SNP 139675 to 140275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:22,898 DEBUG Processing 54/517 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,976 DEBUG Processing 71/341 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,065 DEBUG Processing 467/520 atomic regions from SNP 139975 to 140575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,075 DEBUG Processing 55/517 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,130 DEBUG Processing 72/341 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,247 DEBUG Processing 468/520 atomic regions from SNP 140275 to 140875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,253 DEBUG Processing 56/517 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,291 DEBUG Processing 73/341 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,433 DEBUG Processing 469/520 atomic regions from SNP 140575 to 141175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,444 DEBUG Processing 57/517 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,460 DEBUG Processing 74/341 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,616 DEBUG Processing 470/520 atomic regions from SNP 140875 to 141475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,622 DEBUG Processing 75/341 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,637 DEBUG Processing 58/517 atomic regions from SNP 17157 to 17757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,779 DEBUG Processing 76/341 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,803 DEBUG Processing 471/520 atomic regions from SNP 141175 to 141775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:23,818 DEBUG Processing 59/517 atomic regions from SNP 17457 to 18057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,936 DEBUG Processing 77/341 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:23,997 DEBUG Processing 60/517 atomic regions from SNP 17757 to 18357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,013 DEBUG Processing 472/520 atomic regions from SNP 141475 to 142075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,094 DEBUG Processing 78/341 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,177 DEBUG Processing 61/517 atomic regions from SNP 18057 to 18657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,228 DEBUG Processing 473/520 atomic regions from SNP 141775 to 142375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,245 DEBUG Processing 79/341 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,352 DEBUG Processing 62/517 atomic regions from SNP 18357 to 18957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,397 DEBUG Processing 80/341 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,433 DEBUG Processing 474/520 atomic regions from SNP 142075 to 142675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,526 DEBUG Processing 63/517 atomic regions from SNP 18657 to 19257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,550 DEBUG Processing 81/341 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,617 DEBUG Processing 475/520 atomic regions from SNP 142375 to 142975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,701 DEBUG Processing 64/517 atomic regions from SNP 18957 to 19557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,701 DEBUG Processing 82/341 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,800 DEBUG Processing 476/520 atomic regions from SNP 142675 to 143275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:24,855 DEBUG Processing 83/341 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:24,879 DEBUG Processing 65/517 atomic regions from SNP 19257 to 19857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,989 DEBUG Processing 477/520 atomic regions from SNP 142975 to 143575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,010 DEBUG Processing 84/341 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,054 DEBUG Processing 66/517 atomic regions from SNP 19557 to 20157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,164 DEBUG Processing 85/341 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,183 DEBUG Processing 478/520 atomic regions from SNP 143275 to 143875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,232 DEBUG Processing 67/517 atomic regions from SNP 19857 to 20457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,317 DEBUG Processing 86/341 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,396 DEBUG Processing 479/520 atomic regions from SNP 143575 to 144175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,412 DEBUG Processing 68/517 atomic regions from SNP 20157 to 20757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,481 DEBUG Processing 87/341 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,590 DEBUG Processing 69/517 atomic regions from SNP 20457 to 21057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,598 DEBUG Processing 480/520 atomic regions from SNP 143875 to 144475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,635 DEBUG Processing 88/341 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,765 DEBUG Processing 70/517 atomic regions from SNP 20757 to 21357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,788 DEBUG Processing 481/520 atomic regions from SNP 144175 to 144775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:25,799 DEBUG Processing 89/341 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,944 DEBUG Processing 71/517 atomic regions from SNP 21057 to 21657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,957 DEBUG Processing 90/341 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:25,974 DEBUG Processing 482/520 atomic regions from SNP 144475 to 145075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,114 DEBUG Processing 91/341 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,122 DEBUG Processing 72/517 atomic regions from SNP 21357 to 21957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,168 DEBUG Processing 483/520 atomic regions from SNP 144775 to 145375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,270 DEBUG Processing 92/341 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,298 DEBUG Processing 73/517 atomic regions from SNP 21657 to 22257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,367 DEBUG Processing 484/520 atomic regions from SNP 145075 to 145675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,432 DEBUG Processing 93/341 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,473 DEBUG Processing 74/517 atomic regions from SNP 21957 to 22557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,550 DEBUG Processing 485/520 atomic regions from SNP 145375 to 145975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,592 DEBUG Processing 94/341 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,650 DEBUG Processing 75/517 atomic regions from SNP 22257 to 22857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,743 DEBUG Processing 486/520 atomic regions from SNP 145675 to 146275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:26,754 DEBUG Processing 95/341 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,828 DEBUG Processing 76/517 atomic regions from SNP 22557 to 23157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,917 DEBUG Processing 96/341 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:26,935 DEBUG Processing 487/520 atomic regions from SNP 145975 to 146575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,007 DEBUG Processing 77/517 atomic regions from SNP 22857 to 23457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,079 DEBUG Processing 97/341 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,122 DEBUG Processing 488/520 atomic regions from SNP 146275 to 146875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,196 DEBUG Processing 78/517 atomic regions from SNP 23157 to 23757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,270 DEBUG Processing 98/341 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,336 DEBUG Processing 489/520 atomic regions from SNP 146575 to 147175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,413 DEBUG Processing 79/517 atomic regions from SNP 23457 to 24057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,437 DEBUG Processing 99/341 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,520 DEBUG Processing 490/520 atomic regions from SNP 146875 to 147475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,589 DEBUG Processing 80/517 atomic regions from SNP 23757 to 24357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,594 DEBUG Processing 100/341 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,701 DEBUG Processing 491/520 atomic regions from SNP 147175 to 147775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,750 DEBUG Processing 101/341 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,765 DEBUG Processing 81/517 atomic regions from SNP 24057 to 24657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,882 DEBUG Processing 492/520 atomic regions from SNP 147475 to 148075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:27,907 DEBUG Processing 102/341 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:27,941 DEBUG Processing 82/517 atomic regions from SNP 24357 to 24957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,067 DEBUG Processing 493/520 atomic regions from SNP 147775 to 148375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,067 DEBUG Processing 103/341 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,119 DEBUG Processing 83/517 atomic regions from SNP 24657 to 25257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,224 DEBUG Processing 104/341 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,249 DEBUG Processing 494/520 atomic regions from SNP 148075 to 148675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,298 DEBUG Processing 84/517 atomic regions from SNP 24957 to 25557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,378 DEBUG Processing 105/341 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,437 DEBUG Processing 495/520 atomic regions from SNP 148375 to 148975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,485 DEBUG Processing 85/517 atomic regions from SNP 25257 to 25857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,539 DEBUG Processing 106/341 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,627 DEBUG Processing 496/520 atomic regions from SNP 148675 to 149275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,668 DEBUG Processing 86/517 atomic regions from SNP 25557 to 26157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,699 DEBUG Processing 107/341 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:28,832 DEBUG Processing 497/520 atomic regions from SNP 148975 to 149575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:28,893 DEBUG Processing 87/517 atomic regions from SNP 25857 to 26457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,898 DEBUG Processing 108/341 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,044 DEBUG Processing 498/520 atomic regions from SNP 149275 to 149875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,060 DEBUG Processing 109/341 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,085 DEBUG Processing 88/517 atomic regions from SNP 26157 to 26757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,225 DEBUG Processing 110/341 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,248 DEBUG Processing 499/520 atomic regions from SNP 149575 to 150175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,278 DEBUG Processing 89/517 atomic regions from SNP 26457 to 27057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,390 DEBUG Processing 111/341 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,448 DEBUG Processing 500/520 atomic regions from SNP 149875 to 150475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,464 DEBUG Processing 90/517 atomic regions from SNP 26757 to 27357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,554 DEBUG Processing 112/341 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,648 DEBUG Processing 501/520 atomic regions from SNP 150175 to 150775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,659 DEBUG Processing 91/517 atomic regions from SNP 27057 to 27657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,727 DEBUG Processing 113/341 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:29,873 DEBUG Processing 92/517 atomic regions from SNP 27357 to 27957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,875 DEBUG Processing 502/520 atomic regions from SNP 150475 to 151075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:29,908 DEBUG Processing 114/341 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,090 DEBUG Processing 93/517 atomic regions from SNP 27657 to 28257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,094 DEBUG Processing 503/520 atomic regions from SNP 150775 to 151375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,120 DEBUG Processing 115/341 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,311 DEBUG Processing 94/517 atomic regions from SNP 27957 to 28557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,314 DEBUG Processing 116/341 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,319 DEBUG Processing 504/520 atomic regions from SNP 151075 to 151675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,520 DEBUG Processing 117/341 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,536 DEBUG Processing 95/517 atomic regions from SNP 28257 to 28857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,542 DEBUG Processing 505/520 atomic regions from SNP 151375 to 151975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:30,717 DEBUG Processing 118/341 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:30,791 DEBUG Processing 96/517 atomic regions from SNP 28557 to 29157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,837 DEBUG Processing 506/520 atomic regions from SNP 151675 to 152275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,078 DEBUG Processing 119/341 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,145 DEBUG Processing 97/517 atomic regions from SNP 28857 to 29457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,214 DEBUG Processing 507/520 atomic regions from SNP 151975 to 152575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,423 DEBUG Processing 120/341 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,481 DEBUG Processing 98/517 atomic regions from SNP 29157 to 29757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,549 DEBUG Processing 508/520 atomic regions from SNP 152275 to 152875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,636 DEBUG Processing 121/341 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,693 DEBUG Processing 99/517 atomic regions from SNP 29457 to 30057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,755 DEBUG Processing 509/520 atomic regions from SNP 152575 to 153175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:31,835 DEBUG Processing 122/341 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:31,887 DEBUG Processing 100/517 atomic regions from SNP 29757 to 30357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,959 DEBUG Processing 510/520 atomic regions from SNP 152875 to 153475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,031 DEBUG Processing 123/341 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,082 DEBUG Processing 101/517 atomic regions from SNP 30057 to 30657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,191 DEBUG Processing 511/520 atomic regions from SNP 153175 to 153775 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,272 DEBUG Processing 124/341 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,307 DEBUG Processing 102/517 atomic regions from SNP 30357 to 30957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,413 DEBUG Processing 512/520 atomic regions from SNP 153475 to 154075 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,462 DEBUG Processing 125/341 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,508 DEBUG Processing 103/517 atomic regions from SNP 30657 to 31257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,600 DEBUG Processing 513/520 atomic regions from SNP 153775 to 154375 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,623 DEBUG Processing 126/341 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,706 DEBUG Processing 104/517 atomic regions from SNP 30957 to 31557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,786 DEBUG Processing 127/341 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,789 DEBUG Processing 514/520 atomic regions from SNP 154075 to 154675 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:32,900 DEBUG Processing 105/517 atomic regions from SNP 31257 to 31857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,961 DEBUG Processing 128/341 atomic regions from SNP 38227 to 38827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:32,982 DEBUG Processing 515/520 atomic regions from SNP 154375 to 154975 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,094 DEBUG Processing 106/517 atomic regions from SNP 31557 to 32157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,125 DEBUG Processing 129/341 atomic regions from SNP 38527 to 39127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,179 DEBUG Processing 516/520 atomic regions from SNP 154675 to 155275 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,293 DEBUG Processing 107/517 atomic regions from SNP 31857 to 32457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,301 DEBUG Processing 130/341 atomic regions from SNP 38827 to 39427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,429 DEBUG Processing 517/520 atomic regions from SNP 154975 to 155575 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,567 DEBUG Processing 108/517 atomic regions from SNP 32157 to 32757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,573 DEBUG Processing 131/341 atomic regions from SNP 39127 to 39727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,693 DEBUG Processing 518/520 atomic regions from SNP 155275 to 155875 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:33,848 DEBUG Processing 109/517 atomic regions from SNP 32457 to 33057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,848 DEBUG Processing 132/341 atomic regions from SNP 39427 to 40027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:33,981 DEBUG Processing 519/520 atomic regions from SNP 155575 to 156175 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:34,114 DEBUG Processing 110/517 atomic regions from SNP 32757 to 33357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,117 DEBUG Processing 133/341 atomic regions from SNP 39727 to 40327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,267 DEBUG Processing 520/520 atomic regions from SNP 155875 to 156475 for chr17 (subchromosome 1 of 1). 2025-01-31 10:00:34,387 DEBUG Processing 134/341 atomic regions from SNP 40027 to 40627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,397 DEBUG Processing 111/517 atomic regions from SNP 33057 to 33657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,499 DEBUG Unique SNPs positions in subchromosome 1: 156476 2025-01-31 10:00:34,688 DEBUG Processing 135/341 atomic regions from SNP 40327 to 40927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,710 DEBUG Processing 112/517 atomic regions from SNP 33357 to 33957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,959 DEBUG Processing 136/341 atomic regions from SNP 40627 to 41227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:34,989 DEBUG Processing 113/517 atomic regions from SNP 33657 to 34257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,231 DEBUG Processing 137/341 atomic regions from SNP 40927 to 41527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,260 DEBUG Processing 114/517 atomic regions from SNP 33957 to 34557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,506 DEBUG Processing 138/341 atomic regions from SNP 41227 to 41827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,551 DEBUG Processing 115/517 atomic regions from SNP 34257 to 34857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,764 DEBUG Processing 139/341 atomic regions from SNP 41527 to 42127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:35,830 DEBUG Processing 116/517 atomic regions from SNP 34557 to 35157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,023 DEBUG Processing 140/341 atomic regions from SNP 41827 to 42427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,101 DEBUG Processing 117/517 atomic regions from SNP 34857 to 35457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,212 DEBUG Processing 141/341 atomic regions from SNP 42127 to 42727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,303 DEBUG Processing 118/517 atomic regions from SNP 35157 to 35757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,415 DEBUG Processing 142/341 atomic regions from SNP 42427 to 43027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,509 DEBUG Processing 119/517 atomic regions from SNP 35457 to 36057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,655 DEBUG Processing 143/341 atomic regions from SNP 42727 to 43327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:36,773 DEBUG Processing 120/517 atomic regions from SNP 35757 to 36357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,896 DEBUG Processing 144/341 atomic regions from SNP 43027 to 43627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,055 DEBUG Processing 121/517 atomic regions from SNP 36057 to 36657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,136 DEBUG Processing 145/341 atomic regions from SNP 43327 to 43927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,319 DEBUG Processing 122/517 atomic regions from SNP 36357 to 36957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,391 DEBUG Processing 146/341 atomic regions from SNP 43627 to 44227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,555 DEBUG Processing 123/517 atomic regions from SNP 36657 to 37257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,574 DEBUG Processing 147/341 atomic regions from SNP 43927 to 44527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,811 DEBUG Processing 148/341 atomic regions from SNP 44227 to 44827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:37,818 DEBUG Processing 124/517 atomic regions from SNP 36957 to 37557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,000 DEBUG Processing 149/341 atomic regions from SNP 44527 to 45127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,033 DEBUG Processing 125/517 atomic regions from SNP 37257 to 37857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,233 DEBUG Processing 150/341 atomic regions from SNP 44827 to 45427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,287 DEBUG Processing 126/517 atomic regions from SNP 37557 to 38157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,509 DEBUG Processing 151/341 atomic regions from SNP 45127 to 45727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,540 DEBUG Processing 127/517 atomic regions from SNP 37857 to 38457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,764 DEBUG Processing 152/341 atomic regions from SNP 45427 to 46027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:38,788 DEBUG Processing 128/517 atomic regions from SNP 38157 to 38757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,995 DEBUG Processing 153/341 atomic regions from SNP 45727 to 46327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,029 DEBUG Processing 129/517 atomic regions from SNP 38457 to 39057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,237 DEBUG Processing 154/341 atomic regions from SNP 46027 to 46627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,281 DEBUG Processing 130/517 atomic regions from SNP 38757 to 39357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,488 DEBUG Processing 155/341 atomic regions from SNP 46327 to 46927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,542 DEBUG Processing 131/517 atomic regions from SNP 39057 to 39657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,775 DEBUG Processing 156/341 atomic regions from SNP 46627 to 47227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:39,838 DEBUG Processing 132/517 atomic regions from SNP 39357 to 39957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:39,965 DEBUG Processing 157/341 atomic regions from SNP 46927 to 47527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,029 DEBUG Processing 133/517 atomic regions from SNP 39657 to 40257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,128 DEBUG Processing 158/341 atomic regions from SNP 47227 to 47827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,207 DEBUG Processing 134/517 atomic regions from SNP 39957 to 40557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,286 DEBUG Processing 159/341 atomic regions from SNP 47527 to 48127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,385 DEBUG Processing 135/517 atomic regions from SNP 40257 to 40857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,444 DEBUG Processing 160/341 atomic regions from SNP 47827 to 48427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,561 DEBUG Processing 136/517 atomic regions from SNP 40557 to 41157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,599 DEBUG Processing 161/341 atomic regions from SNP 48127 to 48727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:40,778 DEBUG Processing 137/517 atomic regions from SNP 40857 to 41457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:40,823 DEBUG Processing 162/341 atomic regions from SNP 48427 to 49027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,012 DEBUG Processing 138/517 atomic regions from SNP 41157 to 41757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,050 DEBUG Processing 163/341 atomic regions from SNP 48727 to 49327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,279 DEBUG Processing 139/517 atomic regions from SNP 41457 to 42057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,314 DEBUG Processing 164/341 atomic regions from SNP 49027 to 49627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,562 DEBUG Processing 140/517 atomic regions from SNP 41757 to 42357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,584 DEBUG Processing 165/341 atomic regions from SNP 49327 to 49927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:41,860 DEBUG Processing 141/517 atomic regions from SNP 42057 to 42657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:41,864 DEBUG Processing 166/341 atomic regions from SNP 49627 to 50227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,158 DEBUG Processing 142/517 atomic regions from SNP 42357 to 42957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,160 DEBUG Processing 167/341 atomic regions from SNP 49927 to 50527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,430 DEBUG Processing 168/341 atomic regions from SNP 50227 to 50827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,440 DEBUG Processing 143/517 atomic regions from SNP 42657 to 43257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,656 DEBUG Processing 169/341 atomic regions from SNP 50527 to 51127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,677 DEBUG Processing 144/517 atomic regions from SNP 42957 to 43557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:42,919 DEBUG Processing 170/341 atomic regions from SNP 50827 to 51427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:42,930 DEBUG Processing 145/517 atomic regions from SNP 43257 to 43857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,149 DEBUG Processing 171/341 atomic regions from SNP 51127 to 51727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,155 DEBUG Processing 146/517 atomic regions from SNP 43557 to 44157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,322 DEBUG Processing 172/341 atomic regions from SNP 51427 to 52027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,350 DEBUG Processing 147/517 atomic regions from SNP 43857 to 44457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,548 DEBUG Processing 173/341 atomic regions from SNP 51727 to 52327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,601 DEBUG Processing 148/517 atomic regions from SNP 44157 to 44757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,732 DEBUG Processing 174/341 atomic regions from SNP 52027 to 52627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:43,818 DEBUG Processing 149/517 atomic regions from SNP 44457 to 45057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:43,945 DEBUG Processing 175/341 atomic regions from SNP 52327 to 52927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,044 DEBUG Processing 150/517 atomic regions from SNP 44757 to 45357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,167 DEBUG Processing 176/341 atomic regions from SNP 52627 to 53227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,228 DEBUG Subchromosome time: 125.81141497893259, subchromosome SNPs: 156476 2025-01-31 10:00:44,228 DEBUG Estimated BADs: [1.66, 0.42, 6.65, 3.33, 1.66, 16.63, 1.66, 6.65, 1.66, 0.24, 0.55, 1.66, 4.99, 0.83, 0.33, 1.66, 6.65, 0.55, 1.66, 0.42, 1.66, 0.28, 3.33, 0.28] SNP counts: [20558, 11400, 10886, 5982, 1951, 605, 781, 2997, 1238, 5055, 6618, 2081, 5427, 9283, 2700, 906, 2491, 7717, 24889, 2987, 6292, 2405, 11719, 9508] SNP IDs counts: [20558, 11400, 10886, 5982, 1951, 605, 781, 2997, 1238, 5055, 6618, 2081, 5427, 9283, 2700, 906, 2491, 7717, 24889, 2987, 6292, 2405, 11719, 9508] Critical gap: 533311bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.87Mbp, 23.53Mbp, 29.38Mbp, 32.60Mbp, 33.82Mbp, 34.14Mbp, 34.59Mbp, 36.34Mbp, 37.08Mbp, 40.46Mbp, 44.42Mbp, 45.54Mbp, 48.47Mbp, 53.73Mbp, 55.47Mbp, 56.04Mbp, 57.36Mbp, 61.96Mbp, 76.00Mbp, 77.77Mbp, 81.25Mbp, 82.70Mbp, 89.10Mbp, 94.99Mbp] 2025-01-31 10:00:44,228 DEBUG chr17 time: 125.81197756400798 s 2025-01-31 10:00:44,328 DEBUG Processing 151/517 atomic regions from SNP 45057 to 45657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,357 DEBUG chr17: Fitting background model for 24 segments 2025-01-31 10:00:44,412 DEBUG Processing 177/341 atomic regions from SNP 52927 to 53527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,549 DEBUG Processing 152/517 atomic regions from SNP 45357 to 45957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,672 DEBUG Processing 178/341 atomic regions from SNP 53227 to 53827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:44,872 DEBUG Processing 153/517 atomic regions from SNP 45657 to 46257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:44,979 DEBUG Processing 179/341 atomic regions from SNP 53527 to 54127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,181 DEBUG Processing 154/517 atomic regions from SNP 45957 to 46557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,297 DEBUG Processing 180/341 atomic regions from SNP 53827 to 54427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,501 DEBUG Processing 155/517 atomic regions from SNP 46257 to 46857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,581 DEBUG Processing 181/341 atomic regions from SNP 54127 to 54727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:45,771 DEBUG Processing 156/517 atomic regions from SNP 46557 to 47157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:45,819 DEBUG Processing 182/341 atomic regions from SNP 54427 to 55027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,161 DEBUG Processing 157/517 atomic regions from SNP 46857 to 47457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,201 DEBUG Processing 183/341 atomic regions from SNP 54727 to 55327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,420 DEBUG Processing 158/517 atomic regions from SNP 47157 to 47757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,500 DEBUG Processing 184/341 atomic regions from SNP 55027 to 55627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,705 DEBUG Processing 159/517 atomic regions from SNP 47457 to 48057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:46,713 DEBUG Processing 185/341 atomic regions from SNP 55327 to 55927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,919 DEBUG Processing 186/341 atomic regions from SNP 55627 to 56227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:46,938 DEBUG Processing 160/517 atomic regions from SNP 47757 to 48357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,180 DEBUG Processing 187/341 atomic regions from SNP 55927 to 56527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,219 DEBUG Processing 161/517 atomic regions from SNP 48057 to 48657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,408 DEBUG Processing 188/341 atomic regions from SNP 56227 to 56827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,465 DEBUG Processing 162/517 atomic regions from SNP 48357 to 48957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,634 DEBUG Processing 189/341 atomic regions from SNP 56527 to 57127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,706 DEBUG Processing 163/517 atomic regions from SNP 48657 to 49257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:47,881 DEBUG Processing 190/341 atomic regions from SNP 56827 to 57427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:47,922 DEBUG Processing 164/517 atomic regions from SNP 48957 to 49557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,112 DEBUG Processing 191/341 atomic regions from SNP 57127 to 57727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,154 DEBUG Processing 165/517 atomic regions from SNP 49257 to 49857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,334 DEBUG Processing 192/341 atomic regions from SNP 57427 to 58027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,380 DEBUG Processing 166/517 atomic regions from SNP 49557 to 50157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,547 DEBUG Processing 193/341 atomic regions from SNP 57727 to 58327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,649 DEBUG Processing 167/517 atomic regions from SNP 49857 to 50457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:48,773 DEBUG Processing 194/341 atomic regions from SNP 58027 to 58627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:48,906 DEBUG Processing 168/517 atomic regions from SNP 50157 to 50757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,027 DEBUG Processing 195/341 atomic regions from SNP 58327 to 58927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,203 DEBUG Processing 169/517 atomic regions from SNP 50457 to 51057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,285 DEBUG Processing 196/341 atomic regions from SNP 58627 to 59227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,445 DEBUG Processing 170/517 atomic regions from SNP 50757 to 51357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,501 DEBUG Processing 197/341 atomic regions from SNP 58927 to 59527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,658 DEBUG Processing 171/517 atomic regions from SNP 51057 to 51657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,679 DEBUG Processing 198/341 atomic regions from SNP 59227 to 59827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:49,887 DEBUG Processing 172/517 atomic regions from SNP 51357 to 51957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:49,920 DEBUG Processing 199/341 atomic regions from SNP 59527 to 60127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,120 DEBUG Processing 200/341 atomic regions from SNP 59827 to 60427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,136 DEBUG Processing 173/517 atomic regions from SNP 51657 to 52257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,281 DEBUG Processing 201/341 atomic regions from SNP 60127 to 60727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,316 DEBUG Processing 174/517 atomic regions from SNP 51957 to 52557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,429 DEBUG Processing 202/341 atomic regions from SNP 60427 to 61027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,489 DEBUG Processing 175/517 atomic regions from SNP 52257 to 52857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,576 DEBUG Processing 203/341 atomic regions from SNP 60727 to 61327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,661 DEBUG Processing 176/517 atomic regions from SNP 52557 to 53157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,724 DEBUG Processing 204/341 atomic regions from SNP 61027 to 61627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:50,834 DEBUG Processing 177/517 atomic regions from SNP 52857 to 53457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:50,878 DEBUG Processing 205/341 atomic regions from SNP 61327 to 61927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,010 DEBUG Processing 178/517 atomic regions from SNP 53157 to 53757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,028 DEBUG Processing 206/341 atomic regions from SNP 61627 to 62227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,183 DEBUG Processing 207/341 atomic regions from SNP 61927 to 62527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,193 DEBUG Processing 179/517 atomic regions from SNP 53457 to 54057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,330 DEBUG Processing 208/341 atomic regions from SNP 62227 to 62827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,365 DEBUG Processing 180/517 atomic regions from SNP 53757 to 54357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,488 DEBUG Processing 209/341 atomic regions from SNP 62527 to 63127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,535 DEBUG Processing 181/517 atomic regions from SNP 54057 to 54657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,638 DEBUG Processing 210/341 atomic regions from SNP 62827 to 63427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,716 DEBUG Processing 182/517 atomic regions from SNP 54357 to 54957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,789 DEBUG Processing 211/341 atomic regions from SNP 63127 to 63727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:51,911 DEBUG Processing 183/517 atomic regions from SNP 54657 to 55257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:51,939 DEBUG Processing 212/341 atomic regions from SNP 63427 to 64027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,091 DEBUG Processing 213/341 atomic regions from SNP 63727 to 64327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,109 DEBUG Processing 184/517 atomic regions from SNP 54957 to 55557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,241 DEBUG Processing 214/341 atomic regions from SNP 64027 to 64627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,313 DEBUG Processing 185/517 atomic regions from SNP 55257 to 55857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,386 DEBUG Processing 215/341 atomic regions from SNP 64327 to 64927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,518 DEBUG Processing 186/517 atomic regions from SNP 55557 to 56157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,545 DEBUG Processing 216/341 atomic regions from SNP 64627 to 65227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,715 DEBUG Processing 217/341 atomic regions from SNP 64927 to 65527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,721 DEBUG Processing 187/517 atomic regions from SNP 55857 to 56457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:52,870 DEBUG Processing 218/341 atomic regions from SNP 65227 to 65827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:52,919 DEBUG Processing 188/517 atomic regions from SNP 56157 to 56757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,037 DEBUG Processing 219/341 atomic regions from SNP 65527 to 66127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,095 DEBUG Processing 189/517 atomic regions from SNP 56457 to 57057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,185 DEBUG Processing 220/341 atomic regions from SNP 65827 to 66427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,269 DEBUG Processing 190/517 atomic regions from SNP 56757 to 57357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,332 DEBUG Processing 221/341 atomic regions from SNP 66127 to 66727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,472 DEBUG Processing 191/517 atomic regions from SNP 57057 to 57657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,480 DEBUG Processing 222/341 atomic regions from SNP 66427 to 67027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,628 DEBUG Processing 223/341 atomic regions from SNP 66727 to 67327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,676 DEBUG Processing 192/517 atomic regions from SNP 57357 to 57957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,791 DEBUG Processing 224/341 atomic regions from SNP 67027 to 67627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:53,881 DEBUG Processing 193/517 atomic regions from SNP 57657 to 58257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:53,969 DEBUG Processing 225/341 atomic regions from SNP 67327 to 67927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,077 DEBUG Processing 194/517 atomic regions from SNP 57957 to 58557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,150 DEBUG Processing 226/341 atomic regions from SNP 67627 to 68227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,271 DEBUG Processing 195/517 atomic regions from SNP 58257 to 58857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,327 DEBUG Processing 227/341 atomic regions from SNP 67927 to 68527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,475 DEBUG Processing 196/517 atomic regions from SNP 58557 to 59157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,504 DEBUG Processing 228/341 atomic regions from SNP 68227 to 68827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,655 DEBUG Processing 229/341 atomic regions from SNP 68527 to 69127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,682 DEBUG Processing 197/517 atomic regions from SNP 58857 to 59457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,823 DEBUG Processing 230/341 atomic regions from SNP 68827 to 69427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:54,903 DEBUG Processing 198/517 atomic regions from SNP 59157 to 59757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:54,975 DEBUG Processing 231/341 atomic regions from SNP 69127 to 69727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,133 DEBUG Processing 199/517 atomic regions from SNP 59457 to 60057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,161 DEBUG Processing 232/341 atomic regions from SNP 69427 to 70027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,391 DEBUG Processing 200/517 atomic regions from SNP 59757 to 60357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,406 DEBUG Processing 233/341 atomic regions from SNP 69727 to 70327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,570 DEBUG Processing 234/341 atomic regions from SNP 70027 to 70627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,584 DEBUG Processing 201/517 atomic regions from SNP 60057 to 60657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:55,828 DEBUG Processing 235/341 atomic regions from SNP 70327 to 70927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:55,835 DEBUG Processing 202/517 atomic regions from SNP 60357 to 60957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,031 DEBUG Processing 236/341 atomic regions from SNP 70627 to 71227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,032 DEBUG Processing 203/517 atomic regions from SNP 60657 to 61257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,211 DEBUG Processing 237/341 atomic regions from SNP 70927 to 71527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,217 DEBUG Processing 204/517 atomic regions from SNP 60957 to 61557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,364 DEBUG Processing 238/341 atomic regions from SNP 71227 to 71827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,422 DEBUG Processing 205/517 atomic regions from SNP 61257 to 61857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,514 DEBUG Processing 239/341 atomic regions from SNP 71527 to 72127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,620 DEBUG Processing 206/517 atomic regions from SNP 61557 to 62157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,693 DEBUG Processing 240/341 atomic regions from SNP 71827 to 72427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:56,820 DEBUG Processing 207/517 atomic regions from SNP 61857 to 62457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:56,875 DEBUG Processing 241/341 atomic regions from SNP 72127 to 72727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,021 DEBUG Processing 208/517 atomic regions from SNP 62157 to 62757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,054 DEBUG Processing 242/341 atomic regions from SNP 72427 to 73027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,223 DEBUG Processing 209/517 atomic regions from SNP 62457 to 63057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,224 DEBUG Processing 243/341 atomic regions from SNP 72727 to 73327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,486 DEBUG Processing 210/517 atomic regions from SNP 62757 to 63357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,490 DEBUG Processing 244/341 atomic regions from SNP 73027 to 73627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,692 DEBUG Processing 211/517 atomic regions from SNP 63057 to 63657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,714 DEBUG Processing 245/341 atomic regions from SNP 73327 to 73927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:57,924 DEBUG Processing 212/517 atomic regions from SNP 63357 to 63957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:57,959 DEBUG Processing 246/341 atomic regions from SNP 73627 to 74227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,113 DEBUG Processing 213/517 atomic regions from SNP 63657 to 64257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,124 DEBUG Processing 247/341 atomic regions from SNP 73927 to 74527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,319 DEBUG Processing 214/517 atomic regions from SNP 63957 to 64557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,330 DEBUG Processing 248/341 atomic regions from SNP 74227 to 74827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,573 DEBUG Processing 249/341 atomic regions from SNP 74527 to 75127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,577 DEBUG Processing 215/517 atomic regions from SNP 64257 to 64857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:58,798 DEBUG Processing 250/341 atomic regions from SNP 74827 to 75427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:58,822 DEBUG Processing 216/517 atomic regions from SNP 64557 to 65157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,049 DEBUG Processing 217/517 atomic regions from SNP 64857 to 65457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,050 DEBUG Processing 251/341 atomic regions from SNP 75127 to 75727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,229 DEBUG Processing 252/341 atomic regions from SNP 75427 to 76027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,234 DEBUG Processing 218/517 atomic regions from SNP 65157 to 65757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,464 DEBUG Processing 219/517 atomic regions from SNP 65457 to 66057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,470 DEBUG Processing 253/341 atomic regions from SNP 75727 to 76327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,716 DEBUG Processing 220/517 atomic regions from SNP 65757 to 66357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,724 DEBUG Processing 254/341 atomic regions from SNP 76027 to 76627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:59,971 DEBUG Processing 221/517 atomic regions from SNP 66057 to 66657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:59,989 DEBUG Processing 255/341 atomic regions from SNP 76327 to 76927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,219 DEBUG Processing 222/517 atomic regions from SNP 66357 to 66957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,249 DEBUG Processing 256/341 atomic regions from SNP 76627 to 77227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,465 DEBUG Processing 223/517 atomic regions from SNP 66657 to 67257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,507 DEBUG Processing 257/341 atomic regions from SNP 76927 to 77527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,713 DEBUG Processing 224/517 atomic regions from SNP 66957 to 67557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,760 DEBUG Processing 258/341 atomic regions from SNP 77227 to 77827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:00,932 DEBUG Processing 225/517 atomic regions from SNP 67257 to 67857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:00,983 DEBUG Processing 259/341 atomic regions from SNP 77527 to 78127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,172 DEBUG Processing 226/517 atomic regions from SNP 67557 to 68157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,220 DEBUG Processing 260/341 atomic regions from SNP 77827 to 78427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,412 DEBUG Processing 227/517 atomic regions from SNP 67857 to 68457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,451 DEBUG Processing 261/341 atomic regions from SNP 78127 to 78727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,653 DEBUG Processing 228/517 atomic regions from SNP 68157 to 68757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,687 DEBUG Processing 262/341 atomic regions from SNP 78427 to 79027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:01,891 DEBUG Processing 229/517 atomic regions from SNP 68457 to 69057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:01,905 DEBUG Processing 263/341 atomic regions from SNP 78727 to 79327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,119 DEBUG Processing 264/341 atomic regions from SNP 79027 to 79627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,124 DEBUG Processing 230/517 atomic regions from SNP 68757 to 69357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,292 DEBUG Processing 265/341 atomic regions from SNP 79327 to 79927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,341 DEBUG Processing 231/517 atomic regions from SNP 69057 to 69657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,518 DEBUG Processing 266/341 atomic regions from SNP 79627 to 80227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,597 DEBUG Processing 232/517 atomic regions from SNP 69357 to 69957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,674 DEBUG Processing 267/341 atomic regions from SNP 79927 to 80527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,773 DEBUG Processing 233/517 atomic regions from SNP 69657 to 70257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,823 DEBUG Processing 268/341 atomic regions from SNP 80227 to 80827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:02,942 DEBUG Processing 234/517 atomic regions from SNP 69957 to 70557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:02,973 DEBUG Processing 269/341 atomic regions from SNP 80527 to 81127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,152 DEBUG Processing 235/517 atomic regions from SNP 70257 to 70857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,183 DEBUG Processing 270/341 atomic regions from SNP 80827 to 81427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,323 DEBUG Processing 236/517 atomic regions from SNP 70557 to 71157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,334 DEBUG Processing 271/341 atomic regions from SNP 81127 to 81727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,485 DEBUG Processing 272/341 atomic regions from SNP 81427 to 82027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,495 DEBUG Processing 237/517 atomic regions from SNP 70857 to 71457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,638 DEBUG Processing 273/341 atomic regions from SNP 81727 to 82327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,672 DEBUG Processing 238/517 atomic regions from SNP 71157 to 71757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:03,788 DEBUG Processing 274/341 atomic regions from SNP 82027 to 82627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:03,846 DEBUG Processing 239/517 atomic regions from SNP 71457 to 72057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,013 DEBUG Processing 275/341 atomic regions from SNP 82327 to 82927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,085 DEBUG Processing 240/517 atomic regions from SNP 71757 to 72357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,192 DEBUG Processing 276/341 atomic regions from SNP 82627 to 83227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,336 DEBUG Processing 241/517 atomic regions from SNP 72057 to 72657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,431 DEBUG Processing 277/341 atomic regions from SNP 82927 to 83527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,591 DEBUG Processing 242/517 atomic regions from SNP 72357 to 72957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,671 DEBUG Processing 278/341 atomic regions from SNP 83227 to 83827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:04,844 DEBUG Processing 243/517 atomic regions from SNP 72657 to 73257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:04,911 DEBUG Processing 279/341 atomic regions from SNP 83527 to 84127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,028 DEBUG Processing 244/517 atomic regions from SNP 72957 to 73557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,076 DEBUG Processing 280/341 atomic regions from SNP 83827 to 84427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,264 DEBUG Processing 245/517 atomic regions from SNP 73257 to 73857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,312 DEBUG Processing 281/341 atomic regions from SNP 84127 to 84727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,496 DEBUG Processing 246/517 atomic regions from SNP 73557 to 74157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,555 DEBUG Processing 282/341 atomic regions from SNP 84427 to 85027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,727 DEBUG Processing 247/517 atomic regions from SNP 73857 to 74457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:05,786 DEBUG Processing 283/341 atomic regions from SNP 84727 to 85327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:05,960 DEBUG Processing 248/517 atomic regions from SNP 74157 to 74757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,012 DEBUG Processing 284/341 atomic regions from SNP 85027 to 85627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,188 DEBUG Processing 249/517 atomic regions from SNP 74457 to 75057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,228 DEBUG Processing 285/341 atomic regions from SNP 85327 to 85927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,413 DEBUG Processing 250/517 atomic regions from SNP 74757 to 75357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,444 DEBUG Processing 286/341 atomic regions from SNP 85627 to 86227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,639 DEBUG Processing 251/517 atomic regions from SNP 75057 to 75657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,660 DEBUG Processing 287/341 atomic regions from SNP 85927 to 86527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:06,903 DEBUG Processing 252/517 atomic regions from SNP 75357 to 75957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:06,908 DEBUG Processing 288/341 atomic regions from SNP 86227 to 86827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,064 DEBUG Processing 289/341 atomic regions from SNP 86527 to 87127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,086 DEBUG Processing 253/517 atomic regions from SNP 75657 to 76257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,213 DEBUG Processing 290/341 atomic regions from SNP 86827 to 87427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,260 DEBUG Processing 254/517 atomic regions from SNP 75957 to 76557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,359 DEBUG Processing 291/341 atomic regions from SNP 87127 to 87727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,432 DEBUG Processing 255/517 atomic regions from SNP 76257 to 76857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,504 DEBUG Processing 292/341 atomic regions from SNP 87427 to 88027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,621 DEBUG Processing 256/517 atomic regions from SNP 76557 to 77157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,665 DEBUG Processing 293/341 atomic regions from SNP 87727 to 88327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,807 DEBUG Processing 257/517 atomic regions from SNP 76857 to 77457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:07,839 DEBUG Processing 294/341 atomic regions from SNP 88027 to 88627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:07,987 DEBUG Processing 258/517 atomic regions from SNP 77157 to 77757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,040 DEBUG Processing 295/341 atomic regions from SNP 88327 to 88927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,218 DEBUG Processing 259/517 atomic regions from SNP 77457 to 78057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,280 DEBUG Processing 296/341 atomic regions from SNP 88627 to 89227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,459 DEBUG Processing 260/517 atomic regions from SNP 77757 to 78357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,535 DEBUG Processing 297/341 atomic regions from SNP 88927 to 89527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:08,722 DEBUG Processing 261/517 atomic regions from SNP 78057 to 78657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:08,799 DEBUG Processing 298/341 atomic regions from SNP 89227 to 89827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,014 DEBUG Processing 262/517 atomic regions from SNP 78357 to 78957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,027 DEBUG Processing 299/341 atomic regions from SNP 89527 to 90127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,261 DEBUG Processing 300/341 atomic regions from SNP 89827 to 90427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,266 DEBUG Processing 263/517 atomic regions from SNP 78657 to 79257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,525 DEBUG Processing 301/341 atomic regions from SNP 90127 to 90727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,544 DEBUG Processing 264/517 atomic regions from SNP 78957 to 79557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:09,782 DEBUG Processing 302/341 atomic regions from SNP 90427 to 91027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:09,804 DEBUG Processing 265/517 atomic regions from SNP 79257 to 79857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,036 DEBUG Processing 303/341 atomic regions from SNP 90727 to 91327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,075 DEBUG Processing 266/517 atomic regions from SNP 79557 to 80157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,275 DEBUG Processing 304/341 atomic regions from SNP 91027 to 91627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,308 DEBUG Processing 267/517 atomic regions from SNP 79857 to 80457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,500 DEBUG Processing 305/341 atomic regions from SNP 91327 to 91927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,554 DEBUG Processing 268/517 atomic regions from SNP 80157 to 80757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:10,743 DEBUG Processing 306/341 atomic regions from SNP 91627 to 92227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:10,833 DEBUG Processing 269/517 atomic regions from SNP 80457 to 81057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,013 DEBUG Processing 307/341 atomic regions from SNP 91927 to 92527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,107 DEBUG Processing 270/517 atomic regions from SNP 80757 to 81357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,230 DEBUG Processing 308/341 atomic regions from SNP 92227 to 92827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,330 DEBUG Processing 271/517 atomic regions from SNP 81057 to 81657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,456 DEBUG Processing 309/341 atomic regions from SNP 92527 to 93127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,517 DEBUG Processing 272/517 atomic regions from SNP 81357 to 81957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,612 DEBUG Processing 310/341 atomic regions from SNP 92827 to 93427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,689 DEBUG Processing 273/517 atomic regions from SNP 81657 to 82257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,783 DEBUG Processing 311/341 atomic regions from SNP 93127 to 93727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:11,891 DEBUG Processing 274/517 atomic regions from SNP 81957 to 82557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:11,964 DEBUG Processing 312/341 atomic regions from SNP 93427 to 94027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,125 DEBUG Processing 275/517 atomic regions from SNP 82257 to 82857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,194 DEBUG Processing 313/341 atomic regions from SNP 93727 to 94327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,353 DEBUG Processing 276/517 atomic regions from SNP 82557 to 83157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,432 DEBUG Processing 314/341 atomic regions from SNP 94027 to 94627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,591 DEBUG Processing 277/517 atomic regions from SNP 82857 to 83457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,660 DEBUG Processing 315/341 atomic regions from SNP 94327 to 94927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,815 DEBUG Processing 278/517 atomic regions from SNP 83157 to 83757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:12,850 DEBUG Processing 316/341 atomic regions from SNP 94627 to 95227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:12,986 DEBUG Processing 279/517 atomic regions from SNP 83457 to 84057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,011 DEBUG Processing 317/341 atomic regions from SNP 94927 to 95527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,165 DEBUG Processing 280/517 atomic regions from SNP 83757 to 84357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,168 DEBUG Processing 318/341 atomic regions from SNP 95227 to 95827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,316 DEBUG Processing 319/341 atomic regions from SNP 95527 to 96127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,338 DEBUG Processing 281/517 atomic regions from SNP 84057 to 84657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,468 DEBUG Processing 320/341 atomic regions from SNP 95827 to 96427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,510 DEBUG Processing 282/517 atomic regions from SNP 84357 to 84957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,617 DEBUG Processing 321/341 atomic regions from SNP 96127 to 96727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,680 DEBUG Processing 283/517 atomic regions from SNP 84657 to 85257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,765 DEBUG Processing 322/341 atomic regions from SNP 96427 to 97027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:13,850 DEBUG Processing 284/517 atomic regions from SNP 84957 to 85557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:13,911 DEBUG Processing 323/341 atomic regions from SNP 96727 to 97327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,019 DEBUG Processing 285/517 atomic regions from SNP 85257 to 85857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,059 DEBUG Processing 324/341 atomic regions from SNP 97027 to 97627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,191 DEBUG Processing 286/517 atomic regions from SNP 85557 to 86157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,208 DEBUG Processing 325/341 atomic regions from SNP 97327 to 97927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,355 DEBUG Processing 326/341 atomic regions from SNP 97627 to 98227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,361 DEBUG Processing 287/517 atomic regions from SNP 85857 to 86457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,502 DEBUG Processing 327/341 atomic regions from SNP 97927 to 98527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,534 DEBUG Processing 288/517 atomic regions from SNP 86157 to 86757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,659 DEBUG Processing 328/341 atomic regions from SNP 98227 to 98827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,712 DEBUG Processing 289/517 atomic regions from SNP 86457 to 87057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,807 DEBUG Processing 329/341 atomic regions from SNP 98527 to 99127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:14,883 DEBUG Processing 290/517 atomic regions from SNP 86757 to 87357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:14,955 DEBUG Processing 330/341 atomic regions from SNP 98827 to 99427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,053 DEBUG Processing 291/517 atomic regions from SNP 87057 to 87657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:15,116 DEBUG Processing 331/341 atomic regions from SNP 99127 to 99727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,240 DEBUG Processing 292/517 atomic regions from SNP 87357 to 87957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:15,302 DEBUG Processing 332/341 atomic regions from SNP 99427 to 100027 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,411 DEBUG Processing 293/517 atomic regions from SNP 87657 to 88257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:15,448 DEBUG Processing 333/341 atomic regions from SNP 99727 to 100327 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,603 DEBUG Processing 334/341 atomic regions from SNP 100027 to 100627 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,606 DEBUG Processing 294/517 atomic regions from SNP 87957 to 88557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:15,752 DEBUG Processing 335/341 atomic regions from SNP 100327 to 100927 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,777 DEBUG Processing 295/517 atomic regions from SNP 88257 to 88857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:15,901 DEBUG Processing 336/341 atomic regions from SNP 100627 to 101227 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:15,949 DEBUG Processing 296/517 atomic regions from SNP 88557 to 89157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,048 DEBUG Processing 337/341 atomic regions from SNP 100927 to 101527 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,120 DEBUG Processing 297/517 atomic regions from SNP 88857 to 89457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,196 DEBUG Processing 338/341 atomic regions from SNP 101227 to 101827 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,290 DEBUG Processing 298/517 atomic regions from SNP 89157 to 89757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,345 DEBUG Processing 339/341 atomic regions from SNP 101527 to 102127 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,462 DEBUG Processing 299/517 atomic regions from SNP 89457 to 90057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,512 DEBUG Processing 340/341 atomic regions from SNP 101827 to 102427 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,633 DEBUG Processing 300/517 atomic regions from SNP 89757 to 90357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,663 DEBUG Processing 341/341 atomic regions from SNP 102127 to 102727 for chr19 (subchromosome 1 of 1). 2025-01-31 10:01:16,765 DEBUG Unique SNPs positions in subchromosome 1: 102728 2025-01-31 10:01:16,805 DEBUG Processing 301/517 atomic regions from SNP 90057 to 90657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:16,976 DEBUG Processing 302/517 atomic regions from SNP 90357 to 90957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,147 DEBUG Processing 303/517 atomic regions from SNP 90657 to 91257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,316 DEBUG Processing 304/517 atomic regions from SNP 90957 to 91557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,487 DEBUG Processing 305/517 atomic regions from SNP 91257 to 91857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,656 DEBUG Processing 306/517 atomic regions from SNP 91557 to 92157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,825 DEBUG Processing 307/517 atomic regions from SNP 91857 to 92457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:17,996 DEBUG Processing 308/517 atomic regions from SNP 92157 to 92757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,168 DEBUG Processing 309/517 atomic regions from SNP 92457 to 93057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,339 DEBUG Processing 310/517 atomic regions from SNP 92757 to 93357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,508 DEBUG Processing 311/517 atomic regions from SNP 93057 to 93657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,678 DEBUG Processing 312/517 atomic regions from SNP 93357 to 93957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,827 DEBUG Subchromosome time: 80.06183609901927, subchromosome SNPs: 102728 2025-01-31 10:01:18,828 DEBUG Estimated BADs: [3.48, 6.97, 0.58, 5.22, 0.35, 5.22, 0.44, 3.48, 0.58, 1.74, 0.87, 0.25, 0.87, 3.48, 0.58, 1.74, 0.44, 1.74, 0.58, 3.48, 0.58, 5.22, 1.74, 0.29, 1.74] SNP counts: [1397, 6686, 722, 1654, 741, 2120, 919, 809, 5799, 3642, 2407, 2383, 6637, 1791, 3613, 10795, 4485, 6034, 2095, 4793, 838, 6365, 3617, 4764, 17622] SNP IDs counts: [1397, 6686, 722, 1654, 741, 2120, 919, 809, 5799, 3642, 2407, 2383, 6637, 1791, 3613, 10795, 4485, 6034, 2095, 4793, 838, 6365, 3617, 4764, 17622] Critical gap: 416920bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 3.91Mbp, 7.62Mbp, 8.15Mbp, 9.14Mbp, 9.86Mbp, 10.99Mbp, 11.56Mbp, 12.02Mbp, 15.47Mbp, 17.46Mbp, 18.84Mbp, 20.23Mbp, 23.97Mbp, 24.94Mbp, 26.97Mbp, 32.91Mbp, 35.63Mbp, 38.94Mbp, 40.38Mbp, 42.94Mbp, 43.43Mbp, 46.86Mbp, 48.83Mbp, 51.65Mbp, 61.43Mbp] 2025-01-31 10:01:18,828 DEBUG chr19 time: 80.06230319000315 s 2025-01-31 10:01:18,846 DEBUG Processing 313/517 atomic regions from SNP 93657 to 94257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:18,887 DEBUG chr19: Fitting background model for 25 segments 2025-01-31 10:01:19,017 DEBUG Processing 314/517 atomic regions from SNP 93957 to 94557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,205 DEBUG Processing 315/517 atomic regions from SNP 94257 to 94857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,407 DEBUG Processing 316/517 atomic regions from SNP 94557 to 95157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,600 DEBUG Processing 317/517 atomic regions from SNP 94857 to 95457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,786 DEBUG Processing 318/517 atomic regions from SNP 95157 to 95757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:19,956 DEBUG Processing 319/517 atomic regions from SNP 95457 to 96057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,128 DEBUG Processing 320/517 atomic regions from SNP 95757 to 96357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,301 DEBUG Processing 321/517 atomic regions from SNP 96057 to 96657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,471 DEBUG Processing 322/517 atomic regions from SNP 96357 to 96957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,647 DEBUG Processing 323/517 atomic regions from SNP 96657 to 97257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,816 DEBUG Processing 324/517 atomic regions from SNP 96957 to 97557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:20,985 DEBUG Processing 325/517 atomic regions from SNP 97257 to 97857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,152 DEBUG Processing 326/517 atomic regions from SNP 97557 to 98157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,319 DEBUG Processing 327/517 atomic regions from SNP 97857 to 98457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,488 DEBUG Processing 328/517 atomic regions from SNP 98157 to 98757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,655 DEBUG Processing 329/517 atomic regions from SNP 98457 to 99057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,822 DEBUG Processing 330/517 atomic regions from SNP 98757 to 99357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:21,989 DEBUG Processing 331/517 atomic regions from SNP 99057 to 99657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,155 DEBUG Processing 332/517 atomic regions from SNP 99357 to 99957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,320 DEBUG Processing 333/517 atomic regions from SNP 99657 to 100257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,487 DEBUG Processing 334/517 atomic regions from SNP 99957 to 100557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,657 DEBUG Processing 335/517 atomic regions from SNP 100257 to 100857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,825 DEBUG Processing 336/517 atomic regions from SNP 100557 to 101157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:22,994 DEBUG Processing 337/517 atomic regions from SNP 100857 to 101457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,166 DEBUG Processing 338/517 atomic regions from SNP 101157 to 101757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,365 DEBUG Processing 339/517 atomic regions from SNP 101457 to 102057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,568 DEBUG Processing 340/517 atomic regions from SNP 101757 to 102357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,764 DEBUG Processing 341/517 atomic regions from SNP 102057 to 102657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:23,959 DEBUG Processing 342/517 atomic regions from SNP 102357 to 102957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,155 DEBUG Processing 343/517 atomic regions from SNP 102657 to 103257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,352 DEBUG Processing 344/517 atomic regions from SNP 102957 to 103557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,552 DEBUG Processing 345/517 atomic regions from SNP 103257 to 103857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,758 DEBUG Processing 346/517 atomic regions from SNP 103557 to 104157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:24,950 DEBUG Processing 347/517 atomic regions from SNP 103857 to 104457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,123 DEBUG Processing 348/517 atomic regions from SNP 104157 to 104757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,295 DEBUG Processing 349/517 atomic regions from SNP 104457 to 105057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,464 DEBUG Processing 350/517 atomic regions from SNP 104757 to 105357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,632 DEBUG Processing 351/517 atomic regions from SNP 105057 to 105657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,800 DEBUG Processing 352/517 atomic regions from SNP 105357 to 105957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:25,971 DEBUG Processing 353/517 atomic regions from SNP 105657 to 106257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,141 DEBUG Processing 354/517 atomic regions from SNP 105957 to 106557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,313 DEBUG Processing 355/517 atomic regions from SNP 106257 to 106857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,483 DEBUG Processing 356/517 atomic regions from SNP 106557 to 107157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,655 DEBUG Processing 357/517 atomic regions from SNP 106857 to 107457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:26,838 DEBUG Processing 358/517 atomic regions from SNP 107157 to 107757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,032 DEBUG Processing 359/517 atomic regions from SNP 107457 to 108057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,206 DEBUG Processing 360/517 atomic regions from SNP 107757 to 108357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,375 DEBUG Processing 361/517 atomic regions from SNP 108057 to 108657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,558 DEBUG Processing 362/517 atomic regions from SNP 108357 to 108957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,747 DEBUG Processing 363/517 atomic regions from SNP 108657 to 109257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:27,942 DEBUG Processing 364/517 atomic regions from SNP 108957 to 109557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,118 DEBUG Processing 365/517 atomic regions from SNP 109257 to 109857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,289 DEBUG Processing 366/517 atomic regions from SNP 109557 to 110157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,469 DEBUG Processing 367/517 atomic regions from SNP 109857 to 110457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,639 DEBUG Processing 368/517 atomic regions from SNP 110157 to 110757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,810 DEBUG Processing 369/517 atomic regions from SNP 110457 to 111057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:28,981 DEBUG Processing 370/517 atomic regions from SNP 110757 to 111357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,155 DEBUG Processing 371/517 atomic regions from SNP 111057 to 111657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,324 DEBUG Processing 372/517 atomic regions from SNP 111357 to 111957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,495 DEBUG Processing 373/517 atomic regions from SNP 111657 to 112257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,663 DEBUG Processing 374/517 atomic regions from SNP 111957 to 112557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:29,835 DEBUG Processing 375/517 atomic regions from SNP 112257 to 112857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,012 DEBUG Processing 376/517 atomic regions from SNP 112557 to 113157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,185 DEBUG Processing 377/517 atomic regions from SNP 112857 to 113457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,356 DEBUG Processing 378/517 atomic regions from SNP 113157 to 113757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,527 DEBUG Processing 379/517 atomic regions from SNP 113457 to 114057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,711 DEBUG Processing 380/517 atomic regions from SNP 113757 to 114357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:30,914 DEBUG Processing 381/517 atomic regions from SNP 114057 to 114657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,118 DEBUG Processing 382/517 atomic regions from SNP 114357 to 114957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,320 DEBUG Processing 383/517 atomic regions from SNP 114657 to 115257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,519 DEBUG Processing 384/517 atomic regions from SNP 114957 to 115557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,686 DEBUG Processing 385/517 atomic regions from SNP 115257 to 115857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:31,857 DEBUG Processing 386/517 atomic regions from SNP 115557 to 116157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,031 DEBUG Processing 387/517 atomic regions from SNP 115857 to 116457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,206 DEBUG Processing 388/517 atomic regions from SNP 116157 to 116757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,378 DEBUG Processing 389/517 atomic regions from SNP 116457 to 117057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,550 DEBUG Processing 390/517 atomic regions from SNP 116757 to 117357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,720 DEBUG Processing 391/517 atomic regions from SNP 117057 to 117657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:32,891 DEBUG Processing 392/517 atomic regions from SNP 117357 to 117957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,063 DEBUG Processing 393/517 atomic regions from SNP 117657 to 118257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,234 DEBUG Processing 394/517 atomic regions from SNP 117957 to 118557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,404 DEBUG Processing 395/517 atomic regions from SNP 118257 to 118857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,573 DEBUG Processing 396/517 atomic regions from SNP 118557 to 119157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,741 DEBUG Processing 397/517 atomic regions from SNP 118857 to 119457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:33,908 DEBUG Processing 398/517 atomic regions from SNP 119157 to 119757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,076 DEBUG Processing 399/517 atomic regions from SNP 119457 to 120057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,247 DEBUG Processing 400/517 atomic regions from SNP 119757 to 120357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,444 DEBUG Processing 401/517 atomic regions from SNP 120057 to 120657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,618 DEBUG Processing 402/517 atomic regions from SNP 120357 to 120957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,788 DEBUG Processing 403/517 atomic regions from SNP 120657 to 121257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:34,962 DEBUG Processing 404/517 atomic regions from SNP 120957 to 121557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,135 DEBUG Processing 405/517 atomic regions from SNP 121257 to 121857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,306 DEBUG Processing 406/517 atomic regions from SNP 121557 to 122157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,476 DEBUG Processing 407/517 atomic regions from SNP 121857 to 122457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,646 DEBUG Processing 408/517 atomic regions from SNP 122157 to 122757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,818 DEBUG Processing 409/517 atomic regions from SNP 122457 to 123057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:35,989 DEBUG Processing 410/517 atomic regions from SNP 122757 to 123357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,163 DEBUG Processing 411/517 atomic regions from SNP 123057 to 123657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,338 DEBUG Processing 412/517 atomic regions from SNP 123357 to 123957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,512 DEBUG Processing 413/517 atomic regions from SNP 123657 to 124257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,685 DEBUG Processing 414/517 atomic regions from SNP 123957 to 124557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:36,862 DEBUG Processing 415/517 atomic regions from SNP 124257 to 124857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,040 DEBUG Processing 416/517 atomic regions from SNP 124557 to 125157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,225 DEBUG Processing 417/517 atomic regions from SNP 124857 to 125457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,422 DEBUG Processing 418/517 atomic regions from SNP 125157 to 125757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,633 DEBUG Processing 419/517 atomic regions from SNP 125457 to 126057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:37,830 DEBUG Processing 420/517 atomic regions from SNP 125757 to 126357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,003 DEBUG Processing 421/517 atomic regions from SNP 126057 to 126657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,240 DEBUG Processing 422/517 atomic regions from SNP 126357 to 126957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,430 DEBUG Processing 423/517 atomic regions from SNP 126657 to 127257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,602 DEBUG Processing 424/517 atomic regions from SNP 126957 to 127557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,779 DEBUG Processing 425/517 atomic regions from SNP 127257 to 127857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:38,975 DEBUG Processing 426/517 atomic regions from SNP 127557 to 128157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,236 DEBUG Processing 427/517 atomic regions from SNP 127857 to 128457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,505 DEBUG Processing 428/517 atomic regions from SNP 128157 to 128757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:39,769 DEBUG Processing 429/517 atomic regions from SNP 128457 to 129057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,041 DEBUG Processing 430/517 atomic regions from SNP 128757 to 129357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,312 DEBUG Processing 431/517 atomic regions from SNP 129057 to 129657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,561 DEBUG Processing 432/517 atomic regions from SNP 129357 to 129957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,743 DEBUG Processing 433/517 atomic regions from SNP 129657 to 130257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:40,980 DEBUG Processing 434/517 atomic regions from SNP 129957 to 130557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,179 DEBUG Processing 435/517 atomic regions from SNP 130257 to 130857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,360 DEBUG Processing 436/517 atomic regions from SNP 130557 to 131157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,530 DEBUG Processing 437/517 atomic regions from SNP 130857 to 131457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,699 DEBUG Processing 438/517 atomic regions from SNP 131157 to 131757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:41,875 DEBUG Processing 439/517 atomic regions from SNP 131457 to 132057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,082 DEBUG Processing 440/517 atomic regions from SNP 131757 to 132357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,278 DEBUG Processing 441/517 atomic regions from SNP 132057 to 132657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,500 DEBUG Processing 442/517 atomic regions from SNP 132357 to 132957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:42,739 DEBUG Processing 443/517 atomic regions from SNP 132657 to 133257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,016 DEBUG Processing 444/517 atomic regions from SNP 132957 to 133557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,284 DEBUG Processing 445/517 atomic regions from SNP 133257 to 133857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,476 DEBUG Processing 446/517 atomic regions from SNP 133557 to 134157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,663 DEBUG Processing 447/517 atomic regions from SNP 133857 to 134457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:43,836 DEBUG Processing 448/517 atomic regions from SNP 134157 to 134757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,006 DEBUG Processing 449/517 atomic regions from SNP 134457 to 135057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,175 DEBUG Processing 450/517 atomic regions from SNP 134757 to 135357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,347 DEBUG Processing 451/517 atomic regions from SNP 135057 to 135657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,520 DEBUG Processing 452/517 atomic regions from SNP 135357 to 135957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,692 DEBUG Processing 453/517 atomic regions from SNP 135657 to 136257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:44,864 DEBUG Processing 454/517 atomic regions from SNP 135957 to 136557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,037 DEBUG Processing 455/517 atomic regions from SNP 136257 to 136857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,225 DEBUG Processing 456/517 atomic regions from SNP 136557 to 137157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,395 DEBUG Processing 457/517 atomic regions from SNP 136857 to 137457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,601 DEBUG Processing 458/517 atomic regions from SNP 137157 to 137757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:45,888 DEBUG Processing 459/517 atomic regions from SNP 137457 to 138057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,098 DEBUG Processing 460/517 atomic regions from SNP 137757 to 138357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,292 DEBUG Processing 461/517 atomic regions from SNP 138057 to 138657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,474 DEBUG Processing 462/517 atomic regions from SNP 138357 to 138957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,647 DEBUG Processing 463/517 atomic regions from SNP 138657 to 139257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:46,818 DEBUG Processing 464/517 atomic regions from SNP 138957 to 139557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,001 DEBUG Processing 465/517 atomic regions from SNP 139257 to 139857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,172 DEBUG Processing 466/517 atomic regions from SNP 139557 to 140157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,344 DEBUG Processing 467/517 atomic regions from SNP 139857 to 140457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,517 DEBUG Processing 468/517 atomic regions from SNP 140157 to 140757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,690 DEBUG Processing 469/517 atomic regions from SNP 140457 to 141057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:47,872 DEBUG Processing 470/517 atomic regions from SNP 140757 to 141357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,137 DEBUG Processing 471/517 atomic regions from SNP 141057 to 141657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,384 DEBUG Processing 472/517 atomic regions from SNP 141357 to 141957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,607 DEBUG Processing 473/517 atomic regions from SNP 141657 to 142257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,800 DEBUG Processing 474/517 atomic regions from SNP 141957 to 142557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:48,973 DEBUG Processing 475/517 atomic regions from SNP 142257 to 142857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,173 DEBUG Processing 476/517 atomic regions from SNP 142557 to 143157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,393 DEBUG Processing 477/517 atomic regions from SNP 142857 to 143457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,644 DEBUG Processing 478/517 atomic regions from SNP 143157 to 143757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:49,872 DEBUG Processing 479/517 atomic regions from SNP 143457 to 144057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,090 DEBUG Processing 480/517 atomic regions from SNP 143757 to 144357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,323 DEBUG Processing 481/517 atomic regions from SNP 144057 to 144657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,566 DEBUG Processing 482/517 atomic regions from SNP 144357 to 144957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,748 DEBUG Processing 483/517 atomic regions from SNP 144657 to 145257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:50,924 DEBUG Processing 484/517 atomic regions from SNP 144957 to 145557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,102 DEBUG Processing 485/517 atomic regions from SNP 145257 to 145857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,289 DEBUG Processing 486/517 atomic regions from SNP 145557 to 146157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,477 DEBUG Processing 487/517 atomic regions from SNP 145857 to 146457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,676 DEBUG Processing 488/517 atomic regions from SNP 146157 to 146757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:51,852 DEBUG Processing 489/517 atomic regions from SNP 146457 to 147057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,030 DEBUG Processing 490/517 atomic regions from SNP 146757 to 147357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,208 DEBUG Processing 491/517 atomic regions from SNP 147057 to 147657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,386 DEBUG Processing 492/517 atomic regions from SNP 147357 to 147957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,563 DEBUG Processing 493/517 atomic regions from SNP 147657 to 148257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,744 DEBUG Processing 494/517 atomic regions from SNP 147957 to 148557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:52,924 DEBUG Processing 495/517 atomic regions from SNP 148257 to 148857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,172 DEBUG Processing 496/517 atomic regions from SNP 148557 to 149157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,347 DEBUG Processing 497/517 atomic regions from SNP 148857 to 149457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,527 DEBUG Processing 498/517 atomic regions from SNP 149157 to 149757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,708 DEBUG Processing 499/517 atomic regions from SNP 149457 to 150057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:53,884 DEBUG Processing 500/517 atomic regions from SNP 149757 to 150357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,060 DEBUG Processing 501/517 atomic regions from SNP 150057 to 150657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,233 DEBUG Processing 502/517 atomic regions from SNP 150357 to 150957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,406 DEBUG Processing 503/517 atomic regions from SNP 150657 to 151257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,582 DEBUG Processing 504/517 atomic regions from SNP 150957 to 151557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,769 DEBUG Processing 505/517 atomic regions from SNP 151257 to 151857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:54,949 DEBUG Processing 506/517 atomic regions from SNP 151557 to 152157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,129 DEBUG Processing 507/517 atomic regions from SNP 151857 to 152457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,381 DEBUG Processing 508/517 atomic regions from SNP 152157 to 152757 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,612 DEBUG Processing 509/517 atomic regions from SNP 152457 to 153057 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:55,887 DEBUG Processing 510/517 atomic regions from SNP 152757 to 153357 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,133 DEBUG Processing 511/517 atomic regions from SNP 153057 to 153657 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,373 DEBUG Processing 512/517 atomic regions from SNP 153357 to 153957 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,554 DEBUG Processing 513/517 atomic regions from SNP 153657 to 154257 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,732 DEBUG Processing 514/517 atomic regions from SNP 153957 to 154557 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:56,908 DEBUG Processing 515/517 atomic regions from SNP 154257 to 154857 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,081 DEBUG Processing 516/517 atomic regions from SNP 154557 to 155157 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,255 DEBUG Processing 517/517 atomic regions from SNP 154857 to 155457 for chr18 (subchromosome 1 of 1). 2025-01-31 10:01:57,363 DEBUG Unique SNPs positions in subchromosome 1: 155458 2025-01-31 10:02:00,120 DEBUG Subchromosome time: 125.33479912404437, subchromosome SNPs: 155458 2025-01-31 10:02:00,121 DEBUG Estimated BADs: [1.31, 2.63, 1.31, 0.33, 1.31, 0.44, 2.63, 1.31, 5.26, 1.31, 2.63, 0.66, 2.63, 0.66, 5.26, 1.31, 5.26, 1.31, 5.26, 1.31, 0.44, 2.63, 1.31, 0.66] SNP counts: [3180, 3894, 15279, 6276, 12319, 8898, 1709, 2681, 5201, 1669, 3201, 12081, 1864, 16101, 301, 6647, 2352, 10210, 890, 6608, 3948, 8343, 13794, 8012] SNP IDs counts: [3180, 3894, 15279, 6276, 12319, 8898, 1709, 2681, 5201, 1669, 3201, 12081, 1864, 16101, 301, 6647, 2352, 10210, 890, 6608, 3948, 8343, 13794, 8012] Critical gap: 510097bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.92Mbp, 7.13Mbp, 15.79Mbp, 19.56Mbp, 26.48Mbp, 31.61Mbp, 32.52Mbp, 34.08Mbp, 36.80Mbp, 37.81Mbp, 39.49Mbp, 46.37Mbp, 47.38Mbp, 56.56Mbp, 56.73Mbp, 60.46Mbp, 61.69Mbp, 67.20Mbp, 67.67Mbp, 71.33Mbp, 73.57Mbp, 78.11Mbp, 85.72Mbp, 90.70Mbp] 2025-01-31 10:02:00,121 DEBUG chr18 time: 125.33527966705151 s 2025-01-31 10:02:00,212 DEBUG chr18: Fitting background model for 24 segments 2025-01-31 10:02:29,814 DEBUG Results of fit_background_model emitted. 2025-01-31 10:02:29,925 INFO Signal to noise fit: SPOT=0.39±0.21 2025-01-31 10:02:29,930 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:02:29,986 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:02:29,986 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:02:35,162 DEBUG chr5: Fitting background model for 1 segments 2025-01-31 10:02:48,858 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:02:48,926 INFO Signal to noise fit: SPOT=0.39±0.21 2025-01-31 10:02:48,930 INFO Final SPOT score: 0.39±0.21. Refitted 1 segments. 2025-01-31 10:02:48,978 INFO Estimating per-bp parameters of background model 2025-01-31 10:02:48,983 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:02:48,983 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:02:54,610 DEBUG chr5:3002500-5788751: Successfully fit background model for 2,447,741 bp. Use segment r for 0 bp 2025-01-31 10:02:54,914 DEBUG chr3:3000000-8624751: Successfully fit background model for 4,851,900 bp. Use segment r for 0 bp 2025-01-31 10:02:55,059 DEBUG chr3:8624751-10131251: Successfully fit background model for 1,386,423 bp. Use segment r for 0 bp 2025-01-31 10:02:55,138 DEBUG chr4:3050000-6882751: Successfully fit background model for 3,192,467 bp. Use segment r for 1,815 bp 2025-01-31 10:02:55,286 DEBUG chr4:6882751-8516751: Successfully fit background model for 1,407,269 bp. Use segment r for 0 bp 2025-01-31 10:02:55,792 DEBUG chr2:3051000-7376251: Successfully fit background model for 4,088,880 bp. Use segment r for 0 bp 2025-01-31 10:02:55,983 DEBUG chr2:7376251-9370251: Successfully fit background model for 1,766,835 bp. Use segment r for 0 bp 2025-01-31 10:02:56,066 DEBUG chr4:8516751-15437251: Successfully fit background model for 6,261,045 bp. Use segment r for 0 bp 2025-01-31 10:02:56,107 DEBUG chrX:3055000-7303251: Successfully fit background model for 1,765,499 bp. Use segment r for 1,082 bp 2025-01-31 10:02:56,324 DEBUG chrX:7303251-9651751: Successfully fit background model for 1,913,112 bp. Use segment r for 0 bp 2025-01-31 10:02:56,568 DEBUG chrX:9651751-11796751: Successfully fit background model for 1,968,024 bp. Use segment r for 0 bp 2025-01-31 10:02:56,743 DEBUG chr2:9370251-15352251: Successfully fit background model for 5,466,629 bp. Use segment r for 0 bp 2025-01-31 10:02:56,747 DEBUG chrX:11796751-13584751: Successfully fit background model for 1,688,766 bp. Use segment r for 0 bp 2025-01-31 10:02:56,969 DEBUG chr1:3000500-9540751: Successfully fit background model for 5,697,060 bp. Use segment r for 0 bp 2025-01-31 10:02:56,992 DEBUG chr2:15352251-18019251: Successfully fit background model for 2,374,251 bp. Use segment r for 0 bp 2025-01-31 10:02:57,022 DEBUG chr2:18019251-18097001: Successfully fit background model for 76,690 bp. Use segment r for 0 bp 2025-01-31 10:02:57,023 DEBUG chr1:9540751-9979251: Successfully fit background model for 423,349 bp. Use segment r for 0 bp 2025-01-31 10:02:57,105 DEBUG chr3:10131251-19160251: Successfully fit background model for 7,593,427 bp. Use segment r for 15,898 bp 2025-01-31 10:02:57,185 DEBUG chrX:13584751-17198751: Successfully fit background model for 3,144,410 bp. Use segment r for 0 bp 2025-01-31 10:02:57,188 DEBUG chr3:19160251-19881751: Successfully fit background model for 668,176 bp. Use segment r for 0 bp 2025-01-31 10:02:57,351 DEBUG chr1:9979251-13114251: Successfully fit background model for 2,808,329 bp. Use segment r for 0 bp 2025-01-31 10:02:57,396 DEBUG chr1:13114251-13523751: Successfully fit background model for 388,806 bp. Use segment r for 0 bp 2025-01-31 10:02:57,503 DEBUG chrX:17198751-20616251: Successfully fit background model for 2,896,474 bp. Use segment r for 0 bp 2025-01-31 10:02:57,599 DEBUG chrX:20616251-21509251: Successfully fit background model for 801,479 bp. Use segment r for 0 bp 2025-01-31 10:02:57,727 DEBUG chr1:13523751-16618251: Successfully fit background model for 2,785,234 bp. Use segment r for 0 bp 2025-01-31 10:02:57,752 DEBUG chr2:18097001-24916251: Successfully fit background model for 6,070,378 bp. Use segment r for 0 bp 2025-01-31 10:02:57,932 DEBUG chr5:5788751-20867251: Successfully fit background model for 12,021,222 bp. Use segment r for 4,286 bp 2025-01-31 10:02:58,122 DEBUG chr3:19881751-26921251: Successfully fit background model for 6,140,182 bp. Use segment r for 0 bp 2025-01-31 10:02:58,174 DEBUG chr5:20867251-23400751: Successfully fit background model for 2,312,758 bp. Use segment r for 0 bp 2025-01-31 10:02:58,370 DEBUG chr5:23400751-25543751: Successfully fit background model for 2,041,947 bp. Use segment r for 0 bp 2025-01-31 10:02:58,559 DEBUG chr4:15437251-32772751: Successfully fit background model for 15,390,643 bp. Use segment r for 0 bp 2025-01-31 10:02:58,589 DEBUG chr5:25543751-28030751: Successfully fit background model for 2,164,826 bp. Use segment r for 0 bp 2025-01-31 10:02:58,594 DEBUG chrX:21509251-26910501: Successfully fit background model for 2,796,252 bp. Use segment r for 6,081 bp 2025-01-31 10:02:58,770 DEBUG chr4:32772751-34774751: Successfully fit background model for 1,873,395 bp. Use segment r for 0 bp 2025-01-31 10:02:58,786 DEBUG chr5:28030751-30194501: Successfully fit background model for 1,994,644 bp. Use segment r for 0 bp 2025-01-31 10:02:58,886 DEBUG chr5:30194501-31242251: Successfully fit background model for 965,465 bp. Use segment r for 0 bp 2025-01-31 10:02:59,054 DEBUG chr4:34774751-37392751: Successfully fit background model for 2,371,403 bp. Use segment r for 0 bp 2025-01-31 10:02:59,170 DEBUG chr2:24916251-36254751: Successfully fit background model for 11,017,660 bp. Use segment r for 0 bp 2025-01-31 10:02:59,256 DEBUG chr2:36254751-36954501: Successfully fit background model for 582,627 bp. Use segment r for 0 bp 2025-01-31 10:02:59,296 DEBUG chr4:37392751-40133251: Successfully fit background model for 2,397,619 bp. Use segment r for 0 bp 2025-01-31 10:02:59,469 DEBUG chr2:36954501-39374251: Successfully fit background model for 2,252,932 bp. Use segment r for 0 bp 2025-01-31 10:02:59,488 DEBUG chr4:40133251-41857501: Successfully fit background model for 1,563,855 bp. Use segment r for 0 bp 2025-01-31 10:02:59,626 DEBUG chr3:26921251-37863751: Successfully fit background model for 10,130,996 bp. Use segment r for 0 bp 2025-01-31 10:02:59,710 DEBUG chr1:16618251-30796251: Successfully fit background model for 12,660,143 bp. Use segment r for 0 bp 2025-01-31 10:02:59,750 DEBUG chr1:30796251-30952251: Successfully fit background model for 142,365 bp. Use segment r for 0 bp 2025-01-31 10:02:59,814 DEBUG chr5:31242251-38972751: Successfully fit background model for 7,361,527 bp. Use segment r for 0 bp 2025-01-31 10:02:59,916 DEBUG chr4:42724000-47049251: Successfully fit background model for 4,099,176 bp. Use segment r for 0 bp 2025-01-31 10:02:59,922 DEBUG chr2:39374251-44238251: Successfully fit background model for 4,438,072 bp. Use segment r for 0 bp 2025-01-31 10:02:59,994 DEBUG chrX:31132500-39090251: Successfully fit background model for 2,974,976 bp. Use segment r for 1,746 bp 2025-01-31 10:03:00,007 DEBUG chr1:30952251-33445251: Successfully fit background model for 2,177,568 bp. Use segment r for 0 bp 2025-01-31 10:03:00,074 DEBUG chr2:44238251-45851751: Successfully fit background model for 1,544,736 bp. Use segment r for 0 bp 2025-01-31 10:03:00,075 DEBUG chr4:47049251-48693251: Successfully fit background model for 1,580,997 bp. Use segment r for 0 bp 2025-01-31 10:03:00,146 DEBUG chr1:33445251-34898251: Successfully fit background model for 1,382,934 bp. Use segment r for 0 bp 2025-01-31 10:03:00,199 DEBUG chr5:38972751-43197751: Successfully fit background model for 3,741,027 bp. Use segment r for 0 bp 2025-01-31 10:03:00,253 DEBUG chr1:34898251-36009251: Successfully fit background model for 1,019,059 bp. Use segment r for 0 bp 2025-01-31 10:03:00,255 DEBUG chr2:45851751-47863751: Successfully fit background model for 1,799,535 bp. Use segment r for 0 bp 2025-01-31 10:03:00,268 DEBUG chr3:37863751-42479251: Successfully fit background model for 4,129,185 bp. Use segment r for 5,196 bp 2025-01-31 10:03:00,349 DEBUG chr1:36009251-36959751: Successfully fit background model for 920,106 bp. Use segment r for 0 bp 2025-01-31 10:03:00,468 DEBUG chr5:43197751-45859751: Successfully fit background model for 2,462,605 bp. Use segment r for 0 bp 2025-01-31 10:03:00,503 DEBUG chr4:48693251-52956751: Successfully fit background model for 3,772,379 bp. Use segment r for 0 bp 2025-01-31 10:03:00,593 DEBUG chr1:36959751-39366751: Successfully fit background model for 2,326,904 bp. Use segment r for 0 bp 2025-01-31 10:03:00,793 DEBUG chr3:42479251-48129751: Successfully fit background model for 5,002,946 bp. Use segment r for 0 bp 2025-01-31 10:03:00,801 DEBUG chr2:47863751-53301251: Successfully fit background model for 5,141,335 bp. Use segment r for 0 bp 2025-01-31 10:03:00,926 DEBUG chrX:39090251-48015251: Successfully fit background model for 7,710,369 bp. Use segment r for 0 bp 2025-01-31 10:03:00,976 DEBUG chr5:45859751-51091751: Successfully fit background model for 4,782,550 bp. Use segment r for 0 bp 2025-01-31 10:03:01,072 DEBUG chr1:39366751-44101251: Successfully fit background model for 4,531,715 bp. Use segment r for 0 bp 2025-01-31 10:03:01,079 DEBUG chr4:52956751-58886251: Successfully fit background model for 5,565,802 bp. Use segment r for 0 bp 2025-01-31 10:03:01,090 DEBUG chr1:44101251-44175251: Successfully fit background model for 72,846 bp. Use segment r for 0 bp 2025-01-31 10:03:01,095 DEBUG chr3:48129751-51156751: Successfully fit background model for 2,686,536 bp. Use segment r for 0 bp 2025-01-31 10:03:01,151 DEBUG chr3:51156751-51681751: Successfully fit background model for 504,134 bp. Use segment r for 0 bp 2025-01-31 10:03:01,167 DEBUG chrX:48015251-50560751: Successfully fit background model for 2,194,875 bp. Use segment r for 0 bp 2025-01-31 10:03:01,194 DEBUG chrX:50560751-50639751: Successfully fit background model for 72,764 bp. Use segment r for 0 bp 2025-01-31 10:03:01,209 DEBUG chr4:58886251-60192751: Successfully fit background model for 1,110,215 bp. Use segment r for 0 bp 2025-01-31 10:03:01,221 DEBUG chr2:53301251-56541751: Successfully fit background model for 2,770,971 bp. Use segment r for 80 bp 2025-01-31 10:03:01,259 DEBUG chr5:51091751-54328251: Successfully fit background model for 3,109,234 bp. Use segment r for 0 bp 2025-01-31 10:03:01,647 DEBUG chr2:56541751-61096751: Successfully fit background model for 4,199,814 bp. Use segment r for 0 bp 2025-01-31 10:03:01,758 DEBUG chr4:60192751-63996251: Successfully fit background model for 2,080,894 bp. Use segment r for 13,604 bp 2025-01-31 10:03:01,899 DEBUG chr1:44175251-52097751: Successfully fit background model for 6,889,820 bp. Use segment r for 0 bp 2025-01-31 10:03:01,964 DEBUG chr1:52097751-52624251: Successfully fit background model for 487,538 bp. Use segment r for 0 bp 2025-01-31 10:03:02,114 DEBUG chr2:61096751-66356251: Successfully fit background model for 4,900,446 bp. Use segment r for 0 bp 2025-01-31 10:03:02,159 DEBUG chr5:54328251-63500251: Successfully fit background model for 8,117,495 bp. Use segment r for 0 bp 2025-01-31 10:03:02,195 DEBUG chr1:52624251-55008251: Successfully fit background model for 2,156,403 bp. Use segment r for 0 bp 2025-01-31 10:03:02,223 DEBUG chr1:55008251-55242751: Successfully fit background model for 227,232 bp. Use segment r for 0 bp 2025-01-31 10:03:02,254 DEBUG chr2:66356251-67921751: Successfully fit background model for 1,437,366 bp. Use segment r for 0 bp 2025-01-31 10:03:02,262 DEBUG chr4:63996251-69370001: Successfully fit background model for 4,852,675 bp. Use segment r for 0 bp 2025-01-31 10:03:02,384 DEBUG chr4:69370001-70602251: Successfully fit background model for 1,093,672 bp. Use segment r for 0 bp 2025-01-31 10:03:02,420 DEBUG chr2:67921751-69787751: Successfully fit background model for 1,754,216 bp. Use segment r for 0 bp 2025-01-31 10:03:02,521 DEBUG chr1:55242751-58389251: Successfully fit background model for 2,929,692 bp. Use segment r for 0 bp 2025-01-31 10:03:02,621 DEBUG chr5:63500251-68424251: Successfully fit background model for 4,665,644 bp. Use segment r for 0 bp 2025-01-31 10:03:02,661 DEBUG chr4:70602251-73594251: Successfully fit background model for 2,612,453 bp. Use segment r for 0 bp 2025-01-31 10:03:02,756 DEBUG chr2:69787751-73434751: Successfully fit background model for 3,544,298 bp. Use segment r for 0 bp 2025-01-31 10:03:02,922 DEBUG chr5:68424251-71729251: Successfully fit background model for 2,904,102 bp. Use segment r for 0 bp 2025-01-31 10:03:02,940 DEBUG chr4:73594251-76642251: Successfully fit background model for 2,575,972 bp. Use segment r for 0 bp 2025-01-31 10:03:03,144 DEBUG chr1:58389251-65205251: Successfully fit background model for 6,396,449 bp. Use segment r for 0 bp 2025-01-31 10:03:03,235 DEBUG chr3:51681751-70978251: Successfully fit background model for 17,476,230 bp. Use segment r for 0 bp 2025-01-31 10:03:03,438 DEBUG chr2:73434751-80948751: Successfully fit background model for 7,124,669 bp. Use segment r for 0 bp 2025-01-31 10:03:03,545 DEBUG chr5:71729251-77776251: Successfully fit background model for 5,722,817 bp. Use segment r for 0 bp 2025-01-31 10:03:03,640 DEBUG chr4:76642251-81672751: Successfully fit background model for 4,534,040 bp. Use segment r for 2,900 bp 2025-01-31 10:03:03,676 DEBUG chrX:50639751-72977751: Successfully fit background model for 18,241,388 bp. Use segment r for 0 bp 2025-01-31 10:03:03,759 DEBUG chr2:80948751-84649251: Successfully fit background model for 3,141,073 bp. Use segment r for 0 bp 2025-01-31 10:03:03,764 DEBUG chr1:65205251-72209751: Successfully fit background model for 6,458,164 bp. Use segment r for 0 bp 2025-01-31 10:03:03,787 DEBUG chr1:72209751-72314251: Successfully fit background model for 101,371 bp. Use segment r for 0 bp 2025-01-31 10:03:03,804 DEBUG chr3:70978251-74983501: Successfully fit background model for 3,536,035 bp. Use segment r for 2,683 bp 2025-01-31 10:03:03,825 DEBUG chr2:84649251-85281251: Successfully fit background model for 602,538 bp. Use segment r for 0 bp 2025-01-31 10:03:03,829 DEBUG chrX:72977751-74317751: Successfully fit background model for 1,120,796 bp. Use segment r for 0 bp 2025-01-31 10:03:03,874 DEBUG chr4:81672751-84272751: Successfully fit background model for 2,366,420 bp. Use segment r for 0 bp 2025-01-31 10:03:03,977 DEBUG chr5:77776251-82714251: Successfully fit background model for 4,432,167 bp. Use segment r for 0 bp 2025-01-31 10:03:03,982 DEBUG chr1:72314251-74235251: Successfully fit background model for 1,819,365 bp. Use segment r for 0 bp 2025-01-31 10:03:04,081 DEBUG chr4:84272751-86573251: Successfully fit background model for 2,176,875 bp. Use segment r for 0 bp 2025-01-31 10:03:04,106 DEBUG chr1:74235251-75560751: Successfully fit background model for 1,228,037 bp. Use segment r for 0 bp 2025-01-31 10:03:04,132 DEBUG chrX:74317751-77423251: Successfully fit background model for 2,389,917 bp. Use segment r for 0 bp 2025-01-31 10:03:04,216 DEBUG chr3:74983501-79510251: Successfully fit background model for 4,064,263 bp. Use segment r for 0 bp 2025-01-31 10:03:04,236 DEBUG chr2:85281251-89570751: Successfully fit background model for 3,743,956 bp. Use segment r for 0 bp 2025-01-31 10:03:04,292 DEBUG chr3:79510251-80252251: Successfully fit background model for 677,887 bp. Use segment r for 0 bp 2025-01-31 10:03:04,352 DEBUG chr4:86573251-89560751: Successfully fit background model for 2,665,970 bp. Use segment r for 0 bp 2025-01-31 10:03:04,354 DEBUG chr2:89570751-90845251: Successfully fit background model for 956,563 bp. Use segment r for 0 bp 2025-01-31 10:03:04,406 DEBUG chr3:80252251-81475751: Successfully fit background model for 1,112,080 bp. Use segment r for 0 bp 2025-01-31 10:03:04,535 DEBUG chr5:82714251-88542251: Successfully fit background model for 5,148,838 bp. Use segment r for 0 bp 2025-01-31 10:03:04,625 DEBUG chr3:81475751-84009251: Successfully fit background model for 2,353,351 bp. Use segment r for 0 bp 2025-01-31 10:03:04,636 DEBUG chr4:89560751-92718751: Successfully fit background model for 2,769,192 bp. Use segment r for 0 bp 2025-01-31 10:03:04,716 DEBUG chr2:90845251-94620001: Successfully fit background model for 3,681,760 bp. Use segment r for 0 bp 2025-01-31 10:03:04,785 DEBUG chr1:75560751-82712251: Successfully fit background model for 6,599,672 bp. Use segment r for 0 bp 2025-01-31 10:03:04,854 DEBUG chr1:82712251-83334751: Successfully fit background model for 598,118 bp. Use segment r for 0 bp 2025-01-31 10:03:04,917 DEBUG chr4:92718751-95883251: Successfully fit background model for 2,870,719 bp. Use segment r for 0 bp 2025-01-31 10:03:04,964 DEBUG chr3:84009251-87727751: Successfully fit background model for 3,540,996 bp. Use segment r for 0 bp 2025-01-31 10:03:04,994 DEBUG chr1:83334751-84837751: Successfully fit background model for 1,348,351 bp. Use segment r for 0 bp 2025-01-31 10:03:05,036 DEBUG chr4:95883251-97119751: Successfully fit background model for 1,082,797 bp. Use segment r for 0 bp 2025-01-31 10:03:05,139 DEBUG chr1:84837751-86354251: Successfully fit background model for 975,788 bp. Use segment r for 0 bp 2025-01-31 10:03:05,167 DEBUG chr1:86354251-86587751: Successfully fit background model for 228,082 bp. Use segment r for 0 bp 2025-01-31 10:03:05,202 DEBUG chr3:87727751-90429751: Successfully fit background model for 2,566,462 bp. Use segment r for 0 bp 2025-01-31 10:03:05,550 DEBUG chr3:90429751-94308251: Successfully fit background model for 2,968,837 bp. Use segment r for 0 bp 2025-01-31 10:03:05,630 DEBUG chr2:94620001-101157251: Successfully fit background model for 5,435,930 bp. Use segment r for 10,221 bp 2025-01-31 10:03:05,650 DEBUG chr4:97119751-103624251: Successfully fit background model for 6,076,450 bp. Use segment r for 0 bp 2025-01-31 10:03:05,698 DEBUG chrX:77423251-92018751: Successfully fit background model for 12,413,344 bp. Use segment r for 0 bp 2025-01-31 10:03:05,756 DEBUG chr1:86587751-92822751: Successfully fit background model for 5,970,609 bp. Use segment r for 0 bp 2025-01-31 10:03:05,775 DEBUG chr3:94308251-96791251: Successfully fit background model for 2,280,144 bp. Use segment r for 0 bp 2025-01-31 10:03:05,859 DEBUG chr1:92822751-93833251: Successfully fit background model for 984,170 bp. Use segment r for 0 bp 2025-01-31 10:03:05,863 DEBUG chrX:92018751-93626251: Successfully fit background model for 1,375,731 bp. Use segment r for 0 bp 2025-01-31 10:03:05,906 DEBUG chr4:103624251-106442251: Successfully fit background model for 2,685,147 bp. Use segment r for 0 bp 2025-01-31 10:03:05,917 DEBUG chr5:88542251-97561251: Successfully fit background model for 6,301,327 bp. Use segment r for 7,421 bp 2025-01-31 10:03:05,982 DEBUG chrX:93626251-94825251: Successfully fit background model for 1,057,651 bp. Use segment r for 0 bp 2025-01-31 10:03:06,061 DEBUG chr2:101157251-106177251: Successfully fit background model for 4,800,321 bp. Use segment r for 0 bp 2025-01-31 10:03:06,103 DEBUG chr3:96791251-100358251: Successfully fit background model for 3,144,624 bp. Use segment r for 0 bp 2025-01-31 10:03:06,141 DEBUG chr5:97561251-99975751: Successfully fit background model for 2,283,777 bp. Use segment r for 0 bp 2025-01-31 10:03:06,199 DEBUG chr4:106442251-109680251: Successfully fit background model for 3,095,738 bp. Use segment r for 0 bp 2025-01-31 10:03:06,314 DEBUG chr1:93833251-98648251: Successfully fit background model for 4,109,906 bp. Use segment r for 0 bp 2025-01-31 10:03:06,353 DEBUG chr5:99975751-102188751: Successfully fit background model for 2,106,576 bp. Use segment r for 0 bp 2025-01-31 10:03:06,403 DEBUG chr4:109680251-111900251: Successfully fit background model for 1,992,267 bp. Use segment r for 0 bp 2025-01-31 10:03:06,406 DEBUG chrX:94825251-99315251: Successfully fit background model for 3,778,944 bp. Use segment r for 0 bp 2025-01-31 10:03:06,526 DEBUG chr5:102188751-103394751: Successfully fit background model for 1,104,783 bp. Use segment r for 499 bp 2025-01-31 10:03:06,600 DEBUG chr5:103394751-104091751: Successfully fit background model for 663,792 bp. Use segment r for 0 bp 2025-01-31 10:03:06,640 DEBUG chr2:106177251-112238251: Successfully fit background model for 5,406,043 bp. Use segment r for 0 bp 2025-01-31 10:03:06,695 DEBUG chr4:111900251-113952751: Successfully fit background model for 1,784,845 bp. Use segment r for 6,470 bp 2025-01-31 10:03:06,725 DEBUG chr5:104091751-105397251: Successfully fit background model for 1,041,672 bp. Use segment r for 0 bp 2025-01-31 10:03:06,847 DEBUG chr4:113952751-115038251: Successfully fit background model for 994,375 bp. Use segment r for 3,111 bp 2025-01-31 10:03:06,855 DEBUG chr1:98648251-104432251: Successfully fit background model for 5,071,852 bp. Use segment r for 0 bp 2025-01-31 10:03:06,862 DEBUG chr2:112238251-114714751: Successfully fit background model for 2,293,687 bp. Use segment r for 0 bp 2025-01-31 10:03:06,863 DEBUG chr4:115038251-115106251: Successfully fit background model for 67,190 bp. Use segment r for 0 bp 2025-01-31 10:03:06,932 DEBUG chr4:115106251-115817751: Successfully fit background model for 537,753 bp. Use segment r for 0 bp 2025-01-31 10:03:07,028 DEBUG chr2:114714751-116556251: Successfully fit background model for 1,722,915 bp. Use segment r for 0 bp 2025-01-31 10:03:07,034 DEBUG chr5:105397251-108759751: Successfully fit background model for 3,230,258 bp. Use segment r for 0 bp 2025-01-31 10:03:07,061 DEBUG chrX:99315251-106221251: Successfully fit background model for 6,196,856 bp. Use segment r for 0 bp 2025-01-31 10:03:07,065 DEBUG chr3:100358251-109552751: Successfully fit background model for 8,701,189 bp. Use segment r for 0 bp 2025-01-31 10:03:07,086 DEBUG chr1:104432251-107009251: Successfully fit background model for 2,390,861 bp. Use segment r for 0 bp 2025-01-31 10:03:07,176 DEBUG chr5:108759751-110228501: Successfully fit background model for 1,197,474 bp. Use segment r for 0 bp 2025-01-31 10:03:07,208 DEBUG chr2:116556251-118636751: Successfully fit background model for 1,990,448 bp. Use segment r for 0 bp 2025-01-31 10:03:07,250 DEBUG chr4:115817751-119179251: Successfully fit background model for 3,208,539 bp. Use segment r for 0 bp 2025-01-31 10:03:07,264 DEBUG chr5:110228501-111096251: Successfully fit background model for 843,604 bp. Use segment r for 0 bp 2025-01-31 10:03:07,275 DEBUG chr2:118636751-119301751: Successfully fit background model for 651,018 bp. Use segment r for 0 bp 2025-01-31 10:03:07,520 DEBUG chr5:111096251-113721751: Successfully fit background model for 2,562,043 bp. Use segment r for 0 bp 2025-01-31 10:03:07,576 DEBUG chr3:109552751-115149751: Successfully fit background model for 4,738,715 bp. Use segment r for 0 bp 2025-01-31 10:03:07,605 DEBUG chr2:119301751-122867251: Successfully fit background model for 3,387,872 bp. Use segment r for 0 bp 2025-01-31 10:03:07,684 DEBUG chr5:113721751-115504251: Successfully fit background model for 1,733,729 bp. Use segment r for 0 bp 2025-01-31 10:03:07,735 DEBUG chr2:122867251-124284751: Successfully fit background model for 1,277,304 bp. Use segment r for 0 bp 2025-01-31 10:03:07,769 DEBUG chrX:106221251-114138251: Successfully fit background model for 6,623,684 bp. Use segment r for 0 bp 2025-01-31 10:03:07,770 DEBUG chr3:115149751-117312751: Successfully fit background model for 2,009,249 bp. Use segment r for 0 bp 2025-01-31 10:03:07,975 DEBUG chr5:115504251-118412251: Successfully fit background model for 2,838,144 bp. Use segment r for 0 bp 2025-01-31 10:03:08,007 DEBUG chr2:124284751-127115751: Successfully fit background model for 2,665,450 bp. Use segment r for 0 bp 2025-01-31 10:03:08,062 DEBUG chr3:117312751-120516251: Successfully fit background model for 2,996,018 bp. Use segment r for 0 bp 2025-01-31 10:03:08,136 DEBUG chr5:118412251-120087251: Successfully fit background model for 1,649,031 bp. Use segment r for 0 bp 2025-01-31 10:03:08,288 DEBUG chr1:107009251-118300751: Successfully fit background model for 9,833,839 bp. Use segment r for 0 bp 2025-01-31 10:03:08,416 DEBUG chr3:120516251-124300751: Successfully fit background model for 3,545,122 bp. Use segment r for 0 bp 2025-01-31 10:03:08,458 DEBUG chr1:118300751-120006001: Successfully fit background model for 1,656,340 bp. Use segment r for 0 bp 2025-01-31 10:03:08,481 DEBUG chr2:127115751-132245751: Successfully fit background model for 4,923,822 bp. Use segment r for 0 bp 2025-01-31 10:03:08,529 DEBUG chr3:124300751-125484251: Successfully fit background model for 1,092,946 bp. Use segment r for 0 bp 2025-01-31 10:03:08,649 DEBUG chr1:120006001-122168751: Successfully fit background model for 2,024,867 bp. Use segment r for 0 bp 2025-01-31 10:03:08,694 DEBUG chr5:120087251-125477251: Successfully fit background model for 5,164,024 bp. Use segment r for 0 bp 2025-01-31 10:03:08,854 DEBUG chr1:122168751-124382001: Successfully fit background model for 2,042,380 bp. Use segment r for 0 bp 2025-01-31 10:03:08,914 DEBUG chr2:132245751-137185251: Successfully fit background model for 4,629,032 bp. Use segment r for 0 bp 2025-01-31 10:03:09,042 DEBUG chr5:125477251-128998751: Successfully fit background model for 3,362,006 bp. Use segment r for 0 bp 2025-01-31 10:03:09,102 DEBUG chr2:137185251-139257751: Successfully fit background model for 1,905,004 bp. Use segment r for 0 bp 2025-01-31 10:03:09,160 DEBUG chr5:128998751-130133751: Successfully fit background model for 1,048,034 bp. Use segment r for 0 bp 2025-01-31 10:03:09,171 DEBUG chr3:125484251-132275251: Successfully fit background model for 6,327,784 bp. Use segment r for 0 bp 2025-01-31 10:03:09,257 DEBUG chrX:114138251-124247501: Successfully fit background model for 7,836,773 bp. Use segment r for 14,772 bp 2025-01-31 10:03:09,320 DEBUG chr5:130133751-131879251: Successfully fit background model for 1,702,357 bp. Use segment r for 0 bp 2025-01-31 10:03:09,331 DEBUG chr4:119179251-131782251: Successfully fit background model for 11,266,165 bp. Use segment r for 65 bp 2025-01-31 10:03:09,435 DEBUG chr3:132275251-135279751: Successfully fit background model for 2,694,858 bp. Use segment r for 0 bp 2025-01-31 10:03:09,441 DEBUG chr1:124382001-130713251: Successfully fit background model for 5,887,723 bp. Use segment r for 0 bp 2025-01-31 10:03:09,513 DEBUG chr3:135279751-136039251: Successfully fit background model for 719,161 bp. Use segment r for 0 bp 2025-01-31 10:03:09,536 DEBUG chr5:131879251-134172251: Successfully fit background model for 2,171,047 bp. Use segment r for 0 bp 2025-01-31 10:03:09,548 DEBUG chr2:139257751-143862751: Successfully fit background model for 4,272,832 bp. Use segment r for 0 bp 2025-01-31 10:03:09,649 DEBUG chr2:143862751-144794751: Successfully fit background model for 897,329 bp. Use segment r for 0 bp 2025-01-31 10:03:09,733 DEBUG chr4:131782251-136205751: Successfully fit background model for 4,305,688 bp. Use segment r for 0 bp 2025-01-31 10:03:09,818 DEBUG chr3:136039251-139229251: Successfully fit background model for 3,001,407 bp. Use segment r for 0 bp 2025-01-31 10:03:09,945 DEBUG chr1:130713251-136413751: Successfully fit background model for 5,546,166 bp. Use segment r for 0 bp 2025-01-31 10:03:10,046 DEBUG chr3:139229251-141826751: Successfully fit background model for 2,352,874 bp. Use segment r for 0 bp 2025-01-31 10:03:10,129 DEBUG chr4:136205751-140662251: Successfully fit background model for 4,369,507 bp. Use segment r for 0 bp 2025-01-31 10:03:10,227 DEBUG chr2:144794751-150902751: Successfully fit background model for 5,613,352 bp. Use segment r for 0 bp 2025-01-31 10:03:10,228 DEBUG chr1:136413751-139547751: Successfully fit background model for 2,931,387 bp. Use segment r for 0 bp 2025-01-31 10:03:10,235 DEBUG chr4:140662251-141719751: Successfully fit background model for 1,029,777 bp. Use segment r for 0 bp 2025-01-31 10:03:10,387 DEBUG chr3:141826751-145543751: Successfully fit background model for 3,525,807 bp. Use segment r for 0 bp 2025-01-31 10:03:10,390 DEBUG chrX:126004000-134013751: Successfully fit background model for 6,891,884 bp. Use segment r for 6,327 bp 2025-01-31 10:03:10,458 DEBUG chrX:134013751-134602251: Successfully fit background model for 565,752 bp. Use segment r for 0 bp 2025-01-31 10:03:10,508 DEBUG chr3:145543751-146843251: Successfully fit background model for 1,241,931 bp. Use segment r for 0 bp 2025-01-31 10:03:10,607 DEBUG chr1:139547751-143697251: Successfully fit background model for 3,531,102 bp. Use segment r for 0 bp 2025-01-31 10:03:10,701 DEBUG chr1:143697251-144534251: Successfully fit background model for 731,840 bp. Use segment r for 0 bp 2025-01-31 10:03:10,771 DEBUG chr5:134172251-145232751: Successfully fit background model for 10,468,644 bp. Use segment r for 0 bp 2025-01-31 10:03:10,860 DEBUG chr4:141719751-147847751: Successfully fit background model for 3,898,450 bp. Use segment r for 0 bp 2025-01-31 10:03:10,918 DEBUG chr5:145232751-146670751: Successfully fit background model for 1,132,296 bp. Use segment r for 0 bp 2025-01-31 10:03:10,964 DEBUG chr3:146843251-151659001: Successfully fit background model for 4,554,731 bp. Use segment r for 0 bp 2025-01-31 10:03:10,981 DEBUG chr2:150902751-159155751: Successfully fit background model for 7,674,682 bp. Use segment r for 0 bp 2025-01-31 10:03:11,124 DEBUG chr2:159155751-160575251: Successfully fit background model for 1,345,149 bp. Use segment r for 0 bp 2025-01-31 10:03:11,242 DEBUG chr3:151659001-154821251: Successfully fit background model for 2,994,312 bp. Use segment r for 0 bp 2025-01-31 10:03:11,278 DEBUG chr1:144534251-150387251: Successfully fit background model for 5,143,798 bp. Use segment r for 0 bp 2025-01-31 10:03:11,361 DEBUG chr2:160575251-163252751: Successfully fit background model for 2,552,486 bp. Use segment r for 0 bp 2025-01-31 10:03:11,474 DEBUG chr5:146670751-151834684: Successfully fit background model for 4,834,550 bp. Use segment r for 0 bp 2025-01-31 10:03:11,545 DEBUG chr3:154821251-157146251: Successfully fit background model for 2,138,682 bp. Use segment r for 9,976 bp 2025-01-31 10:03:11,645 DEBUG chr3:157146251-158175751: Successfully fit background model for 950,913 bp. Use segment r for 0 bp 2025-01-31 10:03:11,726 DEBUG chr4:147847751-156508116: Successfully fit background model for 8,241,610 bp. Use segment r for 0 bp 2025-01-31 10:03:11,811 DEBUG chr3:158175751-160039680: Successfully fit background model for 1,498,396 bp. Use segment r for 0 bp 2025-01-31 10:03:11,833 DEBUG chr2:163252751-168039251: Successfully fit background model for 4,613,305 bp. Use segment r for 0 bp 2025-01-31 10:03:12,780 DEBUG chr2:168039251-175179501: Successfully fit background model for 6,796,774 bp. Use segment r for 512 bp 2025-01-31 10:03:13,191 DEBUG chr2:176700000-179803751: Successfully fit background model for 1,913,854 bp. Use segment r for 395 bp 2025-01-31 10:03:13,381 DEBUG chrX:134602251-150431751: Successfully fit background model for 11,815,586 bp. Use segment r for 9,458 bp 2025-01-31 10:03:13,409 DEBUG chr2:179803751-182113224: Successfully fit background model for 2,118,640 bp. Use segment r for 0 bp 2025-01-31 10:03:13,574 DEBUG chrX:150431751-152143751: Successfully fit background model for 1,523,484 bp. Use segment r for 0 bp 2025-01-31 10:03:13,819 DEBUG chr1:150387251-171025751: Successfully fit background model for 19,437,273 bp. Use segment r for 0 bp 2025-01-31 10:03:13,898 DEBUG chr1:171025751-171411001: Successfully fit background model for 358,318 bp. Use segment r for 0 bp 2025-01-31 10:03:14,090 DEBUG chr1:171411001-172895251: Successfully fit background model for 1,379,535 bp. Use segment r for 0 bp 2025-01-31 10:03:14,443 DEBUG chrX:152143751-159253251: Successfully fit background model for 6,080,125 bp. Use segment r for 0 bp 2025-01-31 10:03:14,531 DEBUG chr1:172895251-176809751: Successfully fit background model for 3,535,888 bp. Use segment r for 0 bp 2025-01-31 10:03:14,688 DEBUG chr1:176809751-178303251: Successfully fit background model for 1,326,052 bp. Use segment r for 0 bp 2025-01-31 10:03:14,726 DEBUG chr1:178303251-178399751: Successfully fit background model for 94,097 bp. Use segment r for 0 bp 2025-01-31 10:03:14,830 DEBUG chr1:178399751-179516251: Successfully fit background model for 1,089,906 bp. Use segment r for 0 bp 2025-01-31 10:03:14,923 DEBUG chrX:159253251-164416751: Successfully fit background model for 4,754,957 bp. Use segment r for 0 bp 2025-01-31 10:03:15,004 DEBUG chr1:179516251-181255251: Successfully fit background model for 1,667,504 bp. Use segment r for 0 bp 2025-01-31 10:03:15,480 DEBUG chr1:181255251-185405251: Successfully fit background model for 3,865,065 bp. Use segment r for 0 bp 2025-01-31 10:03:15,568 DEBUG chrX:164416751-169971501: Successfully fit background model for 5,055,902 bp. Use segment r for 0 bp 2025-01-31 10:03:15,679 DEBUG chrX:169971501-171031299: Successfully fit background model for 14,549 bp. Use segment r for 0 bp 2025-01-31 10:03:15,988 DEBUG chr1:185405251-190756501: Successfully fit background model for 5,153,399 bp. Use segment r for 0 bp 2025-01-31 10:03:16,114 DEBUG chr1:190756501-191938251: Successfully fit background model for 1,141,683 bp. Use segment r for 0 bp 2025-01-31 10:03:16,484 DEBUG chr1:191938251-195471971: Successfully fit background model for 3,177,391 bp. Use segment r for 0 bp 2025-01-31 10:04:43,260 DEBUG chr6:3050000-9042251: Successfully fit background model for 5,322,844 bp. Use segment r for 0 bp 2025-01-31 10:04:43,440 DEBUG chr6:9042251-10947751: Successfully fit background model for 1,628,853 bp. Use segment r for 0 bp 2025-01-31 10:04:44,224 DEBUG chr7:3004000-3593751: Successfully fit background model for 443,045 bp. Use segment r for 0 bp 2025-01-31 10:04:44,383 DEBUG chr7:3593751-5128751: Successfully fit background model for 1,232,232 bp. Use segment r for 0 bp 2025-01-31 10:04:44,443 DEBUG chr7:5128751-5707251: Successfully fit background model for 418,947 bp. Use segment r for 0 bp 2025-01-31 10:04:44,693 DEBUG chr7:5707251-7300751: Successfully fit background model for 1,338,020 bp. Use segment r for 472 bp 2025-01-31 10:04:45,690 DEBUG chr7:7300751-12897251: Successfully fit background model for 2,136,585 bp. Use segment r for 31,422 bp 2025-01-31 10:04:45,719 DEBUG chr7:12897251-13064251: Successfully fit background model for 159,548 bp. Use segment r for 0 bp 2025-01-31 10:04:45,868 DEBUG chr6:10947751-28397751: Successfully fit background model for 15,527,043 bp. Use segment r for 0 bp 2025-01-31 10:04:46,001 DEBUG chr7:13064251-15902251: Successfully fit background model for 1,752,585 bp. Use segment r for 0 bp 2025-01-31 10:04:46,112 DEBUG chr7:15902251-17067751: Successfully fit background model for 1,131,769 bp. Use segment r for 0 bp 2025-01-31 10:04:46,369 DEBUG chr7:17067751-19002251: Successfully fit background model for 1,389,608 bp. Use segment r for 8,557 bp 2025-01-31 10:04:46,451 DEBUG chr7:19002251-19814251: Successfully fit background model for 795,346 bp. Use segment r for 0 bp 2025-01-31 10:04:46,487 DEBUG chr7:19814251-20090001: Successfully fit background model for 227,719 bp. Use segment r for 0 bp 2025-01-31 10:04:46,573 DEBUG chr6:28397751-35948251: Successfully fit background model for 7,152,966 bp. Use segment r for 0 bp 2025-01-31 10:04:46,708 DEBUG chr7:22778500-24250501: Successfully fit background model for 793,035 bp. Use segment r for 7,391 bp 2025-01-31 10:04:46,751 DEBUG chr6:35948251-37843751: Successfully fit background model for 1,777,757 bp. Use segment r for 0 bp 2025-01-31 10:04:46,863 DEBUG chr7:24250501-25932751: Successfully fit background model for 1,581,599 bp. Use segment r for 0 bp 2025-01-31 10:04:46,911 DEBUG chr6:37843751-39377251: Successfully fit background model for 1,492,377 bp. Use segment r for 0 bp 2025-01-31 10:04:46,977 DEBUG chr7:25932751-27130251: Successfully fit background model for 933,065 bp. Use segment r for 0 bp 2025-01-31 10:04:47,437 DEBUG chr7:27130251-30977751: Successfully fit background model for 3,616,047 bp. Use segment r for 0 bp 2025-01-31 10:04:47,438 DEBUG chr6:39377251-43938751: Successfully fit background model for 4,093,915 bp. Use segment r for 0 bp 2025-01-31 10:04:47,694 DEBUG chr6:43938751-46593251: Successfully fit background model for 2,381,792 bp. Use segment r for 0 bp 2025-01-31 10:04:47,803 DEBUG chr6:46593251-47579251: Successfully fit background model for 890,627 bp. Use segment r for 0 bp 2025-01-31 10:04:47,831 DEBUG chr7:30977751-33780751: Successfully fit background model for 1,183,832 bp. Use segment r for 33,665 bp 2025-01-31 10:04:47,856 DEBUG chr6:47579251-47930751: Successfully fit background model for 211,535 bp. Use segment r for 0 bp 2025-01-31 10:04:48,067 DEBUG chr7:33780751-35817751: Successfully fit background model for 1,924,288 bp. Use segment r for 0 bp 2025-01-31 10:04:48,274 DEBUG chr7:35817751-38066251: Successfully fit background model for 2,199,564 bp. Use segment r for 0 bp 2025-01-31 10:04:48,304 DEBUG chr7:38066251-38286251: Successfully fit background model for 214,751 bp. Use segment r for 0 bp 2025-01-31 10:04:48,605 DEBUG chr6:47930751-54587251: Successfully fit background model for 6,364,597 bp. Use segment r for 0 bp 2025-01-31 10:04:48,650 DEBUG chr6:54587251-54916251: Successfully fit background model for 322,387 bp. Use segment r for 0 bp 2025-01-31 10:04:49,104 DEBUG chr6:54916251-59487751: Successfully fit background model for 4,099,663 bp. Use segment r for 0 bp 2025-01-31 10:04:49,172 DEBUG chr7:38286251-43880251: Successfully fit background model for 4,063,055 bp. Use segment r for 4,034 bp 2025-01-31 10:04:49,237 DEBUG chr7:43880251-44460751: Successfully fit background model for 529,298 bp. Use segment r for 0 bp 2025-01-31 10:04:49,363 DEBUG chr7:44460751-45675251: Successfully fit background model for 1,191,341 bp. Use segment r for 0 bp 2025-01-31 10:04:49,503 DEBUG chr7:45675251-47174251: Successfully fit background model for 1,468,955 bp. Use segment r for 0 bp 2025-01-31 10:04:49,618 DEBUG chr7:47174251-48437751: Successfully fit background model for 1,000,384 bp. Use segment r for 0 bp 2025-01-31 10:04:49,753 DEBUG chr7:48437751-49922251: Successfully fit background model for 1,410,460 bp. Use segment r for 0 bp 2025-01-31 10:04:49,833 DEBUG chr6:59487751-66960251: Successfully fit background model for 6,625,921 bp. Use segment r for 0 bp 2025-01-31 10:04:49,931 DEBUG chr6:66960251-67899251: Successfully fit background model for 828,824 bp. Use segment r for 0 bp 2025-01-31 10:04:49,980 DEBUG chr7:49922251-51575751: Successfully fit background model for 1,418,103 bp. Use segment r for 1,000 bp 2025-01-31 10:04:50,031 DEBUG chr7:51575751-52069251: Successfully fit background model for 466,209 bp. Use segment r for 0 bp 2025-01-31 10:04:50,177 DEBUG chr6:67899251-70709501: Successfully fit background model for 2,202,179 bp. Use segment r for 0 bp 2025-01-31 10:04:50,398 DEBUG chr6:70709501-73204001: Successfully fit background model for 2,412,902 bp. Use segment r for 0 bp 2025-01-31 10:04:50,490 DEBUG chr6:73204001-74208251: Successfully fit background model for 883,594 bp. Use segment r for 0 bp 2025-01-31 10:04:50,528 DEBUG chr7:52069251-55397251: Successfully fit background model for 2,928,536 bp. Use segment r for 1,413 bp 2025-01-31 10:04:50,649 DEBUG chr7:55397251-56663001: Successfully fit background model for 1,103,956 bp. Use segment r for 0 bp 2025-01-31 10:04:51,025 DEBUG chr6:74208251-79624751: Successfully fit background model for 4,878,433 bp. Use segment r for 0 bp 2025-01-31 10:04:51,062 DEBUG chr10:3101500-3940251: Successfully fit background model for 753,487 bp. Use segment r for 0 bp 2025-01-31 10:04:51,245 DEBUG chr10:3940251-5845251: Successfully fit background model for 1,764,686 bp. Use segment r for 0 bp 2025-01-31 10:04:51,293 DEBUG chr6:79624751-82652251: Successfully fit background model for 2,731,657 bp. Use segment r for 0 bp 2025-01-31 10:04:51,385 DEBUG chr6:82652251-83562751: Successfully fit background model for 891,061 bp. Use segment r for 0 bp 2025-01-31 10:04:51,405 DEBUG chr10:5845251-7598751: Successfully fit background model for 1,459,459 bp. Use segment r for 0 bp 2025-01-31 10:04:51,535 DEBUG chr7:56663001-63214751: Successfully fit background model for 5,383,275 bp. Use segment r for 3,682 bp 2025-01-31 10:04:51,547 DEBUG chr6:83562751-85329751: Successfully fit background model for 1,692,996 bp. Use segment r for 0 bp 2025-01-31 10:04:52,046 DEBUG chr7:63214751-68995251: Successfully fit background model for 5,457,738 bp. Use segment r for 0 bp 2025-01-31 10:04:52,111 DEBUG chr10:7598751-14732751: Successfully fit background model for 6,603,338 bp. Use segment r for 0 bp 2025-01-31 10:04:52,165 DEBUG chr6:85329751-91891501: Successfully fit background model for 6,162,294 bp. Use segment r for 0 bp 2025-01-31 10:04:52,297 DEBUG chr10:14732751-16769751: Successfully fit background model for 1,783,673 bp. Use segment r for 0 bp 2025-01-31 10:04:52,429 DEBUG chr7:68995251-73516251: Successfully fit background model for 4,219,628 bp. Use segment r for 0 bp 2025-01-31 10:04:52,452 DEBUG chr7:73516251-73629251: Successfully fit background model for 110,977 bp. Use segment r for 0 bp 2025-01-31 10:04:52,711 DEBUG chr7:73629251-76271751: Successfully fit background model for 2,411,939 bp. Use segment r for 0 bp 2025-01-31 10:04:52,885 DEBUG chr7:76271751-78186751: Successfully fit background model for 1,769,663 bp. Use segment r for 0 bp 2025-01-31 10:04:53,029 DEBUG chr7:78186751-79225751: Successfully fit background model for 1,003,403 bp. Use segment r for 4,462 bp 2025-01-31 10:04:53,173 DEBUG chr7:79225751-80888751: Successfully fit background model for 1,622,220 bp. Use segment r for 0 bp 2025-01-31 10:04:53,481 DEBUG chr6:91891501-103394751: Successfully fit background model for 10,874,239 bp. Use segment r for 0 bp 2025-01-31 10:04:53,594 DEBUG chr10:16769751-28490251: Successfully fit background model for 10,768,676 bp. Use segment r for 0 bp 2025-01-31 10:04:53,640 DEBUG chr7:80888751-84886751: Successfully fit background model for 3,765,284 bp. Use segment r for 0 bp 2025-01-31 10:04:53,665 DEBUG chr6:103394751-105350751: Successfully fit background model for 1,769,814 bp. Use segment r for 0 bp 2025-01-31 10:04:54,119 DEBUG chr7:84886751-88587751: Successfully fit background model for 3,292,332 bp. Use segment r for 80 bp 2025-01-31 10:04:54,296 DEBUG chr7:88587751-90490251: Successfully fit background model for 1,731,195 bp. Use segment r for 0 bp 2025-01-31 10:04:54,365 DEBUG chr6:105350751-112852251: Successfully fit background model for 6,798,564 bp. Use segment r for 0 bp 2025-01-31 10:04:54,449 DEBUG chr6:112852251-113664251: Successfully fit background model for 795,928 bp. Use segment r for 0 bp 2025-01-31 10:04:54,471 DEBUG chr7:90490251-92174251: Successfully fit background model for 1,573,890 bp. Use segment r for 0 bp 2025-01-31 10:04:54,555 DEBUG chr7:92174251-93042251: Successfully fit background model for 795,124 bp. Use segment r for 0 bp 2025-01-31 10:04:54,617 DEBUG chr10:28490251-38488751: Successfully fit background model for 9,012,850 bp. Use segment r for 0 bp 2025-01-31 10:04:54,771 DEBUG chr10:38488751-40106251: Successfully fit background model for 1,493,727 bp. Use segment r for 0 bp 2025-01-31 10:04:54,899 DEBUG chr7:93042251-95616251: Successfully fit background model for 2,279,141 bp. Use segment r for 2,469 bp 2025-01-31 10:04:55,076 DEBUG chr10:40106251-43574251: Successfully fit background model for 3,329,060 bp. Use segment r for 0 bp 2025-01-31 10:04:55,112 DEBUG chr7:95616251-98055251: Successfully fit background model for 2,313,924 bp. Use segment r for 0 bp 2025-01-31 10:04:55,387 DEBUG chr10:43574251-46892251: Successfully fit background model for 3,083,089 bp. Use segment r for 0 bp 2025-01-31 10:04:55,588 DEBUG chr7:98055251-102856751: Successfully fit background model for 4,646,755 bp. Use segment r for 0 bp 2025-01-31 10:04:55,693 DEBUG chr10:46892251-50129251: Successfully fit background model for 2,824,395 bp. Use segment r for 0 bp 2025-01-31 10:04:55,703 DEBUG chr6:113664251-124662251: Successfully fit background model for 9,833,881 bp. Use segment r for 0 bp 2025-01-31 10:04:55,774 DEBUG chr6:124662251-125195751: Successfully fit background model for 512,044 bp. Use segment r for 0 bp 2025-01-31 10:04:56,226 DEBUG chr6:125195751-129584251: Successfully fit background model for 4,168,646 bp. Use segment r for 0 bp 2025-01-31 10:04:56,550 DEBUG chr10:50129251-58220751: Successfully fit background model for 6,902,319 bp. Use segment r for 0 bp 2025-01-31 10:04:56,556 DEBUG chr7:102856751-109088751: Successfully fit background model for 4,969,602 bp. Use segment r for 5,992 bp 2025-01-31 10:04:56,566 DEBUG chr6:129584251-133520751: Successfully fit background model for 3,164,864 bp. Use segment r for 0 bp 2025-01-31 10:04:56,667 DEBUG chr6:133520751-134606751: Successfully fit background model for 976,370 bp. Use segment r for 0 bp 2025-01-31 10:04:56,701 DEBUG chr10:58220751-59764751: Successfully fit background model for 1,454,111 bp. Use segment r for 0 bp 2025-01-31 10:04:56,725 DEBUG chr6:134606751-135132751: Successfully fit background model for 511,145 bp. Use segment r for 0 bp 2025-01-31 10:04:56,727 DEBUG chr7:109088751-110979751: Successfully fit background model for 1,831,429 bp. Use segment r for 0 bp 2025-01-31 10:04:57,017 DEBUG chr6:135132751-138298751: Successfully fit background model for 3,027,678 bp. Use segment r for 0 bp 2025-01-31 10:04:57,052 DEBUG chr10:59764751-63479751: Successfully fit background model for 3,605,000 bp. Use segment r for 0 bp 2025-01-31 10:04:57,119 DEBUG chr10:63479751-64131251: Successfully fit background model for 590,169 bp. Use segment r for 0 bp 2025-01-31 10:04:57,335 DEBUG chr6:138298751-141880251: Successfully fit background model for 3,315,362 bp. Use segment r for 0 bp 2025-01-31 10:04:57,412 DEBUG chr10:64131251-66263751: Successfully fit background model for 1,878,525 bp. Use segment r for 59,693 bp 2025-01-31 10:04:58,081 DEBUG chr6:141880251-149736546: Successfully fit background model for 7,227,270 bp. Use segment r for 0 bp 2025-01-31 10:04:58,252 DEBUG chr7:110979751-125389751: Successfully fit background model for 13,738,960 bp. Use segment r for 0 bp 2025-01-31 10:04:58,452 DEBUG chr10:66263751-75548751: Successfully fit background model for 8,634,995 bp. Use segment r for 0 bp 2025-01-31 10:04:58,551 DEBUG chr7:125389751-128514251: Successfully fit background model for 3,018,249 bp. Use segment r for 0 bp 2025-01-31 10:04:58,746 DEBUG chr7:128514251-130621251: Successfully fit background model for 1,999,098 bp. Use segment r for 0 bp 2025-01-31 10:04:58,860 DEBUG chr10:75548751-79645251: Successfully fit background model for 3,803,191 bp. Use segment r for 0 bp 2025-01-31 10:04:59,023 DEBUG chr7:130621251-133669251: Successfully fit background model for 2,944,251 bp. Use segment r for 0 bp 2025-01-31 10:04:59,052 DEBUG chr10:79645251-81653751: Successfully fit background model for 1,973,776 bp. Use segment r for 0 bp 2025-01-31 10:04:59,748 DEBUG chr7:133669251-140821251: Successfully fit background model for 6,805,565 bp. Use segment r for 0 bp 2025-01-31 10:04:59,858 DEBUG chr7:140821251-141859751: Successfully fit background model for 973,257 bp. Use segment r for 0 bp 2025-01-31 10:05:00,164 DEBUG chr10:81653751-91071251: Successfully fit background model for 8,446,440 bp. Use segment r for 0 bp 2025-01-31 10:05:00,195 DEBUG chr10:91071251-91190251: Successfully fit background model for 116,132 bp. Use segment r for 0 bp 2025-01-31 10:05:00,207 DEBUG chr7:141859751-145441459: Successfully fit background model for 3,359,788 bp. Use segment r for 0 bp 2025-01-31 10:05:00,368 DEBUG chr10:91190251-93041751: Successfully fit background model for 1,766,196 bp. Use segment r for 0 bp 2025-01-31 10:05:00,864 DEBUG chr10:93041751-97451751: Successfully fit background model for 4,244,915 bp. Use segment r for 0 bp 2025-01-31 10:05:00,924 DEBUG chr10:97451751-97991751: Successfully fit background model for 492,419 bp. Use segment r for 0 bp 2025-01-31 10:05:00,941 DEBUG chr8:3070000-4780251: Successfully fit background model for 1,497,966 bp. Use segment r for 0 bp 2025-01-31 10:05:01,072 DEBUG chr10:97991751-99670751: Successfully fit background model for 1,558,784 bp. Use segment r for 0 bp 2025-01-31 10:05:01,190 DEBUG chr8:4780251-7267751: Successfully fit background model for 2,187,537 bp. Use segment r for 0 bp 2025-01-31 10:05:01,390 DEBUG chr8:7267751-9517251: Successfully fit background model for 2,106,636 bp. Use segment r for 0 bp 2025-01-31 10:05:01,991 DEBUG chr8:9517251-15416251: Successfully fit background model for 5,689,917 bp. Use segment r for 0 bp 2025-01-31 10:05:02,331 DEBUG chr8:15416251-17923251: Successfully fit background model for 2,267,539 bp. Use segment r for 7,367 bp 2025-01-31 10:05:02,416 DEBUG chr10:99670751-107597251: Successfully fit background model for 7,092,069 bp. Use segment r for 270 bp 2025-01-31 10:05:03,036 DEBUG chr10:107597251-113985001: Successfully fit background model for 5,962,240 bp. Use segment r for 0 bp 2025-01-31 10:05:03,315 DEBUG chr10:113985001-117023751: Successfully fit background model for 2,878,373 bp. Use segment r for 0 bp 2025-01-31 10:05:03,389 DEBUG chr10:117023751-117758251: Successfully fit background model for 701,112 bp. Use segment r for 0 bp 2025-01-31 10:05:03,653 DEBUG chr8:17923251-25550751: Successfully fit background model for 5,547,063 bp. Use segment r for 43,533 bp 2025-01-31 10:05:03,854 DEBUG chr8:25550751-27637251: Successfully fit background model for 1,968,068 bp. Use segment r for 0 bp 2025-01-31 10:05:03,962 DEBUG chr10:117758251-123932751: Successfully fit background model for 5,748,512 bp. Use segment r for 0 bp 2025-01-31 10:05:04,173 DEBUG chr8:27637251-30552251: Successfully fit background model for 2,576,065 bp. Use segment r for 0 bp 2025-01-31 10:05:04,243 DEBUG chr10:123932751-126889251: Successfully fit background model for 2,751,766 bp. Use segment r for 0 bp 2025-01-31 10:05:04,434 DEBUG chr10:126889251-128766751: Successfully fit background model for 1,823,473 bp. Use segment r for 0 bp 2025-01-31 10:05:04,444 DEBUG chr8:30552251-33593751: Successfully fit background model for 2,811,487 bp. Use segment r for 0 bp 2025-01-31 10:05:04,488 DEBUG chr10:128766751-129288001: Successfully fit background model for 439,548 bp. Use segment r for 0 bp 2025-01-31 10:05:04,641 DEBUG chr10:129288001-130694993: Successfully fit background model for 1,097,171 bp. Use segment r for 0 bp 2025-01-31 10:05:04,818 DEBUG chr8:33593751-37403751: Successfully fit background model for 3,616,792 bp. Use segment r for 0 bp 2025-01-31 10:05:05,044 DEBUG chr8:37403751-39946001: Successfully fit background model for 2,254,676 bp. Use segment r for 0 bp 2025-01-31 10:05:05,195 DEBUG chr8:39946001-41564751: Successfully fit background model for 1,439,496 bp. Use segment r for 0 bp 2025-01-31 10:05:05,363 DEBUG chr14:3006500-5127001: Successfully fit background model for 68,404 bp. Use segment r for 6,367 bp 2025-01-31 10:05:05,459 DEBUG chr8:41564751-43534251: Successfully fit background model for 1,749,809 bp. Use segment r for 531 bp 2025-01-31 10:05:05,904 DEBUG chr8:43534251-47639751: Successfully fit background model for 3,784,988 bp. Use segment r for 0 bp 2025-01-31 10:05:05,923 DEBUG chr8:47639751-47723751: Successfully fit background model for 82,605 bp. Use segment r for 0 bp 2025-01-31 10:05:06,199 DEBUG chr8:47723751-50195751: Successfully fit background model for 2,353,052 bp. Use segment r for 0 bp 2025-01-31 10:05:06,476 DEBUG chr8:50195751-53180251: Successfully fit background model for 2,682,807 bp. Use segment r for 0 bp 2025-01-31 10:05:06,886 DEBUG chr8:53180251-57444751: Successfully fit background model for 3,533,485 bp. Use segment r for 0 bp 2025-01-31 10:05:06,906 DEBUG chr8:57444751-57534251: Successfully fit background model for 87,551 bp. Use segment r for 0 bp 2025-01-31 10:05:07,280 DEBUG chr8:57534251-60942251: Successfully fit background model for 2,993,517 bp. Use segment r for 0 bp 2025-01-31 10:05:07,295 DEBUG chr8:60942251-60996751: Successfully fit background model for 53,651 bp. Use segment r for 0 bp 2025-01-31 10:05:07,849 DEBUG chr8:60996751-66110251: Successfully fit background model for 4,599,045 bp. Use segment r for 0 bp 2025-01-31 10:05:08,349 DEBUG chr8:66110251-69749251: Successfully fit background model for 3,207,987 bp. Use segment r for 287 bp 2025-01-31 10:05:08,513 DEBUG chr8:69749251-71553751: Successfully fit background model for 1,649,499 bp. Use segment r for 0 bp 2025-01-31 10:05:08,566 DEBUG chr14:5843500-19699751: Successfully fit background model for 10,934,578 bp. Use segment r for 11,736 bp 2025-01-31 10:05:08,707 DEBUG chr8:71553751-73731251: Successfully fit background model for 1,873,136 bp. Use segment r for 0 bp 2025-01-31 10:05:08,775 DEBUG chr14:19699751-21873751: Successfully fit background model for 2,104,206 bp. Use segment r for 0 bp 2025-01-31 10:05:08,836 DEBUG chr8:73731251-74963751: Successfully fit background model for 1,063,697 bp. Use segment r for 0 bp 2025-01-31 10:05:08,870 DEBUG chr8:74963751-75278251: Successfully fit background model for 292,119 bp. Use segment r for 0 bp 2025-01-31 10:05:09,017 DEBUG chr8:75278251-76897251: Successfully fit background model for 1,435,829 bp. Use segment r for 0 bp 2025-01-31 10:05:09,543 DEBUG chr14:21873751-29861251: Successfully fit background model for 7,211,867 bp. Use segment r for 0 bp 2025-01-31 10:05:09,644 DEBUG chr8:76897251-83389251: Successfully fit background model for 6,052,754 bp. Use segment r for 0 bp 2025-01-31 10:05:09,769 DEBUG chr8:83389251-84631751: Successfully fit background model for 1,201,751 bp. Use segment r for 0 bp 2025-01-31 10:05:09,819 DEBUG chr8:84631751-85087251: Successfully fit background model for 448,395 bp. Use segment r for 0 bp 2025-01-31 10:05:10,031 DEBUG chr14:29861251-35101751: Successfully fit background model for 5,066,656 bp. Use segment r for 0 bp 2025-01-31 10:05:10,215 DEBUG chr14:35101751-37165501: Successfully fit background model for 1,883,293 bp. Use segment r for 0 bp 2025-01-31 10:05:10,527 DEBUG chr14:37165501-40556751: Successfully fit background model for 3,034,479 bp. Use segment r for 0 bp 2025-01-31 10:05:10,585 DEBUG chr14:40556751-41109751: Successfully fit background model for 492,038 bp. Use segment r for 0 bp 2025-01-31 10:05:10,808 DEBUG chr8:85087251-93883251: Successfully fit background model for 8,398,404 bp. Use segment r for 0 bp 2025-01-31 10:05:10,997 DEBUG chr8:93883251-95889751: Successfully fit background model for 1,938,268 bp. Use segment r for 0 bp 2025-01-31 10:05:11,107 DEBUG chr14:41109751-44863751: Successfully fit background model for 943,968 bp. Use segment r for 5,726 bp 2025-01-31 10:05:11,483 DEBUG chr14:44863751-49246751: Successfully fit background model for 4,158,668 bp. Use segment r for 0 bp 2025-01-31 10:05:11,619 DEBUG chr14:49246751-50771251: Successfully fit background model for 1,305,459 bp. Use segment r for 0 bp 2025-01-31 10:05:11,677 DEBUG chr14:50771251-51267751: Successfully fit background model for 456,989 bp. Use segment r for 0 bp 2025-01-31 10:05:11,741 DEBUG chr14:51267751-51983251: Successfully fit background model for 553,415 bp. Use segment r for 0 bp 2025-01-31 10:05:11,778 DEBUG chr14:51983251-52344251: Successfully fit background model for 351,767 bp. Use segment r for 0 bp 2025-01-31 10:05:11,817 DEBUG chr8:95889751-103023251: Successfully fit background model for 6,510,341 bp. Use segment r for 0 bp 2025-01-31 10:05:11,899 DEBUG chr14:52344251-53702501: Successfully fit background model for 620,777 bp. Use segment r for 0 bp 2025-01-31 10:05:11,960 DEBUG chr8:103023251-104532751: Successfully fit background model for 1,440,562 bp. Use segment r for 0 bp 2025-01-31 10:05:12,245 DEBUG chr8:104532751-107290751: Successfully fit background model for 2,579,359 bp. Use segment r for 0 bp 2025-01-31 10:05:12,369 DEBUG chr14:53702501-58184751: Successfully fit background model for 4,196,355 bp. Use segment r for 0 bp 2025-01-31 10:05:12,442 DEBUG chr14:58184751-58830501: Successfully fit background model for 600,971 bp. Use segment r for 0 bp 2025-01-31 10:05:12,547 DEBUG chr8:107290751-110644251: Successfully fit background model for 3,260,151 bp. Use segment r for 0 bp 2025-01-31 10:05:12,666 DEBUG chr8:110644251-111923251: Successfully fit background model for 1,243,624 bp. Use segment r for 0 bp 2025-01-31 10:05:13,220 DEBUG chr14:58830501-66414251: Successfully fit background model for 7,241,358 bp. Use segment r for 0 bp 2025-01-31 10:05:13,382 DEBUG chr8:111923251-116863251: Successfully fit background model for 4,472,859 bp. Use segment r for 285,855 bp 2025-01-31 10:05:13,424 DEBUG chr14:66414251-68695251: Successfully fit background model for 2,174,818 bp. Use segment r for 0 bp 2025-01-31 10:05:13,602 DEBUG chr8:116863251-119341751: Successfully fit background model for 2,406,146 bp. Use segment r for 0 bp 2025-01-31 10:05:13,673 DEBUG chr14:68695251-71255251: Successfully fit background model for 2,031,457 bp. Use segment r for 0 bp 2025-01-31 10:05:13,805 DEBUG chr14:71255251-72769751: Successfully fit background model for 1,397,479 bp. Use segment r for 0 bp 2025-01-31 10:05:13,843 DEBUG chr9:3002500-13296251: Successfully fit background model for 9,011,884 bp. Use segment r for 0 bp 2025-01-31 10:05:13,964 DEBUG chr14:72769751-74317751: Successfully fit background model for 1,400,672 bp. Use segment r for 0 bp 2025-01-31 10:05:14,021 DEBUG chr8:119341751-124122751: Successfully fit background model for 4,573,151 bp. Use segment r for 0 bp 2025-01-31 10:05:14,270 DEBUG chr8:124122751-126826751: Successfully fit background model for 2,618,759 bp. Use segment r for 0 bp 2025-01-31 10:05:14,426 DEBUG chr9:13296251-17389501: Successfully fit background model for 3,756,626 bp. Use segment r for 0 bp 2025-01-31 10:05:14,516 DEBUG chr8:126826751-129401213: Successfully fit background model for 2,281,981 bp. Use segment r for 0 bp 2025-01-31 10:05:14,671 DEBUG chr14:74317751-79994251: Successfully fit background model for 5,391,402 bp. Use segment r for 0 bp 2025-01-31 10:05:14,998 DEBUG chr9:17389501-20434251: Successfully fit background model for 2,586,719 bp. Use segment r for 2,645 bp 2025-01-31 10:05:15,200 DEBUG chr9:20434251-22370251: Successfully fit background model for 1,860,738 bp. Use segment r for 0 bp 2025-01-31 10:05:15,250 DEBUG chr14:79994251-86085251: Successfully fit background model for 5,449,987 bp. Use segment r for 0 bp 2025-01-31 10:05:15,394 DEBUG chr14:86085251-87578251: Successfully fit background model for 1,393,663 bp. Use segment r for 0 bp 2025-01-31 10:05:15,515 DEBUG chr9:22370251-25607751: Successfully fit background model for 2,976,917 bp. Use segment r for 0 bp 2025-01-31 10:05:16,080 DEBUG chr9:25607751-31073751: Successfully fit background model for 5,184,342 bp. Use segment r for 0 bp 2025-01-31 10:05:16,246 DEBUG chr9:31073751-32837251: Successfully fit background model for 1,705,868 bp. Use segment r for 0 bp 2025-01-31 10:05:16,374 DEBUG chr9:32837251-34078251: Successfully fit background model for 1,127,399 bp. Use segment r for 0 bp 2025-01-31 10:05:16,799 DEBUG chr9:34078251-37706251: Successfully fit background model for 3,321,108 bp. Use segment r for 0 bp 2025-01-31 10:05:17,083 DEBUG chr9:37706251-40768751: Successfully fit background model for 2,767,034 bp. Use segment r for 0 bp 2025-01-31 10:05:17,098 DEBUG chr9:40768751-40822251: Successfully fit background model for 50,020 bp. Use segment r for 0 bp 2025-01-31 10:05:17,374 DEBUG chr9:40822251-43101751: Successfully fit background model for 2,233,836 bp. Use segment r for 0 bp 2025-01-31 10:05:17,469 DEBUG chr9:43101751-44066251: Successfully fit background model for 952,553 bp. Use segment r for 0 bp 2025-01-31 10:05:17,534 DEBUG chr9:44066251-44704251: Successfully fit background model for 610,947 bp. Use segment r for 0 bp 2025-01-31 10:05:17,970 DEBUG chr14:87578251-98089751: Successfully fit background model for 9,535,780 bp. Use segment r for 4,289 bp 2025-01-31 10:05:18,473 DEBUG chr14:98089751-103051251: Successfully fit background model for 4,605,235 bp. Use segment r for 0 bp 2025-01-31 10:05:18,516 DEBUG chr14:103051251-103115751: Successfully fit background model for 59,644 bp. Use segment r for 0 bp 2025-01-31 10:05:19,005 DEBUG chr14:103115751-106059751: Successfully fit background model for 2,706,593 bp. Use segment r for 0 bp 2025-01-31 10:05:19,508 DEBUG chr9:44704251-56828751: Successfully fit background model for 11,583,057 bp. Use segment r for 0 bp 2025-01-31 10:05:19,781 DEBUG chr9:56828751-59752251: Successfully fit background model for 2,839,614 bp. Use segment r for 0 bp 2025-01-31 10:05:19,925 DEBUG chr9:59752251-61226251: Successfully fit background model for 1,433,167 bp. Use segment r for 0 bp 2025-01-31 10:05:20,436 DEBUG chr9:61226251-66583001: Successfully fit background model for 5,224,346 bp. Use segment r for 0 bp 2025-01-31 10:05:20,716 DEBUG chr14:106059751-116219751: Successfully fit background model for 9,145,106 bp. Use segment r for 0 bp 2025-01-31 10:05:20,796 DEBUG chr9:66583001-70656251: Successfully fit background model for 3,940,673 bp. Use segment r for 0 bp 2025-01-31 10:05:21,106 DEBUG chr9:70656251-73376251: Successfully fit background model for 2,577,607 bp. Use segment r for 0 bp 2025-01-31 10:05:21,206 DEBUG chr9:73376251-74395251: Successfully fit background model for 940,528 bp. Use segment r for 0 bp 2025-01-31 10:05:21,663 DEBUG chr14:116219751-121251751: Successfully fit background model for 4,697,452 bp. Use segment r for 0 bp 2025-01-31 10:05:21,836 DEBUG chr9:74395251-80823751: Successfully fit background model for 5,916,365 bp. Use segment r for 0 bp 2025-01-31 10:05:21,852 DEBUG chr14:121251751-121988251: Successfully fit background model for 723,833 bp. Use segment r for 0 bp 2025-01-31 10:05:22,416 DEBUG chr14:121988251-124902244: Successfully fit background model for 2,439,447 bp. Use segment r for 0 bp 2025-01-31 10:05:22,846 DEBUG chr9:80823751-90598751: Successfully fit background model for 8,489,145 bp. Use segment r for 0 bp 2025-01-31 10:05:23,384 DEBUG chr9:90598751-94530251: Successfully fit background model for 3,516,362 bp. Use segment r for 485 bp 2025-01-31 10:05:24,915 DEBUG chr9:94530251-106143751: Successfully fit background model for 11,093,725 bp. Use segment r for 0 bp 2025-01-31 10:05:25,006 DEBUG chr9:106143751-106926001: Successfully fit background model for 750,510 bp. Use segment r for 0 bp 2025-01-31 10:05:25,061 DEBUG chr9:106926001-107246251: Successfully fit background model for 278,500 bp. Use segment r for 0 bp 2025-01-31 10:05:25,186 DEBUG chr9:107246251-108642751: Successfully fit background model for 1,372,578 bp. Use segment r for 0 bp 2025-01-31 10:05:25,558 DEBUG chr9:108642751-112376251: Successfully fit background model for 3,397,113 bp. Use segment r for 0 bp 2025-01-31 10:05:25,711 DEBUG chr9:112376251-113897251: Successfully fit background model for 1,432,372 bp. Use segment r for 0 bp 2025-01-31 10:05:26,235 DEBUG chr9:113897251-119319751: Successfully fit background model for 5,115,450 bp. Use segment r for 0 bp 2025-01-31 10:05:26,725 DEBUG chr9:119319751-124595110: Successfully fit background model for 4,732,653 bp. Use segment r for 0 bp 2025-01-31 10:06:22,955 DEBUG chr11:3100500-3204251: Successfully fit background model for 76,714 bp. Use segment r for 0 bp 2025-01-31 10:06:23,310 DEBUG chr11:3204251-6715751: Successfully fit background model for 3,376,744 bp. Use segment r for 0 bp 2025-01-31 10:06:23,541 DEBUG chr11:6715751-9259251: Successfully fit background model for 2,299,020 bp. Use segment r for 0 bp 2025-01-31 10:06:23,735 DEBUG chr11:9259251-11121001: Successfully fit background model for 1,647,218 bp. Use segment r for 0 bp 2025-01-31 10:06:23,852 DEBUG chr11:11121001-12362251: Successfully fit background model for 1,130,307 bp. Use segment r for 0 bp 2025-01-31 10:06:24,215 DEBUG chr11:12362251-16094251: Successfully fit background model for 3,293,333 bp. Use segment r for 0 bp 2025-01-31 10:06:24,365 DEBUG chr11:16094251-17287751: Successfully fit background model for 1,077,400 bp. Use segment r for 0 bp 2025-01-31 10:06:24,594 DEBUG chr11:17287751-19356251: Successfully fit background model for 1,900,203 bp. Use segment r for 0 bp 2025-01-31 10:06:25,098 DEBUG chr11:19356251-24085751: Successfully fit background model for 4,451,194 bp. Use segment r for 0 bp 2025-01-31 10:06:25,509 DEBUG chr11:24085751-28725501: Successfully fit background model for 4,189,390 bp. Use segment r for 0 bp 2025-01-31 10:06:25,823 DEBUG chr11:28725501-32193751: Successfully fit background model for 3,173,828 bp. Use segment r for 0 bp 2025-01-31 10:06:25,843 DEBUG chr11:32193751-32325251: Successfully fit background model for 126,054 bp. Use segment r for 0 bp 2025-01-31 10:06:26,349 DEBUG chr11:32325251-37745251: Successfully fit background model for 5,136,180 bp. Use segment r for 0 bp 2025-01-31 10:06:26,728 DEBUG chr11:37745251-42101251: Successfully fit background model for 3,965,579 bp. Use segment r for 0 bp 2025-01-31 10:06:27,336 DEBUG chr11:42101251-48770751: Successfully fit background model for 6,214,240 bp. Use segment r for 0 bp 2025-01-31 10:06:27,358 DEBUG chr11:48770751-48875751: Successfully fit background model for 102,029 bp. Use segment r for 0 bp 2025-01-31 10:06:27,609 DEBUG chr11:48875751-51514501: Successfully fit background model for 2,380,888 bp. Use segment r for 0 bp 2025-01-31 10:06:27,658 DEBUG chr11:51514501-51967751: Successfully fit background model for 440,839 bp. Use segment r for 0 bp 2025-01-31 10:06:28,028 DEBUG chr11:51967751-55554501: Successfully fit background model for 3,452,387 bp. Use segment r for 0 bp 2025-01-31 10:06:28,218 DEBUG chr11:55554501-57617251: Successfully fit background model for 1,925,679 bp. Use segment r for 0 bp 2025-01-31 10:06:28,784 DEBUG chr11:57617251-63083501: Successfully fit background model for 5,197,629 bp. Use segment r for 0 bp 2025-01-31 10:06:29,092 DEBUG chr11:63083501-66560751: Successfully fit background model for 3,332,990 bp. Use segment r for 0 bp 2025-01-31 10:06:29,114 DEBUG chr13:3000500-21158251: Successfully fit background model for 15,924,682 bp. Use segment r for 0 bp 2025-01-31 10:06:29,164 DEBUG chr13:21158251-21371251: Successfully fit background model for 200,826 bp. Use segment r for 0 bp 2025-01-31 10:06:29,206 DEBUG chr13:21371251-21709751: Successfully fit background model for 313,060 bp. Use segment r for 0 bp 2025-01-31 10:06:29,241 DEBUG chr13:21709751-22052251: Successfully fit background model for 286,979 bp. Use segment r for 0 bp 2025-01-31 10:06:29,312 DEBUG chr11:66560751-68965751: Successfully fit background model for 2,343,155 bp. Use segment r for 0 bp 2025-01-31 10:06:29,349 DEBUG chr13:22052251-23264501: Successfully fit background model for 909,567 bp. Use segment r for 0 bp 2025-01-31 10:06:29,401 DEBUG chr13:23264501-23773751: Successfully fit background model for 470,144 bp. Use segment r for 0 bp 2025-01-31 10:06:29,418 DEBUG chr11:68965751-70030251: Successfully fit background model for 1,046,025 bp. Use segment r for 0 bp 2025-01-31 10:06:29,462 DEBUG chr12:3000500-5287751: Successfully fit background model for 2,095,004 bp. Use segment r for 0 bp 2025-01-31 10:06:29,528 DEBUG chr13:23773751-25173751: Successfully fit background model for 1,325,969 bp. Use segment r for 0 bp 2025-01-31 10:06:29,530 DEBUG chr11:70030251-71078751: Successfully fit background model for 1,007,273 bp. Use segment r for 0 bp 2025-01-31 10:06:29,590 DEBUG chr11:71078751-71672751: Successfully fit background model for 516,563 bp. Use segment r for 0 bp 2025-01-31 10:06:29,625 DEBUG chr12:5287751-7018251: Successfully fit background model for 1,561,084 bp. Use segment r for 0 bp 2025-01-31 10:06:29,750 DEBUG chr11:71672751-73329751: Successfully fit background model for 1,613,611 bp. Use segment r for 0 bp 2025-01-31 10:06:29,806 DEBUG chr13:25173751-28064251: Successfully fit background model for 2,581,841 bp. Use segment r for 0 bp 2025-01-31 10:06:29,894 DEBUG chr11:73329751-74828251: Successfully fit background model for 1,302,938 bp. Use segment r for 0 bp 2025-01-31 10:06:29,909 DEBUG chr11:74828251-74928251: Successfully fit background model for 91,943 bp. Use segment r for 0 bp 2025-01-31 10:06:29,917 DEBUG chr12:7018251-10038251: Successfully fit background model for 2,795,987 bp. Use segment r for 0 bp 2025-01-31 10:06:30,359 DEBUG chr11:74928251-79658251: Successfully fit background model for 4,604,546 bp. Use segment r for 0 bp 2025-01-31 10:06:30,567 DEBUG chr12:10038251-16798751: Successfully fit background model for 6,159,683 bp. Use segment r for 0 bp 2025-01-31 10:06:30,637 DEBUG chr11:79658251-82745251: Successfully fit background model for 2,986,210 bp. Use segment r for 0 bp 2025-01-31 10:06:30,692 DEBUG chr13:28064251-33933751: Successfully fit background model for 5,280,797 bp. Use segment r for 318 bp 2025-01-31 10:06:30,725 DEBUG chr12:16798751-18396251: Successfully fit background model for 1,325,470 bp. Use segment r for 0 bp 2025-01-31 10:06:30,737 DEBUG chr13:33933751-34274751: Successfully fit background model for 320,554 bp. Use segment r for 0 bp 2025-01-31 10:06:31,093 DEBUG chr13:34274751-37823751: Successfully fit background model for 3,313,859 bp. Use segment r for 0 bp 2025-01-31 10:06:31,177 DEBUG chr13:37823751-38608251: Successfully fit background model for 769,432 bp. Use segment r for 0 bp 2025-01-31 10:06:31,263 DEBUG chr11:82745251-89471751: Successfully fit background model for 6,458,697 bp. Use segment r for 0 bp 2025-01-31 10:06:31,398 DEBUG chr11:89471751-90810251: Successfully fit background model for 1,272,962 bp. Use segment r for 0 bp 2025-01-31 10:06:31,617 DEBUG chr13:38608251-43148251: Successfully fit background model for 4,304,799 bp. Use segment r for 0 bp 2025-01-31 10:06:31,647 DEBUG chr11:90810251-93284251: Successfully fit background model for 2,277,748 bp. Use segment r for 0 bp 2025-01-31 10:06:31,666 DEBUG chr12:18396251-24555251: Successfully fit background model for 1,966,114 bp. Use segment r for 10,547 bp 2025-01-31 10:06:31,729 DEBUG chr12:24555251-25059751: Successfully fit background model for 487,284 bp. Use segment r for 0 bp 2025-01-31 10:06:31,732 DEBUG chr11:93284251-94126751: Successfully fit background model for 798,824 bp. Use segment r for 0 bp 2025-01-31 10:06:31,998 DEBUG chr11:94126751-96849751: Successfully fit background model for 2,658,676 bp. Use segment r for 0 bp 2025-01-31 10:06:32,191 DEBUG chr11:96849751-98923751: Successfully fit background model for 2,027,349 bp. Use segment r for 0 bp 2025-01-31 10:06:32,319 DEBUG chr11:98923751-100281251: Successfully fit background model for 1,282,923 bp. Use segment r for 0 bp 2025-01-31 10:06:32,357 DEBUG chr13:43148251-49209251: Successfully fit background model for 5,891,975 bp. Use segment r for 0 bp 2025-01-31 10:06:32,376 DEBUG chr15:3050500-5097251: Successfully fit background model for 1,741,917 bp. Use segment r for 0 bp 2025-01-31 10:06:32,565 DEBUG chr11:100281251-102372751: Successfully fit background model for 2,046,858 bp. Use segment r for 0 bp 2025-01-31 10:06:32,703 DEBUG chr15:5097251-8089251: Successfully fit background model for 2,732,577 bp. Use segment r for 0 bp 2025-01-31 10:06:32,819 DEBUG chr13:49209251-54439751: Successfully fit background model for 4,623,794 bp. Use segment r for 0 bp 2025-01-31 10:06:32,829 DEBUG chr15:8089251-9141751: Successfully fit background model for 952,189 bp. Use segment r for 0 bp 2025-01-31 10:06:32,953 DEBUG chr13:54439751-55604751: Successfully fit background model for 1,123,242 bp. Use segment r for 0 bp 2025-01-31 10:06:33,121 DEBUG chr15:9141751-12082251: Successfully fit background model for 2,689,547 bp. Use segment r for 0 bp 2025-01-31 10:06:33,174 DEBUG chr13:55604751-58007751: Successfully fit background model for 2,347,091 bp. Use segment r for 0 bp 2025-01-31 10:06:33,268 DEBUG chr15:12082251-13486751: Successfully fit background model for 1,356,270 bp. Use segment r for 0 bp 2025-01-31 10:06:33,272 DEBUG chr11:102372751-108573251: Successfully fit background model for 5,966,632 bp. Use segment r for 0 bp 2025-01-31 10:06:33,449 DEBUG chr13:58007751-60847751: Successfully fit background model for 2,737,018 bp. Use segment r for 0 bp 2025-01-31 10:06:33,461 DEBUG chr11:108573251-110578251: Successfully fit background model for 1,929,557 bp. Use segment r for 0 bp 2025-01-31 10:06:33,650 DEBUG chr11:110578251-112433751: Successfully fit background model for 1,767,774 bp. Use segment r for 0 bp 2025-01-31 10:06:33,752 DEBUG chr13:60847751-63027251: Successfully fit background model for 1,589,714 bp. Use segment r for 59,616 bp 2025-01-31 10:06:33,785 DEBUG chr12:25059751-36774251: Successfully fit background model for 11,008,564 bp. Use segment r for 0 bp 2025-01-31 10:06:33,884 DEBUG chr13:63027251-64302751: Successfully fit background model for 1,224,127 bp. Use segment r for 0 bp 2025-01-31 10:06:33,915 DEBUG chr11:112433751-115149251: Successfully fit background model for 2,622,393 bp. Use segment r for 0 bp 2025-01-31 10:06:34,048 DEBUG chr12:36774251-39392501: Successfully fit background model for 2,403,801 bp. Use segment r for 0 bp 2025-01-31 10:06:34,415 DEBUG chr12:39392501-41943251: Successfully fit background model for 2,245,334 bp. Use segment r for 131,516 bp 2025-01-31 10:06:34,762 DEBUG chr11:115149251-122082543: Successfully fit background model for 6,617,503 bp. Use segment r for 0 bp 2025-01-31 10:06:34,859 DEBUG chr15:13486751-23158251: Successfully fit background model for 8,635,004 bp. Use segment r for 0 bp 2025-01-31 10:06:35,052 DEBUG chr12:41943251-46794751: Successfully fit background model for 4,314,751 bp. Use segment r for 0 bp 2025-01-31 10:06:35,116 DEBUG chr15:23158251-25547751: Successfully fit background model for 2,126,518 bp. Use segment r for 0 bp 2025-01-31 10:06:35,172 DEBUG chr15:25547751-25999251: Successfully fit background model for 444,506 bp. Use segment r for 0 bp 2025-01-31 10:06:35,259 DEBUG chr12:46794751-48958251: Successfully fit background model for 1,937,124 bp. Use segment r for 0 bp 2025-01-31 10:06:35,313 DEBUG chr15:25999251-27044251: Successfully fit background model for 960,801 bp. Use segment r for 0 bp 2025-01-31 10:06:35,401 DEBUG chr15:27044251-27872751: Successfully fit background model for 783,952 bp. Use segment r for 0 bp 2025-01-31 10:06:35,589 DEBUG chr16:3016500-3844751: Successfully fit background model for 381,991 bp. Use segment r for 1,102 bp 2025-01-31 10:06:35,692 DEBUG chr13:64302751-72261251: Successfully fit background model for 5,904,355 bp. Use segment r for 20,384 bp 2025-01-31 10:06:35,726 DEBUG chr16:3844751-5272751: Successfully fit background model for 1,369,634 bp. Use segment r for 0 bp 2025-01-31 10:06:35,797 DEBUG chr15:27872751-31183001: Successfully fit background model for 2,997,164 bp. Use segment r for 0 bp 2025-01-31 10:06:35,857 DEBUG chr15:31183001-31673751: Successfully fit background model for 470,711 bp. Use segment r for 0 bp 2025-01-31 10:06:35,936 DEBUG chr12:48958251-54093751: Successfully fit background model for 4,705,550 bp. Use segment r for 0 bp 2025-01-31 10:06:35,951 DEBUG chr13:72261251-74892751: Successfully fit background model for 2,461,739 bp. Use segment r for 0 bp 2025-01-31 10:06:36,009 DEBUG chr16:5272751-8057251: Successfully fit background model for 2,667,700 bp. Use segment r for 0 bp 2025-01-31 10:06:36,108 DEBUG chr15:31673751-33803751: Successfully fit background model for 1,891,246 bp. Use segment r for 0 bp 2025-01-31 10:06:36,108 DEBUG chr12:54093751-55811251: Successfully fit background model for 1,429,508 bp. Use segment r for 0 bp 2025-01-31 10:06:36,113 DEBUG chr16:8057251-9062251: Successfully fit background model for 938,175 bp. Use segment r for 0 bp 2025-01-31 10:06:36,159 DEBUG chr13:74892751-76615251: Successfully fit background model for 1,560,206 bp. Use segment r for 0 bp 2025-01-31 10:06:36,219 DEBUG chr16:9062251-9893751: Successfully fit background model for 786,381 bp. Use segment r for 0 bp 2025-01-31 10:06:36,423 DEBUG chr13:76615251-78162751: Successfully fit background model for 1,349,910 bp. Use segment r for 2,539 bp 2025-01-31 10:06:36,471 DEBUG chr13:78162751-78591251: Successfully fit background model for 383,823 bp. Use segment r for 0 bp 2025-01-31 10:06:36,560 DEBUG chr12:55811251-59939251: Successfully fit background model for 3,736,319 bp. Use segment r for 0 bp 2025-01-31 10:06:36,721 DEBUG chr13:78591251-80880251: Successfully fit background model for 2,061,351 bp. Use segment r for 0 bp 2025-01-31 10:06:36,733 DEBUG chr13:80880251-80931251: Successfully fit background model for 50,842 bp. Use segment r for 0 bp 2025-01-31 10:06:36,747 DEBUG chr15:33803751-39118751: Successfully fit background model for 4,810,700 bp. Use segment r for 0 bp 2025-01-31 10:06:36,782 DEBUG chr16:9893751-14500251: Successfully fit background model for 4,355,497 bp. Use segment r for 0 bp 2025-01-31 10:06:36,805 DEBUG chr13:80931251-81625501: Successfully fit background model for 652,542 bp. Use segment r for 0 bp 2025-01-31 10:06:36,826 DEBUG chr13:81625501-81785251: Successfully fit background model for 149,907 bp. Use segment r for 0 bp 2025-01-31 10:06:36,882 DEBUG chr12:59939251-63348751: Successfully fit background model for 3,001,255 bp. Use segment r for 0 bp 2025-01-31 10:06:37,052 DEBUG chr13:81785251-83695751: Successfully fit background model for 1,753,261 bp. Use segment r for 0 bp 2025-01-31 10:06:37,068 DEBUG chr13:83695751-83780751: Successfully fit background model for 82,565 bp. Use segment r for 0 bp 2025-01-31 10:06:37,162 DEBUG chr16:14500251-17110251: Successfully fit background model for 2,284,878 bp. Use segment r for 0 bp 2025-01-31 10:06:37,231 DEBUG chr13:83780751-85449501: Successfully fit background model for 1,504,728 bp. Use segment r for 0 bp 2025-01-31 10:06:37,352 DEBUG chr16:17110251-19021751: Successfully fit background model for 1,839,403 bp. Use segment r for 0 bp 2025-01-31 10:06:37,385 DEBUG chr15:39118751-44912251: Successfully fit background model for 5,304,295 bp. Use segment r for 0 bp 2025-01-31 10:06:37,436 DEBUG chr16:19021751-19719251: Successfully fit background model for 547,532 bp. Use segment r for 0 bp 2025-01-31 10:06:37,501 DEBUG chr12:63348751-69154251: Successfully fit background model for 5,213,132 bp. Use segment r for 0 bp 2025-01-31 10:06:37,601 DEBUG chr13:85449501-88824251: Successfully fit background model for 2,917,878 bp. Use segment r for 0 bp 2025-01-31 10:06:37,813 DEBUG chr13:88824251-90842751: Successfully fit background model for 1,879,734 bp. Use segment r for 0 bp 2025-01-31 10:06:37,872 DEBUG chr16:19719251-23210751: Successfully fit background model for 3,260,799 bp. Use segment r for 0 bp 2025-01-31 10:06:37,925 DEBUG chr15:44912251-50079251: Successfully fit background model for 4,630,736 bp. Use segment r for 0 bp 2025-01-31 10:06:37,964 DEBUG chr12:69154251-73900251: Successfully fit background model for 4,546,925 bp. Use segment r for 0 bp 2025-01-31 10:06:38,180 DEBUG chr12:73900251-76176751: Successfully fit background model for 2,148,792 bp. Use segment r for 0 bp 2025-01-31 10:06:38,198 DEBUG chr15:50079251-52743251: Successfully fit background model for 2,437,960 bp. Use segment r for 0 bp 2025-01-31 10:06:38,243 DEBUG chr12:76176751-76765501: Successfully fit background model for 548,484 bp. Use segment r for 0 bp 2025-01-31 10:06:38,621 DEBUG chr16:23210751-29439251: Successfully fit background model for 5,845,382 bp. Use segment r for 0 bp 2025-01-31 10:06:38,771 DEBUG chr15:52743251-57834751: Successfully fit background model for 4,650,002 bp. Use segment r for 0 bp 2025-01-31 10:06:38,971 DEBUG chr12:76765501-83071751: Successfully fit background model for 5,920,719 bp. Use segment r for 0 bp 2025-01-31 10:06:38,984 DEBUG chr15:57834751-59882251: Successfully fit background model for 1,980,809 bp. Use segment r for 0 bp 2025-01-31 10:06:39,355 DEBUG chr12:83071751-87142251: Successfully fit background model for 3,967,714 bp. Use segment r for 0 bp 2025-01-31 10:06:39,452 DEBUG chr13:90842751-101772251: Successfully fit background model for 10,280,283 bp. Use segment r for 0 bp 2025-01-31 10:06:39,852 DEBUG chr12:87142251-92108751: Successfully fit background model for 4,231,079 bp. Use segment r for 0 bp 2025-01-31 10:06:39,976 DEBUG chr16:29439251-39149251: Successfully fit background model for 9,284,918 bp. Use segment r for 0 bp 2025-01-31 10:06:40,340 DEBUG chr16:39149251-43010251: Successfully fit background model for 3,595,714 bp. Use segment r for 0 bp 2025-01-31 10:06:40,422 DEBUG chr15:59882251-68452251: Successfully fit background model for 7,803,103 bp. Use segment r for 0 bp 2025-01-31 10:06:40,504 DEBUG chr12:92108751-97502751: Successfully fit background model for 4,854,134 bp. Use segment r for 0 bp 2025-01-31 10:06:40,630 DEBUG chr12:97502751-98733251: Successfully fit background model for 1,121,292 bp. Use segment r for 0 bp 2025-01-31 10:06:40,660 DEBUG chr16:43010251-46159751: Successfully fit background model for 2,956,768 bp. Use segment r for 0 bp 2025-01-31 10:06:40,783 DEBUG chr15:68452251-71728751: Successfully fit background model for 2,974,245 bp. Use segment r for 0 bp 2025-01-31 10:06:40,988 DEBUG chr15:71728751-73060251: Successfully fit background model for 1,278,825 bp. Use segment r for 574 bp 2025-01-31 10:06:41,008 DEBUG chr16:46159751-49770751: Successfully fit background model for 3,176,258 bp. Use segment r for 0 bp 2025-01-31 10:06:41,019 DEBUG chr15:73060251-73193251: Successfully fit background model for 125,458 bp. Use segment r for 0 bp 2025-01-31 10:06:41,029 DEBUG chr13:101772251-111681751: Successfully fit background model for 9,200,015 bp. Use segment r for 0 bp 2025-01-31 10:06:41,111 DEBUG chr12:98733251-102684751: Successfully fit background model for 3,721,018 bp. Use segment r for 0 bp 2025-01-31 10:06:41,122 DEBUG chr16:49770751-50764751: Successfully fit background model for 960,534 bp. Use segment r for 0 bp 2025-01-31 10:06:41,130 DEBUG chr12:102684751-102759251: Successfully fit background model for 73,489 bp. Use segment r for 0 bp 2025-01-31 10:06:41,253 DEBUG chr13:111681751-113781751: Successfully fit background model for 1,985,138 bp. Use segment r for 0 bp 2025-01-31 10:06:41,305 DEBUG chr15:73193251-75855501: Successfully fit background model for 2,494,181 bp. Use segment r for 0 bp 2025-01-31 10:06:41,414 DEBUG chr13:113781751-115172751: Successfully fit background model for 1,342,032 bp. Use segment r for 0 bp 2025-01-31 10:06:41,491 DEBUG chr12:102759251-104932251: Successfully fit background model for 2,018,743 bp. Use segment r for 1,979 bp 2025-01-31 10:06:41,512 DEBUG chr12:104932251-105057251: Successfully fit background model for 122,259 bp. Use segment r for 0 bp 2025-01-31 10:06:41,869 DEBUG chr13:115172751-119388251: Successfully fit background model for 3,855,313 bp. Use segment r for 0 bp 2025-01-31 10:06:41,943 DEBUG chr16:50764751-55813751: Successfully fit background model for 4,502,664 bp. Use segment r for 4,411 bp 2025-01-31 10:06:41,980 DEBUG chr16:55813751-56078251: Successfully fit background model for 233,986 bp. Use segment r for 0 bp 2025-01-31 10:06:42,032 DEBUG chr13:119388251-120421639: Successfully fit background model for 440,782 bp. Use segment r for 145 bp 2025-01-31 10:06:42,135 DEBUG chr12:105057251-110371501: Successfully fit background model for 5,134,862 bp. Use segment r for 0 bp 2025-01-31 10:06:42,172 DEBUG chr15:75855501-82381251: Successfully fit background model for 6,241,907 bp. Use segment r for 0 bp 2025-01-31 10:06:42,245 DEBUG chr16:56078251-58405751: Successfully fit background model for 2,089,832 bp. Use segment r for 0 bp 2025-01-31 10:06:42,286 DEBUG chr16:58405751-58753751: Successfully fit background model for 321,900 bp. Use segment r for 0 bp 2025-01-31 10:06:42,408 DEBUG chr12:110371501-113227251: Successfully fit background model for 2,774,561 bp. Use segment r for 0 bp 2025-01-31 10:06:42,420 DEBUG chr15:82381251-84741251: Successfully fit background model for 2,231,738 bp. Use segment r for 0 bp 2025-01-31 10:06:42,677 DEBUG chr12:113227251-115630751: Successfully fit background model for 2,006,898 bp. Use segment r for 0 bp 2025-01-31 10:06:42,814 DEBUG chr15:84741251-88731251: Successfully fit background model for 3,876,314 bp. Use segment r for 0 bp 2025-01-31 10:06:42,893 DEBUG chr16:58753751-64418751: Successfully fit background model for 5,017,758 bp. Use segment r for 0 bp 2025-01-31 10:06:42,943 DEBUG chr15:88731251-89703751: Successfully fit background model for 920,714 bp. Use segment r for 0 bp 2025-01-31 10:06:43,130 DEBUG chr12:115630751-120129022: Successfully fit background model for 3,967,063 bp. Use segment r for 0 bp 2025-01-31 10:06:43,209 DEBUG chr15:89703751-91885251: Successfully fit background model for 2,046,849 bp. Use segment r for 0 bp 2025-01-31 10:06:44,117 DEBUG chr15:91885251-98501251: Successfully fit background model for 6,266,894 bp. Use segment r for 0 bp 2025-01-31 10:06:44,593 DEBUG chr15:98501251-103371251: Successfully fit background model for 4,716,409 bp. Use segment r for 0 bp 2025-01-31 10:06:44,682 DEBUG chr15:103371251-104043685: Successfully fit background model for 425,654 bp. Use segment r for 0 bp 2025-01-31 10:06:45,140 DEBUG chr17:3000000-15871251: Successfully fit background model for 10,847,975 bp. Use segment r for 0 bp 2025-01-31 10:06:46,520 DEBUG chr17:15871251-23531251: Successfully fit background model for 6,298,332 bp. Use segment r for 16,239 bp 2025-01-31 10:06:47,073 DEBUG chr17:23531251-29380751: Successfully fit background model for 5,661,586 bp. Use segment r for 0 bp 2025-01-31 10:06:47,209 DEBUG chr16:64418751-87352751: Successfully fit background model for 20,849,529 bp. Use segment r for 0 bp 2025-01-31 10:06:47,293 DEBUG chr16:87352751-87747001: Successfully fit background model for 380,332 bp. Use segment r for 0 bp 2025-01-31 10:06:47,380 DEBUG chr17:29380751-32601751: Successfully fit background model for 3,125,814 bp. Use segment r for 0 bp 2025-01-31 10:06:47,536 DEBUG chr17:32601751-33816751: Successfully fit background model for 1,031,759 bp. Use segment r for 0 bp 2025-01-31 10:06:47,555 DEBUG chr16:87747001-89764251: Successfully fit background model for 1,867,476 bp. Use segment r for 0 bp 2025-01-31 10:06:47,573 DEBUG chr17:33816751-34141251: Successfully fit background model for 307,221 bp. Use segment r for 0 bp 2025-01-31 10:06:47,641 DEBUG chr17:34141251-34585251: Successfully fit background model for 411,083 bp. Use segment r for 0 bp 2025-01-31 10:06:47,852 DEBUG chr17:34585251-36338251: Successfully fit background model for 1,560,445 bp. Use segment r for 0 bp 2025-01-31 10:06:47,929 DEBUG chr17:36338251-37083751: Successfully fit background model for 655,926 bp. Use segment r for 0 bp 2025-01-31 10:06:48,096 DEBUG chr16:89764251-94463251: Successfully fit background model for 4,556,812 bp. Use segment r for 0 bp 2025-01-31 10:06:48,349 DEBUG chr17:37083751-40456751: Successfully fit background model for 2,862,239 bp. Use segment r for 0 bp 2025-01-31 10:06:48,434 DEBUG chr16:94463251-98207768: Successfully fit background model for 3,485,502 bp. Use segment r for 0 bp 2025-01-31 10:06:48,958 DEBUG chr17:40456751-44415751: Successfully fit background model for 3,559,906 bp. Use segment r for 0 bp 2025-01-31 10:06:49,070 DEBUG chr17:44415751-45544751: Successfully fit background model for 1,084,601 bp. Use segment r for 0 bp 2025-01-31 10:06:49,404 DEBUG chr17:45544751-48468251: Successfully fit background model for 2,827,759 bp. Use segment r for 0 bp 2025-01-31 10:06:49,933 DEBUG chr17:48468251-53729751: Successfully fit background model for 4,957,860 bp. Use segment r for 0 bp 2025-01-31 10:06:50,103 DEBUG chr17:53729751-55466751: Successfully fit background model for 1,473,509 bp. Use segment r for 0 bp 2025-01-31 10:06:50,184 DEBUG chr17:55466751-56038751: Successfully fit background model for 495,828 bp. Use segment r for 0 bp 2025-01-31 10:06:50,308 DEBUG chr17:56038751-57359251: Successfully fit background model for 1,293,942 bp. Use segment r for 0 bp 2025-01-31 10:06:50,804 DEBUG chr17:57359251-61964251: Successfully fit background model for 4,118,848 bp. Use segment r for 0 bp 2025-01-31 10:06:52,907 DEBUG chr17:61964251-76003751: Successfully fit background model for 13,187,957 bp. Use segment r for 0 bp 2025-01-31 10:06:53,090 DEBUG chr17:76003751-77765251: Successfully fit background model for 1,613,994 bp. Use segment r for 0 bp 2025-01-31 10:06:53,447 DEBUG chr17:77765251-81246501: Successfully fit background model for 3,308,784 bp. Use segment r for 0 bp 2025-01-31 10:06:53,582 DEBUG chr17:81246501-82695751: Successfully fit background model for 1,316,248 bp. Use segment r for 0 bp 2025-01-31 10:06:54,187 DEBUG chr17:82695751-89098251: Successfully fit background model for 6,154,365 bp. Use segment r for 0 bp 2025-01-31 10:06:54,754 DEBUG chr17:89098251-94987271: Successfully fit background model for 5,231,676 bp. Use segment r for 0 bp 2025-01-31 10:07:45,104 DEBUG chr18:3000500-4918751: Successfully fit background model for 1,653,050 bp. Use segment r for 0 bp 2025-01-31 10:07:45,324 DEBUG chr18:4918751-7133751: Successfully fit background model for 1,997,838 bp. Use segment r for 0 bp 2025-01-31 10:07:46,314 DEBUG chr18:7133751-15788751: Successfully fit background model for 7,953,952 bp. Use segment r for 0 bp 2025-01-31 10:07:46,684 DEBUG chr18:15788751-19563751: Successfully fit background model for 3,377,773 bp. Use segment r for 0 bp 2025-01-31 10:07:47,372 DEBUG chr18:19563751-26476751: Successfully fit background model for 6,415,838 bp. Use segment r for 0 bp 2025-01-31 10:07:47,690 DEBUG chr19:3087500-3905751: Successfully fit background model for 740,694 bp. Use segment r for 0 bp 2025-01-31 10:07:47,835 DEBUG chr18:26476751-31609251: Successfully fit background model for 4,724,744 bp. Use segment r for 0 bp 2025-01-31 10:07:47,952 DEBUG chr18:31609251-32521751: Successfully fit background model for 878,266 bp. Use segment r for 0 bp 2025-01-31 10:07:48,074 DEBUG chr19:3905751-7619251: Successfully fit background model for 3,493,101 bp. Use segment r for 0 bp 2025-01-31 10:07:48,108 DEBUG chr18:32521751-34076751: Successfully fit background model for 1,397,796 bp. Use segment r for 0 bp 2025-01-31 10:07:48,136 DEBUG chr19:7619251-8152751: Successfully fit background model for 392,230 bp. Use segment r for 0 bp 2025-01-31 10:07:48,250 DEBUG chr19:8152751-9139251: Successfully fit background model for 871,602 bp. Use segment r for 0 bp 2025-01-31 10:07:48,325 DEBUG chr19:9139251-9863251: Successfully fit background model for 400,052 bp. Use segment r for 0 bp 2025-01-31 10:07:48,416 DEBUG chr18:34076751-36803751: Successfully fit background model for 2,660,426 bp. Use segment r for 0 bp 2025-01-31 10:07:48,438 DEBUG chr19:9863251-10994251: Successfully fit background model for 1,112,351 bp. Use segment r for 0 bp 2025-01-31 10:07:48,496 DEBUG chr19:10994251-11555251: Successfully fit background model for 497,570 bp. Use segment r for 0 bp 2025-01-31 10:07:48,517 DEBUG chr18:36803751-37812751: Successfully fit background model for 877,867 bp. Use segment r for 0 bp 2025-01-31 10:07:48,544 DEBUG chr19:11555251-12022251: Successfully fit background model for 433,485 bp. Use segment r for 0 bp 2025-01-31 10:07:48,723 DEBUG chr18:37812751-39493251: Successfully fit background model for 1,653,676 bp. Use segment r for 0 bp 2025-01-31 10:07:49,094 DEBUG chr19:12022251-15468251: Successfully fit background model for 3,112,978 bp. Use segment r for 3,689 bp 2025-01-31 10:07:49,288 DEBUG chr19:15468251-17463751: Successfully fit background model for 1,913,973 bp. Use segment r for 0 bp 2025-01-31 10:07:49,457 DEBUG chr18:39493251-46372751: Successfully fit background model for 6,309,333 bp. Use segment r for 0 bp 2025-01-31 10:07:49,464 DEBUG chr19:17463751-18840751: Successfully fit background model for 1,285,571 bp. Use segment r for 0 bp 2025-01-31 10:07:49,567 DEBUG chr18:46372751-47381251: Successfully fit background model for 959,481 bp. Use segment r for 0 bp 2025-01-31 10:07:49,597 DEBUG chr19:18840751-20228751: Successfully fit background model for 1,293,374 bp. Use segment r for 0 bp 2025-01-31 10:07:49,953 DEBUG chr19:20228751-23966251: Successfully fit background model for 3,513,634 bp. Use segment r for 0 bp 2025-01-31 10:07:50,051 DEBUG chr19:23966251-24938751: Successfully fit background model for 937,502 bp. Use segment r for 0 bp 2025-01-31 10:07:50,298 DEBUG chr19:24938751-26972751: Successfully fit background model for 1,921,046 bp. Use segment r for 0 bp 2025-01-31 10:07:50,901 DEBUG chr18:47381251-56562501: Successfully fit background model for 8,462,631 bp. Use segment r for 0 bp 2025-01-31 10:07:50,940 DEBUG chr18:56562501-56726751: Successfully fit background model for 159,045 bp. Use segment r for 0 bp 2025-01-31 10:07:51,054 DEBUG chr19:26972751-32905751: Successfully fit background model for 5,677,805 bp. Use segment r for 0 bp 2025-01-31 10:07:51,316 DEBUG chr19:32905751-35630751: Successfully fit background model for 2,423,208 bp. Use segment r for 0 bp 2025-01-31 10:07:51,366 DEBUG chr18:56726751-60458751: Successfully fit background model for 3,469,089 bp. Use segment r for 0 bp 2025-01-31 10:07:51,498 DEBUG chr18:60458751-61688751: Successfully fit background model for 1,205,112 bp. Use segment r for 0 bp 2025-01-31 10:07:51,695 DEBUG chr19:35630751-38936251: Successfully fit background model for 3,164,183 bp. Use segment r for 0 bp 2025-01-31 10:07:51,837 DEBUG chr19:38936251-40376251: Successfully fit background model for 1,137,633 bp. Use segment r for 0 bp 2025-01-31 10:07:52,178 DEBUG chr19:40376251-42944751: Successfully fit background model for 2,490,088 bp. Use segment r for 0 bp 2025-01-31 10:07:52,186 DEBUG chr18:61688751-67202251: Successfully fit background model for 5,266,845 bp. Use segment r for 0 bp 2025-01-31 10:07:52,235 DEBUG chr19:42944751-43434751: Successfully fit background model for 445,366 bp. Use segment r for 0 bp 2025-01-31 10:07:52,249 DEBUG chr18:67202251-67669251: Successfully fit background model for 457,839 bp. Use segment r for 0 bp 2025-01-31 10:07:52,567 DEBUG chr19:43434751-46864751: Successfully fit background model for 3,330,632 bp. Use segment r for 0 bp 2025-01-31 10:07:52,636 DEBUG chr18:67669251-71331751: Successfully fit background model for 3,417,334 bp. Use segment r for 0 bp 2025-01-31 10:07:52,756 DEBUG chr19:46864751-48825751: Successfully fit background model for 1,895,668 bp. Use segment r for 0 bp 2025-01-31 10:07:52,887 DEBUG chr18:71331751-73568751: Successfully fit background model for 2,071,797 bp. Use segment r for 0 bp 2025-01-31 10:07:53,082 DEBUG chr19:48825751-51652751: Successfully fit background model for 2,606,651 bp. Use segment r for 0 bp 2025-01-31 10:07:53,380 DEBUG chr18:73568751-78109251: Successfully fit background model for 4,267,787 bp. Use segment r for 0 bp 2025-01-31 10:07:54,316 DEBUG chr18:78109251-85722751: Successfully fit background model for 7,132,358 bp. Use segment r for 0 bp 2025-01-31 10:07:54,686 DEBUG chr19:51652751-61431566: Successfully fit background model for 9,251,432 bp. Use segment r for 0 bp 2025-01-31 10:07:54,798 DEBUG chr18:85722751-90702639: Successfully fit background model for 4,210,308 bp. Use segment r for 0 bp 2025-01-31 10:09:03,089 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:09:03,090 INFO Calculating per-bp p-values 2025-01-31 10:09:03,091 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:09:03,150 DEBUG chr1: Calculating p-values 2025-01-31 10:09:03,153 DEBUG chr3: Calculating p-values 2025-01-31 10:09:03,154 DEBUG chr4: Calculating p-values 2025-01-31 10:09:03,154 DEBUG chr2: Calculating p-values 2025-01-31 10:09:03,155 DEBUG chr5: Calculating p-values 2025-01-31 10:09:03,155 DEBUG chrX: Calculating p-values 2025-01-31 10:09:31,370 DEBUG Saving p-values for chrX 2025-01-31 10:09:37,884 DEBUG Saving p-values for chr3 2025-01-31 10:09:40,268 DEBUG Saving p-values for chr5 2025-01-31 10:09:43,488 DEBUG Saving p-values for chr4 2025-01-31 10:09:50,228 DEBUG Saving p-values for chr2 2025-01-31 10:09:56,968 DEBUG Saving p-values for chr1 2025-01-31 10:10:06,795 DEBUG chr6: Calculating p-values 2025-01-31 10:10:08,472 DEBUG chr7: Calculating p-values 2025-01-31 10:10:11,255 DEBUG chr10: Calculating p-values 2025-01-31 10:10:11,697 DEBUG chr8: Calculating p-values 2025-01-31 10:10:31,046 DEBUG chr14: Calculating p-values 2025-01-31 10:10:34,469 DEBUG chr9: Calculating p-values 2025-01-31 10:10:41,374 DEBUG Saving p-values for chr10 2025-01-31 10:10:41,741 DEBUG Saving p-values for chr6 2025-01-31 10:10:47,048 DEBUG Saving p-values for chr8 2025-01-31 10:10:48,270 DEBUG Saving p-values for chr7 2025-01-31 10:10:57,699 DEBUG Saving p-values for chr14 2025-01-31 10:11:04,637 DEBUG chr11: Calculating p-values 2025-01-31 10:11:08,119 DEBUG Saving p-values for chr9 2025-01-31 10:11:09,848 DEBUG chr13: Calculating p-values 2025-01-31 10:11:14,137 DEBUG chr12: Calculating p-values 2025-01-31 10:11:19,264 DEBUG chr15: Calculating p-values 2025-01-31 10:11:20,208 DEBUG chr16: Calculating p-values 2025-01-31 10:11:32,460 DEBUG chr17: Calculating p-values 2025-01-31 10:11:40,641 DEBUG Saving p-values for chr12 2025-01-31 10:11:42,912 DEBUG Saving p-values for chr13 2025-01-31 10:11:46,056 DEBUG Saving p-values for chr16 2025-01-31 10:11:47,922 DEBUG Saving p-values for chr11 2025-01-31 10:11:51,194 DEBUG Saving p-values for chr15 2025-01-31 10:11:57,102 DEBUG Saving p-values for chr17 2025-01-31 10:12:02,565 DEBUG chrY: Calculating p-values 2025-01-31 10:12:04,269 DEBUG chr18: Calculating p-values 2025-01-31 10:12:05,761 DEBUG chr19: Calculating p-values 2025-01-31 10:12:20,973 DEBUG Saving p-values for chr18 2025-01-31 10:12:22,168 DEBUG Saving p-values for chr19 2025-01-31 10:12:41,659 DEBUG Results of calc_pvals emitted. 2025-01-31 10:12:41,660 INFO Converting threshold values to bigwig 2025-01-31 10:12:41,660 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:12:59,731 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:13:31,323 INFO Converting background quantile values to bigwig 2025-01-31 10:13:31,323 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:14:07,998 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:14:36,664 INFO Calculating per-bp FDRs 2025-01-31 10:14:36,666 DEBUG AG81948: Extracting raw P-values 2025-01-31 10:15:15,224 DEBUG AG81948: Computing FDR 2025-01-31 10:15:35,352 DEBUG AG81948: Saving FDRs to parquet 2025-01-31 10:16:31,139 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:16:31,143 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:16:31,143 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:34,983 DEBUG chr5: Calling hotspots 2025-01-31 10:16:35,176 DEBUG chrX: Calling hotspots 2025-01-31 10:16:35,194 DEBUG chr4: Calling hotspots 2025-01-31 10:16:35,308 DEBUG chr3: Calling hotspots 2025-01-31 10:16:35,693 DEBUG chr2: Calling hotspots 2025-01-31 10:16:35,737 DEBUG chr1: Calling hotspots 2025-01-31 10:16:38,789 DEBUG chr5: 5635 hotspots called 2025-01-31 10:16:39,375 DEBUG chr4: 5720 hotspots called 2025-01-31 10:16:39,602 DEBUG chr3: 4568 hotspots called 2025-01-31 10:16:39,627 DEBUG chrX: 2734 hotspots called 2025-01-31 10:16:40,768 DEBUG chr2: 7140 hotspots called 2025-01-31 10:16:41,018 DEBUG chr1: 6212 hotspots called 2025-01-31 10:16:41,393 DEBUG chr6: Calling hotspots 2025-01-31 10:16:42,128 DEBUG chr10: Calling hotspots 2025-01-31 10:16:42,248 DEBUG chr7: Calling hotspots 2025-01-31 10:16:42,409 DEBUG chr8: Calling hotspots 2025-01-31 10:16:43,295 DEBUG chr14: Calling hotspots 2025-01-31 10:16:43,545 DEBUG chr9: Calling hotspots 2025-01-31 10:16:46,443 DEBUG chr6: 4571 hotspots called 2025-01-31 10:16:47,680 DEBUG chr8: 4221 hotspots called 2025-01-31 10:16:47,687 DEBUG chr10: 4410 hotspots called 2025-01-31 10:16:47,910 DEBUG chr14: 3088 hotspots called 2025-01-31 10:16:47,993 DEBUG chr9: 4914 hotspots called 2025-01-31 10:16:48,022 DEBUG chr7: 5366 hotspots called 2025-01-31 10:16:48,817 DEBUG chr11: Calling hotspots 2025-01-31 10:16:49,825 DEBUG chr17: Calling hotspots 2025-01-31 10:16:50,086 DEBUG chr15: Calling hotspots 2025-01-31 10:16:50,113 DEBUG chr12: Calling hotspots 2025-01-31 10:16:50,203 DEBUG chr13: Calling hotspots 2025-01-31 10:16:50,322 DEBUG chr16: Calling hotspots 2025-01-31 10:16:51,830 DEBUG chr11: 6193 hotspots called 2025-01-31 10:16:52,320 DEBUG chr17: 3862 hotspots called 2025-01-31 10:16:52,796 DEBUG chr15: 3579 hotspots called 2025-01-31 10:16:52,919 DEBUG chr16: 3079 hotspots called 2025-01-31 10:16:53,132 DEBUG chr12: 3301 hotspots called 2025-01-31 10:16:53,273 DEBUG chr18: Calling hotspots 2025-01-31 10:16:53,273 DEBUG chr13: 4336 hotspots called 2025-01-31 10:16:53,344 DEBUG chr19: Calling hotspots 2025-01-31 10:16:54,867 DEBUG chr19: 2882 hotspots called 2025-01-31 10:16:55,429 DEBUG chr18: 2563 hotspots called 2025-01-31 10:16:55,685 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:55,733 INFO There are 88374 hotspots called at FDR=0.05 2025-01-31 10:16:59,966 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:16:59,967 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:08,316 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:17:08,653 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:17:08,953 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:17:09,185 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:17:09,959 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:17:10,571 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:17:15,255 DEBUG chr5: 6934 peaks called 2025-01-31 10:17:15,782 DEBUG chr4: 7053 peaks called 2025-01-31 10:17:16,349 DEBUG chrX: 3217 peaks called 2025-01-31 10:17:16,444 DEBUG chr3: 5563 peaks called 2025-01-31 10:17:16,942 DEBUG chr2: 8812 peaks called 2025-01-31 10:17:17,954 DEBUG chr1: 7434 peaks called 2025-01-31 10:17:22,240 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:17:22,939 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:17:22,953 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:17:23,078 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:17:23,110 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:17:24,201 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:17:26,526 DEBUG chr6: 5583 peaks called 2025-01-31 10:17:26,782 DEBUG chr8: 5303 peaks called 2025-01-31 10:17:26,914 DEBUG chr14: 3694 peaks called 2025-01-31 10:17:26,943 DEBUG chr10: 5435 peaks called 2025-01-31 10:17:27,191 DEBUG chr7: 6837 peaks called 2025-01-31 10:17:27,826 DEBUG chr9: 6098 peaks called 2025-01-31 10:17:31,811 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:17:31,883 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:17:32,288 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:17:32,316 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:17:32,478 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:17:32,536 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:17:34,711 DEBUG chr16: 3716 peaks called 2025-01-31 10:17:34,786 DEBUG chr15: 4421 peaks called 2025-01-31 10:17:35,019 DEBUG chr17: 4885 peaks called 2025-01-31 10:17:35,797 DEBUG chr11: 8135 peaks called 2025-01-31 10:17:35,877 DEBUG chr12: 4074 peaks called 2025-01-31 10:17:36,109 DEBUG chr13: 5416 peaks called 2025-01-31 10:17:37,075 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:17:37,384 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:17:38,748 DEBUG chr19: 3775 peaks called 2025-01-31 10:17:39,765 DEBUG chr18: 3035 peaks called 2025-01-31 10:17:40,029 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:40,069 INFO There are 109420 peaks called at FDR=0.05 2025-01-31 10:17:41,804 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:17:41,804 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:17:45,085 DEBUG chr4: Calling hotspots 2025-01-31 10:17:45,104 DEBUG chr5: Calling hotspots 2025-01-31 10:17:45,311 DEBUG chr3: Calling hotspots 2025-01-31 10:17:45,526 DEBUG chrX: Calling hotspots 2025-01-31 10:17:45,720 DEBUG chr2: Calling hotspots 2025-01-31 10:17:45,906 DEBUG chr1: Calling hotspots 2025-01-31 10:17:48,706 DEBUG chr5: 4439 hotspots called 2025-01-31 10:17:48,767 DEBUG chr4: 4529 hotspots called 2025-01-31 10:17:49,120 DEBUG chr3: 3527 hotspots called 2025-01-31 10:17:49,507 DEBUG chrX: 1967 hotspots called 2025-01-31 10:17:50,150 DEBUG chr2: 5700 hotspots called 2025-01-31 10:17:50,465 DEBUG chr1: 4668 hotspots called 2025-01-31 10:17:51,395 DEBUG chr7: Calling hotspots 2025-01-31 10:17:51,434 DEBUG chr10: Calling hotspots 2025-01-31 10:17:51,606 DEBUG chr6: Calling hotspots 2025-01-31 10:17:51,832 DEBUG chr8: Calling hotspots 2025-01-31 10:17:52,386 DEBUG chr14: Calling hotspots 2025-01-31 10:17:52,867 DEBUG chr9: Calling hotspots 2025-01-31 10:17:54,417 DEBUG chr10: 3443 hotspots called 2025-01-31 10:17:54,715 DEBUG chr7: 4365 hotspots called 2025-01-31 10:17:54,787 DEBUG chr8: 3351 hotspots called 2025-01-31 10:17:54,978 DEBUG chr6: 3555 hotspots called 2025-01-31 10:17:55,272 DEBUG chr14: 2304 hotspots called 2025-01-31 10:17:55,800 DEBUG chr9: 3927 hotspots called 2025-01-31 10:17:56,792 DEBUG chr11: Calling hotspots 2025-01-31 10:17:56,891 DEBUG chr15: Calling hotspots 2025-01-31 10:17:56,936 DEBUG chr12: Calling hotspots 2025-01-31 10:17:57,013 DEBUG chr13: Calling hotspots 2025-01-31 10:17:57,019 DEBUG chr16: Calling hotspots 2025-01-31 10:17:57,487 DEBUG chr17: Calling hotspots 2025-01-31 10:17:59,261 DEBUG chr16: 2359 hotspots called 2025-01-31 10:17:59,268 DEBUG chr15: 2811 hotspots called 2025-01-31 10:17:59,625 DEBUG chr11: 5147 hotspots called 2025-01-31 10:17:59,722 DEBUG chr17: 3085 hotspots called 2025-01-31 10:17:59,786 DEBUG chr12: 2593 hotspots called 2025-01-31 10:17:59,941 DEBUG chr13: 3376 hotspots called 2025-01-31 10:18:00,215 DEBUG chr19: Calling hotspots 2025-01-31 10:18:00,473 DEBUG chr18: Calling hotspots 2025-01-31 10:18:01,613 DEBUG chr19: 2343 hotspots called 2025-01-31 10:18:02,433 DEBUG chr18: 1937 hotspots called 2025-01-31 10:18:02,618 DEBUG Results of call_hotspots emitted. 2025-01-31 10:18:02,649 INFO There are 69426 hotspots called at FDR=0.01 2025-01-31 10:18:05,780 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:18:05,781 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:18:13,396 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:18:13,572 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:18:13,657 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:18:14,127 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:18:14,993 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:18:15,659 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:18:18,637 DEBUG chr5: 5582 peaks called 2025-01-31 10:18:18,913 DEBUG chr4: 5707 peaks called 2025-01-31 10:18:19,033 DEBUG chr3: 4440 peaks called 2025-01-31 10:18:19,873 DEBUG chrX: 2458 peaks called 2025-01-31 10:18:21,018 DEBUG chr2: 7156 peaks called 2025-01-31 10:18:21,785 DEBUG chr1: 5764 peaks called 2025-01-31 10:18:25,385 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:18:25,555 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:18:26,027 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:18:26,314 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:18:26,719 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:18:27,616 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:18:29,385 DEBUG chr10: 4319 peaks called 2025-01-31 10:18:29,676 DEBUG chr6: 4452 peaks called 2025-01-31 10:18:30,051 DEBUG chr8: 4284 peaks called 2025-01-31 10:18:30,495 DEBUG chr7: 5653 peaks called 2025-01-31 10:18:30,565 DEBUG chr14: 2855 peaks called 2025-01-31 10:18:31,569 DEBUG chr9: 4956 peaks called 2025-01-31 10:18:35,004 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:18:35,076 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:18:35,315 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:18:35,610 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:18:35,772 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:18:35,974 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:18:37,845 DEBUG chr16: 2943 peaks called 2025-01-31 10:18:38,202 DEBUG chr15: 3545 peaks called 2025-01-31 10:18:38,518 DEBUG chr11: 6807 peaks called 2025-01-31 10:18:38,724 DEBUG chr17: 4001 peaks called 2025-01-31 10:18:38,953 DEBUG chr13: 4300 peaks called 2025-01-31 10:18:39,143 DEBUG chr12: 3258 peaks called 2025-01-31 10:18:40,210 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:18:40,666 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:18:41,850 DEBUG chr19: 3103 peaks called 2025-01-31 10:18:43,015 DEBUG chr18: 2366 peaks called 2025-01-31 10:18:43,335 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:43,370 INFO There are 87949 peaks called at FDR=0.01 2025-01-31 10:18:44,815 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:18:44,816 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:48,429 DEBUG chr5: Calling hotspots 2025-01-31 10:18:48,535 DEBUG chr4: Calling hotspots 2025-01-31 10:18:48,593 DEBUG chrX: Calling hotspots 2025-01-31 10:18:48,712 DEBUG chr2: Calling hotspots 2025-01-31 10:18:48,729 DEBUG chr3: Calling hotspots 2025-01-31 10:18:49,156 DEBUG chr1: Calling hotspots 2025-01-31 10:18:51,970 DEBUG chr5: 3731 hotspots called 2025-01-31 10:18:52,192 DEBUG chr4: 3854 hotspots called 2025-01-31 10:18:52,423 DEBUG chr3: 2910 hotspots called 2025-01-31 10:18:52,462 DEBUG chrX: 1655 hotspots called 2025-01-31 10:18:52,957 DEBUG chr2: 4725 hotspots called 2025-01-31 10:18:53,804 DEBUG chr1: 3791 hotspots called 2025-01-31 10:18:54,753 DEBUG chr8: Calling hotspots 2025-01-31 10:18:54,817 DEBUG chr6: Calling hotspots 2025-01-31 10:18:54,833 DEBUG chr7: Calling hotspots 2025-01-31 10:18:54,909 DEBUG chr10: Calling hotspots 2025-01-31 10:18:55,169 DEBUG chr14: Calling hotspots 2025-01-31 10:18:55,890 DEBUG chr9: Calling hotspots 2025-01-31 10:18:57,912 DEBUG chr8: 2861 hotspots called 2025-01-31 10:18:57,954 DEBUG chr10: 2889 hotspots called 2025-01-31 10:18:57,971 DEBUG chr14: 1894 hotspots called 2025-01-31 10:18:58,160 DEBUG chr7: 3723 hotspots called 2025-01-31 10:18:58,251 DEBUG chr6: 2943 hotspots called 2025-01-31 10:18:59,244 DEBUG chr9: 3272 hotspots called 2025-01-31 10:18:59,794 DEBUG chr16: Calling hotspots 2025-01-31 10:18:59,997 DEBUG chr15: Calling hotspots 2025-01-31 10:19:00,027 DEBUG chr11: Calling hotspots 2025-01-31 10:19:00,164 DEBUG chr13: Calling hotspots 2025-01-31 10:19:00,566 DEBUG chr12: Calling hotspots 2025-01-31 10:19:00,725 DEBUG chr17: Calling hotspots 2025-01-31 10:19:02,010 DEBUG chr16: 1954 hotspots called 2025-01-31 10:19:02,545 DEBUG chr15: 2329 hotspots called 2025-01-31 10:19:02,932 DEBUG chr13: 2776 hotspots called 2025-01-31 10:19:03,013 DEBUG chr17: 2592 hotspots called 2025-01-31 10:19:03,062 DEBUG chr11: 4429 hotspots called 2025-01-31 10:19:03,359 DEBUG chr12: 2205 hotspots called 2025-01-31 10:19:03,446 DEBUG chr18: Calling hotspots 2025-01-31 10:19:03,486 DEBUG chr19: Calling hotspots 2025-01-31 10:19:04,855 DEBUG chr19: 1974 hotspots called 2025-01-31 10:19:05,414 DEBUG chr18: 1580 hotspots called 2025-01-31 10:19:05,615 DEBUG Results of call_hotspots emitted. 2025-01-31 10:19:05,645 INFO There are 58087 hotspots called at FDR=0.001 2025-01-31 10:19:08,306 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:19:08,307 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:19:16,151 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:19:16,306 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:19:16,387 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:19:17,198 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:19:17,372 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:19:17,448 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:19:20,524 DEBUG chr4: 4815 peaks called 2025-01-31 10:19:20,905 DEBUG chr3: 3672 peaks called 2025-01-31 10:19:20,959 DEBUG chr5: 4677 peaks called 2025-01-31 10:19:22,296 DEBUG chrX: 2072 peaks called 2025-01-31 10:19:23,008 DEBUG chr1: 4755 peaks called 2025-01-31 10:19:23,127 DEBUG chr2: 5897 peaks called 2025-01-31 10:19:26,715 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:19:27,232 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:19:27,853 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:19:27,980 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:19:28,344 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:19:28,639 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:19:30,370 DEBUG chr10: 3621 peaks called 2025-01-31 10:19:31,592 DEBUG chr8: 3633 peaks called 2025-01-31 10:19:32,051 DEBUG chr6: 3679 peaks called 2025-01-31 10:19:32,085 DEBUG chr14: 2368 peaks called 2025-01-31 10:19:32,126 DEBUG chr7: 4799 peaks called 2025-01-31 10:19:32,258 DEBUG chr9: 4133 peaks called 2025-01-31 10:19:35,901 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:19:36,418 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:19:36,546 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:19:36,864 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:19:37,125 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:19:37,515 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:19:39,177 DEBUG chr16: 2432 peaks called 2025-01-31 10:19:39,278 DEBUG chr17: 3371 peaks called 2025-01-31 10:19:39,438 DEBUG chr11: 5831 peaks called 2025-01-31 10:19:39,730 DEBUG chr15: 2932 peaks called 2025-01-31 10:19:40,390 DEBUG chr13: 3565 peaks called 2025-01-31 10:19:40,979 DEBUG chr12: 2736 peaks called 2025-01-31 10:19:41,431 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:19:41,935 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:19:43,044 DEBUG chr19: 2598 peaks called 2025-01-31 10:19:44,230 DEBUG chr18: 1937 peaks called 2025-01-31 10:19:44,495 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:19:44,528 INFO There are 73523 peaks called at FDR=0.001 2025-01-31 10:19:45,714 INFO Saving density 2025-01-31 10:19:45,714 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:19:59,614 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:20:04,574 DEBUG Converting density to bigwig 2025-01-31 10:21:07,103 INFO Program finished