2025-01-31 09:31:53,411 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,420 INFO Extracting cutcounts from bam file 2025-01-31 09:34:22,718 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:22,777 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:22,781 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:22,781 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:22,781 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:22,782 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:22,782 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:23,859 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:24,229 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:24,479 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:24,598 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:24,918 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:24,997 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:25,260 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:25,787 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:25,908 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:25,940 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:26,119 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:26,516 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:27,043 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:27,145 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:27,228 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:28,362 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:28,363 INFO Total cutcounts = 26163304 2025-01-31 09:34:28,382 INFO Smoothing signal using MODWT 2025-01-31 09:34:28,384 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:28,444 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,446 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,448 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,448 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,449 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:28,459 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:38,044 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:39,534 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:42,739 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:36:47,432 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:21,273 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:34,090 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:25,211 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:31,309 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:37,799 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:39,472 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:53,510 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:20,512 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:10,681 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:11,453 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:12,830 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:24,577 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:41:24,577 INFO Estimating parameters of background model 2025-01-31 09:41:24,577 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:41:29,588 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:41:29,642 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:41:29,893 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:41:30,319 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:41:30,497 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:41:31,226 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:41:48,511 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:41:48,513 DEBUG chrX: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.029 2025-01-31 09:41:50,177 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:41:50,204 DEBUG chr3: Signal quantile: 0.993. signal threshold: 16. Best RMSEA: 0.017 2025-01-31 09:41:52,877 DEBUG chrX total SNP count: 242710 2025-01-31 09:41:52,878 DEBUG chrX length: 171031299 2025-01-31 09:41:52,878 DEBUG ----------------------------------------- 2025-01-31 09:41:52,878 INFO Processing SNPs in chrX 2025-01-31 09:41:53,177 DEBUG chr3 total SNP count: 267282 2025-01-31 09:41:53,177 DEBUG chr3 length: 160039680 2025-01-31 09:41:53,177 DEBUG ----------------------------------------- 2025-01-31 09:41:53,178 INFO Processing SNPs in chr3 2025-01-31 09:41:53,263 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32769), (32769, 32772), (32772, 32824), (32824, 173330), (173330, 242710)] 2025-01-31 09:41:53,363 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:41:53,376 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:53,408 DEBUG chr4: Signal quantile: 0.991. signal threshold: 18. Best RMSEA: 0.015 2025-01-31 09:41:53,442 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 267282)] 2025-01-31 09:41:53,485 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:41:53,510 DEBUG chr5: Signal quantile: 0.991. signal threshold: 17. Best RMSEA: 0.014 2025-01-31 09:41:53,626 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:56,128 DEBUG chr5 total SNP count: 256160 2025-01-31 09:41:56,128 DEBUG chr5 length: 151834684 2025-01-31 09:41:56,128 DEBUG ----------------------------------------- 2025-01-31 09:41:56,129 INFO Processing SNPs in chr5 2025-01-31 09:41:56,275 DEBUG chr4 total SNP count: 259306 2025-01-31 09:41:56,276 DEBUG chr4 length: 156508116 2025-01-31 09:41:56,276 DEBUG ----------------------------------------- 2025-01-31 09:41:56,276 INFO Processing SNPs in chr4 2025-01-31 09:41:56,390 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 256160)] 2025-01-31 09:41:56,569 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:56,698 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 65206), (65206, 259306)] 2025-01-31 09:41:56,826 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:41:57,325 DEBUG Segmenting atomic regions: 2025-01-31 09:41:57,431 DEBUG Processing 1/108 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:57,578 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:41:57,580 DEBUG chr2: Signal quantile: 0.991. signal threshold: 18. Best RMSEA: 0.015 2025-01-31 09:41:57,597 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:41:57,603 DEBUG chr1: Signal quantile: 0.993. signal threshold: 19. Best RMSEA: 0.016 2025-01-31 09:41:58,458 DEBUG Processing 2/108 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:58,679 DEBUG Processing 3/108 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:58,891 DEBUG Processing 4/108 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:59,105 DEBUG Processing 5/108 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:59,322 DEBUG Processing 6/108 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:59,566 DEBUG Processing 7/108 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 5). 2025-01-31 09:41:59,949 DEBUG Processing 8/108 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:00,168 DEBUG Processing 9/108 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:00,427 DEBUG Processing 10/108 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:00,646 DEBUG Processing 11/108 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:00,899 DEBUG Processing 12/108 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:01,121 DEBUG chr2 total SNP count: 313759 2025-01-31 09:42:01,121 DEBUG chr2 length: 182113224 2025-01-31 09:42:01,121 DEBUG ----------------------------------------- 2025-01-31 09:42:01,121 INFO Processing SNPs in chr2 2025-01-31 09:42:01,180 DEBUG Processing 13/108 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:01,438 DEBUG Processing 14/108 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:01,598 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 305881), (305881, 313759)] 2025-01-31 09:42:01,696 DEBUG Processing 15/108 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:01,744 DEBUG chr1 total SNP count: 339273 2025-01-31 09:42:01,745 DEBUG chr1 length: 195471971 2025-01-31 09:42:01,745 DEBUG ----------------------------------------- 2025-01-31 09:42:01,745 INFO Processing SNPs in chr1 2025-01-31 09:42:01,809 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:01,954 DEBUG Processing 16/108 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:02,082 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 339273)] 2025-01-31 09:42:02,201 DEBUG Processing 17/108 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:02,315 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:02,454 DEBUG Processing 18/108 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:02,682 DEBUG Processing 19/108 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:02,897 DEBUG Processing 20/108 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:03,110 DEBUG Processing 21/108 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:03,330 DEBUG Processing 22/108 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:03,569 DEBUG Processing 23/108 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:03,872 DEBUG Processing 24/108 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:04,092 DEBUG Processing 25/108 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:04,315 DEBUG Processing 26/108 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:04,536 DEBUG Processing 27/108 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:04,753 DEBUG Processing 28/108 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:04,777 DEBUG Segmenting atomic regions: 2025-01-31 09:42:04,889 DEBUG Processing 1/216 atomic regions from SNP 0 to 601 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:04,971 DEBUG Processing 29/108 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,187 DEBUG Processing 30/108 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,401 DEBUG Processing 31/108 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,616 DEBUG Processing 32/108 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,630 DEBUG Processing 2/216 atomic regions from SNP 301 to 902 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:05,835 DEBUG Processing 33/108 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:05,860 DEBUG Processing 3/216 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:06,059 DEBUG Processing 34/108 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,097 DEBUG Processing 4/216 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:06,295 DEBUG Processing 35/108 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,358 DEBUG Processing 5/216 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:06,532 DEBUG Processing 36/108 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,587 DEBUG Processing 6/216 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:06,764 DEBUG Processing 37/108 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:06,815 DEBUG Processing 7/216 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,007 DEBUG Processing 38/108 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:07,035 DEBUG Processing 8/216 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,255 DEBUG Processing 9/216 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,257 DEBUG Processing 39/108 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:07,475 DEBUG Processing 10/216 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,503 DEBUG Processing 40/108 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:07,702 DEBUG Processing 11/216 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,740 DEBUG Processing 41/108 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:07,931 DEBUG Processing 12/216 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:07,981 DEBUG Processing 42/108 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,155 DEBUG Processing 13/216 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:08,216 DEBUG Processing 43/108 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,378 DEBUG Processing 14/216 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:08,457 DEBUG Processing 44/108 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,603 DEBUG Processing 15/216 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:08,698 DEBUG Processing 45/108 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:08,822 DEBUG Processing 16/216 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:08,944 DEBUG Processing 46/108 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,044 DEBUG Processing 17/216 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,174 DEBUG Processing 47/108 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,266 DEBUG Processing 18/216 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,382 DEBUG Processing 48/108 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,486 DEBUG Processing 19/216 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,592 DEBUG Processing 49/108 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,703 DEBUG Processing 20/216 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:09,798 DEBUG Processing 50/108 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:09,927 DEBUG Processing 21/216 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,007 DEBUG Processing 51/108 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,151 DEBUG Processing 22/216 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,212 DEBUG Processing 52/108 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,377 DEBUG Processing 23/216 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,423 DEBUG Processing 53/108 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,602 DEBUG Processing 24/216 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,635 DEBUG Processing 54/108 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:10,832 DEBUG Processing 25/216 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:10,847 DEBUG Processing 55/108 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,058 DEBUG Processing 56/108 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,062 DEBUG Processing 26/216 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,271 DEBUG Processing 57/108 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,291 DEBUG Processing 27/216 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,477 DEBUG Processing 58/108 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,513 DEBUG Processing 28/216 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,684 DEBUG Processing 59/108 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,736 DEBUG Processing 29/216 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:11,895 DEBUG Processing 60/108 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:11,958 DEBUG Processing 30/216 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,107 DEBUG Processing 61/108 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,205 DEBUG Processing 31/216 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,317 DEBUG Processing 62/108 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,444 DEBUG Processing 32/216 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,531 DEBUG Processing 63/108 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,670 DEBUG Processing 33/216 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,744 DEBUG Processing 64/108 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:12,896 DEBUG Processing 34/216 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:12,959 DEBUG Processing 65/108 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,125 DEBUG Processing 35/216 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,174 DEBUG Processing 66/108 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,349 DEBUG Processing 36/216 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,390 DEBUG Processing 67/108 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,574 DEBUG Processing 37/216 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,599 DEBUG Processing 68/108 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:13,804 DEBUG Processing 38/216 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:13,811 DEBUG Processing 69/108 atomic regions from SNP 20468 to 21068 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,020 DEBUG Processing 70/108 atomic regions from SNP 20768 to 21368 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,035 DEBUG Processing 39/216 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,233 DEBUG Processing 71/108 atomic regions from SNP 21068 to 21668 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,268 DEBUG Processing 40/216 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,452 DEBUG Processing 72/108 atomic regions from SNP 21368 to 21968 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,505 DEBUG Processing 41/216 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,679 DEBUG Processing 73/108 atomic regions from SNP 21668 to 22268 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,734 DEBUG Processing 42/216 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:14,903 DEBUG Processing 74/108 atomic regions from SNP 21968 to 22568 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:14,960 DEBUG Processing 43/216 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,118 DEBUG Processing 75/108 atomic regions from SNP 22268 to 22868 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,198 DEBUG Processing 44/216 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,356 DEBUG Processing 76/108 atomic regions from SNP 22568 to 23168 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,497 DEBUG Processing 45/216 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,607 DEBUG Processing 77/108 atomic regions from SNP 22868 to 23468 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:15,822 DEBUG Processing 46/216 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:15,885 DEBUG Processing 78/108 atomic regions from SNP 23168 to 23768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,058 DEBUG Processing 47/216 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,109 DEBUG Processing 79/108 atomic regions from SNP 23468 to 24068 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,288 DEBUG Processing 48/216 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,323 DEBUG Processing 80/108 atomic regions from SNP 23768 to 24368 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,520 DEBUG Processing 49/216 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,537 DEBUG Processing 81/108 atomic regions from SNP 24068 to 24668 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,747 DEBUG Processing 50/216 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:16,752 DEBUG Processing 82/108 atomic regions from SNP 24368 to 24968 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,968 DEBUG Processing 83/108 atomic regions from SNP 24668 to 25268 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:16,973 DEBUG Processing 51/216 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,181 DEBUG Processing 84/108 atomic regions from SNP 24968 to 25568 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,198 DEBUG Processing 52/216 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,397 DEBUG Processing 85/108 atomic regions from SNP 25268 to 25868 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,431 DEBUG Processing 53/216 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,619 DEBUG Processing 86/108 atomic regions from SNP 25568 to 26168 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,670 DEBUG Processing 54/216 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:17,847 DEBUG Processing 87/108 atomic regions from SNP 25868 to 26468 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:17,893 DEBUG Processing 55/216 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,093 DEBUG Processing 88/108 atomic regions from SNP 26168 to 26768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,116 DEBUG Processing 56/216 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,318 DEBUG Processing 89/108 atomic regions from SNP 26468 to 27068 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,347 DEBUG Processing 57/216 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,540 DEBUG Processing 90/108 atomic regions from SNP 26768 to 27368 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,571 DEBUG Processing 58/216 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,759 DEBUG Processing 91/108 atomic regions from SNP 27068 to 27668 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:18,790 DEBUG Processing 59/216 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:18,975 DEBUG Processing 92/108 atomic regions from SNP 27368 to 27968 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,013 DEBUG Processing 60/216 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,192 DEBUG Processing 93/108 atomic regions from SNP 27668 to 28268 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,268 DEBUG Processing 61/216 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,406 DEBUG Processing 94/108 atomic regions from SNP 27968 to 28568 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,491 DEBUG Processing 62/216 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,617 DEBUG Processing 95/108 atomic regions from SNP 28268 to 28868 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,719 DEBUG Processing 63/216 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:19,830 DEBUG Processing 96/108 atomic regions from SNP 28568 to 29168 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:19,948 DEBUG Processing 64/216 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,043 DEBUG Processing 97/108 atomic regions from SNP 28868 to 29468 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,180 DEBUG Processing 65/216 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,257 DEBUG Processing 98/108 atomic regions from SNP 29168 to 29768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,408 DEBUG Processing 66/216 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,474 DEBUG Processing 99/108 atomic regions from SNP 29468 to 30068 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,635 DEBUG Processing 67/216 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,690 DEBUG Processing 100/108 atomic regions from SNP 29768 to 30368 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:20,863 DEBUG Processing 68/216 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:20,903 DEBUG Processing 101/108 atomic regions from SNP 30068 to 30668 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,089 DEBUG Processing 69/216 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,118 DEBUG Processing 102/108 atomic regions from SNP 30368 to 30968 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,320 DEBUG Processing 70/216 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,336 DEBUG Processing 103/108 atomic regions from SNP 30668 to 31268 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,549 DEBUG Processing 71/216 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,549 DEBUG Processing 104/108 atomic regions from SNP 30968 to 31568 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,760 DEBUG Processing 105/108 atomic regions from SNP 31268 to 31868 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:21,777 DEBUG Processing 72/216 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:21,970 DEBUG Processing 106/108 atomic regions from SNP 31568 to 32168 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,001 DEBUG Processing 73/216 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,183 DEBUG Processing 107/108 atomic regions from SNP 31868 to 32468 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,223 DEBUG Processing 74/216 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,399 DEBUG Processing 108/108 atomic regions from SNP 32168 to 32768 for chrX (subchromosome 1 of 5). 2025-01-31 09:42:22,445 DEBUG Processing 75/216 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,510 DEBUG Unique SNPs positions in subchromosome 1: 32769 2025-01-31 09:42:22,569 DEBUG Subchromosome time: 29.192130540963262, subchromosome SNPs: 32769 2025-01-31 09:42:22,603 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:22,665 DEBUG Processing 76/216 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:22,883 DEBUG Processing 77/216 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,107 DEBUG Processing 78/216 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,333 DEBUG Processing 79/216 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,554 DEBUG Processing 80/216 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,768 DEBUG Processing 81/216 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:23,987 DEBUG Processing 82/216 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,209 DEBUG Processing 83/216 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,438 DEBUG Processing 84/216 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,668 DEBUG Processing 85/216 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:24,898 DEBUG Processing 86/216 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,129 DEBUG Processing 87/216 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,354 DEBUG Processing 88/216 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,579 DEBUG Processing 89/216 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:25,673 DEBUG Segmenting atomic regions: 2025-01-31 09:42:25,787 DEBUG Processing 1/889 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:25,802 DEBUG Processing 90/216 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,029 DEBUG Processing 91/216 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,253 DEBUG Processing 92/216 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,478 DEBUG Processing 93/216 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,504 DEBUG Processing 2/889 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,705 DEBUG Processing 94/216 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,721 DEBUG Processing 3/889 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:26,934 DEBUG Processing 95/216 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:26,938 DEBUG Processing 4/889 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,156 DEBUG Processing 5/889 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,161 DEBUG Processing 96/216 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,215 DEBUG Segmenting atomic regions: 2025-01-31 09:42:27,327 DEBUG Processing 1/852 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:27,378 DEBUG Processing 6/889 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,385 DEBUG Processing 97/216 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,606 DEBUG Processing 7/889 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,613 DEBUG Processing 98/216 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:27,837 DEBUG Processing 8/889 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:27,845 DEBUG Processing 99/216 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,068 DEBUG Processing 2/852 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,070 DEBUG Processing 9/889 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,074 DEBUG Processing 100/216 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,296 DEBUG Processing 3/852 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,301 DEBUG Processing 101/216 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,302 DEBUG Processing 10/889 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,526 DEBUG Processing 4/852 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,528 DEBUG Processing 102/216 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,530 DEBUG Processing 11/889 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,746 DEBUG Processing 5/852 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,752 DEBUG Processing 103/216 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,758 DEBUG Processing 12/889 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:28,969 DEBUG Processing 6/852 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:28,976 DEBUG Processing 104/216 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:28,986 DEBUG Processing 13/889 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,189 DEBUG Processing 7/852 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,207 DEBUG Processing 14/889 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,210 DEBUG Processing 105/216 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,409 DEBUG Processing 8/852 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,428 DEBUG Processing 15/889 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,429 DEBUG Processing 106/216 atomic regions from SNP 31605 to 32205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,632 DEBUG Processing 9/852 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,648 DEBUG Processing 107/216 atomic regions from SNP 31905 to 32505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,653 DEBUG Processing 16/889 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:29,852 DEBUG Processing 10/852 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:29,872 DEBUG Processing 108/216 atomic regions from SNP 32205 to 32805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:29,873 DEBUG Processing 17/889 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,070 DEBUG Processing 11/852 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,095 DEBUG Processing 18/889 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,103 DEBUG Processing 109/216 atomic regions from SNP 32505 to 33105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,286 DEBUG Processing 12/852 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,315 DEBUG Processing 19/889 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,338 DEBUG Processing 110/216 atomic regions from SNP 32805 to 33405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,500 DEBUG Processing 13/852 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,533 DEBUG Processing 20/889 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,566 DEBUG Processing 111/216 atomic regions from SNP 33105 to 33705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,713 DEBUG Processing 14/852 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,744 DEBUG Processing 21/889 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:30,787 DEBUG Processing 112/216 atomic regions from SNP 33405 to 34005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:30,933 DEBUG Processing 15/852 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:30,962 DEBUG Processing 22/889 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,006 DEBUG Processing 113/216 atomic regions from SNP 33705 to 34305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,157 DEBUG Processing 16/852 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,182 DEBUG Processing 23/889 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,224 DEBUG Processing 114/216 atomic regions from SNP 34005 to 34605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,379 DEBUG Processing 17/852 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,404 DEBUG Processing 24/889 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,441 DEBUG Processing 115/216 atomic regions from SNP 34305 to 34905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,596 DEBUG Processing 18/852 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,624 DEBUG Processing 25/889 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,661 DEBUG Processing 116/216 atomic regions from SNP 34605 to 35205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:31,811 DEBUG Processing 19/852 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:31,845 DEBUG Processing 26/889 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:31,885 DEBUG Processing 117/216 atomic regions from SNP 34905 to 35505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,029 DEBUG Processing 20/852 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,064 DEBUG Processing 27/889 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,106 DEBUG Processing 118/216 atomic regions from SNP 35205 to 35805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,248 DEBUG Processing 21/852 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,288 DEBUG Processing 28/889 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,328 DEBUG Processing 119/216 atomic regions from SNP 35505 to 36105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,469 DEBUG Processing 22/852 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,512 DEBUG Processing 29/889 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,553 DEBUG Processing 120/216 atomic regions from SNP 35805 to 36405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,689 DEBUG Processing 23/852 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,737 DEBUG Processing 30/889 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:32,777 DEBUG Processing 121/216 atomic regions from SNP 36105 to 36705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:32,906 DEBUG Processing 24/852 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:32,959 DEBUG Processing 31/889 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,001 DEBUG Processing 122/216 atomic regions from SNP 36405 to 37005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,122 DEBUG Processing 25/852 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,183 DEBUG Processing 32/889 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,223 DEBUG Processing 123/216 atomic regions from SNP 36705 to 37305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,338 DEBUG Processing 26/852 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,412 DEBUG Processing 33/889 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,446 DEBUG Processing 124/216 atomic regions from SNP 37005 to 37605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,553 DEBUG Processing 27/852 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,628 DEBUG Processing 34/889 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,662 DEBUG Processing 125/216 atomic regions from SNP 37305 to 37905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,767 DEBUG Processing 28/852 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:33,848 DEBUG Processing 35/889 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:33,880 DEBUG Processing 126/216 atomic regions from SNP 37605 to 38205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:33,981 DEBUG Processing 29/852 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,067 DEBUG Processing 36/889 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,100 DEBUG Processing 127/216 atomic regions from SNP 37905 to 38505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,196 DEBUG Processing 30/852 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,288 DEBUG Processing 37/889 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,332 DEBUG Processing 128/216 atomic regions from SNP 38205 to 38805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,414 DEBUG Processing 31/852 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,511 DEBUG Processing 38/889 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,556 DEBUG Processing 129/216 atomic regions from SNP 38505 to 39105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,627 DEBUG Processing 32/852 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,734 DEBUG Processing 39/889 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,777 DEBUG Processing 130/216 atomic regions from SNP 38805 to 39405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:34,840 DEBUG Processing 33/852 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:34,962 DEBUG Processing 40/889 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:34,999 DEBUG Processing 131/216 atomic regions from SNP 39105 to 39705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,051 DEBUG Processing 34/852 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,204 DEBUG Processing 41/889 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,221 DEBUG Processing 132/216 atomic regions from SNP 39405 to 40005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,266 DEBUG Processing 35/852 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,431 DEBUG Processing 42/889 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,445 DEBUG Processing 133/216 atomic regions from SNP 39705 to 40305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,485 DEBUG Processing 36/852 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,654 DEBUG Processing 43/889 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,665 DEBUG Processing 134/216 atomic regions from SNP 40005 to 40605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,706 DEBUG Processing 37/852 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:35,877 DEBUG Processing 44/889 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:35,882 DEBUG Processing 135/216 atomic regions from SNP 40305 to 40905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:35,934 DEBUG Processing 38/852 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,096 DEBUG Processing 45/889 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,100 DEBUG Processing 136/216 atomic regions from SNP 40605 to 41205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,154 DEBUG Processing 39/852 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,315 DEBUG Processing 46/889 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,319 DEBUG Processing 137/216 atomic regions from SNP 40905 to 41505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,373 DEBUG Processing 40/852 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,531 DEBUG Processing 47/889 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,540 DEBUG Processing 138/216 atomic regions from SNP 41205 to 41805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,587 DEBUG Processing 41/852 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,747 DEBUG Processing 48/889 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,761 DEBUG Processing 139/216 atomic regions from SNP 41505 to 42105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:36,797 DEBUG Processing 42/852 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:36,964 DEBUG Processing 49/889 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:36,990 DEBUG Processing 140/216 atomic regions from SNP 41805 to 42405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,012 DEBUG Processing 43/852 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,180 DEBUG Processing 50/889 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,213 DEBUG Processing 141/216 atomic regions from SNP 42105 to 42705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,228 DEBUG Processing 44/852 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,394 DEBUG Processing 51/889 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,442 DEBUG Processing 142/216 atomic regions from SNP 42405 to 43005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,453 DEBUG Processing 45/852 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,610 DEBUG Processing 52/889 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,659 DEBUG Processing 143/216 atomic regions from SNP 42705 to 43305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:37,667 DEBUG Processing 46/852 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,829 DEBUG Processing 53/889 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:37,885 DEBUG Processing 47/852 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:37,886 DEBUG Processing 144/216 atomic regions from SNP 43005 to 43605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,046 DEBUG Processing 54/889 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,099 DEBUG Processing 48/852 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,104 DEBUG Processing 145/216 atomic regions from SNP 43305 to 43905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,206 DEBUG Segmenting atomic regions: 2025-01-31 09:42:38,264 DEBUG Processing 55/889 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,315 DEBUG Processing 49/852 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,327 DEBUG Processing 146/216 atomic regions from SNP 43605 to 44205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,343 DEBUG Processing 1/1018 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:38,486 DEBUG Processing 56/889 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,535 DEBUG Processing 50/852 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,551 DEBUG Processing 147/216 atomic regions from SNP 43905 to 44505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,707 DEBUG Processing 57/889 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,759 DEBUG Processing 51/852 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,774 DEBUG Processing 148/216 atomic regions from SNP 44205 to 44805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:38,925 DEBUG Processing 58/889 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:38,975 DEBUG Processing 52/852 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:38,996 DEBUG Processing 149/216 atomic regions from SNP 44505 to 45105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,092 DEBUG Processing 2/1018 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,145 DEBUG Processing 59/889 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,197 DEBUG Processing 53/852 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,217 DEBUG Processing 150/216 atomic regions from SNP 44805 to 45405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,308 DEBUG Segmenting atomic regions: 2025-01-31 09:42:39,343 DEBUG Processing 3/1018 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,361 DEBUG Processing 60/889 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,412 DEBUG Processing 54/852 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,413 DEBUG Processing 1/467 atomic regions from SNP 0 to 601 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,441 DEBUG Processing 151/216 atomic regions from SNP 45105 to 45705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,581 DEBUG Processing 61/889 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,586 DEBUG Processing 4/1018 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,628 DEBUG Processing 2/467 atomic regions from SNP 301 to 902 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,630 DEBUG Processing 55/852 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,667 DEBUG Processing 152/216 atomic regions from SNP 45405 to 46005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:39,803 DEBUG Processing 62/889 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:39,832 DEBUG Processing 5/1018 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:39,838 DEBUG Processing 3/467 atomic regions from SNP 602 to 1203 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:39,849 DEBUG Processing 56/852 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:39,893 DEBUG Processing 153/216 atomic regions from SNP 45705 to 46305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,027 DEBUG Processing 63/889 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,050 DEBUG Processing 4/467 atomic regions from SNP 903 to 1504 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,068 DEBUG Processing 57/852 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,080 DEBUG Processing 6/1018 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,118 DEBUG Processing 154/216 atomic regions from SNP 46005 to 46605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,246 DEBUG Processing 64/889 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,261 DEBUG Processing 5/467 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,286 DEBUG Processing 58/852 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,325 DEBUG Processing 7/1018 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,342 DEBUG Processing 155/216 atomic regions from SNP 46305 to 46905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,475 DEBUG Processing 65/889 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,477 DEBUG Processing 6/467 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,507 DEBUG Processing 59/852 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,565 DEBUG Processing 156/216 atomic regions from SNP 46605 to 47205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,573 DEBUG Processing 8/1018 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,697 DEBUG Processing 7/467 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,706 DEBUG Processing 66/889 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,729 DEBUG Processing 60/852 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:40,782 DEBUG Processing 157/216 atomic regions from SNP 46905 to 47505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:40,815 DEBUG Processing 9/1018 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:40,921 DEBUG Processing 8/467 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:40,934 DEBUG Processing 67/889 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:40,949 DEBUG Processing 61/852 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,001 DEBUG Processing 158/216 atomic regions from SNP 47205 to 47805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,056 DEBUG Processing 10/1018 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,153 DEBUG Processing 9/467 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,161 DEBUG Processing 68/889 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,173 DEBUG Processing 62/852 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,221 DEBUG Processing 159/216 atomic regions from SNP 47505 to 48105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,296 DEBUG Processing 11/1018 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,388 DEBUG Processing 69/889 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,398 DEBUG Processing 63/852 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,401 DEBUG Processing 10/467 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,451 DEBUG Processing 160/216 atomic regions from SNP 47805 to 48405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,551 DEBUG Processing 12/1018 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,612 DEBUG Processing 70/889 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,618 DEBUG Processing 64/852 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,643 DEBUG Processing 11/467 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,678 DEBUG Processing 161/216 atomic regions from SNP 48105 to 48705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:41,798 DEBUG Processing 13/1018 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:41,838 DEBUG Processing 71/889 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:41,840 DEBUG Processing 65/852 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:41,880 DEBUG Processing 12/467 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:41,905 DEBUG Processing 162/216 atomic regions from SNP 48405 to 49005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,048 DEBUG Processing 14/1018 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,061 DEBUG Processing 66/852 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,062 DEBUG Processing 72/889 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,113 DEBUG Processing 13/467 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,134 DEBUG Processing 163/216 atomic regions from SNP 48705 to 49305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,284 DEBUG Processing 67/852 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,288 DEBUG Processing 73/889 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,298 DEBUG Processing 15/1018 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,337 DEBUG Processing 14/467 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,361 DEBUG Processing 164/216 atomic regions from SNP 49005 to 49605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,474 DEBUG Segmenting atomic regions: 2025-01-31 09:42:42,506 DEBUG Processing 68/852 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,513 DEBUG Processing 74/889 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,550 DEBUG Processing 16/1018 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,555 DEBUG Processing 15/467 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,586 DEBUG Processing 165/216 atomic regions from SNP 49305 to 49905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,615 DEBUG Processing 1/1129 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:42,727 DEBUG Processing 69/852 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,741 DEBUG Processing 75/889 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:42,780 DEBUG Processing 16/467 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:42,807 DEBUG Processing 17/1018 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:42,819 DEBUG Processing 166/216 atomic regions from SNP 49605 to 50205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:42,951 DEBUG Processing 70/852 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:42,970 DEBUG Processing 76/889 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,009 DEBUG Processing 17/467 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,054 DEBUG Processing 167/216 atomic regions from SNP 49905 to 50505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,071 DEBUG Processing 18/1018 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,175 DEBUG Processing 71/852 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,197 DEBUG Processing 77/889 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,240 DEBUG Processing 18/467 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,297 DEBUG Processing 168/216 atomic regions from SNP 50205 to 50805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,333 DEBUG Processing 19/1018 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,388 DEBUG Processing 2/1129 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,399 DEBUG Processing 72/852 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,423 DEBUG Processing 78/889 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,452 DEBUG Processing 19/467 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,550 DEBUG Processing 169/216 atomic regions from SNP 50505 to 51105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,602 DEBUG Processing 20/1018 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,627 DEBUG Processing 73/852 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,652 DEBUG Processing 79/889 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,667 DEBUG Processing 20/467 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,668 DEBUG Processing 3/1129 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:43,795 DEBUG Processing 170/216 atomic regions from SNP 50805 to 51405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:43,854 DEBUG Processing 74/852 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:43,876 DEBUG Processing 21/1018 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:43,885 DEBUG Processing 80/889 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:43,889 DEBUG Processing 21/467 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:43,938 DEBUG Processing 4/1129 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,024 DEBUG Processing 171/216 atomic regions from SNP 51105 to 51705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,085 DEBUG Processing 75/852 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,116 DEBUG Processing 22/467 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,122 DEBUG Processing 81/889 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,142 DEBUG Processing 22/1018 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,199 DEBUG Processing 5/1129 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,247 DEBUG Processing 172/216 atomic regions from SNP 51405 to 52005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,304 DEBUG Processing 76/852 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,337 DEBUG Processing 23/467 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,355 DEBUG Processing 82/889 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,399 DEBUG Processing 23/1018 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,459 DEBUG Processing 6/1129 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,474 DEBUG Processing 173/216 atomic regions from SNP 51705 to 52305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,523 DEBUG Processing 77/852 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,549 DEBUG Processing 24/467 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,581 DEBUG Processing 83/889 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,651 DEBUG Processing 24/1018 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,703 DEBUG Processing 174/216 atomic regions from SNP 52005 to 52605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,719 DEBUG Processing 7/1129 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:44,739 DEBUG Processing 78/852 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,760 DEBUG Processing 25/467 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,804 DEBUG Processing 84/889 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:44,904 DEBUG Processing 25/1018 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:44,929 DEBUG Processing 175/216 atomic regions from SNP 52305 to 52905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:44,959 DEBUG Processing 79/852 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:44,969 DEBUG Processing 26/467 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:44,978 DEBUG Processing 8/1129 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,023 DEBUG Processing 85/889 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,156 DEBUG Processing 26/1018 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,158 DEBUG Processing 176/216 atomic regions from SNP 52605 to 53205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,185 DEBUG Processing 80/852 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,187 DEBUG Processing 27/467 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,237 DEBUG Processing 9/1129 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,244 DEBUG Processing 86/889 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,386 DEBUG Processing 177/216 atomic regions from SNP 52905 to 53505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,410 DEBUG Processing 28/467 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,412 DEBUG Processing 27/1018 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,414 DEBUG Processing 81/852 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,483 DEBUG Processing 87/889 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,499 DEBUG Processing 10/1129 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,617 DEBUG Processing 178/216 atomic regions from SNP 53205 to 53805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,633 DEBUG Processing 29/467 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,642 DEBUG Processing 82/852 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,670 DEBUG Processing 28/1018 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,738 DEBUG Processing 88/889 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:45,763 DEBUG Processing 11/1129 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:45,848 DEBUG Processing 179/216 atomic regions from SNP 53505 to 54105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:45,850 DEBUG Processing 30/467 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:45,866 DEBUG Processing 83/852 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:45,923 DEBUG Processing 29/1018 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:45,962 DEBUG Processing 89/889 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,018 DEBUG Processing 12/1129 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,064 DEBUG Processing 31/467 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,081 DEBUG Processing 180/216 atomic regions from SNP 53805 to 54405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,092 DEBUG Processing 84/852 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,179 DEBUG Processing 30/1018 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,212 DEBUG Processing 90/889 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,271 DEBUG Processing 13/1129 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,276 DEBUG Processing 32/467 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,312 DEBUG Processing 181/216 atomic regions from SNP 54105 to 54705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,314 DEBUG Processing 85/852 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,434 DEBUG Processing 31/1018 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,465 DEBUG Processing 91/889 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,487 DEBUG Processing 33/467 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,526 DEBUG Processing 14/1129 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,531 DEBUG Processing 86/852 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,536 DEBUG Processing 182/216 atomic regions from SNP 54405 to 55005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,687 DEBUG Processing 32/1018 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,694 DEBUG Processing 92/889 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,705 DEBUG Processing 34/467 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,751 DEBUG Processing 87/852 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,759 DEBUG Processing 183/216 atomic regions from SNP 54705 to 55305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:46,783 DEBUG Processing 15/1129 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:46,924 DEBUG Processing 35/467 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:46,927 DEBUG Processing 93/889 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:46,937 DEBUG Processing 33/1018 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:46,971 DEBUG Processing 88/852 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:46,982 DEBUG Processing 184/216 atomic regions from SNP 55005 to 55605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,033 DEBUG Processing 16/1129 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,147 DEBUG Processing 36/467 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,159 DEBUG Processing 94/889 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,192 DEBUG Processing 34/1018 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,197 DEBUG Processing 89/852 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,206 DEBUG Processing 185/216 atomic regions from SNP 55305 to 55905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,281 DEBUG Processing 17/1129 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,384 DEBUG Processing 37/467 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,387 DEBUG Processing 95/889 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,426 DEBUG Processing 90/852 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,433 DEBUG Processing 186/216 atomic regions from SNP 55605 to 56205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,448 DEBUG Processing 35/1018 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,535 DEBUG Processing 18/1129 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,602 DEBUG Processing 38/467 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,615 DEBUG Processing 96/889 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,663 DEBUG Processing 91/852 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,663 DEBUG Processing 187/216 atomic regions from SNP 55905 to 56505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,703 DEBUG Processing 36/1018 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:47,791 DEBUG Processing 19/1129 atomic regions from SNP 5418 to 6019 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:47,817 DEBUG Processing 39/467 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:47,841 DEBUG Processing 97/889 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:47,891 DEBUG Processing 188/216 atomic regions from SNP 56205 to 56805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:47,913 DEBUG Processing 92/852 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:47,957 DEBUG Processing 37/1018 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,033 DEBUG Processing 40/467 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,059 DEBUG Processing 20/1129 atomic regions from SNP 5719 to 6320 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,065 DEBUG Processing 98/889 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,117 DEBUG Processing 189/216 atomic regions from SNP 56505 to 57105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,141 DEBUG Processing 93/852 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,206 DEBUG Processing 38/1018 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,249 DEBUG Processing 41/467 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,289 DEBUG Processing 99/889 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,325 DEBUG Processing 21/1129 atomic regions from SNP 6020 to 6621 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,346 DEBUG Processing 190/216 atomic regions from SNP 56805 to 57405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,366 DEBUG Processing 94/852 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,457 DEBUG Processing 39/1018 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,467 DEBUG Processing 42/467 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,518 DEBUG Processing 100/889 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,578 DEBUG Processing 191/216 atomic regions from SNP 57105 to 57705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,589 DEBUG Processing 95/852 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,591 DEBUG Processing 22/1129 atomic regions from SNP 6321 to 6922 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,682 DEBUG Processing 43/467 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,706 DEBUG Processing 40/1018 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,744 DEBUG Processing 101/889 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:48,809 DEBUG Processing 192/216 atomic regions from SNP 57405 to 58005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:48,813 DEBUG Processing 96/852 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:48,855 DEBUG Processing 23/1129 atomic regions from SNP 6622 to 7223 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:48,894 DEBUG Processing 44/467 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:48,952 DEBUG Processing 41/1018 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:48,966 DEBUG Processing 102/889 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,043 DEBUG Processing 193/216 atomic regions from SNP 57705 to 58305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,052 DEBUG Processing 97/852 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,109 DEBUG Processing 45/467 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,118 DEBUG Processing 24/1129 atomic regions from SNP 6923 to 7524 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,188 DEBUG Processing 103/889 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,192 DEBUG Processing 42/1018 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,279 DEBUG Processing 98/852 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,281 DEBUG Processing 194/216 atomic regions from SNP 58005 to 58605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,328 DEBUG Processing 46/467 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,380 DEBUG Processing 25/1129 atomic regions from SNP 7224 to 7825 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,409 DEBUG Processing 104/889 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,435 DEBUG Processing 43/1018 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,504 DEBUG Processing 99/852 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,518 DEBUG Processing 195/216 atomic regions from SNP 58305 to 58905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,550 DEBUG Processing 47/467 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,630 DEBUG Processing 105/889 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,640 DEBUG Processing 26/1129 atomic regions from SNP 7525 to 8126 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,675 DEBUG Processing 44/1018 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,746 DEBUG Processing 100/852 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:49,751 DEBUG Processing 196/216 atomic regions from SNP 58605 to 59205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,763 DEBUG Processing 48/467 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,856 DEBUG Processing 106/889 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:49,898 DEBUG Processing 27/1129 atomic regions from SNP 7826 to 8427 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:49,919 DEBUG Processing 45/1018 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:49,975 DEBUG Processing 49/467 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:49,985 DEBUG Processing 197/216 atomic regions from SNP 58905 to 59505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:49,995 DEBUG Processing 101/852 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,081 DEBUG Processing 107/889 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,158 DEBUG Processing 28/1129 atomic regions from SNP 8127 to 8728 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,164 DEBUG Processing 46/1018 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,187 DEBUG Processing 50/467 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,215 DEBUG Processing 102/852 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,221 DEBUG Processing 198/216 atomic regions from SNP 59205 to 59805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,308 DEBUG Processing 108/889 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,402 DEBUG Processing 51/467 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,412 DEBUG Processing 47/1018 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,423 DEBUG Processing 29/1129 atomic regions from SNP 8428 to 9029 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,435 DEBUG Processing 103/852 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,458 DEBUG Processing 199/216 atomic regions from SNP 59505 to 60105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,532 DEBUG Processing 109/889 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,616 DEBUG Processing 52/467 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,654 DEBUG Processing 104/852 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,656 DEBUG Processing 48/1018 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,688 DEBUG Processing 30/1129 atomic regions from SNP 8729 to 9330 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,694 DEBUG Processing 200/216 atomic regions from SNP 59805 to 60405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,753 DEBUG Processing 110/889 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:50,831 DEBUG Processing 53/467 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:50,873 DEBUG Processing 105/852 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:50,903 DEBUG Processing 49/1018 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:50,932 DEBUG Processing 201/216 atomic regions from SNP 60105 to 60705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:50,955 DEBUG Processing 31/1129 atomic regions from SNP 9030 to 9631 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:50,977 DEBUG Processing 111/889 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,044 DEBUG Processing 54/467 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,109 DEBUG Processing 106/852 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,151 DEBUG Processing 50/1018 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,175 DEBUG Processing 202/216 atomic regions from SNP 60405 to 61005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,205 DEBUG Processing 112/889 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,231 DEBUG Processing 32/1129 atomic regions from SNP 9331 to 9932 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,260 DEBUG Processing 55/467 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,362 DEBUG Processing 107/852 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,404 DEBUG Processing 51/1018 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,415 DEBUG Processing 203/216 atomic regions from SNP 60705 to 61305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,432 DEBUG Processing 113/889 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,475 DEBUG Processing 56/467 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,504 DEBUG Processing 33/1129 atomic regions from SNP 9632 to 10233 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,598 DEBUG Processing 108/852 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,645 DEBUG Processing 204/216 atomic regions from SNP 61005 to 61605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,660 DEBUG Processing 52/1018 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:51,662 DEBUG Processing 114/889 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,692 DEBUG Processing 57/467 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,765 DEBUG Processing 34/1129 atomic regions from SNP 9933 to 10534 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:51,842 DEBUG Processing 109/852 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:51,874 DEBUG Processing 205/216 atomic regions from SNP 61305 to 61905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:51,896 DEBUG Processing 115/889 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:51,918 DEBUG Processing 58/467 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:51,919 DEBUG Processing 53/1018 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,028 DEBUG Processing 35/1129 atomic regions from SNP 10234 to 10835 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,066 DEBUG Processing 110/852 atomic regions from SNP 32809 to 33410 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,101 DEBUG Processing 206/216 atomic regions from SNP 61605 to 62205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,128 DEBUG Processing 116/889 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,141 DEBUG Processing 59/467 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,174 DEBUG Processing 54/1018 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,290 DEBUG Processing 111/852 atomic regions from SNP 33110 to 33711 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,293 DEBUG Processing 36/1129 atomic regions from SNP 10535 to 11136 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,328 DEBUG Processing 207/216 atomic regions from SNP 61905 to 62505 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,360 DEBUG Processing 117/889 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,362 DEBUG Processing 60/467 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,426 DEBUG Processing 55/1018 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,545 DEBUG Processing 112/852 atomic regions from SNP 33411 to 34012 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,558 DEBUG Processing 37/1129 atomic regions from SNP 10836 to 11437 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,571 DEBUG Processing 208/216 atomic regions from SNP 62205 to 62805 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,583 DEBUG Processing 61/467 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,590 DEBUG Processing 118/889 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,674 DEBUG Processing 56/1018 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:52,805 DEBUG Processing 62/467 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:52,810 DEBUG Processing 113/852 atomic regions from SNP 33712 to 34313 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:52,822 DEBUG Processing 209/216 atomic regions from SNP 62505 to 63105 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:52,824 DEBUG Processing 119/889 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:52,844 DEBUG Processing 38/1129 atomic regions from SNP 11137 to 11738 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:52,924 DEBUG Processing 57/1018 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,028 DEBUG Processing 63/467 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,058 DEBUG Processing 120/889 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,064 DEBUG Processing 210/216 atomic regions from SNP 62805 to 63405 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,070 DEBUG Processing 114/852 atomic regions from SNP 34013 to 34614 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,129 DEBUG Processing 39/1129 atomic regions from SNP 11438 to 12039 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,173 DEBUG Processing 58/1018 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,247 DEBUG Processing 64/467 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,291 DEBUG Processing 121/889 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,313 DEBUG Processing 211/216 atomic regions from SNP 63105 to 63705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,331 DEBUG Processing 115/852 atomic regions from SNP 34314 to 34915 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,406 DEBUG Processing 40/1129 atomic regions from SNP 11739 to 12340 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,419 DEBUG Processing 59/1018 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,460 DEBUG Processing 65/467 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,519 DEBUG Processing 122/889 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,568 DEBUG Processing 212/216 atomic regions from SNP 63405 to 64005 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,598 DEBUG Processing 116/852 atomic regions from SNP 34615 to 35216 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,670 DEBUG Processing 60/1018 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,671 DEBUG Processing 41/1129 atomic regions from SNP 12040 to 12641 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,672 DEBUG Processing 66/467 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,743 DEBUG Processing 123/889 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:53,831 DEBUG Processing 213/216 atomic regions from SNP 63705 to 64305 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:53,843 DEBUG Processing 117/852 atomic regions from SNP 34916 to 35517 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:53,891 DEBUG Processing 67/467 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:53,922 DEBUG Processing 61/1018 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:53,939 DEBUG Processing 42/1129 atomic regions from SNP 12341 to 12942 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:53,966 DEBUG Processing 124/889 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,068 DEBUG Processing 118/852 atomic regions from SNP 35217 to 35818 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,097 DEBUG Processing 214/216 atomic regions from SNP 64005 to 64605 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,108 DEBUG Processing 68/467 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,175 DEBUG Processing 62/1018 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,195 DEBUG Processing 125/889 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,208 DEBUG Processing 43/1129 atomic regions from SNP 12642 to 13243 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,307 DEBUG Processing 119/852 atomic regions from SNP 35518 to 36119 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,337 DEBUG Processing 69/467 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,350 DEBUG Processing 215/216 atomic regions from SNP 64305 to 64905 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,425 DEBUG Processing 126/889 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,427 DEBUG Processing 63/1018 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,471 DEBUG Processing 44/1129 atomic regions from SNP 12943 to 13544 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,551 DEBUG Processing 120/852 atomic regions from SNP 35819 to 36420 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,572 DEBUG Processing 70/467 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,605 DEBUG Processing 216/216 atomic regions from SNP 64605 to 65205 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,656 DEBUG Processing 127/889 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,679 DEBUG Processing 64/1018 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,731 DEBUG Processing 45/1129 atomic regions from SNP 13244 to 13845 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,759 DEBUG Unique SNPs positions in subchromosome 1: 65206 2025-01-31 09:42:54,771 DEBUG Processing 121/852 atomic regions from SNP 36120 to 36721 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:54,816 DEBUG Processing 71/467 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:54,885 DEBUG Processing 128/889 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:54,935 DEBUG Processing 65/1018 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:54,956 DEBUG Subchromosome time: 58.129953177063726, subchromosome SNPs: 65206 2025-01-31 09:42:54,992 DEBUG Processing 46/1129 atomic regions from SNP 13545 to 14146 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:54,994 DEBUG Processing 122/852 atomic regions from SNP 36421 to 37022 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,005 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:55,046 DEBUG Processing 72/467 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,111 DEBUG Processing 129/889 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,191 DEBUG Processing 66/1018 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,223 DEBUG Processing 123/852 atomic regions from SNP 36722 to 37323 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,250 DEBUG Processing 47/1129 atomic regions from SNP 13846 to 14447 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,263 DEBUG Processing 73/467 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,333 DEBUG Processing 130/889 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,450 DEBUG Processing 124/852 atomic regions from SNP 37023 to 37624 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,451 DEBUG Processing 67/1018 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,486 DEBUG Processing 74/467 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,509 DEBUG Processing 48/1129 atomic regions from SNP 14147 to 14748 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,556 DEBUG Processing 131/889 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,672 DEBUG Processing 125/852 atomic regions from SNP 37324 to 37925 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,703 DEBUG Processing 68/1018 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:55,708 DEBUG Processing 75/467 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,767 DEBUG Processing 49/1129 atomic regions from SNP 14448 to 15049 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:55,784 DEBUG Processing 132/889 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:55,895 DEBUG Processing 126/852 atomic regions from SNP 37625 to 38226 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:55,926 DEBUG Processing 76/467 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:55,955 DEBUG Processing 69/1018 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,012 DEBUG Processing 133/889 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,029 DEBUG Processing 50/1129 atomic regions from SNP 14749 to 15350 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,119 DEBUG Processing 127/852 atomic regions from SNP 37926 to 38527 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,142 DEBUG Processing 77/467 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,203 DEBUG Processing 70/1018 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,242 DEBUG Processing 134/889 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,292 DEBUG Processing 51/1129 atomic regions from SNP 15050 to 15651 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,346 DEBUG Processing 128/852 atomic regions from SNP 38227 to 38828 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,359 DEBUG Processing 78/467 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,449 DEBUG Processing 71/1018 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,469 DEBUG Processing 135/889 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,557 DEBUG Processing 52/1129 atomic regions from SNP 15351 to 15952 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,573 DEBUG Processing 129/852 atomic regions from SNP 38528 to 39129 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,580 DEBUG Processing 79/467 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,692 DEBUG Processing 136/889 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,694 DEBUG Processing 72/1018 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:56,800 DEBUG Processing 130/852 atomic regions from SNP 38829 to 39430 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:56,802 DEBUG Processing 80/467 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:56,823 DEBUG Processing 53/1129 atomic regions from SNP 15652 to 16253 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:56,915 DEBUG Processing 137/889 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:56,939 DEBUG Processing 73/1018 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,023 DEBUG Processing 81/467 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,027 DEBUG Processing 131/852 atomic regions from SNP 39130 to 39731 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,090 DEBUG Processing 54/1129 atomic regions from SNP 15953 to 16554 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,139 DEBUG Processing 138/889 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,184 DEBUG Processing 74/1018 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,244 DEBUG Processing 82/467 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,268 DEBUG Processing 132/852 atomic regions from SNP 39431 to 40032 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,350 DEBUG Processing 55/1129 atomic regions from SNP 16254 to 16855 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,361 DEBUG Processing 139/889 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,430 DEBUG Processing 75/1018 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,495 DEBUG Processing 83/467 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,501 DEBUG Processing 133/852 atomic regions from SNP 39732 to 40333 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,586 DEBUG Processing 140/889 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,607 DEBUG Processing 56/1129 atomic regions from SNP 16555 to 17156 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,679 DEBUG Processing 76/1018 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,733 DEBUG Processing 84/467 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,757 DEBUG Processing 134/852 atomic regions from SNP 40033 to 40634 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:57,809 DEBUG Processing 141/889 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:57,862 DEBUG Processing 57/1129 atomic regions from SNP 16856 to 17457 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:57,929 DEBUG Processing 77/1018 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:57,963 DEBUG Processing 85/467 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:57,998 DEBUG Processing 135/852 atomic regions from SNP 40334 to 40935 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,060 DEBUG Processing 142/889 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,147 DEBUG Processing 58/1129 atomic regions from SNP 17157 to 17758 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,184 DEBUG Processing 78/1018 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,195 DEBUG Processing 86/467 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,228 DEBUG Processing 136/852 atomic regions from SNP 40635 to 41236 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,290 DEBUG Processing 143/889 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,418 DEBUG Processing 87/467 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,423 DEBUG Processing 59/1129 atomic regions from SNP 17458 to 18059 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,441 DEBUG Processing 79/1018 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,459 DEBUG Processing 137/852 atomic regions from SNP 40936 to 41537 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,514 DEBUG Processing 144/889 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,640 DEBUG Processing 88/467 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,685 DEBUG Processing 138/852 atomic regions from SNP 41237 to 41838 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,687 DEBUG Processing 60/1129 atomic regions from SNP 17759 to 18360 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,697 DEBUG Processing 80/1018 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,740 DEBUG Processing 145/889 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:58,860 DEBUG Processing 89/467 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:58,911 DEBUG Processing 139/852 atomic regions from SNP 41538 to 42139 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:58,947 DEBUG Processing 81/1018 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:58,951 DEBUG Processing 61/1129 atomic regions from SNP 18060 to 18661 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:58,965 DEBUG Processing 146/889 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,082 DEBUG Processing 90/467 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,139 DEBUG Processing 140/852 atomic regions from SNP 41839 to 42440 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,189 DEBUG Processing 147/889 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,195 DEBUG Processing 82/1018 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,218 DEBUG Processing 62/1129 atomic regions from SNP 18361 to 18962 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,303 DEBUG Processing 91/467 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,368 DEBUG Processing 141/852 atomic regions from SNP 42140 to 42741 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,415 DEBUG Processing 148/889 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,443 DEBUG Processing 83/1018 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,481 DEBUG Processing 63/1129 atomic regions from SNP 18662 to 19263 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,520 DEBUG Processing 92/467 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,598 DEBUG Processing 142/852 atomic regions from SNP 42441 to 43042 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,648 DEBUG Processing 149/889 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,692 DEBUG Processing 84/1018 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,732 DEBUG Processing 93/467 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 4 of 5). 2025-01-31 09:42:59,744 DEBUG Processing 64/1129 atomic regions from SNP 18963 to 19564 for chr1 (subchromosome 1 of 1). 2025-01-31 09:42:59,828 DEBUG Processing 143/852 atomic regions from SNP 42742 to 43343 for chr5 (subchromosome 1 of 1). 2025-01-31 09:42:59,882 DEBUG Processing 150/889 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:42:59,943 DEBUG Processing 85/1018 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:42:59,946 DEBUG Processing 94/467 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,008 DEBUG Processing 65/1129 atomic regions from SNP 19264 to 19865 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,046 DEBUG Processing 144/852 atomic regions from SNP 43043 to 43644 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,111 DEBUG Processing 151/889 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,170 DEBUG Processing 95/467 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,198 DEBUG Processing 86/1018 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,264 DEBUG Processing 145/852 atomic regions from SNP 43344 to 43945 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,274 DEBUG Processing 66/1129 atomic regions from SNP 19565 to 20166 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,352 DEBUG Processing 152/889 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,392 DEBUG Processing 96/467 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,454 DEBUG Processing 87/1018 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,487 DEBUG Processing 146/852 atomic regions from SNP 43645 to 44246 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,538 DEBUG Processing 67/1129 atomic regions from SNP 19866 to 20467 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,595 DEBUG Processing 153/889 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,619 DEBUG Processing 97/467 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,720 DEBUG Processing 88/1018 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:00,733 DEBUG Processing 147/852 atomic regions from SNP 43946 to 44547 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,803 DEBUG Processing 68/1129 atomic regions from SNP 20167 to 20768 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:00,822 DEBUG Processing 154/889 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:00,836 DEBUG Processing 98/467 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:00,985 DEBUG Processing 148/852 atomic regions from SNP 44247 to 44848 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:00,999 DEBUG Processing 89/1018 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,052 DEBUG Processing 99/467 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,071 DEBUG Processing 69/1129 atomic regions from SNP 20468 to 21069 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,073 DEBUG Processing 155/889 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,235 DEBUG Processing 149/852 atomic regions from SNP 44548 to 45149 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,249 DEBUG Processing 90/1018 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,271 DEBUG Processing 100/467 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,323 DEBUG Processing 156/889 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,342 DEBUG Processing 70/1129 atomic regions from SNP 20769 to 21370 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,484 DEBUG Processing 150/852 atomic regions from SNP 44849 to 45450 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,488 DEBUG Processing 101/467 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,499 DEBUG Processing 91/1018 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,547 DEBUG Processing 157/889 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,610 DEBUG Processing 71/1129 atomic regions from SNP 21070 to 21671 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,706 DEBUG Processing 102/467 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,746 DEBUG Processing 151/852 atomic regions from SNP 45150 to 45751 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:01,768 DEBUG Processing 92/1018 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:01,772 DEBUG Processing 158/889 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:01,875 DEBUG Processing 72/1129 atomic regions from SNP 21371 to 21972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:01,921 DEBUG Processing 103/467 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:01,999 DEBUG Processing 159/889 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,007 DEBUG Processing 152/852 atomic regions from SNP 45451 to 46052 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,038 DEBUG Processing 93/1018 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,135 DEBUG Processing 104/467 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,141 DEBUG Processing 73/1129 atomic regions from SNP 21672 to 22273 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,226 DEBUG Processing 160/889 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,256 DEBUG Processing 153/852 atomic regions from SNP 45752 to 46353 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,304 DEBUG Processing 94/1018 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,350 DEBUG Processing 105/467 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,418 DEBUG Processing 74/1129 atomic regions from SNP 21973 to 22574 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,454 DEBUG Processing 161/889 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,481 DEBUG Processing 154/852 atomic regions from SNP 46053 to 46654 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,562 DEBUG Processing 95/1018 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,565 DEBUG Processing 106/467 atomic regions from SNP 31605 to 32205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,678 DEBUG Processing 162/889 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,689 DEBUG Processing 75/1129 atomic regions from SNP 22274 to 22875 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,704 DEBUG Processing 155/852 atomic regions from SNP 46354 to 46955 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,776 DEBUG Processing 107/467 atomic regions from SNP 31905 to 32505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:02,805 DEBUG Processing 96/1018 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:02,906 DEBUG Processing 163/889 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:02,925 DEBUG Processing 156/852 atomic regions from SNP 46655 to 47256 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:02,958 DEBUG Processing 76/1129 atomic regions from SNP 22575 to 23176 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:02,989 DEBUG Processing 108/467 atomic regions from SNP 32205 to 32805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,045 DEBUG Processing 97/1018 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,149 DEBUG Processing 164/889 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,154 DEBUG Processing 157/852 atomic regions from SNP 46956 to 47557 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,220 DEBUG Processing 109/467 atomic regions from SNP 32505 to 33105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,231 DEBUG Processing 77/1129 atomic regions from SNP 22876 to 23477 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,288 DEBUG Processing 98/1018 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,394 DEBUG Processing 165/889 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,401 DEBUG Processing 158/852 atomic regions from SNP 47257 to 47858 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,436 DEBUG Processing 110/467 atomic regions from SNP 32805 to 33405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,493 DEBUG Processing 78/1129 atomic regions from SNP 23177 to 23778 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,527 DEBUG Processing 99/1018 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,619 DEBUG Processing 166/889 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,628 DEBUG Processing 159/852 atomic regions from SNP 47558 to 48159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,651 DEBUG Processing 111/467 atomic regions from SNP 33105 to 33705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:03,751 DEBUG Processing 79/1129 atomic regions from SNP 23478 to 24079 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:03,764 DEBUG Processing 100/1018 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:03,843 DEBUG Processing 167/889 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:03,849 DEBUG Processing 160/852 atomic regions from SNP 47859 to 48460 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:03,865 DEBUG Processing 112/467 atomic regions from SNP 33405 to 34005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,004 DEBUG Processing 101/1018 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,010 DEBUG Processing 80/1129 atomic regions from SNP 23779 to 24380 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,070 DEBUG Processing 168/889 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,077 DEBUG Processing 161/852 atomic regions from SNP 48160 to 48761 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,080 DEBUG Processing 113/467 atomic regions from SNP 33705 to 34305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,249 DEBUG Processing 102/1018 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,282 DEBUG Processing 81/1129 atomic regions from SNP 24080 to 24681 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,298 DEBUG Processing 114/467 atomic regions from SNP 34005 to 34605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,300 DEBUG Processing 169/889 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,328 DEBUG Processing 162/852 atomic regions from SNP 48461 to 49062 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,493 DEBUG Processing 103/1018 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,514 DEBUG Processing 115/467 atomic regions from SNP 34305 to 34905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,527 DEBUG Processing 170/889 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,555 DEBUG Processing 82/1129 atomic regions from SNP 24381 to 24982 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,575 DEBUG Processing 163/852 atomic regions from SNP 48762 to 49363 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,726 DEBUG Processing 116/467 atomic regions from SNP 34605 to 35205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,739 DEBUG Processing 104/1018 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,755 DEBUG Processing 171/889 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:04,811 DEBUG Processing 164/852 atomic regions from SNP 49063 to 49664 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:04,818 DEBUG Processing 83/1129 atomic regions from SNP 24682 to 25283 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:04,939 DEBUG Processing 117/467 atomic regions from SNP 34905 to 35505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:04,982 DEBUG Processing 105/1018 atomic regions from SNP 31304 to 31905 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:04,993 DEBUG Processing 172/889 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,049 DEBUG Processing 165/852 atomic regions from SNP 49364 to 49965 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,075 DEBUG Processing 84/1129 atomic regions from SNP 24983 to 25584 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,154 DEBUG Processing 118/467 atomic regions from SNP 35205 to 35805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,219 DEBUG Processing 173/889 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,251 DEBUG Processing 106/1018 atomic regions from SNP 31605 to 32206 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,292 DEBUG Processing 166/852 atomic regions from SNP 49665 to 50266 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,328 DEBUG Processing 85/1129 atomic regions from SNP 25284 to 25885 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,366 DEBUG Processing 119/467 atomic regions from SNP 35505 to 36105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,446 DEBUG Processing 174/889 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,497 DEBUG Processing 107/1018 atomic regions from SNP 31906 to 32507 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,541 DEBUG Processing 167/852 atomic regions from SNP 49966 to 50567 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,573 DEBUG Processing 120/467 atomic regions from SNP 35805 to 36405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,585 DEBUG Processing 86/1129 atomic regions from SNP 25585 to 26186 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,674 DEBUG Processing 175/889 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,743 DEBUG Processing 108/1018 atomic regions from SNP 32207 to 32808 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:05,778 DEBUG Processing 121/467 atomic regions from SNP 36105 to 36705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,784 DEBUG Processing 168/852 atomic regions from SNP 50267 to 50868 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:05,843 DEBUG Processing 87/1129 atomic regions from SNP 25886 to 26487 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:05,900 DEBUG Processing 176/889 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:05,986 DEBUG Processing 122/467 atomic regions from SNP 36405 to 37005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:05,992 DEBUG Processing 109/1018 atomic regions from SNP 32508 to 33109 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,009 DEBUG Processing 169/852 atomic regions from SNP 50568 to 51169 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,099 DEBUG Processing 88/1129 atomic regions from SNP 26187 to 26788 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,123 DEBUG Processing 177/889 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,204 DEBUG Processing 123/467 atomic regions from SNP 36705 to 37305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,245 DEBUG Processing 110/1018 atomic regions from SNP 32809 to 33410 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,250 DEBUG Processing 170/852 atomic regions from SNP 50869 to 51470 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,344 DEBUG Processing 178/889 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,353 DEBUG Processing 89/1129 atomic regions from SNP 26488 to 27089 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,426 DEBUG Processing 124/467 atomic regions from SNP 37005 to 37605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,498 DEBUG Processing 111/1018 atomic regions from SNP 33110 to 33711 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,500 DEBUG Processing 171/852 atomic regions from SNP 51170 to 51771 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,560 DEBUG Processing 179/889 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,607 DEBUG Processing 90/1129 atomic regions from SNP 26789 to 27390 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,637 DEBUG Processing 125/467 atomic regions from SNP 37305 to 37905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,734 DEBUG Processing 172/852 atomic regions from SNP 51471 to 52072 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,749 DEBUG Processing 112/1018 atomic regions from SNP 33411 to 34012 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:06,780 DEBUG Processing 180/889 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:06,842 DEBUG Processing 126/467 atomic regions from SNP 37605 to 38205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:06,857 DEBUG Processing 91/1129 atomic regions from SNP 27090 to 27691 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:06,991 DEBUG Processing 173/852 atomic regions from SNP 51772 to 52373 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:06,999 DEBUG Processing 113/1018 atomic regions from SNP 33712 to 34313 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,009 DEBUG Processing 181/889 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,050 DEBUG Processing 127/467 atomic regions from SNP 37905 to 38505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,114 DEBUG Processing 92/1129 atomic regions from SNP 27391 to 27992 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,234 DEBUG Processing 174/852 atomic regions from SNP 52073 to 52674 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,241 DEBUG Processing 182/889 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,255 DEBUG Processing 114/1018 atomic regions from SNP 34013 to 34614 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,267 DEBUG Processing 128/467 atomic regions from SNP 38205 to 38805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,367 DEBUG Processing 93/1129 atomic regions from SNP 27692 to 28293 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,471 DEBUG Processing 183/889 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,482 DEBUG Processing 175/852 atomic regions from SNP 52374 to 52975 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,487 DEBUG Processing 129/467 atomic regions from SNP 38505 to 39105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,508 DEBUG Processing 115/1018 atomic regions from SNP 34314 to 34915 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,622 DEBUG Processing 94/1129 atomic regions from SNP 27993 to 28594 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,707 DEBUG Processing 130/467 atomic regions from SNP 38805 to 39405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,715 DEBUG Processing 184/889 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,737 DEBUG Processing 176/852 atomic regions from SNP 52675 to 53276 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:07,760 DEBUG Processing 116/1018 atomic regions from SNP 34615 to 35216 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:07,874 DEBUG Processing 95/1129 atomic regions from SNP 28294 to 28895 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:07,926 DEBUG Processing 131/467 atomic regions from SNP 39105 to 39705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:07,946 DEBUG Processing 185/889 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:07,977 DEBUG Processing 177/852 atomic regions from SNP 52976 to 53577 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,007 DEBUG Processing 117/1018 atomic regions from SNP 34916 to 35517 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,132 DEBUG Processing 96/1129 atomic regions from SNP 28595 to 29196 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,145 DEBUG Processing 132/467 atomic regions from SNP 39405 to 40005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,178 DEBUG Processing 186/889 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,215 DEBUG Processing 178/852 atomic regions from SNP 53277 to 53878 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,256 DEBUG Processing 118/1018 atomic regions from SNP 35217 to 35818 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,359 DEBUG Processing 133/467 atomic regions from SNP 39705 to 40305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,389 DEBUG Processing 97/1129 atomic regions from SNP 28896 to 29497 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,406 DEBUG Processing 187/889 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,453 DEBUG Processing 179/852 atomic regions from SNP 53578 to 54179 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,496 DEBUG Processing 119/1018 atomic regions from SNP 35518 to 36119 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,574 DEBUG Processing 134/467 atomic regions from SNP 40005 to 40605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,633 DEBUG Processing 188/889 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,653 DEBUG Processing 98/1129 atomic regions from SNP 29197 to 29798 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,677 DEBUG Processing 180/852 atomic regions from SNP 53879 to 54480 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,735 DEBUG Processing 120/1018 atomic regions from SNP 35819 to 36420 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,785 DEBUG Processing 135/467 atomic regions from SNP 40305 to 40905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:08,860 DEBUG Processing 189/889 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:08,892 DEBUG Processing 181/852 atomic regions from SNP 54180 to 54781 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:08,914 DEBUG Processing 99/1129 atomic regions from SNP 29498 to 30099 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:08,973 DEBUG Processing 121/1018 atomic regions from SNP 36120 to 36721 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:08,991 DEBUG Processing 136/467 atomic regions from SNP 40605 to 41205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,089 DEBUG Processing 190/889 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,115 DEBUG Processing 182/852 atomic regions from SNP 54481 to 55082 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,177 DEBUG Processing 100/1129 atomic regions from SNP 29799 to 30400 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,198 DEBUG Processing 137/467 atomic regions from SNP 40905 to 41505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,217 DEBUG Processing 122/1018 atomic regions from SNP 36421 to 37022 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,312 DEBUG Processing 191/889 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,338 DEBUG Processing 183/852 atomic regions from SNP 54782 to 55383 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,411 DEBUG Processing 138/467 atomic regions from SNP 41205 to 41805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,440 DEBUG Processing 101/1129 atomic regions from SNP 30100 to 30701 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,460 DEBUG Processing 123/1018 atomic regions from SNP 36722 to 37323 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,531 DEBUG Processing 192/889 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,554 DEBUG Processing 184/852 atomic regions from SNP 55083 to 55684 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,625 DEBUG Processing 139/467 atomic regions from SNP 41505 to 42105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,703 DEBUG Processing 102/1129 atomic regions from SNP 30401 to 31002 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,704 DEBUG Processing 124/1018 atomic regions from SNP 37023 to 37624 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,748 DEBUG Processing 193/889 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:09,799 DEBUG Processing 185/852 atomic regions from SNP 55384 to 55985 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:09,834 DEBUG Processing 140/467 atomic regions from SNP 41805 to 42405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:09,951 DEBUG Processing 125/1018 atomic regions from SNP 37324 to 37925 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:09,967 DEBUG Processing 103/1129 atomic regions from SNP 30702 to 31303 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:09,973 DEBUG Processing 194/889 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,040 DEBUG Processing 141/467 atomic regions from SNP 42105 to 42705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,048 DEBUG Processing 186/852 atomic regions from SNP 55685 to 56286 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,199 DEBUG Processing 195/889 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,200 DEBUG Processing 126/1018 atomic regions from SNP 37625 to 38226 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,224 DEBUG Processing 104/1129 atomic regions from SNP 31003 to 31604 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,251 DEBUG Processing 142/467 atomic regions from SNP 42405 to 43005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,298 DEBUG Processing 187/852 atomic regions from SNP 55986 to 56587 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,427 DEBUG Processing 196/889 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,455 DEBUG Processing 127/1018 atomic regions from SNP 37926 to 38527 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,468 DEBUG Processing 143/467 atomic regions from SNP 42705 to 43305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,480 DEBUG Processing 105/1129 atomic regions from SNP 31304 to 31905 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,516 DEBUG Processing 188/852 atomic regions from SNP 56287 to 56888 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,650 DEBUG Processing 197/889 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,683 DEBUG Processing 144/467 atomic regions from SNP 43005 to 43605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,733 DEBUG Processing 106/1129 atomic regions from SNP 31605 to 32206 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:10,734 DEBUG Processing 128/1018 atomic regions from SNP 38227 to 38828 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:10,736 DEBUG Processing 189/852 atomic regions from SNP 56588 to 57189 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,870 DEBUG Processing 198/889 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:10,893 DEBUG Processing 145/467 atomic regions from SNP 43305 to 43905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:10,958 DEBUG Processing 190/852 atomic regions from SNP 56889 to 57490 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:10,987 DEBUG Processing 107/1129 atomic regions from SNP 31906 to 32507 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,018 DEBUG Processing 129/1018 atomic regions from SNP 38528 to 39129 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,088 DEBUG Processing 199/889 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,100 DEBUG Processing 146/467 atomic regions from SNP 43605 to 44205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,174 DEBUG Processing 191/852 atomic regions from SNP 57190 to 57791 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,248 DEBUG Processing 108/1129 atomic regions from SNP 32207 to 32808 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,300 DEBUG Processing 130/1018 atomic regions from SNP 38829 to 39430 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,310 DEBUG Processing 147/467 atomic regions from SNP 43905 to 44505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,314 DEBUG Processing 200/889 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,389 DEBUG Processing 192/852 atomic regions from SNP 57491 to 58092 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,510 DEBUG Processing 109/1129 atomic regions from SNP 32508 to 33109 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,530 DEBUG Processing 148/467 atomic regions from SNP 44205 to 44805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,543 DEBUG Processing 201/889 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,586 DEBUG Processing 131/1018 atomic regions from SNP 39130 to 39731 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,602 DEBUG Processing 193/852 atomic regions from SNP 57792 to 58393 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,752 DEBUG Processing 149/467 atomic regions from SNP 44505 to 45105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:11,771 DEBUG Processing 110/1129 atomic regions from SNP 32809 to 33410 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:11,774 DEBUG Processing 202/889 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:11,824 DEBUG Processing 194/852 atomic regions from SNP 58093 to 58694 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:11,870 DEBUG Processing 132/1018 atomic regions from SNP 39431 to 40032 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:11,965 DEBUG Processing 150/467 atomic regions from SNP 44805 to 45405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,001 DEBUG Processing 203/889 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,030 DEBUG Processing 111/1129 atomic regions from SNP 33110 to 33711 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,050 DEBUG Processing 195/852 atomic regions from SNP 58394 to 58995 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,136 DEBUG Processing 133/1018 atomic regions from SNP 39732 to 40333 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,175 DEBUG Processing 151/467 atomic regions from SNP 45105 to 45705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,225 DEBUG Processing 204/889 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,283 DEBUG Processing 112/1129 atomic regions from SNP 33411 to 34012 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,285 DEBUG Processing 196/852 atomic regions from SNP 58695 to 59296 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,387 DEBUG Processing 152/467 atomic regions from SNP 45405 to 46005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,413 DEBUG Processing 134/1018 atomic regions from SNP 40033 to 40634 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,448 DEBUG Processing 205/889 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,524 DEBUG Processing 197/852 atomic regions from SNP 58996 to 59597 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,539 DEBUG Processing 113/1129 atomic regions from SNP 33712 to 34313 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,599 DEBUG Processing 153/467 atomic regions from SNP 45705 to 46305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,671 DEBUG Processing 206/889 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,699 DEBUG Processing 135/1018 atomic regions from SNP 40334 to 40935 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,765 DEBUG Processing 198/852 atomic regions from SNP 59297 to 59898 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:12,798 DEBUG Processing 114/1129 atomic regions from SNP 34013 to 34614 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:12,812 DEBUG Processing 154/467 atomic regions from SNP 46005 to 46605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:12,894 DEBUG Processing 207/889 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:12,983 DEBUG Processing 136/1018 atomic regions from SNP 40635 to 41236 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:12,987 DEBUG Processing 199/852 atomic regions from SNP 59598 to 60199 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,024 DEBUG Processing 155/467 atomic regions from SNP 46305 to 46905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,050 DEBUG Processing 115/1129 atomic regions from SNP 34314 to 34915 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,119 DEBUG Processing 208/889 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,208 DEBUG Processing 200/852 atomic regions from SNP 59899 to 60500 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,236 DEBUG Processing 156/467 atomic regions from SNP 46605 to 47205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,269 DEBUG Processing 137/1018 atomic regions from SNP 40936 to 41537 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,298 DEBUG Processing 116/1129 atomic regions from SNP 34615 to 35216 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,347 DEBUG Processing 209/889 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,432 DEBUG Processing 201/852 atomic regions from SNP 60200 to 60801 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,450 DEBUG Processing 157/467 atomic regions from SNP 46905 to 47505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,554 DEBUG Processing 138/1018 atomic regions from SNP 41237 to 41838 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,557 DEBUG Processing 117/1129 atomic regions from SNP 34916 to 35517 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,573 DEBUG Processing 210/889 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,658 DEBUG Processing 202/852 atomic regions from SNP 60501 to 61102 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:13,667 DEBUG Processing 158/467 atomic regions from SNP 47205 to 47805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,794 DEBUG Processing 211/889 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:13,812 DEBUG Processing 118/1129 atomic regions from SNP 35217 to 35818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:13,815 DEBUG Processing 139/1018 atomic regions from SNP 41538 to 42139 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:13,887 DEBUG Processing 159/467 atomic regions from SNP 47505 to 48105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:13,888 DEBUG Processing 203/852 atomic regions from SNP 60802 to 61403 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,020 DEBUG Processing 212/889 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,070 DEBUG Processing 119/1129 atomic regions from SNP 35518 to 36119 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,086 DEBUG Processing 140/1018 atomic regions from SNP 41839 to 42440 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,108 DEBUG Processing 160/467 atomic regions from SNP 47805 to 48405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,117 DEBUG Processing 204/852 atomic regions from SNP 61103 to 61704 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,239 DEBUG Processing 213/889 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,328 DEBUG Processing 161/467 atomic regions from SNP 48105 to 48705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,328 DEBUG Processing 120/1129 atomic regions from SNP 35819 to 36420 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,345 DEBUG Processing 205/852 atomic regions from SNP 61404 to 62005 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,366 DEBUG Processing 141/1018 atomic regions from SNP 42140 to 42741 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,463 DEBUG Processing 214/889 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,545 DEBUG Processing 162/467 atomic regions from SNP 48405 to 49005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,569 DEBUG Processing 206/852 atomic regions from SNP 61705 to 62306 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,589 DEBUG Processing 121/1129 atomic regions from SNP 36120 to 36721 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,636 DEBUG Processing 142/1018 atomic regions from SNP 42441 to 43042 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,690 DEBUG Processing 215/889 atomic regions from SNP 64414 to 65015 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,757 DEBUG Processing 163/467 atomic regions from SNP 48705 to 49305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:14,787 DEBUG Processing 207/852 atomic regions from SNP 62006 to 62607 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:14,845 DEBUG Processing 122/1129 atomic regions from SNP 36421 to 37022 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:14,914 DEBUG Processing 143/1018 atomic regions from SNP 42742 to 43343 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:14,921 DEBUG Processing 216/889 atomic regions from SNP 64715 to 65316 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:14,974 DEBUG Processing 164/467 atomic regions from SNP 49005 to 49605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,007 DEBUG Processing 208/852 atomic regions from SNP 62307 to 62908 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,098 DEBUG Processing 123/1129 atomic regions from SNP 36722 to 37323 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,155 DEBUG Processing 217/889 atomic regions from SNP 65016 to 65617 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,198 DEBUG Processing 165/467 atomic regions from SNP 49305 to 49905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,203 DEBUG Processing 144/1018 atomic regions from SNP 43043 to 43644 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,230 DEBUG Processing 209/852 atomic regions from SNP 62608 to 63209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,355 DEBUG Processing 124/1129 atomic regions from SNP 37023 to 37624 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,387 DEBUG Processing 218/889 atomic regions from SNP 65317 to 65918 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,423 DEBUG Processing 166/467 atomic regions from SNP 49605 to 50205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,456 DEBUG Processing 210/852 atomic regions from SNP 62909 to 63510 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,489 DEBUG Processing 145/1018 atomic regions from SNP 43344 to 43945 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,617 DEBUG Processing 125/1129 atomic regions from SNP 37324 to 37925 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,619 DEBUG Processing 219/889 atomic regions from SNP 65618 to 66219 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,646 DEBUG Processing 167/467 atomic regions from SNP 49905 to 50505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,683 DEBUG Processing 211/852 atomic regions from SNP 63210 to 63811 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:15,761 DEBUG Processing 146/1018 atomic regions from SNP 43645 to 44246 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:15,850 DEBUG Processing 220/889 atomic regions from SNP 65919 to 66520 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:15,864 DEBUG Processing 168/467 atomic regions from SNP 50205 to 50805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:15,885 DEBUG Processing 126/1129 atomic regions from SNP 37625 to 38226 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:15,905 DEBUG Processing 212/852 atomic regions from SNP 63511 to 64112 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,023 DEBUG Processing 147/1018 atomic regions from SNP 43946 to 44547 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,078 DEBUG Processing 221/889 atomic regions from SNP 66220 to 66821 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,082 DEBUG Processing 169/467 atomic regions from SNP 50505 to 51105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,132 DEBUG Processing 213/852 atomic regions from SNP 63812 to 64413 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,147 DEBUG Processing 127/1129 atomic regions from SNP 37926 to 38527 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,286 DEBUG Processing 148/1018 atomic regions from SNP 44247 to 44848 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,299 DEBUG Processing 170/467 atomic regions from SNP 50805 to 51405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,307 DEBUG Processing 222/889 atomic regions from SNP 66521 to 67122 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,363 DEBUG Processing 214/852 atomic regions from SNP 64113 to 64714 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,404 DEBUG Processing 128/1129 atomic regions from SNP 38227 to 38828 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,514 DEBUG Processing 171/467 atomic regions from SNP 51105 to 51705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,534 DEBUG Processing 223/889 atomic regions from SNP 66822 to 67423 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,549 DEBUG Processing 149/1018 atomic regions from SNP 44548 to 45149 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,589 DEBUG Processing 215/852 atomic regions from SNP 64414 to 65015 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,665 DEBUG Processing 129/1129 atomic regions from SNP 38528 to 39129 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,726 DEBUG Processing 172/467 atomic regions from SNP 51405 to 52005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,758 DEBUG Processing 224/889 atomic regions from SNP 67123 to 67724 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:16,815 DEBUG Processing 216/852 atomic regions from SNP 64715 to 65316 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:16,830 DEBUG Processing 150/1018 atomic regions from SNP 44849 to 45450 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:16,926 DEBUG Processing 130/1129 atomic regions from SNP 38829 to 39430 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:16,937 DEBUG Processing 173/467 atomic regions from SNP 51705 to 52305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:16,982 DEBUG Processing 225/889 atomic regions from SNP 67424 to 68025 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,037 DEBUG Processing 217/852 atomic regions from SNP 65016 to 65617 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,114 DEBUG Processing 151/1018 atomic regions from SNP 45150 to 45751 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,151 DEBUG Processing 174/467 atomic regions from SNP 52005 to 52605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,191 DEBUG Processing 131/1129 atomic regions from SNP 39130 to 39731 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,206 DEBUG Processing 226/889 atomic regions from SNP 67725 to 68326 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,259 DEBUG Processing 218/852 atomic regions from SNP 65317 to 65918 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,367 DEBUG Processing 175/467 atomic regions from SNP 52305 to 52905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,386 DEBUG Processing 152/1018 atomic regions from SNP 45451 to 46052 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,434 DEBUG Processing 227/889 atomic regions from SNP 68026 to 68627 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,452 DEBUG Processing 132/1129 atomic regions from SNP 39431 to 40032 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,480 DEBUG Processing 219/852 atomic regions from SNP 65618 to 66219 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,579 DEBUG Processing 176/467 atomic regions from SNP 52605 to 53205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,652 DEBUG Processing 153/1018 atomic regions from SNP 45752 to 46353 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,665 DEBUG Processing 228/889 atomic regions from SNP 68327 to 68928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,704 DEBUG Processing 220/852 atomic regions from SNP 65919 to 66520 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,710 DEBUG Processing 133/1129 atomic regions from SNP 39732 to 40333 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:17,789 DEBUG Processing 177/467 atomic regions from SNP 52905 to 53505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:17,889 DEBUG Processing 229/889 atomic regions from SNP 68628 to 69229 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,911 DEBUG Processing 154/1018 atomic regions from SNP 46053 to 46654 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:17,929 DEBUG Processing 221/852 atomic regions from SNP 66220 to 66821 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:17,969 DEBUG Processing 134/1129 atomic regions from SNP 40033 to 40634 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,001 DEBUG Processing 178/467 atomic regions from SNP 53205 to 53805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,024 DEBUG Segmenting atomic regions: 2025-01-31 09:43:18,108 DEBUG Processing 230/889 atomic regions from SNP 68929 to 69530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,133 DEBUG Processing 1/645 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,155 DEBUG Processing 222/852 atomic regions from SNP 66521 to 67122 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,171 DEBUG Processing 155/1018 atomic regions from SNP 46354 to 46955 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,226 DEBUG Processing 179/467 atomic regions from SNP 53505 to 54105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,244 DEBUG Processing 135/1129 atomic regions from SNP 40334 to 40935 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,329 DEBUG Processing 231/889 atomic regions from SNP 69230 to 69831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,378 DEBUG Processing 223/852 atomic regions from SNP 66822 to 67423 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,390 DEBUG Processing 2/645 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,436 DEBUG Processing 156/1018 atomic regions from SNP 46655 to 47256 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,452 DEBUG Processing 180/467 atomic regions from SNP 53805 to 54405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,519 DEBUG Processing 136/1129 atomic regions from SNP 40635 to 41236 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,546 DEBUG Processing 232/889 atomic regions from SNP 69531 to 70132 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,608 DEBUG Processing 224/852 atomic regions from SNP 67123 to 67724 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,634 DEBUG Processing 3/645 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,678 DEBUG Processing 181/467 atomic regions from SNP 54105 to 54705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,717 DEBUG Processing 157/1018 atomic regions from SNP 46956 to 47557 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:18,768 DEBUG Processing 233/889 atomic regions from SNP 69832 to 70433 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,782 DEBUG Processing 137/1129 atomic regions from SNP 40936 to 41537 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:18,822 DEBUG Processing 225/852 atomic regions from SNP 67424 to 68025 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,856 DEBUG Processing 4/645 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:18,893 DEBUG Processing 182/467 atomic regions from SNP 54405 to 55005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:18,996 DEBUG Processing 234/889 atomic regions from SNP 70133 to 70734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,001 DEBUG Processing 158/1018 atomic regions from SNP 47257 to 47858 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,040 DEBUG Processing 226/852 atomic regions from SNP 67725 to 68326 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,042 DEBUG Processing 138/1129 atomic regions from SNP 41237 to 41838 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,101 DEBUG Processing 183/467 atomic regions from SNP 54705 to 55305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,109 DEBUG Processing 5/645 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,226 DEBUG Processing 235/889 atomic regions from SNP 70434 to 71035 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,268 DEBUG Processing 227/852 atomic regions from SNP 68026 to 68627 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,288 DEBUG Processing 159/1018 atomic regions from SNP 47558 to 48159 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,300 DEBUG Processing 139/1129 atomic regions from SNP 41538 to 42139 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,311 DEBUG Processing 184/467 atomic regions from SNP 55005 to 55605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,370 DEBUG Processing 6/645 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,452 DEBUG Processing 236/889 atomic regions from SNP 70735 to 71336 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,493 DEBUG Processing 228/852 atomic regions from SNP 68327 to 68928 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,528 DEBUG Processing 185/467 atomic regions from SNP 55305 to 55905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,560 DEBUG Processing 140/1129 atomic regions from SNP 41839 to 42440 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,569 DEBUG Processing 160/1018 atomic regions from SNP 47859 to 48460 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,622 DEBUG Processing 7/645 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,675 DEBUG Processing 237/889 atomic regions from SNP 71036 to 71637 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,715 DEBUG Processing 229/852 atomic regions from SNP 68628 to 69229 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,743 DEBUG Processing 186/467 atomic regions from SNP 55605 to 56205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:19,826 DEBUG Processing 141/1129 atomic regions from SNP 42140 to 42741 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:19,849 DEBUG Processing 161/1018 atomic regions from SNP 48160 to 48761 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:19,873 DEBUG Processing 8/645 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:19,895 DEBUG Processing 238/889 atomic regions from SNP 71337 to 71938 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,929 DEBUG Processing 230/852 atomic regions from SNP 68929 to 69530 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,950 DEBUG Processing 187/467 atomic regions from SNP 55905 to 56505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,091 DEBUG Processing 142/1129 atomic regions from SNP 42441 to 43042 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,124 DEBUG Processing 239/889 atomic regions from SNP 71638 to 72239 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,131 DEBUG Processing 9/645 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,136 DEBUG Processing 162/1018 atomic regions from SNP 48461 to 49062 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,149 DEBUG Processing 231/852 atomic regions from SNP 69230 to 69831 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,158 DEBUG Processing 188/467 atomic regions from SNP 56205 to 56805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,357 DEBUG Processing 143/1129 atomic regions from SNP 42742 to 43343 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,359 DEBUG Processing 240/889 atomic regions from SNP 71939 to 72540 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,376 DEBUG Processing 189/467 atomic regions from SNP 56505 to 57105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,377 DEBUG Processing 232/852 atomic regions from SNP 69531 to 70132 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,381 DEBUG Processing 10/645 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,417 DEBUG Processing 163/1018 atomic regions from SNP 48762 to 49363 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,591 DEBUG Processing 241/889 atomic regions from SNP 72240 to 72841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,602 DEBUG Processing 190/467 atomic regions from SNP 56805 to 57405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,613 DEBUG Processing 11/645 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,613 DEBUG Processing 233/852 atomic regions from SNP 69832 to 70433 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,622 DEBUG Processing 144/1129 atomic regions from SNP 43043 to 43644 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,701 DEBUG Processing 164/1018 atomic regions from SNP 49063 to 49664 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:20,819 DEBUG Processing 242/889 atomic regions from SNP 72541 to 73142 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,825 DEBUG Processing 191/467 atomic regions from SNP 57105 to 57705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:20,843 DEBUG Processing 234/852 atomic regions from SNP 70133 to 70734 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,855 DEBUG Processing 12/645 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:20,885 DEBUG Processing 145/1129 atomic regions from SNP 43344 to 43945 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:20,981 DEBUG Processing 165/1018 atomic regions from SNP 49364 to 49965 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,038 DEBUG Processing 243/889 atomic regions from SNP 72842 to 73443 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,056 DEBUG Processing 192/467 atomic regions from SNP 57405 to 58005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,066 DEBUG Processing 235/852 atomic regions from SNP 70434 to 71035 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,078 DEBUG Processing 13/645 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,150 DEBUG Processing 146/1129 atomic regions from SNP 43645 to 44246 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,256 DEBUG Processing 166/1018 atomic regions from SNP 49665 to 50266 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,262 DEBUG Processing 244/889 atomic regions from SNP 73143 to 73744 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,280 DEBUG Processing 193/467 atomic regions from SNP 57705 to 58305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,285 DEBUG Processing 236/852 atomic regions from SNP 70735 to 71336 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,318 DEBUG Processing 14/645 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,414 DEBUG Processing 147/1129 atomic regions from SNP 43946 to 44547 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,488 DEBUG Processing 245/889 atomic regions from SNP 73444 to 74045 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,493 DEBUG Processing 194/467 atomic regions from SNP 58005 to 58605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,508 DEBUG Processing 237/852 atomic regions from SNP 71036 to 71637 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,531 DEBUG Processing 167/1018 atomic regions from SNP 49966 to 50567 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,571 DEBUG Processing 15/645 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,680 DEBUG Processing 148/1129 atomic regions from SNP 44247 to 44848 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,719 DEBUG Processing 195/467 atomic regions from SNP 58305 to 58905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,724 DEBUG Processing 246/889 atomic regions from SNP 73745 to 74346 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,736 DEBUG Processing 238/852 atomic regions from SNP 71337 to 71938 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,808 DEBUG Processing 168/1018 atomic regions from SNP 50267 to 50868 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:21,812 DEBUG Processing 16/645 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:21,940 DEBUG Processing 196/467 atomic regions from SNP 58605 to 59205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:21,941 DEBUG Processing 149/1129 atomic regions from SNP 44548 to 45149 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:21,954 DEBUG Processing 247/889 atomic regions from SNP 74046 to 74647 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,964 DEBUG Processing 239/852 atomic regions from SNP 71638 to 72239 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,063 DEBUG Processing 17/645 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,072 DEBUG Processing 169/1018 atomic regions from SNP 50568 to 51169 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,159 DEBUG Processing 197/467 atomic regions from SNP 58905 to 59505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,184 DEBUG Processing 248/889 atomic regions from SNP 74347 to 74948 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,189 DEBUG Processing 240/852 atomic regions from SNP 71939 to 72540 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,204 DEBUG Processing 150/1129 atomic regions from SNP 44849 to 45450 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,304 DEBUG Processing 18/645 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,340 DEBUG Processing 170/1018 atomic regions from SNP 50869 to 51470 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,377 DEBUG Processing 198/467 atomic regions from SNP 59205 to 59805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,414 DEBUG Processing 249/889 atomic regions from SNP 74648 to 75249 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,417 DEBUG Processing 241/852 atomic regions from SNP 72240 to 72841 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,465 DEBUG Processing 151/1129 atomic regions from SNP 45150 to 45751 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,545 DEBUG Processing 19/645 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,593 DEBUG Processing 199/467 atomic regions from SNP 59505 to 60105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,615 DEBUG Processing 171/1018 atomic regions from SNP 51170 to 51771 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,646 DEBUG Processing 250/889 atomic regions from SNP 74949 to 75550 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,647 DEBUG Processing 242/852 atomic regions from SNP 72541 to 73142 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,723 DEBUG Processing 152/1129 atomic regions from SNP 45451 to 46052 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:22,791 DEBUG Processing 20/645 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:22,821 DEBUG Processing 200/467 atomic regions from SNP 59805 to 60405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:22,876 DEBUG Processing 243/852 atomic regions from SNP 72842 to 73443 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,879 DEBUG Processing 251/889 atomic regions from SNP 75250 to 75851 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,892 DEBUG Processing 172/1018 atomic regions from SNP 51471 to 52072 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:22,977 DEBUG Processing 153/1129 atomic regions from SNP 45752 to 46353 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,036 DEBUG Processing 21/645 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,047 DEBUG Processing 201/467 atomic regions from SNP 60105 to 60705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,102 DEBUG Processing 244/852 atomic regions from SNP 73143 to 73744 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,110 DEBUG Processing 252/889 atomic regions from SNP 75551 to 76152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,173 DEBUG Processing 173/1018 atomic regions from SNP 51772 to 52373 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,239 DEBUG Processing 154/1129 atomic regions from SNP 46053 to 46654 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,283 DEBUG Processing 202/467 atomic regions from SNP 60405 to 61005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,288 DEBUG Processing 22/645 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,321 DEBUG Processing 245/852 atomic regions from SNP 73444 to 74045 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,332 DEBUG Processing 253/889 atomic regions from SNP 75852 to 76453 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,455 DEBUG Processing 174/1018 atomic regions from SNP 52073 to 52674 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,503 DEBUG Processing 155/1129 atomic regions from SNP 46354 to 46955 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,528 DEBUG Processing 203/467 atomic regions from SNP 60705 to 61305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,538 DEBUG Processing 23/645 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:23,541 DEBUG Processing 246/852 atomic regions from SNP 73745 to 74346 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,555 DEBUG Processing 254/889 atomic regions from SNP 76153 to 76754 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,740 DEBUG Processing 175/1018 atomic regions from SNP 52374 to 52975 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:23,769 DEBUG Processing 247/852 atomic regions from SNP 74046 to 74647 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,771 DEBUG Processing 156/1129 atomic regions from SNP 46655 to 47256 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:23,784 DEBUG Processing 204/467 atomic regions from SNP 61005 to 61605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:23,785 DEBUG Processing 255/889 atomic regions from SNP 76454 to 77055 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,803 DEBUG Processing 24/645 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,000 DEBUG Processing 248/852 atomic regions from SNP 74347 to 74948 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,021 DEBUG Processing 256/889 atomic regions from SNP 76755 to 77356 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,030 DEBUG Processing 176/1018 atomic regions from SNP 52675 to 53276 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,044 DEBUG Processing 205/467 atomic regions from SNP 61305 to 61905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,054 DEBUG Processing 157/1129 atomic regions from SNP 46956 to 47557 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,061 DEBUG Processing 25/645 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,230 DEBUG Processing 249/852 atomic regions from SNP 74648 to 75249 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,258 DEBUG Processing 257/889 atomic regions from SNP 77056 to 77657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,297 DEBUG Processing 206/467 atomic regions from SNP 61605 to 62205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,317 DEBUG Processing 26/645 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,322 DEBUG Processing 158/1129 atomic regions from SNP 47257 to 47858 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,331 DEBUG Processing 177/1018 atomic regions from SNP 52976 to 53577 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,452 DEBUG Processing 250/852 atomic regions from SNP 74949 to 75550 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,490 DEBUG Processing 258/889 atomic regions from SNP 77357 to 77958 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,551 DEBUG Processing 207/467 atomic regions from SNP 61905 to 62505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,565 DEBUG Processing 27/645 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,585 DEBUG Processing 159/1129 atomic regions from SNP 47558 to 48159 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,621 DEBUG Processing 178/1018 atomic regions from SNP 53277 to 53878 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,677 DEBUG Processing 251/852 atomic regions from SNP 75250 to 75851 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,723 DEBUG Processing 259/889 atomic regions from SNP 77658 to 78259 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,798 DEBUG Processing 208/467 atomic regions from SNP 62205 to 62805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:24,799 DEBUG Processing 28/645 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:24,851 DEBUG Processing 160/1129 atomic regions from SNP 47859 to 48460 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:24,898 DEBUG Processing 179/1018 atomic regions from SNP 53578 to 54179 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:24,904 DEBUG Processing 252/852 atomic regions from SNP 75551 to 76152 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,956 DEBUG Processing 260/889 atomic regions from SNP 77959 to 78560 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,007 DEBUG Processing 209/467 atomic regions from SNP 62505 to 63105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,030 DEBUG Processing 29/645 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,114 DEBUG Processing 161/1129 atomic regions from SNP 48160 to 48761 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,132 DEBUG Processing 253/852 atomic regions from SNP 75852 to 76453 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,176 DEBUG Processing 180/1018 atomic regions from SNP 53879 to 54480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,220 DEBUG Processing 261/889 atomic regions from SNP 78260 to 78861 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,224 DEBUG Processing 210/467 atomic regions from SNP 62805 to 63405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,268 DEBUG Processing 30/645 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,355 DEBUG Processing 254/852 atomic regions from SNP 76153 to 76754 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,372 DEBUG Processing 162/1129 atomic regions from SNP 48461 to 49062 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,443 DEBUG Processing 211/467 atomic regions from SNP 63105 to 63705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,447 DEBUG Processing 181/1018 atomic regions from SNP 54180 to 54780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,485 DEBUG Processing 262/889 atomic regions from SNP 78561 to 79162 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,503 DEBUG Processing 31/645 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,572 DEBUG Processing 255/852 atomic regions from SNP 76454 to 77055 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,627 DEBUG Processing 163/1129 atomic regions from SNP 48762 to 49363 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,662 DEBUG Processing 212/467 atomic regions from SNP 63405 to 64005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,716 DEBUG Processing 182/1018 atomic regions from SNP 54480 to 55080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:25,740 DEBUG Processing 32/645 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,751 DEBUG Processing 263/889 atomic regions from SNP 78862 to 79463 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,793 DEBUG Processing 256/852 atomic regions from SNP 76755 to 77356 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,874 DEBUG Processing 213/467 atomic regions from SNP 63705 to 64305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:25,881 DEBUG Processing 164/1129 atomic regions from SNP 49063 to 49664 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:25,985 DEBUG Processing 33/645 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:25,994 DEBUG Processing 183/1018 atomic regions from SNP 54780 to 55380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,016 DEBUG Processing 264/889 atomic regions from SNP 79163 to 79764 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,018 DEBUG Processing 257/852 atomic regions from SNP 77056 to 77657 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,107 DEBUG Processing 214/467 atomic regions from SNP 64005 to 64605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,133 DEBUG Processing 165/1129 atomic regions from SNP 49364 to 49965 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,247 DEBUG Processing 34/645 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,247 DEBUG Processing 258/852 atomic regions from SNP 77357 to 77958 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,272 DEBUG Processing 265/889 atomic regions from SNP 79464 to 80065 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,275 DEBUG Processing 184/1018 atomic regions from SNP 55080 to 55680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,320 DEBUG Processing 215/467 atomic regions from SNP 64305 to 64905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,392 DEBUG Processing 166/1129 atomic regions from SNP 49665 to 50266 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,474 DEBUG Processing 259/852 atomic regions from SNP 77658 to 78259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,479 DEBUG Processing 35/645 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,509 DEBUG Processing 266/889 atomic regions from SNP 79765 to 80366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,537 DEBUG Processing 216/467 atomic regions from SNP 64605 to 65205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,546 DEBUG Processing 185/1018 atomic regions from SNP 55380 to 55980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,654 DEBUG Processing 167/1129 atomic regions from SNP 49966 to 50567 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,701 DEBUG Processing 260/852 atomic regions from SNP 77959 to 78559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,712 DEBUG Processing 36/645 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,745 DEBUG Processing 267/889 atomic regions from SNP 80066 to 80667 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,757 DEBUG Processing 217/467 atomic regions from SNP 64905 to 65505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,803 DEBUG Processing 186/1018 atomic regions from SNP 55680 to 56280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:26,919 DEBUG Processing 168/1129 atomic regions from SNP 50267 to 50868 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:26,926 DEBUG Processing 261/852 atomic regions from SNP 78259 to 78859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,943 DEBUG Processing 37/645 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:26,974 DEBUG Processing 218/467 atomic regions from SNP 65205 to 65805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:26,975 DEBUG Processing 268/889 atomic regions from SNP 80367 to 80968 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,055 DEBUG Processing 187/1018 atomic regions from SNP 55980 to 56580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,151 DEBUG Processing 262/852 atomic regions from SNP 78559 to 79159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,174 DEBUG Processing 38/645 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,185 DEBUG Processing 169/1129 atomic regions from SNP 50568 to 51169 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,195 DEBUG Processing 219/467 atomic regions from SNP 65505 to 66105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,206 DEBUG Processing 269/889 atomic regions from SNP 80668 to 81269 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,317 DEBUG Processing 188/1018 atomic regions from SNP 56280 to 56880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,376 DEBUG Processing 263/852 atomic regions from SNP 78859 to 79459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,405 DEBUG Processing 39/645 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,415 DEBUG Processing 220/467 atomic regions from SNP 65805 to 66405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,438 DEBUG Processing 270/889 atomic regions from SNP 80969 to 81570 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,454 DEBUG Processing 170/1129 atomic regions from SNP 50869 to 51470 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,579 DEBUG Processing 189/1018 atomic regions from SNP 56580 to 57180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,598 DEBUG Processing 264/852 atomic regions from SNP 79159 to 79759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,633 DEBUG Processing 221/467 atomic regions from SNP 66105 to 66705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,634 DEBUG Processing 40/645 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,665 DEBUG Processing 271/889 atomic regions from SNP 81270 to 81871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,723 DEBUG Processing 171/1129 atomic regions from SNP 51170 to 51771 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:27,824 DEBUG Processing 265/852 atomic regions from SNP 79459 to 80059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,855 DEBUG Processing 222/467 atomic regions from SNP 66405 to 67005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:27,862 DEBUG Processing 41/645 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:27,864 DEBUG Processing 190/1018 atomic regions from SNP 56880 to 57480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:27,897 DEBUG Processing 272/889 atomic regions from SNP 81571 to 82172 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,995 DEBUG Processing 172/1129 atomic regions from SNP 51471 to 52072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,046 DEBUG Processing 266/852 atomic regions from SNP 79759 to 80359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,086 DEBUG Processing 42/645 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,089 DEBUG Processing 223/467 atomic regions from SNP 66705 to 67305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,127 DEBUG Processing 273/889 atomic regions from SNP 81872 to 82473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,139 DEBUG Processing 191/1018 atomic regions from SNP 57180 to 57780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,270 DEBUG Processing 267/852 atomic regions from SNP 80059 to 80659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,302 DEBUG Processing 173/1129 atomic regions from SNP 51772 to 52373 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,315 DEBUG Processing 43/645 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,325 DEBUG Processing 224/467 atomic regions from SNP 67005 to 67605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,367 DEBUG Processing 274/889 atomic regions from SNP 82173 to 82774 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,414 DEBUG Processing 192/1018 atomic regions from SNP 57480 to 58080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,497 DEBUG Processing 268/852 atomic regions from SNP 80359 to 80959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,546 DEBUG Processing 44/645 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,546 DEBUG Processing 225/467 atomic regions from SNP 67305 to 67905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,587 DEBUG Processing 174/1129 atomic regions from SNP 52073 to 52674 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,604 DEBUG Processing 275/889 atomic regions from SNP 82474 to 83075 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,701 DEBUG Processing 193/1018 atomic regions from SNP 57780 to 58380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,720 DEBUG Processing 269/852 atomic regions from SNP 80659 to 81259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,761 DEBUG Processing 226/467 atomic regions from SNP 67605 to 68205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,780 DEBUG Processing 45/645 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:28,840 DEBUG Processing 276/889 atomic regions from SNP 82775 to 83376 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,882 DEBUG Processing 175/1129 atomic regions from SNP 52374 to 52975 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:28,950 DEBUG Processing 270/852 atomic regions from SNP 80959 to 81559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,979 DEBUG Processing 227/467 atomic regions from SNP 67905 to 68505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:28,981 DEBUG Processing 194/1018 atomic regions from SNP 58080 to 58680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,010 DEBUG Processing 46/645 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,071 DEBUG Processing 277/889 atomic regions from SNP 83076 to 83677 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,176 DEBUG Processing 176/1129 atomic regions from SNP 52675 to 53276 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,184 DEBUG Processing 271/852 atomic regions from SNP 81259 to 81859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,207 DEBUG Processing 228/467 atomic regions from SNP 68205 to 68805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,242 DEBUG Processing 47/645 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,269 DEBUG Processing 195/1018 atomic regions from SNP 58380 to 58980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,299 DEBUG Processing 278/889 atomic regions from SNP 83377 to 83978 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,418 DEBUG Processing 272/852 atomic regions from SNP 81559 to 82159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,439 DEBUG Processing 229/467 atomic regions from SNP 68505 to 69105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,471 DEBUG Processing 177/1129 atomic regions from SNP 52976 to 53577 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,479 DEBUG Processing 48/645 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,535 DEBUG Processing 279/889 atomic regions from SNP 83678 to 84279 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,545 DEBUG Processing 196/1018 atomic regions from SNP 58680 to 59280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,644 DEBUG Processing 273/852 atomic regions from SNP 81859 to 82459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,664 DEBUG Processing 230/467 atomic regions from SNP 68805 to 69405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,716 DEBUG Processing 49/645 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:29,770 DEBUG Processing 178/1129 atomic regions from SNP 53277 to 53878 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:29,775 DEBUG Processing 280/889 atomic regions from SNP 83979 to 84580 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,813 DEBUG Processing 197/1018 atomic regions from SNP 58980 to 59580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,870 DEBUG Processing 274/852 atomic regions from SNP 82159 to 82759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,880 DEBUG Processing 231/467 atomic regions from SNP 69105 to 69705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:29,945 DEBUG Processing 50/645 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,015 DEBUG Processing 281/889 atomic regions from SNP 84280 to 84881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,059 DEBUG Processing 179/1129 atomic regions from SNP 53578 to 54179 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,088 DEBUG Processing 198/1018 atomic regions from SNP 59280 to 59880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,099 DEBUG Processing 275/852 atomic regions from SNP 82459 to 83059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,101 DEBUG Processing 232/467 atomic regions from SNP 69405 to 70005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,175 DEBUG Processing 51/645 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,252 DEBUG Processing 282/889 atomic regions from SNP 84581 to 85181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,332 DEBUG Processing 233/467 atomic regions from SNP 69705 to 70305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,339 DEBUG Processing 276/852 atomic regions from SNP 82759 to 83359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,354 DEBUG Processing 199/1018 atomic regions from SNP 59580 to 60180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,366 DEBUG Processing 180/1129 atomic regions from SNP 53879 to 54480 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,407 DEBUG Processing 52/645 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,486 DEBUG Processing 283/889 atomic regions from SNP 84881 to 85481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,566 DEBUG Processing 234/467 atomic regions from SNP 70005 to 70605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,580 DEBUG Processing 277/852 atomic regions from SNP 83059 to 83659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,622 DEBUG Processing 200/1018 atomic regions from SNP 59880 to 60480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,640 DEBUG Processing 53/645 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,652 DEBUG Processing 181/1129 atomic regions from SNP 54180 to 54781 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,709 DEBUG Processing 284/889 atomic regions from SNP 85181 to 85781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,790 DEBUG Processing 235/467 atomic regions from SNP 70305 to 70905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:30,823 DEBUG Processing 278/852 atomic regions from SNP 83359 to 83959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,875 DEBUG Processing 54/645 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:30,888 DEBUG Processing 201/1018 atomic regions from SNP 60180 to 60780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,921 DEBUG Processing 182/1129 atomic regions from SNP 54481 to 55082 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:30,940 DEBUG Processing 285/889 atomic regions from SNP 85481 to 86081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,008 DEBUG Processing 236/467 atomic regions from SNP 70605 to 71205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,060 DEBUG Processing 279/852 atomic regions from SNP 83659 to 84259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,107 DEBUG Processing 55/645 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,151 DEBUG Processing 202/1018 atomic regions from SNP 60480 to 61080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,176 DEBUG Processing 286/889 atomic regions from SNP 85781 to 86381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,192 DEBUG Processing 183/1129 atomic regions from SNP 54782 to 55383 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,228 DEBUG Processing 237/467 atomic regions from SNP 70905 to 71505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,295 DEBUG Processing 280/852 atomic regions from SNP 83959 to 84559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,338 DEBUG Processing 56/645 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,412 DEBUG Processing 203/1018 atomic regions from SNP 60780 to 61380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,413 DEBUG Processing 287/889 atomic regions from SNP 86081 to 86681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,455 DEBUG Processing 238/467 atomic regions from SNP 71205 to 71805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,464 DEBUG Processing 184/1129 atomic regions from SNP 55083 to 55684 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,520 DEBUG Processing 281/852 atomic regions from SNP 84259 to 84859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,562 DEBUG Processing 57/645 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,643 DEBUG Processing 288/889 atomic regions from SNP 86381 to 86981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,666 DEBUG Processing 204/1018 atomic regions from SNP 61080 to 61680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,684 DEBUG Processing 239/467 atomic regions from SNP 71505 to 72105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,732 DEBUG Processing 185/1129 atomic regions from SNP 55384 to 55985 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:31,752 DEBUG Processing 282/852 atomic regions from SNP 84559 to 85159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,788 DEBUG Processing 58/645 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:31,872 DEBUG Processing 289/889 atomic regions from SNP 86681 to 87281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,911 DEBUG Processing 240/467 atomic regions from SNP 71805 to 72405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:31,924 DEBUG Processing 205/1018 atomic regions from SNP 61380 to 61980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,989 DEBUG Processing 283/852 atomic regions from SNP 84859 to 85459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,998 DEBUG Processing 186/1129 atomic regions from SNP 55685 to 56286 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,017 DEBUG Processing 59/645 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,100 DEBUG Processing 290/889 atomic regions from SNP 86981 to 87581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,135 DEBUG Processing 241/467 atomic regions from SNP 72105 to 72705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,189 DEBUG Processing 206/1018 atomic regions from SNP 61680 to 62280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,243 DEBUG Processing 284/852 atomic regions from SNP 85159 to 85759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,250 DEBUG Processing 60/645 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,296 DEBUG Processing 187/1129 atomic regions from SNP 55986 to 56587 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,333 DEBUG Processing 291/889 atomic regions from SNP 87281 to 87881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,360 DEBUG Processing 242/467 atomic regions from SNP 72405 to 73005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,460 DEBUG Processing 207/1018 atomic regions from SNP 61980 to 62580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,482 DEBUG Processing 61/645 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,501 DEBUG Processing 285/852 atomic regions from SNP 85459 to 86059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,565 DEBUG Processing 292/889 atomic regions from SNP 87581 to 88181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,583 DEBUG Processing 243/467 atomic regions from SNP 72705 to 73305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,603 DEBUG Processing 188/1129 atomic regions from SNP 56287 to 56888 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,712 DEBUG Processing 62/645 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,725 DEBUG Processing 286/852 atomic regions from SNP 85759 to 86359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,736 DEBUG Processing 208/1018 atomic regions from SNP 62280 to 62880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,797 DEBUG Processing 293/889 atomic regions from SNP 87881 to 88481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,809 DEBUG Processing 244/467 atomic regions from SNP 73005 to 73605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:32,909 DEBUG Processing 189/1129 atomic regions from SNP 56588 to 57189 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,953 DEBUG Processing 63/645 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:32,955 DEBUG Processing 287/852 atomic regions from SNP 86059 to 86659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,994 DEBUG Processing 209/1018 atomic regions from SNP 62580 to 63180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,031 DEBUG Processing 294/889 atomic regions from SNP 88181 to 88781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,032 DEBUG Processing 245/467 atomic regions from SNP 73305 to 73905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,186 DEBUG Processing 288/852 atomic regions from SNP 86359 to 86959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,193 DEBUG Processing 64/645 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,219 DEBUG Processing 190/1129 atomic regions from SNP 56889 to 57490 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,255 DEBUG Processing 210/1018 atomic regions from SNP 62880 to 63480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,260 DEBUG Processing 246/467 atomic regions from SNP 73605 to 74205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,271 DEBUG Processing 295/889 atomic regions from SNP 88481 to 89081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,413 DEBUG Processing 289/852 atomic regions from SNP 86659 to 87259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,435 DEBUG Processing 65/645 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,489 DEBUG Processing 247/467 atomic regions from SNP 73905 to 74505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,512 DEBUG Processing 296/889 atomic regions from SNP 88781 to 89381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,520 DEBUG Processing 211/1018 atomic regions from SNP 63180 to 63780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,535 DEBUG Processing 191/1129 atomic regions from SNP 57190 to 57791 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,637 DEBUG Processing 290/852 atomic regions from SNP 86959 to 87559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,674 DEBUG Processing 66/645 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,714 DEBUG Processing 248/467 atomic regions from SNP 74205 to 74805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,751 DEBUG Processing 297/889 atomic regions from SNP 89081 to 89681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,799 DEBUG Processing 212/1018 atomic regions from SNP 63480 to 64080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,854 DEBUG Processing 192/1129 atomic regions from SNP 57491 to 58092 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,875 DEBUG Processing 291/852 atomic regions from SNP 87259 to 87859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,924 DEBUG Processing 67/645 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:33,947 DEBUG Processing 249/467 atomic regions from SNP 74505 to 75105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:33,997 DEBUG Processing 298/889 atomic regions from SNP 89381 to 89981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,098 DEBUG Processing 213/1018 atomic regions from SNP 63780 to 64380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,131 DEBUG Processing 292/852 atomic regions from SNP 87559 to 88159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,166 DEBUG Processing 193/1129 atomic regions from SNP 57792 to 58393 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,176 DEBUG Processing 68/645 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,193 DEBUG Processing 250/467 atomic regions from SNP 74805 to 75405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,250 DEBUG Processing 299/889 atomic regions from SNP 89681 to 90281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,384 DEBUG Processing 293/852 atomic regions from SNP 87859 to 88459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,391 DEBUG Processing 214/1018 atomic regions from SNP 64080 to 64680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,434 DEBUG Processing 69/645 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,437 DEBUG Processing 251/467 atomic regions from SNP 75105 to 75705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,464 DEBUG Processing 194/1129 atomic regions from SNP 58093 to 58694 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,503 DEBUG Processing 300/889 atomic regions from SNP 89981 to 90581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,641 DEBUG Processing 294/852 atomic regions from SNP 88159 to 88759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,685 DEBUG Processing 252/467 atomic regions from SNP 75405 to 76005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,688 DEBUG Processing 70/645 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:34,706 DEBUG Processing 215/1018 atomic regions from SNP 64380 to 64980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,760 DEBUG Processing 301/889 atomic regions from SNP 90281 to 90881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,772 DEBUG Processing 195/1129 atomic regions from SNP 58394 to 58995 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,896 DEBUG Processing 295/852 atomic regions from SNP 88459 to 89059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,933 DEBUG Processing 253/467 atomic regions from SNP 75705 to 76305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:34,944 DEBUG Processing 71/645 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,010 DEBUG Processing 216/1018 atomic regions from SNP 64680 to 65280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,021 DEBUG Processing 302/889 atomic regions from SNP 90581 to 91181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,150 DEBUG Processing 196/1129 atomic regions from SNP 58695 to 59296 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,263 DEBUG Processing 296/852 atomic regions from SNP 88759 to 89359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,266 DEBUG Processing 254/467 atomic regions from SNP 76005 to 76605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,275 DEBUG Processing 72/645 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,326 DEBUG Processing 217/1018 atomic regions from SNP 64980 to 65580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,331 DEBUG Processing 303/889 atomic regions from SNP 90881 to 91481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,432 DEBUG Processing 197/1129 atomic regions from SNP 58996 to 59597 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,506 DEBUG Processing 255/467 atomic regions from SNP 76305 to 76905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,529 DEBUG Processing 297/852 atomic regions from SNP 89059 to 89659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,530 DEBUG Processing 73/645 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,604 DEBUG Processing 218/1018 atomic regions from SNP 65280 to 65880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,608 DEBUG Processing 304/889 atomic regions from SNP 91181 to 91781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,723 DEBUG Processing 198/1129 atomic regions from SNP 59297 to 59898 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,735 DEBUG Processing 256/467 atomic regions from SNP 76605 to 77205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:35,776 DEBUG Processing 74/645 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:35,795 DEBUG Processing 298/852 atomic regions from SNP 89359 to 89959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,872 DEBUG Processing 219/1018 atomic regions from SNP 65580 to 66180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,876 DEBUG Processing 305/889 atomic regions from SNP 91481 to 92081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,960 DEBUG Processing 257/467 atomic regions from SNP 76905 to 77505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,017 DEBUG Processing 75/645 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,040 DEBUG Processing 199/1129 atomic regions from SNP 59598 to 60199 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,042 DEBUG Processing 299/852 atomic regions from SNP 89659 to 90259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,115 DEBUG Processing 306/889 atomic regions from SNP 91781 to 92381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,136 DEBUG Processing 220/1018 atomic regions from SNP 65880 to 66480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,191 DEBUG Processing 258/467 atomic regions from SNP 77205 to 77805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,271 DEBUG Processing 76/645 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,287 DEBUG Processing 300/852 atomic regions from SNP 89959 to 90559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,337 DEBUG Processing 200/1129 atomic regions from SNP 59899 to 60500 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,352 DEBUG Processing 307/889 atomic regions from SNP 92081 to 92681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,401 DEBUG Processing 221/1018 atomic regions from SNP 66180 to 66780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,428 DEBUG Processing 259/467 atomic regions from SNP 77505 to 78105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,513 DEBUG Processing 77/645 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,540 DEBUG Processing 301/852 atomic regions from SNP 90259 to 90859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,587 DEBUG Processing 308/889 atomic regions from SNP 92381 to 92981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,620 DEBUG Processing 201/1129 atomic regions from SNP 60200 to 60801 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,657 DEBUG Processing 260/467 atomic regions from SNP 77805 to 78405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,665 DEBUG Processing 222/1018 atomic regions from SNP 66480 to 67080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,754 DEBUG Processing 78/645 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:36,784 DEBUG Processing 302/852 atomic regions from SNP 90559 to 91159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,822 DEBUG Processing 309/889 atomic regions from SNP 92681 to 93281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,891 DEBUG Processing 261/467 atomic regions from SNP 78105 to 78705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:36,892 DEBUG Processing 202/1129 atomic regions from SNP 60501 to 61102 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,934 DEBUG Processing 223/1018 atomic regions from SNP 66780 to 67380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,997 DEBUG Processing 79/645 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,035 DEBUG Processing 303/852 atomic regions from SNP 90859 to 91459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,073 DEBUG Processing 310/889 atomic regions from SNP 92981 to 93581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,131 DEBUG Processing 262/467 atomic regions from SNP 78405 to 79005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,166 DEBUG Processing 203/1129 atomic regions from SNP 60802 to 61403 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,204 DEBUG Processing 224/1018 atomic regions from SNP 67080 to 67680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,237 DEBUG Processing 80/645 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,290 DEBUG Processing 304/852 atomic regions from SNP 91159 to 91759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,319 DEBUG Processing 311/889 atomic regions from SNP 93281 to 93881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,368 DEBUG Processing 263/467 atomic regions from SNP 78705 to 79305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,460 DEBUG Processing 204/1129 atomic regions from SNP 61103 to 61704 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,463 DEBUG Processing 225/1018 atomic regions from SNP 67380 to 67980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,475 DEBUG Processing 81/645 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,547 DEBUG Processing 305/852 atomic regions from SNP 91459 to 92059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,566 DEBUG Processing 312/889 atomic regions from SNP 93581 to 94181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,611 DEBUG Processing 264/467 atomic regions from SNP 79005 to 79605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,707 DEBUG Processing 82/645 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,722 DEBUG Processing 226/1018 atomic regions from SNP 67680 to 68280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,761 DEBUG Processing 205/1129 atomic regions from SNP 61404 to 62005 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,799 DEBUG Processing 306/852 atomic regions from SNP 91759 to 92359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,808 DEBUG Processing 313/889 atomic regions from SNP 93881 to 94481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,852 DEBUG Processing 265/467 atomic regions from SNP 79305 to 79905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:37,948 DEBUG Processing 83/645 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:37,989 DEBUG Processing 227/1018 atomic regions from SNP 67980 to 68580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,052 DEBUG Processing 314/889 atomic regions from SNP 94181 to 94781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,054 DEBUG Processing 307/852 atomic regions from SNP 92059 to 92659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,056 DEBUG Processing 206/1129 atomic regions from SNP 61705 to 62306 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,091 DEBUG Processing 266/467 atomic regions from SNP 79605 to 80205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,205 DEBUG Processing 84/645 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,258 DEBUG Processing 228/1018 atomic regions from SNP 68280 to 68880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,300 DEBUG Processing 315/889 atomic regions from SNP 94481 to 95081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,305 DEBUG Processing 308/852 atomic regions from SNP 92359 to 92959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,335 DEBUG Processing 207/1129 atomic regions from SNP 62006 to 62607 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,339 DEBUG Processing 267/467 atomic regions from SNP 79905 to 80505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,466 DEBUG Processing 85/645 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,527 DEBUG Processing 229/1018 atomic regions from SNP 68580 to 69180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,544 DEBUG Processing 316/889 atomic regions from SNP 94781 to 95381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,565 DEBUG Processing 309/852 atomic regions from SNP 92659 to 93259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,572 DEBUG Processing 268/467 atomic regions from SNP 80205 to 80805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,637 DEBUG Processing 208/1129 atomic regions from SNP 62307 to 62908 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,722 DEBUG Processing 86/645 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:38,798 DEBUG Processing 317/889 atomic regions from SNP 95081 to 95681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,801 DEBUG Processing 230/1018 atomic regions from SNP 68880 to 69480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,815 DEBUG Processing 269/467 atomic regions from SNP 80505 to 81105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:38,819 DEBUG Processing 310/852 atomic regions from SNP 92959 to 93559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,997 DEBUG Processing 209/1129 atomic regions from SNP 62608 to 63209 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,106 DEBUG Processing 87/645 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,163 DEBUG Processing 270/467 atomic regions from SNP 80805 to 81405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,175 DEBUG Processing 318/889 atomic regions from SNP 95381 to 95981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,185 DEBUG Processing 311/852 atomic regions from SNP 93259 to 93859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,198 DEBUG Processing 231/1018 atomic regions from SNP 69180 to 69780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,328 DEBUG Processing 210/1129 atomic regions from SNP 62909 to 63510 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,419 DEBUG Processing 88/645 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,472 DEBUG Processing 271/467 atomic regions from SNP 81105 to 81705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,482 DEBUG Processing 319/889 atomic regions from SNP 95681 to 96281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,521 DEBUG Processing 312/852 atomic regions from SNP 93559 to 94159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,605 DEBUG Processing 232/1018 atomic regions from SNP 69480 to 70080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,757 DEBUG Processing 211/1129 atomic regions from SNP 63210 to 63811 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,796 DEBUG Processing 89/645 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:39,810 DEBUG Processing 272/467 atomic regions from SNP 81405 to 82005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:39,827 DEBUG Processing 320/889 atomic regions from SNP 95981 to 96581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,861 DEBUG Processing 313/852 atomic regions from SNP 93859 to 94459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,910 DEBUG Processing 233/1018 atomic regions from SNP 69780 to 70380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,034 DEBUG Processing 212/1129 atomic regions from SNP 63511 to 64112 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,043 DEBUG Processing 273/467 atomic regions from SNP 81705 to 82305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,049 DEBUG Processing 90/645 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,076 DEBUG Processing 321/889 atomic regions from SNP 96281 to 96881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,131 DEBUG Processing 314/852 atomic regions from SNP 94159 to 94759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,188 DEBUG Processing 234/1018 atomic regions from SNP 70080 to 70680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,302 DEBUG Processing 274/467 atomic regions from SNP 82005 to 82605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,333 DEBUG Processing 91/645 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,339 DEBUG Processing 213/1129 atomic regions from SNP 63812 to 64413 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,346 DEBUG Processing 322/889 atomic regions from SNP 96581 to 97181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,400 DEBUG Processing 315/852 atomic regions from SNP 94459 to 95059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,452 DEBUG Processing 235/1018 atomic regions from SNP 70380 to 70980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,566 DEBUG Processing 275/467 atomic regions from SNP 82305 to 82905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,613 DEBUG Processing 92/645 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,647 DEBUG Processing 323/889 atomic regions from SNP 96881 to 97481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,687 DEBUG Processing 214/1129 atomic regions from SNP 64113 to 64714 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,753 DEBUG Processing 316/852 atomic regions from SNP 94759 to 95359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,811 DEBUG Processing 236/1018 atomic regions from SNP 70680 to 71280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,870 DEBUG Processing 276/467 atomic regions from SNP 82605 to 83205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:40,960 DEBUG Processing 93/645 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:40,991 DEBUG Processing 324/889 atomic regions from SNP 97181 to 97781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,061 DEBUG Processing 317/852 atomic regions from SNP 95059 to 95659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,067 DEBUG Processing 215/1129 atomic regions from SNP 64414 to 65015 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,107 DEBUG Processing 277/467 atomic regions from SNP 82905 to 83505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,121 DEBUG Processing 237/1018 atomic regions from SNP 70980 to 71580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,198 DEBUG Processing 94/645 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,255 DEBUG Processing 325/889 atomic regions from SNP 97481 to 98081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,427 DEBUG Processing 318/852 atomic regions from SNP 95359 to 95959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,479 DEBUG Processing 216/1129 atomic regions from SNP 64715 to 65316 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,484 DEBUG Processing 278/467 atomic regions from SNP 83205 to 83805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,520 DEBUG Processing 238/1018 atomic regions from SNP 71280 to 71880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,526 DEBUG Processing 95/645 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,577 DEBUG Processing 326/889 atomic regions from SNP 97781 to 98381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,692 DEBUG Processing 319/852 atomic regions from SNP 95659 to 96259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,727 DEBUG Processing 279/467 atomic regions from SNP 83505 to 84105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:41,778 DEBUG Processing 217/1129 atomic regions from SNP 65016 to 65617 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,797 DEBUG Processing 96/645 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:41,810 DEBUG Processing 239/1018 atomic regions from SNP 71580 to 72180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,834 DEBUG Processing 327/889 atomic regions from SNP 98081 to 98681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,949 DEBUG Processing 320/852 atomic regions from SNP 95959 to 96559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,972 DEBUG Processing 280/467 atomic regions from SNP 83805 to 84405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,097 DEBUG Processing 97/645 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,127 DEBUG Processing 218/1129 atomic regions from SNP 65317 to 65918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,139 DEBUG Processing 328/889 atomic regions from SNP 98381 to 98981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,145 DEBUG Processing 240/1018 atomic regions from SNP 71880 to 72480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,250 DEBUG Processing 321/852 atomic regions from SNP 96259 to 96859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,272 DEBUG Processing 281/467 atomic regions from SNP 84105 to 84705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,473 DEBUG Processing 98/645 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,486 DEBUG Processing 219/1129 atomic regions from SNP 65618 to 66219 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,514 DEBUG Processing 329/889 atomic regions from SNP 98681 to 99281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,523 DEBUG Processing 241/1018 atomic regions from SNP 72180 to 72780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,639 DEBUG Processing 322/852 atomic regions from SNP 96559 to 97159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,660 DEBUG Processing 282/467 atomic regions from SNP 84405 to 85005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:42,896 DEBUG Processing 99/645 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:42,897 DEBUG Processing 220/1129 atomic regions from SNP 65919 to 66520 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,940 DEBUG Processing 242/1018 atomic regions from SNP 72480 to 73080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,942 DEBUG Processing 330/889 atomic regions from SNP 98981 to 99581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,103 DEBUG Processing 323/852 atomic regions from SNP 96859 to 97459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,109 DEBUG Processing 283/467 atomic regions from SNP 84705 to 85305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,344 DEBUG Processing 100/645 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,365 DEBUG Processing 221/1129 atomic regions from SNP 66220 to 66821 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,374 DEBUG Processing 331/889 atomic regions from SNP 99281 to 99881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,413 DEBUG Processing 243/1018 atomic regions from SNP 72780 to 73380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,511 DEBUG Processing 324/852 atomic regions from SNP 97159 to 97759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,513 DEBUG Processing 284/467 atomic regions from SNP 85005 to 85605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,670 DEBUG Processing 101/645 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:43,747 DEBUG Processing 222/1129 atomic regions from SNP 66521 to 67122 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,755 DEBUG Processing 332/889 atomic regions from SNP 99581 to 100181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,821 DEBUG Processing 244/1018 atomic regions from SNP 73080 to 73680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,917 DEBUG Processing 285/467 atomic regions from SNP 85305 to 85905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:43,941 DEBUG Processing 325/852 atomic regions from SNP 97459 to 98059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,101 DEBUG Processing 102/645 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,126 DEBUG Processing 333/889 atomic regions from SNP 99881 to 100481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,153 DEBUG Processing 223/1129 atomic regions from SNP 66822 to 67423 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,176 DEBUG Processing 245/1018 atomic regions from SNP 73380 to 73980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,334 DEBUG Processing 286/467 atomic regions from SNP 85605 to 86205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,370 DEBUG Processing 326/852 atomic regions from SNP 97759 to 98359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,552 DEBUG Processing 334/889 atomic regions from SNP 100181 to 100781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,577 DEBUG Processing 103/645 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:44,616 DEBUG Processing 246/1018 atomic regions from SNP 73680 to 74280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,664 DEBUG Processing 224/1129 atomic regions from SNP 67123 to 67724 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,777 DEBUG Processing 287/467 atomic regions from SNP 85905 to 86505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:44,837 DEBUG Processing 327/852 atomic regions from SNP 98059 to 98659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,014 DEBUG Processing 335/889 atomic regions from SNP 100481 to 101081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,069 DEBUG Processing 104/645 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,106 DEBUG Processing 247/1018 atomic regions from SNP 73980 to 74580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,166 DEBUG Processing 225/1129 atomic regions from SNP 67424 to 68025 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,242 DEBUG Processing 288/467 atomic regions from SNP 86205 to 86805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,293 DEBUG Processing 328/852 atomic regions from SNP 98359 to 98959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,506 DEBUG Processing 336/889 atomic regions from SNP 100781 to 101381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,614 DEBUG Processing 105/645 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:45,615 DEBUG Processing 248/1018 atomic regions from SNP 74280 to 74880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,669 DEBUG Processing 226/1129 atomic regions from SNP 67725 to 68326 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,695 DEBUG Processing 289/467 atomic regions from SNP 86505 to 87105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:45,722 DEBUG Processing 329/852 atomic regions from SNP 98659 to 99259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,972 DEBUG Processing 337/889 atomic regions from SNP 101081 to 101681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,121 DEBUG Processing 106/645 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,131 DEBUG Processing 249/1018 atomic regions from SNP 74580 to 75180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,178 DEBUG Processing 227/1129 atomic regions from SNP 68026 to 68627 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,191 DEBUG Processing 290/467 atomic regions from SNP 86805 to 87405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,192 DEBUG Processing 330/852 atomic regions from SNP 98959 to 99559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,434 DEBUG Processing 338/889 atomic regions from SNP 101381 to 101981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,570 DEBUG Processing 107/645 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:46,646 DEBUG Processing 291/467 atomic regions from SNP 87105 to 87705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:46,652 DEBUG Processing 331/852 atomic regions from SNP 99259 to 99859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,654 DEBUG Processing 250/1018 atomic regions from SNP 74880 to 75480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,677 DEBUG Processing 228/1129 atomic regions from SNP 68327 to 68928 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,877 DEBUG Processing 339/889 atomic regions from SNP 101681 to 102281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,028 DEBUG Processing 108/645 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,066 DEBUG Processing 292/467 atomic regions from SNP 87405 to 88005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,092 DEBUG Processing 332/852 atomic regions from SNP 99559 to 100159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,119 DEBUG Processing 251/1018 atomic regions from SNP 75180 to 75780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,144 DEBUG Processing 229/1129 atomic regions from SNP 68628 to 69229 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,176 DEBUG Processing 340/889 atomic regions from SNP 101981 to 102581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,478 DEBUG Processing 109/645 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,482 DEBUG Processing 293/467 atomic regions from SNP 87705 to 88305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,522 DEBUG Processing 333/852 atomic regions from SNP 99859 to 100459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,597 DEBUG Processing 252/1018 atomic regions from SNP 75480 to 76080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,645 DEBUG Processing 341/889 atomic regions from SNP 102281 to 102881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,645 DEBUG Processing 230/1129 atomic regions from SNP 68929 to 69530 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,859 DEBUG Processing 294/467 atomic regions from SNP 88005 to 88605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:47,871 DEBUG Processing 110/645 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:47,952 DEBUG Processing 334/852 atomic regions from SNP 100159 to 100759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,071 DEBUG Processing 253/1018 atomic regions from SNP 75780 to 76380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,129 DEBUG Processing 342/889 atomic regions from SNP 102581 to 103181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,223 DEBUG Processing 231/1129 atomic regions from SNP 69230 to 69831 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,238 DEBUG Processing 295/467 atomic regions from SNP 88305 to 88905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,268 DEBUG Processing 111/645 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,347 DEBUG Processing 335/852 atomic regions from SNP 100459 to 101059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,471 DEBUG Processing 254/1018 atomic regions from SNP 76080 to 76680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,537 DEBUG Processing 343/889 atomic regions from SNP 102881 to 103481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,665 DEBUG Processing 296/467 atomic regions from SNP 88605 to 89205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:48,677 DEBUG Processing 112/645 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:48,703 DEBUG Processing 336/852 atomic regions from SNP 100759 to 101359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,708 DEBUG Processing 232/1129 atomic regions from SNP 69531 to 70132 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,826 DEBUG Processing 255/1018 atomic regions from SNP 76380 to 76980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,924 DEBUG Processing 344/889 atomic regions from SNP 103181 to 103781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,105 DEBUG Processing 297/467 atomic regions from SNP 88905 to 89505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,122 DEBUG Processing 113/645 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,162 DEBUG Processing 337/852 atomic regions from SNP 101059 to 101659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,190 DEBUG Processing 256/1018 atomic regions from SNP 76680 to 77280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,190 DEBUG Processing 233/1129 atomic regions from SNP 69832 to 70433 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,198 DEBUG Processing 345/889 atomic regions from SNP 103481 to 104081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,378 DEBUG Processing 298/467 atomic regions from SNP 89205 to 89805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,456 DEBUG Processing 114/645 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:49,584 DEBUG Processing 338/852 atomic regions from SNP 101359 to 101959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,612 DEBUG Processing 257/1018 atomic regions from SNP 76980 to 77580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,617 DEBUG Processing 346/889 atomic regions from SNP 103781 to 104381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,650 DEBUG Processing 234/1129 atomic regions from SNP 70133 to 70734 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,690 DEBUG Processing 299/467 atomic regions from SNP 89505 to 90105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:49,752 DEBUG Processing 115/645 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,066 DEBUG Processing 339/852 atomic regions from SNP 101659 to 102259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,121 DEBUG Processing 347/889 atomic regions from SNP 104081 to 104681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,123 DEBUG Processing 258/1018 atomic regions from SNP 77280 to 77880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,200 DEBUG Processing 235/1129 atomic regions from SNP 70434 to 71035 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,212 DEBUG Processing 300/467 atomic regions from SNP 89805 to 90405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,235 DEBUG Processing 116/645 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,490 DEBUG Processing 340/852 atomic regions from SNP 101959 to 102559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,543 DEBUG Processing 348/889 atomic regions from SNP 104381 to 104981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,563 DEBUG Processing 259/1018 atomic regions from SNP 77580 to 78180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,612 DEBUG Processing 301/467 atomic regions from SNP 90105 to 90705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:50,638 DEBUG Processing 236/1129 atomic regions from SNP 70735 to 71336 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,646 DEBUG Processing 117/645 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:50,877 DEBUG Processing 341/852 atomic regions from SNP 102259 to 102859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,954 DEBUG Processing 349/889 atomic regions from SNP 104681 to 105281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,985 DEBUG Processing 260/1018 atomic regions from SNP 77880 to 78480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,038 DEBUG Processing 302/467 atomic regions from SNP 90405 to 91005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,068 DEBUG Processing 118/645 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,111 DEBUG Processing 237/1129 atomic regions from SNP 71036 to 71637 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,173 DEBUG Processing 342/852 atomic regions from SNP 102559 to 103159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,205 DEBUG Processing 350/889 atomic regions from SNP 104981 to 105581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,263 DEBUG Processing 261/1018 atomic regions from SNP 78180 to 78780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,336 DEBUG Processing 303/467 atomic regions from SNP 90705 to 91305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,418 DEBUG Processing 119/645 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,526 DEBUG Processing 238/1129 atomic regions from SNP 71337 to 71938 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,545 DEBUG Processing 343/852 atomic regions from SNP 102859 to 103459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,580 DEBUG Processing 351/889 atomic regions from SNP 105281 to 105881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,634 DEBUG Processing 262/1018 atomic regions from SNP 78480 to 79080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,647 DEBUG Processing 304/467 atomic regions from SNP 91005 to 91605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,700 DEBUG Processing 120/645 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:51,824 DEBUG Processing 344/852 atomic regions from SNP 103159 to 103759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,828 DEBUG Processing 239/1129 atomic regions from SNP 71638 to 72239 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,831 DEBUG Processing 352/889 atomic regions from SNP 105581 to 106181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,898 DEBUG Processing 305/467 atomic regions from SNP 91305 to 91905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:51,918 DEBUG Processing 263/1018 atomic regions from SNP 78780 to 79380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,955 DEBUG Processing 121/645 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,070 DEBUG Processing 353/889 atomic regions from SNP 105881 to 106481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,091 DEBUG Processing 345/852 atomic regions from SNP 103459 to 104059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,117 DEBUG Processing 240/1129 atomic regions from SNP 71939 to 72540 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,133 DEBUG Processing 306/467 atomic regions from SNP 91605 to 92205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,187 DEBUG Processing 264/1018 atomic regions from SNP 79080 to 79680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,195 DEBUG Processing 122/645 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,308 DEBUG Processing 354/889 atomic regions from SNP 106181 to 106781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,349 DEBUG Processing 346/852 atomic regions from SNP 103759 to 104359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,365 DEBUG Processing 307/467 atomic regions from SNP 91905 to 92505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,404 DEBUG Processing 241/1129 atomic regions from SNP 72240 to 72841 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,437 DEBUG Processing 123/645 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,450 DEBUG Processing 265/1018 atomic regions from SNP 79380 to 79980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,544 DEBUG Processing 355/889 atomic regions from SNP 106481 to 107081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,590 DEBUG Processing 308/467 atomic regions from SNP 92205 to 92805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,611 DEBUG Processing 347/852 atomic regions from SNP 104059 to 104659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,679 DEBUG Processing 124/645 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,689 DEBUG Processing 242/1129 atomic regions from SNP 72541 to 73142 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,708 DEBUG Processing 266/1018 atomic regions from SNP 79680 to 80280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,805 DEBUG Processing 356/889 atomic regions from SNP 106781 to 107381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,818 DEBUG Processing 309/467 atomic regions from SNP 92505 to 93105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:52,876 DEBUG Processing 348/852 atomic regions from SNP 104359 to 104959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,922 DEBUG Processing 125/645 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:52,963 DEBUG Processing 267/1018 atomic regions from SNP 79980 to 80580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,968 DEBUG Processing 243/1129 atomic regions from SNP 72842 to 73443 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,050 DEBUG Processing 357/889 atomic regions from SNP 107081 to 107681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,053 DEBUG Processing 310/467 atomic regions from SNP 92805 to 93405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,161 DEBUG Processing 349/852 atomic regions from SNP 104659 to 105259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,162 DEBUG Processing 126/645 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,220 DEBUG Processing 268/1018 atomic regions from SNP 80280 to 80880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,251 DEBUG Processing 244/1129 atomic regions from SNP 73143 to 73744 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,298 DEBUG Processing 358/889 atomic regions from SNP 107381 to 107981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,305 DEBUG Processing 311/467 atomic regions from SNP 93105 to 93705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,401 DEBUG Processing 127/645 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,429 DEBUG Processing 350/852 atomic regions from SNP 104959 to 105559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,468 DEBUG Processing 269/1018 atomic regions from SNP 80580 to 81180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,525 DEBUG Processing 245/1129 atomic regions from SNP 73444 to 74045 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,538 DEBUG Processing 359/889 atomic regions from SNP 107681 to 108281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,552 DEBUG Processing 312/467 atomic regions from SNP 93405 to 94005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,647 DEBUG Processing 128/645 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,704 DEBUG Processing 351/852 atomic regions from SNP 105259 to 105859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,716 DEBUG Processing 270/1018 atomic regions from SNP 80880 to 81480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,769 DEBUG Processing 360/889 atomic regions from SNP 107981 to 108581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,801 DEBUG Processing 246/1129 atomic regions from SNP 73745 to 74346 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,806 DEBUG Processing 313/467 atomic regions from SNP 93705 to 94305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:53,890 DEBUG Processing 129/645 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:53,968 DEBUG Processing 352/852 atomic regions from SNP 105559 to 106159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,970 DEBUG Processing 271/1018 atomic regions from SNP 81180 to 81780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,002 DEBUG Processing 361/889 atomic regions from SNP 108281 to 108881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,041 DEBUG Processing 314/467 atomic regions from SNP 94005 to 94605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,078 DEBUG Processing 247/1129 atomic regions from SNP 74046 to 74647 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,142 DEBUG Processing 130/645 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,217 DEBUG Processing 353/852 atomic regions from SNP 105859 to 106459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,230 DEBUG Processing 272/1018 atomic regions from SNP 81480 to 82080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,238 DEBUG Processing 362/889 atomic regions from SNP 108581 to 109181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,275 DEBUG Processing 315/467 atomic regions from SNP 94305 to 94905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,354 DEBUG Processing 248/1129 atomic regions from SNP 74347 to 74948 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,385 DEBUG Processing 131/645 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,474 DEBUG Processing 354/852 atomic regions from SNP 106159 to 106759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,477 DEBUG Processing 363/889 atomic regions from SNP 108881 to 109481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,492 DEBUG Processing 273/1018 atomic regions from SNP 81780 to 82380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,512 DEBUG Processing 316/467 atomic regions from SNP 94605 to 95205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,627 DEBUG Processing 132/645 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,628 DEBUG Processing 249/1129 atomic regions from SNP 74648 to 75249 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,738 DEBUG Processing 355/852 atomic regions from SNP 106459 to 107059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,740 DEBUG Processing 364/889 atomic regions from SNP 109181 to 109781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,759 DEBUG Processing 274/1018 atomic regions from SNP 82080 to 82680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,762 DEBUG Processing 317/467 atomic regions from SNP 94905 to 95505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:54,862 DEBUG Processing 133/645 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:54,900 DEBUG Processing 250/1129 atomic regions from SNP 74949 to 75550 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,996 DEBUG Processing 318/467 atomic regions from SNP 95205 to 95805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,009 DEBUG Processing 356/852 atomic regions from SNP 106759 to 107359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,012 DEBUG Processing 365/889 atomic regions from SNP 109481 to 110081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,028 DEBUG Processing 275/1018 atomic regions from SNP 82380 to 82980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,092 DEBUG Processing 134/645 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,159 DEBUG Processing 251/1129 atomic regions from SNP 75250 to 75851 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,236 DEBUG Processing 319/467 atomic regions from SNP 95505 to 96105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,275 DEBUG Processing 357/852 atomic regions from SNP 107059 to 107659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,288 DEBUG Processing 366/889 atomic regions from SNP 109781 to 110381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,309 DEBUG Processing 276/1018 atomic regions from SNP 82680 to 83280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,334 DEBUG Processing 135/645 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,422 DEBUG Processing 252/1129 atomic regions from SNP 75551 to 76152 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,470 DEBUG Processing 320/467 atomic regions from SNP 95805 to 96405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,536 DEBUG Processing 358/852 atomic regions from SNP 107359 to 107959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,557 DEBUG Processing 367/889 atomic regions from SNP 110081 to 110681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,571 DEBUG Processing 136/645 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,575 DEBUG Processing 277/1018 atomic regions from SNP 82980 to 83580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,687 DEBUG Processing 253/1129 atomic regions from SNP 75852 to 76453 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,701 DEBUG Processing 321/467 atomic regions from SNP 96105 to 96705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,797 DEBUG Processing 359/852 atomic regions from SNP 107659 to 108259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,799 DEBUG Processing 368/889 atomic regions from SNP 110381 to 110981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,815 DEBUG Processing 137/645 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:55,838 DEBUG Processing 278/1018 atomic regions from SNP 83280 to 83880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,952 DEBUG Processing 322/467 atomic regions from SNP 96405 to 97005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:55,961 DEBUG Processing 254/1129 atomic regions from SNP 76153 to 76754 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,035 DEBUG Processing 369/889 atomic regions from SNP 110681 to 111281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,046 DEBUG Processing 360/852 atomic regions from SNP 107959 to 108559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,049 DEBUG Processing 138/645 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,093 DEBUG Processing 279/1018 atomic regions from SNP 83580 to 84180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,178 DEBUG Processing 323/467 atomic regions from SNP 96705 to 97305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,232 DEBUG Processing 255/1129 atomic regions from SNP 76454 to 77055 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,266 DEBUG Processing 370/889 atomic regions from SNP 110981 to 111581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,282 DEBUG Processing 139/645 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,295 DEBUG Processing 361/852 atomic regions from SNP 108259 to 108859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,350 DEBUG Processing 280/1018 atomic regions from SNP 83880 to 84480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,399 DEBUG Processing 324/467 atomic regions from SNP 97005 to 97605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,499 DEBUG Processing 371/889 atomic regions from SNP 111281 to 111881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,504 DEBUG Processing 256/1129 atomic regions from SNP 76755 to 77356 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,516 DEBUG Processing 140/645 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,544 DEBUG Processing 362/852 atomic regions from SNP 108559 to 109159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,610 DEBUG Processing 281/1018 atomic regions from SNP 84180 to 84780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,619 DEBUG Processing 325/467 atomic regions from SNP 97305 to 97905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,729 DEBUG Processing 372/889 atomic regions from SNP 111581 to 112181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,759 DEBUG Processing 141/645 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:56,783 DEBUG Processing 257/1129 atomic regions from SNP 77056 to 77657 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,799 DEBUG Processing 363/852 atomic regions from SNP 108859 to 109459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,838 DEBUG Processing 326/467 atomic regions from SNP 97605 to 98205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:56,865 DEBUG Processing 282/1018 atomic regions from SNP 84480 to 85080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,959 DEBUG Processing 373/889 atomic regions from SNP 111881 to 112481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,998 DEBUG Processing 142/645 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,049 DEBUG Processing 364/852 atomic regions from SNP 109159 to 109759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,056 DEBUG Processing 258/1129 atomic regions from SNP 77357 to 77958 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,058 DEBUG Processing 327/467 atomic regions from SNP 97905 to 98505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,122 DEBUG Processing 283/1018 atomic regions from SNP 84780 to 85380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,200 DEBUG Processing 374/889 atomic regions from SNP 112181 to 112781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,240 DEBUG Processing 143/645 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,282 DEBUG Processing 328/467 atomic regions from SNP 98205 to 98805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,306 DEBUG Processing 365/852 atomic regions from SNP 109459 to 110059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,334 DEBUG Processing 259/1129 atomic regions from SNP 77658 to 78259 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,390 DEBUG Processing 284/1018 atomic regions from SNP 85080 to 85680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,444 DEBUG Processing 375/889 atomic regions from SNP 112481 to 113081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,472 DEBUG Processing 144/645 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,506 DEBUG Processing 329/467 atomic regions from SNP 98505 to 99105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,552 DEBUG Processing 366/852 atomic regions from SNP 109759 to 110359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,604 DEBUG Processing 260/1129 atomic regions from SNP 77959 to 78560 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,663 DEBUG Processing 285/1018 atomic regions from SNP 85380 to 85980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,692 DEBUG Processing 376/889 atomic regions from SNP 112781 to 113381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,710 DEBUG Processing 145/645 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,735 DEBUG Processing 330/467 atomic regions from SNP 98805 to 99405 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:57,808 DEBUG Processing 367/852 atomic regions from SNP 110059 to 110659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,892 DEBUG Processing 261/1129 atomic regions from SNP 78260 to 78861 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,940 DEBUG Processing 286/1018 atomic regions from SNP 85680 to 86280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,942 DEBUG Processing 377/889 atomic regions from SNP 113081 to 113681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,946 DEBUG Processing 146/645 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:57,963 DEBUG Processing 331/467 atomic regions from SNP 99105 to 99705 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,046 DEBUG Processing 368/852 atomic regions from SNP 110359 to 110959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,176 DEBUG Processing 262/1129 atomic regions from SNP 78561 to 79162 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,188 DEBUG Processing 378/889 atomic regions from SNP 113381 to 113981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,191 DEBUG Processing 147/645 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,197 DEBUG Processing 332/467 atomic regions from SNP 99405 to 100005 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,211 DEBUG Processing 287/1018 atomic regions from SNP 85980 to 86580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,283 DEBUG Processing 369/852 atomic regions from SNP 110659 to 111259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,425 DEBUG Processing 333/467 atomic regions from SNP 99705 to 100305 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,426 DEBUG Processing 379/889 atomic regions from SNP 113681 to 114281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,440 DEBUG Processing 148/645 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,462 DEBUG Processing 263/1129 atomic regions from SNP 78862 to 79463 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,475 DEBUG Processing 288/1018 atomic regions from SNP 86280 to 86880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,532 DEBUG Processing 370/852 atomic regions from SNP 110959 to 111559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,647 DEBUG Processing 334/467 atomic regions from SNP 100005 to 100605 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,658 DEBUG Processing 380/889 atomic regions from SNP 113981 to 114581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,676 DEBUG Processing 149/645 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:58,741 DEBUG Processing 289/1018 atomic regions from SNP 86580 to 87180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,742 DEBUG Processing 264/1129 atomic regions from SNP 79163 to 79764 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,785 DEBUG Processing 371/852 atomic regions from SNP 111259 to 111859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,865 DEBUG Processing 335/467 atomic regions from SNP 100305 to 100905 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:58,887 DEBUG Processing 381/889 atomic regions from SNP 114281 to 114881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,902 DEBUG Processing 150/645 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,002 DEBUG Processing 290/1018 atomic regions from SNP 86880 to 87480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,024 DEBUG Processing 265/1129 atomic regions from SNP 79464 to 80065 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,039 DEBUG Processing 372/852 atomic regions from SNP 111559 to 112159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,082 DEBUG Processing 336/467 atomic regions from SNP 100605 to 101205 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,117 DEBUG Processing 382/889 atomic regions from SNP 114581 to 115181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,129 DEBUG Processing 151/645 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,262 DEBUG Processing 291/1018 atomic regions from SNP 87180 to 87780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,303 DEBUG Processing 373/852 atomic regions from SNP 111859 to 112459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,307 DEBUG Processing 337/467 atomic regions from SNP 100905 to 101505 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,309 DEBUG Processing 266/1129 atomic regions from SNP 79765 to 80366 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,352 DEBUG Processing 383/889 atomic regions from SNP 114881 to 115481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,366 DEBUG Processing 152/645 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,530 DEBUG Processing 292/1018 atomic regions from SNP 87480 to 88080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,545 DEBUG Processing 338/467 atomic regions from SNP 101205 to 101805 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,575 DEBUG Processing 374/852 atomic regions from SNP 112159 to 112759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,601 DEBUG Processing 267/1129 atomic regions from SNP 80066 to 80667 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,601 DEBUG Processing 384/889 atomic regions from SNP 115181 to 115781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,614 DEBUG Processing 153/645 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,799 DEBUG Processing 339/467 atomic regions from SNP 101505 to 102105 for chrX (subchromosome 4 of 5). 2025-01-31 09:43:59,801 DEBUG Processing 293/1018 atomic regions from SNP 87780 to 88380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,843 DEBUG Processing 375/852 atomic regions from SNP 112459 to 113059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,853 DEBUG Processing 385/889 atomic regions from SNP 115481 to 116081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,866 DEBUG Processing 154/645 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:43:59,893 DEBUG Processing 268/1129 atomic regions from SNP 80367 to 80968 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,088 DEBUG Processing 340/467 atomic regions from SNP 101805 to 102405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,120 DEBUG Processing 294/1018 atomic regions from SNP 88080 to 88680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,142 DEBUG Processing 376/852 atomic regions from SNP 112759 to 113359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,143 DEBUG Processing 386/889 atomic regions from SNP 115781 to 116381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,152 DEBUG Processing 155/645 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,202 DEBUG Processing 269/1129 atomic regions from SNP 80668 to 81269 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,336 DEBUG Processing 341/467 atomic regions from SNP 102105 to 102705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,394 DEBUG Processing 295/1018 atomic regions from SNP 88380 to 88980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,402 DEBUG Processing 387/889 atomic regions from SNP 116081 to 116681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,413 DEBUG Processing 377/852 atomic regions from SNP 113059 to 113659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,431 DEBUG Processing 156/645 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,518 DEBUG Processing 270/1129 atomic regions from SNP 80969 to 81570 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,683 DEBUG Processing 342/467 atomic regions from SNP 102405 to 103005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:00,745 DEBUG Processing 388/889 atomic regions from SNP 116381 to 116981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,764 DEBUG Processing 296/1018 atomic regions from SNP 88680 to 89280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,782 DEBUG Processing 378/852 atomic regions from SNP 113359 to 113959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,804 DEBUG Processing 157/645 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:00,868 DEBUG Processing 271/1129 atomic regions from SNP 81270 to 81871 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,007 DEBUG Processing 343/467 atomic regions from SNP 102705 to 103305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,070 DEBUG Processing 389/889 atomic regions from SNP 116681 to 117281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,078 DEBUG Processing 158/645 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,082 DEBUG Processing 379/852 atomic regions from SNP 113659 to 114259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,098 DEBUG Processing 297/1018 atomic regions from SNP 88980 to 89580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,170 DEBUG Processing 272/1129 atomic regions from SNP 81571 to 82172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,338 DEBUG Processing 344/467 atomic regions from SNP 103005 to 103605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,372 DEBUG Processing 159/645 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,387 DEBUG Processing 390/889 atomic regions from SNP 116981 to 117581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,396 DEBUG Processing 380/852 atomic regions from SNP 113959 to 114559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,425 DEBUG Processing 298/1018 atomic regions from SNP 89280 to 89880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,461 DEBUG Processing 273/1129 atomic regions from SNP 81872 to 82472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,568 DEBUG Processing 345/467 atomic regions from SNP 103305 to 103905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,623 DEBUG Processing 160/645 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,642 DEBUG Processing 391/889 atomic regions from SNP 117281 to 117881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,659 DEBUG Processing 381/852 atomic regions from SNP 114259 to 114859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,706 DEBUG Processing 299/1018 atomic regions from SNP 89580 to 90180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,747 DEBUG Processing 274/1129 atomic regions from SNP 82172 to 82772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,822 DEBUG Processing 346/467 atomic regions from SNP 103605 to 104205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:01,928 DEBUG Processing 161/645 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:01,941 DEBUG Processing 392/889 atomic regions from SNP 117581 to 118181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,014 DEBUG Processing 382/852 atomic regions from SNP 114559 to 115159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,068 DEBUG Processing 300/1018 atomic regions from SNP 89880 to 90480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,138 DEBUG Processing 275/1129 atomic regions from SNP 82472 to 83072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,156 DEBUG Processing 347/467 atomic regions from SNP 103905 to 104505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,251 DEBUG Processing 162/645 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,292 DEBUG Processing 393/889 atomic regions from SNP 117881 to 118481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,401 DEBUG Processing 383/852 atomic regions from SNP 114859 to 115459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,508 DEBUG Processing 301/1018 atomic regions from SNP 90180 to 90780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,561 DEBUG Processing 348/467 atomic regions from SNP 104205 to 104805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:02,600 DEBUG Processing 276/1129 atomic regions from SNP 82772 to 83372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,639 DEBUG Processing 163/645 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:02,676 DEBUG Processing 394/889 atomic regions from SNP 118181 to 118781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,787 DEBUG Processing 384/852 atomic regions from SNP 115159 to 115759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,943 DEBUG Processing 302/1018 atomic regions from SNP 90480 to 91080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,030 DEBUG Processing 349/467 atomic regions from SNP 104505 to 105105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,085 DEBUG Processing 277/1129 atomic regions from SNP 83072 to 83672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,109 DEBUG Processing 164/645 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,129 DEBUG Processing 395/889 atomic regions from SNP 118481 to 119081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,174 DEBUG Processing 385/852 atomic regions from SNP 115459 to 116059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,241 DEBUG Processing 303/1018 atomic regions from SNP 90780 to 91380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,278 DEBUG Processing 350/467 atomic regions from SNP 104805 to 105405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,387 DEBUG Processing 165/645 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,396 DEBUG Processing 278/1129 atomic regions from SNP 83372 to 83972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,399 DEBUG Processing 396/889 atomic regions from SNP 118781 to 119381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,447 DEBUG Processing 386/852 atomic regions from SNP 115759 to 116359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,500 DEBUG Processing 351/467 atomic regions from SNP 105105 to 105705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,511 DEBUG Processing 304/1018 atomic regions from SNP 91080 to 91680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,727 DEBUG Processing 166/645 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:03,734 DEBUG Processing 397/889 atomic regions from SNP 119081 to 119681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,784 DEBUG Processing 279/1129 atomic regions from SNP 83672 to 84272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,786 DEBUG Processing 387/852 atomic regions from SNP 116059 to 116659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,823 DEBUG Processing 352/467 atomic regions from SNP 105405 to 106005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:03,859 DEBUG Processing 305/1018 atomic regions from SNP 91380 to 91980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,125 DEBUG Processing 167/645 atomic regions from SNP 49966 to 50567 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,164 DEBUG Processing 398/889 atomic regions from SNP 119381 to 119981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,215 DEBUG Processing 388/852 atomic regions from SNP 116359 to 116959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,231 DEBUG Processing 353/467 atomic regions from SNP 105705 to 106305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,238 DEBUG Processing 280/1129 atomic regions from SNP 83972 to 84572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,244 DEBUG Processing 306/1018 atomic regions from SNP 91680 to 92280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,596 DEBUG Processing 168/645 atomic regions from SNP 50267 to 50868 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:04,630 DEBUG Processing 399/889 atomic regions from SNP 119681 to 120281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,735 DEBUG Processing 389/852 atomic regions from SNP 116659 to 117259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,779 DEBUG Processing 354/467 atomic regions from SNP 106005 to 106605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:04,792 DEBUG Processing 281/1129 atomic regions from SNP 84272 to 84872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,802 DEBUG Processing 307/1018 atomic regions from SNP 91980 to 92580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,100 DEBUG Processing 400/889 atomic regions from SNP 119981 to 120581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,104 DEBUG Processing 169/645 atomic regions from SNP 50568 to 51169 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,212 DEBUG Processing 390/852 atomic regions from SNP 116959 to 117559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,341 DEBUG Processing 355/467 atomic regions from SNP 106305 to 106905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,362 DEBUG Processing 308/1018 atomic regions from SNP 92280 to 92880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,414 DEBUG Processing 282/1129 atomic regions from SNP 84572 to 85172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,673 DEBUG Processing 170/645 atomic regions from SNP 50869 to 51470 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:05,707 DEBUG Processing 401/889 atomic regions from SNP 120281 to 120881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,744 DEBUG Processing 391/852 atomic regions from SNP 117259 to 117859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,867 DEBUG Processing 356/467 atomic regions from SNP 106605 to 107205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:05,918 DEBUG Processing 309/1018 atomic regions from SNP 92580 to 93180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,999 DEBUG Processing 283/1129 atomic regions from SNP 84872 to 85472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,277 DEBUG Processing 171/645 atomic regions from SNP 51170 to 51771 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,287 DEBUG Processing 402/889 atomic regions from SNP 120581 to 121181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,368 DEBUG Processing 392/852 atomic regions from SNP 117559 to 118159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,446 DEBUG Processing 357/467 atomic regions from SNP 106905 to 107505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,529 DEBUG Processing 310/1018 atomic regions from SNP 92880 to 93480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,573 DEBUG Processing 284/1129 atomic regions from SNP 85172 to 85772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,600 DEBUG Processing 403/889 atomic regions from SNP 120881 to 121481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,601 DEBUG Processing 172/645 atomic regions from SNP 51471 to 52072 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,727 DEBUG Processing 393/852 atomic regions from SNP 117859 to 118459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,805 DEBUG Processing 358/467 atomic regions from SNP 107205 to 107805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:06,906 DEBUG Processing 311/1018 atomic regions from SNP 93180 to 93780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,930 DEBUG Processing 404/889 atomic regions from SNP 121181 to 121781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,932 DEBUG Processing 173/645 atomic regions from SNP 51772 to 52373 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:06,985 DEBUG Processing 285/1129 atomic regions from SNP 85472 to 86072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,994 DEBUG Processing 394/852 atomic regions from SNP 118159 to 118759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,068 DEBUG Processing 359/467 atomic regions from SNP 107505 to 108105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,380 DEBUG Processing 312/1018 atomic regions from SNP 93480 to 94080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,383 DEBUG Processing 405/889 atomic regions from SNP 121481 to 122081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,403 DEBUG Processing 174/645 atomic regions from SNP 52073 to 52674 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:07,464 DEBUG Processing 395/852 atomic regions from SNP 118459 to 119059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,480 DEBUG Processing 360/467 atomic regions from SNP 107805 to 108405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:07,486 DEBUG Processing 286/1129 atomic regions from SNP 85772 to 86372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,828 DEBUG Processing 406/889 atomic regions from SNP 121781 to 122381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,862 DEBUG Processing 313/1018 atomic regions from SNP 93780 to 94380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,911 DEBUG Processing 175/645 atomic regions from SNP 52374 to 52975 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,062 DEBUG Processing 396/852 atomic regions from SNP 118759 to 119359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,077 DEBUG Processing 361/467 atomic regions from SNP 108105 to 108705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,129 DEBUG Processing 287/1129 atomic regions from SNP 86072 to 86672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,303 DEBUG Processing 407/889 atomic regions from SNP 122081 to 122681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,338 DEBUG Processing 314/1018 atomic regions from SNP 94080 to 94680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,366 DEBUG Processing 176/645 atomic regions from SNP 52675 to 53276 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,572 DEBUG Processing 362/467 atomic regions from SNP 108405 to 109005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,583 DEBUG Processing 397/852 atomic regions from SNP 119059 to 119659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,643 DEBUG Processing 408/889 atomic regions from SNP 122381 to 122981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,644 DEBUG Processing 288/1129 atomic regions from SNP 86372 to 86972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,668 DEBUG Processing 315/1018 atomic regions from SNP 94380 to 94980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,669 DEBUG Processing 177/645 atomic regions from SNP 52976 to 53577 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,811 DEBUG Processing 363/467 atomic regions from SNP 108705 to 109305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:08,847 DEBUG Processing 398/852 atomic regions from SNP 119359 to 119959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,914 DEBUG Processing 409/889 atomic regions from SNP 122681 to 123281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,950 DEBUG Processing 178/645 atomic regions from SNP 53277 to 53878 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:08,968 DEBUG Processing 289/1129 atomic regions from SNP 86672 to 87272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,969 DEBUG Processing 316/1018 atomic regions from SNP 94680 to 95280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,092 DEBUG Processing 364/467 atomic regions from SNP 109005 to 109605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,147 DEBUG Processing 399/852 atomic regions from SNP 119659 to 120259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,282 DEBUG Processing 410/889 atomic regions from SNP 122981 to 123581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,370 DEBUG Processing 179/645 atomic regions from SNP 53578 to 54179 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,397 DEBUG Processing 317/1018 atomic regions from SNP 94980 to 95580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,416 DEBUG Processing 290/1129 atomic regions from SNP 86972 to 87572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,480 DEBUG Processing 365/467 atomic regions from SNP 109305 to 109905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:09,513 DEBUG Processing 400/852 atomic regions from SNP 119959 to 120559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,552 DEBUG Processing 411/889 atomic regions from SNP 123281 to 123881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,883 DEBUG Processing 180/645 atomic regions from SNP 53879 to 54480 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:09,949 DEBUG Processing 318/1018 atomic regions from SNP 95280 to 95880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,015 DEBUG Processing 291/1129 atomic regions from SNP 87272 to 87872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,027 DEBUG Processing 366/467 atomic regions from SNP 109605 to 110205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,047 DEBUG Processing 401/852 atomic regions from SNP 120259 to 120859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,076 DEBUG Processing 412/889 atomic regions from SNP 123581 to 124181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,486 DEBUG Processing 181/645 atomic regions from SNP 54180 to 54781 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:10,563 DEBUG Processing 319/1018 atomic regions from SNP 95580 to 96180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,590 DEBUG Processing 367/467 atomic regions from SNP 109905 to 110505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:10,626 DEBUG Processing 402/852 atomic regions from SNP 120559 to 121159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,677 DEBUG Processing 292/1129 atomic regions from SNP 87572 to 88172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,693 DEBUG Processing 413/889 atomic regions from SNP 123881 to 124481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,952 DEBUG Processing 182/645 atomic regions from SNP 54481 to 55082 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,071 DEBUG Processing 320/1018 atomic regions from SNP 95880 to 96480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,078 DEBUG Processing 368/467 atomic regions from SNP 110205 to 110805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,119 DEBUG Processing 403/852 atomic regions from SNP 120859 to 121459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,145 DEBUG Processing 414/889 atomic regions from SNP 124181 to 124781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,205 DEBUG Processing 293/1129 atomic regions from SNP 87872 to 88472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,406 DEBUG Processing 183/645 atomic regions from SNP 54782 to 55383 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,543 DEBUG Processing 369/467 atomic regions from SNP 110505 to 111105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,573 DEBUG Processing 321/1018 atomic regions from SNP 96180 to 96780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,600 DEBUG Processing 404/852 atomic regions from SNP 121159 to 121759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,600 DEBUG Processing 415/889 atomic regions from SNP 124481 to 125081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,664 DEBUG Processing 294/1129 atomic regions from SNP 88172 to 88772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,686 DEBUG Processing 184/645 atomic regions from SNP 55083 to 55684 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,785 DEBUG Processing 370/467 atomic regions from SNP 110805 to 111405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:11,877 DEBUG Processing 322/1018 atomic regions from SNP 96480 to 97080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,911 DEBUG Processing 416/889 atomic regions from SNP 124781 to 125381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,926 DEBUG Processing 405/852 atomic regions from SNP 121459 to 122059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,033 DEBUG Processing 185/645 atomic regions from SNP 55384 to 55985 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,055 DEBUG Processing 371/467 atomic regions from SNP 111105 to 111705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,055 DEBUG Processing 295/1129 atomic regions from SNP 88472 to 89072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,164 DEBUG Processing 323/1018 atomic regions from SNP 96780 to 97380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,180 DEBUG Processing 417/889 atomic regions from SNP 125081 to 125681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,210 DEBUG Processing 406/852 atomic regions from SNP 121759 to 122359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,441 DEBUG Processing 186/645 atomic regions from SNP 55685 to 56286 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,441 DEBUG Processing 372/467 atomic regions from SNP 111405 to 112005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,505 DEBUG Processing 296/1129 atomic regions from SNP 88772 to 89372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,558 DEBUG Processing 324/1018 atomic regions from SNP 97080 to 97680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,610 DEBUG Processing 418/889 atomic regions from SNP 125381 to 125981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,639 DEBUG Processing 407/852 atomic regions from SNP 122059 to 122659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,705 DEBUG Processing 373/467 atomic regions from SNP 111705 to 112305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:12,757 DEBUG Processing 187/645 atomic regions from SNP 55986 to 56587 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,869 DEBUG Processing 297/1129 atomic regions from SNP 89072 to 89672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,904 DEBUG Processing 325/1018 atomic regions from SNP 97380 to 97980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,905 DEBUG Processing 419/889 atomic regions from SNP 125681 to 126281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,948 DEBUG Processing 408/852 atomic regions from SNP 122359 to 122959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,988 DEBUG Processing 374/467 atomic regions from SNP 112005 to 112605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,074 DEBUG Processing 188/645 atomic regions from SNP 56287 to 56888 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,294 DEBUG Processing 420/889 atomic regions from SNP 125981 to 126581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,318 DEBUG Processing 375/467 atomic regions from SNP 112305 to 112905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,319 DEBUG Processing 409/852 atomic regions from SNP 122659 to 123259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,321 DEBUG Processing 326/1018 atomic regions from SNP 97680 to 98280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,333 DEBUG Processing 298/1129 atomic regions from SNP 89372 to 89972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,422 DEBUG Processing 189/645 atomic regions from SNP 56588 to 57189 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,703 DEBUG Processing 421/889 atomic regions from SNP 126281 to 126881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,710 DEBUG Processing 376/467 atomic regions from SNP 112605 to 113205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,722 DEBUG Processing 410/852 atomic regions from SNP 122959 to 123559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,734 DEBUG Processing 327/1018 atomic regions from SNP 97980 to 98580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,750 DEBUG Processing 190/645 atomic regions from SNP 56889 to 57490 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,782 DEBUG Processing 299/1129 atomic regions from SNP 89672 to 90272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,981 DEBUG Processing 377/467 atomic regions from SNP 112905 to 113505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:13,984 DEBUG Processing 422/889 atomic regions from SNP 126581 to 127181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,017 DEBUG Processing 411/852 atomic regions from SNP 123259 to 123859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,040 DEBUG Processing 328/1018 atomic regions from SNP 98280 to 98880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,047 DEBUG Processing 191/645 atomic regions from SNP 57190 to 57791 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,124 DEBUG Processing 300/1129 atomic regions from SNP 89972 to 90572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,214 DEBUG Processing 378/467 atomic regions from SNP 113205 to 113805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,255 DEBUG Processing 423/889 atomic regions from SNP 126881 to 127481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,278 DEBUG Processing 412/852 atomic regions from SNP 123559 to 124159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,306 DEBUG Processing 192/645 atomic regions from SNP 57491 to 58092 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,314 DEBUG Processing 329/1018 atomic regions from SNP 98580 to 99180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,414 DEBUG Processing 301/1129 atomic regions from SNP 90272 to 90872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,459 DEBUG Processing 379/467 atomic regions from SNP 113505 to 114105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,530 DEBUG Processing 424/889 atomic regions from SNP 127181 to 127781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,541 DEBUG Processing 413/852 atomic regions from SNP 123859 to 124459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,573 DEBUG Processing 193/645 atomic regions from SNP 57792 to 58393 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,604 DEBUG Processing 330/1018 atomic regions from SNP 98880 to 99480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,718 DEBUG Processing 302/1129 atomic regions from SNP 90572 to 91172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,738 DEBUG Processing 380/467 atomic regions from SNP 113805 to 114405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,807 DEBUG Processing 425/889 atomic regions from SNP 127481 to 128081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,819 DEBUG Processing 414/852 atomic regions from SNP 124159 to 124759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,830 DEBUG Processing 194/645 atomic regions from SNP 58093 to 58694 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,884 DEBUG Processing 331/1018 atomic regions from SNP 99180 to 99780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,977 DEBUG Processing 381/467 atomic regions from SNP 114105 to 114705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:14,996 DEBUG Processing 303/1129 atomic regions from SNP 90872 to 91472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,039 DEBUG Processing 426/889 atomic regions from SNP 127781 to 128381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,077 DEBUG Processing 415/852 atomic regions from SNP 124459 to 125059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,080 DEBUG Processing 195/645 atomic regions from SNP 58394 to 58995 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,146 DEBUG Processing 332/1018 atomic regions from SNP 99480 to 100080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,199 DEBUG Processing 382/467 atomic regions from SNP 114405 to 115005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,273 DEBUG Processing 427/889 atomic regions from SNP 128081 to 128681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,277 DEBUG Processing 304/1129 atomic regions from SNP 91172 to 91772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,332 DEBUG Processing 196/645 atomic regions from SNP 58695 to 59296 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,334 DEBUG Processing 416/852 atomic regions from SNP 124759 to 125359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,402 DEBUG Processing 333/1018 atomic regions from SNP 99780 to 100380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,425 DEBUG Processing 383/467 atomic regions from SNP 114705 to 115305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,509 DEBUG Processing 428/889 atomic regions from SNP 128381 to 128981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,559 DEBUG Processing 305/1129 atomic regions from SNP 91472 to 92072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,576 DEBUG Processing 197/645 atomic regions from SNP 58996 to 59597 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,592 DEBUG Processing 417/852 atomic regions from SNP 125059 to 125659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,654 DEBUG Processing 384/467 atomic regions from SNP 115005 to 115605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,660 DEBUG Processing 334/1018 atomic regions from SNP 100080 to 100680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,748 DEBUG Processing 429/889 atomic regions from SNP 128681 to 129281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,815 DEBUG Processing 198/645 atomic regions from SNP 59297 to 59898 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,839 DEBUG Processing 306/1129 atomic regions from SNP 91772 to 92372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,860 DEBUG Processing 418/852 atomic regions from SNP 125359 to 125959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,875 DEBUG Processing 385/467 atomic regions from SNP 115305 to 115905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:15,921 DEBUG Processing 335/1018 atomic regions from SNP 100380 to 100980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,986 DEBUG Processing 430/889 atomic regions from SNP 128981 to 129581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,052 DEBUG Processing 199/645 atomic regions from SNP 59598 to 60199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,102 DEBUG Processing 386/467 atomic regions from SNP 115605 to 116205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,110 DEBUG Processing 419/852 atomic regions from SNP 125659 to 126259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,120 DEBUG Processing 307/1129 atomic regions from SNP 92072 to 92672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,209 DEBUG Processing 336/1018 atomic regions from SNP 100680 to 101280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,240 DEBUG Processing 431/889 atomic regions from SNP 129281 to 129881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,294 DEBUG Processing 200/645 atomic regions from SNP 59899 to 60500 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,326 DEBUG Processing 387/467 atomic regions from SNP 115905 to 116505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,362 DEBUG Processing 420/852 atomic regions from SNP 125959 to 126559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,400 DEBUG Processing 308/1129 atomic regions from SNP 92372 to 92972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,472 DEBUG Processing 337/1018 atomic regions from SNP 100980 to 101580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,473 DEBUG Processing 432/889 atomic regions from SNP 129581 to 130181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,533 DEBUG Processing 201/645 atomic regions from SNP 60200 to 60801 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,552 DEBUG Processing 388/467 atomic regions from SNP 116205 to 116805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,598 DEBUG Processing 421/852 atomic regions from SNP 126259 to 126859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,677 DEBUG Processing 309/1129 atomic regions from SNP 92672 to 93272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,704 DEBUG Processing 433/889 atomic regions from SNP 129881 to 130481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,726 DEBUG Processing 338/1018 atomic regions from SNP 101280 to 101880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,777 DEBUG Processing 202/645 atomic regions from SNP 60501 to 61102 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,779 DEBUG Processing 389/467 atomic regions from SNP 116505 to 117105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:16,834 DEBUG Processing 422/852 atomic regions from SNP 126559 to 127159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,934 DEBUG Processing 434/889 atomic regions from SNP 130181 to 130781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,949 DEBUG Processing 310/1129 atomic regions from SNP 92972 to 93572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,983 DEBUG Processing 339/1018 atomic regions from SNP 101580 to 102180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,005 DEBUG Processing 390/467 atomic regions from SNP 116805 to 117405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,017 DEBUG Processing 203/645 atomic regions from SNP 60802 to 61403 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,072 DEBUG Processing 423/852 atomic regions from SNP 126859 to 127459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,168 DEBUG Processing 435/889 atomic regions from SNP 130481 to 131081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,226 DEBUG Processing 311/1129 atomic regions from SNP 93272 to 93872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,235 DEBUG Processing 391/467 atomic regions from SNP 117105 to 117705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,246 DEBUG Processing 340/1018 atomic regions from SNP 101880 to 102480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,260 DEBUG Processing 204/645 atomic regions from SNP 61103 to 61704 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,316 DEBUG Processing 424/852 atomic regions from SNP 127159 to 127759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,401 DEBUG Processing 436/889 atomic regions from SNP 130781 to 131381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,466 DEBUG Processing 392/467 atomic regions from SNP 117405 to 118005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,503 DEBUG Processing 205/645 atomic regions from SNP 61404 to 62005 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,507 DEBUG Processing 312/1129 atomic regions from SNP 93572 to 94172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,513 DEBUG Processing 341/1018 atomic regions from SNP 102180 to 102780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,559 DEBUG Processing 425/852 atomic regions from SNP 127459 to 128059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,630 DEBUG Processing 437/889 atomic regions from SNP 131081 to 131681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,695 DEBUG Processing 393/467 atomic regions from SNP 117705 to 118305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,748 DEBUG Processing 206/645 atomic regions from SNP 61705 to 62306 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,778 DEBUG Processing 342/1018 atomic regions from SNP 102480 to 103080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,795 DEBUG Processing 313/1129 atomic regions from SNP 93872 to 94472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,807 DEBUG Processing 426/852 atomic regions from SNP 127759 to 128359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,864 DEBUG Processing 438/889 atomic regions from SNP 131381 to 131981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,917 DEBUG Processing 394/467 atomic regions from SNP 118005 to 118605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:17,990 DEBUG Processing 207/645 atomic regions from SNP 62006 to 62607 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,044 DEBUG Processing 343/1018 atomic regions from SNP 102780 to 103380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,065 DEBUG Processing 427/852 atomic regions from SNP 128059 to 128659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,090 DEBUG Processing 314/1129 atomic regions from SNP 94172 to 94772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,104 DEBUG Processing 439/889 atomic regions from SNP 131681 to 132281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,135 DEBUG Processing 395/467 atomic regions from SNP 118305 to 118905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,221 DEBUG Processing 208/645 atomic regions from SNP 62307 to 62908 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,309 DEBUG Processing 344/1018 atomic regions from SNP 103080 to 103680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,317 DEBUG Processing 428/852 atomic regions from SNP 128359 to 128959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,356 DEBUG Processing 440/889 atomic regions from SNP 131981 to 132581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,365 DEBUG Processing 396/467 atomic regions from SNP 118605 to 119205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,387 DEBUG Processing 315/1129 atomic regions from SNP 94472 to 95072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,456 DEBUG Processing 209/645 atomic regions from SNP 62608 to 63209 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,566 DEBUG Processing 429/852 atomic regions from SNP 128659 to 129259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,577 DEBUG Processing 345/1018 atomic regions from SNP 103380 to 103980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,598 DEBUG Processing 397/467 atomic regions from SNP 118905 to 119505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,601 DEBUG Processing 441/889 atomic regions from SNP 132281 to 132881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,677 DEBUG Processing 316/1129 atomic regions from SNP 94772 to 95372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,688 DEBUG Processing 210/645 atomic regions from SNP 62909 to 63510 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,809 DEBUG Processing 430/852 atomic regions from SNP 128959 to 129559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,834 DEBUG Processing 398/467 atomic regions from SNP 119205 to 119805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:18,844 DEBUG Processing 346/1018 atomic regions from SNP 103680 to 104280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,849 DEBUG Processing 442/889 atomic regions from SNP 132581 to 133181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,924 DEBUG Processing 211/645 atomic regions from SNP 63210 to 63811 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,960 DEBUG Processing 317/1129 atomic regions from SNP 95072 to 95672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,048 DEBUG Processing 431/852 atomic regions from SNP 129259 to 129859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,066 DEBUG Processing 399/467 atomic regions from SNP 119505 to 120105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,095 DEBUG Processing 443/889 atomic regions from SNP 132881 to 133481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,111 DEBUG Processing 347/1018 atomic regions from SNP 103980 to 104580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,161 DEBUG Processing 212/645 atomic regions from SNP 63511 to 64112 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,244 DEBUG Processing 318/1129 atomic regions from SNP 95372 to 95972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,287 DEBUG Processing 400/467 atomic regions from SNP 119805 to 120405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,290 DEBUG Processing 432/852 atomic regions from SNP 129559 to 130159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,334 DEBUG Processing 444/889 atomic regions from SNP 133181 to 133781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,379 DEBUG Processing 348/1018 atomic regions from SNP 104280 to 104880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,397 DEBUG Processing 213/645 atomic regions from SNP 63812 to 64413 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,511 DEBUG Processing 401/467 atomic regions from SNP 120105 to 120705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,531 DEBUG Processing 433/852 atomic regions from SNP 129859 to 130459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,541 DEBUG Processing 319/1129 atomic regions from SNP 95672 to 96272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,570 DEBUG Processing 445/889 atomic regions from SNP 133481 to 134081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,628 DEBUG Processing 214/645 atomic regions from SNP 64113 to 64714 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,637 DEBUG Processing 349/1018 atomic regions from SNP 104580 to 105180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,743 DEBUG Processing 402/467 atomic regions from SNP 120405 to 121005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:19,779 DEBUG Processing 434/852 atomic regions from SNP 130159 to 130759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,810 DEBUG Processing 446/889 atomic regions from SNP 133781 to 134381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,841 DEBUG Processing 320/1129 atomic regions from SNP 95972 to 96572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,861 DEBUG Processing 215/645 atomic regions from SNP 64414 to 65015 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,892 DEBUG Processing 350/1018 atomic regions from SNP 104880 to 105480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,976 DEBUG Processing 403/467 atomic regions from SNP 120705 to 121305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,025 DEBUG Processing 435/852 atomic regions from SNP 130459 to 131059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,050 DEBUG Processing 447/889 atomic regions from SNP 134081 to 134681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,101 DEBUG Processing 216/645 atomic regions from SNP 64715 to 65316 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,133 DEBUG Processing 321/1129 atomic regions from SNP 96272 to 96872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,146 DEBUG Processing 351/1018 atomic regions from SNP 105180 to 105780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,202 DEBUG Processing 404/467 atomic regions from SNP 121005 to 121605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,269 DEBUG Processing 436/852 atomic regions from SNP 130759 to 131359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,293 DEBUG Processing 448/889 atomic regions from SNP 134381 to 134981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,344 DEBUG Processing 217/645 atomic regions from SNP 65016 to 65617 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,407 DEBUG Processing 352/1018 atomic regions from SNP 105480 to 106080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,432 DEBUG Processing 322/1129 atomic regions from SNP 96572 to 97172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,436 DEBUG Processing 405/467 atomic regions from SNP 121305 to 121905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,507 DEBUG Processing 437/852 atomic regions from SNP 131059 to 131659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,529 DEBUG Processing 449/889 atomic regions from SNP 134681 to 135281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,582 DEBUG Processing 218/645 atomic regions from SNP 65317 to 65918 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,673 DEBUG Processing 353/1018 atomic regions from SNP 105780 to 106380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,688 DEBUG Processing 406/467 atomic regions from SNP 121605 to 122205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,728 DEBUG Processing 323/1129 atomic regions from SNP 96872 to 97472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,751 DEBUG Processing 438/852 atomic regions from SNP 131359 to 131959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,784 DEBUG Processing 450/889 atomic regions from SNP 134981 to 135581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,813 DEBUG Processing 219/645 atomic regions from SNP 65618 to 66219 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,917 DEBUG Processing 407/467 atomic regions from SNP 121905 to 122505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:20,943 DEBUG Processing 354/1018 atomic regions from SNP 106080 to 106680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,993 DEBUG Processing 439/852 atomic regions from SNP 131659 to 132259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,035 DEBUG Processing 324/1129 atomic regions from SNP 97172 to 97772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,038 DEBUG Processing 451/889 atomic regions from SNP 135281 to 135881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,049 DEBUG Processing 220/645 atomic regions from SNP 65919 to 66520 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,148 DEBUG Processing 408/467 atomic regions from SNP 122205 to 122805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,207 DEBUG Processing 355/1018 atomic regions from SNP 106380 to 106980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,234 DEBUG Processing 440/852 atomic regions from SNP 131959 to 132559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,288 DEBUG Processing 221/645 atomic regions from SNP 66220 to 66821 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,295 DEBUG Processing 452/889 atomic regions from SNP 135581 to 136181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,338 DEBUG Processing 325/1129 atomic regions from SNP 97472 to 98072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,372 DEBUG Processing 409/467 atomic regions from SNP 122505 to 123105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,469 DEBUG Processing 356/1018 atomic regions from SNP 106680 to 107280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,474 DEBUG Processing 441/852 atomic regions from SNP 132259 to 132859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,528 DEBUG Processing 222/645 atomic regions from SNP 66521 to 67122 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,555 DEBUG Processing 453/889 atomic regions from SNP 135881 to 136481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,596 DEBUG Processing 410/467 atomic regions from SNP 122805 to 123405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,643 DEBUG Processing 326/1129 atomic regions from SNP 97772 to 98372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,713 DEBUG Processing 442/852 atomic regions from SNP 132559 to 133159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,729 DEBUG Processing 357/1018 atomic regions from SNP 106980 to 107580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,761 DEBUG Processing 223/645 atomic regions from SNP 66822 to 67423 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,811 DEBUG Processing 454/889 atomic regions from SNP 136181 to 136781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,821 DEBUG Processing 411/467 atomic regions from SNP 123105 to 123705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:21,939 DEBUG Processing 327/1129 atomic regions from SNP 98072 to 98672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,950 DEBUG Processing 443/852 atomic regions from SNP 132859 to 133459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,986 DEBUG Processing 358/1018 atomic regions from SNP 107280 to 107880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,994 DEBUG Processing 224/645 atomic regions from SNP 67123 to 67724 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,052 DEBUG Processing 412/467 atomic regions from SNP 123405 to 124005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,061 DEBUG Processing 455/889 atomic regions from SNP 136481 to 137081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,189 DEBUG Processing 444/852 atomic regions from SNP 133159 to 133759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,229 DEBUG Processing 225/645 atomic regions from SNP 67424 to 68025 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,231 DEBUG Processing 328/1129 atomic regions from SNP 98372 to 98972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,246 DEBUG Processing 359/1018 atomic regions from SNP 107580 to 108180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,286 DEBUG Processing 413/467 atomic regions from SNP 123705 to 124305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,303 DEBUG Processing 456/889 atomic regions from SNP 136781 to 137381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,429 DEBUG Processing 445/852 atomic regions from SNP 133459 to 134059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,466 DEBUG Processing 226/645 atomic regions from SNP 67725 to 68326 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,509 DEBUG Processing 360/1018 atomic regions from SNP 107880 to 108480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,518 DEBUG Processing 414/467 atomic regions from SNP 124005 to 124605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,527 DEBUG Processing 329/1129 atomic regions from SNP 98672 to 99272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,544 DEBUG Processing 457/889 atomic regions from SNP 137081 to 137681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,669 DEBUG Processing 446/852 atomic regions from SNP 133759 to 134359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,700 DEBUG Processing 227/645 atomic regions from SNP 68026 to 68627 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,747 DEBUG Processing 415/467 atomic regions from SNP 124305 to 124905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:22,772 DEBUG Processing 361/1018 atomic regions from SNP 108180 to 108780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,782 DEBUG Processing 458/889 atomic regions from SNP 137381 to 137981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,812 DEBUG Processing 330/1129 atomic regions from SNP 98972 to 99572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,917 DEBUG Processing 447/852 atomic regions from SNP 134059 to 134659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,941 DEBUG Processing 228/645 atomic regions from SNP 68327 to 68928 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,974 DEBUG Processing 416/467 atomic regions from SNP 124605 to 125205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,019 DEBUG Processing 459/889 atomic regions from SNP 137681 to 138281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,034 DEBUG Processing 362/1018 atomic regions from SNP 108480 to 109080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,077 DEBUG Processing 331/1129 atomic regions from SNP 99272 to 99872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,169 DEBUG Processing 448/852 atomic regions from SNP 134359 to 134959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,187 DEBUG Processing 229/645 atomic regions from SNP 68628 to 69229 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,203 DEBUG Processing 417/467 atomic regions from SNP 124905 to 125505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,286 DEBUG Processing 460/889 atomic regions from SNP 137981 to 138581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,290 DEBUG Processing 363/1018 atomic regions from SNP 108780 to 109380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,343 DEBUG Processing 332/1129 atomic regions from SNP 99572 to 100172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,423 DEBUG Processing 449/852 atomic regions from SNP 134659 to 135259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,435 DEBUG Processing 418/467 atomic regions from SNP 125205 to 125805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,436 DEBUG Processing 230/645 atomic regions from SNP 68929 to 69530 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,548 DEBUG Processing 364/1018 atomic regions from SNP 109080 to 109680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,550 DEBUG Processing 461/889 atomic regions from SNP 138281 to 138881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,607 DEBUG Processing 333/1129 atomic regions from SNP 99872 to 100472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,665 DEBUG Processing 419/467 atomic regions from SNP 125505 to 126105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,677 DEBUG Processing 450/852 atomic regions from SNP 134959 to 135559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,686 DEBUG Processing 231/645 atomic regions from SNP 69230 to 69831 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,805 DEBUG Processing 365/1018 atomic regions from SNP 109380 to 109980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,813 DEBUG Processing 462/889 atomic regions from SNP 138581 to 139181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,877 DEBUG Processing 334/1129 atomic regions from SNP 100172 to 100772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,892 DEBUG Processing 420/467 atomic regions from SNP 125805 to 126405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:23,933 DEBUG Processing 451/852 atomic regions from SNP 135259 to 135859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,935 DEBUG Processing 232/645 atomic regions from SNP 69531 to 70132 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,061 DEBUG Processing 366/1018 atomic regions from SNP 109680 to 110280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,078 DEBUG Processing 463/889 atomic regions from SNP 138881 to 139481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,116 DEBUG Processing 421/467 atomic regions from SNP 126105 to 126705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,154 DEBUG Processing 335/1129 atomic regions from SNP 100472 to 101072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,181 DEBUG Processing 452/852 atomic regions from SNP 135559 to 136159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,185 DEBUG Processing 233/645 atomic regions from SNP 69832 to 70433 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,317 DEBUG Processing 367/1018 atomic regions from SNP 109980 to 110580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,344 DEBUG Processing 422/467 atomic regions from SNP 126405 to 127005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,344 DEBUG Processing 464/889 atomic regions from SNP 139181 to 139781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,434 DEBUG Processing 234/645 atomic regions from SNP 70133 to 70734 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,434 DEBUG Processing 453/852 atomic regions from SNP 135859 to 136459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,440 DEBUG Processing 336/1129 atomic regions from SNP 100772 to 101372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,574 DEBUG Processing 423/467 atomic regions from SNP 126705 to 127305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,579 DEBUG Processing 368/1018 atomic regions from SNP 110280 to 110880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,598 DEBUG Processing 465/889 atomic regions from SNP 139481 to 140081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,683 DEBUG Processing 235/645 atomic regions from SNP 70434 to 71035 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,684 DEBUG Processing 454/852 atomic regions from SNP 136159 to 136759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,729 DEBUG Processing 337/1129 atomic regions from SNP 101072 to 101672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,804 DEBUG Processing 424/467 atomic regions from SNP 127005 to 127605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:24,847 DEBUG Processing 369/1018 atomic regions from SNP 110580 to 111180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,874 DEBUG Processing 466/889 atomic regions from SNP 139781 to 140381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,927 DEBUG Processing 236/645 atomic regions from SNP 70735 to 71336 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,934 DEBUG Processing 455/852 atomic regions from SNP 136459 to 137059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,013 DEBUG Processing 338/1129 atomic regions from SNP 101372 to 101972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,030 DEBUG Processing 425/467 atomic regions from SNP 127305 to 127905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,113 DEBUG Processing 370/1018 atomic regions from SNP 110880 to 111480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,135 DEBUG Processing 467/889 atomic regions from SNP 140081 to 140681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,172 DEBUG Processing 237/645 atomic regions from SNP 71036 to 71637 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,182 DEBUG Processing 456/852 atomic regions from SNP 136759 to 137359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,248 DEBUG Processing 426/467 atomic regions from SNP 127605 to 128205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,289 DEBUG Processing 339/1129 atomic regions from SNP 101672 to 102272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,376 DEBUG Processing 371/1018 atomic regions from SNP 111180 to 111780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,388 DEBUG Processing 468/889 atomic regions from SNP 140381 to 140981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,413 DEBUG Processing 238/645 atomic regions from SNP 71337 to 71938 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,426 DEBUG Processing 457/852 atomic regions from SNP 137059 to 137659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,465 DEBUG Processing 427/467 atomic regions from SNP 127905 to 128505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,562 DEBUG Processing 340/1129 atomic regions from SNP 101972 to 102572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,634 DEBUG Processing 469/889 atomic regions from SNP 140681 to 141281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,640 DEBUG Processing 372/1018 atomic regions from SNP 111480 to 112080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,651 DEBUG Processing 239/645 atomic regions from SNP 71638 to 72239 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,669 DEBUG Processing 458/852 atomic regions from SNP 137359 to 137959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,688 DEBUG Processing 428/467 atomic regions from SNP 128205 to 128805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:25,833 DEBUG Processing 341/1129 atomic regions from SNP 102272 to 102872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,877 DEBUG Processing 470/889 atomic regions from SNP 140981 to 141581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,888 DEBUG Processing 240/645 atomic regions from SNP 71939 to 72540 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,908 DEBUG Processing 373/1018 atomic regions from SNP 111780 to 112380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,910 DEBUG Processing 459/852 atomic regions from SNP 137659 to 138259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,916 DEBUG Processing 429/467 atomic regions from SNP 128505 to 129105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,103 DEBUG Processing 342/1129 atomic regions from SNP 102572 to 103172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,121 DEBUG Processing 471/889 atomic regions from SNP 141281 to 141881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,121 DEBUG Processing 241/645 atomic regions from SNP 72240 to 72841 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,146 DEBUG Processing 430/467 atomic regions from SNP 128805 to 129405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,154 DEBUG Processing 460/852 atomic regions from SNP 137959 to 138559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,173 DEBUG Processing 374/1018 atomic regions from SNP 112080 to 112680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,356 DEBUG Processing 242/645 atomic regions from SNP 72541 to 73142 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,375 DEBUG Processing 431/467 atomic regions from SNP 129105 to 129705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,377 DEBUG Processing 343/1129 atomic regions from SNP 102872 to 103472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,383 DEBUG Processing 472/889 atomic regions from SNP 141581 to 142181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,404 DEBUG Processing 461/852 atomic regions from SNP 138259 to 138859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,442 DEBUG Processing 375/1018 atomic regions from SNP 112380 to 112980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,595 DEBUG Processing 432/467 atomic regions from SNP 129405 to 130005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,604 DEBUG Processing 243/645 atomic regions from SNP 72842 to 73443 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,645 DEBUG Processing 473/889 atomic regions from SNP 141881 to 142481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,649 DEBUG Processing 462/852 atomic regions from SNP 138559 to 139159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,655 DEBUG Processing 344/1129 atomic regions from SNP 103172 to 103772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,709 DEBUG Processing 376/1018 atomic regions from SNP 112680 to 113280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,815 DEBUG Processing 433/467 atomic regions from SNP 129705 to 130305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:26,859 DEBUG Processing 244/645 atomic regions from SNP 73143 to 73744 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,896 DEBUG Processing 463/852 atomic regions from SNP 138859 to 139459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,916 DEBUG Processing 474/889 atomic regions from SNP 142181 to 142781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,942 DEBUG Processing 345/1129 atomic regions from SNP 103472 to 104072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,975 DEBUG Processing 377/1018 atomic regions from SNP 112980 to 113580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,036 DEBUG Processing 434/467 atomic regions from SNP 130005 to 130605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,115 DEBUG Processing 245/645 atomic regions from SNP 73444 to 74045 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,138 DEBUG Processing 464/852 atomic regions from SNP 139159 to 139759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,190 DEBUG Processing 475/889 atomic regions from SNP 142481 to 143081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,240 DEBUG Processing 378/1018 atomic regions from SNP 113280 to 113880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,256 DEBUG Processing 346/1129 atomic regions from SNP 103772 to 104372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,263 DEBUG Processing 435/467 atomic regions from SNP 130305 to 130905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,348 DEBUG Processing 246/645 atomic regions from SNP 73745 to 74346 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,374 DEBUG Processing 465/852 atomic regions from SNP 139459 to 140059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,455 DEBUG Processing 476/889 atomic regions from SNP 142781 to 143381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,487 DEBUG Processing 436/467 atomic regions from SNP 130605 to 131205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,497 DEBUG Processing 379/1018 atomic regions from SNP 113580 to 114180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,561 DEBUG Processing 347/1129 atomic regions from SNP 104072 to 104672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,586 DEBUG Processing 247/645 atomic regions from SNP 74046 to 74647 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,612 DEBUG Processing 466/852 atomic regions from SNP 139759 to 140359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,709 DEBUG Processing 437/467 atomic regions from SNP 130905 to 131505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,721 DEBUG Processing 477/889 atomic regions from SNP 143081 to 143681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,757 DEBUG Processing 380/1018 atomic regions from SNP 113880 to 114480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,831 DEBUG Processing 248/645 atomic regions from SNP 74347 to 74948 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,858 DEBUG Processing 467/852 atomic regions from SNP 140059 to 140659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,874 DEBUG Processing 348/1129 atomic regions from SNP 104372 to 104972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,928 DEBUG Processing 438/467 atomic regions from SNP 131205 to 131805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:27,987 DEBUG Processing 478/889 atomic regions from SNP 143381 to 143981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,020 DEBUG Processing 381/1018 atomic regions from SNP 114180 to 114780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,078 DEBUG Processing 249/645 atomic regions from SNP 74648 to 75249 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,107 DEBUG Processing 468/852 atomic regions from SNP 140359 to 140959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,161 DEBUG Processing 439/467 atomic regions from SNP 131505 to 132105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,190 DEBUG Processing 349/1129 atomic regions from SNP 104672 to 105272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,263 DEBUG Processing 479/889 atomic regions from SNP 143681 to 144281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,282 DEBUG Processing 382/1018 atomic regions from SNP 114480 to 115080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,321 DEBUG Processing 250/645 atomic regions from SNP 74949 to 75550 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,355 DEBUG Processing 469/852 atomic regions from SNP 140659 to 141259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,385 DEBUG Processing 440/467 atomic regions from SNP 131805 to 132405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,471 DEBUG Processing 350/1129 atomic regions from SNP 104972 to 105572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,524 DEBUG Processing 480/889 atomic regions from SNP 143981 to 144581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,536 DEBUG Processing 383/1018 atomic regions from SNP 114780 to 115380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,567 DEBUG Processing 251/645 atomic regions from SNP 75250 to 75851 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,609 DEBUG Processing 441/467 atomic regions from SNP 132105 to 132705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,634 DEBUG Processing 470/852 atomic regions from SNP 140959 to 141559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,749 DEBUG Processing 351/1129 atomic regions from SNP 105272 to 105872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,788 DEBUG Processing 481/889 atomic regions from SNP 144281 to 144881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,788 DEBUG Processing 384/1018 atomic regions from SNP 115080 to 115680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,815 DEBUG Processing 252/645 atomic regions from SNP 75551 to 76152 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,833 DEBUG Processing 442/467 atomic regions from SNP 132405 to 133005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:28,915 DEBUG Processing 471/852 atomic regions from SNP 141259 to 141859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,028 DEBUG Processing 352/1129 atomic regions from SNP 105572 to 106172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,049 DEBUG Processing 385/1018 atomic regions from SNP 115380 to 115980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,061 DEBUG Processing 482/889 atomic regions from SNP 144581 to 145181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,067 DEBUG Processing 443/467 atomic regions from SNP 132705 to 133305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,070 DEBUG Processing 253/645 atomic regions from SNP 75852 to 76453 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,168 DEBUG Processing 472/852 atomic regions from SNP 141559 to 142159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,299 DEBUG Processing 444/467 atomic regions from SNP 133005 to 133605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,313 DEBUG Processing 353/1129 atomic regions from SNP 105872 to 106472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,319 DEBUG Processing 386/1018 atomic regions from SNP 115680 to 116280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,322 DEBUG Processing 254/645 atomic regions from SNP 76153 to 76754 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,337 DEBUG Processing 483/889 atomic regions from SNP 144881 to 145481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,416 DEBUG Processing 473/852 atomic regions from SNP 141859 to 142459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,525 DEBUG Processing 445/467 atomic regions from SNP 133305 to 133905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,575 DEBUG Processing 255/645 atomic regions from SNP 76454 to 77055 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,581 DEBUG Processing 387/1018 atomic regions from SNP 115980 to 116580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,604 DEBUG Processing 484/889 atomic regions from SNP 145181 to 145781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,623 DEBUG Processing 354/1129 atomic regions from SNP 106172 to 106772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,668 DEBUG Processing 474/852 atomic regions from SNP 142159 to 142759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,747 DEBUG Processing 446/467 atomic regions from SNP 133605 to 134205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:29,827 DEBUG Processing 256/645 atomic regions from SNP 76755 to 77356 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,835 DEBUG Processing 388/1018 atomic regions from SNP 116280 to 116880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,863 DEBUG Processing 485/889 atomic regions from SNP 145481 to 146081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,924 DEBUG Processing 475/852 atomic regions from SNP 142459 to 143059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,941 DEBUG Processing 355/1129 atomic regions from SNP 106472 to 107072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,977 DEBUG Processing 447/467 atomic regions from SNP 133905 to 134505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,075 DEBUG Processing 257/645 atomic regions from SNP 77056 to 77657 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,093 DEBUG Processing 389/1018 atomic regions from SNP 116580 to 117180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,125 DEBUG Processing 486/889 atomic regions from SNP 145781 to 146381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,177 DEBUG Processing 476/852 atomic regions from SNP 142759 to 143359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,207 DEBUG Processing 448/467 atomic regions from SNP 134205 to 134805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,236 DEBUG Processing 356/1129 atomic regions from SNP 106772 to 107372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,318 DEBUG Processing 258/645 atomic regions from SNP 77357 to 77958 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,356 DEBUG Processing 390/1018 atomic regions from SNP 116880 to 117480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,396 DEBUG Processing 487/889 atomic regions from SNP 146081 to 146681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,426 DEBUG Processing 477/852 atomic regions from SNP 143059 to 143659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,432 DEBUG Processing 449/467 atomic regions from SNP 134505 to 135105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,553 DEBUG Processing 357/1129 atomic regions from SNP 107072 to 107672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,562 DEBUG Processing 259/645 atomic regions from SNP 77658 to 78259 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,619 DEBUG Processing 391/1018 atomic regions from SNP 117180 to 117780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,653 DEBUG Processing 450/467 atomic regions from SNP 134805 to 135405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,661 DEBUG Processing 478/852 atomic regions from SNP 143359 to 143959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,665 DEBUG Processing 488/889 atomic regions from SNP 146381 to 146981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,801 DEBUG Processing 260/645 atomic regions from SNP 77959 to 78560 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,864 DEBUG Processing 358/1129 atomic regions from SNP 107372 to 107972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,879 DEBUG Processing 451/467 atomic regions from SNP 135105 to 135705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:30,884 DEBUG Processing 392/1018 atomic regions from SNP 117480 to 118080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,907 DEBUG Processing 479/852 atomic regions from SNP 143659 to 144259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,934 DEBUG Processing 489/889 atomic regions from SNP 146681 to 147281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,040 DEBUG Processing 261/645 atomic regions from SNP 78260 to 78861 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,104 DEBUG Processing 452/467 atomic regions from SNP 135405 to 136005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,147 DEBUG Processing 393/1018 atomic regions from SNP 117780 to 118380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,152 DEBUG Processing 480/852 atomic regions from SNP 143959 to 144559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,164 DEBUG Processing 359/1129 atomic regions from SNP 107672 to 108272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,208 DEBUG Processing 490/889 atomic regions from SNP 146981 to 147581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,272 DEBUG Processing 262/645 atomic regions from SNP 78561 to 79162 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,320 DEBUG Processing 453/467 atomic regions from SNP 135705 to 136305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,398 DEBUG Processing 481/852 atomic regions from SNP 144259 to 144859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,427 DEBUG Processing 394/1018 atomic regions from SNP 118080 to 118680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,448 DEBUG Processing 360/1129 atomic regions from SNP 107972 to 108572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,472 DEBUG Processing 491/889 atomic regions from SNP 147281 to 147881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,512 DEBUG Processing 263/645 atomic regions from SNP 78862 to 79463 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,535 DEBUG Processing 454/467 atomic regions from SNP 136005 to 136605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,653 DEBUG Processing 482/852 atomic regions from SNP 144559 to 145159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,699 DEBUG Processing 395/1018 atomic regions from SNP 118380 to 118980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,710 DEBUG Processing 492/889 atomic regions from SNP 147581 to 148181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,750 DEBUG Processing 361/1129 atomic regions from SNP 108272 to 108872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,750 DEBUG Processing 264/645 atomic regions from SNP 79163 to 79764 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,757 DEBUG Processing 455/467 atomic regions from SNP 136305 to 136905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,889 DEBUG Processing 483/852 atomic regions from SNP 144859 to 145459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,942 DEBUG Processing 493/889 atomic regions from SNP 147881 to 148481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,968 DEBUG Processing 396/1018 atomic regions from SNP 118680 to 119280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,982 DEBUG Processing 456/467 atomic regions from SNP 136605 to 137205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:31,992 DEBUG Processing 265/645 atomic regions from SNP 79464 to 80065 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,028 DEBUG Processing 362/1129 atomic regions from SNP 108572 to 109172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,127 DEBUG Processing 484/852 atomic regions from SNP 145159 to 145759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,169 DEBUG Processing 494/889 atomic regions from SNP 148181 to 148781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,203 DEBUG Processing 457/467 atomic regions from SNP 136905 to 137505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,231 DEBUG Processing 397/1018 atomic regions from SNP 118980 to 119580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,231 DEBUG Processing 266/645 atomic regions from SNP 79765 to 80366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,309 DEBUG Processing 363/1129 atomic regions from SNP 108872 to 109472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,371 DEBUG Processing 485/852 atomic regions from SNP 145459 to 146059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,399 DEBUG Processing 495/889 atomic regions from SNP 148481 to 149081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,422 DEBUG Processing 458/467 atomic regions from SNP 137205 to 137805 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,474 DEBUG Processing 267/645 atomic regions from SNP 80066 to 80667 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,493 DEBUG Processing 398/1018 atomic regions from SNP 119280 to 119880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,593 DEBUG Processing 364/1129 atomic regions from SNP 109172 to 109772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,620 DEBUG Processing 486/852 atomic regions from SNP 145759 to 146359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,635 DEBUG Processing 496/889 atomic regions from SNP 148781 to 149381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,649 DEBUG Processing 459/467 atomic regions from SNP 137505 to 138105 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,716 DEBUG Processing 268/645 atomic regions from SNP 80367 to 80968 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,756 DEBUG Processing 399/1018 atomic regions from SNP 119580 to 120180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,872 DEBUG Processing 487/852 atomic regions from SNP 146059 to 146659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,875 DEBUG Processing 365/1129 atomic regions from SNP 109472 to 110072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,875 DEBUG Processing 497/889 atomic regions from SNP 149081 to 149681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,880 DEBUG Processing 460/467 atomic regions from SNP 137805 to 138405 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:32,962 DEBUG Processing 269/645 atomic regions from SNP 80668 to 81269 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,014 DEBUG Processing 400/1018 atomic regions from SNP 119880 to 120480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,107 DEBUG Processing 461/467 atomic regions from SNP 138105 to 138705 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,112 DEBUG Processing 498/889 atomic regions from SNP 149381 to 149981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,125 DEBUG Processing 488/852 atomic regions from SNP 146359 to 146959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,164 DEBUG Processing 366/1129 atomic regions from SNP 109772 to 110372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,212 DEBUG Processing 270/645 atomic regions from SNP 80969 to 81570 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,277 DEBUG Processing 401/1018 atomic regions from SNP 120180 to 120780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,336 DEBUG Processing 462/467 atomic regions from SNP 138405 to 139005 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,353 DEBUG Processing 499/889 atomic regions from SNP 149681 to 150281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,378 DEBUG Processing 489/852 atomic regions from SNP 146659 to 147259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,453 DEBUG Processing 367/1129 atomic regions from SNP 110072 to 110672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,463 DEBUG Processing 271/645 atomic regions from SNP 81270 to 81871 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,552 DEBUG Processing 402/1018 atomic regions from SNP 120480 to 121080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,565 DEBUG Processing 463/467 atomic regions from SNP 138705 to 139305 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,592 DEBUG Processing 500/889 atomic regions from SNP 149981 to 150581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,624 DEBUG Processing 490/852 atomic regions from SNP 146959 to 147559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,710 DEBUG Processing 272/645 atomic regions from SNP 81571 to 82172 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,740 DEBUG Processing 368/1129 atomic regions from SNP 110372 to 110972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,796 DEBUG Processing 464/467 atomic regions from SNP 139005 to 139605 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:33,823 DEBUG Processing 403/1018 atomic regions from SNP 120780 to 121380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,831 DEBUG Processing 501/889 atomic regions from SNP 150281 to 150881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,866 DEBUG Processing 491/852 atomic regions from SNP 147259 to 147859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,950 DEBUG Processing 273/645 atomic regions from SNP 81872 to 82473 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,023 DEBUG Processing 465/467 atomic regions from SNP 139305 to 139905 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,026 DEBUG Processing 369/1129 atomic regions from SNP 110672 to 111272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,070 DEBUG Processing 502/889 atomic regions from SNP 150581 to 151181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,109 DEBUG Processing 492/852 atomic regions from SNP 147559 to 148159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,120 DEBUG Processing 404/1018 atomic regions from SNP 121080 to 121680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,188 DEBUG Processing 274/645 atomic regions from SNP 82173 to 82774 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,244 DEBUG Processing 466/467 atomic regions from SNP 139605 to 140205 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,307 DEBUG Processing 503/889 atomic regions from SNP 150881 to 151481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,327 DEBUG Processing 370/1129 atomic regions from SNP 110972 to 111572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,359 DEBUG Processing 493/852 atomic regions from SNP 147859 to 148459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,403 DEBUG Processing 405/1018 atomic regions from SNP 121380 to 121980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,430 DEBUG Processing 275/645 atomic regions from SNP 82474 to 83075 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,460 DEBUG Processing 467/467 atomic regions from SNP 139905 to 140505 for chrX (subchromosome 4 of 5). 2025-01-31 09:44:34,535 DEBUG Processing 504/889 atomic regions from SNP 151181 to 151781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,583 DEBUG Unique SNPs positions in subchromosome 4: 140506 2025-01-31 09:44:34,615 DEBUG Processing 494/852 atomic regions from SNP 148159 to 148759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,632 DEBUG Processing 371/1129 atomic regions from SNP 111272 to 111872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,674 DEBUG Processing 406/1018 atomic regions from SNP 121680 to 122280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,678 DEBUG Processing 276/645 atomic regions from SNP 82775 to 83376 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,763 DEBUG Processing 505/889 atomic regions from SNP 151481 to 152081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,873 DEBUG Processing 495/852 atomic regions from SNP 148459 to 149059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,930 DEBUG Processing 372/1129 atomic regions from SNP 111572 to 112172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,931 DEBUG Processing 277/645 atomic regions from SNP 83076 to 83677 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,944 DEBUG Processing 407/1018 atomic regions from SNP 121980 to 122580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,997 DEBUG Processing 506/889 atomic regions from SNP 151781 to 152381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,120 DEBUG Processing 496/852 atomic regions from SNP 148759 to 149359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,184 DEBUG Processing 278/645 atomic regions from SNP 83377 to 83978 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,206 DEBUG Processing 408/1018 atomic regions from SNP 122280 to 122880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,221 DEBUG Processing 373/1129 atomic regions from SNP 111872 to 112472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,236 DEBUG Processing 507/889 atomic regions from SNP 152081 to 152681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,366 DEBUG Processing 497/852 atomic regions from SNP 149059 to 149659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,435 DEBUG Processing 279/645 atomic regions from SNP 83678 to 84279 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,476 DEBUG Processing 508/889 atomic regions from SNP 152381 to 152981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,480 DEBUG Processing 409/1018 atomic regions from SNP 122580 to 123180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,485 DEBUG Subchromosome time: 132.88142908900045, subchromosome SNPs: 140506 2025-01-31 09:44:35,502 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:44:35,506 DEBUG Processing 374/1129 atomic regions from SNP 112172 to 112772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,612 DEBUG Processing 498/852 atomic regions from SNP 149359 to 149959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,684 DEBUG Processing 280/645 atomic regions from SNP 83979 to 84580 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,728 DEBUG Processing 509/889 atomic regions from SNP 152681 to 153281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,750 DEBUG Processing 410/1018 atomic regions from SNP 122880 to 123480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,785 DEBUG Processing 375/1129 atomic regions from SNP 112472 to 113072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,861 DEBUG Processing 499/852 atomic regions from SNP 149659 to 150259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,931 DEBUG Processing 281/645 atomic regions from SNP 84280 to 84881 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,995 DEBUG Processing 510/889 atomic regions from SNP 152981 to 153581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,022 DEBUG Processing 411/1018 atomic regions from SNP 123180 to 123780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,064 DEBUG Processing 376/1129 atomic regions from SNP 112772 to 113372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,110 DEBUG Processing 500/852 atomic regions from SNP 149959 to 150559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,178 DEBUG Processing 282/645 atomic regions from SNP 84581 to 85182 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,264 DEBUG Processing 511/889 atomic regions from SNP 153281 to 153881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,290 DEBUG Processing 412/1018 atomic regions from SNP 123480 to 124080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,342 DEBUG Processing 377/1129 atomic regions from SNP 113072 to 113672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,362 DEBUG Processing 501/852 atomic regions from SNP 150259 to 150859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,426 DEBUG Processing 283/645 atomic regions from SNP 84882 to 85483 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,537 DEBUG Processing 512/889 atomic regions from SNP 153581 to 154181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,558 DEBUG Processing 413/1018 atomic regions from SNP 123780 to 124380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,626 DEBUG Processing 378/1129 atomic regions from SNP 113372 to 113972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,630 DEBUG Processing 502/852 atomic regions from SNP 150559 to 151159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,678 DEBUG Processing 284/645 atomic regions from SNP 85183 to 85784 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,811 DEBUG Processing 513/889 atomic regions from SNP 153881 to 154481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,844 DEBUG Processing 414/1018 atomic regions from SNP 124080 to 124680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,907 DEBUG Processing 503/852 atomic regions from SNP 150859 to 151459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,918 DEBUG Processing 379/1129 atomic regions from SNP 113672 to 114272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,937 DEBUG Processing 285/645 atomic regions from SNP 85484 to 86085 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,078 DEBUG Processing 514/889 atomic regions from SNP 154181 to 154781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,109 DEBUG Processing 415/1018 atomic regions from SNP 124380 to 124980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,168 DEBUG Processing 504/852 atomic regions from SNP 151159 to 151759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,188 DEBUG Processing 286/645 atomic regions from SNP 85785 to 86386 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,211 DEBUG Processing 380/1129 atomic regions from SNP 113972 to 114572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,340 DEBUG Processing 515/889 atomic regions from SNP 154481 to 155081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,370 DEBUG Processing 416/1018 atomic regions from SNP 124680 to 125280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,427 DEBUG Processing 505/852 atomic regions from SNP 151459 to 152059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,438 DEBUG Processing 287/645 atomic regions from SNP 86086 to 86687 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,497 DEBUG Processing 381/1129 atomic regions from SNP 114272 to 114872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,591 DEBUG Processing 516/889 atomic regions from SNP 154781 to 155381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,643 DEBUG Processing 417/1018 atomic regions from SNP 124980 to 125580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,672 DEBUG Processing 506/852 atomic regions from SNP 151759 to 152359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,683 DEBUG Processing 288/645 atomic regions from SNP 86387 to 86988 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,777 DEBUG Processing 382/1129 atomic regions from SNP 114572 to 115172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,853 DEBUG Processing 517/889 atomic regions from SNP 155081 to 155681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,915 DEBUG Processing 507/852 atomic regions from SNP 152059 to 152659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,916 DEBUG Processing 418/1018 atomic regions from SNP 125280 to 125880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,922 DEBUG Processing 289/645 atomic regions from SNP 86688 to 87289 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,056 DEBUG Processing 383/1129 atomic regions from SNP 114872 to 115472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,118 DEBUG Processing 518/889 atomic regions from SNP 155381 to 155981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,161 DEBUG Processing 508/852 atomic regions from SNP 152359 to 152959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,164 DEBUG Processing 290/645 atomic regions from SNP 86989 to 87590 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,179 DEBUG Processing 419/1018 atomic regions from SNP 125580 to 126180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,343 DEBUG Processing 384/1129 atomic regions from SNP 115172 to 115772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,397 DEBUG Processing 519/889 atomic regions from SNP 155681 to 156281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,406 DEBUG Processing 291/645 atomic regions from SNP 87290 to 87891 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,408 DEBUG Processing 509/852 atomic regions from SNP 152659 to 153259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,436 DEBUG Processing 420/1018 atomic regions from SNP 125880 to 126480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,633 DEBUG Processing 385/1129 atomic regions from SNP 115472 to 116072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,651 DEBUG Processing 292/645 atomic regions from SNP 87591 to 88192 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,657 DEBUG Processing 510/852 atomic regions from SNP 152959 to 153559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,668 DEBUG Processing 520/889 atomic regions from SNP 155981 to 156581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,693 DEBUG Processing 421/1018 atomic regions from SNP 126180 to 126780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,908 DEBUG Processing 293/645 atomic regions from SNP 87892 to 88493 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,911 DEBUG Processing 511/852 atomic regions from SNP 153259 to 153859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,929 DEBUG Processing 386/1129 atomic regions from SNP 115772 to 116372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,941 DEBUG Processing 521/889 atomic regions from SNP 156281 to 156881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,956 DEBUG Processing 422/1018 atomic regions from SNP 126480 to 127080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,154 DEBUG Processing 294/645 atomic regions from SNP 88193 to 88794 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,163 DEBUG Processing 512/852 atomic regions from SNP 153559 to 154159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,215 DEBUG Processing 387/1129 atomic regions from SNP 116072 to 116672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,219 DEBUG Processing 522/889 atomic regions from SNP 156581 to 157181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,227 DEBUG Processing 423/1018 atomic regions from SNP 126780 to 127380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,399 DEBUG Processing 295/645 atomic regions from SNP 88494 to 89095 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,411 DEBUG Processing 513/852 atomic regions from SNP 153859 to 154459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,500 DEBUG Processing 424/1018 atomic regions from SNP 127080 to 127680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,501 DEBUG Processing 388/1129 atomic regions from SNP 116372 to 116972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,502 DEBUG Processing 523/889 atomic regions from SNP 156881 to 157481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,647 DEBUG Processing 296/645 atomic regions from SNP 88795 to 89396 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,662 DEBUG Processing 514/852 atomic regions from SNP 154159 to 154759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,765 DEBUG Processing 425/1018 atomic regions from SNP 127380 to 127980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,768 DEBUG Processing 524/889 atomic regions from SNP 157181 to 157781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,787 DEBUG Processing 389/1129 atomic regions from SNP 116672 to 117272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,891 DEBUG Processing 297/645 atomic regions from SNP 89096 to 89697 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,905 DEBUG Processing 515/852 atomic regions from SNP 154459 to 155059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,022 DEBUG Processing 525/889 atomic regions from SNP 157481 to 158081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,029 DEBUG Processing 426/1018 atomic regions from SNP 127680 to 128280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,073 DEBUG Processing 390/1129 atomic regions from SNP 116972 to 117572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,133 DEBUG Processing 298/645 atomic regions from SNP 89397 to 89998 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,148 DEBUG Processing 516/852 atomic regions from SNP 154759 to 155359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,294 DEBUG Processing 526/889 atomic regions from SNP 157781 to 158381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,299 DEBUG Processing 427/1018 atomic regions from SNP 127980 to 128580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,368 DEBUG Processing 391/1129 atomic regions from SNP 117272 to 117872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,383 DEBUG Processing 299/645 atomic regions from SNP 89698 to 90299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,393 DEBUG Processing 517/852 atomic regions from SNP 155059 to 155659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,556 DEBUG Processing 527/889 atomic regions from SNP 158081 to 158681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,570 DEBUG Processing 428/1018 atomic regions from SNP 128280 to 128880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,634 DEBUG Processing 300/645 atomic regions from SNP 89999 to 90599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,655 DEBUG Processing 518/852 atomic regions from SNP 155359 to 155959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,661 DEBUG Processing 392/1129 atomic regions from SNP 117572 to 118172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,795 DEBUG Processing 528/889 atomic regions from SNP 158381 to 158981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,838 DEBUG Processing 429/1018 atomic regions from SNP 128580 to 129180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,883 DEBUG Processing 301/645 atomic regions from SNP 90299 to 90899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,918 DEBUG Processing 519/852 atomic regions from SNP 155659 to 156259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,946 DEBUG Processing 393/1129 atomic regions from SNP 117872 to 118472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,053 DEBUG Processing 529/889 atomic regions from SNP 158681 to 159281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,096 DEBUG Processing 430/1018 atomic regions from SNP 128880 to 129480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,131 DEBUG Processing 302/645 atomic regions from SNP 90599 to 91199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,169 DEBUG Processing 520/852 atomic regions from SNP 155959 to 156559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,230 DEBUG Processing 394/1129 atomic regions from SNP 118172 to 118772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,310 DEBUG Processing 530/889 atomic regions from SNP 158981 to 159581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,374 DEBUG Processing 303/645 atomic regions from SNP 90899 to 91499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,377 DEBUG Processing 431/1018 atomic regions from SNP 129180 to 129780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,418 DEBUG Processing 521/852 atomic regions from SNP 156259 to 156859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,510 DEBUG Processing 395/1129 atomic regions from SNP 118472 to 119072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,572 DEBUG Processing 531/889 atomic regions from SNP 159281 to 159881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,619 DEBUG Processing 304/645 atomic regions from SNP 91199 to 91799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,647 DEBUG Processing 432/1018 atomic regions from SNP 129480 to 130080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,668 DEBUG Processing 522/852 atomic regions from SNP 156559 to 157159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,792 DEBUG Processing 396/1129 atomic regions from SNP 118772 to 119372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,828 DEBUG Processing 532/889 atomic regions from SNP 159581 to 160181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,866 DEBUG Processing 305/645 atomic regions from SNP 91499 to 92099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,908 DEBUG Processing 433/1018 atomic regions from SNP 129780 to 130380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,921 DEBUG Processing 523/852 atomic regions from SNP 156859 to 157459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,067 DEBUG Processing 533/889 atomic regions from SNP 159881 to 160481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,072 DEBUG Processing 397/1129 atomic regions from SNP 119072 to 119672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,126 DEBUG Processing 306/645 atomic regions from SNP 91799 to 92399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,162 DEBUG Processing 434/1018 atomic regions from SNP 130080 to 130680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,165 DEBUG Processing 524/852 atomic regions from SNP 157159 to 157759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,304 DEBUG Processing 534/889 atomic regions from SNP 160181 to 160781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,355 DEBUG Processing 398/1129 atomic regions from SNP 119372 to 119972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,381 DEBUG Processing 307/645 atomic regions from SNP 92099 to 92699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,418 DEBUG Processing 525/852 atomic regions from SNP 157459 to 158059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,432 DEBUG Processing 435/1018 atomic regions from SNP 130380 to 130980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,541 DEBUG Processing 535/889 atomic regions from SNP 160481 to 161081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,623 DEBUG Processing 308/645 atomic regions from SNP 92399 to 92999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,627 DEBUG Processing 399/1129 atomic regions from SNP 119672 to 120272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,660 DEBUG Processing 526/852 atomic regions from SNP 157759 to 158359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,695 DEBUG Processing 436/1018 atomic regions from SNP 130680 to 131280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,774 DEBUG Processing 536/889 atomic regions from SNP 160781 to 161381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,862 DEBUG Processing 309/645 atomic regions from SNP 92699 to 93299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,899 DEBUG Processing 527/852 atomic regions from SNP 158059 to 158659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,902 DEBUG Processing 400/1129 atomic regions from SNP 119972 to 120572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,975 DEBUG Processing 437/1018 atomic regions from SNP 130980 to 131580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,009 DEBUG Processing 537/889 atomic regions from SNP 161081 to 161681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,097 DEBUG Processing 310/645 atomic regions from SNP 92999 to 93599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,140 DEBUG Processing 528/852 atomic regions from SNP 158359 to 158959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,177 DEBUG Processing 401/1129 atomic regions from SNP 120272 to 120872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,234 DEBUG Processing 438/1018 atomic regions from SNP 131280 to 131880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,245 DEBUG Processing 538/889 atomic regions from SNP 161381 to 161981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,337 DEBUG Processing 311/645 atomic regions from SNP 93299 to 93899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,383 DEBUG Processing 529/852 atomic regions from SNP 158659 to 159259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,461 DEBUG Processing 402/1129 atomic regions from SNP 120572 to 121172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,483 DEBUG Processing 539/889 atomic regions from SNP 161681 to 162281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,494 DEBUG Processing 439/1018 atomic regions from SNP 131580 to 132180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,579 DEBUG Processing 312/645 atomic regions from SNP 93599 to 94199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,628 DEBUG Processing 530/852 atomic regions from SNP 158959 to 159559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,716 DEBUG Processing 540/889 atomic regions from SNP 161981 to 162581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,749 DEBUG Processing 440/1018 atomic regions from SNP 131880 to 132480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,770 DEBUG Processing 403/1129 atomic regions from SNP 120872 to 121472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,817 DEBUG Segmenting atomic regions: 2025-01-31 09:44:43,826 DEBUG Processing 313/645 atomic regions from SNP 93899 to 94499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,878 DEBUG Processing 531/852 atomic regions from SNP 159259 to 159859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,924 DEBUG Processing 1/230 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:43,953 DEBUG Processing 541/889 atomic regions from SNP 162281 to 162881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,011 DEBUG Processing 441/1018 atomic regions from SNP 132180 to 132780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,063 DEBUG Processing 404/1129 atomic regions from SNP 121172 to 121772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,078 DEBUG Processing 314/645 atomic regions from SNP 94199 to 94799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,136 DEBUG Processing 532/852 atomic regions from SNP 159559 to 160159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,168 DEBUG Processing 2/230 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:44,202 DEBUG Processing 542/889 atomic regions from SNP 162581 to 163181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,279 DEBUG Processing 442/1018 atomic regions from SNP 132480 to 133080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,328 DEBUG Processing 315/645 atomic regions from SNP 94499 to 95099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,346 DEBUG Processing 405/1129 atomic regions from SNP 121472 to 122072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,390 DEBUG Processing 533/852 atomic regions from SNP 159859 to 160459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,403 DEBUG Processing 3/230 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:44,455 DEBUG Processing 543/889 atomic regions from SNP 162881 to 163481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,551 DEBUG Processing 443/1018 atomic regions from SNP 132780 to 133380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,574 DEBUG Processing 316/645 atomic regions from SNP 94799 to 95399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,634 DEBUG Processing 4/230 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:44,636 DEBUG Processing 534/852 atomic regions from SNP 160159 to 160759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,639 DEBUG Processing 406/1129 atomic regions from SNP 121772 to 122372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,714 DEBUG Processing 544/889 atomic regions from SNP 163181 to 163781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,818 DEBUG Processing 317/645 atomic regions from SNP 95099 to 95699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,822 DEBUG Processing 444/1018 atomic regions from SNP 133080 to 133680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,863 DEBUG Processing 5/230 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:44,889 DEBUG Processing 535/852 atomic regions from SNP 160459 to 161059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,928 DEBUG Processing 407/1129 atomic regions from SNP 122072 to 122672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,984 DEBUG Processing 545/889 atomic regions from SNP 163481 to 164081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,061 DEBUG Processing 318/645 atomic regions from SNP 95399 to 95999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,097 DEBUG Processing 6/230 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:45,102 DEBUG Processing 445/1018 atomic regions from SNP 133380 to 133980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,136 DEBUG Processing 536/852 atomic regions from SNP 160759 to 161359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,217 DEBUG Processing 408/1129 atomic regions from SNP 122372 to 122972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,259 DEBUG Processing 546/889 atomic regions from SNP 163781 to 164381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,331 DEBUG Processing 319/645 atomic regions from SNP 95699 to 96299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,340 DEBUG Processing 7/230 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:45,382 DEBUG Processing 446/1018 atomic regions from SNP 133680 to 134280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,435 DEBUG Processing 537/852 atomic regions from SNP 161059 to 161659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,500 DEBUG Processing 409/1129 atomic regions from SNP 122672 to 123272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,519 DEBUG Processing 547/889 atomic regions from SNP 164081 to 164681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,572 DEBUG Processing 320/645 atomic regions from SNP 95999 to 96599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,581 DEBUG Processing 8/230 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:45,658 DEBUG Processing 447/1018 atomic regions from SNP 133980 to 134580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,698 DEBUG Processing 538/852 atomic regions from SNP 161359 to 161959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,780 DEBUG Processing 410/1129 atomic regions from SNP 122972 to 123572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,789 DEBUG Processing 548/889 atomic regions from SNP 164381 to 164981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,813 DEBUG Processing 9/230 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:45,817 DEBUG Processing 321/645 atomic regions from SNP 96299 to 96899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,928 DEBUG Processing 448/1018 atomic regions from SNP 134280 to 134880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,963 DEBUG Processing 539/852 atomic regions from SNP 161659 to 162259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,043 DEBUG Processing 549/889 atomic regions from SNP 164681 to 165281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,045 DEBUG Processing 10/230 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:46,063 DEBUG Processing 411/1129 atomic regions from SNP 123272 to 123872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,067 DEBUG Processing 322/645 atomic regions from SNP 96599 to 97199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,195 DEBUG Processing 449/1018 atomic regions from SNP 134580 to 135180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,229 DEBUG Processing 540/852 atomic regions from SNP 161959 to 162559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,276 DEBUG Processing 11/230 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:46,314 DEBUG Processing 550/889 atomic regions from SNP 164981 to 165581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,314 DEBUG Processing 323/645 atomic regions from SNP 96899 to 97499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,344 DEBUG Processing 412/1129 atomic regions from SNP 123572 to 124172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,467 DEBUG Processing 450/1018 atomic regions from SNP 134880 to 135480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,486 DEBUG Processing 541/852 atomic regions from SNP 162259 to 162859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,514 DEBUG Processing 12/230 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:46,558 DEBUG Processing 324/645 atomic regions from SNP 97199 to 97799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,593 DEBUG Processing 551/889 atomic regions from SNP 165281 to 165881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,629 DEBUG Processing 413/1129 atomic regions from SNP 123872 to 124472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,725 DEBUG Processing 542/852 atomic regions from SNP 162559 to 163159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,736 DEBUG Processing 451/1018 atomic regions from SNP 135180 to 135780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,753 DEBUG Processing 13/230 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:46,793 DEBUG Processing 325/645 atomic regions from SNP 97499 to 98099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,866 DEBUG Processing 552/889 atomic regions from SNP 165581 to 166181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,926 DEBUG Processing 414/1129 atomic regions from SNP 124172 to 124772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,969 DEBUG Processing 543/852 atomic regions from SNP 162859 to 163459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,991 DEBUG Processing 14/230 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:47,010 DEBUG Processing 452/1018 atomic regions from SNP 135480 to 136080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,033 DEBUG Processing 326/645 atomic regions from SNP 97799 to 98399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,129 DEBUG Processing 553/889 atomic regions from SNP 165881 to 166481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,214 DEBUG Processing 544/852 atomic regions from SNP 163159 to 163759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,226 DEBUG Processing 15/230 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:47,237 DEBUG Processing 415/1129 atomic regions from SNP 124472 to 125072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,280 DEBUG Processing 453/1018 atomic regions from SNP 135780 to 136380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,289 DEBUG Processing 327/645 atomic regions from SNP 98099 to 98699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,380 DEBUG Processing 554/889 atomic regions from SNP 166181 to 166781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,449 DEBUG Processing 16/230 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:47,460 DEBUG Processing 545/852 atomic regions from SNP 163459 to 164059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,536 DEBUG Processing 454/1018 atomic regions from SNP 136080 to 136680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,548 DEBUG Processing 328/645 atomic regions from SNP 98399 to 98999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,553 DEBUG Processing 416/1129 atomic regions from SNP 124772 to 125372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,648 DEBUG Processing 555/889 atomic regions from SNP 166481 to 167081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,673 DEBUG Processing 17/230 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:47,699 DEBUG Processing 546/852 atomic regions from SNP 163759 to 164359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,788 DEBUG Processing 455/1018 atomic regions from SNP 136380 to 136980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,793 DEBUG Processing 329/645 atomic regions from SNP 98699 to 99299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,867 DEBUG Processing 417/1129 atomic regions from SNP 125072 to 125672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,907 DEBUG Processing 18/230 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:47,927 DEBUG Processing 556/889 atomic regions from SNP 166781 to 167381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,947 DEBUG Processing 547/852 atomic regions from SNP 164059 to 164659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,032 DEBUG Processing 330/645 atomic regions from SNP 98999 to 99599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,041 DEBUG Processing 456/1018 atomic regions from SNP 136680 to 137280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,143 DEBUG Processing 19/230 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:48,183 DEBUG Processing 557/889 atomic regions from SNP 167081 to 167681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,190 DEBUG Processing 418/1129 atomic regions from SNP 125372 to 125972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,199 DEBUG Processing 548/852 atomic regions from SNP 164359 to 164959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,282 DEBUG Processing 331/645 atomic regions from SNP 99299 to 99899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,304 DEBUG Processing 457/1018 atomic regions from SNP 136980 to 137580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,378 DEBUG Processing 20/230 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:48,439 DEBUG Processing 558/889 atomic regions from SNP 167381 to 167981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,456 DEBUG Processing 549/852 atomic regions from SNP 164659 to 165259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,513 DEBUG Processing 419/1129 atomic regions from SNP 125672 to 126272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,537 DEBUG Processing 332/645 atomic regions from SNP 99599 to 100199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,566 DEBUG Processing 458/1018 atomic regions from SNP 137280 to 137880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,598 DEBUG Processing 21/230 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:48,676 DEBUG Processing 559/889 atomic regions from SNP 167681 to 168281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,698 DEBUG Processing 550/852 atomic regions from SNP 164959 to 165559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,791 DEBUG Processing 333/645 atomic regions from SNP 99899 to 100499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,826 DEBUG Processing 22/230 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:48,831 DEBUG Processing 420/1129 atomic regions from SNP 125972 to 126572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,833 DEBUG Processing 459/1018 atomic regions from SNP 137580 to 138180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,919 DEBUG Processing 560/889 atomic regions from SNP 167981 to 168581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,936 DEBUG Processing 551/852 atomic regions from SNP 165259 to 165859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,048 DEBUG Processing 334/645 atomic regions from SNP 100199 to 100799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,063 DEBUG Processing 23/230 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:49,107 DEBUG Processing 460/1018 atomic regions from SNP 137880 to 138480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,156 DEBUG Processing 421/1129 atomic regions from SNP 126272 to 126872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,180 DEBUG Processing 552/852 atomic regions from SNP 165559 to 166159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,191 DEBUG Processing 561/889 atomic regions from SNP 168281 to 168881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,293 DEBUG Processing 24/230 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:49,301 DEBUG Processing 335/645 atomic regions from SNP 100499 to 101099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,377 DEBUG Processing 461/1018 atomic regions from SNP 138180 to 138780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,430 DEBUG Processing 553/852 atomic regions from SNP 165859 to 166459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,456 DEBUG Processing 562/889 atomic regions from SNP 168581 to 169181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,478 DEBUG Processing 422/1129 atomic regions from SNP 126572 to 127172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,513 DEBUG Processing 25/230 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:49,549 DEBUG Processing 336/645 atomic regions from SNP 100799 to 101399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,645 DEBUG Processing 462/1018 atomic regions from SNP 138480 to 139080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,683 DEBUG Processing 554/852 atomic regions from SNP 166159 to 166759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,721 DEBUG Processing 563/889 atomic regions from SNP 168881 to 169481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,731 DEBUG Processing 26/230 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:49,789 DEBUG Processing 423/1129 atomic regions from SNP 126872 to 127472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,797 DEBUG Processing 337/645 atomic regions from SNP 101099 to 101699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,907 DEBUG Processing 463/1018 atomic regions from SNP 138780 to 139380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,935 DEBUG Processing 555/852 atomic regions from SNP 166459 to 167059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,953 DEBUG Processing 27/230 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:49,973 DEBUG Processing 564/889 atomic regions from SNP 169181 to 169781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,057 DEBUG Processing 338/645 atomic regions from SNP 101399 to 101999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,074 DEBUG Processing 424/1129 atomic regions from SNP 127172 to 127772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,171 DEBUG Processing 464/1018 atomic regions from SNP 139080 to 139680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,182 DEBUG Processing 28/230 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:50,191 DEBUG Processing 556/852 atomic regions from SNP 166759 to 167359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,240 DEBUG Processing 565/889 atomic regions from SNP 169481 to 170081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,319 DEBUG Processing 339/645 atomic regions from SNP 101699 to 102299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,358 DEBUG Processing 425/1129 atomic regions from SNP 127472 to 128072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,417 DEBUG Processing 29/230 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:50,439 DEBUG Processing 465/1018 atomic regions from SNP 139380 to 139980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,447 DEBUG Processing 557/852 atomic regions from SNP 167059 to 167659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,516 DEBUG Processing 566/889 atomic regions from SNP 169781 to 170381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,566 DEBUG Processing 340/645 atomic regions from SNP 101999 to 102599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,632 DEBUG Processing 30/230 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:50,634 DEBUG Processing 426/1129 atomic regions from SNP 127772 to 128372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,696 DEBUG Processing 466/1018 atomic regions from SNP 139680 to 140280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,706 DEBUG Processing 558/852 atomic regions from SNP 167359 to 167959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,774 DEBUG Processing 567/889 atomic regions from SNP 170081 to 170681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,812 DEBUG Processing 341/645 atomic regions from SNP 102299 to 102899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,845 DEBUG Processing 31/230 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:50,906 DEBUG Processing 427/1129 atomic regions from SNP 128072 to 128672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,949 DEBUG Processing 467/1018 atomic regions from SNP 139980 to 140580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,978 DEBUG Processing 559/852 atomic regions from SNP 167659 to 168259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,031 DEBUG Processing 568/889 atomic regions from SNP 170381 to 170981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,064 DEBUG Processing 342/645 atomic regions from SNP 102599 to 103199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,066 DEBUG Processing 32/230 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:51,181 DEBUG Processing 428/1129 atomic regions from SNP 128372 to 128972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,203 DEBUG Processing 468/1018 atomic regions from SNP 140280 to 140880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,255 DEBUG Processing 560/852 atomic regions from SNP 167959 to 168559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,296 DEBUG Processing 33/230 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:51,302 DEBUG Processing 569/889 atomic regions from SNP 170681 to 171281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,310 DEBUG Processing 343/645 atomic regions from SNP 102899 to 103499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,456 DEBUG Processing 429/1129 atomic regions from SNP 128672 to 129272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,465 DEBUG Processing 469/1018 atomic regions from SNP 140580 to 141180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,528 DEBUG Processing 34/230 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:51,533 DEBUG Processing 561/852 atomic regions from SNP 168259 to 168859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,562 DEBUG Processing 344/645 atomic regions from SNP 103199 to 103799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,573 DEBUG Processing 570/889 atomic regions from SNP 170981 to 171581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,727 DEBUG Processing 430/1129 atomic regions from SNP 128972 to 129572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,729 DEBUG Processing 470/1018 atomic regions from SNP 140880 to 141480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,756 DEBUG Processing 35/230 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:51,787 DEBUG Processing 562/852 atomic regions from SNP 168559 to 169159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,803 DEBUG Processing 345/645 atomic regions from SNP 103499 to 104099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,850 DEBUG Processing 571/889 atomic regions from SNP 171281 to 171881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,977 DEBUG Processing 36/230 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:51,990 DEBUG Processing 471/1018 atomic regions from SNP 141180 to 141780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,997 DEBUG Processing 431/1129 atomic regions from SNP 129272 to 129872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,031 DEBUG Processing 563/852 atomic regions from SNP 168859 to 169459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,051 DEBUG Processing 346/645 atomic regions from SNP 103799 to 104399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,126 DEBUG Processing 572/889 atomic regions from SNP 171581 to 172181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,200 DEBUG Processing 37/230 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:52,252 DEBUG Processing 472/1018 atomic regions from SNP 141480 to 142080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,273 DEBUG Processing 432/1129 atomic regions from SNP 129572 to 130172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,276 DEBUG Processing 564/852 atomic regions from SNP 169159 to 169759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,299 DEBUG Processing 347/645 atomic regions from SNP 104099 to 104699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,397 DEBUG Processing 573/889 atomic regions from SNP 171881 to 172481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,427 DEBUG Processing 38/230 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:52,512 DEBUG Processing 473/1018 atomic regions from SNP 141780 to 142380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,524 DEBUG Processing 565/852 atomic regions from SNP 169459 to 170059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,551 DEBUG Processing 348/645 atomic regions from SNP 104399 to 104999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,553 DEBUG Processing 433/1129 atomic regions from SNP 129872 to 130472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,655 DEBUG Processing 39/230 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:52,660 DEBUG Processing 574/889 atomic regions from SNP 172181 to 172781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,769 DEBUG Processing 566/852 atomic regions from SNP 169759 to 170359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,769 DEBUG Processing 474/1018 atomic regions from SNP 142080 to 142680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,802 DEBUG Processing 349/645 atomic regions from SNP 104699 to 105299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,836 DEBUG Processing 434/1129 atomic regions from SNP 130172 to 130772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,883 DEBUG Processing 40/230 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:52,907 DEBUG Processing 575/889 atomic regions from SNP 172481 to 173081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,017 DEBUG Processing 567/852 atomic regions from SNP 170059 to 170659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,029 DEBUG Processing 475/1018 atomic regions from SNP 142380 to 142980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,060 DEBUG Processing 350/645 atomic regions from SNP 104999 to 105599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,109 DEBUG Processing 41/230 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:53,125 DEBUG Processing 435/1129 atomic regions from SNP 130472 to 131072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,177 DEBUG Processing 576/889 atomic regions from SNP 172781 to 173381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,260 DEBUG Processing 568/852 atomic regions from SNP 170359 to 170959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,298 DEBUG Processing 476/1018 atomic regions from SNP 142680 to 143280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,309 DEBUG Processing 351/645 atomic regions from SNP 105299 to 105899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,334 DEBUG Processing 42/230 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:53,408 DEBUG Processing 436/1129 atomic regions from SNP 130772 to 131372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,449 DEBUG Processing 577/889 atomic regions from SNP 173081 to 173681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,511 DEBUG Processing 569/852 atomic regions from SNP 170659 to 171259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,552 DEBUG Processing 352/645 atomic regions from SNP 105599 to 106199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,559 DEBUG Processing 43/230 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:53,569 DEBUG Processing 477/1018 atomic regions from SNP 142980 to 143580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,681 DEBUG Processing 437/1129 atomic regions from SNP 131072 to 131672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,716 DEBUG Processing 578/889 atomic regions from SNP 173381 to 173981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,773 DEBUG Processing 570/852 atomic regions from SNP 170959 to 171559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,786 DEBUG Processing 44/230 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:53,795 DEBUG Processing 353/645 atomic regions from SNP 105899 to 106499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,836 DEBUG Processing 478/1018 atomic regions from SNP 143280 to 143880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,957 DEBUG Processing 438/1129 atomic regions from SNP 131372 to 131972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,974 DEBUG Processing 579/889 atomic regions from SNP 173681 to 174281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,018 DEBUG Processing 45/230 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:54,043 DEBUG Processing 571/852 atomic regions from SNP 171259 to 171859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,049 DEBUG Processing 354/645 atomic regions from SNP 106199 to 106799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,113 DEBUG Processing 479/1018 atomic regions from SNP 143580 to 144180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,205 DEBUG Processing 580/889 atomic regions from SNP 173981 to 174581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,237 DEBUG Processing 439/1129 atomic regions from SNP 131672 to 132272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,259 DEBUG Processing 46/230 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:54,294 DEBUG Processing 572/852 atomic regions from SNP 171559 to 172159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,300 DEBUG Processing 355/645 atomic regions from SNP 106499 to 107099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,395 DEBUG Processing 480/1018 atomic regions from SNP 143880 to 144480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,444 DEBUG Processing 581/889 atomic regions from SNP 174281 to 174881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,483 DEBUG Processing 47/230 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:54,519 DEBUG Processing 440/1129 atomic regions from SNP 131972 to 132572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,547 DEBUG Processing 573/852 atomic regions from SNP 171859 to 172459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,557 DEBUG Processing 356/645 atomic regions from SNP 106799 to 107399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,663 DEBUG Processing 481/1018 atomic regions from SNP 144180 to 144780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,682 DEBUG Processing 582/889 atomic regions from SNP 174581 to 175181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,703 DEBUG Processing 48/230 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:54,799 DEBUG Processing 574/852 atomic regions from SNP 172159 to 172759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,815 DEBUG Processing 441/1129 atomic regions from SNP 132272 to 132872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,816 DEBUG Processing 357/645 atomic regions from SNP 107099 to 107699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,922 DEBUG Processing 583/889 atomic regions from SNP 174881 to 175481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,927 DEBUG Processing 49/230 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:54,928 DEBUG Processing 482/1018 atomic regions from SNP 144480 to 145080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,047 DEBUG Processing 575/852 atomic regions from SNP 172459 to 173059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,066 DEBUG Processing 358/645 atomic regions from SNP 107399 to 107999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,104 DEBUG Processing 442/1129 atomic regions from SNP 132572 to 133172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,147 DEBUG Processing 50/230 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:55,158 DEBUG Processing 584/889 atomic regions from SNP 175181 to 175781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,211 DEBUG Processing 483/1018 atomic regions from SNP 144780 to 145380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,293 DEBUG Processing 576/852 atomic regions from SNP 172759 to 173359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,327 DEBUG Processing 359/645 atomic regions from SNP 107699 to 108299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,373 DEBUG Processing 51/230 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:55,383 DEBUG Processing 443/1129 atomic regions from SNP 132872 to 133472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,398 DEBUG Processing 585/889 atomic regions from SNP 175481 to 176081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,513 DEBUG Processing 484/1018 atomic regions from SNP 145080 to 145680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,544 DEBUG Processing 577/852 atomic regions from SNP 173059 to 173659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,596 DEBUG Processing 360/645 atomic regions from SNP 107999 to 108599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,606 DEBUG Processing 52/230 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:55,647 DEBUG Processing 586/889 atomic regions from SNP 175781 to 176381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,672 DEBUG Processing 444/1129 atomic regions from SNP 133172 to 133772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,778 DEBUG Processing 578/852 atomic regions from SNP 173359 to 173959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,808 DEBUG Processing 485/1018 atomic regions from SNP 145380 to 145980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,841 DEBUG Processing 53/230 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:55,869 DEBUG Processing 361/645 atomic regions from SNP 108299 to 108899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,929 DEBUG Processing 587/889 atomic regions from SNP 176081 to 176681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,956 DEBUG Processing 445/1129 atomic regions from SNP 133472 to 134072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,010 DEBUG Processing 579/852 atomic regions from SNP 173659 to 174259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,076 DEBUG Processing 54/230 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:56,095 DEBUG Processing 486/1018 atomic regions from SNP 145680 to 146280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,156 DEBUG Processing 362/645 atomic regions from SNP 108599 to 109199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,206 DEBUG Processing 588/889 atomic regions from SNP 176381 to 176981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,245 DEBUG Processing 446/1129 atomic regions from SNP 133772 to 134372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,249 DEBUG Processing 580/852 atomic regions from SNP 173959 to 174559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,307 DEBUG Processing 55/230 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:56,372 DEBUG Processing 487/1018 atomic regions from SNP 145980 to 146580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,437 DEBUG Processing 363/645 atomic regions from SNP 108899 to 109499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,468 DEBUG Processing 589/889 atomic regions from SNP 176681 to 177281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,487 DEBUG Processing 581/852 atomic regions from SNP 174259 to 174859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,519 DEBUG Processing 447/1129 atomic regions from SNP 134072 to 134672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,532 DEBUG Processing 56/230 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:56,634 DEBUG Processing 488/1018 atomic regions from SNP 146280 to 146880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,702 DEBUG Processing 364/645 atomic regions from SNP 109199 to 109799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,729 DEBUG Processing 582/852 atomic regions from SNP 174559 to 175159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,731 DEBUG Processing 590/889 atomic regions from SNP 176981 to 177581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,757 DEBUG Processing 57/230 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:56,790 DEBUG Processing 448/1129 atomic regions from SNP 134372 to 134972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,889 DEBUG Processing 489/1018 atomic regions from SNP 146580 to 147180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,971 DEBUG Processing 365/645 atomic regions from SNP 109499 to 110099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,978 DEBUG Processing 583/852 atomic regions from SNP 174859 to 175459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,008 DEBUG Processing 58/230 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:57,012 DEBUG Processing 591/889 atomic regions from SNP 177281 to 177881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,065 DEBUG Processing 449/1129 atomic regions from SNP 134672 to 135272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,144 DEBUG Processing 490/1018 atomic regions from SNP 146880 to 147480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,239 DEBUG Processing 59/230 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:57,246 DEBUG Processing 584/852 atomic regions from SNP 175159 to 175759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,251 DEBUG Processing 366/645 atomic regions from SNP 109799 to 110399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,297 DEBUG Processing 592/889 atomic regions from SNP 177581 to 178181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,345 DEBUG Processing 450/1129 atomic regions from SNP 134972 to 135572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,407 DEBUG Processing 491/1018 atomic regions from SNP 147180 to 147780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,463 DEBUG Processing 60/230 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:57,521 DEBUG Processing 585/852 atomic regions from SNP 175459 to 176059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,533 DEBUG Processing 367/645 atomic regions from SNP 110099 to 110699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,585 DEBUG Processing 593/889 atomic regions from SNP 177881 to 178481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,626 DEBUG Processing 451/1129 atomic regions from SNP 135272 to 135872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,673 DEBUG Processing 492/1018 atomic regions from SNP 147480 to 148080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,686 DEBUG Processing 61/230 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:57,763 DEBUG Processing 586/852 atomic regions from SNP 175759 to 176359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,808 DEBUG Processing 368/645 atomic regions from SNP 110399 to 110999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,863 DEBUG Processing 594/889 atomic regions from SNP 178181 to 178781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,904 DEBUG Processing 452/1129 atomic regions from SNP 135572 to 136172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,914 DEBUG Processing 62/230 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:57,946 DEBUG Processing 493/1018 atomic regions from SNP 147780 to 148380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,017 DEBUG Processing 587/852 atomic regions from SNP 176059 to 176659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,068 DEBUG Processing 369/645 atomic regions from SNP 110699 to 111299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,137 DEBUG Processing 595/889 atomic regions from SNP 178481 to 179081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,141 DEBUG Processing 63/230 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:58,178 DEBUG Processing 453/1129 atomic regions from SNP 135872 to 136472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,211 DEBUG Processing 494/1018 atomic regions from SNP 148080 to 148680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,267 DEBUG Processing 588/852 atomic regions from SNP 176359 to 176959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,319 DEBUG Processing 370/645 atomic regions from SNP 110999 to 111599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,365 DEBUG Processing 64/230 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:58,408 DEBUG Processing 596/889 atomic regions from SNP 178781 to 179381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,460 DEBUG Processing 454/1129 atomic regions from SNP 136172 to 136772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,485 DEBUG Processing 495/1018 atomic regions from SNP 148380 to 148980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,545 DEBUG Processing 589/852 atomic regions from SNP 176659 to 177259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,582 DEBUG Processing 371/645 atomic regions from SNP 111299 to 111899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,587 DEBUG Processing 65/230 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:58,664 DEBUG Processing 597/889 atomic regions from SNP 179081 to 179681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,729 DEBUG Processing 455/1129 atomic regions from SNP 136472 to 137072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,752 DEBUG Processing 496/1018 atomic regions from SNP 148680 to 149280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,800 DEBUG Processing 590/852 atomic regions from SNP 176959 to 177559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,814 DEBUG Processing 66/230 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:58,827 DEBUG Processing 372/645 atomic regions from SNP 111599 to 112199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,900 DEBUG Processing 598/889 atomic regions from SNP 179381 to 179981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,005 DEBUG Processing 456/1129 atomic regions from SNP 136772 to 137372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,026 DEBUG Processing 497/1018 atomic regions from SNP 148980 to 149580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,050 DEBUG Processing 67/230 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:59,059 DEBUG Processing 591/852 atomic regions from SNP 177259 to 177859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,093 DEBUG Processing 373/645 atomic regions from SNP 111899 to 112499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,145 DEBUG Processing 599/889 atomic regions from SNP 179681 to 180281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,279 DEBUG Processing 68/230 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:59,280 DEBUG Processing 457/1129 atomic regions from SNP 137072 to 137672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,291 DEBUG Processing 498/1018 atomic regions from SNP 149280 to 149880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,305 DEBUG Processing 592/852 atomic regions from SNP 177559 to 178159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,360 DEBUG Processing 374/645 atomic regions from SNP 112199 to 112799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,392 DEBUG Processing 600/889 atomic regions from SNP 179981 to 180581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,504 DEBUG Processing 69/230 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:59,546 DEBUG Processing 593/852 atomic regions from SNP 177859 to 178459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,555 DEBUG Processing 458/1129 atomic regions from SNP 137372 to 137972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,559 DEBUG Processing 499/1018 atomic regions from SNP 149580 to 150180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,607 DEBUG Processing 375/645 atomic regions from SNP 112499 to 113099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,636 DEBUG Processing 601/889 atomic regions from SNP 180281 to 180881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,723 DEBUG Processing 70/230 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 5 of 5). 2025-01-31 09:44:59,786 DEBUG Processing 594/852 atomic regions from SNP 178159 to 178759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,829 DEBUG Processing 500/1018 atomic regions from SNP 149880 to 150480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,831 DEBUG Processing 459/1129 atomic regions from SNP 137672 to 138272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,863 DEBUG Processing 376/645 atomic regions from SNP 112799 to 113399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,883 DEBUG Processing 602/889 atomic regions from SNP 180581 to 181181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,943 DEBUG Processing 71/230 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:00,024 DEBUG Processing 595/852 atomic regions from SNP 178459 to 179059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,099 DEBUG Processing 501/1018 atomic regions from SNP 150180 to 150780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,116 DEBUG Processing 460/1129 atomic regions from SNP 137972 to 138572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,130 DEBUG Processing 603/889 atomic regions from SNP 180881 to 181481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,134 DEBUG Processing 377/645 atomic regions from SNP 113099 to 113699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,170 DEBUG Processing 72/230 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:00,289 DEBUG Processing 596/852 atomic regions from SNP 178759 to 179359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,362 DEBUG Processing 502/1018 atomic regions from SNP 150480 to 151080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,371 DEBUG Processing 604/889 atomic regions from SNP 181181 to 181781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,392 DEBUG Processing 378/645 atomic regions from SNP 113399 to 113999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,393 DEBUG Processing 461/1129 atomic regions from SNP 138272 to 138872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,395 DEBUG Processing 73/230 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:00,541 DEBUG Processing 597/852 atomic regions from SNP 179059 to 179659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,606 DEBUG Processing 605/889 atomic regions from SNP 181481 to 182081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,615 DEBUG Processing 74/230 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:00,619 DEBUG Processing 503/1018 atomic regions from SNP 150780 to 151380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,662 DEBUG Processing 462/1129 atomic regions from SNP 138572 to 139172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,662 DEBUG Processing 379/645 atomic regions from SNP 113699 to 114299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,815 DEBUG Processing 598/852 atomic regions from SNP 179359 to 179959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,837 DEBUG Processing 75/230 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:00,846 DEBUG Processing 606/889 atomic regions from SNP 181781 to 182381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,879 DEBUG Processing 504/1018 atomic regions from SNP 151080 to 151680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,894 DEBUG Processing 380/645 atomic regions from SNP 113999 to 114599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,935 DEBUG Processing 463/1129 atomic regions from SNP 138872 to 139472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,064 DEBUG Processing 76/230 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:01,089 DEBUG Processing 607/889 atomic regions from SNP 182081 to 182681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,092 DEBUG Processing 599/852 atomic regions from SNP 179659 to 180259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,133 DEBUG Processing 381/645 atomic regions from SNP 114299 to 114899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,141 DEBUG Processing 505/1018 atomic regions from SNP 151380 to 151980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,213 DEBUG Processing 464/1129 atomic regions from SNP 139172 to 139772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,295 DEBUG Processing 77/230 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:01,335 DEBUG Processing 608/889 atomic regions from SNP 182381 to 182981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,368 DEBUG Processing 600/852 atomic regions from SNP 179959 to 180559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,379 DEBUG Processing 382/645 atomic regions from SNP 114599 to 115199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,409 DEBUG Processing 506/1018 atomic regions from SNP 151680 to 152280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,493 DEBUG Processing 465/1129 atomic regions from SNP 139472 to 140072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,542 DEBUG Processing 78/230 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:01,584 DEBUG Processing 609/889 atomic regions from SNP 182681 to 183281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,627 DEBUG Processing 383/645 atomic regions from SNP 114899 to 115499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,640 DEBUG Processing 601/852 atomic regions from SNP 180259 to 180859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,681 DEBUG Processing 507/1018 atomic regions from SNP 151980 to 152580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,776 DEBUG Processing 79/230 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:01,794 DEBUG Processing 466/1129 atomic regions from SNP 139772 to 140372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,834 DEBUG Processing 610/889 atomic regions from SNP 182981 to 183581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,868 DEBUG Processing 384/645 atomic regions from SNP 115199 to 115799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,893 DEBUG Processing 602/852 atomic regions from SNP 180559 to 181159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,947 DEBUG Processing 508/1018 atomic regions from SNP 152280 to 152880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,004 DEBUG Processing 80/230 atomic regions from SNP 23779 to 24379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:02,081 DEBUG Processing 611/889 atomic regions from SNP 183281 to 183881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,091 DEBUG Processing 467/1129 atomic regions from SNP 140072 to 140672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,107 DEBUG Processing 385/645 atomic regions from SNP 115499 to 116099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,155 DEBUG Processing 603/852 atomic regions from SNP 180859 to 181459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,211 DEBUG Processing 509/1018 atomic regions from SNP 152580 to 153180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,228 DEBUG Processing 81/230 atomic regions from SNP 24079 to 24679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:02,325 DEBUG Processing 612/889 atomic regions from SNP 183581 to 184181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,341 DEBUG Processing 386/645 atomic regions from SNP 115799 to 116399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,360 DEBUG Processing 468/1129 atomic regions from SNP 140372 to 140972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,417 DEBUG Processing 604/852 atomic regions from SNP 181159 to 181759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,452 DEBUG Processing 82/230 atomic regions from SNP 24379 to 24979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:02,477 DEBUG Processing 510/1018 atomic regions from SNP 152880 to 153480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,564 DEBUG Processing 613/889 atomic regions from SNP 183881 to 184481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,569 DEBUG Processing 387/645 atomic regions from SNP 116099 to 116699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,625 DEBUG Processing 469/1129 atomic regions from SNP 140672 to 141272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,655 DEBUG Processing 605/852 atomic regions from SNP 181459 to 182059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,674 DEBUG Processing 83/230 atomic regions from SNP 24679 to 25279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:02,747 DEBUG Processing 511/1018 atomic regions from SNP 153180 to 153780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,800 DEBUG Processing 388/645 atomic regions from SNP 116399 to 116999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,802 DEBUG Processing 614/889 atomic regions from SNP 184181 to 184781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,893 DEBUG Processing 606/852 atomic regions from SNP 181759 to 182359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,894 DEBUG Processing 470/1129 atomic regions from SNP 140972 to 141572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,895 DEBUG Processing 84/230 atomic regions from SNP 24979 to 25579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:03,014 DEBUG Processing 512/1018 atomic regions from SNP 153480 to 154080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,029 DEBUG Processing 389/645 atomic regions from SNP 116699 to 117299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,044 DEBUG Processing 615/889 atomic regions from SNP 184481 to 185081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,125 DEBUG Processing 85/230 atomic regions from SNP 25279 to 25879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:03,137 DEBUG Processing 607/852 atomic regions from SNP 182059 to 182659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,171 DEBUG Processing 471/1129 atomic regions from SNP 141272 to 141872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,255 DEBUG Processing 390/645 atomic regions from SNP 116999 to 117599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,279 DEBUG Processing 513/1018 atomic regions from SNP 153780 to 154380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,289 DEBUG Processing 616/889 atomic regions from SNP 184781 to 185381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,359 DEBUG Processing 86/230 atomic regions from SNP 25579 to 26179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:03,380 DEBUG Processing 608/852 atomic regions from SNP 182359 to 182959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,452 DEBUG Processing 472/1129 atomic regions from SNP 141572 to 142172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,483 DEBUG Processing 391/645 atomic regions from SNP 117299 to 117899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,531 DEBUG Processing 617/889 atomic regions from SNP 185081 to 185681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,558 DEBUG Processing 514/1018 atomic regions from SNP 154080 to 154680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,593 DEBUG Processing 87/230 atomic regions from SNP 25879 to 26479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:03,630 DEBUG Processing 609/852 atomic regions from SNP 182659 to 183259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,720 DEBUG Processing 392/645 atomic regions from SNP 117599 to 118199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,734 DEBUG Processing 473/1129 atomic regions from SNP 141872 to 142472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,774 DEBUG Processing 618/889 atomic regions from SNP 185381 to 185981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,825 DEBUG Processing 88/230 atomic regions from SNP 26179 to 26779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:03,835 DEBUG Processing 515/1018 atomic regions from SNP 154380 to 154980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,903 DEBUG Processing 610/852 atomic regions from SNP 182959 to 183559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,962 DEBUG Processing 393/645 atomic regions from SNP 117899 to 118499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,010 DEBUG Processing 474/1129 atomic regions from SNP 142172 to 142772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,015 DEBUG Processing 619/889 atomic regions from SNP 185681 to 186281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,047 DEBUG Processing 89/230 atomic regions from SNP 26479 to 27079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,128 DEBUG Processing 516/1018 atomic regions from SNP 154680 to 155280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,166 DEBUG Processing 611/852 atomic regions from SNP 183259 to 183859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,202 DEBUG Processing 394/645 atomic regions from SNP 118199 to 118799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,265 DEBUG Processing 620/889 atomic regions from SNP 185981 to 186581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,280 DEBUG Processing 90/230 atomic regions from SNP 26779 to 27379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,285 DEBUG Processing 475/1129 atomic regions from SNP 142472 to 143072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,407 DEBUG Processing 612/852 atomic regions from SNP 183559 to 184159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,415 DEBUG Processing 517/1018 atomic regions from SNP 154980 to 155580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,445 DEBUG Processing 395/645 atomic regions from SNP 118499 to 119099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,521 DEBUG Processing 91/230 atomic regions from SNP 27079 to 27679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,521 DEBUG Processing 621/889 atomic regions from SNP 186281 to 186881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,565 DEBUG Processing 476/1129 atomic regions from SNP 142772 to 143372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,648 DEBUG Processing 613/852 atomic regions from SNP 183859 to 184459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,684 DEBUG Processing 396/645 atomic regions from SNP 118799 to 119399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,709 DEBUG Processing 518/1018 atomic regions from SNP 155280 to 155880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,759 DEBUG Processing 92/230 atomic regions from SNP 27379 to 27979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:04,780 DEBUG Processing 622/889 atomic regions from SNP 186581 to 187181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,842 DEBUG Processing 477/1129 atomic regions from SNP 143072 to 143672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,889 DEBUG Processing 614/852 atomic regions from SNP 184159 to 184759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,922 DEBUG Processing 397/645 atomic regions from SNP 119099 to 119699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,996 DEBUG Processing 93/230 atomic regions from SNP 27679 to 28279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,002 DEBUG Processing 519/1018 atomic regions from SNP 155580 to 156180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,038 DEBUG Processing 623/889 atomic regions from SNP 186881 to 187481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,136 DEBUG Processing 615/852 atomic regions from SNP 184459 to 185059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,142 DEBUG Processing 478/1129 atomic regions from SNP 143372 to 143972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,162 DEBUG Processing 398/645 atomic regions from SNP 119399 to 119999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,221 DEBUG Processing 94/230 atomic regions from SNP 27979 to 28579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,282 DEBUG Processing 520/1018 atomic regions from SNP 155880 to 156480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,285 DEBUG Processing 624/889 atomic regions from SNP 187181 to 187781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,385 DEBUG Processing 616/852 atomic regions from SNP 184759 to 185359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,405 DEBUG Processing 399/645 atomic regions from SNP 119699 to 120299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,440 DEBUG Processing 95/230 atomic regions from SNP 28279 to 28879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,445 DEBUG Processing 479/1129 atomic regions from SNP 143672 to 144272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,526 DEBUG Processing 625/889 atomic regions from SNP 187481 to 188081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,569 DEBUG Processing 521/1018 atomic regions from SNP 156180 to 156780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,634 DEBUG Processing 617/852 atomic regions from SNP 185059 to 185659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,652 DEBUG Processing 400/645 atomic regions from SNP 119999 to 120599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,666 DEBUG Processing 96/230 atomic regions from SNP 28579 to 29179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:05,742 DEBUG Processing 480/1129 atomic regions from SNP 143972 to 144572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,766 DEBUG Processing 626/889 atomic regions from SNP 187781 to 188381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,854 DEBUG Processing 522/1018 atomic regions from SNP 156480 to 157080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,879 DEBUG Processing 618/852 atomic regions from SNP 185359 to 185959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,895 DEBUG Processing 401/645 atomic regions from SNP 120299 to 120899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,899 DEBUG Processing 97/230 atomic regions from SNP 28879 to 29479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,006 DEBUG Processing 627/889 atomic regions from SNP 188081 to 188681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,027 DEBUG Processing 481/1129 atomic regions from SNP 144272 to 144872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,121 DEBUG Processing 98/230 atomic regions from SNP 29179 to 29779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,133 DEBUG Processing 619/852 atomic regions from SNP 185659 to 186259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,134 DEBUG Processing 402/645 atomic regions from SNP 120599 to 121199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,155 DEBUG Processing 523/1018 atomic regions from SNP 156780 to 157380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,251 DEBUG Processing 628/889 atomic regions from SNP 188381 to 188981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,307 DEBUG Processing 482/1129 atomic regions from SNP 144572 to 145172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,336 DEBUG Processing 99/230 atomic regions from SNP 29479 to 30079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,370 DEBUG Processing 403/645 atomic regions from SNP 120899 to 121499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,406 DEBUG Processing 620/852 atomic regions from SNP 185959 to 186559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,439 DEBUG Processing 524/1018 atomic regions from SNP 157080 to 157680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,502 DEBUG Processing 629/889 atomic regions from SNP 188681 to 189281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,551 DEBUG Processing 100/230 atomic regions from SNP 29779 to 30379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,602 DEBUG Processing 404/645 atomic regions from SNP 121199 to 121799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,604 DEBUG Processing 483/1129 atomic regions from SNP 144872 to 145472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,684 DEBUG Processing 621/852 atomic regions from SNP 186259 to 186859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,734 DEBUG Processing 525/1018 atomic regions from SNP 157380 to 157980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,760 DEBUG Processing 630/889 atomic regions from SNP 188981 to 189581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,776 DEBUG Processing 101/230 atomic regions from SNP 30079 to 30679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:06,830 DEBUG Processing 405/645 atomic regions from SNP 121499 to 122099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,899 DEBUG Processing 484/1129 atomic regions from SNP 145172 to 145772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,959 DEBUG Processing 622/852 atomic regions from SNP 186559 to 187159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,010 DEBUG Processing 102/230 atomic regions from SNP 30379 to 30979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,014 DEBUG Processing 631/889 atomic regions from SNP 189281 to 189881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,037 DEBUG Processing 526/1018 atomic regions from SNP 157680 to 158280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,083 DEBUG Processing 406/645 atomic regions from SNP 121799 to 122399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,209 DEBUG Processing 485/1129 atomic regions from SNP 145472 to 146072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,235 DEBUG Processing 623/852 atomic regions from SNP 186859 to 187459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,240 DEBUG Processing 103/230 atomic regions from SNP 30679 to 31279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,266 DEBUG Processing 632/889 atomic regions from SNP 189581 to 190181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,314 DEBUG Processing 527/1018 atomic regions from SNP 157980 to 158580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,350 DEBUG Processing 407/645 atomic regions from SNP 122099 to 122699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,464 DEBUG Processing 104/230 atomic regions from SNP 30979 to 31579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,508 DEBUG Processing 624/852 atomic regions from SNP 187159 to 187759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,515 DEBUG Processing 486/1129 atomic regions from SNP 145772 to 146372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,515 DEBUG Processing 633/889 atomic regions from SNP 189881 to 190481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,586 DEBUG Processing 528/1018 atomic regions from SNP 158280 to 158880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,605 DEBUG Processing 408/645 atomic regions from SNP 122399 to 122999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,683 DEBUG Processing 105/230 atomic regions from SNP 31279 to 31879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:07,762 DEBUG Processing 634/889 atomic regions from SNP 190181 to 190781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,782 DEBUG Processing 625/852 atomic regions from SNP 187459 to 188059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,815 DEBUG Processing 487/1129 atomic regions from SNP 146072 to 146672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,852 DEBUG Processing 529/1018 atomic regions from SNP 158580 to 159180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,860 DEBUG Processing 409/645 atomic regions from SNP 122699 to 123299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,908 DEBUG Processing 106/230 atomic regions from SNP 31579 to 32179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,008 DEBUG Processing 635/889 atomic regions from SNP 190481 to 191081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,058 DEBUG Processing 626/852 atomic regions from SNP 187759 to 188359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,096 DEBUG Processing 488/1129 atomic regions from SNP 146372 to 146972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,123 DEBUG Processing 410/645 atomic regions from SNP 122999 to 123599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,125 DEBUG Processing 530/1018 atomic regions from SNP 158880 to 159480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,141 DEBUG Processing 107/230 atomic regions from SNP 31879 to 32479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,242 DEBUG Processing 636/889 atomic regions from SNP 190781 to 191381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,336 DEBUG Processing 627/852 atomic regions from SNP 188059 to 188659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,367 DEBUG Processing 108/230 atomic regions from SNP 32179 to 32779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,395 DEBUG Processing 411/645 atomic regions from SNP 123299 to 123899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,399 DEBUG Processing 531/1018 atomic regions from SNP 159180 to 159780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,405 DEBUG Processing 489/1129 atomic regions from SNP 146672 to 147272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,478 DEBUG Processing 637/889 atomic regions from SNP 191081 to 191681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,587 DEBUG Processing 109/230 atomic regions from SNP 32479 to 33079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,622 DEBUG Processing 628/852 atomic regions from SNP 188359 to 188959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,676 DEBUG Processing 412/645 atomic regions from SNP 123599 to 124199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,680 DEBUG Processing 532/1018 atomic regions from SNP 159480 to 160080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,724 DEBUG Processing 490/1129 atomic regions from SNP 146972 to 147572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,753 DEBUG Processing 638/889 atomic regions from SNP 191381 to 191981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,802 DEBUG Processing 110/230 atomic regions from SNP 32779 to 33379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:08,915 DEBUG Processing 629/852 atomic regions from SNP 188659 to 189259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,947 DEBUG Processing 533/1018 atomic regions from SNP 159780 to 160380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,960 DEBUG Processing 413/645 atomic regions from SNP 123899 to 124499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,018 DEBUG Processing 491/1129 atomic regions from SNP 147272 to 147872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,021 DEBUG Processing 111/230 atomic regions from SNP 33079 to 33679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,030 DEBUG Processing 639/889 atomic regions from SNP 191681 to 192281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,198 DEBUG Processing 630/852 atomic regions from SNP 188959 to 189559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,201 DEBUG Processing 414/645 atomic regions from SNP 124199 to 124799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,206 DEBUG Processing 534/1018 atomic regions from SNP 160080 to 160680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,244 DEBUG Processing 112/230 atomic regions from SNP 33379 to 33979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,299 DEBUG Processing 640/889 atomic regions from SNP 191981 to 192581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,321 DEBUG Processing 492/1129 atomic regions from SNP 147572 to 148172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,460 DEBUG Processing 113/230 atomic regions from SNP 33679 to 34279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,467 DEBUG Processing 415/645 atomic regions from SNP 124499 to 125099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,474 DEBUG Processing 535/1018 atomic regions from SNP 160380 to 160980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,480 DEBUG Processing 631/852 atomic regions from SNP 189259 to 189859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,563 DEBUG Processing 641/889 atomic regions from SNP 192281 to 192881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,638 DEBUG Processing 493/1129 atomic regions from SNP 147872 to 148472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,677 DEBUG Processing 114/230 atomic regions from SNP 33979 to 34579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,727 DEBUG Processing 536/1018 atomic regions from SNP 160680 to 161280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,739 DEBUG Processing 632/852 atomic regions from SNP 189559 to 190159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,739 DEBUG Processing 416/645 atomic regions from SNP 124799 to 125399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,797 DEBUG Processing 642/889 atomic regions from SNP 192581 to 193181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,903 DEBUG Processing 115/230 atomic regions from SNP 34279 to 34879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:09,951 DEBUG Processing 494/1129 atomic regions from SNP 148172 to 148772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,983 DEBUG Processing 537/1018 atomic regions from SNP 160980 to 161580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,988 DEBUG Processing 633/852 atomic regions from SNP 189859 to 190459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,010 DEBUG Processing 417/645 atomic regions from SNP 125099 to 125699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,027 DEBUG Processing 643/889 atomic regions from SNP 192881 to 193481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,133 DEBUG Processing 116/230 atomic regions from SNP 34579 to 35179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,241 DEBUG Processing 538/1018 atomic regions from SNP 161280 to 161880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,249 DEBUG Processing 634/852 atomic regions from SNP 190159 to 190759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,258 DEBUG Processing 644/889 atomic regions from SNP 193181 to 193781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,258 DEBUG Processing 495/1129 atomic regions from SNP 148472 to 149072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,277 DEBUG Processing 418/645 atomic regions from SNP 125399 to 125999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,357 DEBUG Processing 117/230 atomic regions from SNP 34879 to 35479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,497 DEBUG Processing 645/889 atomic regions from SNP 193481 to 194081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,497 DEBUG Processing 635/852 atomic regions from SNP 190459 to 191059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,502 DEBUG Processing 539/1018 atomic regions from SNP 161580 to 162180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,563 DEBUG Processing 419/645 atomic regions from SNP 125699 to 126299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,564 DEBUG Processing 496/1129 atomic regions from SNP 148772 to 149372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,576 DEBUG Processing 118/230 atomic regions from SNP 35179 to 35779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,734 DEBUG Processing 646/889 atomic regions from SNP 193781 to 194381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,736 DEBUG Processing 636/852 atomic regions from SNP 190759 to 191359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,762 DEBUG Processing 540/1018 atomic regions from SNP 161880 to 162480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,792 DEBUG Processing 119/230 atomic regions from SNP 35479 to 36079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:10,841 DEBUG Processing 420/645 atomic regions from SNP 125999 to 126599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,878 DEBUG Processing 497/1129 atomic regions from SNP 149072 to 149672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,969 DEBUG Processing 637/852 atomic regions from SNP 191059 to 191659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,972 DEBUG Processing 647/889 atomic regions from SNP 194081 to 194681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,007 DEBUG Processing 120/230 atomic regions from SNP 35779 to 36379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,021 DEBUG Processing 541/1018 atomic regions from SNP 162180 to 162780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,118 DEBUG Processing 421/645 atomic regions from SNP 126299 to 126899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,198 DEBUG Processing 498/1129 atomic regions from SNP 149372 to 149972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,209 DEBUG Processing 638/852 atomic regions from SNP 191359 to 191959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,214 DEBUG Processing 648/889 atomic regions from SNP 194381 to 194981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,236 DEBUG Processing 121/230 atomic regions from SNP 36079 to 36679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,283 DEBUG Processing 542/1018 atomic regions from SNP 162480 to 163080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,387 DEBUG Processing 422/645 atomic regions from SNP 126599 to 127199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,456 DEBUG Processing 649/889 atomic regions from SNP 194681 to 195281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,465 DEBUG Processing 122/230 atomic regions from SNP 36379 to 36979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,466 DEBUG Processing 639/852 atomic regions from SNP 191659 to 192259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,497 DEBUG Processing 499/1129 atomic regions from SNP 149672 to 150272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,550 DEBUG Processing 543/1018 atomic regions from SNP 162780 to 163380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,663 DEBUG Processing 423/645 atomic regions from SNP 126899 to 127499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,683 DEBUG Processing 123/230 atomic regions from SNP 36679 to 37279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,690 DEBUG Processing 650/889 atomic regions from SNP 194981 to 195581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,725 DEBUG Processing 640/852 atomic regions from SNP 191959 to 192559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,781 DEBUG Processing 500/1129 atomic regions from SNP 149972 to 150572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,813 DEBUG Processing 544/1018 atomic regions from SNP 163080 to 163680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,892 DEBUG Processing 124/230 atomic regions from SNP 36979 to 37579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:11,917 DEBUG Processing 651/889 atomic regions from SNP 195281 to 195881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,929 DEBUG Processing 424/645 atomic regions from SNP 127199 to 127799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,008 DEBUG Processing 641/852 atomic regions from SNP 192259 to 192859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,067 DEBUG Processing 501/1129 atomic regions from SNP 150272 to 150872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,086 DEBUG Processing 545/1018 atomic regions from SNP 163380 to 163980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,113 DEBUG Processing 125/230 atomic regions from SNP 37279 to 37879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,146 DEBUG Processing 652/889 atomic regions from SNP 195581 to 196181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,190 DEBUG Processing 425/645 atomic regions from SNP 127499 to 128099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,289 DEBUG Processing 642/852 atomic regions from SNP 192559 to 193159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,337 DEBUG Processing 126/230 atomic regions from SNP 37579 to 38179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,354 DEBUG Processing 546/1018 atomic regions from SNP 163680 to 164280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,358 DEBUG Processing 502/1129 atomic regions from SNP 150572 to 151172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,382 DEBUG Processing 653/889 atomic regions from SNP 195881 to 196481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,443 DEBUG Processing 426/645 atomic regions from SNP 127799 to 128399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,557 DEBUG Processing 127/230 atomic regions from SNP 37879 to 38479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,559 DEBUG Processing 643/852 atomic regions from SNP 192859 to 193459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,620 DEBUG Processing 547/1018 atomic regions from SNP 163980 to 164580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,626 DEBUG Processing 654/889 atomic regions from SNP 196181 to 196781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,644 DEBUG Processing 503/1129 atomic regions from SNP 150872 to 151472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,695 DEBUG Processing 427/645 atomic regions from SNP 128099 to 128699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,772 DEBUG Processing 128/230 atomic regions from SNP 38179 to 38779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:12,811 DEBUG Processing 644/852 atomic regions from SNP 193159 to 193759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,876 DEBUG Processing 655/889 atomic regions from SNP 196481 to 197081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,891 DEBUG Processing 548/1018 atomic regions from SNP 164280 to 164880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,933 DEBUG Processing 504/1129 atomic regions from SNP 151172 to 151772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,953 DEBUG Processing 428/645 atomic regions from SNP 128399 to 128999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,981 DEBUG Processing 129/230 atomic regions from SNP 38479 to 39079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,057 DEBUG Processing 645/852 atomic regions from SNP 193459 to 194059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,113 DEBUG Processing 656/889 atomic regions from SNP 196781 to 197381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,153 DEBUG Processing 549/1018 atomic regions from SNP 164580 to 165180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,187 DEBUG Processing 429/645 atomic regions from SNP 128699 to 129299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,204 DEBUG Processing 130/230 atomic regions from SNP 38779 to 39379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,210 DEBUG Processing 505/1129 atomic regions from SNP 151472 to 152072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,308 DEBUG Processing 646/852 atomic regions from SNP 193759 to 194359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,346 DEBUG Processing 657/889 atomic regions from SNP 197081 to 197681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,406 DEBUG Processing 550/1018 atomic regions from SNP 164880 to 165480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,420 DEBUG Processing 131/230 atomic regions from SNP 39079 to 39679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,443 DEBUG Processing 430/645 atomic regions from SNP 128999 to 129599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,490 DEBUG Processing 506/1129 atomic regions from SNP 151772 to 152372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,570 DEBUG Processing 647/852 atomic regions from SNP 194059 to 194659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,578 DEBUG Processing 658/889 atomic regions from SNP 197381 to 197981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,638 DEBUG Processing 132/230 atomic regions from SNP 39379 to 39979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,662 DEBUG Processing 551/1018 atomic regions from SNP 165180 to 165780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,721 DEBUG Processing 431/645 atomic regions from SNP 129299 to 129899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,774 DEBUG Processing 507/1129 atomic regions from SNP 152072 to 152672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,811 DEBUG Processing 659/889 atomic regions from SNP 197681 to 198281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,825 DEBUG Processing 648/852 atomic regions from SNP 194359 to 194959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,852 DEBUG Processing 133/230 atomic regions from SNP 39679 to 40279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:13,917 DEBUG Processing 552/1018 atomic regions from SNP 165480 to 166080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,997 DEBUG Processing 432/645 atomic regions from SNP 129599 to 130199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,047 DEBUG Processing 660/889 atomic regions from SNP 197981 to 198581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,070 DEBUG Processing 134/230 atomic regions from SNP 39979 to 40579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,077 DEBUG Processing 508/1129 atomic regions from SNP 152372 to 152972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,082 DEBUG Processing 649/852 atomic regions from SNP 194659 to 195259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,173 DEBUG Processing 553/1018 atomic regions from SNP 165780 to 166380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,249 DEBUG Processing 433/645 atomic regions from SNP 129899 to 130499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,282 DEBUG Processing 661/889 atomic regions from SNP 198281 to 198881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,288 DEBUG Processing 135/230 atomic regions from SNP 40279 to 40879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,348 DEBUG Processing 650/852 atomic regions from SNP 194959 to 195559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,391 DEBUG Processing 509/1129 atomic regions from SNP 152672 to 153272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,430 DEBUG Processing 554/1018 atomic regions from SNP 166080 to 166680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,487 DEBUG Processing 434/645 atomic regions from SNP 130199 to 130799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,503 DEBUG Processing 136/230 atomic regions from SNP 40579 to 41179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,514 DEBUG Processing 662/889 atomic regions from SNP 198581 to 199181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,598 DEBUG Processing 651/852 atomic regions from SNP 195259 to 195859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,684 DEBUG Processing 555/1018 atomic regions from SNP 166380 to 166980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,688 DEBUG Processing 510/1129 atomic regions from SNP 152972 to 153572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,717 DEBUG Processing 137/230 atomic regions from SNP 40879 to 41479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,728 DEBUG Processing 435/645 atomic regions from SNP 130499 to 131099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,748 DEBUG Processing 663/889 atomic regions from SNP 198881 to 199481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,840 DEBUG Processing 652/852 atomic regions from SNP 195559 to 196159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,935 DEBUG Processing 138/230 atomic regions from SNP 41179 to 41779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:14,940 DEBUG Processing 556/1018 atomic regions from SNP 166680 to 167280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,972 DEBUG Processing 436/645 atomic regions from SNP 130799 to 131399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,985 DEBUG Processing 664/889 atomic regions from SNP 199181 to 199781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,992 DEBUG Processing 511/1129 atomic regions from SNP 153272 to 153872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,078 DEBUG Processing 653/852 atomic regions from SNP 195859 to 196459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,155 DEBUG Processing 139/230 atomic regions from SNP 41479 to 42079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,204 DEBUG Processing 557/1018 atomic regions from SNP 166980 to 167580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,226 DEBUG Processing 437/645 atomic regions from SNP 131099 to 131699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,227 DEBUG Processing 665/889 atomic regions from SNP 199481 to 200081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,287 DEBUG Processing 512/1129 atomic regions from SNP 153572 to 154172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,320 DEBUG Processing 654/852 atomic regions from SNP 196159 to 196759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,373 DEBUG Processing 140/230 atomic regions from SNP 41779 to 42379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,467 DEBUG Processing 666/889 atomic regions from SNP 199781 to 200381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,471 DEBUG Processing 558/1018 atomic regions from SNP 167280 to 167880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,487 DEBUG Processing 438/645 atomic regions from SNP 131399 to 131999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,566 DEBUG Processing 655/852 atomic regions from SNP 196459 to 197059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,570 DEBUG Processing 513/1129 atomic regions from SNP 153872 to 154472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,586 DEBUG Processing 141/230 atomic regions from SNP 42079 to 42679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,734 DEBUG Processing 559/1018 atomic regions from SNP 167580 to 168180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,734 DEBUG Processing 667/889 atomic regions from SNP 200081 to 200681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,737 DEBUG Processing 439/645 atomic regions from SNP 131699 to 132299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,800 DEBUG Processing 142/230 atomic regions from SNP 42379 to 42979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:15,813 DEBUG Processing 656/852 atomic regions from SNP 196759 to 197359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,859 DEBUG Processing 514/1129 atomic regions from SNP 154172 to 154772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,993 DEBUG Processing 440/645 atomic regions from SNP 131999 to 132599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,996 DEBUG Processing 668/889 atomic regions from SNP 200381 to 200981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,996 DEBUG Processing 560/1018 atomic regions from SNP 167880 to 168480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,018 DEBUG Processing 143/230 atomic regions from SNP 42679 to 43279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,058 DEBUG Processing 657/852 atomic regions from SNP 197059 to 197659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,166 DEBUG Processing 515/1129 atomic regions from SNP 154472 to 155072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,240 DEBUG Processing 144/230 atomic regions from SNP 42979 to 43579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,245 DEBUG Processing 669/889 atomic regions from SNP 200681 to 201281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,261 DEBUG Processing 561/1018 atomic regions from SNP 168180 to 168780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,266 DEBUG Processing 441/645 atomic regions from SNP 132299 to 132899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,303 DEBUG Processing 658/852 atomic regions from SNP 197359 to 197959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,459 DEBUG Processing 145/230 atomic regions from SNP 43279 to 43879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,482 DEBUG Processing 516/1129 atomic regions from SNP 154772 to 155372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,487 DEBUG Processing 670/889 atomic regions from SNP 200981 to 201581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,522 DEBUG Processing 562/1018 atomic regions from SNP 168480 to 169080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,538 DEBUG Processing 442/645 atomic regions from SNP 132599 to 133199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,549 DEBUG Processing 659/852 atomic regions from SNP 197659 to 198259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,672 DEBUG Processing 146/230 atomic regions from SNP 43579 to 44179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,728 DEBUG Processing 671/889 atomic regions from SNP 201281 to 201881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,781 DEBUG Processing 563/1018 atomic regions from SNP 168780 to 169380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,792 DEBUG Processing 517/1129 atomic regions from SNP 155072 to 155672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,801 DEBUG Processing 443/645 atomic regions from SNP 132899 to 133499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,822 DEBUG Processing 660/852 atomic regions from SNP 197959 to 198559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,887 DEBUG Processing 147/230 atomic regions from SNP 43879 to 44479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:16,967 DEBUG Processing 672/889 atomic regions from SNP 201581 to 202181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,035 DEBUG Processing 564/1018 atomic regions from SNP 169080 to 169680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,045 DEBUG Processing 444/645 atomic regions from SNP 133199 to 133799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,089 DEBUG Processing 518/1129 atomic regions from SNP 155372 to 155972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,098 DEBUG Processing 661/852 atomic regions from SNP 198259 to 198859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,106 DEBUG Processing 148/230 atomic regions from SNP 44179 to 44779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,225 DEBUG Processing 673/889 atomic regions from SNP 201881 to 202481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,284 DEBUG Processing 445/645 atomic regions from SNP 133499 to 134099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,289 DEBUG Processing 565/1018 atomic regions from SNP 169380 to 169980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,325 DEBUG Processing 149/230 atomic regions from SNP 44479 to 45079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,379 DEBUG Processing 662/852 atomic regions from SNP 198559 to 199159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,396 DEBUG Processing 519/1129 atomic regions from SNP 155672 to 156272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,488 DEBUG Processing 674/889 atomic regions from SNP 202181 to 202781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,512 DEBUG Processing 446/645 atomic regions from SNP 133799 to 134399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,541 DEBUG Processing 150/230 atomic regions from SNP 44779 to 45379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,545 DEBUG Processing 566/1018 atomic regions from SNP 169680 to 170280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,667 DEBUG Processing 663/852 atomic regions from SNP 198859 to 199459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,708 DEBUG Processing 520/1129 atomic regions from SNP 155972 to 156572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,752 DEBUG Processing 447/645 atomic regions from SNP 134099 to 134699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,756 DEBUG Processing 675/889 atomic regions from SNP 202481 to 203081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,770 DEBUG Processing 151/230 atomic regions from SNP 45079 to 45679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,816 DEBUG Processing 567/1018 atomic regions from SNP 169980 to 170580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,947 DEBUG Processing 664/852 atomic regions from SNP 199159 to 199759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,989 DEBUG Processing 448/645 atomic regions from SNP 134399 to 134999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,991 DEBUG Processing 152/230 atomic regions from SNP 45379 to 45979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:17,999 DEBUG Processing 676/889 atomic regions from SNP 202781 to 203381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,009 DEBUG Processing 521/1129 atomic regions from SNP 156272 to 156872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,086 DEBUG Processing 568/1018 atomic regions from SNP 170280 to 170880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,203 DEBUG Processing 153/230 atomic regions from SNP 45679 to 46279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,211 DEBUG Processing 665/852 atomic regions from SNP 199459 to 200059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,231 DEBUG Processing 677/889 atomic regions from SNP 203081 to 203681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,231 DEBUG Processing 449/645 atomic regions from SNP 134699 to 135299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,310 DEBUG Processing 522/1129 atomic regions from SNP 156572 to 157172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,352 DEBUG Processing 569/1018 atomic regions from SNP 170580 to 171180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,415 DEBUG Processing 154/230 atomic regions from SNP 45979 to 46579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,460 DEBUG Processing 666/852 atomic regions from SNP 199759 to 200359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,473 DEBUG Processing 678/889 atomic regions from SNP 203381 to 203981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,491 DEBUG Processing 450/645 atomic regions from SNP 134999 to 135599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,605 DEBUG Processing 523/1129 atomic regions from SNP 156872 to 157472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,612 DEBUG Processing 570/1018 atomic regions from SNP 170880 to 171480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,630 DEBUG Processing 155/230 atomic regions from SNP 46279 to 46879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,711 DEBUG Processing 679/889 atomic regions from SNP 203681 to 204281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,731 DEBUG Processing 667/852 atomic regions from SNP 200059 to 200659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,736 DEBUG Processing 451/645 atomic regions from SNP 135299 to 135899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,845 DEBUG Processing 156/230 atomic regions from SNP 46579 to 47179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:18,866 DEBUG Processing 571/1018 atomic regions from SNP 171180 to 171780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,904 DEBUG Processing 524/1129 atomic regions from SNP 157172 to 157772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,959 DEBUG Processing 680/889 atomic regions from SNP 203981 to 204581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,995 DEBUG Processing 452/645 atomic regions from SNP 135599 to 136199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,001 DEBUG Processing 668/852 atomic regions from SNP 200359 to 200959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,058 DEBUG Processing 157/230 atomic regions from SNP 46879 to 47479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,123 DEBUG Processing 572/1018 atomic regions from SNP 171480 to 172080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,201 DEBUG Processing 681/889 atomic regions from SNP 204281 to 204881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,209 DEBUG Processing 525/1129 atomic regions from SNP 157472 to 158072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,235 DEBUG Processing 453/645 atomic regions from SNP 135899 to 136499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,275 DEBUG Processing 669/852 atomic regions from SNP 200659 to 201259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,278 DEBUG Processing 158/230 atomic regions from SNP 47179 to 47779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,382 DEBUG Processing 573/1018 atomic regions from SNP 171780 to 172380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,436 DEBUG Processing 682/889 atomic regions from SNP 204581 to 205181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,493 DEBUG Processing 454/645 atomic regions from SNP 136199 to 136799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,499 DEBUG Processing 159/230 atomic regions from SNP 47479 to 48079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,524 DEBUG Processing 526/1129 atomic regions from SNP 157772 to 158372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,555 DEBUG Processing 670/852 atomic regions from SNP 200959 to 201559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,635 DEBUG Processing 574/1018 atomic regions from SNP 172080 to 172680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,662 DEBUG Processing 683/889 atomic regions from SNP 204881 to 205481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,714 DEBUG Processing 160/230 atomic regions from SNP 47779 to 48379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:19,754 DEBUG Processing 455/645 atomic regions from SNP 136499 to 137099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,836 DEBUG Processing 671/852 atomic regions from SNP 201259 to 201859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,839 DEBUG Processing 527/1129 atomic regions from SNP 158072 to 158672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,890 DEBUG Processing 575/1018 atomic regions from SNP 172380 to 172980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,894 DEBUG Processing 684/889 atomic regions from SNP 205181 to 205781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,930 DEBUG Processing 161/230 atomic regions from SNP 48079 to 48679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,017 DEBUG Processing 456/645 atomic regions from SNP 136799 to 137399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,117 DEBUG Processing 672/852 atomic regions from SNP 201559 to 202159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,133 DEBUG Processing 685/889 atomic regions from SNP 205481 to 206081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,152 DEBUG Processing 162/230 atomic regions from SNP 48379 to 48979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,153 DEBUG Processing 576/1018 atomic regions from SNP 172680 to 173280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,155 DEBUG Processing 528/1129 atomic regions from SNP 158372 to 158972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,254 DEBUG Processing 457/645 atomic regions from SNP 137099 to 137699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,372 DEBUG Processing 686/889 atomic regions from SNP 205781 to 206381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,375 DEBUG Processing 163/230 atomic regions from SNP 48679 to 49279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,393 DEBUG Processing 673/852 atomic regions from SNP 201859 to 202459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,418 DEBUG Processing 577/1018 atomic regions from SNP 172980 to 173580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,461 DEBUG Processing 529/1129 atomic regions from SNP 158672 to 159272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,501 DEBUG Processing 458/645 atomic regions from SNP 137399 to 137999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,589 DEBUG Processing 164/230 atomic regions from SNP 48979 to 49579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,606 DEBUG Processing 687/889 atomic regions from SNP 206081 to 206681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,661 DEBUG Processing 674/852 atomic regions from SNP 202159 to 202759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,673 DEBUG Processing 578/1018 atomic regions from SNP 173280 to 173880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,752 DEBUG Processing 459/645 atomic regions from SNP 137699 to 138299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,774 DEBUG Processing 530/1129 atomic regions from SNP 158972 to 159572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,802 DEBUG Processing 165/230 atomic regions from SNP 49279 to 49879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:20,836 DEBUG Processing 688/889 atomic regions from SNP 206381 to 206981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,919 DEBUG Processing 579/1018 atomic regions from SNP 173580 to 174180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,924 DEBUG Processing 675/852 atomic regions from SNP 202459 to 203059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,013 DEBUG Processing 460/645 atomic regions from SNP 137999 to 138599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,025 DEBUG Processing 166/230 atomic regions from SNP 49579 to 50179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,071 DEBUG Processing 689/889 atomic regions from SNP 206681 to 207281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,099 DEBUG Processing 531/1129 atomic regions from SNP 159272 to 159872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,163 DEBUG Processing 580/1018 atomic regions from SNP 173880 to 174480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,182 DEBUG Processing 676/852 atomic regions from SNP 202759 to 203359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,243 DEBUG Processing 167/230 atomic regions from SNP 49879 to 50479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,286 DEBUG Processing 461/645 atomic regions from SNP 138299 to 138899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,305 DEBUG Processing 690/889 atomic regions from SNP 206981 to 207581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,408 DEBUG Processing 532/1129 atomic regions from SNP 159572 to 160172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,419 DEBUG Processing 581/1018 atomic regions from SNP 174180 to 174780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,451 DEBUG Processing 677/852 atomic regions from SNP 203059 to 203659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,455 DEBUG Processing 168/230 atomic regions from SNP 50179 to 50779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,534 DEBUG Processing 691/889 atomic regions from SNP 207281 to 207881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,551 DEBUG Processing 462/645 atomic regions from SNP 138599 to 139199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,671 DEBUG Processing 169/230 atomic regions from SNP 50479 to 51079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,678 DEBUG Processing 582/1018 atomic regions from SNP 174480 to 175080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,685 DEBUG Processing 533/1129 atomic regions from SNP 159872 to 160472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,724 DEBUG Processing 678/852 atomic regions from SNP 203359 to 203959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,759 DEBUG Processing 692/889 atomic regions from SNP 207581 to 208181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,819 DEBUG Processing 463/645 atomic regions from SNP 138899 to 139499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,905 DEBUG Processing 170/230 atomic regions from SNP 50779 to 51379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:21,939 DEBUG Processing 583/1018 atomic regions from SNP 174780 to 175380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,961 DEBUG Processing 534/1129 atomic regions from SNP 160172 to 160772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,989 DEBUG Processing 693/889 atomic regions from SNP 207881 to 208481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,998 DEBUG Processing 679/852 atomic regions from SNP 203659 to 204259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,082 DEBUG Processing 464/645 atomic regions from SNP 139199 to 139799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,125 DEBUG Processing 171/230 atomic regions from SNP 51079 to 51679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,200 DEBUG Processing 584/1018 atomic regions from SNP 175080 to 175680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,222 DEBUG Processing 694/889 atomic regions from SNP 208181 to 208781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,239 DEBUG Processing 535/1129 atomic regions from SNP 160472 to 161072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,271 DEBUG Processing 680/852 atomic regions from SNP 203959 to 204559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,334 DEBUG Processing 465/645 atomic regions from SNP 139499 to 140099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,340 DEBUG Processing 172/230 atomic regions from SNP 51379 to 51979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,456 DEBUG Processing 585/1018 atomic regions from SNP 175380 to 175980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,456 DEBUG Processing 695/889 atomic regions from SNP 208481 to 209081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,521 DEBUG Processing 536/1129 atomic regions from SNP 160772 to 161372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,542 DEBUG Processing 681/852 atomic regions from SNP 204259 to 204859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,555 DEBUG Processing 173/230 atomic regions from SNP 51679 to 52279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,590 DEBUG Processing 466/645 atomic regions from SNP 139799 to 140399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,688 DEBUG Processing 696/889 atomic regions from SNP 208781 to 209381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,720 DEBUG Processing 586/1018 atomic regions from SNP 175680 to 176280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,772 DEBUG Processing 174/230 atomic regions from SNP 51979 to 52579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,803 DEBUG Processing 537/1129 atomic regions from SNP 161072 to 161672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,804 DEBUG Processing 682/852 atomic regions from SNP 204559 to 205159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,835 DEBUG Processing 467/645 atomic regions from SNP 140099 to 140699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,919 DEBUG Processing 697/889 atomic regions from SNP 209081 to 209681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,987 DEBUG Processing 175/230 atomic regions from SNP 52279 to 52879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:22,997 DEBUG Processing 587/1018 atomic regions from SNP 175980 to 176580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,062 DEBUG Processing 683/852 atomic regions from SNP 204859 to 205459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,083 DEBUG Processing 538/1129 atomic regions from SNP 161372 to 161972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,091 DEBUG Processing 468/645 atomic regions from SNP 140399 to 140999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,153 DEBUG Processing 698/889 atomic regions from SNP 209381 to 209981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,198 DEBUG Processing 176/230 atomic regions from SNP 52579 to 53179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,269 DEBUG Processing 588/1018 atomic regions from SNP 176280 to 176880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,331 DEBUG Processing 684/852 atomic regions from SNP 205159 to 205759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,352 DEBUG Processing 469/645 atomic regions from SNP 140699 to 141299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,366 DEBUG Processing 539/1129 atomic regions from SNP 161672 to 162272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,391 DEBUG Processing 699/889 atomic regions from SNP 209681 to 210281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,410 DEBUG Processing 177/230 atomic regions from SNP 52879 to 53479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,540 DEBUG Processing 589/1018 atomic regions from SNP 176580 to 177180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,616 DEBUG Processing 685/852 atomic regions from SNP 205459 to 206059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,627 DEBUG Processing 470/645 atomic regions from SNP 140999 to 141599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,632 DEBUG Processing 178/230 atomic regions from SNP 53179 to 53779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,633 DEBUG Processing 700/889 atomic regions from SNP 209981 to 210581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,651 DEBUG Processing 540/1129 atomic regions from SNP 161972 to 162572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,807 DEBUG Processing 590/1018 atomic regions from SNP 176880 to 177480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,856 DEBUG Processing 179/230 atomic regions from SNP 53479 to 54079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:23,874 DEBUG Processing 701/889 atomic regions from SNP 210281 to 210881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,896 DEBUG Processing 686/852 atomic regions from SNP 205759 to 206359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,908 DEBUG Processing 471/645 atomic regions from SNP 141299 to 141899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,930 DEBUG Processing 541/1129 atomic regions from SNP 162272 to 162872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,068 DEBUG Processing 591/1018 atomic regions from SNP 177180 to 177780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,074 DEBUG Processing 180/230 atomic regions from SNP 53779 to 54379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,111 DEBUG Processing 702/889 atomic regions from SNP 210581 to 211181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,158 DEBUG Processing 472/645 atomic regions from SNP 141599 to 142199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,175 DEBUG Processing 687/852 atomic regions from SNP 206059 to 206659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,209 DEBUG Processing 542/1129 atomic regions from SNP 162572 to 163172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,287 DEBUG Processing 181/230 atomic regions from SNP 54079 to 54679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,320 DEBUG Processing 592/1018 atomic regions from SNP 177480 to 178080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,346 DEBUG Processing 703/889 atomic regions from SNP 210881 to 211481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,400 DEBUG Processing 473/645 atomic regions from SNP 141899 to 142499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,455 DEBUG Processing 688/852 atomic regions from SNP 206359 to 206959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,487 DEBUG Processing 543/1129 atomic regions from SNP 162872 to 163472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,500 DEBUG Processing 182/230 atomic regions from SNP 54379 to 54979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,576 DEBUG Processing 593/1018 atomic regions from SNP 177780 to 178380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,600 DEBUG Processing 704/889 atomic regions from SNP 211181 to 211781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,646 DEBUG Processing 474/645 atomic regions from SNP 142199 to 142799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,712 DEBUG Processing 183/230 atomic regions from SNP 54679 to 55279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,726 DEBUG Processing 689/852 atomic regions from SNP 206659 to 207259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,765 DEBUG Processing 544/1129 atomic regions from SNP 163172 to 163772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,830 DEBUG Processing 594/1018 atomic regions from SNP 178080 to 178680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,863 DEBUG Processing 705/889 atomic regions from SNP 211481 to 212081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,885 DEBUG Processing 475/645 atomic regions from SNP 142499 to 143099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,927 DEBUG Processing 184/230 atomic regions from SNP 54979 to 55579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:24,994 DEBUG Processing 690/852 atomic regions from SNP 206959 to 207559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,044 DEBUG Processing 545/1129 atomic regions from SNP 163472 to 164072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,084 DEBUG Processing 595/1018 atomic regions from SNP 178380 to 178980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,136 DEBUG Processing 476/645 atomic regions from SNP 142799 to 143399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,137 DEBUG Processing 706/889 atomic regions from SNP 211781 to 212381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,145 DEBUG Processing 185/230 atomic regions from SNP 55279 to 55879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,254 DEBUG Processing 691/852 atomic regions from SNP 207259 to 207859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,319 DEBUG Processing 546/1129 atomic regions from SNP 163772 to 164372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,334 DEBUG Processing 596/1018 atomic regions from SNP 178680 to 179280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,362 DEBUG Processing 186/230 atomic regions from SNP 55579 to 56179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,397 DEBUG Processing 477/645 atomic regions from SNP 143099 to 143699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,406 DEBUG Processing 707/889 atomic regions from SNP 212081 to 212681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,532 DEBUG Processing 692/852 atomic regions from SNP 207559 to 208159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,580 DEBUG Processing 187/230 atomic regions from SNP 55879 to 56479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,590 DEBUG Processing 597/1018 atomic regions from SNP 178980 to 179580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,594 DEBUG Processing 547/1129 atomic regions from SNP 164072 to 164672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,636 DEBUG Processing 478/645 atomic regions from SNP 143399 to 143999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,665 DEBUG Processing 708/889 atomic regions from SNP 212381 to 212981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,795 DEBUG Processing 188/230 atomic regions from SNP 56179 to 56779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:25,810 DEBUG Processing 693/852 atomic regions from SNP 207859 to 208459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,848 DEBUG Processing 598/1018 atomic regions from SNP 179280 to 179880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,875 DEBUG Processing 548/1129 atomic regions from SNP 164372 to 164972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,878 DEBUG Processing 479/645 atomic regions from SNP 143699 to 144299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,898 DEBUG Processing 709/889 atomic regions from SNP 212681 to 213281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,017 DEBUG Processing 189/230 atomic regions from SNP 56479 to 57079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,076 DEBUG Processing 694/852 atomic regions from SNP 208159 to 208759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,100 DEBUG Processing 599/1018 atomic regions from SNP 179580 to 180180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,121 DEBUG Processing 480/645 atomic regions from SNP 143999 to 144599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,131 DEBUG Processing 710/889 atomic regions from SNP 212981 to 213581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,156 DEBUG Processing 549/1129 atomic regions from SNP 164672 to 165272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,250 DEBUG Processing 190/230 atomic regions from SNP 56779 to 57379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,318 DEBUG Processing 695/852 atomic regions from SNP 208459 to 209059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,352 DEBUG Processing 600/1018 atomic regions from SNP 179880 to 180480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,366 DEBUG Processing 711/889 atomic regions from SNP 213281 to 213881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,366 DEBUG Processing 481/645 atomic regions from SNP 144299 to 144899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,442 DEBUG Processing 550/1129 atomic regions from SNP 164972 to 165572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,466 DEBUG Processing 191/230 atomic regions from SNP 57079 to 57679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,559 DEBUG Processing 696/852 atomic regions from SNP 208759 to 209359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,603 DEBUG Processing 712/889 atomic regions from SNP 213581 to 214181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,610 DEBUG Processing 601/1018 atomic regions from SNP 180180 to 180780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,613 DEBUG Processing 482/645 atomic regions from SNP 144599 to 145199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,679 DEBUG Processing 192/230 atomic regions from SNP 57379 to 57979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,717 DEBUG Processing 551/1129 atomic regions from SNP 165272 to 165872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,797 DEBUG Processing 697/852 atomic regions from SNP 209059 to 209659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,837 DEBUG Processing 713/889 atomic regions from SNP 213881 to 214481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,860 DEBUG Processing 483/645 atomic regions from SNP 144899 to 145499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,867 DEBUG Processing 602/1018 atomic regions from SNP 180480 to 181080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,893 DEBUG Processing 193/230 atomic regions from SNP 57679 to 58279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:26,990 DEBUG Processing 552/1129 atomic regions from SNP 165572 to 166172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,031 DEBUG Processing 698/852 atomic regions from SNP 209359 to 209959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,071 DEBUG Processing 714/889 atomic regions from SNP 214181 to 214781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,106 DEBUG Processing 484/645 atomic regions from SNP 145199 to 145799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,108 DEBUG Processing 194/230 atomic regions from SNP 57979 to 58579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,122 DEBUG Processing 603/1018 atomic regions from SNP 180780 to 181380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,265 DEBUG Processing 699/852 atomic regions from SNP 209659 to 210259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,272 DEBUG Processing 553/1129 atomic regions from SNP 165872 to 166472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,308 DEBUG Processing 715/889 atomic regions from SNP 214481 to 215081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,323 DEBUG Processing 195/230 atomic regions from SNP 58279 to 58879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,349 DEBUG Processing 485/645 atomic regions from SNP 145499 to 146099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,378 DEBUG Processing 604/1018 atomic regions from SNP 181080 to 181680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,500 DEBUG Processing 700/852 atomic regions from SNP 209959 to 210559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,539 DEBUG Processing 196/230 atomic regions from SNP 58579 to 59179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,543 DEBUG Processing 554/1129 atomic regions from SNP 166172 to 166772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,548 DEBUG Processing 716/889 atomic regions from SNP 214781 to 215381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,607 DEBUG Processing 486/645 atomic regions from SNP 145799 to 146399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,634 DEBUG Processing 605/1018 atomic regions from SNP 181380 to 181980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,736 DEBUG Processing 701/852 atomic regions from SNP 210259 to 210859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,762 DEBUG Processing 197/230 atomic regions from SNP 58879 to 59479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:27,813 DEBUG Processing 717/889 atomic regions from SNP 215081 to 215681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,821 DEBUG Processing 555/1129 atomic regions from SNP 166472 to 167072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,877 DEBUG Processing 487/645 atomic regions from SNP 146099 to 146699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,899 DEBUG Processing 606/1018 atomic regions from SNP 181680 to 182280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,977 DEBUG Processing 702/852 atomic regions from SNP 210559 to 211159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,980 DEBUG Processing 198/230 atomic regions from SNP 59179 to 59779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,082 DEBUG Processing 718/889 atomic regions from SNP 215381 to 215981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,090 DEBUG Processing 556/1129 atomic regions from SNP 166772 to 167372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,144 DEBUG Processing 488/645 atomic regions from SNP 146399 to 146999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,158 DEBUG Processing 607/1018 atomic regions from SNP 181980 to 182580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,195 DEBUG Processing 199/230 atomic regions from SNP 59479 to 60079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,216 DEBUG Processing 703/852 atomic regions from SNP 210859 to 211459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,351 DEBUG Processing 719/889 atomic regions from SNP 215681 to 216281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,362 DEBUG Processing 557/1129 atomic regions from SNP 167072 to 167672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,412 DEBUG Processing 200/230 atomic regions from SNP 59779 to 60379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,424 DEBUG Processing 489/645 atomic regions from SNP 146699 to 147299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,424 DEBUG Processing 608/1018 atomic regions from SNP 182280 to 182880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,454 DEBUG Processing 704/852 atomic regions from SNP 211159 to 211759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,628 DEBUG Processing 720/889 atomic regions from SNP 215981 to 216581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,635 DEBUG Processing 201/230 atomic regions from SNP 60079 to 60679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,640 DEBUG Processing 558/1129 atomic regions from SNP 167372 to 167972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,686 DEBUG Processing 609/1018 atomic regions from SNP 182580 to 183180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,691 DEBUG Processing 490/645 atomic regions from SNP 146999 to 147599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,691 DEBUG Processing 705/852 atomic regions from SNP 211459 to 212059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,860 DEBUG Processing 202/230 atomic regions from SNP 60379 to 60979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:28,899 DEBUG Processing 721/889 atomic regions from SNP 216281 to 216881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,912 DEBUG Processing 559/1129 atomic regions from SNP 167672 to 168272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,933 DEBUG Processing 706/852 atomic regions from SNP 211759 to 212359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,953 DEBUG Processing 610/1018 atomic regions from SNP 182880 to 183480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,958 DEBUG Processing 491/645 atomic regions from SNP 147299 to 147899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,077 DEBUG Processing 203/230 atomic regions from SNP 60679 to 61279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,151 DEBUG Processing 722/889 atomic regions from SNP 216581 to 217181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,176 DEBUG Processing 707/852 atomic regions from SNP 212059 to 212659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,186 DEBUG Processing 560/1129 atomic regions from SNP 167972 to 168572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,224 DEBUG Processing 611/1018 atomic regions from SNP 183180 to 183780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,234 DEBUG Processing 492/645 atomic regions from SNP 147599 to 148199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,290 DEBUG Processing 204/230 atomic regions from SNP 60979 to 61579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,399 DEBUG Processing 723/889 atomic regions from SNP 216881 to 217481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,416 DEBUG Processing 708/852 atomic regions from SNP 212359 to 212959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,462 DEBUG Processing 561/1129 atomic regions from SNP 168272 to 168872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,489 DEBUG Processing 612/1018 atomic regions from SNP 183480 to 184080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,504 DEBUG Processing 493/645 atomic regions from SNP 147899 to 148499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,505 DEBUG Processing 205/230 atomic regions from SNP 61279 to 61879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,642 DEBUG Processing 724/889 atomic regions from SNP 217181 to 217781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,654 DEBUG Processing 709/852 atomic regions from SNP 212659 to 213259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,725 DEBUG Processing 206/230 atomic regions from SNP 61579 to 62179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:29,739 DEBUG Processing 562/1129 atomic regions from SNP 168572 to 169172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,750 DEBUG Processing 613/1018 atomic regions from SNP 183780 to 184380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,768 DEBUG Processing 494/645 atomic regions from SNP 148199 to 148799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,887 DEBUG Processing 710/852 atomic regions from SNP 212959 to 213559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,912 DEBUG Processing 725/889 atomic regions from SNP 217481 to 218081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,941 DEBUG Processing 207/230 atomic regions from SNP 61879 to 62479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,010 DEBUG Processing 614/1018 atomic regions from SNP 184080 to 184680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,013 DEBUG Processing 563/1129 atomic regions from SNP 168872 to 169472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,032 DEBUG Processing 495/645 atomic regions from SNP 148499 to 149099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,125 DEBUG Processing 711/852 atomic regions from SNP 213259 to 213859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,159 DEBUG Processing 208/230 atomic regions from SNP 62179 to 62779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,171 DEBUG Processing 726/889 atomic regions from SNP 217781 to 218381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,265 DEBUG Processing 615/1018 atomic regions from SNP 184380 to 184980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,285 DEBUG Processing 564/1129 atomic regions from SNP 169172 to 169772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,292 DEBUG Processing 496/645 atomic regions from SNP 148799 to 149399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,367 DEBUG Processing 712/852 atomic regions from SNP 213559 to 214159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,382 DEBUG Processing 209/230 atomic regions from SNP 62479 to 63079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,415 DEBUG Processing 727/889 atomic regions from SNP 218081 to 218681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,521 DEBUG Processing 616/1018 atomic regions from SNP 184680 to 185280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,557 DEBUG Processing 497/645 atomic regions from SNP 149099 to 149699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,567 DEBUG Processing 565/1129 atomic regions from SNP 169472 to 170072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,610 DEBUG Processing 713/852 atomic regions from SNP 213859 to 214459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,617 DEBUG Processing 210/230 atomic regions from SNP 62779 to 63379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,654 DEBUG Processing 728/889 atomic regions from SNP 218381 to 218981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,785 DEBUG Processing 617/1018 atomic regions from SNP 184980 to 185580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,821 DEBUG Processing 498/645 atomic regions from SNP 149399 to 149999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,844 DEBUG Processing 211/230 atomic regions from SNP 63079 to 63679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:30,853 DEBUG Processing 566/1129 atomic regions from SNP 169772 to 170372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,855 DEBUG Processing 714/852 atomic regions from SNP 214159 to 214759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,895 DEBUG Processing 729/889 atomic regions from SNP 218681 to 219281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,047 DEBUG Processing 618/1018 atomic regions from SNP 185280 to 185880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,068 DEBUG Processing 212/230 atomic regions from SNP 63379 to 63979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,091 DEBUG Processing 499/645 atomic regions from SNP 149699 to 150299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,122 DEBUG Processing 715/852 atomic regions from SNP 214459 to 215059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,131 DEBUG Processing 567/1129 atomic regions from SNP 170072 to 170672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,157 DEBUG Processing 730/889 atomic regions from SNP 218981 to 219581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,296 DEBUG Processing 213/230 atomic regions from SNP 63679 to 64279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,309 DEBUG Processing 619/1018 atomic regions from SNP 185580 to 186180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,344 DEBUG Processing 500/645 atomic regions from SNP 149999 to 150599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,384 DEBUG Processing 716/852 atomic regions from SNP 214759 to 215359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,412 DEBUG Processing 731/889 atomic regions from SNP 219281 to 219881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,418 DEBUG Processing 568/1129 atomic regions from SNP 170372 to 170972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,517 DEBUG Processing 214/230 atomic regions from SNP 63979 to 64579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,579 DEBUG Processing 620/1018 atomic regions from SNP 185880 to 186480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,590 DEBUG Processing 501/645 atomic regions from SNP 150299 to 150899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,636 DEBUG Processing 717/852 atomic regions from SNP 215059 to 215659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,652 DEBUG Processing 732/889 atomic regions from SNP 219581 to 220181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,699 DEBUG Processing 569/1129 atomic regions from SNP 170672 to 171272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,731 DEBUG Processing 215/230 atomic regions from SNP 64279 to 64879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,836 DEBUG Processing 502/645 atomic regions from SNP 150599 to 151199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,847 DEBUG Processing 621/1018 atomic regions from SNP 186180 to 186780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,889 DEBUG Processing 718/852 atomic regions from SNP 215359 to 215959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,894 DEBUG Processing 733/889 atomic regions from SNP 219881 to 220481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,949 DEBUG Processing 216/230 atomic regions from SNP 64579 to 65179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:31,974 DEBUG Processing 570/1129 atomic regions from SNP 170972 to 171572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,082 DEBUG Processing 503/645 atomic regions from SNP 150899 to 151499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,105 DEBUG Processing 622/1018 atomic regions from SNP 186480 to 187080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,132 DEBUG Processing 734/889 atomic regions from SNP 220181 to 220781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,156 DEBUG Processing 719/852 atomic regions from SNP 215659 to 216259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,171 DEBUG Processing 217/230 atomic regions from SNP 64879 to 65479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,240 DEBUG Processing 571/1129 atomic regions from SNP 171272 to 171872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,334 DEBUG Processing 504/645 atomic regions from SNP 151199 to 151799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,366 DEBUG Processing 623/1018 atomic regions from SNP 186780 to 187380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,376 DEBUG Processing 735/889 atomic regions from SNP 220481 to 221081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,393 DEBUG Processing 218/230 atomic regions from SNP 65179 to 65779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,439 DEBUG Processing 720/852 atomic regions from SNP 215959 to 216559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,509 DEBUG Processing 572/1129 atomic regions from SNP 171572 to 172172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,611 DEBUG Processing 505/645 atomic regions from SNP 151499 to 152099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,617 DEBUG Processing 219/230 atomic regions from SNP 65479 to 66079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,618 DEBUG Processing 736/889 atomic regions from SNP 220781 to 221381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,628 DEBUG Processing 624/1018 atomic regions from SNP 187080 to 187680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,713 DEBUG Processing 721/852 atomic regions from SNP 216259 to 216859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,778 DEBUG Processing 573/1129 atomic regions from SNP 171872 to 172472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,843 DEBUG Processing 220/230 atomic regions from SNP 65779 to 66379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:32,866 DEBUG Processing 737/889 atomic regions from SNP 221081 to 221681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,884 DEBUG Processing 506/645 atomic regions from SNP 151799 to 152399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,896 DEBUG Processing 625/1018 atomic regions from SNP 187380 to 187980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,980 DEBUG Processing 722/852 atomic regions from SNP 216559 to 217159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,053 DEBUG Processing 574/1129 atomic regions from SNP 172172 to 172772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,066 DEBUG Processing 221/230 atomic regions from SNP 66079 to 66679 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,112 DEBUG Processing 738/889 atomic regions from SNP 221381 to 221981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,161 DEBUG Processing 507/645 atomic regions from SNP 152099 to 152699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,164 DEBUG Processing 626/1018 atomic regions from SNP 187680 to 188280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,246 DEBUG Processing 723/852 atomic regions from SNP 216859 to 217459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,285 DEBUG Processing 222/230 atomic regions from SNP 66379 to 66979 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,324 DEBUG Processing 575/1129 atomic regions from SNP 172472 to 173072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,361 DEBUG Processing 739/889 atomic regions from SNP 221681 to 222281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,432 DEBUG Processing 627/1018 atomic regions from SNP 187980 to 188580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,445 DEBUG Processing 508/645 atomic regions from SNP 152399 to 152999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,488 DEBUG Processing 724/852 atomic regions from SNP 217159 to 217759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,506 DEBUG Processing 223/230 atomic regions from SNP 66679 to 67279 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,597 DEBUG Processing 576/1129 atomic regions from SNP 172772 to 173372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,610 DEBUG Processing 740/889 atomic regions from SNP 221981 to 222581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,703 DEBUG Processing 628/1018 atomic regions from SNP 188280 to 188880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,730 DEBUG Processing 509/645 atomic regions from SNP 152699 to 153299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,736 DEBUG Processing 224/230 atomic regions from SNP 66979 to 67579 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,738 DEBUG Processing 725/852 atomic regions from SNP 217459 to 218059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,850 DEBUG Processing 741/889 atomic regions from SNP 222281 to 222881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,868 DEBUG Processing 577/1129 atomic regions from SNP 173072 to 173672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,970 DEBUG Processing 225/230 atomic regions from SNP 67279 to 67879 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:33,974 DEBUG Processing 629/1018 atomic regions from SNP 188580 to 189180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,991 DEBUG Processing 726/852 atomic regions from SNP 217759 to 218359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,008 DEBUG Processing 510/645 atomic regions from SNP 152999 to 153599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,083 DEBUG Processing 742/889 atomic regions from SNP 222581 to 223181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,134 DEBUG Processing 578/1129 atomic regions from SNP 173372 to 173972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,203 DEBUG Processing 226/230 atomic regions from SNP 67579 to 68179 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,245 DEBUG Processing 727/852 atomic regions from SNP 218059 to 218659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,253 DEBUG Processing 630/1018 atomic regions from SNP 188880 to 189480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,280 DEBUG Processing 511/645 atomic regions from SNP 153299 to 153899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,329 DEBUG Processing 743/889 atomic regions from SNP 222881 to 223481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,403 DEBUG Processing 579/1129 atomic regions from SNP 173672 to 174272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,425 DEBUG Processing 227/230 atomic regions from SNP 67879 to 68479 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,501 DEBUG Processing 728/852 atomic regions from SNP 218359 to 218959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,527 DEBUG Processing 631/1018 atomic regions from SNP 189180 to 189780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,563 DEBUG Processing 512/645 atomic regions from SNP 153599 to 154199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,581 DEBUG Processing 744/889 atomic regions from SNP 223181 to 223781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,646 DEBUG Processing 228/230 atomic regions from SNP 68179 to 68779 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,668 DEBUG Processing 580/1129 atomic regions from SNP 173972 to 174572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,754 DEBUG Processing 729/852 atomic regions from SNP 218659 to 219259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,796 DEBUG Processing 632/1018 atomic regions from SNP 189480 to 190080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,834 DEBUG Processing 745/889 atomic regions from SNP 223481 to 224081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,847 DEBUG Processing 513/645 atomic regions from SNP 153899 to 154499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,873 DEBUG Processing 229/230 atomic regions from SNP 68479 to 69079 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:34,934 DEBUG Processing 581/1129 atomic regions from SNP 174272 to 174872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,006 DEBUG Processing 730/852 atomic regions from SNP 218959 to 219559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,065 DEBUG Processing 633/1018 atomic regions from SNP 189780 to 190380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,084 DEBUG Processing 746/889 atomic regions from SNP 223781 to 224381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,102 DEBUG Processing 230/230 atomic regions from SNP 68779 to 69379 for chrX (subchromosome 5 of 5). 2025-01-31 09:45:35,122 DEBUG Processing 514/645 atomic regions from SNP 154199 to 154799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,201 DEBUG Processing 582/1129 atomic regions from SNP 174572 to 175172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,226 DEBUG Unique SNPs positions in subchromosome 5: 69380 2025-01-31 09:45:35,255 DEBUG Processing 731/852 atomic regions from SNP 219259 to 219859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,330 DEBUG Processing 747/889 atomic regions from SNP 224081 to 224681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,332 DEBUG Processing 634/1018 atomic regions from SNP 190080 to 190680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,340 DEBUG Subchromosome time: 59.838311418076046, subchromosome SNPs: 69380 2025-01-31 09:45:35,340 DEBUG Estimated BADs: [1.58, 12.61, 4.73, 0.79, 1.58, 0.79, 0.00, 0.00, 3.15, 0.79, 3.15, 1.58, 7.88, 3.15, 0.79, 6.30, 1.58, 3.15, 1.58, 0.32, 0.39, 1.58, 15.76] SNP counts: [3929, 690, 9924, 3904, 10273, 4049, 3, 52, 6109, 14185, 12003, 27448, 2267, 4636, 26243, 1841, 6634, 12245, 11985, 14910, 12228, 57113, 39] SNP IDs counts: [3929, 690, 9924, 3904, 10273, 4049, 3, 52, 6109, 14185, 12003, 27448, 2267, 4636, 26243, 1841, 6634, 12245, 11985, 14910, 12228, 57113, 39] Critical gap: 756809bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.55Mbp, 7.91Mbp, 13.70Mbp, 16.05Mbp, 22.25Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[1.53Mbp], 30.07Mbp[1.07Mbp], 39.28Mbp, 47.96Mbp, 56.34Mbp, 72.91Mbp, 74.30Mbp, 77.42Mbp, 93.75Mbp, 94.83Mbp, 99.00Mbp, 105.98Mbp, 113.49Mbp, 124.24Mbp[1.77Mbp], 133.89Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:45:35,340 DEBUG chrX time: 59.83888079004828 s 2025-01-31 09:45:35,394 DEBUG Processing 515/645 atomic regions from SNP 154499 to 155099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,476 DEBUG Processing 583/1129 atomic regions from SNP 174872 to 175472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,502 DEBUG chrX: Fitting background model for 21 segments 2025-01-31 09:45:35,507 DEBUG Processing 732/852 atomic regions from SNP 219559 to 220159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,575 DEBUG Processing 748/889 atomic regions from SNP 224381 to 224981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,601 DEBUG Processing 635/1018 atomic regions from SNP 190380 to 190980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,659 DEBUG Processing 516/645 atomic regions from SNP 154799 to 155399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,756 DEBUG Processing 584/1129 atomic regions from SNP 175172 to 175772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,760 DEBUG Processing 733/852 atomic regions from SNP 219859 to 220459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,826 DEBUG Processing 749/889 atomic regions from SNP 224681 to 225281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,873 DEBUG Processing 636/1018 atomic regions from SNP 190680 to 191280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,931 DEBUG Processing 517/645 atomic regions from SNP 155099 to 155699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,011 DEBUG Processing 734/852 atomic regions from SNP 220159 to 220759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,043 DEBUG Processing 585/1129 atomic regions from SNP 175472 to 176072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,078 DEBUG Processing 750/889 atomic regions from SNP 224981 to 225581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,155 DEBUG Processing 637/1018 atomic regions from SNP 190980 to 191580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,198 DEBUG Processing 518/645 atomic regions from SNP 155399 to 155999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,259 DEBUG Processing 735/852 atomic regions from SNP 220459 to 221059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,326 DEBUG Processing 586/1129 atomic regions from SNP 175772 to 176372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,329 DEBUG Processing 751/889 atomic regions from SNP 225281 to 225881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,439 DEBUG Processing 638/1018 atomic regions from SNP 191280 to 191880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,458 DEBUG Processing 519/645 atomic regions from SNP 155699 to 156299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,505 DEBUG Processing 736/852 atomic regions from SNP 220759 to 221359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,601 DEBUG Processing 587/1129 atomic regions from SNP 176072 to 176672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,604 DEBUG Processing 752/889 atomic regions from SNP 225581 to 226181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,719 DEBUG Processing 639/1018 atomic regions from SNP 191580 to 192180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,737 DEBUG Processing 520/645 atomic regions from SNP 155999 to 156599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,752 DEBUG Processing 737/852 atomic regions from SNP 221059 to 221659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,875 DEBUG Processing 588/1129 atomic regions from SNP 176372 to 176972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,879 DEBUG Processing 753/889 atomic regions from SNP 225881 to 226481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,984 DEBUG Processing 640/1018 atomic regions from SNP 191880 to 192480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,004 DEBUG Processing 738/852 atomic regions from SNP 221359 to 221959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,023 DEBUG Processing 521/645 atomic regions from SNP 156299 to 156899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,141 DEBUG Processing 589/1129 atomic regions from SNP 176672 to 177272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,143 DEBUG Processing 754/889 atomic regions from SNP 226181 to 226781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,251 DEBUG Processing 641/1018 atomic regions from SNP 192180 to 192780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,256 DEBUG Processing 739/852 atomic regions from SNP 221659 to 222259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,309 DEBUG Processing 522/645 atomic regions from SNP 156599 to 157199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,407 DEBUG Processing 590/1129 atomic regions from SNP 176972 to 177572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,408 DEBUG Processing 755/889 atomic regions from SNP 226481 to 227081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,512 DEBUG Processing 740/852 atomic regions from SNP 221959 to 222559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,526 DEBUG Processing 642/1018 atomic regions from SNP 192480 to 193080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,595 DEBUG Processing 523/645 atomic regions from SNP 156899 to 157499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,667 DEBUG Processing 756/889 atomic regions from SNP 226781 to 227381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,676 DEBUG Processing 591/1129 atomic regions from SNP 177272 to 177872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,769 DEBUG Processing 741/852 atomic regions from SNP 222259 to 222859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,803 DEBUG Processing 643/1018 atomic regions from SNP 192780 to 193380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,882 DEBUG Processing 524/645 atomic regions from SNP 157199 to 157799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,925 DEBUG Processing 757/889 atomic regions from SNP 227081 to 227681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,967 DEBUG Processing 592/1129 atomic regions from SNP 177572 to 178172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,032 DEBUG Processing 742/852 atomic regions from SNP 222559 to 223159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,078 DEBUG Processing 644/1018 atomic regions from SNP 193080 to 193680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,163 DEBUG Processing 525/645 atomic regions from SNP 157499 to 158099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,175 DEBUG Processing 758/889 atomic regions from SNP 227381 to 227981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,253 DEBUG Processing 593/1129 atomic regions from SNP 177872 to 178472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,286 DEBUG Processing 743/852 atomic regions from SNP 222859 to 223459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,348 DEBUG Processing 645/1018 atomic regions from SNP 193380 to 193980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,424 DEBUG Processing 759/889 atomic regions from SNP 227681 to 228281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,441 DEBUG Processing 526/645 atomic regions from SNP 157799 to 158399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,546 DEBUG Processing 744/852 atomic regions from SNP 223159 to 223759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,550 DEBUG Processing 594/1129 atomic regions from SNP 178172 to 178772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,628 DEBUG Processing 646/1018 atomic regions from SNP 193680 to 194280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,696 DEBUG Processing 760/889 atomic regions from SNP 227981 to 228581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,719 DEBUG Processing 527/645 atomic regions from SNP 158099 to 158699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,806 DEBUG Processing 745/852 atomic regions from SNP 223459 to 224059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,843 DEBUG Processing 595/1129 atomic regions from SNP 178472 to 179072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,904 DEBUG Processing 647/1018 atomic regions from SNP 193980 to 194580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,949 DEBUG Processing 761/889 atomic regions from SNP 228281 to 228881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,000 DEBUG Processing 528/645 atomic regions from SNP 158399 to 158999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,061 DEBUG Processing 746/852 atomic regions from SNP 223759 to 224359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,135 DEBUG Processing 596/1129 atomic regions from SNP 178772 to 179372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,185 DEBUG Processing 648/1018 atomic regions from SNP 194280 to 194880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,201 DEBUG Processing 762/889 atomic regions from SNP 228581 to 229181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,282 DEBUG Processing 529/645 atomic regions from SNP 158699 to 159299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,345 DEBUG Processing 747/852 atomic regions from SNP 224059 to 224659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,422 DEBUG Processing 597/1129 atomic regions from SNP 179072 to 179672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,457 DEBUG Processing 763/889 atomic regions from SNP 228881 to 229481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,466 DEBUG Processing 649/1018 atomic regions from SNP 194580 to 195180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,559 DEBUG Processing 530/645 atomic regions from SNP 158999 to 159599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,625 DEBUG Processing 748/852 atomic regions from SNP 224359 to 224959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,714 DEBUG Processing 598/1129 atomic regions from SNP 179372 to 179972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,715 DEBUG Processing 764/889 atomic regions from SNP 229181 to 229781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,751 DEBUG Processing 650/1018 atomic regions from SNP 194880 to 195480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,837 DEBUG Processing 531/645 atomic regions from SNP 159299 to 159899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,896 DEBUG Processing 749/852 atomic regions from SNP 224659 to 225259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,973 DEBUG Processing 765/889 atomic regions from SNP 229481 to 230081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,029 DEBUG Processing 599/1129 atomic regions from SNP 179672 to 180272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,037 DEBUG Processing 651/1018 atomic regions from SNP 195180 to 195780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,126 DEBUG Processing 532/645 atomic regions from SNP 159599 to 160199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,177 DEBUG Processing 750/852 atomic regions from SNP 224959 to 225559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,220 DEBUG Processing 766/889 atomic regions from SNP 229781 to 230381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,323 DEBUG Processing 652/1018 atomic regions from SNP 195480 to 196080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,344 DEBUG Processing 600/1129 atomic regions from SNP 179972 to 180572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,418 DEBUG Processing 533/645 atomic regions from SNP 159899 to 160499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,444 DEBUG Processing 751/852 atomic regions from SNP 225259 to 225859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,460 DEBUG Processing 767/889 atomic regions from SNP 230081 to 230681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,605 DEBUG Processing 653/1018 atomic regions from SNP 195780 to 196380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,650 DEBUG Processing 601/1129 atomic regions from SNP 180272 to 180872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,698 DEBUG Processing 534/645 atomic regions from SNP 160199 to 160799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,702 DEBUG Processing 768/889 atomic regions from SNP 230381 to 230981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,737 DEBUG Processing 752/852 atomic regions from SNP 225559 to 226159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,887 DEBUG Processing 654/1018 atomic regions from SNP 196080 to 196680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,945 DEBUG Processing 602/1129 atomic regions from SNP 180572 to 181172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,953 DEBUG Processing 769/889 atomic regions from SNP 230681 to 231281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,965 DEBUG Processing 535/645 atomic regions from SNP 160499 to 161099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,033 DEBUG Processing 753/852 atomic regions from SNP 225859 to 226459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,169 DEBUG Processing 655/1018 atomic regions from SNP 196380 to 196980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,207 DEBUG Processing 770/889 atomic regions from SNP 230981 to 231581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,248 DEBUG Processing 536/645 atomic regions from SNP 160799 to 161399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,252 DEBUG Processing 603/1129 atomic regions from SNP 180872 to 181472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,315 DEBUG Processing 754/852 atomic regions from SNP 226159 to 226759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,442 DEBUG Processing 656/1018 atomic regions from SNP 196680 to 197280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,460 DEBUG Processing 771/889 atomic regions from SNP 231281 to 231881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,527 DEBUG Processing 537/645 atomic regions from SNP 161099 to 161699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,572 DEBUG Processing 604/1129 atomic regions from SNP 181172 to 181772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,591 DEBUG Processing 755/852 atomic regions from SNP 226459 to 227059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,711 DEBUG Processing 772/889 atomic regions from SNP 231581 to 232181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,714 DEBUG Processing 657/1018 atomic regions from SNP 196980 to 197580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,808 DEBUG Processing 538/645 atomic regions from SNP 161399 to 161999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,868 DEBUG Processing 756/852 atomic regions from SNP 226759 to 227359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,869 DEBUG Processing 605/1129 atomic regions from SNP 181472 to 182072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,960 DEBUG Processing 773/889 atomic regions from SNP 231881 to 232481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,988 DEBUG Processing 658/1018 atomic regions from SNP 197280 to 197880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,080 DEBUG Processing 539/645 atomic regions from SNP 161699 to 162299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,153 DEBUG Processing 757/852 atomic regions from SNP 227059 to 227659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,166 DEBUG Processing 606/1129 atomic regions from SNP 181772 to 182372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,210 DEBUG Processing 774/889 atomic regions from SNP 232181 to 232781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,260 DEBUG Processing 659/1018 atomic regions from SNP 197580 to 198180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,366 DEBUG Processing 540/645 atomic regions from SNP 161999 to 162599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,448 DEBUG Processing 758/852 atomic regions from SNP 227359 to 227959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,456 DEBUG Processing 775/889 atomic regions from SNP 232481 to 233081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,457 DEBUG Processing 607/1129 atomic regions from SNP 182072 to 182672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,531 DEBUG Processing 660/1018 atomic regions from SNP 197880 to 198480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,655 DEBUG Processing 541/645 atomic regions from SNP 162299 to 162899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,703 DEBUG Processing 776/889 atomic regions from SNP 232781 to 233381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,739 DEBUG Processing 759/852 atomic regions from SNP 227659 to 228259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,744 DEBUG Processing 608/1129 atomic regions from SNP 182372 to 182972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,810 DEBUG Processing 661/1018 atomic regions from SNP 198180 to 198780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,943 DEBUG Processing 777/889 atomic regions from SNP 233081 to 233681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,944 DEBUG Processing 542/645 atomic regions from SNP 162599 to 163199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,009 DEBUG Processing 760/852 atomic regions from SNP 227959 to 228559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,026 DEBUG Processing 609/1129 atomic regions from SNP 182672 to 183272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,088 DEBUG Processing 662/1018 atomic regions from SNP 198480 to 199080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,192 DEBUG Processing 778/889 atomic regions from SNP 233381 to 233981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,228 DEBUG Processing 543/645 atomic regions from SNP 162899 to 163499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,255 DEBUG Processing 761/852 atomic regions from SNP 228259 to 228859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,304 DEBUG Processing 610/1129 atomic regions from SNP 182972 to 183572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,366 DEBUG Processing 663/1018 atomic regions from SNP 198780 to 199380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,449 DEBUG Processing 779/889 atomic regions from SNP 233681 to 234281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,505 DEBUG Processing 762/852 atomic regions from SNP 228559 to 229159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,512 DEBUG Processing 544/645 atomic regions from SNP 163199 to 163799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,588 DEBUG Processing 611/1129 atomic regions from SNP 183272 to 183872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,639 DEBUG Processing 664/1018 atomic regions from SNP 199080 to 199680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,708 DEBUG Processing 780/889 atomic regions from SNP 233981 to 234581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,766 DEBUG Processing 763/852 atomic regions from SNP 228859 to 229459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,781 DEBUG Processing 545/645 atomic regions from SNP 163499 to 164099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,869 DEBUG Processing 612/1129 atomic regions from SNP 183572 to 184172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,913 DEBUG Processing 665/1018 atomic regions from SNP 199380 to 199980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,961 DEBUG Processing 781/889 atomic regions from SNP 234281 to 234881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,043 DEBUG Processing 764/852 atomic regions from SNP 229159 to 229759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,068 DEBUG Processing 546/645 atomic regions from SNP 163799 to 164399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,158 DEBUG Processing 613/1129 atomic regions from SNP 183872 to 184472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,185 DEBUG Processing 666/1018 atomic regions from SNP 199680 to 200280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,208 DEBUG Processing 782/889 atomic regions from SNP 234581 to 235181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,335 DEBUG Processing 765/852 atomic regions from SNP 229459 to 230059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,360 DEBUG Processing 547/645 atomic regions from SNP 164099 to 164699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,448 DEBUG Processing 614/1129 atomic regions from SNP 184172 to 184772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,458 DEBUG Processing 667/1018 atomic regions from SNP 199980 to 200580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,461 DEBUG Processing 783/889 atomic regions from SNP 234881 to 235481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,626 DEBUG Processing 548/645 atomic regions from SNP 164399 to 164999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,627 DEBUG Processing 766/852 atomic regions from SNP 229759 to 230359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,716 DEBUG Processing 784/889 atomic regions from SNP 235181 to 235781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,737 DEBUG Processing 668/1018 atomic regions from SNP 200280 to 200880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,744 DEBUG Processing 615/1129 atomic regions from SNP 184472 to 185072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,889 DEBUG Processing 549/645 atomic regions from SNP 164699 to 165299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,918 DEBUG Processing 767/852 atomic regions from SNP 230059 to 230659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,972 DEBUG Processing 785/889 atomic regions from SNP 235481 to 236081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,020 DEBUG Processing 669/1018 atomic regions from SNP 200580 to 201180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,032 DEBUG Processing 616/1129 atomic regions from SNP 184772 to 185372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,163 DEBUG Processing 550/645 atomic regions from SNP 164999 to 165599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,215 DEBUG Processing 768/852 atomic regions from SNP 230359 to 230959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,226 DEBUG Processing 786/889 atomic regions from SNP 235781 to 236381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,301 DEBUG Processing 670/1018 atomic regions from SNP 200880 to 201480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,316 DEBUG Processing 617/1129 atomic regions from SNP 185072 to 185672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,440 DEBUG Processing 551/645 atomic regions from SNP 165299 to 165899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,471 DEBUG Processing 787/889 atomic regions from SNP 236081 to 236681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,509 DEBUG Processing 769/852 atomic regions from SNP 230659 to 231259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,584 DEBUG Processing 671/1018 atomic regions from SNP 201180 to 201780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,602 DEBUG Processing 618/1129 atomic regions from SNP 185372 to 185972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,712 DEBUG Processing 788/889 atomic regions from SNP 236381 to 236981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,723 DEBUG Processing 552/645 atomic regions from SNP 165599 to 166199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,786 DEBUG Processing 770/852 atomic regions from SNP 230959 to 231559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,862 DEBUG Processing 672/1018 atomic regions from SNP 201480 to 202080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,894 DEBUG Processing 619/1129 atomic regions from SNP 185672 to 186272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,963 DEBUG Processing 789/889 atomic regions from SNP 236681 to 237281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,000 DEBUG Processing 553/645 atomic regions from SNP 165899 to 166499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,064 DEBUG Processing 771/852 atomic regions from SNP 231259 to 231859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,136 DEBUG Processing 673/1018 atomic regions from SNP 201780 to 202380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,186 DEBUG Processing 620/1129 atomic regions from SNP 185972 to 186572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,217 DEBUG Processing 790/889 atomic regions from SNP 236981 to 237581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,269 DEBUG Processing 554/645 atomic regions from SNP 166199 to 166799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,344 DEBUG Processing 772/852 atomic regions from SNP 231559 to 232159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,412 DEBUG Processing 674/1018 atomic regions from SNP 202080 to 202680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,479 DEBUG Processing 791/889 atomic regions from SNP 237281 to 237881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,480 DEBUG Processing 621/1129 atomic regions from SNP 186272 to 186872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,549 DEBUG Processing 555/645 atomic regions from SNP 166499 to 167099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,603 DEBUG Processing 773/852 atomic regions from SNP 231859 to 232459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,691 DEBUG Processing 675/1018 atomic regions from SNP 202380 to 202980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,736 DEBUG Processing 792/889 atomic regions from SNP 237581 to 238181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,765 DEBUG Processing 622/1129 atomic regions from SNP 186572 to 187172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,824 DEBUG Processing 556/645 atomic regions from SNP 166799 to 167399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,859 DEBUG Processing 774/852 atomic regions from SNP 232159 to 232759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,985 DEBUG Processing 676/1018 atomic regions from SNP 202680 to 203280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,989 DEBUG Processing 793/889 atomic regions from SNP 237881 to 238481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,051 DEBUG Processing 623/1129 atomic regions from SNP 186872 to 187472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,093 DEBUG Processing 557/645 atomic regions from SNP 167099 to 167699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,117 DEBUG Processing 775/852 atomic regions from SNP 232459 to 233059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,242 DEBUG Processing 794/889 atomic regions from SNP 238181 to 238781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,296 DEBUG Processing 677/1018 atomic regions from SNP 202980 to 203580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,341 DEBUG Processing 624/1129 atomic regions from SNP 187172 to 187772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,347 DEBUG Processing 558/645 atomic regions from SNP 167399 to 167999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,382 DEBUG Processing 776/852 atomic regions from SNP 232759 to 233359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,490 DEBUG Processing 795/889 atomic regions from SNP 238481 to 239081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,598 DEBUG Processing 678/1018 atomic regions from SNP 203280 to 203880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,599 DEBUG Processing 559/645 atomic regions from SNP 167699 to 168299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,637 DEBUG Processing 625/1129 atomic regions from SNP 187472 to 188072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,668 DEBUG Processing 777/852 atomic regions from SNP 233059 to 233659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,744 DEBUG Processing 796/889 atomic regions from SNP 238781 to 239381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,851 DEBUG Processing 560/645 atomic regions from SNP 167999 to 168599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,900 DEBUG Processing 679/1018 atomic regions from SNP 203580 to 204180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,939 DEBUG Processing 626/1129 atomic regions from SNP 187772 to 188372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,972 DEBUG Processing 778/852 atomic regions from SNP 233359 to 233959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,001 DEBUG Processing 797/889 atomic regions from SNP 239081 to 239681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,127 DEBUG Processing 561/645 atomic regions from SNP 168299 to 168899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,214 DEBUG Processing 680/1018 atomic regions from SNP 203880 to 204480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,245 DEBUG Processing 627/1129 atomic regions from SNP 188072 to 188672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,265 DEBUG Processing 798/889 atomic regions from SNP 239381 to 239981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,272 DEBUG Processing 779/852 atomic regions from SNP 233659 to 234259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,404 DEBUG Processing 562/645 atomic regions from SNP 168599 to 169199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,515 DEBUG Processing 681/1018 atomic regions from SNP 204180 to 204780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,529 DEBUG Processing 799/889 atomic regions from SNP 239681 to 240281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,548 DEBUG Processing 628/1129 atomic regions from SNP 188372 to 188972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,555 DEBUG Processing 780/852 atomic regions from SNP 233959 to 234559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,688 DEBUG Processing 563/645 atomic regions from SNP 168899 to 169499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,792 DEBUG Processing 800/889 atomic regions from SNP 239981 to 240581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,823 DEBUG Processing 682/1018 atomic regions from SNP 204480 to 205080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,839 DEBUG Processing 629/1129 atomic regions from SNP 188672 to 189272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,849 DEBUG Processing 781/852 atomic regions from SNP 234259 to 234859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,985 DEBUG Processing 564/645 atomic regions from SNP 169199 to 169799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,051 DEBUG Processing 801/889 atomic regions from SNP 240281 to 240881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,121 DEBUG Processing 683/1018 atomic regions from SNP 204780 to 205380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,125 DEBUG Processing 630/1129 atomic regions from SNP 188972 to 189572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,137 DEBUG Processing 782/852 atomic regions from SNP 234559 to 235159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,270 DEBUG Processing 565/645 atomic regions from SNP 169499 to 170099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,301 DEBUG Processing 802/889 atomic regions from SNP 240581 to 241181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,395 DEBUG Processing 684/1018 atomic regions from SNP 205080 to 205680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,411 DEBUG Processing 783/852 atomic regions from SNP 234859 to 235459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,412 DEBUG Processing 631/1129 atomic regions from SNP 189272 to 189872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,545 DEBUG Processing 566/645 atomic regions from SNP 169799 to 170399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,550 DEBUG Processing 803/889 atomic regions from SNP 240881 to 241481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,682 DEBUG Processing 685/1018 atomic regions from SNP 205380 to 205980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,685 DEBUG Processing 784/852 atomic regions from SNP 235159 to 235759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,703 DEBUG Processing 632/1129 atomic regions from SNP 189572 to 190172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,800 DEBUG Processing 804/889 atomic regions from SNP 241181 to 241781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,829 DEBUG Processing 567/645 atomic regions from SNP 170099 to 170699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,964 DEBUG Processing 686/1018 atomic regions from SNP 205680 to 206280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,980 DEBUG Processing 785/852 atomic regions from SNP 235459 to 236059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,991 DEBUG Processing 633/1129 atomic regions from SNP 189872 to 190472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,066 DEBUG Processing 805/889 atomic regions from SNP 241481 to 242081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,116 DEBUG Processing 568/645 atomic regions from SNP 170399 to 170999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,231 DEBUG Processing 687/1018 atomic regions from SNP 205980 to 206580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,270 DEBUG Processing 786/852 atomic regions from SNP 235759 to 236359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,279 DEBUG Processing 634/1129 atomic regions from SNP 190172 to 190772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,319 DEBUG Processing 806/889 atomic regions from SNP 241781 to 242381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,402 DEBUG Processing 569/645 atomic regions from SNP 170699 to 171299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,510 DEBUG Processing 688/1018 atomic regions from SNP 206280 to 206880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,560 DEBUG Processing 787/852 atomic regions from SNP 236059 to 236659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,563 DEBUG Processing 635/1129 atomic regions from SNP 190472 to 191072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,572 DEBUG Processing 807/889 atomic regions from SNP 242081 to 242681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,662 DEBUG Processing 570/645 atomic regions from SNP 170999 to 171599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,792 DEBUG Processing 689/1018 atomic regions from SNP 206580 to 207180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,824 DEBUG Processing 808/889 atomic regions from SNP 242381 to 242981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,828 DEBUG Processing 788/852 atomic regions from SNP 236359 to 236959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,852 DEBUG Processing 636/1129 atomic regions from SNP 190772 to 191372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,926 DEBUG Processing 571/645 atomic regions from SNP 171299 to 171899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,062 DEBUG Processing 690/1018 atomic regions from SNP 206880 to 207480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,067 DEBUG Processing 809/889 atomic regions from SNP 242681 to 243281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,079 DEBUG Processing 789/852 atomic regions from SNP 236659 to 237259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,140 DEBUG Processing 637/1129 atomic regions from SNP 191072 to 191672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,190 DEBUG Processing 572/645 atomic regions from SNP 171599 to 172199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,317 DEBUG Processing 810/889 atomic regions from SNP 242981 to 243581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,329 DEBUG Processing 790/852 atomic regions from SNP 236959 to 237559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,344 DEBUG Processing 691/1018 atomic regions from SNP 207180 to 207780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,427 DEBUG Processing 638/1129 atomic regions from SNP 191372 to 191972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,449 DEBUG Processing 573/645 atomic regions from SNP 171899 to 172499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,567 DEBUG Processing 811/889 atomic regions from SNP 243281 to 243881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,584 DEBUG Processing 791/852 atomic regions from SNP 237259 to 237859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,623 DEBUG Processing 692/1018 atomic regions from SNP 207480 to 208080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,702 DEBUG Processing 574/645 atomic regions from SNP 172199 to 172799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,713 DEBUG Processing 639/1129 atomic regions from SNP 191672 to 192272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,824 DEBUG Processing 812/889 atomic regions from SNP 243581 to 244181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,843 DEBUG Processing 792/852 atomic regions from SNP 237559 to 238159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,917 DEBUG Processing 693/1018 atomic regions from SNP 207780 to 208380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,945 DEBUG Processing 575/645 atomic regions from SNP 172499 to 173099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,999 DEBUG Processing 640/1129 atomic regions from SNP 191972 to 192572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,087 DEBUG Processing 813/889 atomic regions from SNP 243881 to 244481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,112 DEBUG Processing 793/852 atomic regions from SNP 237859 to 238459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,188 DEBUG Processing 576/645 atomic regions from SNP 172799 to 173399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,217 DEBUG Processing 694/1018 atomic regions from SNP 208080 to 208680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,278 DEBUG Processing 641/1129 atomic regions from SNP 192272 to 192872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,346 DEBUG Processing 814/889 atomic regions from SNP 244181 to 244781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,383 DEBUG Processing 794/852 atomic regions from SNP 238159 to 238759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,444 DEBUG Processing 577/645 atomic regions from SNP 173099 to 173699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,478 DEBUG Processing 695/1018 atomic regions from SNP 208380 to 208980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,562 DEBUG Processing 642/1129 atomic regions from SNP 192572 to 193172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,600 DEBUG Processing 815/889 atomic regions from SNP 244481 to 245081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,651 DEBUG Processing 795/852 atomic regions from SNP 238459 to 239059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,703 DEBUG Processing 578/645 atomic regions from SNP 173399 to 173999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,752 DEBUG Processing 696/1018 atomic regions from SNP 208680 to 209280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,846 DEBUG Processing 643/1129 atomic regions from SNP 192872 to 193472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,850 DEBUG Processing 816/889 atomic regions from SNP 244781 to 245381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,911 DEBUG Processing 796/852 atomic regions from SNP 238759 to 239359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,967 DEBUG Processing 579/645 atomic regions from SNP 173699 to 174299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,032 DEBUG Processing 697/1018 atomic regions from SNP 208980 to 209580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,087 DEBUG Processing 817/889 atomic regions from SNP 245081 to 245681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,135 DEBUG Processing 644/1129 atomic regions from SNP 193172 to 193772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,171 DEBUG Processing 797/852 atomic regions from SNP 239059 to 239659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,221 DEBUG Processing 580/645 atomic regions from SNP 173999 to 174599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,324 DEBUG Processing 698/1018 atomic regions from SNP 209280 to 209880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,336 DEBUG Processing 818/889 atomic regions from SNP 245381 to 245981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,425 DEBUG Processing 645/1129 atomic regions from SNP 193472 to 194072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,456 DEBUG Processing 798/852 atomic regions from SNP 239359 to 239959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,471 DEBUG Processing 581/645 atomic regions from SNP 174299 to 174899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,593 DEBUG Processing 819/889 atomic regions from SNP 245681 to 246281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,628 DEBUG Processing 699/1018 atomic regions from SNP 209580 to 210180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,724 DEBUG Processing 646/1129 atomic regions from SNP 193772 to 194372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,726 DEBUG Processing 582/645 atomic regions from SNP 174599 to 175199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,745 DEBUG Processing 799/852 atomic regions from SNP 239659 to 240259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,850 DEBUG Processing 820/889 atomic regions from SNP 245981 to 246581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,933 DEBUG Processing 700/1018 atomic regions from SNP 209880 to 210480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,986 DEBUG Processing 583/645 atomic regions from SNP 174899 to 175499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,024 DEBUG Processing 647/1129 atomic regions from SNP 194072 to 194672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,043 DEBUG Processing 800/852 atomic regions from SNP 239959 to 240559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,099 DEBUG Processing 821/889 atomic regions from SNP 246281 to 246881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,207 DEBUG Processing 701/1018 atomic regions from SNP 210180 to 210780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,246 DEBUG Processing 584/645 atomic regions from SNP 175199 to 175799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,324 DEBUG Processing 648/1129 atomic regions from SNP 194372 to 194972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,338 DEBUG Processing 801/852 atomic regions from SNP 240259 to 240859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,352 DEBUG Processing 822/889 atomic regions from SNP 246581 to 247181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,476 DEBUG Processing 702/1018 atomic regions from SNP 210480 to 211080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,497 DEBUG Processing 585/645 atomic regions from SNP 175499 to 176099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,606 DEBUG Processing 823/889 atomic regions from SNP 246881 to 247481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,615 DEBUG Processing 802/852 atomic regions from SNP 240559 to 241159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,620 DEBUG Processing 649/1129 atomic regions from SNP 194672 to 195272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,746 DEBUG Processing 703/1018 atomic regions from SNP 210780 to 211380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,760 DEBUG Processing 586/645 atomic regions from SNP 175799 to 176399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,859 DEBUG Processing 824/889 atomic regions from SNP 247181 to 247781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,907 DEBUG Processing 803/852 atomic regions from SNP 240859 to 241459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,923 DEBUG Processing 650/1129 atomic regions from SNP 194972 to 195572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,016 DEBUG Processing 587/645 atomic regions from SNP 176099 to 176699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,018 DEBUG Processing 704/1018 atomic regions from SNP 211080 to 211680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,107 DEBUG Processing 825/889 atomic regions from SNP 247481 to 248081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,192 DEBUG Processing 804/852 atomic regions from SNP 241159 to 241759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,214 DEBUG Processing 651/1129 atomic regions from SNP 195272 to 195872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,272 DEBUG Processing 588/645 atomic regions from SNP 176399 to 176999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,298 DEBUG Processing 705/1018 atomic regions from SNP 211380 to 211980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,356 DEBUG Processing 826/889 atomic regions from SNP 247781 to 248381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,475 DEBUG Processing 805/852 atomic regions from SNP 241459 to 242059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,505 DEBUG Processing 652/1129 atomic regions from SNP 195572 to 196172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,533 DEBUG Processing 589/645 atomic regions from SNP 176699 to 177299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,583 DEBUG Processing 706/1018 atomic regions from SNP 211680 to 212280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,609 DEBUG Processing 827/889 atomic regions from SNP 248081 to 248681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,755 DEBUG Processing 806/852 atomic regions from SNP 241759 to 242359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,792 DEBUG Processing 590/645 atomic regions from SNP 176999 to 177599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,799 DEBUG Processing 653/1129 atomic regions from SNP 195872 to 196472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,867 DEBUG Processing 828/889 atomic regions from SNP 248381 to 248981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,867 DEBUG Processing 707/1018 atomic regions from SNP 211980 to 212580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,032 DEBUG Processing 807/852 atomic regions from SNP 242059 to 242659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,049 DEBUG Processing 591/645 atomic regions from SNP 177299 to 177899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,102 DEBUG Processing 654/1129 atomic regions from SNP 196172 to 196772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,123 DEBUG Processing 829/889 atomic regions from SNP 248681 to 249281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,150 DEBUG Processing 708/1018 atomic regions from SNP 212280 to 212880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,306 DEBUG Processing 808/852 atomic regions from SNP 242359 to 242959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,307 DEBUG Processing 592/645 atomic regions from SNP 177599 to 178199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,378 DEBUG Processing 830/889 atomic regions from SNP 248981 to 249581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,394 DEBUG Processing 655/1129 atomic regions from SNP 196472 to 197072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,434 DEBUG Processing 709/1018 atomic regions from SNP 212580 to 213180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,571 DEBUG Processing 593/645 atomic regions from SNP 177899 to 178499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,596 DEBUG Processing 809/852 atomic regions from SNP 242659 to 243259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,625 DEBUG Processing 831/889 atomic regions from SNP 249281 to 249881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,681 DEBUG Processing 656/1129 atomic regions from SNP 196772 to 197372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,713 DEBUG Processing 710/1018 atomic regions from SNP 212880 to 213480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,859 DEBUG Processing 594/645 atomic regions from SNP 178199 to 178799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,859 DEBUG Processing 810/852 atomic regions from SNP 242959 to 243559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,878 DEBUG Processing 832/889 atomic regions from SNP 249581 to 250181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,973 DEBUG Processing 657/1129 atomic regions from SNP 197072 to 197672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,984 DEBUG Processing 711/1018 atomic regions from SNP 213180 to 213780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,119 DEBUG Processing 811/852 atomic regions from SNP 243259 to 243859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,133 DEBUG Processing 833/889 atomic regions from SNP 249881 to 250481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,156 DEBUG Processing 595/645 atomic regions from SNP 178499 to 179099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,258 DEBUG Processing 712/1018 atomic regions from SNP 213480 to 214080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,267 DEBUG Processing 658/1129 atomic regions from SNP 197372 to 197972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,381 DEBUG Processing 812/852 atomic regions from SNP 243559 to 244159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,390 DEBUG Processing 834/889 atomic regions from SNP 250181 to 250781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,433 DEBUG Processing 596/645 atomic regions from SNP 178799 to 179399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,519 DEBUG Processing 713/1018 atomic regions from SNP 213780 to 214380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,560 DEBUG Processing 659/1129 atomic regions from SNP 197672 to 198272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,646 DEBUG Processing 835/889 atomic regions from SNP 250481 to 251081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,657 DEBUG Processing 813/852 atomic regions from SNP 243859 to 244459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,713 DEBUG Processing 597/645 atomic regions from SNP 179099 to 179699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,794 DEBUG Processing 714/1018 atomic regions from SNP 214080 to 214680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,863 DEBUG Processing 660/1129 atomic regions from SNP 197972 to 198572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,901 DEBUG Processing 836/889 atomic regions from SNP 250781 to 251381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,946 DEBUG Processing 814/852 atomic regions from SNP 244159 to 244759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,996 DEBUG Processing 598/645 atomic regions from SNP 179399 to 179999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,072 DEBUG Processing 715/1018 atomic regions from SNP 214380 to 214980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,149 DEBUG Processing 837/889 atomic regions from SNP 251081 to 251681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,162 DEBUG Processing 661/1129 atomic regions from SNP 198272 to 198872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,238 DEBUG Processing 815/852 atomic regions from SNP 244459 to 245059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,289 DEBUG Processing 599/645 atomic regions from SNP 179699 to 180299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,362 DEBUG Processing 716/1018 atomic regions from SNP 214680 to 215280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,391 DEBUG Processing 838/889 atomic regions from SNP 251381 to 251981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,452 DEBUG Processing 662/1129 atomic regions from SNP 198572 to 199172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,497 DEBUG Processing 816/852 atomic regions from SNP 244759 to 245359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,579 DEBUG Processing 600/645 atomic regions from SNP 179999 to 180599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,637 DEBUG Processing 839/889 atomic regions from SNP 251681 to 252281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,639 DEBUG Processing 717/1018 atomic regions from SNP 214980 to 215580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,731 DEBUG Processing 663/1129 atomic regions from SNP 198872 to 199472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,752 DEBUG Processing 817/852 atomic regions from SNP 245059 to 245659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,868 DEBUG Processing 601/645 atomic regions from SNP 180299 to 180899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,887 DEBUG Processing 840/889 atomic regions from SNP 251981 to 252581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,919 DEBUG Processing 718/1018 atomic regions from SNP 215280 to 215880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,004 DEBUG Processing 818/852 atomic regions from SNP 245359 to 245959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,014 DEBUG Processing 664/1129 atomic regions from SNP 199172 to 199772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,141 DEBUG Processing 841/889 atomic regions from SNP 252281 to 252881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,146 DEBUG Processing 602/645 atomic regions from SNP 180599 to 181199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,209 DEBUG Processing 719/1018 atomic regions from SNP 215580 to 216180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,253 DEBUG Processing 819/852 atomic regions from SNP 245659 to 246259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,299 DEBUG Processing 665/1129 atomic regions from SNP 199472 to 200072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,394 DEBUG Processing 842/889 atomic regions from SNP 252581 to 253181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,414 DEBUG Processing 603/645 atomic regions from SNP 180899 to 181499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,490 DEBUG Processing 720/1018 atomic regions from SNP 215880 to 216480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,514 DEBUG Processing 820/852 atomic regions from SNP 245959 to 246559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,602 DEBUG Processing 666/1129 atomic regions from SNP 199772 to 200372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,647 DEBUG Processing 843/889 atomic regions from SNP 252881 to 253481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,683 DEBUG Processing 604/645 atomic regions from SNP 181199 to 181799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,760 DEBUG Processing 721/1018 atomic regions from SNP 216180 to 216780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,775 DEBUG Processing 821/852 atomic regions from SNP 246259 to 246859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,893 DEBUG Processing 844/889 atomic regions from SNP 253181 to 253781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,921 DEBUG Processing 667/1129 atomic regions from SNP 200072 to 200672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,965 DEBUG Processing 605/645 atomic regions from SNP 181499 to 182099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,035 DEBUG Processing 722/1018 atomic regions from SNP 216480 to 217080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,050 DEBUG Processing 822/852 atomic regions from SNP 246559 to 247159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,138 DEBUG Processing 845/889 atomic regions from SNP 253481 to 254081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,225 DEBUG Processing 668/1129 atomic regions from SNP 200372 to 200972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,230 DEBUG Processing 606/645 atomic regions from SNP 181799 to 182399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,318 DEBUG Processing 723/1018 atomic regions from SNP 216780 to 217380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,344 DEBUG Processing 823/852 atomic regions from SNP 246859 to 247459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,384 DEBUG Processing 846/889 atomic regions from SNP 253781 to 254381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,505 DEBUG Processing 669/1129 atomic regions from SNP 200672 to 201272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,507 DEBUG Processing 607/645 atomic regions from SNP 182099 to 182699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,605 DEBUG Processing 724/1018 atomic regions from SNP 217080 to 217680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,635 DEBUG Processing 847/889 atomic regions from SNP 254081 to 254681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,644 DEBUG Processing 824/852 atomic regions from SNP 247159 to 247759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,784 DEBUG Processing 670/1129 atomic regions from SNP 200972 to 201572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,787 DEBUG Processing 608/645 atomic regions from SNP 182399 to 182999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,882 DEBUG Processing 725/1018 atomic regions from SNP 217380 to 217980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,896 DEBUG Processing 848/889 atomic regions from SNP 254381 to 254981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,921 DEBUG Processing 825/852 atomic regions from SNP 247459 to 248059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,070 DEBUG Processing 609/645 atomic regions from SNP 182699 to 183299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,081 DEBUG Processing 671/1129 atomic regions from SNP 201272 to 201872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,156 DEBUG Processing 849/889 atomic regions from SNP 254681 to 255281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,164 DEBUG Processing 726/1018 atomic regions from SNP 217680 to 218280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,183 DEBUG Processing 826/852 atomic regions from SNP 247759 to 248359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,345 DEBUG Processing 610/645 atomic regions from SNP 182999 to 183599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,390 DEBUG Processing 672/1129 atomic regions from SNP 201572 to 202172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,407 DEBUG Processing 850/889 atomic regions from SNP 254981 to 255581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,452 DEBUG Processing 727/1018 atomic regions from SNP 217980 to 218580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,459 DEBUG Processing 827/852 atomic regions from SNP 248059 to 248659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,627 DEBUG Processing 611/645 atomic regions from SNP 183299 to 183899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,657 DEBUG Processing 851/889 atomic regions from SNP 255281 to 255881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,700 DEBUG Processing 673/1129 atomic regions from SNP 201872 to 202472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,727 DEBUG Processing 828/852 atomic regions from SNP 248359 to 248959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,750 DEBUG Processing 728/1018 atomic regions from SNP 218280 to 218880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,895 DEBUG Processing 612/645 atomic regions from SNP 183599 to 184199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,904 DEBUG Processing 852/889 atomic regions from SNP 255581 to 256181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,999 DEBUG Processing 829/852 atomic regions from SNP 248659 to 249259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,034 DEBUG Processing 674/1129 atomic regions from SNP 202172 to 202772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,050 DEBUG Processing 729/1018 atomic regions from SNP 218580 to 219180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,154 DEBUG Processing 853/889 atomic regions from SNP 255881 to 256481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,177 DEBUG Processing 613/645 atomic regions from SNP 183899 to 184499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,279 DEBUG Processing 830/852 atomic regions from SNP 248959 to 249559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,342 DEBUG Processing 730/1018 atomic regions from SNP 218880 to 219480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,356 DEBUG Processing 675/1129 atomic regions from SNP 202472 to 203072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,407 DEBUG Processing 854/889 atomic regions from SNP 256181 to 256781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,454 DEBUG Processing 614/645 atomic regions from SNP 184199 to 184799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,534 DEBUG Processing 831/852 atomic regions from SNP 249259 to 249859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,636 DEBUG Processing 731/1018 atomic regions from SNP 219180 to 219780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,658 DEBUG Processing 676/1129 atomic regions from SNP 202772 to 203372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,665 DEBUG Processing 855/889 atomic regions from SNP 256481 to 257081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,707 DEBUG Processing 615/645 atomic regions from SNP 184499 to 185099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,778 DEBUG Processing 832/852 atomic regions from SNP 249559 to 250159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,919 DEBUG Processing 732/1018 atomic regions from SNP 219480 to 220080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,922 DEBUG Processing 856/889 atomic regions from SNP 256781 to 257381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,962 DEBUG Processing 616/645 atomic regions from SNP 184799 to 185399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,981 DEBUG Processing 677/1129 atomic regions from SNP 203072 to 203672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,041 DEBUG Processing 833/852 atomic regions from SNP 249859 to 250459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,177 DEBUG Processing 857/889 atomic regions from SNP 257081 to 257681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,203 DEBUG Processing 733/1018 atomic regions from SNP 219780 to 220380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,222 DEBUG Processing 617/645 atomic regions from SNP 185099 to 185699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,307 DEBUG Processing 678/1129 atomic regions from SNP 203372 to 203972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,308 DEBUG Processing 834/852 atomic regions from SNP 250159 to 250759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,427 DEBUG Processing 858/889 atomic regions from SNP 257381 to 257981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,484 DEBUG Processing 734/1018 atomic regions from SNP 220080 to 220680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,487 DEBUG Processing 618/645 atomic regions from SNP 185399 to 185999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,571 DEBUG Processing 835/852 atomic regions from SNP 250459 to 251059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,632 DEBUG Processing 679/1129 atomic regions from SNP 203672 to 204272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,675 DEBUG Processing 859/889 atomic regions from SNP 257681 to 258281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,767 DEBUG Processing 735/1018 atomic regions from SNP 220380 to 220980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,783 DEBUG Processing 619/645 atomic regions from SNP 185699 to 186299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,840 DEBUG Processing 836/852 atomic regions from SNP 250759 to 251359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,925 DEBUG Processing 860/889 atomic regions from SNP 257981 to 258581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,936 DEBUG Processing 680/1129 atomic regions from SNP 203972 to 204572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,065 DEBUG Processing 736/1018 atomic regions from SNP 220680 to 221280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,078 DEBUG Processing 620/645 atomic regions from SNP 185999 to 186599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,128 DEBUG Processing 837/852 atomic regions from SNP 251059 to 251659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,174 DEBUG Processing 861/889 atomic regions from SNP 258281 to 258881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,235 DEBUG Processing 681/1129 atomic regions from SNP 204272 to 204872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,332 DEBUG Processing 737/1018 atomic regions from SNP 220980 to 221580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,368 DEBUG Processing 621/645 atomic regions from SNP 186299 to 186899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,416 DEBUG Processing 838/852 atomic regions from SNP 251359 to 251959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,424 DEBUG Processing 862/889 atomic regions from SNP 258581 to 259181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,527 DEBUG Processing 682/1129 atomic regions from SNP 204572 to 205172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,609 DEBUG Processing 738/1018 atomic regions from SNP 221280 to 221880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,659 DEBUG Processing 622/645 atomic regions from SNP 186599 to 187199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,677 DEBUG Processing 863/889 atomic regions from SNP 258881 to 259481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,701 DEBUG Processing 839/852 atomic regions from SNP 251659 to 252259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,820 DEBUG Processing 683/1129 atomic regions from SNP 204872 to 205472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,894 DEBUG Processing 739/1018 atomic regions from SNP 221580 to 222180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,924 DEBUG Processing 864/889 atomic regions from SNP 259181 to 259781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,931 DEBUG Processing 623/645 atomic regions from SNP 186899 to 187499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,967 DEBUG Processing 840/852 atomic regions from SNP 251959 to 252559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,111 DEBUG Processing 684/1129 atomic regions from SNP 205172 to 205772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,168 DEBUG Processing 865/889 atomic regions from SNP 259481 to 260081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,177 DEBUG Processing 740/1018 atomic regions from SNP 221880 to 222480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,201 DEBUG Processing 624/645 atomic regions from SNP 187199 to 187799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,262 DEBUG Processing 841/852 atomic regions from SNP 252259 to 252859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,399 DEBUG Processing 685/1129 atomic regions from SNP 205472 to 206072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,411 DEBUG Processing 866/889 atomic regions from SNP 259781 to 260381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,470 DEBUG Processing 741/1018 atomic regions from SNP 222180 to 222780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,472 DEBUG Processing 625/645 atomic regions from SNP 187499 to 188099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,549 DEBUG Processing 842/852 atomic regions from SNP 252559 to 253159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,650 DEBUG Processing 867/889 atomic regions from SNP 260081 to 260681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,703 DEBUG Processing 686/1129 atomic regions from SNP 205772 to 206372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,742 DEBUG Processing 626/645 atomic regions from SNP 187799 to 188399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,755 DEBUG Processing 742/1018 atomic regions from SNP 222480 to 223080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,820 DEBUG Processing 843/852 atomic regions from SNP 252859 to 253459 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,885 DEBUG Processing 868/889 atomic regions from SNP 260381 to 260981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,002 DEBUG Processing 687/1129 atomic regions from SNP 206072 to 206672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,006 DEBUG Processing 627/645 atomic regions from SNP 188099 to 188699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,035 DEBUG Processing 743/1018 atomic regions from SNP 222780 to 223380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,089 DEBUG Processing 844/852 atomic regions from SNP 253159 to 253759 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,129 DEBUG Processing 869/889 atomic regions from SNP 260681 to 261281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,269 DEBUG Processing 628/645 atomic regions from SNP 188399 to 188999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,301 DEBUG Processing 688/1129 atomic regions from SNP 206372 to 206972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,311 DEBUG Processing 744/1018 atomic regions from SNP 223080 to 223680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,378 DEBUG Processing 845/852 atomic regions from SNP 253459 to 254059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,387 DEBUG Processing 870/889 atomic regions from SNP 260981 to 261581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,542 DEBUG Processing 629/645 atomic regions from SNP 188699 to 189299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,590 DEBUG Processing 745/1018 atomic regions from SNP 223380 to 223980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,599 DEBUG Processing 689/1129 atomic regions from SNP 206672 to 207272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,641 DEBUG Processing 871/889 atomic regions from SNP 261281 to 261881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,665 DEBUG Processing 846/852 atomic regions from SNP 253759 to 254359 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,809 DEBUG Processing 630/645 atomic regions from SNP 188999 to 189599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,866 DEBUG Processing 746/1018 atomic regions from SNP 223680 to 224280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,894 DEBUG Processing 872/889 atomic regions from SNP 261581 to 262181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,895 DEBUG Processing 690/1129 atomic regions from SNP 206972 to 207572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,939 DEBUG Processing 847/852 atomic regions from SNP 254059 to 254659 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,061 DEBUG Processing 631/645 atomic regions from SNP 189299 to 189899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,144 DEBUG Processing 873/889 atomic regions from SNP 261881 to 262481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,161 DEBUG Processing 747/1018 atomic regions from SNP 223980 to 224580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,181 DEBUG Processing 691/1129 atomic regions from SNP 207272 to 207872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,196 DEBUG Processing 848/852 atomic regions from SNP 254359 to 254959 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,344 DEBUG Processing 632/645 atomic regions from SNP 189599 to 190199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,391 DEBUG Processing 874/889 atomic regions from SNP 262181 to 262781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,454 DEBUG Processing 849/852 atomic regions from SNP 254659 to 255259 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,461 DEBUG Processing 748/1018 atomic regions from SNP 224280 to 224880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,477 DEBUG Processing 692/1129 atomic regions from SNP 207572 to 208172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,632 DEBUG Processing 633/645 atomic regions from SNP 189899 to 190499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,632 DEBUG Processing 875/889 atomic regions from SNP 262481 to 263081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,719 DEBUG Processing 850/852 atomic regions from SNP 254959 to 255559 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,756 DEBUG Processing 749/1018 atomic regions from SNP 224580 to 225180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,774 DEBUG Processing 693/1129 atomic regions from SNP 207872 to 208472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,869 DEBUG Processing 876/889 atomic regions from SNP 262781 to 263381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,911 DEBUG Processing 634/645 atomic regions from SNP 190199 to 190799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,979 DEBUG Processing 851/852 atomic regions from SNP 255259 to 255859 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,057 DEBUG Processing 750/1018 atomic regions from SNP 224880 to 225480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,068 DEBUG Processing 694/1129 atomic regions from SNP 208172 to 208772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,107 DEBUG Processing 877/889 atomic regions from SNP 263081 to 263681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,175 DEBUG Processing 635/645 atomic regions from SNP 190499 to 191099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,248 DEBUG Processing 852/852 atomic regions from SNP 255559 to 256159 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,340 DEBUG Processing 751/1018 atomic regions from SNP 225180 to 225780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,361 DEBUG Processing 695/1129 atomic regions from SNP 208472 to 209072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,362 DEBUG Processing 878/889 atomic regions from SNP 263381 to 263981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,397 DEBUG Unique SNPs positions in subchromosome 1: 256160 2025-01-31 09:46:08,445 DEBUG Processing 636/645 atomic regions from SNP 190799 to 191399 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,614 DEBUG Processing 879/889 atomic regions from SNP 263681 to 264281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,638 DEBUG Processing 752/1018 atomic regions from SNP 225480 to 226080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,658 DEBUG Processing 696/1129 atomic regions from SNP 208772 to 209372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,711 DEBUG Processing 637/645 atomic regions from SNP 191099 to 191699 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,863 DEBUG Processing 880/889 atomic regions from SNP 263981 to 264581 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,951 DEBUG Processing 753/1018 atomic regions from SNP 225780 to 226380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,955 DEBUG Processing 697/1129 atomic regions from SNP 209072 to 209672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,005 DEBUG Processing 638/645 atomic regions from SNP 191399 to 191999 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,112 DEBUG Processing 881/889 atomic regions from SNP 264281 to 264881 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,238 DEBUG Processing 754/1018 atomic regions from SNP 226080 to 226680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,256 DEBUG Processing 698/1129 atomic regions from SNP 209372 to 209972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,306 DEBUG Processing 639/645 atomic regions from SNP 191699 to 192299 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,357 DEBUG Processing 882/889 atomic regions from SNP 264581 to 265181 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,517 DEBUG Processing 755/1018 atomic regions from SNP 226380 to 226980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,565 DEBUG Processing 699/1129 atomic regions from SNP 209672 to 210272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,594 DEBUG Processing 640/645 atomic regions from SNP 191999 to 192599 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,612 DEBUG Processing 883/889 atomic regions from SNP 264881 to 265481 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,621 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:46:09,785 DEBUG Processing 756/1018 atomic regions from SNP 226680 to 227280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,864 DEBUG Processing 884/889 atomic regions from SNP 265181 to 265781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,874 DEBUG Processing 641/645 atomic regions from SNP 192299 to 192899 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,874 DEBUG Processing 700/1129 atomic regions from SNP 209972 to 210572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,061 DEBUG Processing 757/1018 atomic regions from SNP 226980 to 227580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,125 DEBUG Processing 885/889 atomic regions from SNP 265481 to 266081 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,168 DEBUG Processing 642/645 atomic regions from SNP 192599 to 193199 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,176 DEBUG Processing 701/1129 atomic regions from SNP 210272 to 210872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,350 DEBUG Processing 758/1018 atomic regions from SNP 227280 to 227880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,383 DEBUG Processing 886/889 atomic regions from SNP 265781 to 266381 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,461 DEBUG Processing 643/645 atomic regions from SNP 192899 to 193499 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,474 DEBUG Processing 702/1129 atomic regions from SNP 210572 to 211172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,634 DEBUG Processing 759/1018 atomic regions from SNP 227580 to 228180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,636 DEBUG Processing 887/889 atomic regions from SNP 266081 to 266681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,763 DEBUG Processing 644/645 atomic regions from SNP 193199 to 193799 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,776 DEBUG Processing 703/1129 atomic regions from SNP 210872 to 211472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,882 DEBUG Processing 888/889 atomic regions from SNP 266381 to 266981 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,936 DEBUG Processing 760/1018 atomic regions from SNP 227880 to 228480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,055 DEBUG Processing 645/645 atomic regions from SNP 193499 to 194099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,080 DEBUG Processing 704/1129 atomic regions from SNP 211172 to 211772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,134 DEBUG Processing 889/889 atomic regions from SNP 266681 to 267281 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,208 DEBUG Processing 761/1018 atomic regions from SNP 228180 to 228780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,233 DEBUG Unique SNPs positions in subchromosome 2: 194100 2025-01-31 09:46:11,279 DEBUG Unique SNPs positions in subchromosome 1: 267282 2025-01-31 09:46:11,375 DEBUG Processing 705/1129 atomic regions from SNP 211472 to 212072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,487 DEBUG Processing 762/1018 atomic regions from SNP 228480 to 229080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,673 DEBUG Processing 706/1129 atomic regions from SNP 211772 to 212372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,753 DEBUG Processing 763/1018 atomic regions from SNP 228780 to 229380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,963 DEBUG Processing 707/1129 atomic regions from SNP 212072 to 212672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,017 DEBUG Processing 764/1018 atomic regions from SNP 229080 to 229680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,243 DEBUG Processing 708/1129 atomic regions from SNP 212372 to 212972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,280 DEBUG Processing 765/1018 atomic regions from SNP 229380 to 229980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,544 DEBUG Processing 766/1018 atomic regions from SNP 229680 to 230280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,546 DEBUG Processing 709/1129 atomic regions from SNP 212672 to 213272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,810 DEBUG Processing 767/1018 atomic regions from SNP 229980 to 230580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,859 DEBUG Processing 710/1129 atomic regions from SNP 212972 to 213572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,080 DEBUG Processing 768/1018 atomic regions from SNP 230280 to 230880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,153 DEBUG Processing 711/1129 atomic regions from SNP 213272 to 213872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,358 DEBUG Processing 769/1018 atomic regions from SNP 230580 to 231180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,445 DEBUG Processing 712/1129 atomic regions from SNP 213572 to 214172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,629 DEBUG Processing 770/1018 atomic regions from SNP 230880 to 231480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,724 DEBUG Processing 713/1129 atomic regions from SNP 213872 to 214472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,895 DEBUG Processing 771/1018 atomic regions from SNP 231180 to 231780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,007 DEBUG Processing 714/1129 atomic regions from SNP 214172 to 214772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,163 DEBUG Processing 772/1018 atomic regions from SNP 231480 to 232080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,295 DEBUG Processing 715/1129 atomic regions from SNP 214472 to 215072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,435 DEBUG Processing 773/1018 atomic regions from SNP 231780 to 232380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,582 DEBUG Processing 716/1129 atomic regions from SNP 214772 to 215372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,703 DEBUG Processing 774/1018 atomic regions from SNP 232080 to 232680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,884 DEBUG Processing 717/1129 atomic regions from SNP 215072 to 215672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,966 DEBUG Processing 775/1018 atomic regions from SNP 232380 to 232980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,182 DEBUG Processing 718/1129 atomic regions from SNP 215372 to 215972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,231 DEBUG Processing 776/1018 atomic regions from SNP 232680 to 233280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,473 DEBUG Processing 719/1129 atomic regions from SNP 215672 to 216272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,499 DEBUG Processing 777/1018 atomic regions from SNP 232980 to 233580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,762 DEBUG Processing 720/1129 atomic regions from SNP 215972 to 216572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,768 DEBUG Processing 778/1018 atomic regions from SNP 233280 to 233880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,037 DEBUG Processing 779/1018 atomic regions from SNP 233580 to 234180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,060 DEBUG Processing 721/1129 atomic regions from SNP 216272 to 216872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,305 DEBUG Processing 780/1018 atomic regions from SNP 233880 to 234480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,352 DEBUG Processing 722/1129 atomic regions from SNP 216572 to 217172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,575 DEBUG Processing 781/1018 atomic regions from SNP 234180 to 234780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,650 DEBUG Processing 723/1129 atomic regions from SNP 216872 to 217472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,845 DEBUG Processing 782/1018 atomic regions from SNP 234480 to 235080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,966 DEBUG Processing 724/1129 atomic regions from SNP 217172 to 217772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,115 DEBUG Processing 783/1018 atomic regions from SNP 234780 to 235380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,273 DEBUG Processing 725/1129 atomic regions from SNP 217472 to 218072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,389 DEBUG Processing 784/1018 atomic regions from SNP 235080 to 235680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,661 DEBUG Processing 726/1129 atomic regions from SNP 217772 to 218372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,764 DEBUG Processing 785/1018 atomic regions from SNP 235380 to 235980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,109 DEBUG Processing 727/1129 atomic regions from SNP 218072 to 218672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,133 DEBUG Processing 786/1018 atomic regions from SNP 235680 to 236280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,488 DEBUG Processing 787/1018 atomic regions from SNP 235980 to 236580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,526 DEBUG Processing 728/1129 atomic regions from SNP 218372 to 218972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,787 DEBUG Processing 788/1018 atomic regions from SNP 236280 to 236880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,827 DEBUG Processing 729/1129 atomic regions from SNP 218672 to 219272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,067 DEBUG Processing 789/1018 atomic regions from SNP 236580 to 237180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,133 DEBUG Processing 730/1129 atomic regions from SNP 218972 to 219572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,336 DEBUG Processing 790/1018 atomic regions from SNP 236880 to 237480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,415 DEBUG Processing 731/1129 atomic regions from SNP 219272 to 219872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,609 DEBUG Processing 791/1018 atomic regions from SNP 237180 to 237780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,702 DEBUG Processing 732/1129 atomic regions from SNP 219572 to 220172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,881 DEBUG Processing 792/1018 atomic regions from SNP 237480 to 238080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,995 DEBUG Processing 733/1129 atomic regions from SNP 219872 to 220472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,158 DEBUG Processing 793/1018 atomic regions from SNP 237780 to 238380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,308 DEBUG Processing 734/1129 atomic regions from SNP 220172 to 220772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,420 DEBUG Processing 794/1018 atomic regions from SNP 238080 to 238680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,609 DEBUG Processing 735/1129 atomic regions from SNP 220472 to 221072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,679 DEBUG Processing 795/1018 atomic regions from SNP 238380 to 238980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,904 DEBUG Processing 736/1129 atomic regions from SNP 220772 to 221372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,939 DEBUG Processing 796/1018 atomic regions from SNP 238680 to 239280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,194 DEBUG Processing 737/1129 atomic regions from SNP 221072 to 221672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,205 DEBUG Processing 797/1018 atomic regions from SNP 238980 to 239580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,464 DEBUG Processing 798/1018 atomic regions from SNP 239280 to 239880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,484 DEBUG Processing 738/1129 atomic regions from SNP 221372 to 221972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,721 DEBUG Processing 799/1018 atomic regions from SNP 239580 to 240180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,767 DEBUG Processing 739/1129 atomic regions from SNP 221672 to 222272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,985 DEBUG Processing 800/1018 atomic regions from SNP 239880 to 240480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,047 DEBUG Processing 740/1129 atomic regions from SNP 221972 to 222572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,248 DEBUG Processing 801/1018 atomic regions from SNP 240180 to 240780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,329 DEBUG Processing 741/1129 atomic regions from SNP 222272 to 222872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,506 DEBUG Processing 802/1018 atomic regions from SNP 240480 to 241080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,635 DEBUG Processing 742/1129 atomic regions from SNP 222572 to 223172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,766 DEBUG Processing 803/1018 atomic regions from SNP 240780 to 241380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,920 DEBUG Processing 743/1129 atomic regions from SNP 222872 to 223472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,035 DEBUG Processing 804/1018 atomic regions from SNP 241080 to 241680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,227 DEBUG Processing 744/1129 atomic regions from SNP 223172 to 223772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,303 DEBUG Processing 805/1018 atomic regions from SNP 241380 to 241980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,549 DEBUG Processing 745/1129 atomic regions from SNP 223472 to 224072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,569 DEBUG Processing 806/1018 atomic regions from SNP 241680 to 242280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,839 DEBUG Processing 807/1018 atomic regions from SNP 241980 to 242580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,860 DEBUG Processing 746/1129 atomic regions from SNP 223772 to 224372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,107 DEBUG Processing 808/1018 atomic regions from SNP 242280 to 242880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,173 DEBUG Processing 747/1129 atomic regions from SNP 224072 to 224672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,368 DEBUG Processing 809/1018 atomic regions from SNP 242580 to 243180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,475 DEBUG Processing 748/1129 atomic regions from SNP 224372 to 224972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,629 DEBUG Processing 810/1018 atomic regions from SNP 242880 to 243480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,785 DEBUG Processing 749/1129 atomic regions from SNP 224672 to 225272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,890 DEBUG Processing 811/1018 atomic regions from SNP 243180 to 243780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,093 DEBUG Processing 750/1129 atomic regions from SNP 224972 to 225572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,160 DEBUG Processing 812/1018 atomic regions from SNP 243480 to 244080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,411 DEBUG Processing 751/1129 atomic regions from SNP 225272 to 225872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,430 DEBUG Processing 813/1018 atomic regions from SNP 243780 to 244380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,694 DEBUG Processing 814/1018 atomic regions from SNP 244080 to 244680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,728 DEBUG Processing 752/1129 atomic regions from SNP 225572 to 226172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,959 DEBUG Processing 815/1018 atomic regions from SNP 244380 to 244980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,044 DEBUG Processing 753/1129 atomic regions from SNP 225872 to 226472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,223 DEBUG Processing 816/1018 atomic regions from SNP 244680 to 245280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,358 DEBUG Processing 754/1129 atomic regions from SNP 226172 to 226772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,487 DEBUG Processing 817/1018 atomic regions from SNP 244980 to 245580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,651 DEBUG Processing 755/1129 atomic regions from SNP 226472 to 227072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,763 DEBUG Processing 818/1018 atomic regions from SNP 245280 to 245880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,985 DEBUG Processing 756/1129 atomic regions from SNP 226772 to 227372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,058 DEBUG Processing 819/1018 atomic regions from SNP 245580 to 246180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,391 DEBUG Processing 757/1129 atomic regions from SNP 227072 to 227672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,493 DEBUG Processing 820/1018 atomic regions from SNP 245880 to 246480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,883 DEBUG Processing 758/1129 atomic regions from SNP 227372 to 227972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,926 DEBUG Processing 821/1018 atomic regions from SNP 246180 to 246780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,391 DEBUG Processing 822/1018 atomic regions from SNP 246480 to 247080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,397 DEBUG Processing 759/1129 atomic regions from SNP 227672 to 228272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,756 DEBUG Processing 823/1018 atomic regions from SNP 246780 to 247380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,763 DEBUG Processing 760/1129 atomic regions from SNP 227972 to 228572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,957 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:46:28,959 DEBUG chr6: Signal quantile: 0.993. signal threshold: 17. Best RMSEA: 0.017 2025-01-31 09:46:29,134 DEBUG Processing 824/1018 atomic regions from SNP 247080 to 247680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,188 DEBUG Processing 761/1129 atomic regions from SNP 228272 to 228872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,420 DEBUG Processing 825/1018 atomic regions from SNP 247380 to 247980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,525 DEBUG Processing 762/1129 atomic regions from SNP 228572 to 229172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,762 DEBUG Processing 826/1018 atomic regions from SNP 247680 to 248280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,968 DEBUG Processing 763/1129 atomic regions from SNP 228872 to 229472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,093 DEBUG Processing 827/1018 atomic regions from SNP 247980 to 248580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,370 DEBUG Processing 764/1129 atomic regions from SNP 229172 to 229772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,416 DEBUG Processing 828/1018 atomic regions from SNP 248280 to 248880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,783 DEBUG Subchromosome time: 215.77801037498284, subchromosome SNPs: 194100 2025-01-31 09:46:30,784 DEBUG Estimated BADs: [1.29, 2.57, 0.86, 7.72, 1.29, 0.37, 7.72, 7.72, 2.57, 0.43, 1.29, 2.57, 0.43, 0.86, 0.29, 1.29, 2.57, 0.37, 1.29, 0.51, 2.57, 5.15, 0.43, 1.29, 25.74, 1.29, 7.72, 0.86, 5.15, 2.57, 7.72, 2.57, 7.72] SNP counts: [9034, 13125, 27576, 1027, 6423, 4967, 3054, 8902, 3858, 3578, 7541, 11128, 9330, 11454, 6918, 10272, 5064, 5408, 4233, 3743, 16420, 6856, 5334, 1954, 126, 1056, 10424, 1224, 7836, 2951, 24887, 7486, 16117] SNP IDs counts: [9034, 13125, 27576, 1027, 6423, 4967, 3054, 8902, 3858, 3578, 7541, 11128, 9330, 11454, 6918, 10272, 5064, 5408, 4233, 3743, 16420, 6856, 5334, 1954, 126, 1056, 10424, 1224, 7836, 2951, 24887, 7486, 16117] Critical gap: 687832bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 8.64Mbp, 16.17Mbp, 32.76Mbp, 33.31Mbp, 37.03Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 47.52Mbp, 49.69Mbp, 51.88Mbp, 56.12Mbp, 63.91Mbp, 69.50Mbp, 76.63Mbp, 80.88Mbp, 86.65Mbp, 89.58Mbp, 92.96Mbp, 95.39Mbp, 97.57Mbp, 106.56Mbp, 110.25Mbp, 113.85Mbp, 115.04Mbp, 115.10Mbp, 115.82Mbp, 121.42Mbp, 122.88Mbp, 127.02Mbp, 128.58Mbp, 141.74Mbp, 147.86Mbp, 156.51Mbp] 2025-01-31 09:46:30,784 DEBUG chr4 time: 215.778595263022 s 2025-01-31 09:46:30,840 DEBUG Processing 829/1018 atomic regions from SNP 248580 to 249180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,852 DEBUG Processing 765/1129 atomic regions from SNP 229472 to 230072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,966 DEBUG chr4: Fitting background model for 33 segments 2025-01-31 09:46:31,170 DEBUG Processing 830/1018 atomic regions from SNP 248880 to 249480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,218 DEBUG Processing 766/1129 atomic regions from SNP 229772 to 230372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,518 DEBUG Processing 831/1018 atomic regions from SNP 249180 to 249780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,604 DEBUG Processing 767/1129 atomic regions from SNP 230072 to 230672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,802 DEBUG Processing 832/1018 atomic regions from SNP 249480 to 250080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,917 DEBUG Processing 768/1129 atomic regions from SNP 230372 to 230972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,059 DEBUG Processing 833/1018 atomic regions from SNP 249780 to 250380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,209 DEBUG Processing 769/1129 atomic regions from SNP 230672 to 231272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,330 DEBUG Processing 834/1018 atomic regions from SNP 250080 to 250680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,402 DEBUG chr6 total SNP count: 255460 2025-01-31 09:46:32,403 DEBUG chr6 length: 149736546 2025-01-31 09:46:32,403 DEBUG ----------------------------------------- 2025-01-31 09:46:32,403 INFO Processing SNPs in chr6 2025-01-31 09:46:32,531 DEBUG Processing 770/1129 atomic regions from SNP 230972 to 231572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,606 DEBUG Processing 835/1018 atomic regions from SNP 250380 to 250980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,658 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 255460)] 2025-01-31 09:46:32,830 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:46:32,851 DEBUG Processing 771/1129 atomic regions from SNP 231272 to 231872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,876 DEBUG Processing 836/1018 atomic regions from SNP 250680 to 251280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,151 DEBUG Processing 837/1018 atomic regions from SNP 250980 to 251580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,158 DEBUG Processing 772/1129 atomic regions from SNP 231572 to 232172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,423 DEBUG Processing 838/1018 atomic regions from SNP 251280 to 251880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,468 DEBUG Processing 773/1129 atomic regions from SNP 231872 to 232472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,686 DEBUG Processing 839/1018 atomic regions from SNP 251580 to 252180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,774 DEBUG Processing 774/1129 atomic regions from SNP 232172 to 232772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,949 DEBUG Processing 840/1018 atomic regions from SNP 251880 to 252480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,089 DEBUG Processing 775/1129 atomic regions from SNP 232472 to 233072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,208 DEBUG Processing 841/1018 atomic regions from SNP 252180 to 252780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,405 DEBUG Processing 776/1129 atomic regions from SNP 232772 to 233372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,466 DEBUG Processing 842/1018 atomic regions from SNP 252480 to 253080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,705 DEBUG Processing 777/1129 atomic regions from SNP 233072 to 233672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,726 DEBUG Processing 843/1018 atomic regions from SNP 252780 to 253380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,988 DEBUG Processing 844/1018 atomic regions from SNP 253080 to 253680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,009 DEBUG Processing 778/1129 atomic regions from SNP 233372 to 233972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,253 DEBUG Processing 845/1018 atomic regions from SNP 253380 to 253980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,303 DEBUG Processing 779/1129 atomic regions from SNP 233672 to 234272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,524 DEBUG Processing 846/1018 atomic regions from SNP 253680 to 254280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,589 DEBUG Processing 780/1129 atomic regions from SNP 233972 to 234572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,794 DEBUG Processing 847/1018 atomic regions from SNP 253980 to 254580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,856 DEBUG Processing 781/1129 atomic regions from SNP 234272 to 234872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,062 DEBUG Processing 848/1018 atomic regions from SNP 254280 to 254880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,126 DEBUG Processing 782/1129 atomic regions from SNP 234572 to 235172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,335 DEBUG Processing 849/1018 atomic regions from SNP 254580 to 255180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,411 DEBUG Processing 783/1129 atomic regions from SNP 234872 to 235472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,423 DEBUG Subchromosome time: 282.79621139599476, subchromosome SNPs: 267282 2025-01-31 09:46:36,423 DEBUG Estimated BADs: [0.60, 4.82, 1.20, 4.82, 1.20, 2.41, 0.80, 4.82, 0.60, 16.85, 2.41, 0.48, 1.20, 4.82, 1.20, 7.22, 19.26, 1.20, 21.67, 4.82, 7.22, 0.80, 4.82, 1.20, 4.82, 0.80, 4.82, 2.41, 12.04, 2.41, 0.27, 1.20, 2.41, 0.34, 2.41, 0.30, 2.41, 0.24] SNP counts: [9141, 2797, 14129, 1598, 11566, 19836, 4414, 1396, 12883, 1505, 33897, 6305, 7527, 1482, 6466, 6917, 5218, 5597, 4306, 6231, 17462, 8711, 4178, 5117, 6574, 2723, 15003, 2800, 1083, 5732, 4163, 3316, 5404, 7781, 6344, 3285, 1781, 2614] SNP IDs counts: [9141, 2797, 14129, 1598, 11566, 19836, 4414, 1396, 12883, 1505, 33897, 6305, 7527, 1482, 6466, 6917, 5218, 5597, 4306, 6231, 17462, 8711, 4178, 5117, 6574, 2723, 15003, 2800, 1083, 5732, 4163, 3316, 5404, 7781, 6344, 3285, 1781, 2614] Critical gap: 697421bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.66Mbp, 10.23Mbp, 19.15Mbp, 20.03Mbp, 27.06Mbp, 38.14Mbp, 40.95Mbp, 41.69Mbp, 50.90Mbp, 51.70Mbp, 71.16Mbp, 75.06Mbp, 79.51Mbp, 80.34Mbp, 84.01Mbp, 87.71Mbp, 90.51Mbp, 94.33Mbp, 96.73Mbp, 100.36Mbp, 109.79Mbp, 115.23Mbp, 117.54Mbp, 120.39Mbp, 123.95Mbp, 125.49Mbp, 133.76Mbp, 135.40Mbp, 135.98Mbp, 139.19Mbp, 142.01Mbp, 143.84Mbp, 146.82Mbp, 151.61Mbp, 155.10Mbp, 157.11Mbp, 158.12Mbp, 160.04Mbp] 2025-01-31 09:46:36,423 DEBUG chr3 time: 282.79696837696247 s 2025-01-31 09:46:36,575 DEBUG chr3: Fitting background model for 38 segments 2025-01-31 09:46:36,610 DEBUG Processing 850/1018 atomic regions from SNP 254880 to 255480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,687 DEBUG Processing 784/1129 atomic regions from SNP 235172 to 235772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,878 DEBUG Processing 851/1018 atomic regions from SNP 255180 to 255780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,970 DEBUG Processing 785/1129 atomic regions from SNP 235472 to 236072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,147 DEBUG Processing 852/1018 atomic regions from SNP 255480 to 256080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,243 DEBUG Processing 786/1129 atomic regions from SNP 235772 to 236372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,413 DEBUG Processing 853/1018 atomic regions from SNP 255780 to 256380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,507 DEBUG Processing 787/1129 atomic regions from SNP 236072 to 236672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,680 DEBUG Processing 854/1018 atomic regions from SNP 256080 to 256680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,774 DEBUG Processing 788/1129 atomic regions from SNP 236372 to 236972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,945 DEBUG Processing 855/1018 atomic regions from SNP 256380 to 256980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,040 DEBUG Processing 789/1129 atomic regions from SNP 236672 to 237272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,209 DEBUG Processing 856/1018 atomic regions from SNP 256680 to 257280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,311 DEBUG Processing 790/1129 atomic regions from SNP 236972 to 237572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,466 DEBUG Processing 857/1018 atomic regions from SNP 256980 to 257580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,588 DEBUG Processing 791/1129 atomic regions from SNP 237272 to 237872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,718 DEBUG Processing 858/1018 atomic regions from SNP 257280 to 257880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,866 DEBUG Processing 792/1129 atomic regions from SNP 237572 to 238172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,972 DEBUG Processing 859/1018 atomic regions from SNP 257580 to 258180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,988 DEBUG Subchromosome time: 282.4193625439657, subchromosome SNPs: 256160 2025-01-31 09:46:38,989 DEBUG Estimated BADs: [2.35, 0.59, 14.11, 2.35, 7.06, 2.35, 9.41, 4.70, 0.34, 1.18, 0.59, 2.35, 0.34, 2.35, 0.39, 2.35, 0.34, 0.78, 2.35, 0.78, 2.35, 9.41, 2.35, 4.70, 9.41, 4.70, 9.41, 2.35, 14.11, 1.18, 7.06, 4.70] SNP counts: [4902, 22424, 161, 4293, 3879, 8084, 1915, 14331, 3611, 8116, 9025, 5724, 14678, 9293, 5402, 11121, 9266, 7502, 12913, 4369, 6136, 921, 10816, 6879, 3598, 8550, 10052, 7890, 507, 7684, 18119, 13999] SNP IDs counts: [4902, 22424, 161, 4293, 3879, 8084, 1915, 14331, 3611, 8116, 9025, 5724, 14678, 9293, 5402, 11121, 9266, 7502, 12913, 4369, 6136, 921, 10816, 6879, 3598, 8550, 10052, 7890, 507, 7684, 18119, 13999] Critical gap: 675114bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.88Mbp, 20.88Mbp, 20.96Mbp, 23.40Mbp, 25.49Mbp, 30.19Mbp, 31.24Mbp, 38.98Mbp, 41.13Mbp, 45.88Mbp, 51.18Mbp, 54.23Mbp, 63.43Mbp, 68.52Mbp, 71.85Mbp, 77.90Mbp, 83.59Mbp, 88.06Mbp, 97.56Mbp, 99.97Mbp, 103.35Mbp, 103.83Mbp, 110.09Mbp, 113.73Mbp, 115.61Mbp, 120.09Mbp, 125.45Mbp, 129.71Mbp, 130.03Mbp, 134.17Mbp, 143.98Mbp, 151.83Mbp] 2025-01-31 09:46:38,989 DEBUG chr5 time: 282.42001840507146 s 2025-01-31 09:46:39,138 DEBUG chr5: Fitting background model for 32 segments 2025-01-31 09:46:39,150 DEBUG Processing 793/1129 atomic regions from SNP 237872 to 238472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,243 DEBUG Processing 860/1018 atomic regions from SNP 257880 to 258480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,442 DEBUG Processing 794/1129 atomic regions from SNP 238172 to 238772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,511 DEBUG Processing 861/1018 atomic regions from SNP 258180 to 258780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,738 DEBUG Processing 795/1129 atomic regions from SNP 238472 to 239072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,784 DEBUG Processing 862/1018 atomic regions from SNP 258480 to 259080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,034 DEBUG Processing 796/1129 atomic regions from SNP 238772 to 239372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,063 DEBUG Processing 863/1018 atomic regions from SNP 258780 to 259380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,335 DEBUG Processing 797/1129 atomic regions from SNP 239072 to 239672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,351 DEBUG Processing 864/1018 atomic regions from SNP 259080 to 259680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,622 DEBUG Processing 798/1129 atomic regions from SNP 239372 to 239972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,627 DEBUG Processing 865/1018 atomic regions from SNP 259380 to 259980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,899 DEBUG Processing 866/1018 atomic regions from SNP 259680 to 260280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,922 DEBUG Processing 799/1129 atomic regions from SNP 239672 to 240272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,181 DEBUG Processing 867/1018 atomic regions from SNP 259980 to 260580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,212 DEBUG Processing 800/1129 atomic regions from SNP 239972 to 240572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,450 DEBUG Processing 868/1018 atomic regions from SNP 260280 to 260880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,498 DEBUG Processing 801/1129 atomic regions from SNP 240272 to 240872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,727 DEBUG Processing 869/1018 atomic regions from SNP 260580 to 261180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,786 DEBUG Processing 802/1129 atomic regions from SNP 240572 to 241172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,006 DEBUG Processing 870/1018 atomic regions from SNP 260880 to 261480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,082 DEBUG Processing 803/1129 atomic regions from SNP 240872 to 241472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,302 DEBUG Processing 871/1018 atomic regions from SNP 261180 to 261780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,376 DEBUG Processing 804/1129 atomic regions from SNP 241172 to 241772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,577 DEBUG Processing 872/1018 atomic regions from SNP 261480 to 262080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,669 DEBUG Processing 805/1129 atomic regions from SNP 241472 to 242072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,859 DEBUG Processing 873/1018 atomic regions from SNP 261780 to 262380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,974 DEBUG Processing 806/1129 atomic regions from SNP 241772 to 242372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,135 DEBUG Processing 874/1018 atomic regions from SNP 262080 to 262680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,276 DEBUG Processing 807/1129 atomic regions from SNP 242072 to 242672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,420 DEBUG Processing 875/1018 atomic regions from SNP 262380 to 262980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,569 DEBUG Processing 808/1129 atomic regions from SNP 242372 to 242972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,718 DEBUG Processing 876/1018 atomic regions from SNP 262680 to 263280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,860 DEBUG Processing 809/1129 atomic regions from SNP 242672 to 243272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,009 DEBUG Processing 877/1018 atomic regions from SNP 262980 to 263580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,155 DEBUG Processing 810/1129 atomic regions from SNP 242972 to 243572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,306 DEBUG Processing 878/1018 atomic regions from SNP 263280 to 263880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,437 DEBUG Processing 811/1129 atomic regions from SNP 243272 to 243872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,597 DEBUG Processing 879/1018 atomic regions from SNP 263580 to 264180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,725 DEBUG Processing 812/1129 atomic regions from SNP 243572 to 244172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,876 DEBUG Processing 880/1018 atomic regions from SNP 263880 to 264480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,014 DEBUG Processing 813/1129 atomic regions from SNP 243872 to 244472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,166 DEBUG Processing 881/1018 atomic regions from SNP 264180 to 264780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,294 DEBUG Processing 814/1129 atomic regions from SNP 244172 to 244772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,459 DEBUG Processing 882/1018 atomic regions from SNP 264480 to 265080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,572 DEBUG Processing 815/1129 atomic regions from SNP 244472 to 245072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,744 DEBUG Processing 883/1018 atomic regions from SNP 264780 to 265380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,857 DEBUG Processing 816/1129 atomic regions from SNP 244772 to 245372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,038 DEBUG Processing 884/1018 atomic regions from SNP 265080 to 265680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,142 DEBUG Processing 817/1129 atomic regions from SNP 245072 to 245672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,330 DEBUG Processing 885/1018 atomic regions from SNP 265380 to 265980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,427 DEBUG Processing 818/1129 atomic regions from SNP 245372 to 245972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,625 DEBUG Processing 886/1018 atomic regions from SNP 265680 to 266280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,720 DEBUG Processing 819/1129 atomic regions from SNP 245672 to 246272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,920 DEBUG Processing 887/1018 atomic regions from SNP 265980 to 266580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,026 DEBUG Processing 820/1129 atomic regions from SNP 245972 to 246572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,202 DEBUG Processing 888/1018 atomic regions from SNP 266280 to 266880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,309 DEBUG Processing 821/1129 atomic regions from SNP 246272 to 246872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,472 DEBUG Processing 889/1018 atomic regions from SNP 266580 to 267180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,587 DEBUG Processing 822/1129 atomic regions from SNP 246572 to 247172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,741 DEBUG Processing 890/1018 atomic regions from SNP 266880 to 267480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,860 DEBUG Processing 823/1129 atomic regions from SNP 246872 to 247472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,031 DEBUG Processing 891/1018 atomic regions from SNP 267180 to 267780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,138 DEBUG Processing 824/1129 atomic regions from SNP 247172 to 247772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,328 DEBUG Processing 892/1018 atomic regions from SNP 267480 to 268080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,418 DEBUG Processing 825/1129 atomic regions from SNP 247472 to 248072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,619 DEBUG Processing 893/1018 atomic regions from SNP 267780 to 268380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,699 DEBUG Processing 826/1129 atomic regions from SNP 247772 to 248372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,895 DEBUG Processing 894/1018 atomic regions from SNP 268080 to 268680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,983 DEBUG Processing 827/1129 atomic regions from SNP 248072 to 248672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,194 DEBUG Processing 895/1018 atomic regions from SNP 268380 to 268980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,267 DEBUG Processing 828/1129 atomic regions from SNP 248372 to 248972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,474 DEBUG Processing 896/1018 atomic regions from SNP 268680 to 269280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,557 DEBUG Processing 829/1129 atomic regions from SNP 248672 to 249272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,748 DEBUG Processing 897/1018 atomic regions from SNP 268980 to 269580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,841 DEBUG Processing 830/1129 atomic regions from SNP 248972 to 249572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,033 DEBUG Processing 898/1018 atomic regions from SNP 269280 to 269880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,117 DEBUG Processing 831/1129 atomic regions from SNP 249272 to 249872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,325 DEBUG Processing 899/1018 atomic regions from SNP 269580 to 270180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,401 DEBUG Processing 832/1129 atomic regions from SNP 249572 to 250172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,619 DEBUG Processing 900/1018 atomic regions from SNP 269880 to 270480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,689 DEBUG Processing 833/1129 atomic regions from SNP 249872 to 250472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,910 DEBUG Processing 901/1018 atomic regions from SNP 270180 to 270780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,991 DEBUG Processing 834/1129 atomic regions from SNP 250172 to 250772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,208 DEBUG Processing 902/1018 atomic regions from SNP 270480 to 271080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,286 DEBUG Processing 835/1129 atomic regions from SNP 250472 to 251072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,490 DEBUG Processing 903/1018 atomic regions from SNP 270780 to 271380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,582 DEBUG Processing 836/1129 atomic regions from SNP 250772 to 251372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,780 DEBUG Processing 904/1018 atomic regions from SNP 271080 to 271680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,872 DEBUG Processing 837/1129 atomic regions from SNP 251072 to 251672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,074 DEBUG Processing 905/1018 atomic regions from SNP 271380 to 271980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,168 DEBUG Processing 838/1129 atomic regions from SNP 251372 to 251972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,377 DEBUG Processing 906/1018 atomic regions from SNP 271680 to 272280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,467 DEBUG Processing 839/1129 atomic regions from SNP 251672 to 252272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,685 DEBUG Processing 907/1018 atomic regions from SNP 271980 to 272580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,763 DEBUG Processing 840/1129 atomic regions from SNP 251972 to 252572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,986 DEBUG Processing 908/1018 atomic regions from SNP 272280 to 272880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,056 DEBUG Processing 841/1129 atomic regions from SNP 252272 to 252872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,278 DEBUG Processing 909/1018 atomic regions from SNP 272580 to 273180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,345 DEBUG Processing 842/1129 atomic regions from SNP 252572 to 253172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,574 DEBUG Processing 910/1018 atomic regions from SNP 272880 to 273480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,640 DEBUG Processing 843/1129 atomic regions from SNP 252872 to 253472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,874 DEBUG Processing 911/1018 atomic regions from SNP 273180 to 273780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,919 DEBUG Processing 844/1129 atomic regions from SNP 253172 to 253772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,156 DEBUG Processing 912/1018 atomic regions from SNP 273480 to 274080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,200 DEBUG Processing 845/1129 atomic regions from SNP 253472 to 254072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,442 DEBUG Processing 913/1018 atomic regions from SNP 273780 to 274380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,481 DEBUG Processing 846/1129 atomic regions from SNP 253772 to 254372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,717 DEBUG Processing 914/1018 atomic regions from SNP 274080 to 274680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,769 DEBUG Processing 847/1129 atomic regions from SNP 254072 to 254672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,000 DEBUG Processing 915/1018 atomic regions from SNP 274380 to 274980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,053 DEBUG Processing 848/1129 atomic regions from SNP 254372 to 254972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,283 DEBUG Processing 916/1018 atomic regions from SNP 274680 to 275280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,337 DEBUG Processing 849/1129 atomic regions from SNP 254672 to 255272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,561 DEBUG Processing 917/1018 atomic regions from SNP 274980 to 275580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,622 DEBUG Processing 850/1129 atomic regions from SNP 254972 to 255572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,849 DEBUG Processing 918/1018 atomic regions from SNP 275280 to 275880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,911 DEBUG Processing 851/1129 atomic regions from SNP 255272 to 255872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,126 DEBUG Processing 919/1018 atomic regions from SNP 275580 to 276180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,192 DEBUG Processing 852/1129 atomic regions from SNP 255572 to 256172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,387 DEBUG Processing 920/1018 atomic regions from SNP 275880 to 276480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,472 DEBUG Processing 853/1129 atomic regions from SNP 255872 to 256472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,647 DEBUG Processing 921/1018 atomic regions from SNP 276180 to 276780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,761 DEBUG Processing 854/1129 atomic regions from SNP 256172 to 256772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,908 DEBUG Processing 922/1018 atomic regions from SNP 276480 to 277080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,055 DEBUG Processing 855/1129 atomic regions from SNP 256472 to 257072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,171 DEBUG Processing 923/1018 atomic regions from SNP 276780 to 277380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,348 DEBUG Processing 856/1129 atomic regions from SNP 256772 to 257372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,445 DEBUG Processing 924/1018 atomic regions from SNP 277080 to 277680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,630 DEBUG Processing 857/1129 atomic regions from SNP 257072 to 257672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,725 DEBUG Processing 925/1018 atomic regions from SNP 277380 to 277980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,913 DEBUG Processing 858/1129 atomic regions from SNP 257372 to 257972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,006 DEBUG Processing 926/1018 atomic regions from SNP 277680 to 278280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,200 DEBUG Processing 859/1129 atomic regions from SNP 257672 to 258272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,279 DEBUG Processing 927/1018 atomic regions from SNP 277980 to 278580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,509 DEBUG Processing 860/1129 atomic regions from SNP 257972 to 258572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,559 DEBUG Processing 928/1018 atomic regions from SNP 278280 to 278880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,819 DEBUG Processing 861/1129 atomic regions from SNP 258272 to 258872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,838 DEBUG Processing 929/1018 atomic regions from SNP 278580 to 279180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,110 DEBUG Processing 930/1018 atomic regions from SNP 278880 to 279480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,121 DEBUG Processing 862/1129 atomic regions from SNP 258572 to 259172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,395 DEBUG Processing 931/1018 atomic regions from SNP 279180 to 279780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,414 DEBUG Processing 863/1129 atomic regions from SNP 258872 to 259472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,698 DEBUG Processing 932/1018 atomic regions from SNP 279480 to 280080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,739 DEBUG Processing 864/1129 atomic regions from SNP 259172 to 259772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,981 DEBUG Processing 933/1018 atomic regions from SNP 279780 to 280380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,056 DEBUG Processing 865/1129 atomic regions from SNP 259472 to 260072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,248 DEBUG Processing 934/1018 atomic regions from SNP 280080 to 280680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,362 DEBUG Processing 866/1129 atomic regions from SNP 259772 to 260372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,512 DEBUG Processing 935/1018 atomic regions from SNP 280380 to 280980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,651 DEBUG Processing 867/1129 atomic regions from SNP 260072 to 260672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,784 DEBUG Processing 936/1018 atomic regions from SNP 280680 to 281280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,957 DEBUG Processing 868/1129 atomic regions from SNP 260372 to 260972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,056 DEBUG Processing 937/1018 atomic regions from SNP 280980 to 281580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,274 DEBUG Processing 869/1129 atomic regions from SNP 260672 to 261272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,322 DEBUG Processing 938/1018 atomic regions from SNP 281280 to 281880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,582 DEBUG Processing 870/1129 atomic regions from SNP 260972 to 261572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,593 DEBUG Processing 939/1018 atomic regions from SNP 281580 to 282180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,867 DEBUG Processing 940/1018 atomic regions from SNP 281880 to 282480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,882 DEBUG Processing 871/1129 atomic regions from SNP 261272 to 261872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,140 DEBUG Processing 941/1018 atomic regions from SNP 282180 to 282780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,190 DEBUG Processing 872/1129 atomic regions from SNP 261572 to 262172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,420 DEBUG Processing 942/1018 atomic regions from SNP 282480 to 283080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,498 DEBUG Processing 873/1129 atomic regions from SNP 261872 to 262472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,698 DEBUG Processing 943/1018 atomic regions from SNP 282780 to 283380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,816 DEBUG Processing 874/1129 atomic regions from SNP 262172 to 262772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,979 DEBUG Processing 944/1018 atomic regions from SNP 283080 to 283680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,132 DEBUG Processing 875/1129 atomic regions from SNP 262472 to 263072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,255 DEBUG Processing 945/1018 atomic regions from SNP 283380 to 283980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,432 DEBUG Processing 876/1129 atomic regions from SNP 262772 to 263372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,534 DEBUG Processing 946/1018 atomic regions from SNP 283680 to 284280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,724 DEBUG Processing 877/1129 atomic regions from SNP 263072 to 263672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,833 DEBUG Processing 947/1018 atomic regions from SNP 283980 to 284580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,893 DEBUG Segmenting atomic regions: 2025-01-31 09:47:04,006 DEBUG Processing 1/850 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,029 DEBUG Processing 878/1129 atomic regions from SNP 263372 to 263972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,123 DEBUG Processing 948/1018 atomic regions from SNP 284280 to 284880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,243 DEBUG Processing 2/850 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,324 DEBUG Processing 879/1129 atomic regions from SNP 263672 to 264272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,416 DEBUG Processing 949/1018 atomic regions from SNP 284580 to 285180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,481 DEBUG Processing 3/850 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,605 DEBUG Processing 880/1129 atomic regions from SNP 263972 to 264572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,691 DEBUG Processing 950/1018 atomic regions from SNP 284880 to 285480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,724 DEBUG Processing 4/850 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,879 DEBUG Processing 881/1129 atomic regions from SNP 264272 to 264872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,958 DEBUG Processing 5/850 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:04,968 DEBUG Processing 951/1018 atomic regions from SNP 285180 to 285780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,147 DEBUG Processing 882/1129 atomic regions from SNP 264572 to 265172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,186 DEBUG Processing 6/850 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,235 DEBUG Processing 952/1018 atomic regions from SNP 285480 to 286080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,409 DEBUG Processing 7/850 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,418 DEBUG Processing 883/1129 atomic regions from SNP 264872 to 265472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,511 DEBUG Processing 953/1018 atomic regions from SNP 285780 to 286380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,637 DEBUG Processing 8/850 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:05,722 DEBUG Processing 884/1129 atomic regions from SNP 265172 to 265772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,796 DEBUG Processing 954/1018 atomic regions from SNP 286080 to 286680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,870 DEBUG Processing 9/850 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,050 DEBUG Processing 885/1129 atomic regions from SNP 265472 to 266072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,087 DEBUG Processing 955/1018 atomic regions from SNP 286380 to 286980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,117 DEBUG Processing 10/850 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,353 DEBUG Processing 11/850 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,362 DEBUG Processing 886/1129 atomic regions from SNP 265772 to 266372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,387 DEBUG Processing 956/1018 atomic regions from SNP 286680 to 287280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,592 DEBUG Processing 12/850 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,671 DEBUG Processing 887/1129 atomic regions from SNP 266072 to 266672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,688 DEBUG Processing 957/1018 atomic regions from SNP 286980 to 287580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,833 DEBUG Processing 13/850 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:06,983 DEBUG Processing 958/1018 atomic regions from SNP 287280 to 287880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,985 DEBUG Processing 888/1129 atomic regions from SNP 266372 to 266972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,076 DEBUG Processing 14/850 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,269 DEBUG Processing 959/1018 atomic regions from SNP 287580 to 288180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,280 DEBUG Processing 889/1129 atomic regions from SNP 266672 to 267272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,304 DEBUG Processing 15/850 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,538 DEBUG Processing 16/850 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,551 DEBUG Processing 960/1018 atomic regions from SNP 287880 to 288480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,578 DEBUG Processing 890/1129 atomic regions from SNP 266972 to 267572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,771 DEBUG Processing 17/850 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:07,823 DEBUG Processing 961/1018 atomic regions from SNP 288180 to 288780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,891 DEBUG Processing 891/1129 atomic regions from SNP 267272 to 267872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,013 DEBUG Processing 18/850 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,120 DEBUG Processing 962/1018 atomic regions from SNP 288480 to 289080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,198 DEBUG Processing 892/1129 atomic regions from SNP 267572 to 268172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,247 DEBUG Processing 19/850 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,416 DEBUG Processing 963/1018 atomic regions from SNP 288780 to 289380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,485 DEBUG Processing 20/850 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,493 DEBUG Processing 893/1129 atomic regions from SNP 267872 to 268472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,712 DEBUG Processing 964/1018 atomic regions from SNP 289080 to 289680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,722 DEBUG Processing 21/850 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,802 DEBUG Processing 894/1129 atomic regions from SNP 268172 to 268772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,956 DEBUG Processing 22/850 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:08,989 DEBUG Processing 965/1018 atomic regions from SNP 289380 to 289980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,117 DEBUG Processing 895/1129 atomic regions from SNP 268472 to 269072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,182 DEBUG Processing 23/850 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,269 DEBUG Processing 966/1018 atomic regions from SNP 289680 to 290280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,411 DEBUG Processing 24/850 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,429 DEBUG Processing 896/1129 atomic regions from SNP 268772 to 269372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,566 DEBUG Processing 967/1018 atomic regions from SNP 289980 to 290580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,644 DEBUG Processing 25/850 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:09,749 DEBUG Processing 897/1129 atomic regions from SNP 269072 to 269672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,866 DEBUG Processing 968/1018 atomic regions from SNP 290280 to 290880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,878 DEBUG Processing 26/850 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,063 DEBUG Processing 898/1129 atomic regions from SNP 269372 to 269972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,116 DEBUG Processing 27/850 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,166 DEBUG Processing 969/1018 atomic regions from SNP 290580 to 291180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,363 DEBUG Processing 899/1129 atomic regions from SNP 269672 to 270272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,370 DEBUG Processing 28/850 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,481 DEBUG Processing 970/1018 atomic regions from SNP 290880 to 291480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,606 DEBUG Processing 29/850 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,665 DEBUG Processing 900/1129 atomic regions from SNP 269972 to 270572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,783 DEBUG Processing 971/1018 atomic regions from SNP 291180 to 291780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,847 DEBUG Processing 30/850 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:10,962 DEBUG Processing 901/1129 atomic regions from SNP 270272 to 270872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,085 DEBUG Processing 972/1018 atomic regions from SNP 291480 to 292080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,091 DEBUG Processing 31/850 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,255 DEBUG Processing 902/1129 atomic regions from SNP 270572 to 271172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,357 DEBUG Processing 32/850 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,410 DEBUG Processing 973/1018 atomic regions from SNP 291780 to 292380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,551 DEBUG Processing 903/1129 atomic regions from SNP 270872 to 271472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,608 DEBUG Processing 33/850 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,727 DEBUG Processing 974/1018 atomic regions from SNP 292080 to 292680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,844 DEBUG Processing 34/850 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:11,853 DEBUG Processing 904/1129 atomic regions from SNP 271172 to 271772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,038 DEBUG Processing 975/1018 atomic regions from SNP 292380 to 292980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,085 DEBUG Processing 35/850 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,145 DEBUG Processing 905/1129 atomic regions from SNP 271472 to 272072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,326 DEBUG Processing 36/850 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,350 DEBUG Processing 976/1018 atomic regions from SNP 292680 to 293280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,445 DEBUG Processing 906/1129 atomic regions from SNP 271772 to 272372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,562 DEBUG Processing 37/850 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,652 DEBUG Processing 977/1018 atomic regions from SNP 292980 to 293580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,733 DEBUG Processing 907/1129 atomic regions from SNP 272072 to 272672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,793 DEBUG Processing 38/850 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:12,929 DEBUG Processing 978/1018 atomic regions from SNP 293280 to 293880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,024 DEBUG Processing 908/1129 atomic regions from SNP 272372 to 272972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,024 DEBUG Processing 39/850 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,195 DEBUG Processing 979/1018 atomic regions from SNP 293580 to 294180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,254 DEBUG Processing 40/850 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,311 DEBUG Processing 909/1129 atomic regions from SNP 272672 to 273272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,462 DEBUG Processing 980/1018 atomic regions from SNP 293880 to 294480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,482 DEBUG Processing 41/850 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,615 DEBUG Processing 910/1129 atomic regions from SNP 272972 to 273572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,710 DEBUG Processing 42/850 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,731 DEBUG Processing 981/1018 atomic regions from SNP 294180 to 294780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,920 DEBUG Processing 911/1129 atomic regions from SNP 273272 to 273872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,941 DEBUG Processing 43/850 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:13,993 DEBUG Processing 982/1018 atomic regions from SNP 294480 to 295080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,175 DEBUG Processing 44/850 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,218 DEBUG Processing 912/1129 atomic regions from SNP 273572 to 274172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,255 DEBUG Processing 983/1018 atomic regions from SNP 294780 to 295380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,412 DEBUG Processing 45/850 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,516 DEBUG Processing 913/1129 atomic regions from SNP 273872 to 274472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,521 DEBUG Processing 984/1018 atomic regions from SNP 295080 to 295680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,647 DEBUG Processing 46/850 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:14,791 DEBUG Processing 985/1018 atomic regions from SNP 295380 to 295980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,812 DEBUG Processing 914/1129 atomic regions from SNP 274172 to 274772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,881 DEBUG Processing 47/850 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,060 DEBUG Processing 986/1018 atomic regions from SNP 295680 to 296280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,119 DEBUG Processing 915/1129 atomic regions from SNP 274472 to 275072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,120 DEBUG Processing 48/850 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,326 DEBUG Processing 987/1018 atomic regions from SNP 295980 to 296580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,353 DEBUG Processing 49/850 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,424 DEBUG Processing 916/1129 atomic regions from SNP 274772 to 275372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,587 DEBUG Processing 50/850 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,597 DEBUG Processing 988/1018 atomic regions from SNP 296280 to 296880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,740 DEBUG Processing 917/1129 atomic regions from SNP 275072 to 275672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,821 DEBUG Processing 51/850 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:15,887 DEBUG Processing 989/1018 atomic regions from SNP 296580 to 297180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,044 DEBUG Processing 918/1129 atomic regions from SNP 275372 to 275972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,058 DEBUG Processing 52/850 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,186 DEBUG Processing 990/1018 atomic regions from SNP 296880 to 297480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,295 DEBUG Processing 53/850 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,352 DEBUG Processing 919/1129 atomic regions from SNP 275672 to 276272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,457 DEBUG Processing 991/1018 atomic regions from SNP 297180 to 297780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,533 DEBUG Processing 54/850 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,668 DEBUG Processing 920/1129 atomic regions from SNP 275972 to 276572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,725 DEBUG Processing 992/1018 atomic regions from SNP 297480 to 298080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,769 DEBUG Processing 55/850 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:16,989 DEBUG Processing 921/1129 atomic regions from SNP 276272 to 276872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,997 DEBUG Processing 993/1018 atomic regions from SNP 297780 to 298380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,006 DEBUG Processing 56/850 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,247 DEBUG Processing 57/850 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,278 DEBUG Processing 994/1018 atomic regions from SNP 298080 to 298680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,338 DEBUG Processing 922/1129 atomic regions from SNP 276572 to 277172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,491 DEBUG Processing 58/850 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,558 DEBUG Processing 995/1018 atomic regions from SNP 298380 to 298980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,666 DEBUG Processing 923/1129 atomic regions from SNP 276872 to 277472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,732 DEBUG Processing 59/850 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,827 DEBUG Processing 996/1018 atomic regions from SNP 298680 to 299280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,973 DEBUG Processing 60/850 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:17,991 DEBUG Processing 924/1129 atomic regions from SNP 277172 to 277772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,102 DEBUG Processing 997/1018 atomic regions from SNP 298980 to 299580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,215 DEBUG Processing 61/850 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,301 DEBUG Processing 925/1129 atomic regions from SNP 277472 to 278072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,375 DEBUG Processing 998/1018 atomic regions from SNP 299280 to 299880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,445 DEBUG Processing 62/850 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,612 DEBUG Processing 926/1129 atomic regions from SNP 277772 to 278372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,659 DEBUG Processing 999/1018 atomic regions from SNP 299580 to 300180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,686 DEBUG Processing 63/850 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,930 DEBUG Processing 64/850 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:18,941 DEBUG Processing 927/1129 atomic regions from SNP 278072 to 278672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,944 DEBUG Processing 1000/1018 atomic regions from SNP 299880 to 300480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,164 DEBUG Processing 65/850 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,218 DEBUG Processing 1001/1018 atomic regions from SNP 300180 to 300780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,259 DEBUG Processing 928/1129 atomic regions from SNP 278372 to 278972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,388 DEBUG Processing 66/850 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,491 DEBUG Processing 1002/1018 atomic regions from SNP 300480 to 301080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,563 DEBUG Processing 929/1129 atomic regions from SNP 278672 to 279272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,612 DEBUG Processing 67/850 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,793 DEBUG Processing 1003/1018 atomic regions from SNP 300780 to 301380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,841 DEBUG Processing 68/850 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:19,859 DEBUG Processing 930/1129 atomic regions from SNP 278972 to 279572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,069 DEBUG Processing 69/850 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,075 DEBUG Processing 1004/1018 atomic regions from SNP 301080 to 301680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,188 DEBUG Processing 931/1129 atomic regions from SNP 279272 to 279872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,303 DEBUG Processing 70/850 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,345 DEBUG Processing 1005/1018 atomic regions from SNP 301380 to 301980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,519 DEBUG Processing 932/1129 atomic regions from SNP 279572 to 280172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,541 DEBUG Processing 71/850 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,616 DEBUG Processing 1006/1018 atomic regions from SNP 301680 to 302280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,782 DEBUG Processing 72/850 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:20,831 DEBUG Processing 933/1129 atomic regions from SNP 279872 to 280472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,924 DEBUG Processing 1007/1018 atomic regions from SNP 301980 to 302580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,016 DEBUG Processing 73/850 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,141 DEBUG Processing 934/1129 atomic regions from SNP 280172 to 280772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,217 DEBUG Processing 1008/1018 atomic regions from SNP 302280 to 302880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,248 DEBUG Processing 74/850 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,435 DEBUG Processing 935/1129 atomic regions from SNP 280472 to 281072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,482 DEBUG Processing 75/850 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,489 DEBUG Processing 1009/1018 atomic regions from SNP 302580 to 303180 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,723 DEBUG Processing 76/850 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:21,729 DEBUG Processing 936/1129 atomic regions from SNP 280772 to 281372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,767 DEBUG Processing 1010/1018 atomic regions from SNP 302880 to 303480 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,959 DEBUG Processing 77/850 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,026 DEBUG Processing 937/1129 atomic regions from SNP 281072 to 281672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,047 DEBUG Processing 1011/1018 atomic regions from SNP 303180 to 303780 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,185 DEBUG Processing 78/850 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,321 DEBUG Processing 1012/1018 atomic regions from SNP 303480 to 304080 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,321 DEBUG Processing 938/1129 atomic regions from SNP 281372 to 281972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,413 DEBUG Processing 79/850 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,594 DEBUG Processing 1013/1018 atomic regions from SNP 303780 to 304380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,616 DEBUG Processing 939/1129 atomic regions from SNP 281672 to 282272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,650 DEBUG Processing 80/850 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,871 DEBUG Processing 1014/1018 atomic regions from SNP 304080 to 304680 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,893 DEBUG Processing 81/850 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:22,930 DEBUG Processing 940/1129 atomic regions from SNP 281972 to 282572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,128 DEBUG Processing 82/850 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,159 DEBUG Processing 1015/1018 atomic regions from SNP 304380 to 304980 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,240 DEBUG Processing 941/1129 atomic regions from SNP 282272 to 282872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,384 DEBUG Processing 83/850 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,470 DEBUG Processing 1016/1018 atomic regions from SNP 304680 to 305280 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,577 DEBUG Processing 942/1129 atomic regions from SNP 282572 to 283172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,640 DEBUG Processing 84/850 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,760 DEBUG Processing 1017/1018 atomic regions from SNP 304980 to 305580 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,891 DEBUG Processing 85/850 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:23,901 DEBUG Processing 943/1129 atomic regions from SNP 282872 to 283472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,024 DEBUG Processing 1018/1018 atomic regions from SNP 305280 to 305880 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,139 DEBUG Processing 86/850 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,165 DEBUG Unique SNPs positions in subchromosome 1: 305881 2025-01-31 09:47:24,208 DEBUG Processing 944/1129 atomic regions from SNP 283172 to 283772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,380 DEBUG Processing 87/850 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,512 DEBUG Processing 945/1129 atomic regions from SNP 283472 to 284072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,615 DEBUG Processing 88/850 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:24,833 DEBUG Processing 946/1129 atomic regions from SNP 283772 to 284372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,851 DEBUG Processing 89/850 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,092 DEBUG Processing 90/850 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,171 DEBUG Processing 947/1129 atomic regions from SNP 284072 to 284672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,330 DEBUG Processing 91/850 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,508 DEBUG Processing 948/1129 atomic regions from SNP 284372 to 284972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,559 DEBUG Processing 92/850 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,790 DEBUG Processing 93/850 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:25,839 DEBUG Processing 949/1129 atomic regions from SNP 284672 to 285272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,027 DEBUG Processing 94/850 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,179 DEBUG Processing 950/1129 atomic regions from SNP 284972 to 285572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,268 DEBUG Processing 95/850 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,509 DEBUG Processing 96/850 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,529 DEBUG Processing 951/1129 atomic regions from SNP 285272 to 285872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,747 DEBUG Processing 97/850 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:26,867 DEBUG Processing 952/1129 atomic regions from SNP 285572 to 286172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,984 DEBUG Processing 98/850 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,191 DEBUG Processing 953/1129 atomic regions from SNP 285872 to 286472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,222 DEBUG Processing 99/850 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,464 DEBUG Processing 100/850 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,528 DEBUG Processing 954/1129 atomic regions from SNP 286172 to 286772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,703 DEBUG Processing 101/850 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:27,865 DEBUG Processing 955/1129 atomic regions from SNP 286472 to 287072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,934 DEBUG Processing 102/850 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,168 DEBUG Processing 103/850 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,171 DEBUG Processing 956/1129 atomic regions from SNP 286772 to 287372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,410 DEBUG Processing 104/850 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,473 DEBUG Processing 957/1129 atomic regions from SNP 287072 to 287672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,661 DEBUG Processing 105/850 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:28,778 DEBUG Processing 958/1129 atomic regions from SNP 287372 to 287972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,917 DEBUG Processing 106/850 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,097 DEBUG Processing 959/1129 atomic regions from SNP 287672 to 288272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,163 DEBUG Processing 107/850 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,408 DEBUG Processing 108/850 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,439 DEBUG Processing 960/1129 atomic regions from SNP 287972 to 288572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,650 DEBUG Processing 109/850 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:29,759 DEBUG Processing 961/1129 atomic regions from SNP 288272 to 288872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,884 DEBUG Processing 110/850 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,065 DEBUG Processing 962/1129 atomic regions from SNP 288572 to 289172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,115 DEBUG Processing 111/850 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,348 DEBUG Processing 112/850 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,362 DEBUG Processing 963/1129 atomic regions from SNP 288872 to 289472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,582 DEBUG Processing 113/850 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,655 DEBUG Processing 964/1129 atomic regions from SNP 289172 to 289772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,820 DEBUG Processing 114/850 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:30,959 DEBUG Processing 965/1129 atomic regions from SNP 289472 to 290072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,052 DEBUG Processing 115/850 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,286 DEBUG Processing 116/850 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,289 DEBUG Processing 966/1129 atomic regions from SNP 289772 to 290372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,523 DEBUG Processing 117/850 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,603 DEBUG Processing 967/1129 atomic regions from SNP 290072 to 290672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,764 DEBUG Processing 118/850 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:31,898 DEBUG Processing 968/1129 atomic regions from SNP 290372 to 290972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,006 DEBUG Processing 119/850 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,193 DEBUG Processing 969/1129 atomic regions from SNP 290672 to 291272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,251 DEBUG Processing 120/850 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,486 DEBUG Processing 121/850 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,486 DEBUG Processing 970/1129 atomic regions from SNP 290972 to 291572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,715 DEBUG Processing 122/850 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:32,784 DEBUG Processing 971/1129 atomic regions from SNP 291272 to 291872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,941 DEBUG Processing 123/850 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,091 DEBUG Processing 972/1129 atomic regions from SNP 291572 to 292172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,172 DEBUG Processing 124/850 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,401 DEBUG Processing 973/1129 atomic regions from SNP 291872 to 292472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,405 DEBUG Processing 125/850 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,642 DEBUG Processing 126/850 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:33,704 DEBUG Processing 974/1129 atomic regions from SNP 292172 to 292772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,876 DEBUG Processing 127/850 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,008 DEBUG Processing 975/1129 atomic regions from SNP 292472 to 293072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,110 DEBUG Processing 128/850 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,305 DEBUG Processing 976/1129 atomic regions from SNP 292772 to 293372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,350 DEBUG Processing 129/850 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,594 DEBUG Processing 130/850 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,608 DEBUG Processing 977/1129 atomic regions from SNP 293072 to 293672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,831 DEBUG Processing 131/850 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:34,919 DEBUG Processing 978/1129 atomic regions from SNP 293372 to 293972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,066 DEBUG Processing 132/850 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,218 DEBUG Processing 979/1129 atomic regions from SNP 293672 to 294272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,308 DEBUG Processing 133/850 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,544 DEBUG Processing 980/1129 atomic regions from SNP 293972 to 294572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,553 DEBUG Processing 134/850 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,797 DEBUG Processing 135/850 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:35,864 DEBUG Processing 981/1129 atomic regions from SNP 294272 to 294872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,034 DEBUG Processing 136/850 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,187 DEBUG Processing 982/1129 atomic regions from SNP 294572 to 295172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,269 DEBUG Processing 137/850 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,506 DEBUG Processing 138/850 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,516 DEBUG Processing 983/1129 atomic regions from SNP 294872 to 295472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,745 DEBUG Processing 139/850 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:36,852 DEBUG Processing 984/1129 atomic regions from SNP 295172 to 295772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,989 DEBUG Processing 140/850 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,192 DEBUG Processing 985/1129 atomic regions from SNP 295472 to 296072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,232 DEBUG Processing 141/850 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,470 DEBUG Processing 142/850 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,517 DEBUG Processing 986/1129 atomic regions from SNP 295772 to 296372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,728 DEBUG Processing 143/850 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:37,813 DEBUG Processing 987/1129 atomic regions from SNP 296072 to 296672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,995 DEBUG Processing 144/850 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,111 DEBUG Processing 988/1129 atomic regions from SNP 296372 to 296972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,226 DEBUG Processing 145/850 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,447 DEBUG Processing 989/1129 atomic regions from SNP 296672 to 297272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,470 DEBUG Processing 146/850 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,710 DEBUG Processing 147/850 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:38,791 DEBUG Processing 990/1129 atomic regions from SNP 296972 to 297572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,974 DEBUG Processing 148/850 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,122 DEBUG Processing 991/1129 atomic regions from SNP 297272 to 297872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,245 DEBUG Processing 149/850 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,424 DEBUG Processing 992/1129 atomic regions from SNP 297572 to 298172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,511 DEBUG Processing 150/850 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:39,728 DEBUG Processing 993/1129 atomic regions from SNP 297872 to 298472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,773 DEBUG Processing 151/850 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,040 DEBUG Processing 994/1129 atomic regions from SNP 298172 to 298772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,041 DEBUG Processing 152/850 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,297 DEBUG Processing 153/850 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,358 DEBUG Processing 995/1129 atomic regions from SNP 298472 to 299072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,563 DEBUG Processing 154/850 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,670 DEBUG Processing 996/1129 atomic regions from SNP 298772 to 299372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,834 DEBUG Processing 155/850 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:40,982 DEBUG Processing 997/1129 atomic regions from SNP 299072 to 299672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,099 DEBUG Processing 156/850 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,288 DEBUG Processing 998/1129 atomic regions from SNP 299372 to 299972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,353 DEBUG Processing 157/850 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,591 DEBUG Processing 999/1129 atomic regions from SNP 299672 to 300272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,609 DEBUG Processing 158/850 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,846 DEBUG Processing 159/850 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:41,894 DEBUG Processing 1000/1129 atomic regions from SNP 299972 to 300572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,098 DEBUG Processing 160/850 atomic regions from SNP 47859 to 48459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,195 DEBUG Processing 1001/1129 atomic regions from SNP 300272 to 300872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,354 DEBUG Processing 161/850 atomic regions from SNP 48159 to 48759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,497 DEBUG Processing 1002/1129 atomic regions from SNP 300572 to 301172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,598 DEBUG Processing 162/850 atomic regions from SNP 48459 to 49059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:42,799 DEBUG Processing 1003/1129 atomic regions from SNP 300872 to 301472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,872 DEBUG Processing 163/850 atomic regions from SNP 48759 to 49359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,104 DEBUG Processing 1004/1129 atomic regions from SNP 301172 to 301772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,126 DEBUG Processing 164/850 atomic regions from SNP 49059 to 49659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,365 DEBUG Processing 165/850 atomic regions from SNP 49359 to 49959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,412 DEBUG Processing 1005/1129 atomic regions from SNP 301472 to 302072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,598 DEBUG Processing 166/850 atomic regions from SNP 49659 to 50259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:43,718 DEBUG Processing 1006/1129 atomic regions from SNP 301772 to 302372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,830 DEBUG Processing 167/850 atomic regions from SNP 49959 to 50559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,024 DEBUG Processing 1007/1129 atomic regions from SNP 302072 to 302672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,065 DEBUG Processing 168/850 atomic regions from SNP 50259 to 50859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,313 DEBUG Processing 169/850 atomic regions from SNP 50559 to 51159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,335 DEBUG Processing 1008/1129 atomic regions from SNP 302372 to 302972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,552 DEBUG Processing 170/850 atomic regions from SNP 50859 to 51459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,642 DEBUG Processing 1009/1129 atomic regions from SNP 302672 to 303272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,789 DEBUG Processing 171/850 atomic regions from SNP 51159 to 51759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:44,947 DEBUG Processing 1010/1129 atomic regions from SNP 302972 to 303572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,016 DEBUG Processing 172/850 atomic regions from SNP 51459 to 52059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,246 DEBUG Processing 173/850 atomic regions from SNP 51759 to 52359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,252 DEBUG Processing 1011/1129 atomic regions from SNP 303272 to 303872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,484 DEBUG Processing 174/850 atomic regions from SNP 52059 to 52659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,561 DEBUG Processing 1012/1129 atomic regions from SNP 303572 to 304172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,723 DEBUG Processing 175/850 atomic regions from SNP 52359 to 52959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:45,866 DEBUG Processing 1013/1129 atomic regions from SNP 303872 to 304472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,961 DEBUG Processing 176/850 atomic regions from SNP 52659 to 53259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,169 DEBUG Processing 1014/1129 atomic regions from SNP 304172 to 304772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,196 DEBUG Processing 177/850 atomic regions from SNP 52959 to 53559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,426 DEBUG Processing 178/850 atomic regions from SNP 53259 to 53859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,473 DEBUG Processing 1015/1129 atomic regions from SNP 304472 to 305072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,655 DEBUG Processing 179/850 atomic regions from SNP 53559 to 54159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:46,779 DEBUG Processing 1016/1129 atomic regions from SNP 304772 to 305372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,899 DEBUG Processing 180/850 atomic regions from SNP 53859 to 54459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,115 DEBUG Processing 1017/1129 atomic regions from SNP 305072 to 305672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,148 DEBUG Processing 181/850 atomic regions from SNP 54159 to 54759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,387 DEBUG Processing 182/850 atomic regions from SNP 54459 to 55059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,423 DEBUG Processing 1018/1129 atomic regions from SNP 305372 to 305972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,640 DEBUG Processing 183/850 atomic regions from SNP 54759 to 55359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:47,730 DEBUG Processing 1019/1129 atomic regions from SNP 305672 to 306272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,897 DEBUG Processing 184/850 atomic regions from SNP 55059 to 55659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,037 DEBUG Processing 1020/1129 atomic regions from SNP 305972 to 306572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,139 DEBUG Processing 185/850 atomic regions from SNP 55359 to 55959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,346 DEBUG Processing 1021/1129 atomic regions from SNP 306272 to 306872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,400 DEBUG Processing 186/850 atomic regions from SNP 55659 to 56259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,638 DEBUG Processing 187/850 atomic regions from SNP 55959 to 56559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,653 DEBUG Processing 1022/1129 atomic regions from SNP 306572 to 307172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,875 DEBUG Processing 188/850 atomic regions from SNP 56259 to 56859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:48,964 DEBUG Processing 1023/1129 atomic regions from SNP 306872 to 307472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,113 DEBUG Processing 189/850 atomic regions from SNP 56559 to 57159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,274 DEBUG Processing 1024/1129 atomic regions from SNP 307172 to 307772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,353 DEBUG Processing 190/850 atomic regions from SNP 56859 to 57459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,593 DEBUG Processing 191/850 atomic regions from SNP 57159 to 57759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,598 DEBUG Processing 1025/1129 atomic regions from SNP 307472 to 308072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,825 DEBUG Processing 192/850 atomic regions from SNP 57459 to 58059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:49,938 DEBUG Processing 1026/1129 atomic regions from SNP 307772 to 308372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,049 DEBUG Processing 193/850 atomic regions from SNP 57759 to 58359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,258 DEBUG Processing 1027/1129 atomic regions from SNP 308072 to 308672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,276 DEBUG Processing 194/850 atomic regions from SNP 58059 to 58659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,506 DEBUG Processing 195/850 atomic regions from SNP 58359 to 58959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,557 DEBUG Processing 1028/1129 atomic regions from SNP 308372 to 308972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,741 DEBUG Processing 196/850 atomic regions from SNP 58659 to 59259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:50,860 DEBUG Processing 1029/1129 atomic regions from SNP 308672 to 309272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,975 DEBUG Processing 197/850 atomic regions from SNP 58959 to 59559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,162 DEBUG Processing 1030/1129 atomic regions from SNP 308972 to 309572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,203 DEBUG Processing 198/850 atomic regions from SNP 59259 to 59859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,432 DEBUG Processing 199/850 atomic regions from SNP 59559 to 60159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,469 DEBUG Processing 1031/1129 atomic regions from SNP 309272 to 309872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,665 DEBUG Processing 200/850 atomic regions from SNP 59859 to 60459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:51,765 DEBUG Processing 1032/1129 atomic regions from SNP 309572 to 310172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,921 DEBUG Processing 201/850 atomic regions from SNP 60159 to 60759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,081 DEBUG Processing 1033/1129 atomic regions from SNP 309872 to 310472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,162 DEBUG Processing 202/850 atomic regions from SNP 60459 to 61059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,402 DEBUG Processing 203/850 atomic regions from SNP 60759 to 61359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,410 DEBUG Processing 1034/1129 atomic regions from SNP 310172 to 310772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,662 DEBUG Processing 204/850 atomic regions from SNP 61059 to 61659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:52,742 DEBUG Processing 1035/1129 atomic regions from SNP 310472 to 311072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,925 DEBUG Processing 205/850 atomic regions from SNP 61359 to 61959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,065 DEBUG Processing 1036/1129 atomic regions from SNP 310772 to 311372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,182 DEBUG Processing 206/850 atomic regions from SNP 61659 to 62259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,395 DEBUG Processing 1037/1129 atomic regions from SNP 311072 to 311672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,437 DEBUG Processing 207/850 atomic regions from SNP 61959 to 62559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,699 DEBUG Processing 208/850 atomic regions from SNP 62259 to 62859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:53,737 DEBUG Processing 1038/1129 atomic regions from SNP 311372 to 311972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,945 DEBUG Processing 209/850 atomic regions from SNP 62559 to 63159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,077 DEBUG Processing 1039/1129 atomic regions from SNP 311672 to 312272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,188 DEBUG Processing 210/850 atomic regions from SNP 62859 to 63459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,416 DEBUG Processing 1040/1129 atomic regions from SNP 311972 to 312572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,442 DEBUG Processing 211/850 atomic regions from SNP 63159 to 63759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,482 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:47:54,694 DEBUG Processing 212/850 atomic regions from SNP 63459 to 64059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:54,736 DEBUG Processing 1041/1129 atomic regions from SNP 312272 to 312872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,935 DEBUG Processing 213/850 atomic regions from SNP 63759 to 64359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,072 DEBUG Processing 1042/1129 atomic regions from SNP 312572 to 313172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,176 DEBUG Processing 214/850 atomic regions from SNP 64059 to 64659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,394 DEBUG Processing 1043/1129 atomic regions from SNP 312872 to 313472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,415 DEBUG Processing 215/850 atomic regions from SNP 64359 to 64959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,655 DEBUG Processing 216/850 atomic regions from SNP 64659 to 65259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:55,726 DEBUG Processing 1044/1129 atomic regions from SNP 313172 to 313772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,892 DEBUG Processing 217/850 atomic regions from SNP 64959 to 65559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,062 DEBUG Processing 1045/1129 atomic regions from SNP 313472 to 314072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,126 DEBUG Processing 218/850 atomic regions from SNP 65259 to 65859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,360 DEBUG Processing 219/850 atomic regions from SNP 65559 to 66159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,369 DEBUG Processing 1046/1129 atomic regions from SNP 313772 to 314372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,597 DEBUG Processing 220/850 atomic regions from SNP 65859 to 66459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,677 DEBUG Processing 1047/1129 atomic regions from SNP 314072 to 314672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,832 DEBUG Processing 221/850 atomic regions from SNP 66159 to 66759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:56,989 DEBUG Processing 1048/1129 atomic regions from SNP 314372 to 314972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,067 DEBUG Processing 222/850 atomic regions from SNP 66459 to 67059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,289 DEBUG Processing 1049/1129 atomic regions from SNP 314672 to 315272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,298 DEBUG Processing 223/850 atomic regions from SNP 66759 to 67359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,528 DEBUG Processing 224/850 atomic regions from SNP 67059 to 67659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,592 DEBUG Processing 1050/1129 atomic regions from SNP 314972 to 315572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,760 DEBUG Processing 225/850 atomic regions from SNP 67359 to 67959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:57,898 DEBUG Processing 1051/1129 atomic regions from SNP 315272 to 315872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,991 DEBUG Processing 226/850 atomic regions from SNP 67659 to 68259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,198 DEBUG Processing 1052/1129 atomic regions from SNP 315572 to 316172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,224 DEBUG Processing 227/850 atomic regions from SNP 67959 to 68559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,458 DEBUG Processing 228/850 atomic regions from SNP 68259 to 68859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,491 DEBUG Processing 1053/1129 atomic regions from SNP 315872 to 316472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,687 DEBUG Processing 229/850 atomic regions from SNP 68559 to 69159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:58,785 DEBUG Processing 1054/1129 atomic regions from SNP 316172 to 316772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,925 DEBUG Processing 230/850 atomic regions from SNP 68859 to 69459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,074 DEBUG Processing 1055/1129 atomic regions from SNP 316472 to 317072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,161 DEBUG Processing 231/850 atomic regions from SNP 69159 to 69759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,366 DEBUG Processing 1056/1129 atomic regions from SNP 316772 to 317372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,395 DEBUG Processing 232/850 atomic regions from SNP 69459 to 70059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,631 DEBUG Processing 233/850 atomic regions from SNP 69759 to 70359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,684 DEBUG Processing 1057/1129 atomic regions from SNP 317072 to 317672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,867 DEBUG Processing 234/850 atomic regions from SNP 70059 to 70659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:47:59,983 DEBUG Processing 1058/1129 atomic regions from SNP 317372 to 317972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,104 DEBUG Processing 235/850 atomic regions from SNP 70359 to 70959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,268 DEBUG Processing 1059/1129 atomic regions from SNP 317672 to 318272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,340 DEBUG Processing 236/850 atomic regions from SNP 70659 to 71259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,558 DEBUG Processing 1060/1129 atomic regions from SNP 317972 to 318572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,573 DEBUG Processing 237/850 atomic regions from SNP 70959 to 71559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,801 DEBUG Processing 238/850 atomic regions from SNP 71259 to 71859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:00,851 DEBUG Processing 1061/1129 atomic regions from SNP 318272 to 318872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,034 DEBUG Processing 239/850 atomic regions from SNP 71559 to 72159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,142 DEBUG Processing 1062/1129 atomic regions from SNP 318572 to 319172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,274 DEBUG Processing 240/850 atomic regions from SNP 71859 to 72459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,429 DEBUG Processing 1063/1129 atomic regions from SNP 318872 to 319472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,512 DEBUG Processing 241/850 atomic regions from SNP 72159 to 72759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,727 DEBUG Processing 1064/1129 atomic regions from SNP 319172 to 319772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,750 DEBUG Processing 242/850 atomic regions from SNP 72459 to 73059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:01,980 DEBUG Processing 243/850 atomic regions from SNP 72759 to 73359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,060 DEBUG Processing 1065/1129 atomic regions from SNP 319472 to 320072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,211 DEBUG Processing 244/850 atomic regions from SNP 73059 to 73659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,393 DEBUG Processing 1066/1129 atomic regions from SNP 319772 to 320372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,439 DEBUG Processing 245/850 atomic regions from SNP 73359 to 73959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,665 DEBUG Processing 246/850 atomic regions from SNP 73659 to 74259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,685 DEBUG Processing 1067/1129 atomic regions from SNP 320072 to 320672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,895 DEBUG Processing 247/850 atomic regions from SNP 73959 to 74559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:02,996 DEBUG Processing 1068/1129 atomic regions from SNP 320372 to 320972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,130 DEBUG Processing 248/850 atomic regions from SNP 74259 to 74859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,329 DEBUG Processing 1069/1129 atomic regions from SNP 320672 to 321272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,370 DEBUG Processing 249/850 atomic regions from SNP 74559 to 75159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,610 DEBUG Processing 250/850 atomic regions from SNP 74859 to 75459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,655 DEBUG Processing 1070/1129 atomic regions from SNP 320972 to 321572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,843 DEBUG Processing 251/850 atomic regions from SNP 75159 to 75759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:03,957 DEBUG Processing 1071/1129 atomic regions from SNP 321272 to 321872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,076 DEBUG Processing 252/850 atomic regions from SNP 75459 to 76059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,254 DEBUG Processing 1072/1129 atomic regions from SNP 321572 to 322172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,314 DEBUG Processing 253/850 atomic regions from SNP 75759 to 76359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,551 DEBUG Processing 254/850 atomic regions from SNP 76059 to 76659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,558 DEBUG Processing 1073/1129 atomic regions from SNP 321872 to 322472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,790 DEBUG Processing 255/850 atomic regions from SNP 76359 to 76959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:04,862 DEBUG Processing 1074/1129 atomic regions from SNP 322172 to 322772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,031 DEBUG Processing 256/850 atomic regions from SNP 76659 to 77259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,148 DEBUG Processing 1075/1129 atomic regions from SNP 322472 to 323072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,281 DEBUG Processing 257/850 atomic regions from SNP 76959 to 77559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,432 DEBUG Processing 1076/1129 atomic regions from SNP 322772 to 323372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,556 DEBUG Processing 258/850 atomic regions from SNP 77259 to 77859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,724 DEBUG Processing 1077/1129 atomic regions from SNP 323072 to 323672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,827 DEBUG Processing 259/850 atomic regions from SNP 77559 to 78159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,028 DEBUG Processing 1078/1129 atomic regions from SNP 323372 to 323972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,085 DEBUG Processing 260/850 atomic regions from SNP 77859 to 78459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,332 DEBUG Processing 261/850 atomic regions from SNP 78159 to 78759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,339 DEBUG Processing 1079/1129 atomic regions from SNP 323672 to 324272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,577 DEBUG Processing 262/850 atomic regions from SNP 78459 to 79059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,643 DEBUG Processing 1080/1129 atomic regions from SNP 323972 to 324572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,811 DEBUG Processing 263/850 atomic regions from SNP 78759 to 79359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,948 DEBUG Processing 1081/1129 atomic regions from SNP 324272 to 324872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,039 DEBUG Processing 264/850 atomic regions from SNP 79059 to 79659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,241 DEBUG Processing 1082/1129 atomic regions from SNP 324572 to 325172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,275 DEBUG Processing 265/850 atomic regions from SNP 79359 to 79959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,530 DEBUG Processing 1083/1129 atomic regions from SNP 324872 to 325472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,535 DEBUG Processing 266/850 atomic regions from SNP 79659 to 80259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,812 DEBUG Processing 267/850 atomic regions from SNP 79959 to 80559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,822 DEBUG Processing 1084/1129 atomic regions from SNP 325172 to 325772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,065 DEBUG Processing 268/850 atomic regions from SNP 80259 to 80859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,121 DEBUG Processing 1085/1129 atomic regions from SNP 325472 to 326072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,295 DEBUG Processing 269/850 atomic regions from SNP 80559 to 81159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,428 DEBUG Processing 1086/1129 atomic regions from SNP 325772 to 326372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,523 DEBUG Processing 270/850 atomic regions from SNP 80859 to 81459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,725 DEBUG Processing 1087/1129 atomic regions from SNP 326072 to 326672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,755 DEBUG Processing 271/850 atomic regions from SNP 81159 to 81759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,994 DEBUG Processing 272/850 atomic regions from SNP 81459 to 82059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,023 DEBUG Processing 1088/1129 atomic regions from SNP 326372 to 326972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,232 DEBUG Processing 273/850 atomic regions from SNP 81759 to 82359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,323 DEBUG Processing 1089/1129 atomic regions from SNP 326672 to 327272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,467 DEBUG Processing 274/850 atomic regions from SNP 82059 to 82659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,624 DEBUG Processing 1090/1129 atomic regions from SNP 326972 to 327572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,702 DEBUG Processing 275/850 atomic regions from SNP 82359 to 82959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,924 DEBUG Processing 1091/1129 atomic regions from SNP 327272 to 327872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,949 DEBUG Processing 276/850 atomic regions from SNP 82659 to 83259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,193 DEBUG Processing 277/850 atomic regions from SNP 82959 to 83559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,228 DEBUG Processing 1092/1129 atomic regions from SNP 327572 to 328172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,432 DEBUG Processing 278/850 atomic regions from SNP 83259 to 83859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,526 DEBUG Processing 1093/1129 atomic regions from SNP 327872 to 328472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,662 DEBUG Processing 279/850 atomic regions from SNP 83559 to 84159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,825 DEBUG Processing 1094/1129 atomic regions from SNP 328172 to 328772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,921 DEBUG Processing 280/850 atomic regions from SNP 83859 to 84459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,129 DEBUG Processing 1095/1129 atomic regions from SNP 328472 to 329072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,173 DEBUG Processing 281/850 atomic regions from SNP 84159 to 84759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,401 DEBUG Processing 282/850 atomic regions from SNP 84459 to 85059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,449 DEBUG Processing 1096/1129 atomic regions from SNP 328772 to 329372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,628 DEBUG Processing 283/850 atomic regions from SNP 84759 to 85359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,761 DEBUG Processing 1097/1129 atomic regions from SNP 329072 to 329672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,856 DEBUG Processing 284/850 atomic regions from SNP 85059 to 85659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,065 DEBUG Processing 1098/1129 atomic regions from SNP 329372 to 329972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,088 DEBUG Processing 285/850 atomic regions from SNP 85359 to 85959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,324 DEBUG Processing 286/850 atomic regions from SNP 85659 to 86259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,365 DEBUG Processing 1099/1129 atomic regions from SNP 329672 to 330272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,560 DEBUG Processing 287/850 atomic regions from SNP 85959 to 86559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,674 DEBUG Processing 1100/1129 atomic regions from SNP 329972 to 330572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,790 DEBUG Processing 288/850 atomic regions from SNP 86259 to 86859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,979 DEBUG Processing 1101/1129 atomic regions from SNP 330272 to 330872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,022 DEBUG Processing 289/850 atomic regions from SNP 86559 to 87159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,261 DEBUG Processing 290/850 atomic regions from SNP 86859 to 87459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,285 DEBUG Processing 1102/1129 atomic regions from SNP 330572 to 331172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,498 DEBUG Processing 291/850 atomic regions from SNP 87159 to 87759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,608 DEBUG Processing 1103/1129 atomic regions from SNP 330872 to 331472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,733 DEBUG Processing 292/850 atomic regions from SNP 87459 to 88059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,945 DEBUG Processing 1104/1129 atomic regions from SNP 331172 to 331772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,966 DEBUG Processing 293/850 atomic regions from SNP 87759 to 88359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,203 DEBUG Processing 294/850 atomic regions from SNP 88059 to 88659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,275 DEBUG Processing 1105/1129 atomic regions from SNP 331472 to 332072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,448 DEBUG Processing 295/850 atomic regions from SNP 88359 to 88959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,617 DEBUG Processing 1106/1129 atomic regions from SNP 331772 to 332372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,684 DEBUG Processing 296/850 atomic regions from SNP 88659 to 89259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,917 DEBUG Processing 297/850 atomic regions from SNP 88959 to 89559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,942 DEBUG Processing 1107/1129 atomic regions from SNP 332072 to 332672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,141 DEBUG Processing 298/850 atomic regions from SNP 89259 to 89859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,263 DEBUG Processing 1108/1129 atomic regions from SNP 332372 to 332972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,366 DEBUG Processing 299/850 atomic regions from SNP 89559 to 90159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,586 DEBUG Processing 1109/1129 atomic regions from SNP 332672 to 333272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,627 DEBUG Processing 300/850 atomic regions from SNP 89859 to 90459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,895 DEBUG Processing 301/850 atomic regions from SNP 90159 to 90759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,933 DEBUG Processing 1110/1129 atomic regions from SNP 332972 to 333572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,149 DEBUG Processing 302/850 atomic regions from SNP 90459 to 91059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,262 DEBUG Processing 1111/1129 atomic regions from SNP 333272 to 333872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,308 DEBUG Subchromosome time: 374.4992106279824, subchromosome SNPs: 305881 2025-01-31 09:48:16,311 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:16,393 DEBUG Processing 303/850 atomic regions from SNP 90759 to 91359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,565 DEBUG Processing 1112/1129 atomic regions from SNP 333572 to 334172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,626 DEBUG Processing 304/850 atomic regions from SNP 91059 to 91659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,857 DEBUG Processing 305/850 atomic regions from SNP 91359 to 91959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,865 DEBUG Processing 1113/1129 atomic regions from SNP 333872 to 334472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,090 DEBUG Processing 306/850 atomic regions from SNP 91659 to 92259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,162 DEBUG Processing 1114/1129 atomic regions from SNP 334172 to 334772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,259 DEBUG Segmenting atomic regions: 2025-01-31 09:48:17,328 DEBUG Processing 307/850 atomic regions from SNP 91959 to 92559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,398 DEBUG Processing 1/25 atomic regions from SNP 0 to 604 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:17,463 DEBUG Processing 1115/1129 atomic regions from SNP 334472 to 335072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,565 DEBUG Processing 308/850 atomic regions from SNP 92259 to 92859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,667 DEBUG Processing 2/25 atomic regions from SNP 304 to 908 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:17,765 DEBUG Processing 1116/1129 atomic regions from SNP 334772 to 335372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,802 DEBUG Processing 309/850 atomic regions from SNP 92559 to 93159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,945 DEBUG Processing 3/25 atomic regions from SNP 608 to 1211 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:18,039 DEBUG Processing 310/850 atomic regions from SNP 92859 to 93459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,078 DEBUG Processing 1117/1129 atomic regions from SNP 335072 to 335672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,217 DEBUG Processing 4/25 atomic regions from SNP 911 to 1514 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:18,284 DEBUG Processing 311/850 atomic regions from SNP 93159 to 93759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,385 DEBUG Processing 1118/1129 atomic regions from SNP 335372 to 335972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,505 DEBUG Processing 5/25 atomic regions from SNP 1214 to 1817 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:18,534 DEBUG Processing 312/850 atomic regions from SNP 93459 to 94059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,661 DEBUG Processing 1119/1129 atomic regions from SNP 335672 to 336272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,770 DEBUG Processing 6/25 atomic regions from SNP 1517 to 2120 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:18,794 DEBUG Processing 313/850 atomic regions from SNP 93759 to 94359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,949 DEBUG Processing 1120/1129 atomic regions from SNP 335972 to 336572 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,039 DEBUG Processing 7/25 atomic regions from SNP 1820 to 2423 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:19,052 DEBUG Processing 314/850 atomic regions from SNP 94059 to 94659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,245 DEBUG Processing 1121/1129 atomic regions from SNP 336272 to 336872 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,299 DEBUG Processing 315/850 atomic regions from SNP 94359 to 94959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,308 DEBUG Processing 8/25 atomic regions from SNP 2123 to 2726 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:19,522 DEBUG Processing 1122/1129 atomic regions from SNP 336572 to 337172 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,545 DEBUG Processing 316/850 atomic regions from SNP 94659 to 95259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,581 DEBUG Processing 9/25 atomic regions from SNP 2426 to 3029 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:19,784 DEBUG Processing 317/850 atomic regions from SNP 94959 to 95559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,808 DEBUG Processing 1123/1129 atomic regions from SNP 336872 to 337472 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,841 DEBUG Processing 10/25 atomic regions from SNP 2729 to 3332 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,044 DEBUG Processing 318/850 atomic regions from SNP 95259 to 95859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,083 DEBUG Processing 1124/1129 atomic regions from SNP 337172 to 337772 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,091 DEBUG Processing 11/25 atomic regions from SNP 3032 to 3635 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,172 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:20,292 DEBUG Processing 319/850 atomic regions from SNP 95559 to 96159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,351 DEBUG Processing 12/25 atomic regions from SNP 3335 to 3938 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,361 DEBUG Processing 1125/1129 atomic regions from SNP 337472 to 338072 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,542 DEBUG Processing 320/850 atomic regions from SNP 95859 to 96459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,636 DEBUG Processing 13/25 atomic regions from SNP 3638 to 4241 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,672 DEBUG Processing 1126/1129 atomic regions from SNP 337772 to 338372 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,789 DEBUG Processing 321/850 atomic regions from SNP 96159 to 96759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,945 DEBUG Processing 14/25 atomic regions from SNP 3941 to 4544 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:20,983 DEBUG Processing 1127/1129 atomic regions from SNP 338072 to 338672 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,035 DEBUG Processing 322/850 atomic regions from SNP 96459 to 97059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,249 DEBUG Processing 15/25 atomic regions from SNP 4244 to 4847 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,272 DEBUG Processing 1128/1129 atomic regions from SNP 338372 to 338972 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,275 DEBUG Processing 323/850 atomic regions from SNP 96759 to 97359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,514 DEBUG Processing 324/850 atomic regions from SNP 97059 to 97659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,548 DEBUG Processing 16/25 atomic regions from SNP 4547 to 5150 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,562 DEBUG Processing 1129/1129 atomic regions from SNP 338672 to 339272 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,704 DEBUG Unique SNPs positions in subchromosome 1: 339273 2025-01-31 09:48:21,755 DEBUG Processing 325/850 atomic regions from SNP 97359 to 97959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,847 DEBUG Processing 17/25 atomic regions from SNP 4850 to 5453 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:21,991 DEBUG Processing 326/850 atomic regions from SNP 97659 to 98259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,143 DEBUG Processing 18/25 atomic regions from SNP 5153 to 5756 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,226 DEBUG Processing 327/850 atomic regions from SNP 97959 to 98559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,254 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:48:22,256 DEBUG chr7: Signal quantile: 0.989. signal threshold: 17. Best RMSEA: 0.013 2025-01-31 09:48:22,448 DEBUG Processing 19/25 atomic regions from SNP 5456 to 6059 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,460 DEBUG Processing 328/850 atomic regions from SNP 98259 to 98859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,697 DEBUG Processing 329/850 atomic regions from SNP 98559 to 99159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,742 DEBUG Processing 20/25 atomic regions from SNP 5759 to 6362 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:22,792 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:48:22,936 DEBUG Processing 330/850 atomic regions from SNP 98859 to 99459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,046 DEBUG Processing 21/25 atomic regions from SNP 6062 to 6665 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,177 DEBUG Processing 331/850 atomic regions from SNP 99159 to 99759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,345 DEBUG Processing 22/25 atomic regions from SNP 6365 to 6968 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,416 DEBUG Processing 332/850 atomic regions from SNP 99459 to 100059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,652 DEBUG Processing 23/25 atomic regions from SNP 6668 to 7271 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:23,661 DEBUG Processing 333/850 atomic regions from SNP 99759 to 100359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,908 DEBUG Processing 334/850 atomic regions from SNP 100059 to 100659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,963 DEBUG Processing 24/25 atomic regions from SNP 6971 to 7574 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,152 DEBUG Processing 335/850 atomic regions from SNP 100359 to 100959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,266 DEBUG Processing 25/25 atomic regions from SNP 7274 to 7877 for chr2 (subchromosome 2 of 2). 2025-01-31 09:48:24,385 DEBUG Processing 336/850 atomic regions from SNP 100659 to 101259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,405 DEBUG Unique SNPs positions in subchromosome 2: 7878 2025-01-31 09:48:24,416 DEBUG Subchromosome time: 8.105033080093563, subchromosome SNPs: 7878 2025-01-31 09:48:24,416 DEBUG Estimated BADs: [2.49, 0.42, 2.49, 0.83, 4.99, 1.25, 7.48, 0.42, 4.99, 0.42, 2.49, 0.42, 1.25, 0.50, 4.99, 1.25, 0.62, 2.49, 0.50, 1.25, 9.98, 0.28, 2.49, 4.99, 0.31, 2.49, 0.83, 4.99, 1.25, 4.99, 0.42, 2.49, 4.99, 1.25, 2.49, 7.48, 2.49, 0.83, 7.48, 2.49, 24.95, 2.49, 2.49, 12.47] SNP counts: [7927, 3001, 9630, 5813, 3224, 8599, 21511, 1139, 4213, 8411, 2406, 3887, 9622, 6181, 743, 9295, 8971, 24046, 2653, 3562, 1224, 6597, 1920, 7106, 9877, 12330, 7237, 1151, 10470, 7826, 2095, 5710, 12900, 27289, 3912, 12604, 5693, 2309, 9700, 9260, 129, 3708, 3698, 4180] SNP IDs counts: [7927, 3001, 9630, 5813, 3224, 8599, 21511, 1139, 4213, 8411, 2406, 3887, 9622, 6181, 743, 9295, 8971, 24046, 2653, 3562, 1224, 6597, 1920, 7106, 9877, 12330, 7237, 1151, 10470, 7826, 2095, 5710, 12900, 27289, 3912, 12604, 5693, 2309, 9700, 9260, 129, 3708, 3698, 4180] Critical gap: 727913bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.36Mbp, 9.19Mbp, 14.61Mbp, 18.02Mbp, 19.81Mbp, 24.92Mbp, 36.25Mbp, 36.99Mbp, 39.31Mbp, 44.31Mbp, 45.60Mbp, 47.94Mbp, 53.22Mbp, 57.11Mbp, 57.52Mbp, 62.68Mbp, 67.87Mbp, 80.80Mbp, 82.42Mbp, 84.65Mbp, 85.32Mbp, 89.52Mbp, 90.85Mbp, 94.56Mbp, 101.19Mbp, 107.89Mbp, 112.24Mbp, 112.87Mbp, 118.65Mbp, 122.84Mbp, 124.10Mbp, 127.21Mbp, 134.14Mbp, 149.35Mbp, 151.88Mbp, 158.59Mbp, 161.67Mbp, 162.93Mbp, 168.08Mbp, 173.00Mbp, 173.06Mbp, 175.18Mbp[1.52Mbp], 179.79Mbp, 182.11Mbp] 2025-01-31 09:48:24,416 DEBUG chr2 time: 8.105733611038886 s 2025-01-31 09:48:24,593 DEBUG chr2: Fitting background model for 44 segments 2025-01-31 09:48:24,623 DEBUG Processing 337/850 atomic regions from SNP 100959 to 101559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,867 DEBUG Processing 338/850 atomic regions from SNP 101259 to 101859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,896 DEBUG chr7 total SNP count: 231221 2025-01-31 09:48:24,896 DEBUG chr7 length: 145441459 2025-01-31 09:48:24,896 DEBUG ----------------------------------------- 2025-01-31 09:48:24,896 INFO Processing SNPs in chr7 2025-01-31 09:48:25,112 DEBUG Processing 339/850 atomic regions from SNP 101559 to 102159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,265 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20665), (20665, 20698), (20698, 231221)] 2025-01-31 09:48:25,355 DEBUG Processing 340/850 atomic regions from SNP 101859 to 102459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,371 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:25,593 DEBUG Processing 341/850 atomic regions from SNP 102159 to 102759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,834 DEBUG Processing 342/850 atomic regions from SNP 102459 to 103059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,075 DEBUG Processing 343/850 atomic regions from SNP 102759 to 103359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,308 DEBUG Processing 344/850 atomic regions from SNP 103059 to 103659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,539 DEBUG Processing 345/850 atomic regions from SNP 103359 to 103959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,777 DEBUG Processing 346/850 atomic regions from SNP 103659 to 104259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,013 DEBUG Processing 347/850 atomic regions from SNP 103959 to 104559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,248 DEBUG Processing 348/850 atomic regions from SNP 104259 to 104859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,488 DEBUG Processing 349/850 atomic regions from SNP 104559 to 105159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,728 DEBUG Processing 350/850 atomic regions from SNP 104859 to 105459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,838 DEBUG Segmenting atomic regions: 2025-01-31 09:48:27,946 DEBUG Processing 1/67 atomic regions from SNP 0 to 604 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:27,975 DEBUG Processing 351/850 atomic regions from SNP 105159 to 105759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,185 DEBUG Processing 2/67 atomic regions from SNP 304 to 908 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,226 DEBUG Processing 352/850 atomic regions from SNP 105459 to 106059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,420 DEBUG Processing 3/67 atomic regions from SNP 608 to 1212 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,476 DEBUG Processing 353/850 atomic regions from SNP 105759 to 106359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,681 DEBUG Processing 4/67 atomic regions from SNP 912 to 1516 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,718 DEBUG Processing 354/850 atomic regions from SNP 106059 to 106659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,926 DEBUG Processing 5/67 atomic regions from SNP 1216 to 1820 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:28,956 DEBUG Processing 355/850 atomic regions from SNP 106359 to 106959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,192 DEBUG Processing 6/67 atomic regions from SNP 1520 to 2124 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,202 DEBUG Processing 356/850 atomic regions from SNP 106659 to 107259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,443 DEBUG Processing 7/67 atomic regions from SNP 1824 to 2428 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,453 DEBUG Processing 357/850 atomic regions from SNP 106959 to 107559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,703 DEBUG Processing 358/850 atomic regions from SNP 107259 to 107859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,716 DEBUG Processing 8/67 atomic regions from SNP 2128 to 2732 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:29,948 DEBUG Processing 359/850 atomic regions from SNP 107559 to 108159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,990 DEBUG Processing 9/67 atomic regions from SNP 2432 to 3036 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,184 DEBUG Processing 360/850 atomic regions from SNP 107859 to 108459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,261 DEBUG Processing 10/67 atomic regions from SNP 2736 to 3340 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,425 DEBUG Processing 361/850 atomic regions from SNP 108159 to 108759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,530 DEBUG Processing 11/67 atomic regions from SNP 3040 to 3644 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,670 DEBUG Processing 362/850 atomic regions from SNP 108459 to 109059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,766 DEBUG Processing 12/67 atomic regions from SNP 3344 to 3948 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:30,917 DEBUG Processing 363/850 atomic regions from SNP 108759 to 109359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,999 DEBUG Processing 13/67 atomic regions from SNP 3648 to 4252 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,159 DEBUG Processing 364/850 atomic regions from SNP 109059 to 109659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,226 DEBUG Processing 14/67 atomic regions from SNP 3952 to 4556 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,399 DEBUG Processing 365/850 atomic regions from SNP 109359 to 109959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,458 DEBUG Processing 15/67 atomic regions from SNP 4256 to 4860 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,647 DEBUG Processing 366/850 atomic regions from SNP 109659 to 110259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,715 DEBUG Processing 16/67 atomic regions from SNP 4560 to 5164 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:31,903 DEBUG Processing 367/850 atomic regions from SNP 109959 to 110559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,987 DEBUG Processing 17/67 atomic regions from SNP 4864 to 5468 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,152 DEBUG Processing 368/850 atomic regions from SNP 110259 to 110859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,246 DEBUG Processing 18/67 atomic regions from SNP 5168 to 5772 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,395 DEBUG Processing 369/850 atomic regions from SNP 110559 to 111159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,511 DEBUG Processing 19/67 atomic regions from SNP 5472 to 6076 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,666 DEBUG Processing 370/850 atomic regions from SNP 110859 to 111459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,778 DEBUG Processing 20/67 atomic regions from SNP 5776 to 6380 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:32,927 DEBUG Processing 371/850 atomic regions from SNP 111159 to 111759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,017 DEBUG Processing 21/67 atomic regions from SNP 6080 to 6684 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,173 DEBUG Processing 372/850 atomic regions from SNP 111459 to 112059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,263 DEBUG Processing 22/67 atomic regions from SNP 6384 to 6988 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,419 DEBUG Processing 373/850 atomic regions from SNP 111759 to 112359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,508 DEBUG Processing 23/67 atomic regions from SNP 6688 to 7292 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,663 DEBUG Processing 374/850 atomic regions from SNP 112059 to 112659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,752 DEBUG Processing 24/67 atomic regions from SNP 6992 to 7596 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:33,904 DEBUG Processing 375/850 atomic regions from SNP 112359 to 112959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,999 DEBUG Processing 25/67 atomic regions from SNP 7296 to 7900 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,148 DEBUG Processing 376/850 atomic regions from SNP 112659 to 113259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,239 DEBUG Processing 26/67 atomic regions from SNP 7600 to 8204 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,390 DEBUG Processing 377/850 atomic regions from SNP 112959 to 113559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,477 DEBUG Processing 27/67 atomic regions from SNP 7904 to 8508 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,630 DEBUG Processing 378/850 atomic regions from SNP 113259 to 113859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,714 DEBUG Processing 28/67 atomic regions from SNP 8208 to 8812 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:34,874 DEBUG Processing 379/850 atomic regions from SNP 113559 to 114159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,947 DEBUG Processing 29/67 atomic regions from SNP 8512 to 9116 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,118 DEBUG Processing 380/850 atomic regions from SNP 113859 to 114459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,177 DEBUG Processing 30/67 atomic regions from SNP 8816 to 9420 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,369 DEBUG Processing 381/850 atomic regions from SNP 114159 to 114759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,407 DEBUG Processing 31/67 atomic regions from SNP 9120 to 9724 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,622 DEBUG Processing 382/850 atomic regions from SNP 114459 to 115059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,645 DEBUG Processing 32/67 atomic regions from SNP 9424 to 10028 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:35,871 DEBUG Processing 383/850 atomic regions from SNP 114759 to 115359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,884 DEBUG Processing 33/67 atomic regions from SNP 9728 to 10332 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,116 DEBUG Processing 384/850 atomic regions from SNP 115059 to 115659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,123 DEBUG Processing 34/67 atomic regions from SNP 10032 to 10636 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,366 DEBUG Processing 385/850 atomic regions from SNP 115359 to 115959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,388 DEBUG Processing 35/67 atomic regions from SNP 10336 to 10940 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,611 DEBUG Processing 386/850 atomic regions from SNP 115659 to 116259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,659 DEBUG Processing 36/67 atomic regions from SNP 10640 to 11244 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:36,855 DEBUG Processing 387/850 atomic regions from SNP 115959 to 116559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,890 DEBUG Processing 37/67 atomic regions from SNP 10944 to 11548 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,099 DEBUG Processing 388/850 atomic regions from SNP 116259 to 116859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,123 DEBUG Processing 38/67 atomic regions from SNP 11248 to 11852 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,360 DEBUG Processing 39/67 atomic regions from SNP 11552 to 12156 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,375 DEBUG Processing 389/850 atomic regions from SNP 116559 to 117159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,600 DEBUG Processing 40/67 atomic regions from SNP 11856 to 12460 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,634 DEBUG Processing 390/850 atomic regions from SNP 116859 to 117459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,842 DEBUG Processing 41/67 atomic regions from SNP 12160 to 12764 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:37,888 DEBUG Processing 391/850 atomic regions from SNP 117159 to 117759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,086 DEBUG Processing 42/67 atomic regions from SNP 12464 to 13068 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,152 DEBUG Processing 392/850 atomic regions from SNP 117459 to 118059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,320 DEBUG Processing 43/67 atomic regions from SNP 12768 to 13372 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,428 DEBUG Processing 393/850 atomic regions from SNP 117759 to 118359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,559 DEBUG Processing 44/67 atomic regions from SNP 13072 to 13676 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,694 DEBUG Processing 394/850 atomic regions from SNP 118059 to 118659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,759 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:48:38,761 DEBUG chr10: Signal quantile: 0.991. signal threshold: 16. Best RMSEA: 0.016 2025-01-31 09:48:38,799 DEBUG Processing 45/67 atomic regions from SNP 13376 to 13980 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:38,960 DEBUG Processing 395/850 atomic regions from SNP 118359 to 118959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,045 DEBUG Processing 46/67 atomic regions from SNP 13680 to 14284 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,222 DEBUG Processing 396/850 atomic regions from SNP 118659 to 119259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,314 DEBUG Processing 47/67 atomic regions from SNP 13984 to 14588 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,496 DEBUG Processing 397/850 atomic regions from SNP 118959 to 119559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,589 DEBUG Processing 48/67 atomic regions from SNP 14288 to 14892 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:39,778 DEBUG Processing 398/850 atomic regions from SNP 119259 to 119859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,863 DEBUG Processing 49/67 atomic regions from SNP 14592 to 15196 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,063 DEBUG Processing 399/850 atomic regions from SNP 119559 to 120159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,147 DEBUG Processing 50/67 atomic regions from SNP 14896 to 15500 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,356 DEBUG Processing 400/850 atomic regions from SNP 119859 to 120459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,418 DEBUG Processing 51/67 atomic regions from SNP 15200 to 15804 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,631 DEBUG Processing 401/850 atomic regions from SNP 120159 to 120759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,682 DEBUG Processing 52/67 atomic regions from SNP 15504 to 16108 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:40,888 DEBUG Processing 402/850 atomic regions from SNP 120459 to 121059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,962 DEBUG Processing 53/67 atomic regions from SNP 15808 to 16412 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,148 DEBUG Processing 403/850 atomic regions from SNP 120759 to 121359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,240 DEBUG Processing 54/67 atomic regions from SNP 16112 to 16716 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,393 DEBUG chr10 total SNP count: 223597 2025-01-31 09:48:41,393 DEBUG chr10 length: 130694993 2025-01-31 09:48:41,393 DEBUG ----------------------------------------- 2025-01-31 09:48:41,393 INFO Processing SNPs in chr10 2025-01-31 09:48:41,416 DEBUG Processing 404/850 atomic regions from SNP 121059 to 121659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,489 DEBUG Processing 55/67 atomic regions from SNP 16416 to 17020 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,536 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:48:41,537 DEBUG chr8: Signal quantile: 0.991. signal threshold: 19. Best RMSEA: 0.015 2025-01-31 09:48:41,617 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 223597)] 2025-01-31 09:48:41,669 DEBUG Processing 405/850 atomic regions from SNP 121359 to 121959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,734 DEBUG Processing 56/67 atomic regions from SNP 16720 to 17324 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:41,770 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:41,923 DEBUG Processing 406/850 atomic regions from SNP 121659 to 122259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,982 DEBUG Processing 57/67 atomic regions from SNP 17024 to 17628 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,172 DEBUG Processing 407/850 atomic regions from SNP 121959 to 122559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,232 DEBUG Processing 58/67 atomic regions from SNP 17328 to 17932 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,417 DEBUG Processing 408/850 atomic regions from SNP 122259 to 122859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,475 DEBUG Processing 59/67 atomic regions from SNP 17632 to 18236 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,661 DEBUG Processing 409/850 atomic regions from SNP 122559 to 123159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,712 DEBUG Processing 60/67 atomic regions from SNP 17936 to 18540 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:42,909 DEBUG Processing 410/850 atomic regions from SNP 122859 to 123459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,949 DEBUG Processing 61/67 atomic regions from SNP 18240 to 18844 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,159 DEBUG Processing 411/850 atomic regions from SNP 123159 to 123759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,221 DEBUG Processing 62/67 atomic regions from SNP 18544 to 19148 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,410 DEBUG Processing 412/850 atomic regions from SNP 123459 to 124059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,500 DEBUG Processing 63/67 atomic regions from SNP 18848 to 19452 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,661 DEBUG Processing 413/850 atomic regions from SNP 123759 to 124359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,779 DEBUG Processing 64/67 atomic regions from SNP 19152 to 19755 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:43,911 DEBUG Processing 414/850 atomic regions from SNP 124059 to 124659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,069 DEBUG Processing 65/67 atomic regions from SNP 19455 to 20058 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,189 DEBUG chr8 total SNP count: 219128 2025-01-31 09:48:44,189 DEBUG chr8 length: 129401213 2025-01-31 09:48:44,190 DEBUG ----------------------------------------- 2025-01-31 09:48:44,190 INFO Processing SNPs in chr8 2025-01-31 09:48:44,214 DEBUG Processing 415/850 atomic regions from SNP 124359 to 124959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,377 DEBUG Processing 66/67 atomic regions from SNP 19758 to 20361 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,410 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 219128)] 2025-01-31 09:48:44,453 DEBUG Processing 416/850 atomic regions from SNP 124659 to 125259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,562 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:44,650 DEBUG Processing 67/67 atomic regions from SNP 20061 to 20664 for chr7 (subchromosome 1 of 3). 2025-01-31 09:48:44,698 DEBUG Processing 417/850 atomic regions from SNP 124959 to 125559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,788 DEBUG Unique SNPs positions in subchromosome 1: 20665 2025-01-31 09:48:44,858 DEBUG Subchromosome time: 19.486978488974273, subchromosome SNPs: 20665 2025-01-31 09:48:44,913 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:44,947 DEBUG Processing 418/850 atomic regions from SNP 125259 to 125859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,193 DEBUG Processing 419/850 atomic regions from SNP 125559 to 126159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,441 DEBUG Processing 420/850 atomic regions from SNP 125859 to 126459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,689 DEBUG Processing 421/850 atomic regions from SNP 126159 to 126759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,941 DEBUG Processing 422/850 atomic regions from SNP 126459 to 127059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,196 DEBUG Processing 423/850 atomic regions from SNP 126759 to 127359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,448 DEBUG Processing 424/850 atomic regions from SNP 127059 to 127659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,697 DEBUG Processing 425/850 atomic regions from SNP 127359 to 127959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,946 DEBUG Processing 426/850 atomic regions from SNP 127659 to 128259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,204 DEBUG Processing 427/850 atomic regions from SNP 127959 to 128559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,459 DEBUG Processing 428/850 atomic regions from SNP 128259 to 128859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,710 DEBUG Processing 429/850 atomic regions from SNP 128559 to 129159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,965 DEBUG Processing 430/850 atomic regions from SNP 128859 to 129459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,221 DEBUG Processing 431/850 atomic regions from SNP 129159 to 129759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,469 DEBUG Processing 432/850 atomic regions from SNP 129459 to 130059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,711 DEBUG Processing 433/850 atomic regions from SNP 129759 to 130359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,951 DEBUG Processing 434/850 atomic regions from SNP 130059 to 130659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,189 DEBUG Processing 435/850 atomic regions from SNP 130359 to 130959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,433 DEBUG Processing 436/850 atomic regions from SNP 130659 to 131259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,681 DEBUG Processing 437/850 atomic regions from SNP 130959 to 131559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,924 DEBUG Processing 438/850 atomic regions from SNP 131259 to 131859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,170 DEBUG Processing 439/850 atomic regions from SNP 131559 to 132159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,421 DEBUG Processing 440/850 atomic regions from SNP 131859 to 132459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,672 DEBUG Processing 441/850 atomic regions from SNP 132159 to 132759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,923 DEBUG Processing 442/850 atomic regions from SNP 132459 to 133059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,173 DEBUG Processing 443/850 atomic regions from SNP 132759 to 133359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,429 DEBUG Processing 444/850 atomic regions from SNP 133059 to 133659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,681 DEBUG Processing 445/850 atomic regions from SNP 133359 to 133959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,931 DEBUG Processing 446/850 atomic regions from SNP 133659 to 134259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,180 DEBUG Processing 447/850 atomic regions from SNP 133959 to 134559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,435 DEBUG Processing 448/850 atomic regions from SNP 134259 to 134859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,690 DEBUG Processing 449/850 atomic regions from SNP 134559 to 135159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,952 DEBUG Processing 450/850 atomic regions from SNP 134859 to 135459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,207 DEBUG Processing 451/850 atomic regions from SNP 135159 to 135759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,458 DEBUG Processing 452/850 atomic regions from SNP 135459 to 136059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,711 DEBUG Processing 453/850 atomic regions from SNP 135759 to 136359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,964 DEBUG Processing 454/850 atomic regions from SNP 136059 to 136659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,218 DEBUG Processing 455/850 atomic regions from SNP 136359 to 136959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,478 DEBUG Processing 456/850 atomic regions from SNP 136659 to 137259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,766 DEBUG Processing 457/850 atomic regions from SNP 136959 to 137559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,032 DEBUG Processing 458/850 atomic regions from SNP 137259 to 137859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,309 DEBUG Processing 459/850 atomic regions from SNP 137559 to 138159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,590 DEBUG Processing 460/850 atomic regions from SNP 137859 to 138459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,868 DEBUG Processing 461/850 atomic regions from SNP 138159 to 138759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,151 DEBUG Processing 462/850 atomic regions from SNP 138459 to 139059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,419 DEBUG Processing 463/850 atomic regions from SNP 138759 to 139359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,688 DEBUG Processing 464/850 atomic regions from SNP 139059 to 139659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,938 DEBUG Processing 465/850 atomic regions from SNP 139359 to 139959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,184 DEBUG Processing 466/850 atomic regions from SNP 139659 to 140259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,427 DEBUG Processing 467/850 atomic regions from SNP 139959 to 140559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,670 DEBUG Processing 468/850 atomic regions from SNP 140259 to 140859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,916 DEBUG Processing 469/850 atomic regions from SNP 140559 to 141159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,164 DEBUG Processing 470/850 atomic regions from SNP 140859 to 141459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,416 DEBUG Processing 471/850 atomic regions from SNP 141159 to 141759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,677 DEBUG Processing 472/850 atomic regions from SNP 141459 to 142059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,952 DEBUG Processing 473/850 atomic regions from SNP 141759 to 142359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,226 DEBUG Processing 474/850 atomic regions from SNP 142059 to 142659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,473 DEBUG Processing 475/850 atomic regions from SNP 142359 to 142959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,727 DEBUG Processing 476/850 atomic regions from SNP 142659 to 143259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,999 DEBUG Processing 477/850 atomic regions from SNP 142959 to 143559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,262 DEBUG Processing 478/850 atomic regions from SNP 143259 to 143859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,526 DEBUG Processing 479/850 atomic regions from SNP 143559 to 144159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,806 DEBUG Processing 480/850 atomic regions from SNP 143859 to 144459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,090 DEBUG Processing 481/850 atomic regions from SNP 144159 to 144759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,362 DEBUG Processing 482/850 atomic regions from SNP 144459 to 145059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,618 DEBUG Processing 483/850 atomic regions from SNP 144759 to 145359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,877 DEBUG Processing 484/850 atomic regions from SNP 145059 to 145659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,142 DEBUG Processing 485/850 atomic regions from SNP 145359 to 145959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,396 DEBUG Processing 486/850 atomic regions from SNP 145659 to 146259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,656 DEBUG Processing 487/850 atomic regions from SNP 145959 to 146559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,932 DEBUG Processing 488/850 atomic regions from SNP 146259 to 146859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,218 DEBUG Processing 489/850 atomic regions from SNP 146559 to 147159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,493 DEBUG Processing 490/850 atomic regions from SNP 146859 to 147459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,772 DEBUG Processing 491/850 atomic regions from SNP 147159 to 147759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,038 DEBUG Processing 492/850 atomic regions from SNP 147459 to 148059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,307 DEBUG Processing 493/850 atomic regions from SNP 147759 to 148359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,563 DEBUG Processing 494/850 atomic regions from SNP 148059 to 148659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,846 DEBUG Processing 495/850 atomic regions from SNP 148359 to 148959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,130 DEBUG Processing 496/850 atomic regions from SNP 148659 to 149259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,381 DEBUG Processing 497/850 atomic regions from SNP 148959 to 149559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,659 DEBUG Processing 498/850 atomic regions from SNP 149259 to 149859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,927 DEBUG Processing 499/850 atomic regions from SNP 149559 to 150159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,203 DEBUG Processing 500/850 atomic regions from SNP 149859 to 150459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,457 DEBUG Processing 501/850 atomic regions from SNP 150159 to 150759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,712 DEBUG Processing 502/850 atomic regions from SNP 150459 to 151059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,961 DEBUG Processing 503/850 atomic regions from SNP 150759 to 151359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,221 DEBUG Processing 504/850 atomic regions from SNP 151059 to 151659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,494 DEBUG Processing 505/850 atomic regions from SNP 151359 to 151959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,775 DEBUG Processing 506/850 atomic regions from SNP 151659 to 152259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,034 DEBUG Processing 507/850 atomic regions from SNP 151959 to 152559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,308 DEBUG Processing 508/850 atomic regions from SNP 152259 to 152859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,579 DEBUG Segmenting atomic regions: 2025-01-31 09:49:08,595 DEBUG Processing 509/850 atomic regions from SNP 152559 to 153159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,677 DEBUG Processing 1/744 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:08,870 DEBUG Processing 510/850 atomic regions from SNP 152859 to 153459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,898 DEBUG Processing 2/744 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,120 DEBUG Processing 3/744 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,138 DEBUG Processing 511/850 atomic regions from SNP 153159 to 153759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,344 DEBUG Processing 4/744 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,404 DEBUG Processing 512/850 atomic regions from SNP 153459 to 154059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,569 DEBUG Processing 5/744 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,675 DEBUG Processing 513/850 atomic regions from SNP 153759 to 154359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,790 DEBUG Processing 6/744 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:09,946 DEBUG Processing 514/850 atomic regions from SNP 154059 to 154659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,011 DEBUG Processing 7/744 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,232 DEBUG Processing 515/850 atomic regions from SNP 154359 to 154959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,253 DEBUG Processing 8/744 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,387 DEBUG Segmenting atomic regions: 2025-01-31 09:49:10,489 DEBUG Processing 516/850 atomic regions from SNP 154659 to 155259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,492 DEBUG Processing 1/700 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,498 DEBUG Processing 9/744 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,723 DEBUG Processing 10/744 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,736 DEBUG Processing 2/700 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:10,744 DEBUG Processing 517/850 atomic regions from SNP 154959 to 155559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,837 DEBUG Segmenting atomic regions: 2025-01-31 09:49:10,931 DEBUG Processing 1/729 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:10,950 DEBUG Processing 11/744 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:10,983 DEBUG Processing 3/700 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,002 DEBUG Processing 518/850 atomic regions from SNP 155259 to 155859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,151 DEBUG Processing 2/729 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,177 DEBUG Processing 12/744 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,231 DEBUG Processing 4/700 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,259 DEBUG Processing 519/850 atomic regions from SNP 155559 to 156159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,391 DEBUG Processing 3/729 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,403 DEBUG Processing 13/744 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,476 DEBUG Processing 5/700 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,517 DEBUG Processing 520/850 atomic regions from SNP 155859 to 156459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,627 DEBUG Processing 14/744 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,640 DEBUG Processing 4/729 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:11,737 DEBUG Processing 6/700 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:11,767 DEBUG Processing 521/850 atomic regions from SNP 156159 to 156759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,850 DEBUG Processing 15/744 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:11,863 DEBUG Processing 5/729 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,013 DEBUG Processing 7/700 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,018 DEBUG Processing 522/850 atomic regions from SNP 156459 to 157059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,080 DEBUG Processing 16/744 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,086 DEBUG Processing 6/729 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,267 DEBUG Processing 523/850 atomic regions from SNP 156759 to 157359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,279 DEBUG Processing 8/700 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,326 DEBUG Processing 7/729 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,336 DEBUG Processing 17/744 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,525 DEBUG Processing 524/850 atomic regions from SNP 157059 to 157659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,539 DEBUG Processing 9/700 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:12,564 DEBUG Processing 18/744 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,581 DEBUG Processing 8/729 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,784 DEBUG Processing 525/850 atomic regions from SNP 157359 to 157959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,791 DEBUG Processing 19/744 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:12,809 DEBUG Processing 9/729 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:12,822 DEBUG Processing 10/700 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,021 DEBUG Processing 20/744 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,039 DEBUG Processing 10/729 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,048 DEBUG Processing 526/850 atomic regions from SNP 157659 to 158259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,102 DEBUG Processing 11/700 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,252 DEBUG Processing 21/744 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,268 DEBUG Processing 11/729 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,306 DEBUG Processing 527/850 atomic regions from SNP 157959 to 158559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,377 DEBUG Processing 12/700 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,483 DEBUG Processing 22/744 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,498 DEBUG Processing 12/729 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,560 DEBUG Processing 528/850 atomic regions from SNP 158259 to 158859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,642 DEBUG Processing 13/700 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,718 DEBUG Processing 23/744 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,733 DEBUG Processing 13/729 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:13,813 DEBUG Processing 529/850 atomic regions from SNP 158559 to 159159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,902 DEBUG Processing 14/700 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:13,947 DEBUG Processing 24/744 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:13,963 DEBUG Processing 14/729 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,053 DEBUG Processing 530/850 atomic regions from SNP 158859 to 159459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,165 DEBUG Processing 15/700 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,175 DEBUG Processing 25/744 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,190 DEBUG Processing 15/729 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,327 DEBUG Processing 531/850 atomic regions from SNP 159159 to 159759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,401 DEBUG Processing 16/700 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,413 DEBUG Processing 26/744 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,420 DEBUG Processing 16/729 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,587 DEBUG Processing 532/850 atomic regions from SNP 159459 to 160059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,634 DEBUG Processing 17/700 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,646 DEBUG Processing 17/729 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,664 DEBUG Processing 27/744 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:14,845 DEBUG Processing 533/850 atomic regions from SNP 159759 to 160359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,870 DEBUG Processing 18/729 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:14,872 DEBUG Processing 18/700 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:14,901 DEBUG Processing 28/744 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,092 DEBUG Processing 19/729 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,093 DEBUG Processing 534/850 atomic regions from SNP 160059 to 160659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,111 DEBUG Processing 19/700 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,128 DEBUG Processing 29/744 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,316 DEBUG Processing 20/729 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,342 DEBUG Processing 535/850 atomic regions from SNP 160359 to 160959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,355 DEBUG Processing 20/700 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,358 DEBUG Processing 30/744 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,547 DEBUG Processing 21/729 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,586 DEBUG Processing 31/744 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,594 DEBUG Processing 536/850 atomic regions from SNP 160659 to 161259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,598 DEBUG Processing 21/700 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,772 DEBUG Processing 22/729 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:15,809 DEBUG Processing 32/744 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:15,841 DEBUG Processing 537/850 atomic regions from SNP 160959 to 161559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,871 DEBUG Processing 22/700 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:15,998 DEBUG Processing 23/729 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,035 DEBUG Processing 33/744 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,091 DEBUG Processing 538/850 atomic regions from SNP 161259 to 161859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,148 DEBUG Processing 23/700 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,222 DEBUG Processing 24/729 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,259 DEBUG Processing 34/744 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,337 DEBUG Processing 539/850 atomic regions from SNP 161559 to 162159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,410 DEBUG Processing 24/700 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,444 DEBUG Processing 25/729 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,483 DEBUG Processing 35/744 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,589 DEBUG Processing 540/850 atomic regions from SNP 161859 to 162459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,666 DEBUG Processing 26/729 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,688 DEBUG Processing 25/700 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,709 DEBUG Processing 36/744 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:16,844 DEBUG Processing 541/850 atomic regions from SNP 162159 to 162759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,889 DEBUG Processing 27/729 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:16,931 DEBUG Processing 26/700 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:16,932 DEBUG Processing 37/744 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,092 DEBUG Processing 542/850 atomic regions from SNP 162459 to 163059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,118 DEBUG Processing 28/729 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,155 DEBUG Processing 38/744 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,167 DEBUG Processing 27/700 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,341 DEBUG Processing 543/850 atomic regions from SNP 162759 to 163359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,351 DEBUG Processing 29/729 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,387 DEBUG Processing 39/744 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,435 DEBUG Processing 28/700 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,588 DEBUG Processing 30/729 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,596 DEBUG Processing 544/850 atomic regions from SNP 163059 to 163659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,624 DEBUG Processing 40/744 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,702 DEBUG Processing 29/700 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:17,812 DEBUG Processing 31/729 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:17,829 DEBUG Subchromosome time: 435.5133294630796, subchromosome SNPs: 339273 2025-01-31 09:49:17,829 DEBUG Estimated BADs: [0.87, 5.22, 1.31, 10.45, 0.65, 7.84, 0.87, 5.22, 2.61, 0.87, 13.06, 2.61, 5.22, 1.31, 5.22, 15.67, 1.31, 2.61, 7.84, 1.31, 0.52, 2.61, 0.52, 5.22, 2.61, 0.87, 2.61, 10.45, 2.61, 0.52, 5.22, 0.52, 1.31, 5.22, 10.45, 2.61, 10.45, 5.22, 2.61, 13.06, 5.22] SNP counts: [10696, 885, 11410, 130, 23693, 320, 4196, 11078, 9026, 13039, 232, 18966, 4497, 12623, 3801, 2371, 10504, 6051, 15986, 7802, 9749, 4513, 18406, 3267, 4721, 4911, 9642, 10781, 5851, 6637, 1188, 8370, 2629, 36789, 2303, 10519, 5684, 7503, 10231, 2061, 6212] SNP IDs counts: [10696, 885, 11410, 130, 23693, 320, 4196, 11078, 9026, 13039, 232, 18966, 4497, 12623, 3801, 2371, 10504, 6051, 15986, 7802, 9749, 4513, 18406, 3267, 4721, 4911, 9642, 10781, 5851, 6637, 1188, 8370, 2629, 36789, 2303, 10519, 5684, 7503, 10231, 2061, 6212] Critical gap: 758966bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.52Mbp, 9.99Mbp, 16.62Mbp, 16.69Mbp, 30.79Mbp, 30.98Mbp, 33.46Mbp, 39.40Mbp, 44.25Mbp, 52.10Mbp, 52.22Mbp, 62.70Mbp, 65.13Mbp, 72.20Mbp, 74.25Mbp, 75.56Mbp, 81.43Mbp, 84.84Mbp, 93.85Mbp, 98.60Mbp, 104.47Mbp, 106.98Mbp, 118.29Mbp, 120.01Mbp, 122.59Mbp, 125.40Mbp, 130.69Mbp, 136.34Mbp, 139.56Mbp, 143.70Mbp, 144.41Mbp, 149.55Mbp, 151.03Mbp, 171.03Mbp, 172.29Mbp, 178.30Mbp, 181.31Mbp, 185.43Mbp, 190.87Mbp, 191.96Mbp, 195.47Mbp] 2025-01-31 09:49:17,829 DEBUG chr1 time: 435.51396715198644 s 2025-01-31 09:49:17,841 DEBUG Processing 545/850 atomic regions from SNP 163359 to 163959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,852 DEBUG Processing 41/744 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:17,962 DEBUG Processing 30/700 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,027 DEBUG chr1: Fitting background model for 41 segments 2025-01-31 09:49:18,043 DEBUG Processing 32/729 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,085 DEBUG Processing 42/744 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,112 DEBUG Processing 546/850 atomic regions from SNP 163659 to 164259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,222 DEBUG Processing 31/700 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,276 DEBUG Processing 33/729 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,325 DEBUG Processing 43/744 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,374 DEBUG Processing 547/850 atomic regions from SNP 163959 to 164559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,488 DEBUG Processing 32/700 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,506 DEBUG Processing 34/729 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,566 DEBUG Processing 44/744 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,622 DEBUG Processing 548/850 atomic regions from SNP 164259 to 164859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,729 DEBUG Processing 35/729 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:18,755 DEBUG Processing 33/700 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:18,798 DEBUG Processing 45/744 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:18,866 DEBUG Processing 549/850 atomic regions from SNP 164559 to 165159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,953 DEBUG Processing 36/729 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,018 DEBUG Processing 34/700 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,025 DEBUG Processing 46/744 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,108 DEBUG Processing 550/850 atomic regions from SNP 164859 to 165459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,175 DEBUG Processing 37/729 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,252 DEBUG Processing 47/744 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,284 DEBUG Processing 35/700 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,351 DEBUG Processing 551/850 atomic regions from SNP 165159 to 165759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,395 DEBUG Processing 38/729 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,480 DEBUG Processing 48/744 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,538 DEBUG Processing 36/700 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,599 DEBUG Processing 552/850 atomic regions from SNP 165459 to 166059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,615 DEBUG Processing 39/729 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,707 DEBUG Processing 49/744 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,770 DEBUG Processing 37/700 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:19,834 DEBUG Processing 40/729 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:19,849 DEBUG Processing 553/850 atomic regions from SNP 165759 to 166359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,931 DEBUG Processing 50/744 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:19,993 DEBUG Processing 38/700 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,056 DEBUG Processing 41/729 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,089 DEBUG Processing 554/850 atomic regions from SNP 166059 to 166659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,158 DEBUG Processing 51/744 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,221 DEBUG Processing 39/700 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,278 DEBUG Processing 42/729 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,327 DEBUG Processing 555/850 atomic regions from SNP 166359 to 166959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,390 DEBUG Processing 52/744 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,472 DEBUG Processing 40/700 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,496 DEBUG Processing 43/729 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,561 DEBUG Processing 556/850 atomic regions from SNP 166659 to 167259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,620 DEBUG Processing 53/744 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,721 DEBUG Processing 44/729 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,737 DEBUG Processing 41/700 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:20,798 DEBUG Processing 557/850 atomic regions from SNP 166959 to 167559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,843 DEBUG Processing 54/744 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:20,971 DEBUG Processing 45/729 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:20,997 DEBUG Processing 42/700 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,034 DEBUG Processing 558/850 atomic regions from SNP 167259 to 167859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,058 DEBUG Processing 55/744 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,213 DEBUG Processing 46/729 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,266 DEBUG Processing 43/700 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,278 DEBUG Processing 559/850 atomic regions from SNP 167559 to 168159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,279 DEBUG Processing 56/744 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,445 DEBUG Processing 47/729 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,523 DEBUG Processing 44/700 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,523 DEBUG Processing 57/744 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,526 DEBUG Processing 560/850 atomic regions from SNP 167859 to 168459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,687 DEBUG Processing 48/729 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,768 DEBUG Processing 561/850 atomic regions from SNP 168159 to 168759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,775 DEBUG Processing 45/700 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:21,781 DEBUG Processing 58/744 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:21,941 DEBUG Processing 49/729 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:21,998 DEBUG Processing 46/700 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,003 DEBUG Processing 562/850 atomic regions from SNP 168459 to 169059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,012 DEBUG Processing 59/744 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,182 DEBUG Processing 50/729 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,225 DEBUG Processing 47/700 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,236 DEBUG Processing 60/744 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,242 DEBUG Processing 563/850 atomic regions from SNP 168759 to 169359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,399 DEBUG Processing 51/729 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,458 DEBUG Processing 61/744 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,460 DEBUG Processing 48/700 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,491 DEBUG Processing 564/850 atomic regions from SNP 169059 to 169659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,624 DEBUG Processing 52/729 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,681 DEBUG Processing 62/744 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,697 DEBUG Processing 49/700 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,741 DEBUG Processing 565/850 atomic regions from SNP 169359 to 169959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,844 DEBUG Processing 53/729 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:22,901 DEBUG Processing 63/744 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:22,921 DEBUG Processing 50/700 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:22,980 DEBUG Processing 566/850 atomic regions from SNP 169659 to 170259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,063 DEBUG Processing 54/729 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,149 DEBUG Processing 51/700 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,156 DEBUG Processing 64/744 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,227 DEBUG Processing 567/850 atomic regions from SNP 169959 to 170559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,287 DEBUG Processing 55/729 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,382 DEBUG Processing 52/700 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,391 DEBUG Processing 65/744 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,475 DEBUG Processing 568/850 atomic regions from SNP 170259 to 170859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,520 DEBUG Processing 56/729 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,620 DEBUG Processing 66/744 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,620 DEBUG Processing 53/700 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,727 DEBUG Processing 569/850 atomic regions from SNP 170559 to 171159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,757 DEBUG Processing 57/729 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:23,851 DEBUG Processing 67/744 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:23,874 DEBUG Processing 54/700 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:23,984 DEBUG Processing 570/850 atomic regions from SNP 170859 to 171459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,015 DEBUG Processing 58/729 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,080 DEBUG Processing 68/744 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,133 DEBUG Processing 55/700 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,236 DEBUG Processing 571/850 atomic regions from SNP 171159 to 171759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,279 DEBUG Processing 59/729 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,318 DEBUG Processing 69/744 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,373 DEBUG Processing 56/700 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,479 DEBUG Processing 572/850 atomic regions from SNP 171459 to 172059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,542 DEBUG Processing 60/729 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,550 DEBUG Processing 70/744 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,598 DEBUG Processing 57/700 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,720 DEBUG Processing 573/850 atomic regions from SNP 171759 to 172359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,779 DEBUG Processing 71/744 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:24,789 DEBUG Processing 61/729 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:24,827 DEBUG Processing 58/700 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:24,970 DEBUG Processing 574/850 atomic regions from SNP 172059 to 172659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,012 DEBUG Processing 72/744 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,026 DEBUG Processing 62/729 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,057 DEBUG Processing 59/700 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,222 DEBUG Processing 575/850 atomic regions from SNP 172359 to 172959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,240 DEBUG Processing 73/744 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,269 DEBUG Processing 63/729 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,294 DEBUG Processing 60/700 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,471 DEBUG Processing 74/744 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,478 DEBUG Processing 576/850 atomic regions from SNP 172659 to 173259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,502 DEBUG Processing 64/729 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,556 DEBUG Processing 61/700 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,709 DEBUG Processing 75/744 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,736 DEBUG Processing 577/850 atomic regions from SNP 172959 to 173559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,737 DEBUG Processing 65/729 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,830 DEBUG Processing 62/700 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:25,946 DEBUG Processing 76/744 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:25,972 DEBUG Processing 66/729 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:25,990 DEBUG Processing 578/850 atomic regions from SNP 173259 to 173859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,092 DEBUG Processing 63/700 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,184 DEBUG Processing 77/744 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,203 DEBUG Processing 67/729 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,232 DEBUG Processing 579/850 atomic regions from SNP 173559 to 174159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,333 DEBUG Processing 64/700 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,416 DEBUG Processing 78/744 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,434 DEBUG Processing 68/729 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,469 DEBUG Processing 580/850 atomic regions from SNP 173859 to 174459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,559 DEBUG Processing 65/700 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,648 DEBUG Processing 79/744 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,683 DEBUG Processing 69/729 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,710 DEBUG Processing 581/850 atomic regions from SNP 174159 to 174759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,793 DEBUG Processing 66/700 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:26,880 DEBUG Processing 80/744 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:26,947 DEBUG Processing 70/729 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:26,954 DEBUG Processing 582/850 atomic regions from SNP 174459 to 175059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,029 DEBUG Processing 67/700 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,107 DEBUG Processing 81/744 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,179 DEBUG Processing 71/729 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,191 DEBUG Processing 583/850 atomic regions from SNP 174759 to 175359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,262 DEBUG Processing 68/700 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,341 DEBUG Processing 82/744 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,414 DEBUG Processing 72/729 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,438 DEBUG Processing 584/850 atomic regions from SNP 175059 to 175659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,504 DEBUG Processing 69/700 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,587 DEBUG Processing 83/744 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,657 DEBUG Processing 73/729 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,699 DEBUG Processing 585/850 atomic regions from SNP 175359 to 175959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,748 DEBUG Processing 70/700 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:27,826 DEBUG Processing 84/744 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:27,896 DEBUG Processing 74/729 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:27,948 DEBUG Processing 586/850 atomic regions from SNP 175659 to 176259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,983 DEBUG Processing 71/700 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,060 DEBUG Processing 85/744 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,135 DEBUG Processing 75/729 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,190 DEBUG Processing 587/850 atomic regions from SNP 175959 to 176559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,214 DEBUG Processing 72/700 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,285 DEBUG Processing 86/744 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,372 DEBUG Processing 76/729 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,432 DEBUG Processing 588/850 atomic regions from SNP 176259 to 176859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,444 DEBUG Processing 73/700 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,511 DEBUG Processing 87/744 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,618 DEBUG Processing 77/729 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,676 DEBUG Processing 74/700 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,677 DEBUG Processing 589/850 atomic regions from SNP 176559 to 177159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,730 DEBUG Processing 88/744 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:28,858 DEBUG Processing 78/729 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:28,907 DEBUG Processing 75/700 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:28,919 DEBUG Processing 590/850 atomic regions from SNP 176859 to 177459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,955 DEBUG Processing 89/744 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,102 DEBUG Processing 79/729 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,147 DEBUG Processing 76/700 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,173 DEBUG Processing 591/850 atomic regions from SNP 177159 to 177759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,205 DEBUG Processing 90/744 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,334 DEBUG Processing 80/729 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,387 DEBUG Processing 77/700 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,427 DEBUG Processing 592/850 atomic regions from SNP 177459 to 178059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,443 DEBUG Processing 91/744 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,559 DEBUG Processing 81/729 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,617 DEBUG Processing 78/700 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,673 DEBUG Processing 593/850 atomic regions from SNP 177759 to 178359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,680 DEBUG Processing 92/744 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,788 DEBUG Processing 82/729 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:29,878 DEBUG Processing 79/700 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:29,921 DEBUG Processing 93/744 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:29,923 DEBUG Processing 594/850 atomic regions from SNP 178059 to 178659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,022 DEBUG Processing 83/729 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,134 DEBUG Processing 80/700 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,162 DEBUG Processing 94/744 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,180 DEBUG Processing 595/850 atomic regions from SNP 178359 to 178959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,259 DEBUG Processing 84/729 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,382 DEBUG Processing 81/700 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,411 DEBUG Processing 95/744 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,440 DEBUG Processing 596/850 atomic regions from SNP 178659 to 179259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,499 DEBUG Processing 85/729 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,622 DEBUG Processing 82/700 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,659 DEBUG Processing 96/744 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,699 DEBUG Processing 597/850 atomic regions from SNP 178959 to 179559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,745 DEBUG Processing 86/729 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:30,857 DEBUG Processing 83/700 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:30,894 DEBUG Processing 97/744 atomic regions from SNP 28896 to 29496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:30,943 DEBUG Processing 598/850 atomic regions from SNP 179259 to 179859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,979 DEBUG Processing 87/729 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,083 DEBUG Processing 84/700 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,134 DEBUG Processing 98/744 atomic regions from SNP 29196 to 29796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,177 DEBUG Processing 599/850 atomic regions from SNP 179559 to 180159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,207 DEBUG Processing 88/729 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,313 DEBUG Processing 85/700 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,392 DEBUG Processing 99/744 atomic regions from SNP 29496 to 30096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,417 DEBUG Processing 600/850 atomic regions from SNP 179859 to 180459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,438 DEBUG Processing 89/729 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,533 DEBUG Processing 86/700 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,634 DEBUG Processing 100/744 atomic regions from SNP 29796 to 30396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,655 DEBUG Processing 601/850 atomic regions from SNP 180159 to 180759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,676 DEBUG Processing 90/729 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,760 DEBUG Processing 87/700 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:31,884 DEBUG Processing 101/744 atomic regions from SNP 30096 to 30696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:31,892 DEBUG Processing 602/850 atomic regions from SNP 180459 to 181059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,901 DEBUG Processing 91/729 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:31,993 DEBUG Processing 88/700 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,124 DEBUG Processing 102/744 atomic regions from SNP 30396 to 30996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,138 DEBUG Processing 603/850 atomic regions from SNP 180759 to 181359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,141 DEBUG Processing 92/729 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,230 DEBUG Processing 89/700 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,368 DEBUG Processing 103/744 atomic regions from SNP 30696 to 31296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,384 DEBUG Processing 93/729 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,385 DEBUG Processing 604/850 atomic regions from SNP 181059 to 181659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,462 DEBUG Processing 90/700 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,615 DEBUG Processing 104/744 atomic regions from SNP 30996 to 31596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,632 DEBUG Processing 94/729 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,637 DEBUG Processing 605/850 atomic regions from SNP 181359 to 181959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,698 DEBUG Processing 91/700 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:32,850 DEBUG Processing 105/744 atomic regions from SNP 31296 to 31896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:32,873 DEBUG Processing 95/729 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:32,883 DEBUG Processing 606/850 atomic regions from SNP 181659 to 182259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,937 DEBUG Processing 92/700 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,092 DEBUG Processing 106/744 atomic regions from SNP 31596 to 32196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,112 DEBUG Processing 96/729 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,123 DEBUG Processing 607/850 atomic regions from SNP 181959 to 182559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,167 DEBUG Processing 93/700 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,342 DEBUG Processing 107/744 atomic regions from SNP 31896 to 32496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,355 DEBUG Processing 97/729 atomic regions from SNP 28896 to 29497 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,370 DEBUG Processing 608/850 atomic regions from SNP 182259 to 182859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,402 DEBUG Processing 94/700 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,595 DEBUG Processing 108/744 atomic regions from SNP 32196 to 32796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,608 DEBUG Processing 98/729 atomic regions from SNP 29197 to 29798 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,630 DEBUG Processing 609/850 atomic regions from SNP 182559 to 183159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,650 DEBUG Processing 95/700 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:33,842 DEBUG Processing 109/744 atomic regions from SNP 32496 to 33096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:33,857 DEBUG Processing 99/729 atomic regions from SNP 29498 to 30099 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:33,884 DEBUG Processing 610/850 atomic regions from SNP 182859 to 183459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,895 DEBUG Processing 96/700 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,077 DEBUG Processing 110/744 atomic regions from SNP 32796 to 33396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,105 DEBUG Processing 100/729 atomic regions from SNP 29799 to 30400 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,131 DEBUG Processing 97/700 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,132 DEBUG Processing 611/850 atomic regions from SNP 183159 to 183759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,321 DEBUG Processing 111/744 atomic regions from SNP 33096 to 33696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,369 DEBUG Processing 98/700 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,379 DEBUG Processing 101/729 atomic regions from SNP 30100 to 30701 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,382 DEBUG Processing 612/850 atomic regions from SNP 183459 to 184059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,574 DEBUG Processing 112/744 atomic regions from SNP 33396 to 33996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,614 DEBUG Processing 99/700 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,639 DEBUG Processing 613/850 atomic regions from SNP 183759 to 184359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,653 DEBUG Processing 102/729 atomic regions from SNP 30401 to 31002 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:34,833 DEBUG Processing 113/744 atomic regions from SNP 33696 to 34296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,865 DEBUG Processing 100/700 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:34,902 DEBUG Processing 614/850 atomic regions from SNP 184059 to 184659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,936 DEBUG Processing 103/729 atomic regions from SNP 30702 to 31303 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,073 DEBUG Processing 114/744 atomic regions from SNP 33996 to 34596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,106 DEBUG Processing 101/700 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,157 DEBUG Processing 615/850 atomic regions from SNP 184359 to 184959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,189 DEBUG Processing 104/729 atomic regions from SNP 31003 to 31604 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,324 DEBUG Processing 115/744 atomic regions from SNP 34296 to 34896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,336 DEBUG Processing 102/700 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,408 DEBUG Processing 616/850 atomic regions from SNP 184659 to 185259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,434 DEBUG Processing 105/729 atomic regions from SNP 31304 to 31905 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,563 DEBUG Processing 116/744 atomic regions from SNP 34596 to 35196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,572 DEBUG Processing 103/700 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,656 DEBUG Processing 617/850 atomic regions from SNP 184959 to 185559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,683 DEBUG Processing 106/729 atomic regions from SNP 31605 to 32206 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:35,802 DEBUG Processing 117/744 atomic regions from SNP 34896 to 35496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,807 DEBUG Processing 104/700 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:35,908 DEBUG Processing 618/850 atomic regions from SNP 185259 to 185859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,952 DEBUG Processing 107/729 atomic regions from SNP 31906 to 32507 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,046 DEBUG Processing 118/744 atomic regions from SNP 35196 to 35796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,051 DEBUG Processing 105/700 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,158 DEBUG Processing 619/850 atomic regions from SNP 185559 to 186159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,219 DEBUG Processing 108/729 atomic regions from SNP 32207 to 32808 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,296 DEBUG Processing 106/700 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,296 DEBUG Processing 119/744 atomic regions from SNP 35496 to 36096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,407 DEBUG Processing 620/850 atomic regions from SNP 185859 to 186459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,458 DEBUG Processing 109/729 atomic regions from SNP 32508 to 33109 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,529 DEBUG Processing 107/700 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,537 DEBUG Processing 120/744 atomic regions from SNP 35796 to 36396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,660 DEBUG Processing 621/850 atomic regions from SNP 186159 to 186759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,709 DEBUG Processing 110/729 atomic regions from SNP 32809 to 33410 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:36,782 DEBUG Processing 121/744 atomic regions from SNP 36096 to 36696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,794 DEBUG Processing 108/700 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:36,904 DEBUG Processing 622/850 atomic regions from SNP 186459 to 187059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,957 DEBUG Processing 111/729 atomic regions from SNP 33110 to 33711 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,023 DEBUG Processing 122/744 atomic regions from SNP 36396 to 36996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,067 DEBUG Processing 109/700 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,151 DEBUG Processing 623/850 atomic regions from SNP 186759 to 187359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,208 DEBUG Processing 112/729 atomic regions from SNP 33411 to 34012 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,276 DEBUG Processing 123/744 atomic regions from SNP 36696 to 37296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,343 DEBUG Processing 110/700 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,402 DEBUG Processing 624/850 atomic regions from SNP 187059 to 187659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,459 DEBUG Processing 113/729 atomic regions from SNP 33712 to 34313 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,519 DEBUG Processing 124/744 atomic regions from SNP 36996 to 37596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,620 DEBUG Processing 111/700 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,655 DEBUG Processing 625/850 atomic regions from SNP 187359 to 187959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,709 DEBUG Processing 114/729 atomic regions from SNP 34013 to 34614 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:37,760 DEBUG Processing 125/744 atomic regions from SNP 37296 to 37896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,891 DEBUG Processing 112/700 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:37,898 DEBUG Processing 626/850 atomic regions from SNP 187659 to 188259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,956 DEBUG Processing 115/729 atomic regions from SNP 34314 to 34915 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,001 DEBUG Processing 126/744 atomic regions from SNP 37596 to 38196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,149 DEBUG Processing 627/850 atomic regions from SNP 187959 to 188559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,165 DEBUG Processing 113/700 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,209 DEBUG Processing 116/729 atomic regions from SNP 34615 to 35216 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,246 DEBUG Processing 127/744 atomic regions from SNP 37896 to 38496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,386 DEBUG Processing 628/850 atomic regions from SNP 188259 to 188859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,431 DEBUG Processing 114/700 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,453 DEBUG Processing 117/729 atomic regions from SNP 34916 to 35517 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,486 DEBUG Processing 128/744 atomic regions from SNP 38196 to 38796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,621 DEBUG Processing 629/850 atomic regions from SNP 188559 to 189159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,695 DEBUG Processing 115/700 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,697 DEBUG Processing 118/729 atomic regions from SNP 35217 to 35818 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,729 DEBUG Processing 129/744 atomic regions from SNP 38496 to 39096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,858 DEBUG Processing 630/850 atomic regions from SNP 188859 to 189459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,934 DEBUG Processing 119/729 atomic regions from SNP 35518 to 36119 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:38,965 DEBUG Processing 116/700 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:38,968 DEBUG Processing 130/744 atomic regions from SNP 38796 to 39396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,104 DEBUG Processing 631/850 atomic regions from SNP 189159 to 189759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,168 DEBUG Processing 120/729 atomic regions from SNP 35819 to 36420 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,202 DEBUG Processing 131/744 atomic regions from SNP 39096 to 39696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,229 DEBUG Processing 117/700 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,342 DEBUG Processing 632/850 atomic regions from SNP 189459 to 190059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,401 DEBUG Processing 121/729 atomic regions from SNP 36120 to 36721 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,431 DEBUG Processing 132/744 atomic regions from SNP 39396 to 39996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,480 DEBUG Processing 118/700 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,575 DEBUG Processing 633/850 atomic regions from SNP 189759 to 190359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,657 DEBUG Processing 122/729 atomic regions from SNP 36421 to 37022 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,662 DEBUG Processing 133/744 atomic regions from SNP 39696 to 40296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,718 DEBUG Processing 119/700 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:39,811 DEBUG Processing 634/850 atomic regions from SNP 190059 to 190659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,892 DEBUG Processing 134/744 atomic regions from SNP 39996 to 40596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,925 DEBUG Processing 123/729 atomic regions from SNP 36722 to 37323 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:39,957 DEBUG Processing 120/700 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,045 DEBUG Processing 635/850 atomic regions from SNP 190359 to 190959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,115 DEBUG Processing 135/744 atomic regions from SNP 40296 to 40896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,171 DEBUG Processing 124/729 atomic regions from SNP 37023 to 37624 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,181 DEBUG Processing 121/700 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,279 DEBUG Processing 636/850 atomic regions from SNP 190659 to 191259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,333 DEBUG Processing 136/744 atomic regions from SNP 40596 to 41196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,402 DEBUG Processing 125/729 atomic regions from SNP 37324 to 37925 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,404 DEBUG Processing 122/700 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,530 DEBUG Processing 637/850 atomic regions from SNP 190959 to 191559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,555 DEBUG Processing 137/744 atomic regions from SNP 40896 to 41496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,632 DEBUG Processing 123/700 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:40,655 DEBUG Processing 126/729 atomic regions from SNP 37625 to 38226 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,783 DEBUG Processing 138/744 atomic regions from SNP 41196 to 41796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,798 DEBUG Processing 638/850 atomic regions from SNP 191259 to 191859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,881 DEBUG Processing 127/729 atomic regions from SNP 37926 to 38527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:40,881 DEBUG Processing 124/700 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,007 DEBUG Processing 139/744 atomic regions from SNP 41496 to 42096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,064 DEBUG Processing 639/850 atomic regions from SNP 191559 to 192159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,111 DEBUG Processing 128/729 atomic regions from SNP 38227 to 38827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,134 DEBUG Processing 125/700 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,231 DEBUG Processing 140/744 atomic regions from SNP 41796 to 42396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,323 DEBUG Processing 640/850 atomic regions from SNP 191859 to 192459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,339 DEBUG Processing 129/729 atomic regions from SNP 38527 to 39127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,369 DEBUG Processing 126/700 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,466 DEBUG Processing 141/744 atomic regions from SNP 42096 to 42696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,564 DEBUG Processing 130/729 atomic regions from SNP 38827 to 39427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,599 DEBUG Processing 127/700 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,601 DEBUG Processing 641/850 atomic regions from SNP 192159 to 192759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,701 DEBUG Processing 142/744 atomic regions from SNP 42396 to 42996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,807 DEBUG Processing 131/729 atomic regions from SNP 39127 to 39727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:41,828 DEBUG Processing 128/700 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:41,875 DEBUG Processing 642/850 atomic regions from SNP 192459 to 193059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,926 DEBUG Processing 143/744 atomic regions from SNP 42696 to 43296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,059 DEBUG Processing 129/700 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,071 DEBUG Processing 132/729 atomic regions from SNP 39427 to 40027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,147 DEBUG Processing 643/850 atomic regions from SNP 192759 to 193359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,154 DEBUG Processing 144/744 atomic regions from SNP 42996 to 43596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,290 DEBUG Processing 130/700 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,329 DEBUG Processing 133/729 atomic regions from SNP 39727 to 40327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,385 DEBUG Processing 145/744 atomic regions from SNP 43296 to 43896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,399 DEBUG Processing 644/850 atomic regions from SNP 193059 to 193659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,514 DEBUG Processing 131/700 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,569 DEBUG Processing 134/729 atomic regions from SNP 40027 to 40627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,620 DEBUG Processing 146/744 atomic regions from SNP 43596 to 44196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,642 DEBUG Processing 645/850 atomic regions from SNP 193359 to 193959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,732 DEBUG Processing 132/700 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:42,802 DEBUG Processing 135/729 atomic regions from SNP 40327 to 40927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:42,859 DEBUG Processing 147/744 atomic regions from SNP 43896 to 44496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,878 DEBUG Processing 646/850 atomic regions from SNP 193659 to 194259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,957 DEBUG Processing 133/700 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,031 DEBUG Processing 136/729 atomic regions from SNP 40627 to 41227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,090 DEBUG Processing 148/744 atomic regions from SNP 44196 to 44796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,116 DEBUG Processing 647/850 atomic regions from SNP 193959 to 194559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,186 DEBUG Processing 134/700 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,257 DEBUG Processing 137/729 atomic regions from SNP 40927 to 41527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,318 DEBUG Processing 149/744 atomic regions from SNP 44496 to 45096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,356 DEBUG Processing 648/850 atomic regions from SNP 194259 to 194859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,424 DEBUG Processing 135/700 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,485 DEBUG Processing 138/729 atomic regions from SNP 41227 to 41827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,544 DEBUG Processing 150/744 atomic regions from SNP 44796 to 45396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,610 DEBUG Processing 649/850 atomic regions from SNP 194559 to 195159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,670 DEBUG Processing 136/700 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,713 DEBUG Processing 139/729 atomic regions from SNP 41527 to 42127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,773 DEBUG Processing 151/744 atomic regions from SNP 45096 to 45696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,874 DEBUG Processing 650/850 atomic regions from SNP 194859 to 195459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,907 DEBUG Processing 137/700 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:43,936 DEBUG Processing 140/729 atomic regions from SNP 41827 to 42427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:43,998 DEBUG Processing 152/744 atomic regions from SNP 45396 to 45996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,117 DEBUG Processing 651/850 atomic regions from SNP 195159 to 195759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,145 DEBUG Processing 138/700 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,162 DEBUG Processing 141/729 atomic regions from SNP 42127 to 42727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,221 DEBUG Processing 153/744 atomic regions from SNP 45696 to 46296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,360 DEBUG Processing 652/850 atomic regions from SNP 195459 to 196059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,379 DEBUG Processing 139/700 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,390 DEBUG Processing 142/729 atomic regions from SNP 42427 to 43027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,440 DEBUG Processing 154/744 atomic regions from SNP 45996 to 46596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,620 DEBUG Processing 653/850 atomic regions from SNP 195759 to 196359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,625 DEBUG Processing 143/729 atomic regions from SNP 42727 to 43327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,631 DEBUG Processing 140/700 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,667 DEBUG Processing 155/744 atomic regions from SNP 46296 to 46896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,862 DEBUG Processing 144/729 atomic regions from SNP 43027 to 43627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:44,886 DEBUG Processing 141/700 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:44,889 DEBUG Processing 654/850 atomic regions from SNP 196059 to 196659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,898 DEBUG Processing 156/744 atomic regions from SNP 46596 to 47196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,095 DEBUG Processing 145/729 atomic regions from SNP 43327 to 43927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,114 DEBUG Processing 142/700 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,128 DEBUG Processing 157/744 atomic regions from SNP 46896 to 47496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,161 DEBUG Processing 655/850 atomic regions from SNP 196359 to 196959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,327 DEBUG Processing 146/729 atomic regions from SNP 43627 to 44227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,341 DEBUG Processing 143/700 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,358 DEBUG Processing 158/744 atomic regions from SNP 47196 to 47796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,437 DEBUG Processing 656/850 atomic regions from SNP 196659 to 197259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,562 DEBUG Processing 147/729 atomic regions from SNP 43927 to 44527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,568 DEBUG Processing 144/700 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,588 DEBUG Processing 159/744 atomic regions from SNP 47496 to 48096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,695 DEBUG Processing 657/850 atomic regions from SNP 196959 to 197559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,798 DEBUG Processing 145/700 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:45,800 DEBUG Processing 148/729 atomic regions from SNP 44227 to 44827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:45,824 DEBUG Processing 160/744 atomic regions from SNP 47796 to 48396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,930 DEBUG Processing 658/850 atomic regions from SNP 197259 to 197859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,027 DEBUG Processing 146/700 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,041 DEBUG Processing 149/729 atomic regions from SNP 44527 to 45127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,058 DEBUG Processing 161/744 atomic regions from SNP 48096 to 48696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,166 DEBUG Processing 659/850 atomic regions from SNP 197559 to 198159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,253 DEBUG Processing 147/700 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,281 DEBUG Processing 150/729 atomic regions from SNP 44827 to 45427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,298 DEBUG Processing 162/744 atomic regions from SNP 48396 to 48996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,408 DEBUG Processing 660/850 atomic regions from SNP 197859 to 198459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,480 DEBUG Processing 148/700 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,518 DEBUG Processing 151/729 atomic regions from SNP 45127 to 45727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,537 DEBUG Processing 163/744 atomic regions from SNP 48696 to 49296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,649 DEBUG Processing 661/850 atomic regions from SNP 198159 to 198759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,708 DEBUG Processing 149/700 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,756 DEBUG Processing 152/729 atomic regions from SNP 45427 to 46027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:46,773 DEBUG Processing 164/744 atomic regions from SNP 48996 to 49596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,886 DEBUG Processing 662/850 atomic regions from SNP 198459 to 199059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,933 DEBUG Processing 150/700 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:46,994 DEBUG Processing 153/729 atomic regions from SNP 45727 to 46327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,008 DEBUG Processing 165/744 atomic regions from SNP 49296 to 49896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,124 DEBUG Processing 663/850 atomic regions from SNP 198759 to 199359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,156 DEBUG Processing 151/700 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,233 DEBUG Processing 154/729 atomic regions from SNP 46027 to 46627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,247 DEBUG Processing 166/744 atomic regions from SNP 49596 to 50196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,363 DEBUG Processing 664/850 atomic regions from SNP 199059 to 199659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,377 DEBUG Processing 152/700 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,467 DEBUG Processing 155/729 atomic regions from SNP 46327 to 46927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,482 DEBUG Processing 167/744 atomic regions from SNP 49896 to 50496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,605 DEBUG Processing 665/850 atomic regions from SNP 199359 to 199959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,606 DEBUG Processing 153/700 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,698 DEBUG Processing 156/729 atomic regions from SNP 46627 to 47227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,715 DEBUG Processing 168/744 atomic regions from SNP 50196 to 50796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,834 DEBUG Processing 154/700 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:47,846 DEBUG Processing 666/850 atomic regions from SNP 199659 to 200259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,936 DEBUG Processing 157/729 atomic regions from SNP 46927 to 47527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,955 DEBUG Processing 169/744 atomic regions from SNP 50496 to 51096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,060 DEBUG Processing 155/700 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,107 DEBUG Processing 667/850 atomic regions from SNP 199959 to 200559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,167 DEBUG Processing 158/729 atomic regions from SNP 47227 to 47827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,184 DEBUG Processing 170/744 atomic regions from SNP 50796 to 51396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,287 DEBUG Processing 156/700 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,380 DEBUG Processing 668/850 atomic regions from SNP 200259 to 200859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,394 DEBUG Processing 159/729 atomic regions from SNP 47527 to 48127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,409 DEBUG Processing 171/744 atomic regions from SNP 51096 to 51696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,516 DEBUG Processing 157/700 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,619 DEBUG Processing 160/729 atomic regions from SNP 47827 to 48427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,630 DEBUG Processing 172/744 atomic regions from SNP 51396 to 51996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,634 DEBUG Processing 669/850 atomic regions from SNP 200559 to 201159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,741 DEBUG Processing 158/700 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:48,844 DEBUG Processing 161/729 atomic regions from SNP 48127 to 48727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,849 DEBUG Processing 173/744 atomic regions from SNP 51696 to 52296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,880 DEBUG Processing 670/850 atomic regions from SNP 200859 to 201459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,960 DEBUG Processing 159/700 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,072 DEBUG Processing 162/729 atomic regions from SNP 48427 to 49027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,077 DEBUG Processing 174/744 atomic regions from SNP 51996 to 52596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,120 DEBUG Processing 671/850 atomic regions from SNP 201159 to 201759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,184 DEBUG Processing 160/700 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,308 DEBUG Processing 163/729 atomic regions from SNP 48727 to 49327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,311 DEBUG Processing 175/744 atomic regions from SNP 52296 to 52896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,362 DEBUG Processing 672/850 atomic regions from SNP 201459 to 202059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,407 DEBUG Processing 161/700 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,545 DEBUG Processing 164/729 atomic regions from SNP 49027 to 49627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,548 DEBUG Processing 176/744 atomic regions from SNP 52596 to 53196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,604 DEBUG Processing 673/850 atomic regions from SNP 201759 to 202359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,632 DEBUG Processing 162/700 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:49,775 DEBUG Processing 165/729 atomic regions from SNP 49327 to 49927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,778 DEBUG Processing 177/744 atomic regions from SNP 52896 to 53496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,845 DEBUG Processing 674/850 atomic regions from SNP 202059 to 202659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,856 DEBUG Processing 163/700 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,003 DEBUG Processing 166/729 atomic regions from SNP 49627 to 50227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,005 DEBUG Processing 178/744 atomic regions from SNP 53196 to 53796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,084 DEBUG Processing 164/700 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,093 DEBUG Processing 675/850 atomic regions from SNP 202359 to 202959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,231 DEBUG Processing 167/729 atomic regions from SNP 49927 to 50527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,233 DEBUG Processing 179/744 atomic regions from SNP 53496 to 54096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,313 DEBUG Processing 165/700 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,362 DEBUG Processing 676/850 atomic regions from SNP 202659 to 203259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,455 DEBUG Processing 168/729 atomic regions from SNP 50227 to 50827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,457 DEBUG Processing 180/744 atomic regions from SNP 53796 to 54396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,541 DEBUG Processing 166/700 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,640 DEBUG Processing 677/850 atomic regions from SNP 202959 to 203559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,676 DEBUG Processing 181/744 atomic regions from SNP 54096 to 54696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,703 DEBUG Processing 169/729 atomic regions from SNP 50527 to 51127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,770 DEBUG Processing 167/700 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:50,891 DEBUG Processing 182/744 atomic regions from SNP 54396 to 54996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,907 DEBUG Processing 678/850 atomic regions from SNP 203259 to 203859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,936 DEBUG Processing 170/729 atomic regions from SNP 50827 to 51427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,998 DEBUG Processing 168/700 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,102 DEBUG Processing 183/744 atomic regions from SNP 54696 to 55296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,132 DEBUG Processing 679/850 atomic regions from SNP 203559 to 204159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,170 DEBUG Processing 171/729 atomic regions from SNP 51127 to 51727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,225 DEBUG Processing 169/700 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,326 DEBUG Processing 184/744 atomic regions from SNP 54996 to 55596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,364 DEBUG Processing 680/850 atomic regions from SNP 203859 to 204459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,413 DEBUG Processing 172/729 atomic regions from SNP 51427 to 52027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,447 DEBUG Processing 170/700 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,552 DEBUG Processing 185/744 atomic regions from SNP 55296 to 55896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,615 DEBUG Processing 681/850 atomic regions from SNP 204159 to 204759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,632 DEBUG Processing 173/729 atomic regions from SNP 51727 to 52327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,660 DEBUG Processing 171/700 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,771 DEBUG Processing 186/744 atomic regions from SNP 55596 to 56196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,850 DEBUG Processing 174/729 atomic regions from SNP 52027 to 52627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,874 DEBUG Processing 172/700 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:51,880 DEBUG Processing 682/850 atomic regions from SNP 204459 to 205059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,994 DEBUG Processing 187/744 atomic regions from SNP 55896 to 56496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,066 DEBUG Processing 175/729 atomic regions from SNP 52327 to 52927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,091 DEBUG Processing 173/700 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,140 DEBUG Processing 683/850 atomic regions from SNP 204759 to 205359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,218 DEBUG Processing 188/744 atomic regions from SNP 56196 to 56796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,295 DEBUG Processing 176/729 atomic regions from SNP 52627 to 53227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,326 DEBUG Processing 174/700 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,415 DEBUG Processing 684/850 atomic regions from SNP 205059 to 205659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,444 DEBUG Processing 189/744 atomic regions from SNP 56496 to 57096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,526 DEBUG Processing 177/729 atomic regions from SNP 52927 to 53527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,555 DEBUG Processing 175/700 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,665 DEBUG Processing 190/744 atomic regions from SNP 56796 to 57396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,691 DEBUG Processing 685/850 atomic regions from SNP 205359 to 205959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,761 DEBUG Processing 178/729 atomic regions from SNP 53227 to 53827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,783 DEBUG Processing 176/700 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:52,880 DEBUG Processing 191/744 atomic regions from SNP 57096 to 57696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,960 DEBUG Processing 686/850 atomic regions from SNP 205659 to 206259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,995 DEBUG Processing 179/729 atomic regions from SNP 53527 to 54127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,010 DEBUG Processing 177/700 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,095 DEBUG Processing 192/744 atomic regions from SNP 57396 to 57996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,220 DEBUG Processing 180/729 atomic regions from SNP 53827 to 54427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,229 DEBUG Processing 687/850 atomic regions from SNP 205959 to 206559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,232 DEBUG Processing 178/700 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,309 DEBUG Processing 193/744 atomic regions from SNP 57696 to 58296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,448 DEBUG Processing 179/700 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,456 DEBUG Processing 181/729 atomic regions from SNP 54127 to 54727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,487 DEBUG Processing 688/850 atomic regions from SNP 206259 to 206859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,527 DEBUG Processing 194/744 atomic regions from SNP 57996 to 58596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,664 DEBUG Processing 180/700 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,678 DEBUG Processing 182/729 atomic regions from SNP 54427 to 55027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,740 DEBUG Processing 689/850 atomic regions from SNP 206559 to 207159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,749 DEBUG Processing 195/744 atomic regions from SNP 58296 to 58896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,881 DEBUG Processing 181/700 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:53,897 DEBUG Processing 183/729 atomic regions from SNP 54727 to 55327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,977 DEBUG Processing 690/850 atomic regions from SNP 206859 to 207459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,978 DEBUG Processing 196/744 atomic regions from SNP 58596 to 59196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,093 DEBUG Processing 182/700 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,110 DEBUG Processing 184/729 atomic regions from SNP 55027 to 55627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,203 DEBUG Processing 197/744 atomic regions from SNP 58896 to 59496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,215 DEBUG Processing 691/850 atomic regions from SNP 207159 to 207759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,305 DEBUG Processing 183/700 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,350 DEBUG Processing 185/729 atomic regions from SNP 55327 to 55927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,427 DEBUG Processing 198/744 atomic regions from SNP 59196 to 59796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,452 DEBUG Processing 692/850 atomic regions from SNP 207459 to 208059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,530 DEBUG Processing 184/700 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,587 DEBUG Processing 186/729 atomic regions from SNP 55627 to 56227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,648 DEBUG Processing 199/744 atomic regions from SNP 59496 to 60096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,682 DEBUG Processing 693/850 atomic regions from SNP 207759 to 208359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,757 DEBUG Processing 185/700 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:54,811 DEBUG Processing 187/729 atomic regions from SNP 55927 to 56527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,864 DEBUG Processing 200/744 atomic regions from SNP 59796 to 60396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,912 DEBUG Processing 694/850 atomic regions from SNP 208059 to 208659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,981 DEBUG Processing 186/700 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,038 DEBUG Processing 188/729 atomic regions from SNP 56227 to 56827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,083 DEBUG Processing 201/744 atomic regions from SNP 60096 to 60696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,159 DEBUG Processing 695/850 atomic regions from SNP 208359 to 208959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,211 DEBUG Processing 187/700 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,273 DEBUG Processing 189/729 atomic regions from SNP 56527 to 57127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,310 DEBUG Processing 202/744 atomic regions from SNP 60396 to 60996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,416 DEBUG Processing 696/850 atomic regions from SNP 208659 to 209259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,438 DEBUG Processing 188/700 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,504 DEBUG Processing 190/729 atomic regions from SNP 56827 to 57427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,534 DEBUG Processing 203/744 atomic regions from SNP 60696 to 61296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,666 DEBUG Processing 189/700 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,675 DEBUG Processing 697/850 atomic regions from SNP 208959 to 209559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,739 DEBUG Processing 191/729 atomic regions from SNP 57127 to 57727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,761 DEBUG Processing 204/744 atomic regions from SNP 60996 to 61596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,898 DEBUG Processing 190/700 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:55,949 DEBUG Processing 698/850 atomic regions from SNP 209259 to 209859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,977 DEBUG Processing 192/729 atomic regions from SNP 57427 to 58027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,991 DEBUG Processing 205/744 atomic regions from SNP 61296 to 61896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,130 DEBUG Processing 191/700 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,201 DEBUG Processing 699/850 atomic regions from SNP 209559 to 210159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,217 DEBUG Processing 193/729 atomic regions from SNP 57727 to 58327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,226 DEBUG Processing 206/744 atomic regions from SNP 61596 to 62196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,354 DEBUG Processing 192/700 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,451 DEBUG Processing 700/850 atomic regions from SNP 209859 to 210459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,454 DEBUG Processing 194/729 atomic regions from SNP 58027 to 58627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,464 DEBUG Processing 207/744 atomic regions from SNP 61896 to 62496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,576 DEBUG Processing 193/700 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,694 DEBUG Processing 195/729 atomic regions from SNP 58327 to 58927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,702 DEBUG Processing 701/850 atomic regions from SNP 210159 to 210759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,703 DEBUG Processing 208/744 atomic regions from SNP 62196 to 62796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,800 DEBUG Processing 194/700 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:56,938 DEBUG Processing 196/729 atomic regions from SNP 58627 to 59227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,946 DEBUG Processing 209/744 atomic regions from SNP 62496 to 63096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,947 DEBUG Processing 702/850 atomic regions from SNP 210459 to 211059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,027 DEBUG Processing 195/700 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,183 DEBUG Processing 197/729 atomic regions from SNP 58927 to 59527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,185 DEBUG Processing 210/744 atomic regions from SNP 62796 to 63396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,190 DEBUG Processing 703/850 atomic regions from SNP 210759 to 211359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,254 DEBUG Processing 196/700 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,418 DEBUG Processing 198/729 atomic regions from SNP 59227 to 59827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,418 DEBUG Processing 211/744 atomic regions from SNP 63096 to 63696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,434 DEBUG Processing 704/850 atomic regions from SNP 211059 to 211659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,487 DEBUG Processing 197/700 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,656 DEBUG Processing 212/744 atomic regions from SNP 63396 to 63996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,658 DEBUG Processing 199/729 atomic regions from SNP 59527 to 60127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,705 DEBUG Processing 705/850 atomic regions from SNP 211359 to 211959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,721 DEBUG Processing 198/700 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,899 DEBUG Processing 200/729 atomic regions from SNP 59827 to 60427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,902 DEBUG Processing 213/744 atomic regions from SNP 63696 to 64296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,958 DEBUG Processing 199/700 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:57,973 DEBUG Processing 706/850 atomic regions from SNP 211659 to 212259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,137 DEBUG Processing 201/729 atomic regions from SNP 60127 to 60727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,140 DEBUG Processing 214/744 atomic regions from SNP 63996 to 64596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,190 DEBUG Processing 200/700 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,257 DEBUG Processing 707/850 atomic regions from SNP 211959 to 212559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,372 DEBUG Processing 215/744 atomic regions from SNP 64296 to 64896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,373 DEBUG Processing 202/729 atomic regions from SNP 60427 to 61027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,418 DEBUG Processing 201/700 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,547 DEBUG Processing 708/850 atomic regions from SNP 212259 to 212859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,609 DEBUG Processing 203/729 atomic regions from SNP 60727 to 61327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,637 DEBUG Processing 216/744 atomic regions from SNP 64596 to 65196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,646 DEBUG Processing 202/700 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,829 DEBUG Processing 709/850 atomic regions from SNP 212559 to 213159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,841 DEBUG Processing 204/729 atomic regions from SNP 61027 to 61627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,869 DEBUG Processing 203/700 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:58,904 DEBUG Processing 217/744 atomic regions from SNP 64896 to 65496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,065 DEBUG Processing 205/729 atomic regions from SNP 61327 to 61927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,095 DEBUG Processing 710/850 atomic regions from SNP 212859 to 213459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,096 DEBUG Processing 204/700 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,151 DEBUG Processing 218/744 atomic regions from SNP 65196 to 65796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,292 DEBUG Processing 206/729 atomic regions from SNP 61627 to 62227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,330 DEBUG Processing 205/700 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,371 DEBUG Processing 711/850 atomic regions from SNP 213159 to 213759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,374 DEBUG Processing 219/744 atomic regions from SNP 65496 to 66096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,526 DEBUG Processing 207/729 atomic regions from SNP 61927 to 62527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,564 DEBUG Processing 206/700 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,606 DEBUG Processing 220/744 atomic regions from SNP 65796 to 66396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,647 DEBUG Processing 712/850 atomic regions from SNP 213459 to 214059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,757 DEBUG Processing 208/729 atomic regions from SNP 62227 to 62827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,797 DEBUG Processing 207/700 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:49:59,840 DEBUG Processing 221/744 atomic regions from SNP 66096 to 66696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,895 DEBUG Processing 713/850 atomic regions from SNP 213759 to 214359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,988 DEBUG Processing 209/729 atomic regions from SNP 62527 to 63127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,031 DEBUG Processing 208/700 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,070 DEBUG Processing 222/744 atomic regions from SNP 66396 to 66996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,142 DEBUG Processing 714/850 atomic regions from SNP 214059 to 214659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,225 DEBUG Processing 210/729 atomic regions from SNP 62827 to 63427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,262 DEBUG Processing 209/700 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,303 DEBUG Processing 223/744 atomic regions from SNP 66696 to 67296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,387 DEBUG Processing 715/850 atomic regions from SNP 214359 to 214959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,461 DEBUG Processing 211/729 atomic regions from SNP 63127 to 63727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,491 DEBUG Processing 210/700 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,557 DEBUG Processing 224/744 atomic regions from SNP 66996 to 67596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,632 DEBUG Processing 716/850 atomic regions from SNP 214659 to 215259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,699 DEBUG Processing 212/729 atomic regions from SNP 63427 to 64027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,715 DEBUG Processing 211/700 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:00,809 DEBUG Processing 225/744 atomic regions from SNP 67296 to 67896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,876 DEBUG Processing 717/850 atomic regions from SNP 214959 to 215559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,956 DEBUG Processing 213/729 atomic regions from SNP 63727 to 64327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,992 DEBUG Processing 212/700 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,163 DEBUG Processing 226/744 atomic regions from SNP 67596 to 68196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,170 DEBUG Processing 718/850 atomic regions from SNP 215259 to 215859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,185 DEBUG Processing 214/729 atomic regions from SNP 64027 to 64627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,204 DEBUG Processing 213/700 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,404 DEBUG Processing 719/850 atomic regions from SNP 215559 to 216159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,409 DEBUG Processing 227/744 atomic regions from SNP 67896 to 68496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,416 DEBUG Processing 215/729 atomic regions from SNP 64327 to 64927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,441 DEBUG Processing 214/700 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,649 DEBUG Processing 720/850 atomic regions from SNP 215859 to 216459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,653 DEBUG Processing 216/729 atomic regions from SNP 64627 to 65227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,661 DEBUG Processing 228/744 atomic regions from SNP 68196 to 68796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,693 DEBUG Processing 215/700 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,887 DEBUG Processing 217/729 atomic regions from SNP 64927 to 65527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,890 DEBUG Processing 721/850 atomic regions from SNP 216159 to 216759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,919 DEBUG Processing 229/744 atomic regions from SNP 68496 to 69096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,920 DEBUG Processing 216/700 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,123 DEBUG Processing 722/850 atomic regions from SNP 216459 to 217059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,125 DEBUG Processing 218/729 atomic regions from SNP 65227 to 65827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,140 DEBUG Processing 217/700 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,181 DEBUG Processing 230/744 atomic regions from SNP 68796 to 69396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,360 DEBUG Processing 219/729 atomic regions from SNP 65527 to 66127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,363 DEBUG Processing 218/700 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,367 DEBUG Processing 723/850 atomic regions from SNP 216759 to 217359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,450 DEBUG Processing 231/744 atomic regions from SNP 69096 to 69696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,583 DEBUG Processing 219/700 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,584 DEBUG Processing 220/729 atomic regions from SNP 65827 to 66427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,618 DEBUG Processing 724/850 atomic regions from SNP 217059 to 217659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,708 DEBUG Processing 232/744 atomic regions from SNP 69396 to 69996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,801 DEBUG Processing 220/700 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,811 DEBUG Processing 221/729 atomic regions from SNP 66127 to 66727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,871 DEBUG Processing 725/850 atomic regions from SNP 217359 to 217959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,943 DEBUG Processing 233/744 atomic regions from SNP 69696 to 70296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,021 DEBUG Processing 221/700 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,048 DEBUG Processing 222/729 atomic regions from SNP 66427 to 67027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,106 DEBUG Processing 726/850 atomic regions from SNP 217659 to 218259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,175 DEBUG Processing 234/744 atomic regions from SNP 69996 to 70596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,241 DEBUG Processing 222/700 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,285 DEBUG Processing 223/729 atomic regions from SNP 66727 to 67327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,355 DEBUG Processing 727/850 atomic regions from SNP 217959 to 218559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,404 DEBUG Processing 235/744 atomic regions from SNP 70296 to 70896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,456 DEBUG Processing 223/700 atomic regions from SNP 66822 to 67422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,515 DEBUG Processing 224/729 atomic regions from SNP 67027 to 67627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,605 DEBUG Processing 728/850 atomic regions from SNP 218259 to 218859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,638 DEBUG Processing 236/744 atomic regions from SNP 70596 to 71196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,682 DEBUG Processing 224/700 atomic regions from SNP 67122 to 67722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,743 DEBUG Processing 225/729 atomic regions from SNP 67327 to 67927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,855 DEBUG Processing 729/850 atomic regions from SNP 218559 to 219159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,907 DEBUG Processing 237/744 atomic regions from SNP 70896 to 71496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,909 DEBUG Processing 225/700 atomic regions from SNP 67422 to 68022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,980 DEBUG Processing 226/729 atomic regions from SNP 67627 to 68227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,123 DEBUG Processing 730/850 atomic regions from SNP 218859 to 219459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,137 DEBUG Processing 226/700 atomic regions from SNP 67722 to 68322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,182 DEBUG Processing 238/744 atomic regions from SNP 71196 to 71796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,226 DEBUG Processing 227/729 atomic regions from SNP 67927 to 68527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,360 DEBUG Processing 731/850 atomic regions from SNP 219159 to 219759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,374 DEBUG Processing 227/700 atomic regions from SNP 68022 to 68622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,432 DEBUG Processing 239/744 atomic regions from SNP 71496 to 72096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,471 DEBUG Processing 228/729 atomic regions from SNP 68227 to 68827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,616 DEBUG Processing 228/700 atomic regions from SNP 68322 to 68922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,617 DEBUG Processing 732/850 atomic regions from SNP 219459 to 220059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,671 DEBUG Processing 240/744 atomic regions from SNP 71796 to 72396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,718 DEBUG Processing 229/729 atomic regions from SNP 68527 to 69127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,839 DEBUG Processing 229/700 atomic regions from SNP 68622 to 69222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,866 DEBUG Processing 733/850 atomic regions from SNP 219759 to 220359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,905 DEBUG Processing 241/744 atomic regions from SNP 72096 to 72696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,959 DEBUG Processing 230/729 atomic regions from SNP 68827 to 69427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,064 DEBUG Processing 230/700 atomic regions from SNP 68922 to 69522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,102 DEBUG Processing 734/850 atomic regions from SNP 220059 to 220659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,132 DEBUG Processing 242/744 atomic regions from SNP 72396 to 72996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,197 DEBUG Processing 231/729 atomic regions from SNP 69127 to 69727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,290 DEBUG Processing 231/700 atomic regions from SNP 69222 to 69822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,344 DEBUG Processing 735/850 atomic regions from SNP 220359 to 220959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,363 DEBUG Processing 243/744 atomic regions from SNP 72696 to 73296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,427 DEBUG Processing 232/729 atomic regions from SNP 69427 to 70027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,517 DEBUG Processing 232/700 atomic regions from SNP 69522 to 70122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,584 DEBUG Processing 736/850 atomic regions from SNP 220659 to 221259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,593 DEBUG Processing 244/744 atomic regions from SNP 72996 to 73596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,655 DEBUG Processing 233/729 atomic regions from SNP 69727 to 70327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,747 DEBUG Processing 233/700 atomic regions from SNP 69822 to 70422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,828 DEBUG Processing 737/850 atomic regions from SNP 220959 to 221559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,829 DEBUG Processing 245/744 atomic regions from SNP 73296 to 73896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,892 DEBUG Processing 234/729 atomic regions from SNP 70027 to 70627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,987 DEBUG Processing 234/700 atomic regions from SNP 70122 to 70722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,067 DEBUG Processing 738/850 atomic regions from SNP 221259 to 221859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,069 DEBUG Processing 246/744 atomic regions from SNP 73596 to 74196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,128 DEBUG Processing 235/729 atomic regions from SNP 70327 to 70927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,226 DEBUG Processing 235/700 atomic regions from SNP 70422 to 71022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,311 DEBUG Processing 739/850 atomic regions from SNP 221559 to 222159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,343 DEBUG Processing 247/744 atomic regions from SNP 73896 to 74496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,362 DEBUG Processing 236/729 atomic regions from SNP 70627 to 71227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,446 DEBUG Processing 236/700 atomic regions from SNP 70722 to 71322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,554 DEBUG Processing 740/850 atomic regions from SNP 221859 to 222459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,579 DEBUG Processing 248/744 atomic regions from SNP 74196 to 74796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,598 DEBUG Processing 237/729 atomic regions from SNP 70927 to 71527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,668 DEBUG Processing 237/700 atomic regions from SNP 71022 to 71622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,795 DEBUG Processing 741/850 atomic regions from SNP 222159 to 222759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,821 DEBUG Processing 249/744 atomic regions from SNP 74496 to 75096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,844 DEBUG Processing 238/729 atomic regions from SNP 71227 to 71827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,893 DEBUG Processing 238/700 atomic regions from SNP 71322 to 71922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,038 DEBUG Processing 742/850 atomic regions from SNP 222459 to 223059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,054 DEBUG Processing 250/744 atomic regions from SNP 74796 to 75396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,081 DEBUG Processing 239/729 atomic regions from SNP 71527 to 72127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,147 DEBUG Processing 239/700 atomic regions from SNP 71622 to 72222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,278 DEBUG Processing 743/850 atomic regions from SNP 222759 to 223359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,285 DEBUG Processing 251/744 atomic regions from SNP 75096 to 75696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,314 DEBUG Processing 240/729 atomic regions from SNP 71827 to 72427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,389 DEBUG Processing 240/700 atomic regions from SNP 71922 to 72522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,514 DEBUG Processing 252/744 atomic regions from SNP 75396 to 75996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,523 DEBUG Processing 744/850 atomic regions from SNP 223059 to 223659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,559 DEBUG Processing 241/729 atomic regions from SNP 72127 to 72727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,614 DEBUG Processing 241/700 atomic regions from SNP 72222 to 72822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,754 DEBUG Processing 253/744 atomic regions from SNP 75696 to 76296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,763 DEBUG Processing 745/850 atomic regions from SNP 223359 to 223959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,810 DEBUG Processing 242/729 atomic regions from SNP 72427 to 73027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,838 DEBUG Processing 242/700 atomic regions from SNP 72522 to 73122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,993 DEBUG Processing 254/744 atomic regions from SNP 75996 to 76596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,004 DEBUG Processing 746/850 atomic regions from SNP 223659 to 224259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,054 DEBUG Processing 243/729 atomic regions from SNP 72727 to 73327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,073 DEBUG Processing 243/700 atomic regions from SNP 72822 to 73422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,226 DEBUG Processing 255/744 atomic regions from SNP 76296 to 76896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,253 DEBUG Processing 747/850 atomic regions from SNP 223959 to 224559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,307 DEBUG Processing 244/700 atomic regions from SNP 73122 to 73722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,308 DEBUG Processing 244/729 atomic regions from SNP 73027 to 73627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,447 DEBUG Processing 256/744 atomic regions from SNP 76596 to 77196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,487 DEBUG Processing 748/850 atomic regions from SNP 224259 to 224859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,534 DEBUG Processing 245/700 atomic regions from SNP 73422 to 74022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,565 DEBUG Processing 245/729 atomic regions from SNP 73327 to 73927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,668 DEBUG Processing 257/744 atomic regions from SNP 76896 to 77496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,718 DEBUG Processing 749/850 atomic regions from SNP 224559 to 225159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,759 DEBUG Processing 246/700 atomic regions from SNP 73722 to 74322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,804 DEBUG Processing 246/729 atomic regions from SNP 73627 to 74227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,899 DEBUG Processing 258/744 atomic regions from SNP 77196 to 77796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,951 DEBUG Processing 750/850 atomic regions from SNP 224859 to 225459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,984 DEBUG Processing 247/700 atomic regions from SNP 74022 to 74622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,039 DEBUG Processing 247/729 atomic regions from SNP 73927 to 74527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,129 DEBUG Processing 259/744 atomic regions from SNP 77496 to 78096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,185 DEBUG Processing 751/850 atomic regions from SNP 225159 to 225759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,210 DEBUG Processing 248/700 atomic regions from SNP 74322 to 74922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,269 DEBUG Processing 248/729 atomic regions from SNP 74227 to 74827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,359 DEBUG Processing 260/744 atomic regions from SNP 77796 to 78396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,423 DEBUG Processing 752/850 atomic regions from SNP 225459 to 226059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,437 DEBUG Processing 249/700 atomic regions from SNP 74622 to 75222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,496 DEBUG Processing 249/729 atomic regions from SNP 74527 to 75127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,593 DEBUG Processing 261/744 atomic regions from SNP 78096 to 78696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,662 DEBUG Processing 753/850 atomic regions from SNP 225759 to 226359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,664 DEBUG Processing 250/700 atomic regions from SNP 74922 to 75522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,733 DEBUG Processing 250/729 atomic regions from SNP 74827 to 75427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,828 DEBUG Processing 262/744 atomic regions from SNP 78396 to 78996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,894 DEBUG Processing 251/700 atomic regions from SNP 75222 to 75822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,905 DEBUG Processing 754/850 atomic regions from SNP 226059 to 226659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,980 DEBUG Processing 251/729 atomic regions from SNP 75127 to 75727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,067 DEBUG Processing 263/744 atomic regions from SNP 78696 to 79296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,122 DEBUG Processing 252/700 atomic regions from SNP 75522 to 76122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,147 DEBUG Processing 755/850 atomic regions from SNP 226359 to 226959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,209 DEBUG Processing 252/729 atomic regions from SNP 75427 to 76027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,301 DEBUG Processing 264/744 atomic regions from SNP 78996 to 79596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,348 DEBUG Processing 253/700 atomic regions from SNP 75822 to 76422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,388 DEBUG Processing 756/850 atomic regions from SNP 226659 to 227259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,441 DEBUG Processing 253/729 atomic regions from SNP 75727 to 76327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,532 DEBUG Processing 265/744 atomic regions from SNP 79296 to 79896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,575 DEBUG Processing 254/700 atomic regions from SNP 76122 to 76722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,628 DEBUG Processing 757/850 atomic regions from SNP 226959 to 227559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,677 DEBUG Processing 254/729 atomic regions from SNP 76027 to 76627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,763 DEBUG Processing 266/744 atomic regions from SNP 79596 to 80196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,793 DEBUG Processing 255/700 atomic regions from SNP 76422 to 77022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,861 DEBUG Processing 758/850 atomic regions from SNP 227259 to 227859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,912 DEBUG Processing 255/729 atomic regions from SNP 76327 to 76927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,992 DEBUG Processing 267/744 atomic regions from SNP 79896 to 80496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,009 DEBUG Processing 256/700 atomic regions from SNP 76722 to 77322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,094 DEBUG Processing 759/850 atomic regions from SNP 227559 to 228159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,141 DEBUG Processing 256/729 atomic regions from SNP 76627 to 77227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,222 DEBUG Processing 268/744 atomic regions from SNP 80196 to 80796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,226 DEBUG Processing 257/700 atomic regions from SNP 77022 to 77622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,325 DEBUG Processing 760/850 atomic regions from SNP 227859 to 228459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,372 DEBUG Processing 257/729 atomic regions from SNP 76927 to 77527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,444 DEBUG Processing 258/700 atomic regions from SNP 77322 to 77922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,449 DEBUG Processing 269/744 atomic regions from SNP 80496 to 81096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,560 DEBUG Processing 761/850 atomic regions from SNP 228159 to 228759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,607 DEBUG Processing 258/729 atomic regions from SNP 77227 to 77827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,662 DEBUG Processing 259/700 atomic regions from SNP 77622 to 78222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,676 DEBUG Processing 270/744 atomic regions from SNP 80796 to 81396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,804 DEBUG Processing 762/850 atomic regions from SNP 228459 to 229059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,844 DEBUG Processing 259/729 atomic regions from SNP 77527 to 78127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,883 DEBUG Processing 260/700 atomic regions from SNP 77922 to 78522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,906 DEBUG Processing 271/744 atomic regions from SNP 81096 to 81696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,068 DEBUG Processing 763/850 atomic regions from SNP 228759 to 229359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,077 DEBUG Processing 260/729 atomic regions from SNP 77827 to 78427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,103 DEBUG Processing 261/700 atomic regions from SNP 78222 to 78822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,138 DEBUG Processing 272/744 atomic regions from SNP 81396 to 81996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,313 DEBUG Processing 261/729 atomic regions from SNP 78127 to 78727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,320 DEBUG Processing 764/850 atomic regions from SNP 229059 to 229659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,323 DEBUG Processing 262/700 atomic regions from SNP 78522 to 79122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,367 DEBUG Processing 273/744 atomic regions from SNP 81696 to 82296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,544 DEBUG Processing 263/700 atomic regions from SNP 78822 to 79422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,552 DEBUG Processing 262/729 atomic regions from SNP 78427 to 79027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,575 DEBUG Processing 765/850 atomic regions from SNP 229359 to 229959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,599 DEBUG Processing 274/744 atomic regions from SNP 81996 to 82596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,765 DEBUG Processing 264/700 atomic regions from SNP 79122 to 79722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,794 DEBUG Processing 263/729 atomic regions from SNP 78727 to 79327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,819 DEBUG Processing 766/850 atomic regions from SNP 229659 to 230259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,841 DEBUG Processing 275/744 atomic regions from SNP 82296 to 82896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,993 DEBUG Processing 265/700 atomic regions from SNP 79422 to 80022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,031 DEBUG Processing 264/729 atomic regions from SNP 79027 to 79627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,064 DEBUG Processing 767/850 atomic regions from SNP 229959 to 230559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,080 DEBUG Processing 276/744 atomic regions from SNP 82596 to 83196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,218 DEBUG Processing 266/700 atomic regions from SNP 79722 to 80322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,268 DEBUG Processing 265/729 atomic regions from SNP 79327 to 79927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,305 DEBUG Processing 768/850 atomic regions from SNP 230259 to 230859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,316 DEBUG Processing 277/744 atomic regions from SNP 82896 to 83496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,436 DEBUG Processing 267/700 atomic regions from SNP 80022 to 80622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,509 DEBUG Processing 266/729 atomic regions from SNP 79627 to 80227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,546 DEBUG Processing 769/850 atomic regions from SNP 230559 to 231159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,552 DEBUG Processing 278/744 atomic regions from SNP 83196 to 83796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,651 DEBUG Processing 268/700 atomic regions from SNP 80322 to 80922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,751 DEBUG Processing 267/729 atomic regions from SNP 79927 to 80527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,787 DEBUG Processing 770/850 atomic regions from SNP 230859 to 231459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,790 DEBUG Processing 279/744 atomic regions from SNP 83496 to 84096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,872 DEBUG Processing 269/700 atomic regions from SNP 80622 to 81222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,985 DEBUG Processing 268/729 atomic regions from SNP 80227 to 80827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,020 DEBUG Processing 771/850 atomic regions from SNP 231159 to 231759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,025 DEBUG Processing 280/744 atomic regions from SNP 83796 to 84396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,092 DEBUG Processing 270/700 atomic regions from SNP 80922 to 81522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,213 DEBUG Processing 269/729 atomic regions from SNP 80527 to 81127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,254 DEBUG Processing 772/850 atomic regions from SNP 231459 to 232059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,255 DEBUG Processing 281/744 atomic regions from SNP 84096 to 84696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,314 DEBUG Processing 271/700 atomic regions from SNP 81222 to 81822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,443 DEBUG Processing 270/729 atomic regions from SNP 80827 to 81427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,484 DEBUG Processing 282/744 atomic regions from SNP 84396 to 84996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,505 DEBUG Processing 773/850 atomic regions from SNP 231759 to 232359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,543 DEBUG Processing 272/700 atomic regions from SNP 81522 to 82122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,667 DEBUG Processing 271/729 atomic regions from SNP 81127 to 81727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,709 DEBUG Processing 283/744 atomic regions from SNP 84696 to 85296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,750 DEBUG Processing 774/850 atomic regions from SNP 232059 to 232659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,791 DEBUG Processing 273/700 atomic regions from SNP 81822 to 82422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,896 DEBUG Processing 272/729 atomic regions from SNP 81427 to 82027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,933 DEBUG Processing 284/744 atomic regions from SNP 84996 to 85596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,008 DEBUG Processing 775/850 atomic regions from SNP 232359 to 232959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,017 DEBUG Processing 274/700 atomic regions from SNP 82122 to 82722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,135 DEBUG Processing 273/729 atomic regions from SNP 81727 to 82327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,164 DEBUG Processing 285/744 atomic regions from SNP 85296 to 85896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,235 DEBUG Processing 275/700 atomic regions from SNP 82422 to 83022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,245 DEBUG Processing 776/850 atomic regions from SNP 232659 to 233259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,376 DEBUG Processing 274/729 atomic regions from SNP 82027 to 82627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,402 DEBUG Processing 286/744 atomic regions from SNP 85596 to 86196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,455 DEBUG Processing 276/700 atomic regions from SNP 82722 to 83322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,479 DEBUG Processing 777/850 atomic regions from SNP 232959 to 233559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,610 DEBUG Processing 275/729 atomic regions from SNP 82327 to 82927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,638 DEBUG Processing 287/744 atomic regions from SNP 85896 to 86496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,678 DEBUG Processing 277/700 atomic regions from SNP 83022 to 83622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,716 DEBUG Processing 778/850 atomic regions from SNP 233259 to 233859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,833 DEBUG Processing 276/729 atomic regions from SNP 82627 to 83227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,863 DEBUG Processing 288/744 atomic regions from SNP 86196 to 86796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,900 DEBUG Processing 278/700 atomic regions from SNP 83322 to 83922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,956 DEBUG Processing 779/850 atomic regions from SNP 233559 to 234159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,062 DEBUG Processing 277/729 atomic regions from SNP 82927 to 83527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,090 DEBUG Processing 289/744 atomic regions from SNP 86496 to 87096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,122 DEBUG Processing 279/700 atomic regions from SNP 83622 to 84222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,198 DEBUG Processing 780/850 atomic regions from SNP 233859 to 234459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,295 DEBUG Processing 278/729 atomic regions from SNP 83227 to 83827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,320 DEBUG Processing 290/744 atomic regions from SNP 86796 to 87396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,348 DEBUG Processing 280/700 atomic regions from SNP 83922 to 84522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,439 DEBUG Processing 781/850 atomic regions from SNP 234159 to 234759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,524 DEBUG Processing 279/729 atomic regions from SNP 83527 to 84127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,548 DEBUG Processing 291/744 atomic regions from SNP 87096 to 87696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,567 DEBUG Processing 281/700 atomic regions from SNP 84222 to 84822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,679 DEBUG Processing 782/850 atomic regions from SNP 234459 to 235059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,754 DEBUG Processing 280/729 atomic regions from SNP 83827 to 84427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,776 DEBUG Processing 292/744 atomic regions from SNP 87396 to 87996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,784 DEBUG Processing 282/700 atomic regions from SNP 84522 to 85122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,920 DEBUG Processing 783/850 atomic regions from SNP 234759 to 235359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,987 DEBUG Processing 281/729 atomic regions from SNP 84127 to 84727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,003 DEBUG Processing 283/700 atomic regions from SNP 84822 to 85422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,013 DEBUG Processing 293/744 atomic regions from SNP 87696 to 88296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,159 DEBUG Processing 784/850 atomic regions from SNP 235059 to 235659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,218 DEBUG Processing 282/729 atomic regions from SNP 84427 to 85027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,225 DEBUG Processing 284/700 atomic regions from SNP 85122 to 85722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,246 DEBUG Processing 294/744 atomic regions from SNP 87996 to 88596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,406 DEBUG Processing 785/850 atomic regions from SNP 235359 to 235959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,445 DEBUG Processing 283/729 atomic regions from SNP 84727 to 85327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,449 DEBUG Processing 285/700 atomic regions from SNP 85422 to 86022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,473 DEBUG Processing 295/744 atomic regions from SNP 88296 to 88896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,640 DEBUG Processing 786/850 atomic regions from SNP 235659 to 236259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,678 DEBUG Processing 284/729 atomic regions from SNP 85027 to 85627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,691 DEBUG Processing 286/700 atomic regions from SNP 85722 to 86322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,701 DEBUG Processing 296/744 atomic regions from SNP 88596 to 89196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,871 DEBUG Processing 787/850 atomic regions from SNP 235959 to 236559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,905 DEBUG Processing 285/729 atomic regions from SNP 85327 to 85927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,928 DEBUG Processing 297/744 atomic regions from SNP 88896 to 89496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,930 DEBUG Processing 287/700 atomic regions from SNP 86022 to 86622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,110 DEBUG Processing 788/850 atomic regions from SNP 236259 to 236859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,127 DEBUG Processing 286/729 atomic regions from SNP 85627 to 86227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,150 DEBUG Processing 298/744 atomic regions from SNP 89196 to 89796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,154 DEBUG Processing 288/700 atomic regions from SNP 86322 to 86922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,361 DEBUG Processing 287/729 atomic regions from SNP 85927 to 86527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,365 DEBUG Processing 789/850 atomic regions from SNP 236559 to 237159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,381 DEBUG Processing 299/744 atomic regions from SNP 89496 to 90096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,390 DEBUG Processing 289/700 atomic regions from SNP 86622 to 87222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,599 DEBUG Processing 288/729 atomic regions from SNP 86227 to 86827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,609 DEBUG Processing 790/850 atomic regions from SNP 236859 to 237459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,618 DEBUG Processing 300/744 atomic regions from SNP 89796 to 90396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,623 DEBUG Processing 290/700 atomic regions from SNP 86922 to 87522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,842 DEBUG Processing 289/729 atomic regions from SNP 86527 to 87127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,853 DEBUG Processing 791/850 atomic regions from SNP 237159 to 237759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,856 DEBUG Processing 301/744 atomic regions from SNP 90096 to 90696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,857 DEBUG Processing 291/700 atomic regions from SNP 87222 to 87822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,081 DEBUG Processing 290/729 atomic regions from SNP 86827 to 87427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,094 DEBUG Processing 302/744 atomic regions from SNP 90396 to 90996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,094 DEBUG Processing 292/700 atomic regions from SNP 87522 to 88122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,100 DEBUG Processing 792/850 atomic regions from SNP 237459 to 238059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,317 DEBUG Processing 291/729 atomic regions from SNP 87127 to 87727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,329 DEBUG Processing 293/700 atomic regions from SNP 87822 to 88422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,329 DEBUG Processing 303/744 atomic regions from SNP 90696 to 91296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,348 DEBUG Processing 793/850 atomic regions from SNP 237759 to 238359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,552 DEBUG Processing 292/729 atomic regions from SNP 87427 to 88027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,558 DEBUG Processing 294/700 atomic regions from SNP 88122 to 88722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,564 DEBUG Processing 304/744 atomic regions from SNP 90996 to 91596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,589 DEBUG Processing 794/850 atomic regions from SNP 238059 to 238659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,779 DEBUG Processing 293/729 atomic regions from SNP 87727 to 88327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,785 DEBUG Processing 295/700 atomic regions from SNP 88422 to 89022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,794 DEBUG Processing 305/744 atomic regions from SNP 91296 to 91896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,828 DEBUG Processing 795/850 atomic regions from SNP 238359 to 238959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,004 DEBUG Processing 294/729 atomic regions from SNP 88027 to 88627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,007 DEBUG Processing 296/700 atomic regions from SNP 88722 to 89322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,023 DEBUG Processing 306/744 atomic regions from SNP 91596 to 92196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,067 DEBUG Processing 796/850 atomic regions from SNP 238659 to 239259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,229 DEBUG Processing 297/700 atomic regions from SNP 89022 to 89622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,233 DEBUG Processing 295/729 atomic regions from SNP 88327 to 88927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,252 DEBUG Processing 307/744 atomic regions from SNP 91896 to 92496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,302 DEBUG Processing 797/850 atomic regions from SNP 238959 to 239559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,450 DEBUG Processing 298/700 atomic regions from SNP 89322 to 89922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,466 DEBUG Processing 296/729 atomic regions from SNP 88627 to 89227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,485 DEBUG Processing 308/744 atomic regions from SNP 92196 to 92796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,539 DEBUG Processing 798/850 atomic regions from SNP 239259 to 239859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,669 DEBUG Processing 299/700 atomic regions from SNP 89622 to 90222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,701 DEBUG Processing 297/729 atomic regions from SNP 88927 to 89527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,720 DEBUG Processing 309/744 atomic regions from SNP 92496 to 93096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,777 DEBUG Processing 799/850 atomic regions from SNP 239559 to 240159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,885 DEBUG Processing 300/700 atomic regions from SNP 89922 to 90522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,935 DEBUG Processing 298/729 atomic regions from SNP 89227 to 89827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,957 DEBUG Processing 310/744 atomic regions from SNP 92796 to 93396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,013 DEBUG Processing 800/850 atomic regions from SNP 239859 to 240459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,100 DEBUG Processing 301/700 atomic regions from SNP 90222 to 90822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,169 DEBUG Processing 299/729 atomic regions from SNP 89527 to 90127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,189 DEBUG Processing 311/744 atomic regions from SNP 93096 to 93696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,251 DEBUG Processing 801/850 atomic regions from SNP 240159 to 240759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,317 DEBUG Processing 302/700 atomic regions from SNP 90522 to 91122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,403 DEBUG Processing 300/729 atomic regions from SNP 89827 to 90427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,424 DEBUG Processing 312/744 atomic regions from SNP 93396 to 93996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,486 DEBUG Processing 802/850 atomic regions from SNP 240459 to 241059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,538 DEBUG Processing 303/700 atomic regions from SNP 90822 to 91422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,636 DEBUG Processing 301/729 atomic regions from SNP 90127 to 90727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,659 DEBUG Processing 313/744 atomic regions from SNP 93696 to 94296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,726 DEBUG Processing 803/850 atomic regions from SNP 240759 to 241359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,775 DEBUG Processing 304/700 atomic regions from SNP 91122 to 91722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,869 DEBUG Processing 302/729 atomic regions from SNP 90427 to 91027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,890 DEBUG Processing 314/744 atomic regions from SNP 93996 to 94596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,959 DEBUG Processing 804/850 atomic regions from SNP 241059 to 241659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,013 DEBUG Processing 305/700 atomic regions from SNP 91422 to 92022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,110 DEBUG Processing 303/729 atomic regions from SNP 90727 to 91327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,124 DEBUG Processing 315/744 atomic regions from SNP 94296 to 94896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,191 DEBUG Processing 805/850 atomic regions from SNP 241359 to 241959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,251 DEBUG Processing 306/700 atomic regions from SNP 91722 to 92322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,365 DEBUG Processing 304/729 atomic regions from SNP 91027 to 91627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,366 DEBUG Processing 316/744 atomic regions from SNP 94596 to 95196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,429 DEBUG Processing 806/850 atomic regions from SNP 241659 to 242259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,503 DEBUG Processing 307/700 atomic regions from SNP 92022 to 92622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,608 DEBUG Processing 317/744 atomic regions from SNP 94896 to 95496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,626 DEBUG Processing 305/729 atomic regions from SNP 91327 to 91927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,663 DEBUG Processing 807/850 atomic regions from SNP 241959 to 242559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,747 DEBUG Processing 308/700 atomic regions from SNP 92322 to 92922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,860 DEBUG Processing 318/744 atomic regions from SNP 95196 to 95796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,868 DEBUG Processing 306/729 atomic regions from SNP 91627 to 92227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,898 DEBUG Processing 808/850 atomic regions from SNP 242259 to 242859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,987 DEBUG Processing 309/700 atomic regions from SNP 92622 to 93222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,105 DEBUG Processing 319/744 atomic regions from SNP 95496 to 96096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,112 DEBUG Processing 307/729 atomic regions from SNP 91927 to 92527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,133 DEBUG Processing 809/850 atomic regions from SNP 242559 to 243159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,234 DEBUG Processing 310/700 atomic regions from SNP 92922 to 93522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,339 DEBUG Processing 320/744 atomic regions from SNP 95796 to 96396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,353 DEBUG Processing 308/729 atomic regions from SNP 92227 to 92827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,371 DEBUG Processing 810/850 atomic regions from SNP 242859 to 243459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,473 DEBUG Processing 311/700 atomic regions from SNP 93222 to 93822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,573 DEBUG Processing 321/744 atomic regions from SNP 96096 to 96696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,590 DEBUG Processing 309/729 atomic regions from SNP 92527 to 93127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,611 DEBUG Processing 811/850 atomic regions from SNP 243159 to 243759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,729 DEBUG Processing 312/700 atomic regions from SNP 93522 to 94122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,805 DEBUG Processing 322/744 atomic regions from SNP 96396 to 96996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,826 DEBUG Processing 310/729 atomic regions from SNP 92827 to 93427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,861 DEBUG Processing 812/850 atomic regions from SNP 243459 to 244059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,987 DEBUG Processing 313/700 atomic regions from SNP 93822 to 94422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,035 DEBUG Processing 323/744 atomic regions from SNP 96696 to 97296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,061 DEBUG Processing 311/729 atomic regions from SNP 93127 to 93727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,126 DEBUG Processing 813/850 atomic regions from SNP 243759 to 244359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,247 DEBUG Processing 314/700 atomic regions from SNP 94122 to 94722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,288 DEBUG Processing 324/744 atomic regions from SNP 96996 to 97596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,290 DEBUG Processing 312/729 atomic regions from SNP 93427 to 94027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,366 DEBUG Processing 814/850 atomic regions from SNP 244059 to 244659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,474 DEBUG Processing 315/700 atomic regions from SNP 94422 to 95022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,523 DEBUG Processing 313/729 atomic regions from SNP 93727 to 94327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,532 DEBUG Processing 325/744 atomic regions from SNP 97296 to 97896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,611 DEBUG Processing 815/850 atomic regions from SNP 244359 to 244959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,715 DEBUG Processing 316/700 atomic regions from SNP 94722 to 95322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,764 DEBUG Processing 314/729 atomic regions from SNP 94027 to 94627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,769 DEBUG Processing 326/744 atomic regions from SNP 97596 to 98196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,849 DEBUG Processing 816/850 atomic regions from SNP 244659 to 245259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,964 DEBUG Processing 317/700 atomic regions from SNP 95022 to 95622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,007 DEBUG Processing 315/729 atomic regions from SNP 94327 to 94927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,022 DEBUG Processing 327/744 atomic regions from SNP 97896 to 98496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,088 DEBUG Processing 817/850 atomic regions from SNP 244959 to 245559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,214 DEBUG Processing 318/700 atomic regions from SNP 95322 to 95922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,252 DEBUG Processing 316/729 atomic regions from SNP 94627 to 95227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,299 DEBUG Processing 328/744 atomic regions from SNP 98196 to 98796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,328 DEBUG Processing 818/850 atomic regions from SNP 245259 to 245859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,454 DEBUG Processing 319/700 atomic regions from SNP 95622 to 96222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,491 DEBUG Processing 317/729 atomic regions from SNP 94927 to 95527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,563 DEBUG Processing 329/744 atomic regions from SNP 98496 to 99096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,572 DEBUG Processing 819/850 atomic regions from SNP 245559 to 246159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,675 DEBUG Processing 320/700 atomic regions from SNP 95922 to 96522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,728 DEBUG Processing 318/729 atomic regions from SNP 95227 to 95827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,812 DEBUG Processing 820/850 atomic regions from SNP 245859 to 246459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,826 DEBUG Processing 330/744 atomic regions from SNP 98796 to 99396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,900 DEBUG Processing 321/700 atomic regions from SNP 96222 to 96822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,964 DEBUG Processing 319/729 atomic regions from SNP 95527 to 96127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,054 DEBUG Processing 821/850 atomic regions from SNP 246159 to 246759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,090 DEBUG Processing 331/744 atomic regions from SNP 99096 to 99696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,134 DEBUG Processing 322/700 atomic regions from SNP 96522 to 97122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,193 DEBUG Processing 320/729 atomic regions from SNP 95827 to 96427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,305 DEBUG Processing 822/850 atomic regions from SNP 246459 to 247059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,360 DEBUG Processing 332/744 atomic regions from SNP 99396 to 99996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,372 DEBUG Processing 323/700 atomic regions from SNP 96822 to 97422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,429 DEBUG Processing 321/729 atomic regions from SNP 96127 to 96727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,551 DEBUG Processing 823/850 atomic regions from SNP 246759 to 247359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,611 DEBUG Processing 324/700 atomic regions from SNP 97122 to 97722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,626 DEBUG Processing 333/744 atomic regions from SNP 99696 to 100296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,669 DEBUG Processing 322/729 atomic regions from SNP 96427 to 97027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,795 DEBUG Processing 824/850 atomic regions from SNP 247059 to 247659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,846 DEBUG Processing 325/700 atomic regions from SNP 97422 to 98022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,888 DEBUG Processing 334/744 atomic regions from SNP 99996 to 100596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,928 DEBUG Processing 323/729 atomic regions from SNP 96727 to 97327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,042 DEBUG Processing 825/850 atomic regions from SNP 247359 to 247959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,083 DEBUG Processing 326/700 atomic regions from SNP 97722 to 98322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,145 DEBUG Processing 335/744 atomic regions from SNP 100296 to 100896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,188 DEBUG Processing 324/729 atomic regions from SNP 97027 to 97627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,289 DEBUG Processing 826/850 atomic regions from SNP 247659 to 248259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,320 DEBUG Processing 327/700 atomic regions from SNP 98022 to 98622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,411 DEBUG Processing 336/744 atomic regions from SNP 100596 to 101196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,437 DEBUG Processing 325/729 atomic regions from SNP 97327 to 97927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,541 DEBUG Processing 827/850 atomic regions from SNP 247959 to 248559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,558 DEBUG Processing 328/700 atomic regions from SNP 98322 to 98922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,675 DEBUG Processing 337/744 atomic regions from SNP 100896 to 101496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,681 DEBUG Processing 326/729 atomic regions from SNP 97627 to 98227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,788 DEBUG Processing 828/850 atomic regions from SNP 248259 to 248859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,793 DEBUG Processing 329/700 atomic regions from SNP 98622 to 99222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,927 DEBUG Processing 327/729 atomic regions from SNP 97927 to 98527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,950 DEBUG Processing 338/744 atomic regions from SNP 101196 to 101796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,027 DEBUG Processing 330/700 atomic regions from SNP 98922 to 99522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,037 DEBUG Processing 829/850 atomic regions from SNP 248559 to 249159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,170 DEBUG Processing 328/729 atomic regions from SNP 98227 to 98827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,220 DEBUG Processing 339/744 atomic regions from SNP 101496 to 102096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,259 DEBUG Processing 331/700 atomic regions from SNP 99222 to 99822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,285 DEBUG Processing 830/850 atomic regions from SNP 248859 to 249459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,417 DEBUG Processing 329/729 atomic regions from SNP 98527 to 99127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,488 DEBUG Processing 340/744 atomic regions from SNP 101796 to 102396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,501 DEBUG Processing 332/700 atomic regions from SNP 99522 to 100122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,541 DEBUG Processing 831/850 atomic regions from SNP 249159 to 249759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,656 DEBUG Processing 330/729 atomic regions from SNP 98827 to 99427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,737 DEBUG Processing 333/700 atomic regions from SNP 99822 to 100422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,750 DEBUG Processing 341/744 atomic regions from SNP 102096 to 102696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,793 DEBUG Processing 832/850 atomic regions from SNP 249459 to 250059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,890 DEBUG Processing 331/729 atomic regions from SNP 99127 to 99727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,965 DEBUG Processing 334/700 atomic regions from SNP 100122 to 100722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,009 DEBUG Processing 342/744 atomic regions from SNP 102396 to 102996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,046 DEBUG Processing 833/850 atomic regions from SNP 249759 to 250359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,128 DEBUG Processing 332/729 atomic regions from SNP 99427 to 100027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,185 DEBUG Processing 335/700 atomic regions from SNP 100422 to 101022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,289 DEBUG Processing 343/744 atomic regions from SNP 102696 to 103296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,317 DEBUG Processing 834/850 atomic regions from SNP 250059 to 250659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,370 DEBUG Processing 333/729 atomic regions from SNP 99727 to 100327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,405 DEBUG Processing 336/700 atomic regions from SNP 100722 to 101322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,567 DEBUG Processing 344/744 atomic regions from SNP 102996 to 103596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,575 DEBUG Processing 835/850 atomic regions from SNP 250359 to 250959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,616 DEBUG Processing 334/729 atomic regions from SNP 100027 to 100627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,627 DEBUG Processing 337/700 atomic regions from SNP 101022 to 101622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,830 DEBUG Processing 836/850 atomic regions from SNP 250659 to 251259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,843 DEBUG Processing 345/744 atomic regions from SNP 103296 to 103896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,851 DEBUG Processing 338/700 atomic regions from SNP 101322 to 101922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,861 DEBUG Processing 335/729 atomic regions from SNP 100327 to 100927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,072 DEBUG Processing 837/850 atomic regions from SNP 250959 to 251559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,078 DEBUG Processing 339/700 atomic regions from SNP 101622 to 102222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,105 DEBUG Processing 336/729 atomic regions from SNP 100627 to 101227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,105 DEBUG Processing 346/744 atomic regions from SNP 103596 to 104196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,316 DEBUG Processing 838/850 atomic regions from SNP 251259 to 251859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,322 DEBUG Processing 340/700 atomic regions from SNP 101922 to 102522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,352 DEBUG Processing 337/729 atomic regions from SNP 100927 to 101527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,372 DEBUG Processing 347/744 atomic regions from SNP 103896 to 104496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,546 DEBUG Processing 341/700 atomic regions from SNP 102222 to 102822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,554 DEBUG Processing 839/850 atomic regions from SNP 251559 to 252159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,594 DEBUG Processing 338/729 atomic regions from SNP 101227 to 101827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,636 DEBUG Processing 348/744 atomic regions from SNP 104196 to 104796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,768 DEBUG Processing 342/700 atomic regions from SNP 102522 to 103122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,791 DEBUG Processing 840/850 atomic regions from SNP 251859 to 252459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,834 DEBUG Processing 339/729 atomic regions from SNP 101527 to 102127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,891 DEBUG Processing 349/744 atomic regions from SNP 104496 to 105096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,990 DEBUG Processing 343/700 atomic regions from SNP 102822 to 103422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,034 DEBUG Processing 841/850 atomic regions from SNP 252159 to 252759 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,070 DEBUG Processing 340/729 atomic regions from SNP 101827 to 102427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,152 DEBUG Processing 350/744 atomic regions from SNP 104796 to 105396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,215 DEBUG Processing 344/700 atomic regions from SNP 103122 to 103722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,282 DEBUG Processing 842/850 atomic regions from SNP 252459 to 253059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,302 DEBUG Processing 341/729 atomic regions from SNP 102127 to 102727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,400 DEBUG Processing 351/744 atomic regions from SNP 105096 to 105696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,441 DEBUG Processing 345/700 atomic regions from SNP 103422 to 104022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,527 DEBUG Processing 843/850 atomic regions from SNP 252759 to 253359 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,541 DEBUG Processing 342/729 atomic regions from SNP 102427 to 103027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,627 DEBUG Processing 352/744 atomic regions from SNP 105396 to 105996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,656 DEBUG Processing 346/700 atomic regions from SNP 103722 to 104322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,770 DEBUG Processing 844/850 atomic regions from SNP 253059 to 253659 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,787 DEBUG Processing 343/729 atomic regions from SNP 102727 to 103327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,860 DEBUG Processing 353/744 atomic regions from SNP 105696 to 106296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,867 DEBUG Processing 347/700 atomic regions from SNP 104022 to 104622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,017 DEBUG Processing 845/850 atomic regions from SNP 253359 to 253959 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,030 DEBUG Processing 344/729 atomic regions from SNP 103027 to 103627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,086 DEBUG Processing 348/700 atomic regions from SNP 104322 to 104922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,094 DEBUG Processing 354/744 atomic regions from SNP 105996 to 106596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,262 DEBUG Processing 846/850 atomic regions from SNP 253659 to 254259 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,271 DEBUG Processing 345/729 atomic regions from SNP 103327 to 103927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,310 DEBUG Processing 349/700 atomic regions from SNP 104622 to 105222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,337 DEBUG Processing 355/744 atomic regions from SNP 106296 to 106896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,503 DEBUG Processing 847/850 atomic regions from SNP 253959 to 254559 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,518 DEBUG Processing 346/729 atomic regions from SNP 103627 to 104227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,534 DEBUG Processing 350/700 atomic regions from SNP 104922 to 105522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,580 DEBUG Processing 356/744 atomic regions from SNP 106596 to 107196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,748 DEBUG Processing 848/850 atomic regions from SNP 254259 to 254859 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,759 DEBUG Processing 351/700 atomic regions from SNP 105222 to 105822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,766 DEBUG Processing 347/729 atomic regions from SNP 103927 to 104527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,824 DEBUG Processing 357/744 atomic regions from SNP 106896 to 107496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,983 DEBUG Processing 352/700 atomic regions from SNP 105522 to 106122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,001 DEBUG Processing 849/850 atomic regions from SNP 254559 to 255159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,011 DEBUG Processing 348/729 atomic regions from SNP 104227 to 104827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,072 DEBUG Processing 358/744 atomic regions from SNP 107196 to 107796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,203 DEBUG Processing 353/700 atomic regions from SNP 105822 to 106422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,246 DEBUG Processing 850/850 atomic regions from SNP 254859 to 255459 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,247 DEBUG Processing 349/729 atomic regions from SNP 104527 to 105127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,323 DEBUG Processing 359/744 atomic regions from SNP 107496 to 108096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,375 DEBUG Unique SNPs positions in subchromosome 1: 255460 2025-01-31 09:50:33,421 DEBUG Processing 354/700 atomic regions from SNP 106122 to 106722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,473 DEBUG Processing 350/729 atomic regions from SNP 104827 to 105427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,569 DEBUG Processing 360/744 atomic regions from SNP 107796 to 108396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,641 DEBUG Processing 355/700 atomic regions from SNP 106422 to 107022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,696 DEBUG Processing 351/729 atomic regions from SNP 105127 to 105727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,813 DEBUG Processing 361/744 atomic regions from SNP 108096 to 108696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,865 DEBUG Processing 356/700 atomic regions from SNP 106722 to 107322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,925 DEBUG Processing 352/729 atomic regions from SNP 105427 to 106027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,053 DEBUG Processing 362/744 atomic regions from SNP 108396 to 108996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,090 DEBUG Processing 357/700 atomic regions from SNP 107022 to 107622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,156 DEBUG Processing 353/729 atomic regions from SNP 105727 to 106327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,294 DEBUG Processing 363/744 atomic regions from SNP 108696 to 109296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,315 DEBUG Processing 358/700 atomic regions from SNP 107322 to 107922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,394 DEBUG Processing 354/729 atomic regions from SNP 106027 to 106627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,531 DEBUG Processing 364/744 atomic regions from SNP 108996 to 109596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,540 DEBUG Processing 359/700 atomic regions from SNP 107622 to 108222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,637 DEBUG Processing 355/729 atomic regions from SNP 106327 to 106927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,762 DEBUG Processing 360/700 atomic regions from SNP 107922 to 108522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,762 DEBUG Processing 365/744 atomic regions from SNP 109296 to 109896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,887 DEBUG Processing 356/729 atomic regions from SNP 106627 to 107227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,979 DEBUG Processing 361/700 atomic regions from SNP 108222 to 108822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,989 DEBUG Processing 366/744 atomic regions from SNP 109596 to 110196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,128 DEBUG Processing 357/729 atomic regions from SNP 106927 to 107527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,198 DEBUG Processing 362/700 atomic regions from SNP 108522 to 109122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,223 DEBUG Processing 367/744 atomic regions from SNP 109896 to 110496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,366 DEBUG Processing 358/729 atomic regions from SNP 107227 to 107827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,419 DEBUG Processing 363/700 atomic regions from SNP 108822 to 109422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,461 DEBUG Processing 368/744 atomic regions from SNP 110196 to 110796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,609 DEBUG Processing 359/729 atomic regions from SNP 107527 to 108127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,639 DEBUG Processing 364/700 atomic regions from SNP 109122 to 109722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,705 DEBUG Processing 369/744 atomic regions from SNP 110496 to 111096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,847 DEBUG Processing 360/729 atomic regions from SNP 107827 to 108427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,861 DEBUG Processing 365/700 atomic regions from SNP 109422 to 110022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,952 DEBUG Processing 370/744 atomic regions from SNP 110796 to 111396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,087 DEBUG Processing 366/700 atomic regions from SNP 109722 to 110322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,088 DEBUG Processing 361/729 atomic regions from SNP 108127 to 108727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,199 DEBUG Processing 371/744 atomic regions from SNP 111096 to 111696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,311 DEBUG Processing 367/700 atomic regions from SNP 110022 to 110622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,325 DEBUG Processing 362/729 atomic regions from SNP 108427 to 109027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,443 DEBUG Processing 372/744 atomic regions from SNP 111396 to 111996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,535 DEBUG Processing 368/700 atomic regions from SNP 110322 to 110922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,569 DEBUG Processing 363/729 atomic regions from SNP 108727 to 109327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,675 DEBUG Processing 373/744 atomic regions from SNP 111696 to 112296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,773 DEBUG Processing 369/700 atomic regions from SNP 110622 to 111222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,817 DEBUG Processing 364/729 atomic regions from SNP 109027 to 109627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,902 DEBUG Processing 374/744 atomic regions from SNP 111996 to 112596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,011 DEBUG Processing 370/700 atomic regions from SNP 110922 to 111522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,064 DEBUG Processing 365/729 atomic regions from SNP 109327 to 109927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,135 DEBUG Processing 375/744 atomic regions from SNP 112296 to 112896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,223 DEBUG Processing 371/700 atomic regions from SNP 111222 to 111822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,306 DEBUG Processing 366/729 atomic regions from SNP 109627 to 110227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,379 DEBUG Processing 376/744 atomic regions from SNP 112596 to 113196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,439 DEBUG Processing 372/700 atomic regions from SNP 111522 to 112122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,550 DEBUG Processing 367/729 atomic regions from SNP 109927 to 110527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,626 DEBUG Processing 377/744 atomic regions from SNP 112896 to 113496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,658 DEBUG Processing 373/700 atomic regions from SNP 111822 to 112422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,799 DEBUG Processing 368/729 atomic regions from SNP 110227 to 110827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,871 DEBUG Processing 378/744 atomic regions from SNP 113196 to 113796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,885 DEBUG Processing 374/700 atomic regions from SNP 112122 to 112722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,044 DEBUG Processing 369/729 atomic regions from SNP 110527 to 111127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,116 DEBUG Processing 379/744 atomic regions from SNP 113496 to 114096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,116 DEBUG Processing 375/700 atomic regions from SNP 112422 to 113022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,291 DEBUG Processing 370/729 atomic regions from SNP 110827 to 111427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,349 DEBUG Processing 376/700 atomic regions from SNP 112722 to 113322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,356 DEBUG Processing 380/744 atomic regions from SNP 113796 to 114396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,534 DEBUG Processing 371/729 atomic regions from SNP 111127 to 111727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,587 DEBUG Processing 377/700 atomic regions from SNP 113022 to 113622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,592 DEBUG Processing 381/744 atomic regions from SNP 114096 to 114696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,775 DEBUG Processing 372/729 atomic regions from SNP 111427 to 112027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,820 DEBUG Processing 378/700 atomic regions from SNP 113322 to 113922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,828 DEBUG Processing 382/744 atomic regions from SNP 114396 to 114996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,030 DEBUG Processing 373/729 atomic regions from SNP 111727 to 112327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,052 DEBUG Processing 379/700 atomic regions from SNP 113622 to 114222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,064 DEBUG Processing 383/744 atomic regions from SNP 114696 to 115296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,282 DEBUG Processing 380/700 atomic regions from SNP 113922 to 114522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,298 DEBUG Processing 374/729 atomic regions from SNP 112027 to 112627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,308 DEBUG Processing 384/744 atomic regions from SNP 114996 to 115596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,513 DEBUG Processing 381/700 atomic regions from SNP 114222 to 114822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,545 DEBUG Processing 385/744 atomic regions from SNP 115296 to 115896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,570 DEBUG Processing 375/729 atomic regions from SNP 112327 to 112927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,742 DEBUG Processing 382/700 atomic regions from SNP 114522 to 115122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,788 DEBUG Processing 386/744 atomic regions from SNP 115596 to 116196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,849 DEBUG Processing 376/729 atomic regions from SNP 112627 to 113227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,969 DEBUG Processing 383/700 atomic regions from SNP 114822 to 115422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,037 DEBUG Processing 387/744 atomic regions from SNP 115896 to 116496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,125 DEBUG Processing 377/729 atomic regions from SNP 112927 to 113527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,195 DEBUG Processing 384/700 atomic regions from SNP 115122 to 115722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,287 DEBUG Processing 388/744 atomic regions from SNP 116196 to 116796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,398 DEBUG Processing 378/729 atomic regions from SNP 113227 to 113827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,422 DEBUG Processing 385/700 atomic regions from SNP 115422 to 116022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,553 DEBUG Processing 389/744 atomic regions from SNP 116496 to 117096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,646 DEBUG Processing 386/700 atomic regions from SNP 115722 to 116322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,667 DEBUG Processing 379/729 atomic regions from SNP 113527 to 114127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,801 DEBUG Processing 390/744 atomic regions from SNP 116796 to 117396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,868 DEBUG Processing 387/700 atomic regions from SNP 116022 to 116622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,927 DEBUG Processing 380/729 atomic regions from SNP 113827 to 114427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,050 DEBUG Processing 391/744 atomic regions from SNP 117096 to 117696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,094 DEBUG Processing 388/700 atomic regions from SNP 116322 to 116922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,173 DEBUG Processing 381/729 atomic regions from SNP 114127 to 114727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,299 DEBUG Processing 392/744 atomic regions from SNP 117396 to 117996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,322 DEBUG Processing 389/700 atomic regions from SNP 116622 to 117222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,415 DEBUG Processing 382/729 atomic regions from SNP 114427 to 115027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,543 DEBUG Processing 393/744 atomic regions from SNP 117696 to 118296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,548 DEBUG Processing 390/700 atomic regions from SNP 116922 to 117522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,683 DEBUG Processing 383/729 atomic regions from SNP 114727 to 115327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,773 DEBUG Processing 391/700 atomic regions from SNP 117222 to 117822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,790 DEBUG Processing 394/744 atomic regions from SNP 117996 to 118596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,951 DEBUG Processing 384/729 atomic regions from SNP 115027 to 115627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,993 DEBUG Processing 392/700 atomic regions from SNP 117522 to 118122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,036 DEBUG Processing 395/744 atomic regions from SNP 118296 to 118896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,199 DEBUG Processing 385/729 atomic regions from SNP 115327 to 115927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,213 DEBUG Processing 393/700 atomic regions from SNP 117822 to 118422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,311 DEBUG Processing 396/744 atomic regions from SNP 118596 to 119196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,427 DEBUG Processing 386/729 atomic regions from SNP 115627 to 116227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,438 DEBUG Processing 394/700 atomic regions from SNP 118122 to 118722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,583 DEBUG Processing 397/744 atomic regions from SNP 118896 to 119496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,666 DEBUG Processing 395/700 atomic regions from SNP 118422 to 119022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,670 DEBUG Processing 387/729 atomic regions from SNP 115927 to 116527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,831 DEBUG Processing 398/744 atomic regions from SNP 119196 to 119796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,899 DEBUG Processing 396/700 atomic regions from SNP 118722 to 119322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,933 DEBUG Processing 388/729 atomic regions from SNP 116227 to 116827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,073 DEBUG Processing 399/744 atomic regions from SNP 119496 to 120096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,136 DEBUG Processing 397/700 atomic regions from SNP 119022 to 119622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,211 DEBUG Processing 389/729 atomic regions from SNP 116527 to 117127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,309 DEBUG Processing 400/744 atomic regions from SNP 119796 to 120396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,367 DEBUG Processing 398/700 atomic regions from SNP 119322 to 119922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,479 DEBUG Processing 390/729 atomic regions from SNP 116827 to 117427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,549 DEBUG Processing 401/744 atomic regions from SNP 120096 to 120696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,591 DEBUG Processing 399/700 atomic regions from SNP 119622 to 120222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,718 DEBUG Processing 391/729 atomic regions from SNP 117127 to 117727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,792 DEBUG Processing 402/744 atomic regions from SNP 120396 to 120996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,820 DEBUG Processing 400/700 atomic regions from SNP 119922 to 120522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,960 DEBUG Processing 392/729 atomic regions from SNP 117427 to 118027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,035 DEBUG Processing 403/744 atomic regions from SNP 120696 to 121296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,049 DEBUG Processing 401/700 atomic regions from SNP 120222 to 120822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,203 DEBUG Processing 393/729 atomic regions from SNP 117727 to 118327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,272 DEBUG Processing 404/744 atomic regions from SNP 120996 to 121596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,278 DEBUG Processing 402/700 atomic regions from SNP 120522 to 121122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,451 DEBUG Processing 394/729 atomic regions from SNP 118027 to 118627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,511 DEBUG Processing 403/700 atomic regions from SNP 120822 to 121422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,515 DEBUG Processing 405/744 atomic regions from SNP 121296 to 121896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,695 DEBUG Processing 395/729 atomic regions from SNP 118327 to 118927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,748 DEBUG Processing 404/700 atomic regions from SNP 121122 to 121722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,762 DEBUG Processing 406/744 atomic regions from SNP 121596 to 122196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,935 DEBUG Processing 396/729 atomic regions from SNP 118627 to 119227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,977 DEBUG Processing 405/700 atomic regions from SNP 121422 to 122022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,000 DEBUG Processing 407/744 atomic regions from SNP 121896 to 122496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,176 DEBUG Processing 397/729 atomic regions from SNP 118927 to 119527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,208 DEBUG Processing 406/700 atomic regions from SNP 121722 to 122322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,239 DEBUG Processing 408/744 atomic regions from SNP 122196 to 122796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,418 DEBUG Processing 398/729 atomic regions from SNP 119227 to 119827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,435 DEBUG Processing 407/700 atomic regions from SNP 122022 to 122622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,476 DEBUG Processing 409/744 atomic regions from SNP 122496 to 123096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,659 DEBUG Processing 399/729 atomic regions from SNP 119527 to 120127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,662 DEBUG Processing 408/700 atomic regions from SNP 122322 to 122922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,711 DEBUG Processing 410/744 atomic regions from SNP 122796 to 123396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,895 DEBUG Processing 409/700 atomic regions from SNP 122622 to 123222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,901 DEBUG Processing 400/729 atomic regions from SNP 119827 to 120427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,950 DEBUG Processing 411/744 atomic regions from SNP 123096 to 123696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,121 DEBUG Processing 410/700 atomic regions from SNP 122922 to 123522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,139 DEBUG Processing 401/729 atomic regions from SNP 120127 to 120727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,183 DEBUG Processing 412/744 atomic regions from SNP 123396 to 123996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,350 DEBUG Processing 411/700 atomic regions from SNP 123222 to 123822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,379 DEBUG Processing 402/729 atomic regions from SNP 120427 to 121027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,414 DEBUG Processing 413/744 atomic regions from SNP 123696 to 124296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,592 DEBUG Processing 412/700 atomic regions from SNP 123522 to 124122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,636 DEBUG Processing 403/729 atomic regions from SNP 120727 to 121327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,648 DEBUG Processing 414/744 atomic regions from SNP 123996 to 124596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,822 DEBUG Processing 413/700 atomic regions from SNP 123822 to 124422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,877 DEBUG Processing 404/729 atomic regions from SNP 121027 to 121627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,885 DEBUG Processing 415/744 atomic regions from SNP 124296 to 124896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,047 DEBUG Processing 414/700 atomic regions from SNP 124122 to 124722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,126 DEBUG Processing 405/729 atomic regions from SNP 121327 to 121927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,132 DEBUG Processing 416/744 atomic regions from SNP 124596 to 125196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,270 DEBUG Processing 415/700 atomic regions from SNP 124422 to 125022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,383 DEBUG Processing 406/729 atomic regions from SNP 121627 to 122227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,387 DEBUG Processing 417/744 atomic regions from SNP 124896 to 125496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,521 DEBUG Processing 416/700 atomic regions from SNP 124722 to 125322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,643 DEBUG Processing 407/729 atomic regions from SNP 121927 to 122527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,644 DEBUG Processing 418/744 atomic regions from SNP 125196 to 125796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,766 DEBUG Processing 417/700 atomic regions from SNP 125022 to 125622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,893 DEBUG Processing 408/729 atomic regions from SNP 122227 to 122827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,894 DEBUG Processing 419/744 atomic regions from SNP 125496 to 126096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,014 DEBUG Processing 418/700 atomic regions from SNP 125322 to 125922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,138 DEBUG Processing 420/744 atomic regions from SNP 125796 to 126396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,140 DEBUG Processing 409/729 atomic regions from SNP 122527 to 123127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,254 DEBUG Processing 419/700 atomic regions from SNP 125622 to 126222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,385 DEBUG Processing 410/729 atomic regions from SNP 122827 to 123427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,399 DEBUG Processing 421/744 atomic regions from SNP 126096 to 126696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,504 DEBUG Processing 420/700 atomic regions from SNP 125922 to 126522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,627 DEBUG Processing 411/729 atomic regions from SNP 123127 to 123727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,672 DEBUG Processing 422/744 atomic regions from SNP 126396 to 126996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,755 DEBUG Processing 421/700 atomic regions from SNP 126222 to 126822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,865 DEBUG Processing 412/729 atomic regions from SNP 123427 to 124027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,947 DEBUG Processing 423/744 atomic regions from SNP 126696 to 127296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,985 DEBUG Processing 422/700 atomic regions from SNP 126522 to 127122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,140 DEBUG Processing 413/729 atomic regions from SNP 123727 to 124327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,202 DEBUG Processing 424/744 atomic regions from SNP 126996 to 127596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,236 DEBUG Processing 423/700 atomic regions from SNP 126822 to 127422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,405 DEBUG Processing 414/729 atomic regions from SNP 124027 to 124627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,433 DEBUG Subchromosome time: 256.60302578203846, subchromosome SNPs: 255460 2025-01-31 09:50:49,434 DEBUG Estimated BADs: [2.18, 0.36, 1.09, 0.73, 4.36, 2.18, 8.72, 2.18, 0.44, 2.18, 17.44, 2.18, 0.55, 1.09, 4.36, 0.55, 6.54, 0.36, 1.09, 10.90, 2.18, 6.54, 2.18, 0.73, 10.90, 4.36, 17.44, 4.36, 0.55, 2.18, 15.26, 2.18, 0.73, 2.18] SNP counts: [10330, 2649, 15729, 13833, 13016, 5421, 2006, 8045, 4215, 1886, 282, 20621, 5106, 7574, 1443, 4248, 5944, 9599, 4941, 1743, 2924, 12601, 18302, 18324, 1775, 19231, 1443, 8273, 4643, 2443, 267, 6596, 5993, 14014] SNP IDs counts: [10330, 2649, 15729, 13833, 13016, 5421, 2006, 8045, 4215, 1886, 282, 20621, 5106, 7574, 1443, 4248, 5944, 9599, 4941, 1743, 2924, 12601, 18302, 18324, 1775, 19231, 1443, 8273, 4643, 2443, 267, 6596, 5993, 14014] Critical gap: 666054bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.02Mbp, 10.74Mbp, 20.01Mbp, 28.26Mbp, 35.24Mbp, 38.27Mbp, 39.32Mbp, 43.99Mbp, 46.49Mbp, 47.59Mbp, 47.88Mbp, 59.32Mbp, 62.45Mbp, 66.96Mbp, 67.80Mbp, 70.71Mbp, 73.94Mbp, 79.82Mbp, 82.65Mbp, 83.57Mbp, 85.15Mbp, 92.00Mbp, 101.92Mbp, 112.69Mbp, 113.62Mbp, 124.66Mbp, 125.44Mbp, 129.95Mbp, 133.33Mbp, 134.79Mbp, 134.93Mbp, 138.49Mbp, 141.90Mbp, 149.74Mbp] 2025-01-31 09:50:49,434 DEBUG chr6 time: 256.603612871957 s 2025-01-31 09:50:49,444 DEBUG Processing 425/744 atomic regions from SNP 127296 to 127896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,485 DEBUG Processing 424/700 atomic regions from SNP 127122 to 127722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,571 DEBUG chr6: Fitting background model for 34 segments 2025-01-31 09:50:49,639 DEBUG Processing 415/729 atomic regions from SNP 124327 to 124927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,703 DEBUG Processing 426/744 atomic regions from SNP 127596 to 128196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,748 DEBUG Processing 425/700 atomic regions from SNP 127422 to 128022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,876 DEBUG Processing 416/729 atomic regions from SNP 124627 to 125227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,978 DEBUG Processing 427/744 atomic regions from SNP 127896 to 128496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,009 DEBUG Processing 426/700 atomic regions from SNP 127722 to 128322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,115 DEBUG Processing 417/729 atomic regions from SNP 124927 to 125527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,225 DEBUG Processing 428/744 atomic regions from SNP 128196 to 128796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,251 DEBUG Processing 427/700 atomic regions from SNP 128022 to 128622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,347 DEBUG Processing 418/729 atomic regions from SNP 125227 to 125827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,462 DEBUG Processing 429/744 atomic regions from SNP 128496 to 129096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,497 DEBUG Processing 428/700 atomic regions from SNP 128322 to 128922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,581 DEBUG Processing 419/729 atomic regions from SNP 125527 to 126127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,712 DEBUG Processing 430/744 atomic regions from SNP 128796 to 129396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,734 DEBUG Processing 429/700 atomic regions from SNP 128622 to 129222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,822 DEBUG Processing 420/729 atomic regions from SNP 125827 to 126427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,961 DEBUG Processing 430/700 atomic regions from SNP 128922 to 129522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,976 DEBUG Processing 431/744 atomic regions from SNP 129096 to 129696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,062 DEBUG Processing 421/729 atomic regions from SNP 126127 to 126727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,213 DEBUG Processing 431/700 atomic regions from SNP 129222 to 129822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,236 DEBUG Processing 432/744 atomic regions from SNP 129396 to 129996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,301 DEBUG Processing 422/729 atomic regions from SNP 126427 to 127027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,471 DEBUG Processing 432/700 atomic regions from SNP 129522 to 130122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,494 DEBUG Processing 433/744 atomic regions from SNP 129696 to 130296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,540 DEBUG Processing 423/729 atomic regions from SNP 126727 to 127327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,709 DEBUG Processing 433/700 atomic regions from SNP 129822 to 130422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,760 DEBUG Processing 434/744 atomic regions from SNP 129996 to 130596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,777 DEBUG Processing 424/729 atomic regions from SNP 127027 to 127627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,967 DEBUG Processing 434/700 atomic regions from SNP 130122 to 130722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,008 DEBUG Processing 435/744 atomic regions from SNP 130296 to 130896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,022 DEBUG Processing 425/729 atomic regions from SNP 127327 to 127927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,215 DEBUG Processing 435/700 atomic regions from SNP 130422 to 131022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,267 DEBUG Processing 426/729 atomic regions from SNP 127627 to 128227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,280 DEBUG Processing 436/744 atomic regions from SNP 130596 to 131196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,453 DEBUG Processing 436/700 atomic regions from SNP 130722 to 131322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,509 DEBUG Processing 427/729 atomic regions from SNP 127927 to 128527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,556 DEBUG Processing 437/744 atomic regions from SNP 130896 to 131496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,716 DEBUG Processing 437/700 atomic regions from SNP 131022 to 131622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,753 DEBUG Processing 428/729 atomic regions from SNP 128227 to 128827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,820 DEBUG Processing 438/744 atomic regions from SNP 131196 to 131796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,967 DEBUG Processing 438/700 atomic regions from SNP 131322 to 131922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,989 DEBUG Processing 429/729 atomic regions from SNP 128527 to 129127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,080 DEBUG Processing 439/744 atomic regions from SNP 131496 to 132096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,209 DEBUG Processing 439/700 atomic regions from SNP 131622 to 132222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,251 DEBUG Processing 430/729 atomic regions from SNP 128827 to 129427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,319 DEBUG Processing 440/744 atomic regions from SNP 131796 to 132396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,470 DEBUG Processing 440/700 atomic regions from SNP 131922 to 132522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,498 DEBUG Processing 431/729 atomic regions from SNP 129127 to 129727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,554 DEBUG Processing 441/744 atomic regions from SNP 132096 to 132696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,726 DEBUG Processing 441/700 atomic regions from SNP 132222 to 132822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,736 DEBUG Processing 432/729 atomic regions from SNP 129427 to 130027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,789 DEBUG Processing 442/744 atomic regions from SNP 132396 to 132996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,977 DEBUG Processing 433/729 atomic regions from SNP 129727 to 130327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,977 DEBUG Processing 442/700 atomic regions from SNP 132522 to 133122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,026 DEBUG Processing 443/744 atomic regions from SNP 132696 to 133296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,219 DEBUG Processing 434/729 atomic regions from SNP 130027 to 130627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,242 DEBUG Processing 443/700 atomic regions from SNP 132822 to 133422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,261 DEBUG Processing 444/744 atomic regions from SNP 132996 to 133596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,465 DEBUG Processing 435/729 atomic regions from SNP 130327 to 130927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,483 DEBUG Processing 444/700 atomic regions from SNP 133122 to 133722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,523 DEBUG Processing 445/744 atomic regions from SNP 133296 to 133896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,706 DEBUG Processing 436/729 atomic regions from SNP 130627 to 131227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,718 DEBUG Processing 445/700 atomic regions from SNP 133422 to 134022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,794 DEBUG Processing 446/744 atomic regions from SNP 133596 to 134196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,953 DEBUG Processing 446/700 atomic regions from SNP 133722 to 134322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,958 DEBUG Processing 437/729 atomic regions from SNP 130927 to 131527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,073 DEBUG Processing 447/744 atomic regions from SNP 133896 to 134496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,189 DEBUG Processing 447/700 atomic regions from SNP 134022 to 134622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,221 DEBUG Processing 438/729 atomic regions from SNP 131227 to 131827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,348 DEBUG Processing 448/744 atomic regions from SNP 134196 to 134796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,422 DEBUG Processing 448/700 atomic regions from SNP 134322 to 134922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,458 DEBUG Processing 439/729 atomic regions from SNP 131527 to 132127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,620 DEBUG Processing 449/744 atomic regions from SNP 134496 to 135096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,657 DEBUG Processing 449/700 atomic regions from SNP 134622 to 135222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,694 DEBUG Processing 440/729 atomic regions from SNP 131827 to 132427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,891 DEBUG Processing 450/744 atomic regions from SNP 134796 to 135396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,892 DEBUG Processing 450/700 atomic regions from SNP 134922 to 135522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,935 DEBUG Processing 441/729 atomic regions from SNP 132127 to 132727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,128 DEBUG Processing 451/700 atomic regions from SNP 135222 to 135822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,165 DEBUG Processing 451/744 atomic regions from SNP 135096 to 135696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,175 DEBUG Processing 442/729 atomic regions from SNP 132427 to 133027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,367 DEBUG Processing 452/700 atomic regions from SNP 135522 to 136122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,414 DEBUG Processing 443/729 atomic regions from SNP 132727 to 133327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,434 DEBUG Processing 452/744 atomic regions from SNP 135396 to 135996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,608 DEBUG Processing 453/700 atomic regions from SNP 135822 to 136422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,656 DEBUG Processing 444/729 atomic regions from SNP 133027 to 133627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,708 DEBUG Processing 453/744 atomic regions from SNP 135696 to 136296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,846 DEBUG Processing 454/700 atomic regions from SNP 136122 to 136722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,885 DEBUG Processing 445/729 atomic regions from SNP 133327 to 133927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,982 DEBUG Processing 454/744 atomic regions from SNP 135996 to 136596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,083 DEBUG Processing 455/700 atomic regions from SNP 136422 to 137022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,110 DEBUG Processing 446/729 atomic regions from SNP 133627 to 134227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,259 DEBUG Processing 455/744 atomic regions from SNP 136296 to 136896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,324 DEBUG Processing 456/700 atomic regions from SNP 136722 to 137322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,350 DEBUG Processing 447/729 atomic regions from SNP 133927 to 134527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,538 DEBUG Processing 456/744 atomic regions from SNP 136596 to 137196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,564 DEBUG Processing 457/700 atomic regions from SNP 137022 to 137622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,590 DEBUG Processing 448/729 atomic regions from SNP 134227 to 134827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,810 DEBUG Processing 458/700 atomic regions from SNP 137322 to 137922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,822 DEBUG Processing 457/744 atomic regions from SNP 136896 to 137496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,839 DEBUG Processing 449/729 atomic regions from SNP 134527 to 135127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,049 DEBUG Processing 459/700 atomic regions from SNP 137622 to 138222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,085 DEBUG Processing 450/729 atomic regions from SNP 134827 to 135427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,098 DEBUG Processing 458/744 atomic regions from SNP 137196 to 137796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,290 DEBUG Processing 460/700 atomic regions from SNP 137922 to 138522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,334 DEBUG Processing 451/729 atomic regions from SNP 135127 to 135727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,363 DEBUG Processing 459/744 atomic regions from SNP 137496 to 138096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,548 DEBUG Processing 461/700 atomic regions from SNP 138222 to 138822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,583 DEBUG Processing 452/729 atomic regions from SNP 135427 to 136027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,613 DEBUG Processing 460/744 atomic regions from SNP 137796 to 138396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,783 DEBUG Processing 462/700 atomic regions from SNP 138522 to 139122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,851 DEBUG Processing 453/729 atomic regions from SNP 135727 to 136327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,863 DEBUG Processing 461/744 atomic regions from SNP 138096 to 138696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,012 DEBUG Processing 463/700 atomic regions from SNP 138822 to 139422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,110 DEBUG Processing 462/744 atomic regions from SNP 138396 to 138996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,132 DEBUG Processing 454/729 atomic regions from SNP 136027 to 136627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,238 DEBUG Processing 464/700 atomic regions from SNP 139122 to 139722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,371 DEBUG Processing 463/744 atomic regions from SNP 138696 to 139296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,405 DEBUG Processing 455/729 atomic regions from SNP 136327 to 136927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,468 DEBUG Processing 465/700 atomic regions from SNP 139422 to 140022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,626 DEBUG Processing 464/744 atomic regions from SNP 138996 to 139596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,681 DEBUG Processing 456/729 atomic regions from SNP 136627 to 137227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,700 DEBUG Processing 466/700 atomic regions from SNP 139722 to 140322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,863 DEBUG Processing 465/744 atomic regions from SNP 139296 to 139896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,931 DEBUG Processing 467/700 atomic regions from SNP 140022 to 140622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,954 DEBUG Processing 457/729 atomic regions from SNP 136927 to 137527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,108 DEBUG Processing 466/744 atomic regions from SNP 139596 to 140196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,160 DEBUG Processing 468/700 atomic regions from SNP 140322 to 140922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,209 DEBUG Processing 458/729 atomic regions from SNP 137227 to 137827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,343 DEBUG Processing 467/744 atomic regions from SNP 139896 to 140496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,385 DEBUG Processing 469/700 atomic regions from SNP 140622 to 141222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,450 DEBUG Processing 459/729 atomic regions from SNP 137527 to 138127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,588 DEBUG Processing 468/744 atomic regions from SNP 140196 to 140796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,606 DEBUG Processing 470/700 atomic regions from SNP 140922 to 141522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,720 DEBUG Processing 460/729 atomic regions from SNP 137827 to 138427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,820 DEBUG Processing 469/744 atomic regions from SNP 140496 to 141096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,831 DEBUG Processing 471/700 atomic regions from SNP 141222 to 141822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,001 DEBUG Processing 461/729 atomic regions from SNP 138127 to 138727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,053 DEBUG Processing 472/700 atomic regions from SNP 141522 to 142122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,054 DEBUG Processing 470/744 atomic regions from SNP 140796 to 141396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,277 DEBUG Processing 462/729 atomic regions from SNP 138427 to 139027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,282 DEBUG Processing 473/700 atomic regions from SNP 141822 to 142422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,293 DEBUG Processing 471/744 atomic regions from SNP 141096 to 141696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,509 DEBUG Processing 474/700 atomic regions from SNP 142122 to 142722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,532 DEBUG Processing 472/744 atomic regions from SNP 141396 to 141996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,546 DEBUG Processing 463/729 atomic regions from SNP 138727 to 139327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,735 DEBUG Processing 475/700 atomic regions from SNP 142422 to 143022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,764 DEBUG Processing 473/744 atomic regions from SNP 141696 to 142296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,784 DEBUG Processing 464/729 atomic regions from SNP 139027 to 139627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,957 DEBUG Processing 476/700 atomic regions from SNP 142722 to 143322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,009 DEBUG Processing 474/744 atomic regions from SNP 141996 to 142596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,024 DEBUG Processing 465/729 atomic regions from SNP 139327 to 139927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,194 DEBUG Processing 477/700 atomic regions from SNP 143022 to 143622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,248 DEBUG Processing 475/744 atomic regions from SNP 142296 to 142896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,260 DEBUG Processing 466/729 atomic regions from SNP 139627 to 140227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,436 DEBUG Processing 478/700 atomic regions from SNP 143322 to 143922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,496 DEBUG Processing 467/729 atomic regions from SNP 139927 to 140527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,497 DEBUG Processing 476/744 atomic regions from SNP 142596 to 143196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,657 DEBUG Processing 479/700 atomic regions from SNP 143622 to 144222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,730 DEBUG Processing 468/729 atomic regions from SNP 140227 to 140827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,731 DEBUG Processing 477/744 atomic regions from SNP 142896 to 143496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,877 DEBUG Processing 480/700 atomic regions from SNP 143922 to 144522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,959 DEBUG Processing 469/729 atomic regions from SNP 140527 to 141127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,961 DEBUG Processing 478/744 atomic regions from SNP 143196 to 143796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,115 DEBUG Processing 481/700 atomic regions from SNP 144222 to 144822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,197 DEBUG Processing 479/744 atomic regions from SNP 143496 to 144096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,197 DEBUG Processing 470/729 atomic regions from SNP 140827 to 141427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,355 DEBUG Processing 482/700 atomic regions from SNP 144522 to 145122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,436 DEBUG Processing 480/744 atomic regions from SNP 143796 to 144396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,437 DEBUG Processing 471/729 atomic regions from SNP 141127 to 141727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,598 DEBUG Processing 483/700 atomic regions from SNP 144822 to 145422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,678 DEBUG Processing 481/744 atomic regions from SNP 144096 to 144696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,679 DEBUG Processing 472/729 atomic regions from SNP 141427 to 142027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,850 DEBUG Processing 484/700 atomic regions from SNP 145122 to 145722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,918 DEBUG Processing 482/744 atomic regions from SNP 144396 to 144996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,925 DEBUG Processing 473/729 atomic regions from SNP 141727 to 142327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,079 DEBUG Processing 485/700 atomic regions from SNP 145422 to 146022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,156 DEBUG Processing 483/744 atomic regions from SNP 144696 to 145296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,165 DEBUG Processing 474/729 atomic regions from SNP 142027 to 142627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,304 DEBUG Processing 486/700 atomic regions from SNP 145722 to 146322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,396 DEBUG Processing 484/744 atomic regions from SNP 144996 to 145596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,405 DEBUG Processing 475/729 atomic regions from SNP 142327 to 142927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,530 DEBUG Processing 487/700 atomic regions from SNP 146022 to 146622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,636 DEBUG Processing 485/744 atomic regions from SNP 145296 to 145896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,648 DEBUG Processing 476/729 atomic regions from SNP 142627 to 143227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,778 DEBUG Processing 488/700 atomic regions from SNP 146322 to 146922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,879 DEBUG Processing 486/744 atomic regions from SNP 145596 to 146196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,894 DEBUG Processing 477/729 atomic regions from SNP 142927 to 143527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,014 DEBUG Processing 489/700 atomic regions from SNP 146622 to 147222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,135 DEBUG Processing 478/729 atomic regions from SNP 143227 to 143827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,137 DEBUG Processing 487/744 atomic regions from SNP 145896 to 146496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,262 DEBUG Processing 490/700 atomic regions from SNP 146922 to 147522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,369 DEBUG Processing 479/729 atomic regions from SNP 143527 to 144127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,373 DEBUG Processing 488/744 atomic regions from SNP 146196 to 146796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,493 DEBUG Processing 491/700 atomic regions from SNP 147222 to 147822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,608 DEBUG Processing 480/729 atomic regions from SNP 143827 to 144427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,609 DEBUG Processing 489/744 atomic regions from SNP 146496 to 147096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,724 DEBUG Processing 492/700 atomic regions from SNP 147522 to 148122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,849 DEBUG Processing 490/744 atomic regions from SNP 146796 to 147396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,851 DEBUG Processing 481/729 atomic regions from SNP 144127 to 144727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,954 DEBUG Processing 493/700 atomic regions from SNP 147822 to 148422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,084 DEBUG Processing 491/744 atomic regions from SNP 147096 to 147696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,107 DEBUG Processing 482/729 atomic regions from SNP 144427 to 145027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,173 DEBUG Processing 494/700 atomic regions from SNP 148122 to 148722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,319 DEBUG Processing 492/744 atomic regions from SNP 147396 to 147996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,364 DEBUG Processing 483/729 atomic regions from SNP 144727 to 145327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,394 DEBUG Processing 495/700 atomic regions from SNP 148422 to 149022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,555 DEBUG Processing 493/744 atomic regions from SNP 147696 to 148296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,609 DEBUG Processing 484/729 atomic regions from SNP 145027 to 145627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,622 DEBUG Processing 496/700 atomic regions from SNP 148722 to 149322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,794 DEBUG Processing 494/744 atomic regions from SNP 147996 to 148596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,848 DEBUG Processing 497/700 atomic regions from SNP 149022 to 149622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,849 DEBUG Processing 485/729 atomic regions from SNP 145327 to 145927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,028 DEBUG Processing 495/744 atomic regions from SNP 148296 to 148896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,077 DEBUG Processing 498/700 atomic regions from SNP 149322 to 149922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,096 DEBUG Processing 486/729 atomic regions from SNP 145627 to 146227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,274 DEBUG Processing 496/744 atomic regions from SNP 148596 to 149196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,301 DEBUG Processing 499/700 atomic regions from SNP 149622 to 150222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,335 DEBUG Processing 487/729 atomic regions from SNP 145927 to 146527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,520 DEBUG Processing 500/700 atomic regions from SNP 149922 to 150522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,526 DEBUG Processing 497/744 atomic regions from SNP 148896 to 149496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,571 DEBUG Processing 488/729 atomic regions from SNP 146227 to 146827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,739 DEBUG Processing 501/700 atomic regions from SNP 150222 to 150822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,755 DEBUG Processing 498/744 atomic regions from SNP 149196 to 149796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,807 DEBUG Processing 489/729 atomic regions from SNP 146527 to 147127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,963 DEBUG Processing 502/700 atomic regions from SNP 150522 to 151122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,980 DEBUG Processing 499/744 atomic regions from SNP 149496 to 150096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,043 DEBUG Processing 490/729 atomic regions from SNP 146827 to 147427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,185 DEBUG Processing 503/700 atomic regions from SNP 150822 to 151422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,211 DEBUG Processing 500/744 atomic regions from SNP 149796 to 150396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,283 DEBUG Processing 491/729 atomic regions from SNP 147127 to 147727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,405 DEBUG Processing 504/700 atomic regions from SNP 151122 to 151722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,446 DEBUG Processing 501/744 atomic regions from SNP 150096 to 150696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,522 DEBUG Processing 492/729 atomic regions from SNP 147427 to 148027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,550 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:08,626 DEBUG Processing 505/700 atomic regions from SNP 151422 to 152022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,680 DEBUG Processing 502/744 atomic regions from SNP 150396 to 150996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,759 DEBUG Processing 493/729 atomic regions from SNP 147727 to 148327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,856 DEBUG Processing 506/700 atomic regions from SNP 151722 to 152322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,918 DEBUG Processing 503/744 atomic regions from SNP 150696 to 151296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,995 DEBUG Processing 494/729 atomic regions from SNP 148027 to 148627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,087 DEBUG Processing 507/700 atomic regions from SNP 152022 to 152622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,157 DEBUG Processing 504/744 atomic regions from SNP 150996 to 151596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,237 DEBUG Processing 495/729 atomic regions from SNP 148327 to 148927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,316 DEBUG Processing 508/700 atomic regions from SNP 152322 to 152922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,399 DEBUG Processing 505/744 atomic regions from SNP 151296 to 151896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,478 DEBUG Processing 496/729 atomic regions from SNP 148627 to 149227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,545 DEBUG Processing 509/700 atomic regions from SNP 152622 to 153222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,637 DEBUG Processing 506/744 atomic regions from SNP 151596 to 152196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,715 DEBUG Processing 497/729 atomic regions from SNP 148927 to 149527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,765 DEBUG Processing 510/700 atomic regions from SNP 152922 to 153522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,865 DEBUG Processing 507/744 atomic regions from SNP 151896 to 152496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,949 DEBUG Processing 498/729 atomic regions from SNP 149227 to 149827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,986 DEBUG Processing 511/700 atomic regions from SNP 153222 to 153822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,087 DEBUG Processing 508/744 atomic regions from SNP 152196 to 152796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,181 DEBUG Processing 499/729 atomic regions from SNP 149527 to 150127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,211 DEBUG Processing 512/700 atomic regions from SNP 153522 to 154122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,314 DEBUG Processing 509/744 atomic regions from SNP 152496 to 153096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,419 DEBUG Processing 500/729 atomic regions from SNP 149827 to 150427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,439 DEBUG Processing 513/700 atomic regions from SNP 153822 to 154422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,539 DEBUG Processing 510/744 atomic regions from SNP 152796 to 153396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,649 DEBUG Processing 501/729 atomic regions from SNP 150127 to 150727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,667 DEBUG Processing 514/700 atomic regions from SNP 154122 to 154722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,768 DEBUG Processing 511/744 atomic regions from SNP 153096 to 153696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,874 DEBUG Processing 502/729 atomic regions from SNP 150427 to 151027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,892 DEBUG Processing 515/700 atomic regions from SNP 154422 to 155022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,007 DEBUG Processing 512/744 atomic regions from SNP 153396 to 153996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,111 DEBUG Processing 503/729 atomic regions from SNP 150727 to 151327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,125 DEBUG Processing 516/700 atomic regions from SNP 154722 to 155322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,267 DEBUG Processing 513/744 atomic regions from SNP 153696 to 154296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,350 DEBUG Processing 504/729 atomic regions from SNP 151027 to 151627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,359 DEBUG Processing 517/700 atomic regions from SNP 155022 to 155622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,538 DEBUG Processing 514/744 atomic regions from SNP 153996 to 154596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,590 DEBUG Processing 518/700 atomic regions from SNP 155322 to 155922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,592 DEBUG Processing 505/729 atomic regions from SNP 151327 to 151927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,782 DEBUG Processing 515/744 atomic regions from SNP 154296 to 154896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,819 DEBUG Processing 519/700 atomic regions from SNP 155622 to 156222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,837 DEBUG Processing 506/729 atomic regions from SNP 151627 to 152227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,018 DEBUG Processing 516/744 atomic regions from SNP 154596 to 155196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,058 DEBUG Processing 520/700 atomic regions from SNP 155922 to 156522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,077 DEBUG Processing 507/729 atomic regions from SNP 151927 to 152527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,264 DEBUG Processing 517/744 atomic regions from SNP 154896 to 155496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,317 DEBUG Processing 521/700 atomic regions from SNP 156222 to 156822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,322 DEBUG Processing 508/729 atomic regions from SNP 152227 to 152827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,519 DEBUG Processing 518/744 atomic regions from SNP 155196 to 155796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,571 DEBUG Processing 509/729 atomic regions from SNP 152527 to 153127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,578 DEBUG Processing 522/700 atomic regions from SNP 156522 to 157122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,765 DEBUG Processing 519/744 atomic regions from SNP 155496 to 156096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,814 DEBUG Processing 510/729 atomic regions from SNP 152827 to 153427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,827 DEBUG Processing 523/700 atomic regions from SNP 156822 to 157422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,015 DEBUG Processing 520/744 atomic regions from SNP 155796 to 156396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,060 DEBUG Processing 524/700 atomic regions from SNP 157122 to 157722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,061 DEBUG Processing 511/729 atomic regions from SNP 153127 to 153727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,260 DEBUG Processing 521/744 atomic regions from SNP 156096 to 156696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,290 DEBUG Processing 525/700 atomic regions from SNP 157422 to 158022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,303 DEBUG Processing 512/729 atomic regions from SNP 153427 to 154027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,498 DEBUG Processing 522/744 atomic regions from SNP 156396 to 156996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,519 DEBUG Processing 526/700 atomic regions from SNP 157722 to 158322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,539 DEBUG Processing 513/729 atomic regions from SNP 153727 to 154327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,742 DEBUG Processing 523/744 atomic regions from SNP 156696 to 157296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,751 DEBUG Processing 527/700 atomic regions from SNP 158022 to 158622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,785 DEBUG Processing 514/729 atomic regions from SNP 154027 to 154627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,983 DEBUG Processing 528/700 atomic regions from SNP 158322 to 158922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,984 DEBUG Processing 524/744 atomic regions from SNP 156996 to 157596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,028 DEBUG Processing 515/729 atomic regions from SNP 154327 to 154927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,217 DEBUG Processing 529/700 atomic regions from SNP 158622 to 159222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,248 DEBUG Processing 525/744 atomic regions from SNP 157296 to 157896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,272 DEBUG Processing 516/729 atomic regions from SNP 154627 to 155227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,449 DEBUG Processing 530/700 atomic regions from SNP 158922 to 159522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,510 DEBUG Processing 526/744 atomic regions from SNP 157596 to 158196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,515 DEBUG Processing 517/729 atomic regions from SNP 154927 to 155527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,677 DEBUG Processing 531/700 atomic regions from SNP 159222 to 159822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,763 DEBUG Processing 527/744 atomic regions from SNP 157896 to 158496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,776 DEBUG Processing 518/729 atomic regions from SNP 155227 to 155827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,901 DEBUG Processing 532/700 atomic regions from SNP 159522 to 160122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,027 DEBUG Processing 528/744 atomic regions from SNP 158196 to 158796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,041 DEBUG Processing 519/729 atomic regions from SNP 155527 to 156127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,122 DEBUG Processing 533/700 atomic regions from SNP 159822 to 160422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,284 DEBUG Processing 529/744 atomic regions from SNP 158496 to 159096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,308 DEBUG Processing 520/729 atomic regions from SNP 155827 to 156427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,344 DEBUG Processing 534/700 atomic regions from SNP 160122 to 160722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,547 DEBUG Processing 530/744 atomic regions from SNP 158796 to 159396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,565 DEBUG Processing 535/700 atomic regions from SNP 160422 to 161022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,571 DEBUG Processing 521/729 atomic regions from SNP 156127 to 156727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,788 DEBUG Processing 536/700 atomic regions from SNP 160722 to 161322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,799 DEBUG Processing 531/744 atomic regions from SNP 159096 to 159696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,837 DEBUG Processing 522/729 atomic regions from SNP 156427 to 157027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,024 DEBUG Processing 537/700 atomic regions from SNP 161022 to 161622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,043 DEBUG Processing 532/744 atomic regions from SNP 159396 to 159996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,110 DEBUG Processing 523/729 atomic regions from SNP 156727 to 157327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,250 DEBUG Processing 538/700 atomic regions from SNP 161322 to 161922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,287 DEBUG Processing 533/744 atomic regions from SNP 159696 to 160296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,389 DEBUG Processing 524/729 atomic regions from SNP 157027 to 157627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,467 DEBUG Processing 539/700 atomic regions from SNP 161622 to 162222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,534 DEBUG Processing 534/744 atomic regions from SNP 159996 to 160596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,662 DEBUG Processing 525/729 atomic regions from SNP 157327 to 157927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,688 DEBUG Processing 540/700 atomic regions from SNP 161922 to 162522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,770 DEBUG Processing 535/744 atomic regions from SNP 160296 to 160896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,910 DEBUG Processing 541/700 atomic regions from SNP 162222 to 162822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,922 DEBUG Processing 526/729 atomic regions from SNP 157627 to 158227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,011 DEBUG Processing 536/744 atomic regions from SNP 160596 to 161196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,127 DEBUG Processing 542/700 atomic regions from SNP 162522 to 163122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,193 DEBUG Processing 527/729 atomic regions from SNP 157927 to 158527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,250 DEBUG Processing 537/744 atomic regions from SNP 160896 to 161496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,344 DEBUG Processing 543/700 atomic regions from SNP 162822 to 163422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,444 DEBUG Processing 528/729 atomic regions from SNP 158227 to 158827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,487 DEBUG Processing 538/744 atomic regions from SNP 161196 to 161796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,557 DEBUG Processing 544/700 atomic regions from SNP 163122 to 163722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,715 DEBUG Processing 529/729 atomic regions from SNP 158527 to 159127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,743 DEBUG Processing 539/744 atomic regions from SNP 161496 to 162096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,774 DEBUG Processing 545/700 atomic regions from SNP 163422 to 164022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,985 DEBUG Processing 530/729 atomic regions from SNP 158827 to 159427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,994 DEBUG Processing 540/744 atomic regions from SNP 161796 to 162396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,996 DEBUG Processing 546/700 atomic regions from SNP 163722 to 164322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,217 DEBUG Processing 547/700 atomic regions from SNP 164022 to 164622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,224 DEBUG Processing 531/729 atomic regions from SNP 159127 to 159727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,248 DEBUG Processing 541/744 atomic regions from SNP 162096 to 162696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,442 DEBUG Processing 548/700 atomic regions from SNP 164322 to 164922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,469 DEBUG Processing 532/729 atomic regions from SNP 159427 to 160027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,484 DEBUG Processing 542/744 atomic regions from SNP 162396 to 162996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,670 DEBUG Processing 549/700 atomic regions from SNP 164622 to 165222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,707 DEBUG Processing 533/729 atomic regions from SNP 159727 to 160327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,718 DEBUG Processing 543/744 atomic regions from SNP 162696 to 163296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,919 DEBUG Processing 550/700 atomic regions from SNP 164922 to 165522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,948 DEBUG Processing 534/729 atomic regions from SNP 160027 to 160627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,955 DEBUG Processing 544/744 atomic regions from SNP 162996 to 163596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,159 DEBUG Processing 551/700 atomic regions from SNP 165222 to 165822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,188 DEBUG Processing 535/729 atomic regions from SNP 160327 to 160927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,193 DEBUG Processing 545/744 atomic regions from SNP 163296 to 163896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,375 DEBUG Processing 552/700 atomic regions from SNP 165522 to 166122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,431 DEBUG Processing 536/729 atomic regions from SNP 160627 to 161227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,434 DEBUG Processing 546/744 atomic regions from SNP 163596 to 164196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,590 DEBUG Processing 553/700 atomic regions from SNP 165822 to 166422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,669 DEBUG Processing 537/729 atomic regions from SNP 160927 to 161527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,680 DEBUG Processing 547/744 atomic regions from SNP 163896 to 164496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,808 DEBUG Processing 554/700 atomic regions from SNP 166122 to 166722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,914 DEBUG Processing 538/729 atomic regions from SNP 161227 to 161827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,930 DEBUG Processing 548/744 atomic regions from SNP 164196 to 164796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,026 DEBUG Processing 555/700 atomic regions from SNP 166422 to 167022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,158 DEBUG Processing 539/729 atomic regions from SNP 161527 to 162127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,170 DEBUG Processing 549/744 atomic regions from SNP 164496 to 165096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,244 DEBUG Processing 556/700 atomic regions from SNP 166722 to 167322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,403 DEBUG Processing 540/729 atomic regions from SNP 161827 to 162427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,413 DEBUG Processing 550/744 atomic regions from SNP 164796 to 165396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,473 DEBUG Processing 557/700 atomic regions from SNP 167022 to 167622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,637 DEBUG Processing 541/729 atomic regions from SNP 162127 to 162727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,650 DEBUG Processing 551/744 atomic regions from SNP 165096 to 165696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,710 DEBUG Processing 558/700 atomic regions from SNP 167322 to 167922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,875 DEBUG Processing 542/729 atomic regions from SNP 162427 to 163027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,885 DEBUG Processing 552/744 atomic regions from SNP 165396 to 165996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,943 DEBUG Processing 559/700 atomic regions from SNP 167622 to 168222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,117 DEBUG Processing 543/729 atomic regions from SNP 162727 to 163327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,121 DEBUG Processing 553/744 atomic regions from SNP 165696 to 166296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,171 DEBUG Processing 560/700 atomic regions from SNP 167922 to 168522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,355 DEBUG Processing 554/744 atomic regions from SNP 165996 to 166596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,357 DEBUG Processing 544/729 atomic regions from SNP 163027 to 163627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,396 DEBUG Processing 561/700 atomic regions from SNP 168222 to 168822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,590 DEBUG Processing 555/744 atomic regions from SNP 166296 to 166896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,596 DEBUG Processing 545/729 atomic regions from SNP 163327 to 163927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,626 DEBUG Processing 562/700 atomic regions from SNP 168522 to 169122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,825 DEBUG Processing 556/744 atomic regions from SNP 166596 to 167196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,836 DEBUG Processing 546/729 atomic regions from SNP 163627 to 164227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,854 DEBUG Processing 563/700 atomic regions from SNP 168822 to 169422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,005 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:22,007 DEBUG chr14: Signal quantile: 0.994. signal threshold: 16. Best RMSEA: 0.023 2025-01-31 09:51:22,060 DEBUG Processing 557/744 atomic regions from SNP 166896 to 167496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,072 DEBUG Processing 547/729 atomic regions from SNP 163927 to 164527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,081 DEBUG Processing 564/700 atomic regions from SNP 169122 to 169722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,292 DEBUG Processing 558/744 atomic regions from SNP 167196 to 167796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,306 DEBUG Processing 548/729 atomic regions from SNP 164227 to 164827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,309 DEBUG Processing 565/700 atomic regions from SNP 169422 to 170022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,525 DEBUG Processing 559/744 atomic regions from SNP 167496 to 168096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,545 DEBUG Processing 549/729 atomic regions from SNP 164527 to 165127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,547 DEBUG Processing 566/700 atomic regions from SNP 169722 to 170322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,766 DEBUG Processing 560/744 atomic regions from SNP 167796 to 168396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,777 DEBUG Processing 567/700 atomic regions from SNP 170022 to 170622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,783 DEBUG Processing 550/729 atomic regions from SNP 164827 to 165427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,003 DEBUG Processing 568/700 atomic regions from SNP 170322 to 170922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,021 DEBUG Processing 551/729 atomic regions from SNP 165127 to 165727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,031 DEBUG Processing 561/744 atomic regions from SNP 168096 to 168696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,231 DEBUG Processing 569/700 atomic regions from SNP 170622 to 171222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,260 DEBUG Processing 552/729 atomic regions from SNP 165427 to 166027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,266 DEBUG Processing 562/744 atomic regions from SNP 168396 to 168996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,463 DEBUG Processing 570/700 atomic regions from SNP 170922 to 171522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,496 DEBUG Processing 553/729 atomic regions from SNP 165727 to 166327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,504 DEBUG Processing 563/744 atomic regions from SNP 168696 to 169296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,689 DEBUG Processing 571/700 atomic regions from SNP 171222 to 171822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,735 DEBUG Processing 554/729 atomic regions from SNP 166027 to 166627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,738 DEBUG Processing 564/744 atomic regions from SNP 168996 to 169596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,915 DEBUG Processing 572/700 atomic regions from SNP 171522 to 172122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,976 DEBUG Processing 565/744 atomic regions from SNP 169296 to 169896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,977 DEBUG Processing 555/729 atomic regions from SNP 166327 to 166927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,144 DEBUG Processing 573/700 atomic regions from SNP 171822 to 172422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,203 DEBUG chr14 total SNP count: 198488 2025-01-31 09:51:24,203 DEBUG chr14 length: 124902244 2025-01-31 09:51:24,203 DEBUG ----------------------------------------- 2025-01-31 09:51:24,203 INFO Processing SNPs in chr14 2025-01-31 09:51:24,216 DEBUG Processing 566/744 atomic regions from SNP 169596 to 170196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,219 DEBUG Processing 556/729 atomic regions from SNP 166627 to 167227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,369 DEBUG Processing 574/700 atomic regions from SNP 172122 to 172722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,452 DEBUG Processing 567/744 atomic regions from SNP 169896 to 170496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,457 DEBUG Processing 557/729 atomic regions from SNP 166927 to 167527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,507 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 148), (148, 198488)] 2025-01-31 09:51:24,590 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:24,592 DEBUG Processing 575/700 atomic regions from SNP 172422 to 173022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,609 DEBUG Segmenting atomic regions: 2025-01-31 09:51:24,690 DEBUG Processing 568/744 atomic regions from SNP 170196 to 170796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,692 DEBUG Processing 1/1 atomic regions from SNP 0 to 147 for chr14 (subchromosome 1 of 2). 2025-01-31 09:51:24,696 DEBUG Processing 558/729 atomic regions from SNP 167227 to 167827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,699 DEBUG Unique SNPs positions in subchromosome 1: 148 2025-01-31 09:51:24,700 DEBUG Subchromosome time: 0.10965109802782536, subchromosome SNPs: 148 2025-01-31 09:51:24,750 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:51:24,815 DEBUG Processing 576/700 atomic regions from SNP 172722 to 173322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,927 DEBUG Processing 569/744 atomic regions from SNP 170496 to 171096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,936 DEBUG Processing 559/729 atomic regions from SNP 167527 to 168127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,039 DEBUG Processing 577/700 atomic regions from SNP 173022 to 173622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,158 DEBUG Processing 570/744 atomic regions from SNP 170796 to 171396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,169 DEBUG Processing 560/729 atomic regions from SNP 167827 to 168427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,266 DEBUG Processing 578/700 atomic regions from SNP 173322 to 173922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,387 DEBUG Processing 571/744 atomic regions from SNP 171096 to 171696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,400 DEBUG Processing 561/729 atomic regions from SNP 168127 to 168727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,505 DEBUG Processing 579/700 atomic regions from SNP 173622 to 174222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,615 DEBUG Processing 572/744 atomic regions from SNP 171396 to 171996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,630 DEBUG Processing 562/729 atomic regions from SNP 168427 to 169027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,737 DEBUG Processing 580/700 atomic regions from SNP 173922 to 174522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,846 DEBUG Processing 573/744 atomic regions from SNP 171696 to 172296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,863 DEBUG Processing 563/729 atomic regions from SNP 168727 to 169327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,973 DEBUG Processing 581/700 atomic regions from SNP 174222 to 174822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,079 DEBUG Processing 574/744 atomic regions from SNP 171996 to 172596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,096 DEBUG Processing 564/729 atomic regions from SNP 169027 to 169627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,207 DEBUG Processing 582/700 atomic regions from SNP 174522 to 175122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,314 DEBUG Processing 575/744 atomic regions from SNP 172296 to 172896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,334 DEBUG Processing 565/729 atomic regions from SNP 169327 to 169927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,442 DEBUG Processing 583/700 atomic regions from SNP 174822 to 175422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,555 DEBUG Processing 576/744 atomic regions from SNP 172596 to 173196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,575 DEBUG Processing 566/729 atomic regions from SNP 169627 to 170227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,691 DEBUG Processing 584/700 atomic regions from SNP 175122 to 175722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,791 DEBUG Processing 577/744 atomic regions from SNP 172896 to 173496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,817 DEBUG Processing 567/729 atomic regions from SNP 169927 to 170527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,946 DEBUG Processing 585/700 atomic regions from SNP 175422 to 176022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,028 DEBUG Processing 578/744 atomic regions from SNP 173196 to 173796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,056 DEBUG Processing 568/729 atomic regions from SNP 170227 to 170827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,193 DEBUG Processing 586/700 atomic regions from SNP 175722 to 176322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,271 DEBUG Processing 579/744 atomic regions from SNP 173496 to 174096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,298 DEBUG Processing 569/729 atomic regions from SNP 170527 to 171127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,447 DEBUG Processing 587/700 atomic regions from SNP 176022 to 176622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,516 DEBUG Processing 580/744 atomic regions from SNP 173796 to 174396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,548 DEBUG Processing 570/729 atomic regions from SNP 170827 to 171427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,700 DEBUG Processing 588/700 atomic regions from SNP 176322 to 176922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,756 DEBUG Processing 581/744 atomic regions from SNP 174096 to 174696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,792 DEBUG Processing 571/729 atomic regions from SNP 171127 to 171727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,952 DEBUG Processing 589/700 atomic regions from SNP 176622 to 177222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,996 DEBUG Processing 582/744 atomic regions from SNP 174396 to 174996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,039 DEBUG Processing 572/729 atomic regions from SNP 171427 to 172027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,214 DEBUG Processing 590/700 atomic regions from SNP 176922 to 177522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,239 DEBUG Processing 583/744 atomic regions from SNP 174696 to 175296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,288 DEBUG Processing 573/729 atomic regions from SNP 171727 to 172327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,470 DEBUG Processing 591/700 atomic regions from SNP 177222 to 177822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,483 DEBUG Processing 584/744 atomic regions from SNP 174996 to 175596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,536 DEBUG Processing 574/729 atomic regions from SNP 172027 to 172627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,724 DEBUG Processing 592/700 atomic regions from SNP 177522 to 178122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,725 DEBUG Processing 585/744 atomic regions from SNP 175296 to 175896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,778 DEBUG Processing 575/729 atomic regions from SNP 172327 to 172927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,967 DEBUG Processing 586/744 atomic regions from SNP 175596 to 176196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,984 DEBUG Processing 593/700 atomic regions from SNP 177822 to 178422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,022 DEBUG Processing 576/729 atomic regions from SNP 172627 to 173227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,203 DEBUG Processing 587/744 atomic regions from SNP 175896 to 176496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,242 DEBUG Processing 594/700 atomic regions from SNP 178122 to 178722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,263 DEBUG Processing 577/729 atomic regions from SNP 172927 to 173527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,445 DEBUG Processing 588/744 atomic regions from SNP 176196 to 176796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,475 DEBUG Processing 595/700 atomic regions from SNP 178422 to 179022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,506 DEBUG Processing 578/729 atomic regions from SNP 173227 to 173827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,688 DEBUG Processing 589/744 atomic regions from SNP 176496 to 177096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,715 DEBUG Processing 596/700 atomic regions from SNP 178722 to 179322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,773 DEBUG Processing 579/729 atomic regions from SNP 173527 to 174127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,931 DEBUG Processing 590/744 atomic regions from SNP 176796 to 177396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,965 DEBUG Processing 597/700 atomic regions from SNP 179022 to 179622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,026 DEBUG Processing 580/729 atomic regions from SNP 173827 to 174427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,176 DEBUG Processing 591/744 atomic regions from SNP 177096 to 177696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,209 DEBUG Processing 598/700 atomic regions from SNP 179322 to 179922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,263 DEBUG Processing 581/729 atomic regions from SNP 174127 to 174727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,427 DEBUG Processing 592/744 atomic regions from SNP 177396 to 177996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,463 DEBUG Processing 599/700 atomic regions from SNP 179622 to 180222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,502 DEBUG Processing 582/729 atomic regions from SNP 174427 to 175027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,670 DEBUG Processing 593/744 atomic regions from SNP 177696 to 178296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,695 DEBUG Processing 600/700 atomic regions from SNP 179922 to 180522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,773 DEBUG Processing 583/729 atomic regions from SNP 174727 to 175327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,903 DEBUG Processing 594/744 atomic regions from SNP 177996 to 178596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,919 DEBUG Processing 601/700 atomic regions from SNP 180222 to 180822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,043 DEBUG Processing 584/729 atomic regions from SNP 175027 to 175627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,138 DEBUG Processing 595/744 atomic regions from SNP 178296 to 178896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,147 DEBUG Processing 602/700 atomic regions from SNP 180522 to 181122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,329 DEBUG Processing 585/729 atomic regions from SNP 175327 to 175927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,364 DEBUG Processing 603/700 atomic regions from SNP 180822 to 181422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,375 DEBUG Processing 596/744 atomic regions from SNP 178596 to 179196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,584 DEBUG Processing 604/700 atomic regions from SNP 181122 to 181722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,609 DEBUG Processing 586/729 atomic regions from SNP 175627 to 176227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,615 DEBUG Processing 597/744 atomic regions from SNP 178896 to 179496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,807 DEBUG Processing 605/700 atomic regions from SNP 181422 to 182022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,858 DEBUG Processing 598/744 atomic regions from SNP 179196 to 179796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,889 DEBUG Processing 587/729 atomic regions from SNP 175927 to 176527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,025 DEBUG Processing 606/700 atomic regions from SNP 181722 to 182322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,104 DEBUG Processing 599/744 atomic regions from SNP 179496 to 180096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,173 DEBUG Processing 588/729 atomic regions from SNP 176227 to 176827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,253 DEBUG Processing 607/700 atomic regions from SNP 182022 to 182622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,368 DEBUG Processing 600/744 atomic regions from SNP 179796 to 180396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,468 DEBUG Processing 589/729 atomic regions from SNP 176527 to 177127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,492 DEBUG Processing 608/700 atomic regions from SNP 182322 to 182922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,635 DEBUG Processing 601/744 atomic regions from SNP 180096 to 180696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,740 DEBUG Processing 609/700 atomic regions from SNP 182622 to 183222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,756 DEBUG Processing 590/729 atomic regions from SNP 176827 to 177427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,908 DEBUG Processing 602/744 atomic regions from SNP 180396 to 180996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,012 DEBUG Processing 610/700 atomic regions from SNP 182922 to 183522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,051 DEBUG Processing 591/729 atomic regions from SNP 177127 to 177727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,172 DEBUG Processing 603/744 atomic regions from SNP 180696 to 181296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,273 DEBUG Processing 611/700 atomic regions from SNP 183222 to 183822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,326 DEBUG Processing 592/729 atomic regions from SNP 177427 to 178027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,431 DEBUG Processing 604/744 atomic regions from SNP 180996 to 181596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,528 DEBUG Processing 612/700 atomic regions from SNP 183522 to 184122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,614 DEBUG Processing 593/729 atomic regions from SNP 177727 to 178327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,684 DEBUG Processing 605/744 atomic regions from SNP 181296 to 181896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,761 DEBUG Processing 613/700 atomic regions from SNP 183822 to 184422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,909 DEBUG Processing 594/729 atomic regions from SNP 178027 to 178627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,940 DEBUG Processing 606/744 atomic regions from SNP 181596 to 182196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,984 DEBUG Processing 614/700 atomic regions from SNP 184122 to 184722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,175 DEBUG Processing 595/729 atomic regions from SNP 178327 to 178927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,182 DEBUG Processing 607/744 atomic regions from SNP 181896 to 182496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,205 DEBUG Processing 615/700 atomic regions from SNP 184422 to 185022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,424 DEBUG Processing 608/744 atomic regions from SNP 182196 to 182796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,433 DEBUG Processing 616/700 atomic regions from SNP 184722 to 185322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,443 DEBUG Processing 596/729 atomic regions from SNP 178627 to 179227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,657 DEBUG Processing 617/700 atomic regions from SNP 185022 to 185622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,662 DEBUG Processing 609/744 atomic regions from SNP 182496 to 183096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,707 DEBUG Processing 597/729 atomic regions from SNP 178927 to 179527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,877 DEBUG Processing 618/700 atomic regions from SNP 185322 to 185922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,898 DEBUG Processing 610/744 atomic regions from SNP 182796 to 183396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,953 DEBUG Processing 598/729 atomic regions from SNP 179227 to 179827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,092 DEBUG Processing 619/700 atomic regions from SNP 185622 to 186222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,130 DEBUG Processing 611/744 atomic regions from SNP 183096 to 183696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,190 DEBUG Processing 599/729 atomic regions from SNP 179527 to 180127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,311 DEBUG Processing 620/700 atomic regions from SNP 185922 to 186522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,365 DEBUG Processing 612/744 atomic regions from SNP 183396 to 183996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,431 DEBUG Processing 600/729 atomic regions from SNP 179827 to 180427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,532 DEBUG Processing 621/700 atomic regions from SNP 186222 to 186822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,610 DEBUG Processing 613/744 atomic regions from SNP 183696 to 184296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,683 DEBUG Processing 601/729 atomic regions from SNP 180127 to 180727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,756 DEBUG Processing 622/700 atomic regions from SNP 186522 to 187122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,862 DEBUG Processing 614/744 atomic regions from SNP 183996 to 184596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,939 DEBUG Processing 602/729 atomic regions from SNP 180427 to 181027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,994 DEBUG Processing 623/700 atomic regions from SNP 186822 to 187422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,108 DEBUG Processing 615/744 atomic regions from SNP 184296 to 184896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,201 DEBUG Processing 603/729 atomic regions from SNP 180727 to 181327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,246 DEBUG Processing 624/700 atomic regions from SNP 187122 to 187722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,346 DEBUG Processing 616/744 atomic regions from SNP 184596 to 185196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,462 DEBUG Processing 604/729 atomic regions from SNP 181027 to 181627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,505 DEBUG Processing 625/700 atomic regions from SNP 187422 to 188022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,596 DEBUG Processing 617/744 atomic regions from SNP 184896 to 185496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,729 DEBUG Processing 605/729 atomic regions from SNP 181327 to 181927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,804 DEBUG Processing 626/700 atomic regions from SNP 187722 to 188322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,892 DEBUG Processing 618/744 atomic regions from SNP 185196 to 185796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,004 DEBUG Processing 606/729 atomic regions from SNP 181627 to 182227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,049 DEBUG Processing 627/700 atomic regions from SNP 188022 to 188622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,144 DEBUG Processing 619/744 atomic regions from SNP 185496 to 186096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,255 DEBUG Processing 607/729 atomic regions from SNP 181927 to 182527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,273 DEBUG Processing 628/700 atomic regions from SNP 188322 to 188922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,396 DEBUG Processing 620/744 atomic regions from SNP 185796 to 186396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,519 DEBUG Processing 608/729 atomic regions from SNP 182227 to 182827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,520 DEBUG Processing 629/700 atomic regions from SNP 188622 to 189222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,649 DEBUG Processing 621/744 atomic regions from SNP 186096 to 186696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,782 DEBUG Processing 609/729 atomic regions from SNP 182527 to 183127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,790 DEBUG Processing 630/700 atomic regions from SNP 188922 to 189522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,891 DEBUG Processing 622/744 atomic regions from SNP 186396 to 186996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,039 DEBUG Processing 631/700 atomic regions from SNP 189222 to 189822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,053 DEBUG Processing 610/729 atomic regions from SNP 182827 to 183427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,134 DEBUG Processing 623/744 atomic regions from SNP 186696 to 187296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,289 DEBUG Processing 632/700 atomic regions from SNP 189522 to 190122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,341 DEBUG Processing 611/729 atomic regions from SNP 183127 to 183727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,379 DEBUG Processing 624/744 atomic regions from SNP 186996 to 187596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,530 DEBUG Processing 633/700 atomic regions from SNP 189822 to 190422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,606 DEBUG Processing 612/729 atomic regions from SNP 183427 to 184027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,640 DEBUG Processing 625/744 atomic regions from SNP 187296 to 187896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,771 DEBUG Processing 634/700 atomic regions from SNP 190122 to 190722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,861 DEBUG Processing 613/729 atomic regions from SNP 183727 to 184327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,894 DEBUG Processing 626/744 atomic regions from SNP 187596 to 188196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,014 DEBUG Processing 635/700 atomic regions from SNP 190422 to 191022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,118 DEBUG Processing 614/729 atomic regions from SNP 184027 to 184627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,149 DEBUG Processing 627/744 atomic regions from SNP 187896 to 188496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,252 DEBUG Processing 636/700 atomic regions from SNP 190722 to 191322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,367 DEBUG Processing 615/729 atomic regions from SNP 184327 to 184927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,395 DEBUG Processing 628/744 atomic regions from SNP 188196 to 188796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,495 DEBUG Processing 637/700 atomic regions from SNP 191022 to 191622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,628 DEBUG Processing 616/729 atomic regions from SNP 184627 to 185227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,648 DEBUG Processing 629/744 atomic regions from SNP 188496 to 189096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,726 DEBUG Processing 638/700 atomic regions from SNP 191322 to 191922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,908 DEBUG Processing 630/744 atomic regions from SNP 188796 to 189396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,909 DEBUG Processing 617/729 atomic regions from SNP 184927 to 185527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,975 DEBUG Processing 639/700 atomic regions from SNP 191622 to 192222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,182 DEBUG Processing 631/744 atomic regions from SNP 189096 to 189696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,205 DEBUG Processing 618/729 atomic regions from SNP 185227 to 185827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,221 DEBUG Processing 640/700 atomic regions from SNP 191922 to 192522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,502 DEBUG Processing 632/744 atomic regions from SNP 189396 to 189996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,510 DEBUG Processing 641/700 atomic regions from SNP 192222 to 192822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,552 DEBUG Processing 619/729 atomic regions from SNP 185527 to 186127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,759 DEBUG Processing 642/700 atomic regions from SNP 192522 to 193122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,759 DEBUG Processing 633/744 atomic regions from SNP 189696 to 190296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,838 DEBUG Processing 620/729 atomic regions from SNP 185827 to 186427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,013 DEBUG Processing 634/744 atomic regions from SNP 189996 to 190596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,015 DEBUG Processing 643/700 atomic regions from SNP 192822 to 193422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,117 DEBUG Processing 621/729 atomic regions from SNP 186127 to 186727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,251 DEBUG Processing 644/700 atomic regions from SNP 193122 to 193722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,267 DEBUG Processing 635/744 atomic regions from SNP 190296 to 190896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,407 DEBUG Processing 622/729 atomic regions from SNP 186427 to 187027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,488 DEBUG Processing 645/700 atomic regions from SNP 193422 to 194022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,526 DEBUG Processing 636/744 atomic regions from SNP 190596 to 191196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,703 DEBUG Processing 623/729 atomic regions from SNP 186727 to 187327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,730 DEBUG Processing 646/700 atomic regions from SNP 193722 to 194322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,789 DEBUG Processing 637/744 atomic regions from SNP 190896 to 191496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,963 DEBUG Processing 647/700 atomic regions from SNP 194022 to 194622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,984 DEBUG Processing 624/729 atomic regions from SNP 187027 to 187627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,048 DEBUG Processing 638/744 atomic regions from SNP 191196 to 191796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,186 DEBUG Processing 648/700 atomic regions from SNP 194322 to 194922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,264 DEBUG Processing 625/729 atomic regions from SNP 187327 to 187927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,315 DEBUG Processing 639/744 atomic regions from SNP 191496 to 192096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,414 DEBUG Processing 649/700 atomic regions from SNP 194622 to 195222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,524 DEBUG Processing 626/729 atomic regions from SNP 187627 to 188227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,575 DEBUG Processing 640/744 atomic regions from SNP 191796 to 192396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,646 DEBUG Processing 650/700 atomic regions from SNP 194922 to 195522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,776 DEBUG Processing 627/729 atomic regions from SNP 187927 to 188527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,832 DEBUG Processing 641/744 atomic regions from SNP 192096 to 192696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,877 DEBUG Processing 651/700 atomic regions from SNP 195222 to 195822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,033 DEBUG Processing 628/729 atomic regions from SNP 188227 to 188827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,098 DEBUG Processing 642/744 atomic regions from SNP 192396 to 192996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,119 DEBUG Processing 652/700 atomic regions from SNP 195522 to 196122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,288 DEBUG Processing 629/729 atomic regions from SNP 188527 to 189127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,353 DEBUG Processing 643/744 atomic regions from SNP 192696 to 193296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,357 DEBUG Processing 653/700 atomic regions from SNP 195822 to 196422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,539 DEBUG Processing 630/729 atomic regions from SNP 188827 to 189427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,584 DEBUG Processing 654/700 atomic regions from SNP 196122 to 196722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,604 DEBUG Processing 644/744 atomic regions from SNP 192996 to 193596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,800 DEBUG Processing 631/729 atomic regions from SNP 189127 to 189727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,814 DEBUG Processing 655/700 atomic regions from SNP 196422 to 197022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,861 DEBUG Processing 645/744 atomic regions from SNP 193296 to 193896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,044 DEBUG Processing 656/700 atomic regions from SNP 196722 to 197322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,045 DEBUG Processing 632/729 atomic regions from SNP 189427 to 190027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,102 DEBUG Processing 646/744 atomic regions from SNP 193596 to 194196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,269 DEBUG Processing 657/700 atomic regions from SNP 197022 to 197622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,289 DEBUG Processing 633/729 atomic regions from SNP 189727 to 190327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,351 DEBUG Processing 647/744 atomic regions from SNP 193896 to 194496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,501 DEBUG Processing 658/700 atomic regions from SNP 197322 to 197922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,532 DEBUG Processing 634/729 atomic regions from SNP 190027 to 190627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,600 DEBUG Processing 648/744 atomic regions from SNP 194196 to 194796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,730 DEBUG Processing 659/700 atomic regions from SNP 197622 to 198222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,772 DEBUG Processing 635/729 atomic regions from SNP 190327 to 190927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,847 DEBUG Processing 649/744 atomic regions from SNP 194496 to 195096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,961 DEBUG Processing 660/700 atomic regions from SNP 197922 to 198522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,015 DEBUG Processing 636/729 atomic regions from SNP 190627 to 191227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,098 DEBUG Processing 650/744 atomic regions from SNP 194796 to 195396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,194 DEBUG Processing 661/700 atomic regions from SNP 198222 to 198822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,259 DEBUG Processing 637/729 atomic regions from SNP 190927 to 191527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,344 DEBUG Processing 651/744 atomic regions from SNP 195096 to 195696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,448 DEBUG Processing 662/700 atomic regions from SNP 198522 to 199122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,514 DEBUG Processing 638/729 atomic regions from SNP 191227 to 191827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,599 DEBUG Processing 652/744 atomic regions from SNP 195396 to 195996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,691 DEBUG Processing 663/700 atomic regions from SNP 198822 to 199422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,759 DEBUG Processing 639/729 atomic regions from SNP 191527 to 192127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,845 DEBUG Processing 653/744 atomic regions from SNP 195696 to 196296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,927 DEBUG Processing 664/700 atomic regions from SNP 199122 to 199722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,005 DEBUG Processing 640/729 atomic regions from SNP 191827 to 192427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,099 DEBUG Processing 654/744 atomic regions from SNP 195996 to 196596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,165 DEBUG Processing 665/700 atomic regions from SNP 199422 to 200022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,252 DEBUG Processing 641/729 atomic regions from SNP 192127 to 192727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,369 DEBUG Processing 655/744 atomic regions from SNP 196296 to 196896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,399 DEBUG Processing 666/700 atomic regions from SNP 199722 to 200322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,496 DEBUG Processing 642/729 atomic regions from SNP 192427 to 193027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,620 DEBUG Processing 656/744 atomic regions from SNP 196596 to 197196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,631 DEBUG Processing 667/700 atomic regions from SNP 200022 to 200622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,749 DEBUG Processing 643/729 atomic regions from SNP 192727 to 193327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,860 DEBUG Processing 657/744 atomic regions from SNP 196896 to 197496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,860 DEBUG Processing 668/700 atomic regions from SNP 200322 to 200922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,003 DEBUG Processing 644/729 atomic regions from SNP 193027 to 193627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,101 DEBUG Processing 669/700 atomic regions from SNP 200622 to 201222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,104 DEBUG Processing 658/744 atomic regions from SNP 197196 to 197796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,252 DEBUG Processing 645/729 atomic regions from SNP 193327 to 193927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,341 DEBUG Processing 659/744 atomic regions from SNP 197496 to 198096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,356 DEBUG Processing 670/700 atomic regions from SNP 200922 to 201522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,509 DEBUG Processing 646/729 atomic regions from SNP 193627 to 194227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,586 DEBUG Processing 660/744 atomic regions from SNP 197796 to 198396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,593 DEBUG Processing 671/700 atomic regions from SNP 201222 to 201822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,765 DEBUG Processing 647/729 atomic regions from SNP 193927 to 194527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,823 DEBUG Processing 672/700 atomic regions from SNP 201522 to 202122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,834 DEBUG Processing 661/744 atomic regions from SNP 198096 to 198696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,020 DEBUG Processing 648/729 atomic regions from SNP 194227 to 194827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,067 DEBUG Processing 673/700 atomic regions from SNP 201822 to 202422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,085 DEBUG Processing 662/744 atomic regions from SNP 198396 to 198996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,269 DEBUG Processing 649/729 atomic regions from SNP 194527 to 195127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,331 DEBUG Processing 663/744 atomic regions from SNP 198696 to 199296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,338 DEBUG Processing 674/700 atomic regions from SNP 202122 to 202722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,369 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:51:48,517 DEBUG Processing 650/729 atomic regions from SNP 194827 to 195427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,584 DEBUG Processing 664/744 atomic regions from SNP 198996 to 199596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,598 DEBUG Processing 675/700 atomic regions from SNP 202422 to 203022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,767 DEBUG Processing 651/729 atomic regions from SNP 195127 to 195727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,841 DEBUG Segmenting atomic regions: 2025-01-31 09:51:48,860 DEBUG Processing 665/744 atomic regions from SNP 199296 to 199896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,870 DEBUG Processing 676/700 atomic regions from SNP 202722 to 203322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,928 DEBUG Processing 1/660 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,029 DEBUG Processing 652/729 atomic regions from SNP 195427 to 196027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,207 DEBUG Processing 666/744 atomic regions from SNP 199596 to 200196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,250 DEBUG Processing 677/700 atomic regions from SNP 203022 to 203622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,253 DEBUG Processing 2/660 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,387 DEBUG Processing 653/729 atomic regions from SNP 195727 to 196327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,529 DEBUG Processing 667/744 atomic regions from SNP 199896 to 200496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,541 DEBUG Processing 3/660 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,588 DEBUG Processing 678/700 atomic regions from SNP 203322 to 203922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,714 DEBUG Processing 654/729 atomic regions from SNP 196027 to 196627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,810 DEBUG Processing 4/660 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:49,851 DEBUG Processing 668/744 atomic regions from SNP 200196 to 200796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,939 DEBUG Processing 679/700 atomic regions from SNP 203622 to 204222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,018 DEBUG Processing 655/729 atomic regions from SNP 196327 to 196927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,043 DEBUG Processing 5/660 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,128 DEBUG Processing 669/744 atomic regions from SNP 200496 to 201096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,214 DEBUG Processing 680/700 atomic regions from SNP 203922 to 204522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,269 DEBUG Processing 6/660 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,308 DEBUG Processing 656/729 atomic regions from SNP 196627 to 197227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,402 DEBUG Processing 670/744 atomic regions from SNP 200796 to 201396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,471 DEBUG Processing 681/700 atomic regions from SNP 204222 to 204822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,485 DEBUG Processing 7/660 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,595 DEBUG Processing 657/729 atomic regions from SNP 196927 to 197527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,672 DEBUG Processing 671/744 atomic regions from SNP 201096 to 201696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,698 DEBUG Processing 8/660 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,725 DEBUG Processing 682/700 atomic regions from SNP 204522 to 205122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,866 DEBUG Processing 658/729 atomic regions from SNP 197227 to 197827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,918 DEBUG Processing 9/660 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:50,927 DEBUG Processing 672/744 atomic regions from SNP 201396 to 201996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,986 DEBUG Processing 683/700 atomic regions from SNP 204822 to 205422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,135 DEBUG Processing 659/729 atomic regions from SNP 197527 to 198127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,142 DEBUG Processing 10/660 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,191 DEBUG Processing 673/744 atomic regions from SNP 201696 to 202296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,260 DEBUG Processing 684/700 atomic regions from SNP 205122 to 205722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,368 DEBUG Processing 11/660 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,407 DEBUG Processing 660/729 atomic regions from SNP 197827 to 198427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,456 DEBUG Processing 674/744 atomic regions from SNP 201996 to 202596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,520 DEBUG Processing 685/700 atomic regions from SNP 205422 to 206022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,619 DEBUG Processing 12/660 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:51,718 DEBUG Processing 661/729 atomic regions from SNP 198127 to 198727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,778 DEBUG Processing 675/744 atomic regions from SNP 202296 to 202896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,815 DEBUG Processing 686/700 atomic regions from SNP 205722 to 206322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,915 DEBUG Processing 13/660 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,121 DEBUG Processing 662/729 atomic regions from SNP 198427 to 199027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,214 DEBUG Processing 687/700 atomic regions from SNP 206022 to 206622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,217 DEBUG Processing 14/660 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,217 DEBUG Processing 676/744 atomic regions from SNP 202596 to 203196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,570 DEBUG Processing 663/729 atomic regions from SNP 198727 to 199327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,586 DEBUG Processing 15/660 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,619 DEBUG Processing 688/700 atomic regions from SNP 206322 to 206922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,631 DEBUG Processing 677/744 atomic regions from SNP 202896 to 203496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,844 DEBUG Processing 16/660 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:52,877 DEBUG Processing 664/729 atomic regions from SNP 199027 to 199627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,896 DEBUG Processing 689/700 atomic regions from SNP 206622 to 207222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,947 DEBUG Processing 678/744 atomic regions from SNP 203196 to 203796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,061 DEBUG Processing 17/660 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,140 DEBUG Processing 690/700 atomic regions from SNP 206922 to 207522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,164 DEBUG Processing 665/729 atomic regions from SNP 199327 to 199927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,208 DEBUG Processing 679/744 atomic regions from SNP 203496 to 204096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,280 DEBUG Processing 18/660 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,398 DEBUG Processing 691/700 atomic regions from SNP 207222 to 207822 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,425 DEBUG Processing 666/729 atomic regions from SNP 199627 to 200227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,463 DEBUG Processing 680/744 atomic regions from SNP 203796 to 204396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,490 DEBUG Processing 19/660 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,657 DEBUG Processing 692/700 atomic regions from SNP 207522 to 208122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,687 DEBUG Processing 667/729 atomic regions from SNP 199927 to 200527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,708 DEBUG Processing 20/660 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,723 DEBUG Processing 681/744 atomic regions from SNP 204096 to 204696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,930 DEBUG Processing 693/700 atomic regions from SNP 207822 to 208422 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,952 DEBUG Processing 21/660 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:53,969 DEBUG Processing 668/729 atomic regions from SNP 200227 to 200827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,018 DEBUG Processing 682/744 atomic regions from SNP 204396 to 204996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,169 DEBUG Processing 694/700 atomic regions from SNP 208122 to 208722 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,170 DEBUG Processing 22/660 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,248 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:51:54,277 DEBUG Processing 669/729 atomic regions from SNP 200527 to 201127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,291 DEBUG Processing 683/744 atomic regions from SNP 204696 to 205296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,414 DEBUG Processing 695/700 atomic regions from SNP 208422 to 209022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,423 DEBUG Processing 23/660 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,577 DEBUG Processing 684/744 atomic regions from SNP 204996 to 205596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,591 DEBUG Processing 670/729 atomic regions from SNP 200827 to 201427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,650 DEBUG Processing 24/660 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,662 DEBUG Processing 696/700 atomic regions from SNP 208722 to 209322 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,839 DEBUG Processing 685/744 atomic regions from SNP 205296 to 205896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,869 DEBUG Processing 25/660 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:54,901 DEBUG Processing 697/700 atomic regions from SNP 209022 to 209622 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,901 DEBUG Processing 671/729 atomic regions from SNP 201127 to 201727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,094 DEBUG Processing 26/660 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,100 DEBUG Processing 686/744 atomic regions from SNP 205596 to 206196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,152 DEBUG Processing 698/700 atomic regions from SNP 209322 to 209922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,203 DEBUG Processing 672/729 atomic regions from SNP 201427 to 202027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,316 DEBUG Processing 27/660 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,362 DEBUG Processing 687/744 atomic regions from SNP 205896 to 206496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,395 DEBUG Processing 699/700 atomic regions from SNP 209622 to 210222 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,497 DEBUG Processing 673/729 atomic regions from SNP 201727 to 202327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,527 DEBUG Processing 28/660 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,619 DEBUG Processing 688/744 atomic regions from SNP 206196 to 206796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,642 DEBUG Processing 700/700 atomic regions from SNP 209922 to 210522 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,740 DEBUG Processing 29/660 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:55,787 DEBUG Processing 674/729 atomic regions from SNP 202027 to 202627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,788 DEBUG Unique SNPs positions in subchromosome 3: 210523 2025-01-31 09:51:55,876 DEBUG Processing 689/744 atomic regions from SNP 206496 to 207096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,949 DEBUG Processing 30/660 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,058 DEBUG Processing 675/729 atomic regions from SNP 202327 to 202927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,114 DEBUG Processing 690/744 atomic regions from SNP 206796 to 207396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,159 DEBUG Processing 31/660 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,349 DEBUG Processing 676/729 atomic regions from SNP 202627 to 203227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,366 DEBUG Processing 691/744 atomic regions from SNP 207096 to 207696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,369 DEBUG Processing 32/660 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,587 DEBUG Processing 33/660 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,614 DEBUG Processing 692/744 atomic regions from SNP 207396 to 207996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,637 DEBUG Processing 677/729 atomic regions from SNP 202927 to 203527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,794 DEBUG Processing 34/660 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:56,854 DEBUG Processing 693/744 atomic regions from SNP 207696 to 208296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,916 DEBUG Processing 678/729 atomic regions from SNP 203227 to 203827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,008 DEBUG Processing 35/660 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,106 DEBUG Processing 694/744 atomic regions from SNP 207996 to 208596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,193 DEBUG Processing 679/729 atomic regions from SNP 203527 to 204127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,225 DEBUG Processing 36/660 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,364 DEBUG Processing 695/744 atomic regions from SNP 208296 to 208896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,445 DEBUG Processing 37/660 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,466 DEBUG Processing 680/729 atomic regions from SNP 203827 to 204427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,622 DEBUG Processing 696/744 atomic regions from SNP 208596 to 209196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,664 DEBUG Processing 38/660 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:57,738 DEBUG Processing 681/729 atomic regions from SNP 204127 to 204727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,878 DEBUG Processing 697/744 atomic regions from SNP 208896 to 209496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,887 DEBUG Processing 39/660 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,005 DEBUG Processing 682/729 atomic regions from SNP 204427 to 205027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,122 DEBUG Processing 40/660 atomic regions from SNP 11739 to 12339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,135 DEBUG Processing 698/744 atomic regions from SNP 209196 to 209796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,279 DEBUG Processing 683/729 atomic regions from SNP 204727 to 205327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,339 DEBUG Processing 41/660 atomic regions from SNP 12039 to 12639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,385 DEBUG Processing 699/744 atomic regions from SNP 209496 to 210096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,548 DEBUG Processing 42/660 atomic regions from SNP 12339 to 12939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,558 DEBUG Processing 684/729 atomic regions from SNP 205027 to 205627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,660 DEBUG Processing 700/744 atomic regions from SNP 209796 to 210396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,755 DEBUG Processing 43/660 atomic regions from SNP 12639 to 13239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:58,831 DEBUG Processing 685/729 atomic regions from SNP 205327 to 205927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,921 DEBUG Processing 701/744 atomic regions from SNP 210096 to 210696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,966 DEBUG Processing 44/660 atomic regions from SNP 12939 to 13539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,104 DEBUG Processing 686/729 atomic regions from SNP 205627 to 206227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,178 DEBUG Processing 45/660 atomic regions from SNP 13239 to 13839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,182 DEBUG Processing 702/744 atomic regions from SNP 210396 to 210996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,375 DEBUG Processing 687/729 atomic regions from SNP 205927 to 206527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,390 DEBUG Processing 46/660 atomic regions from SNP 13539 to 14139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,440 DEBUG Processing 703/744 atomic regions from SNP 210696 to 211296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,601 DEBUG Processing 47/660 atomic regions from SNP 13839 to 14439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,652 DEBUG Processing 688/729 atomic regions from SNP 206227 to 206827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,692 DEBUG Processing 704/744 atomic regions from SNP 210996 to 211596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,811 DEBUG Processing 48/660 atomic regions from SNP 14139 to 14739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:51:59,945 DEBUG Processing 705/744 atomic regions from SNP 211296 to 211896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,947 DEBUG Processing 689/729 atomic regions from SNP 206527 to 207127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,014 DEBUG Processing 49/660 atomic regions from SNP 14439 to 15039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,193 DEBUG Processing 706/744 atomic regions from SNP 211596 to 212196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,226 DEBUG Processing 50/660 atomic regions from SNP 14739 to 15339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,235 DEBUG Processing 690/729 atomic regions from SNP 206827 to 207427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,437 DEBUG Processing 51/660 atomic regions from SNP 15039 to 15639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,438 DEBUG Processing 707/744 atomic regions from SNP 211896 to 212496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,523 DEBUG Processing 691/729 atomic regions from SNP 207127 to 207727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,642 DEBUG Processing 52/660 atomic regions from SNP 15339 to 15939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,687 DEBUG Processing 708/744 atomic regions from SNP 212196 to 212796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,812 DEBUG Processing 692/729 atomic regions from SNP 207427 to 208027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,872 DEBUG Processing 53/660 atomic regions from SNP 15639 to 16239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:00,936 DEBUG Processing 709/744 atomic regions from SNP 212496 to 213096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,082 DEBUG Processing 54/660 atomic regions from SNP 15939 to 16539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,100 DEBUG Processing 693/729 atomic regions from SNP 207727 to 208327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,181 DEBUG Processing 710/744 atomic regions from SNP 212796 to 213396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,291 DEBUG Processing 55/660 atomic regions from SNP 16239 to 16839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,392 DEBUG Processing 694/729 atomic regions from SNP 208027 to 208627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,436 DEBUG Processing 711/744 atomic regions from SNP 213096 to 213696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,504 DEBUG Processing 56/660 atomic regions from SNP 16539 to 17139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,681 DEBUG Processing 695/729 atomic regions from SNP 208327 to 208927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,689 DEBUG Processing 712/744 atomic regions from SNP 213396 to 213996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,719 DEBUG Processing 57/660 atomic regions from SNP 16839 to 17439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,935 DEBUG Processing 58/660 atomic regions from SNP 17139 to 17739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:01,946 DEBUG Processing 713/744 atomic regions from SNP 213696 to 214296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,987 DEBUG Processing 696/729 atomic regions from SNP 208627 to 209227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,148 DEBUG Processing 59/660 atomic regions from SNP 17439 to 18039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,196 DEBUG Processing 714/744 atomic regions from SNP 213996 to 214596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,271 DEBUG Processing 697/729 atomic regions from SNP 208927 to 209527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,361 DEBUG Processing 60/660 atomic regions from SNP 17739 to 18339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,441 DEBUG Processing 715/744 atomic regions from SNP 214296 to 214896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,542 DEBUG Processing 698/729 atomic regions from SNP 209227 to 209827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,570 DEBUG Processing 61/660 atomic regions from SNP 18039 to 18639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,688 DEBUG Processing 716/744 atomic regions from SNP 214596 to 215196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,782 DEBUG Processing 62/660 atomic regions from SNP 18339 to 18939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:02,812 DEBUG Processing 699/729 atomic regions from SNP 209527 to 210127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,927 DEBUG Processing 717/744 atomic regions from SNP 214896 to 215496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,992 DEBUG Processing 63/660 atomic regions from SNP 18639 to 19239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,087 DEBUG Processing 700/729 atomic regions from SNP 209827 to 210427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,172 DEBUG Processing 718/744 atomic regions from SNP 215196 to 215796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,202 DEBUG Processing 64/660 atomic regions from SNP 18939 to 19539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,354 DEBUG Processing 701/729 atomic regions from SNP 210127 to 210727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,413 DEBUG Processing 719/744 atomic regions from SNP 215496 to 216096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,414 DEBUG Processing 65/660 atomic regions from SNP 19239 to 19839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,620 DEBUG Processing 702/729 atomic regions from SNP 210427 to 211027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,625 DEBUG Processing 66/660 atomic regions from SNP 19539 to 20139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,652 DEBUG Processing 720/744 atomic regions from SNP 215796 to 216396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,835 DEBUG Processing 67/660 atomic regions from SNP 19839 to 20439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:03,885 DEBUG Processing 703/729 atomic regions from SNP 210727 to 211327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,892 DEBUG Processing 721/744 atomic regions from SNP 216096 to 216696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,045 DEBUG Processing 68/660 atomic regions from SNP 20139 to 20739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,130 DEBUG Processing 722/744 atomic regions from SNP 216396 to 216996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,158 DEBUG Processing 704/729 atomic regions from SNP 211027 to 211627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,260 DEBUG Processing 69/660 atomic regions from SNP 20439 to 21039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,370 DEBUG Processing 723/744 atomic regions from SNP 216696 to 217296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,413 DEBUG Processing 705/729 atomic regions from SNP 211327 to 211927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,483 DEBUG Processing 70/660 atomic regions from SNP 20739 to 21339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,610 DEBUG Processing 724/744 atomic regions from SNP 216996 to 217596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,661 DEBUG Processing 706/729 atomic regions from SNP 211627 to 212227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,717 DEBUG Processing 71/660 atomic regions from SNP 21039 to 21639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:04,895 DEBUG Processing 725/744 atomic regions from SNP 217296 to 217896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,933 DEBUG Processing 707/729 atomic regions from SNP 211927 to 212527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,968 DEBUG Processing 72/660 atomic regions from SNP 21339 to 21939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,174 DEBUG Processing 726/744 atomic regions from SNP 217596 to 218196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,191 DEBUG Processing 708/729 atomic regions from SNP 212227 to 212827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,205 DEBUG Processing 73/660 atomic regions from SNP 21639 to 22239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,457 DEBUG Processing 709/729 atomic regions from SNP 212527 to 213127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,459 DEBUG Processing 74/660 atomic regions from SNP 21939 to 22539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,464 DEBUG Processing 727/744 atomic regions from SNP 217896 to 218496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,710 DEBUG Processing 75/660 atomic regions from SNP 22239 to 22839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,715 DEBUG Processing 710/729 atomic regions from SNP 212827 to 213427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,741 DEBUG Processing 728/744 atomic regions from SNP 218196 to 218796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,967 DEBUG Processing 76/660 atomic regions from SNP 22539 to 23139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:05,993 DEBUG Processing 711/729 atomic regions from SNP 213127 to 213727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,033 DEBUG Processing 729/744 atomic regions from SNP 218496 to 219096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,220 DEBUG Processing 77/660 atomic regions from SNP 22839 to 23439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,276 DEBUG Processing 712/729 atomic regions from SNP 213427 to 214027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,322 DEBUG Processing 730/744 atomic regions from SNP 218796 to 219396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,494 DEBUG Processing 78/660 atomic regions from SNP 23139 to 23739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,582 DEBUG Processing 713/729 atomic regions from SNP 213727 to 214327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,605 DEBUG Processing 731/744 atomic regions from SNP 219096 to 219696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,737 DEBUG Processing 79/660 atomic regions from SNP 23439 to 24039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:06,863 DEBUG Processing 714/729 atomic regions from SNP 214027 to 214627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,883 DEBUG Processing 732/744 atomic regions from SNP 219396 to 219996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,974 DEBUG Processing 80/660 atomic regions from SNP 23739 to 24339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,136 DEBUG Processing 715/729 atomic regions from SNP 214327 to 214927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,181 DEBUG Processing 733/744 atomic regions from SNP 219696 to 220296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,199 DEBUG Processing 81/660 atomic regions from SNP 24039 to 24639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,531 DEBUG Processing 716/729 atomic regions from SNP 214627 to 215227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,541 DEBUG Processing 82/660 atomic regions from SNP 24339 to 24939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:07,616 DEBUG Processing 734/744 atomic regions from SNP 219996 to 220596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,931 DEBUG Processing 717/729 atomic regions from SNP 214927 to 215527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,964 DEBUG Processing 83/660 atomic regions from SNP 24639 to 25239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,040 DEBUG Processing 735/744 atomic regions from SNP 220296 to 220896 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,384 DEBUG Processing 718/729 atomic regions from SNP 215227 to 215827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,397 DEBUG Processing 84/660 atomic regions from SNP 24939 to 25539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,541 DEBUG Processing 736/744 atomic regions from SNP 220596 to 221196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,867 DEBUG Processing 85/660 atomic regions from SNP 25239 to 25839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:08,867 DEBUG Processing 719/729 atomic regions from SNP 215527 to 216127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,073 DEBUG Processing 737/744 atomic regions from SNP 220896 to 221496 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,327 DEBUG Processing 720/729 atomic regions from SNP 215827 to 216427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,343 DEBUG Processing 86/660 atomic regions from SNP 25539 to 26139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,628 DEBUG Processing 738/744 atomic regions from SNP 221196 to 221796 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,866 DEBUG Processing 87/660 atomic regions from SNP 25839 to 26439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:09,881 DEBUG Processing 721/729 atomic regions from SNP 216127 to 216727 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,148 DEBUG Processing 739/744 atomic regions from SNP 221496 to 222096 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,441 DEBUG Processing 88/660 atomic regions from SNP 26139 to 26739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,457 DEBUG Processing 722/729 atomic regions from SNP 216427 to 217027 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,529 DEBUG Processing 740/744 atomic regions from SNP 221796 to 222396 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,864 DEBUG Processing 89/660 atomic regions from SNP 26439 to 27039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:10,895 DEBUG Processing 723/729 atomic regions from SNP 216727 to 217327 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,947 DEBUG Processing 741/744 atomic regions from SNP 222096 to 222696 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,195 DEBUG Processing 90/660 atomic regions from SNP 26739 to 27339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,274 DEBUG Processing 724/729 atomic regions from SNP 217027 to 217627 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,340 DEBUG Processing 742/744 atomic regions from SNP 222396 to 222996 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,612 DEBUG Processing 91/660 atomic regions from SNP 27039 to 27639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:11,719 DEBUG Processing 725/729 atomic regions from SNP 217327 to 217927 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,799 DEBUG Processing 743/744 atomic regions from SNP 222696 to 223296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,056 DEBUG Processing 92/660 atomic regions from SNP 27339 to 27939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,191 DEBUG Processing 726/729 atomic regions from SNP 217627 to 218227 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,282 DEBUG Processing 744/744 atomic regions from SNP 222996 to 223596 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,461 DEBUG Processing 93/660 atomic regions from SNP 27639 to 28239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:12,619 DEBUG Processing 727/729 atomic regions from SNP 217927 to 218527 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,631 DEBUG Unique SNPs positions in subchromosome 1: 223597 2025-01-31 09:52:12,873 DEBUG Processing 94/660 atomic regions from SNP 27939 to 28539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,025 DEBUG Processing 728/729 atomic regions from SNP 218227 to 218827 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,271 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:13,274 DEBUG chr9: Signal quantile: 0.990. signal threshold: 17. Best RMSEA: 0.015 2025-01-31 09:52:13,284 DEBUG Processing 95/660 atomic regions from SNP 28239 to 28839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,451 DEBUG Processing 729/729 atomic regions from SNP 218527 to 219127 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,649 DEBUG Processing 96/660 atomic regions from SNP 28539 to 29139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:13,820 DEBUG Unique SNPs positions in subchromosome 1: 219128 2025-01-31 09:52:14,015 DEBUG Processing 97/660 atomic regions from SNP 28839 to 29439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,383 DEBUG Processing 98/660 atomic regions from SNP 29139 to 29739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:14,754 DEBUG Processing 99/660 atomic regions from SNP 29439 to 30039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,256 DEBUG Processing 100/660 atomic regions from SNP 29739 to 30339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:15,707 DEBUG Subchromosome time: 210.79394843697082, subchromosome SNPs: 210523 2025-01-31 09:52:15,707 DEBUG Estimated BADs: [1.21, 9.65, 0.48, 4.83, 0.60, 14.48, 0.60, 9.65, 0.80, 21.72, 7.24, 0.00, 0.40, 9.65, 1.21, 7.24, 0.40, 4.83, 1.21, 4.83, 0.80, 2.41, 16.89, 7.24, 0.48, 4.83, 0.60, 2.41, 0.30, 2.41, 0.48, 2.41, 1.21, 2.41, 0.60, 2.41, 7.24, 2.41, 0.30, 2.41, 0.34, 1.21, 0.27, 2.41, 4.83, 0.80, 2.41, 0.60, 2.41, 9.65, 2.41, 12.07, 4.83] SNP counts: [848, 2329, 836, 2546, 3829, 316, 3284, 2251, 2327, 987, 1112, 33, 1110, 3372, 1816, 7359, 1777, 3973, 2966, 1507, 5989, 2472, 2509, 2840, 1820, 2892, 2525, 928, 5398, 2092, 10767, 9699, 7871, 4738, 2988, 2485, 3269, 7187, 5953, 3318, 2401, 2130, 4168, 4374, 9100, 3302, 1472, 3619, 31243, 5392, 23223, 1972, 6507] SNP IDs counts: [848, 2329, 836, 2546, 3829, 316, 3284, 2251, 2327, 987, 1112, 33, 1110, 3372, 1816, 7359, 1777, 3973, 2966, 1507, 5989, 2472, 2509, 2840, 1820, 2892, 2525, 928, 5398, 2092, 10767, 9699, 7871, 4738, 2988, 2485, 3269, 7187, 5953, 3318, 2401, 2130, 4168, 4374, 9100, 3302, 1472, 3619, 31243, 5392, 23223, 1972, 6507] Critical gap: 669814bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.59Mbp, 5.11Mbp, 5.72Mbp, 7.30Mbp, 12.90Mbp, 13.07Mbp, 15.91Mbp, 17.09Mbp, 18.95Mbp, 19.46Mbp, 20.07Mbp[0.71Mbp], 21.37Mbp[1.42Mbp], 24.07Mbp, 25.92Mbp, 27.15Mbp, 31.15Mbp, 33.76Mbp, 35.93Mbp, 37.50Mbp, 38.28Mbp, 42.89Mbp, 44.37Mbp, 45.68Mbp, 47.17Mbp, 48.37Mbp, 49.96Mbp, 51.52Mbp, 52.02Mbp, 55.41Mbp, 56.69Mbp, 63.85Mbp, 69.11Mbp, 73.52Mbp, 76.19Mbp, 77.90Mbp, 79.24Mbp, 80.95Mbp, 84.89Mbp, 88.64Mbp, 90.51Mbp, 91.88Mbp, 93.08Mbp, 95.66Mbp, 98.05Mbp, 102.85Mbp, 104.99Mbp, 106.03Mbp, 108.53Mbp, 125.40Mbp, 128.27Mbp, 140.81Mbp, 141.88Mbp, 145.44Mbp] 2025-01-31 09:52:15,707 DEBUG chr7 time: 210.79459764400963 s 2025-01-31 09:52:15,727 DEBUG Processing 101/660 atomic regions from SNP 30039 to 30639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,009 DEBUG chr7: Fitting background model for 52 segments 2025-01-31 09:52:16,158 DEBUG Processing 102/660 atomic regions from SNP 30339 to 30939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:16,669 DEBUG Processing 103/660 atomic regions from SNP 30639 to 31239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,124 DEBUG Processing 104/660 atomic regions from SNP 30939 to 31539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:17,863 DEBUG Processing 105/660 atomic regions from SNP 31239 to 31839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,332 DEBUG Processing 106/660 atomic regions from SNP 31539 to 32139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:18,776 DEBUG Processing 107/660 atomic regions from SNP 31839 to 32439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,299 DEBUG Processing 108/660 atomic regions from SNP 32139 to 32739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:19,719 DEBUG Processing 109/660 atomic regions from SNP 32439 to 33039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,075 DEBUG Processing 110/660 atomic regions from SNP 32739 to 33339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,245 DEBUG chr9 total SNP count: 217251 2025-01-31 09:52:20,245 DEBUG chr9 length: 124595110 2025-01-31 09:52:20,245 DEBUG ----------------------------------------- 2025-01-31 09:52:20,245 INFO Processing SNPs in chr9 2025-01-31 09:52:20,479 DEBUG Processing 111/660 atomic regions from SNP 33039 to 33639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:20,498 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 217251)] 2025-01-31 09:52:20,671 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:20,851 DEBUG Processing 112/660 atomic regions from SNP 33339 to 33939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,292 DEBUG Processing 113/660 atomic regions from SNP 33639 to 34239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,598 DEBUG Processing 114/660 atomic regions from SNP 33939 to 34539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:21,983 DEBUG Processing 115/660 atomic regions from SNP 34239 to 34839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,338 DEBUG Processing 116/660 atomic regions from SNP 34539 to 35139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,750 DEBUG Processing 117/660 atomic regions from SNP 34839 to 35439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:22,988 DEBUG Processing 118/660 atomic regions from SNP 35139 to 35739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,215 DEBUG Processing 119/660 atomic regions from SNP 35439 to 36039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,422 DEBUG Processing 120/660 atomic regions from SNP 35739 to 36339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,708 DEBUG Processing 121/660 atomic regions from SNP 36039 to 36639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:23,926 DEBUG Processing 122/660 atomic regions from SNP 36339 to 36939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,193 DEBUG Processing 123/660 atomic regions from SNP 36639 to 37239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,398 DEBUG Processing 124/660 atomic regions from SNP 36939 to 37539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,609 DEBUG Processing 125/660 atomic regions from SNP 37239 to 37839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:24,855 DEBUG Processing 126/660 atomic regions from SNP 37539 to 38139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,065 DEBUG Processing 127/660 atomic regions from SNP 37839 to 38439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,266 DEBUG Processing 128/660 atomic regions from SNP 38139 to 38739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,467 DEBUG Processing 129/660 atomic regions from SNP 38439 to 39039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,671 DEBUG Processing 130/660 atomic regions from SNP 38739 to 39339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:25,883 DEBUG Processing 131/660 atomic regions from SNP 39039 to 39639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,110 DEBUG Processing 132/660 atomic regions from SNP 39339 to 39939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,343 DEBUG Processing 133/660 atomic regions from SNP 39639 to 40239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,567 DEBUG Processing 134/660 atomic regions from SNP 39939 to 40539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,800 DEBUG Processing 135/660 atomic regions from SNP 40239 to 40839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:26,857 DEBUG Subchromosome time: 225.08709525107406, subchromosome SNPs: 223597 2025-01-31 09:52:26,858 DEBUG Estimated BADs: [2.29, 0.46, 2.29, 0.76, 2.29, 6.86, 2.29, 0.33, 1.14, 4.57, 0.33, 2.29, 1.14, 6.86, 2.29, 22.87, 2.29, 18.30, 1.14, 4.57, 1.14, 0.46, 1.14, 2.29, 0.76, 11.44, 0.76] SNP counts: [20562, 3310, 22519, 15303, 2899, 6433, 6007, 4456, 13603, 11062, 2928, 10799, 6108, 5306, 2099, 4190, 16124, 212, 3362, 8498, 5395, 11121, 11380, 17418, 6050, 4427, 2026] SNP IDs counts: [20562, 3310, 22519, 15303, 2899, 6433, 6007, 4456, 13603, 11062, 2928, 10799, 6108, 5306, 2099, 4190, 16124, 212, 3362, 8498, 5395, 11121, 11380, 17418, 6050, 4427, 2026] Critical gap: 619313bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 14.83Mbp, 16.90Mbp, 29.54Mbp, 38.49Mbp, 40.11Mbp, 43.54Mbp, 46.88Mbp, 49.83Mbp, 58.22Mbp, 64.13Mbp, 66.08Mbp, 72.01Mbp, 75.50Mbp, 78.31Mbp, 79.61Mbp, 82.14Mbp, 91.08Mbp, 91.19Mbp, 93.04Mbp, 97.57Mbp, 100.72Mbp, 107.50Mbp, 113.92Mbp, 123.48Mbp, 126.89Mbp, 129.31Mbp, 130.69Mbp] 2025-01-31 09:52:26,858 DEBUG chr10 time: 225.08770141901914 s 2025-01-31 09:52:26,985 DEBUG chr10: Fitting background model for 27 segments 2025-01-31 09:52:27,040 DEBUG Processing 136/660 atomic regions from SNP 40539 to 41139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,286 DEBUG Processing 137/660 atomic regions from SNP 40839 to 41439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,534 DEBUG Processing 138/660 atomic regions from SNP 41139 to 41739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,782 DEBUG Processing 139/660 atomic regions from SNP 41439 to 42039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,020 DEBUG Processing 140/660 atomic regions from SNP 41739 to 42339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,261 DEBUG Processing 141/660 atomic regions from SNP 42039 to 42639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,500 DEBUG Processing 142/660 atomic regions from SNP 42339 to 42939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,727 DEBUG Processing 143/660 atomic regions from SNP 42639 to 43239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,972 DEBUG Processing 144/660 atomic regions from SNP 42939 to 43539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,215 DEBUG Processing 145/660 atomic regions from SNP 43239 to 43839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,460 DEBUG Processing 146/660 atomic regions from SNP 43539 to 44139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,678 DEBUG Processing 147/660 atomic regions from SNP 43839 to 44439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,897 DEBUG Processing 148/660 atomic regions from SNP 44139 to 44739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,273 DEBUG Processing 149/660 atomic regions from SNP 44439 to 45039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,626 DEBUG Processing 150/660 atomic regions from SNP 44739 to 45339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,926 DEBUG Processing 151/660 atomic regions from SNP 45039 to 45639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,256 DEBUG Processing 152/660 atomic regions from SNP 45339 to 45939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,516 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:52:31,518 DEBUG chr11: Signal quantile: 0.986. signal threshold: 19. Best RMSEA: 0.010 2025-01-31 09:52:31,518 DEBUG Processing 153/660 atomic regions from SNP 45639 to 46239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,751 DEBUG Processing 154/660 atomic regions from SNP 45939 to 46539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,981 DEBUG Processing 155/660 atomic regions from SNP 46239 to 46839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,193 DEBUG Processing 156/660 atomic regions from SNP 46539 to 47139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,407 DEBUG Processing 157/660 atomic regions from SNP 46839 to 47439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,636 DEBUG Processing 158/660 atomic regions from SNP 47139 to 47739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,868 DEBUG Processing 159/660 atomic regions from SNP 47439 to 48039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,109 DEBUG Processing 160/660 atomic regions from SNP 47739 to 48339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,360 DEBUG Processing 161/660 atomic regions from SNP 48039 to 48639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,602 DEBUG Processing 162/660 atomic regions from SNP 48339 to 48939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,735 DEBUG chr11 total SNP count: 215417 2025-01-31 09:52:33,735 DEBUG chr11 length: 122082543 2025-01-31 09:52:33,736 DEBUG ----------------------------------------- 2025-01-31 09:52:33,736 INFO Processing SNPs in chr11 2025-01-31 09:52:33,828 DEBUG Processing 163/660 atomic regions from SNP 48639 to 49239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,963 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 215417)] 2025-01-31 09:52:34,040 DEBUG Processing 164/660 atomic regions from SNP 48939 to 49539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,119 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:34,251 DEBUG Processing 165/660 atomic regions from SNP 49239 to 49839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,466 DEBUG Processing 166/660 atomic regions from SNP 49539 to 50139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,699 DEBUG Processing 167/660 atomic regions from SNP 49839 to 50439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,912 DEBUG Processing 168/660 atomic regions from SNP 50139 to 50739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,119 DEBUG Processing 169/660 atomic regions from SNP 50439 to 51039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,325 DEBUG Processing 170/660 atomic regions from SNP 50739 to 51339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,536 DEBUG Processing 171/660 atomic regions from SNP 51039 to 51639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,959 DEBUG Processing 172/660 atomic regions from SNP 51339 to 51939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,191 DEBUG Processing 173/660 atomic regions from SNP 51639 to 52239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,404 DEBUG Processing 174/660 atomic regions from SNP 51939 to 52539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,625 DEBUG Processing 175/660 atomic regions from SNP 52239 to 52839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,922 DEBUG Processing 176/660 atomic regions from SNP 52539 to 53139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,158 DEBUG Processing 177/660 atomic regions from SNP 52839 to 53439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,364 DEBUG Processing 178/660 atomic regions from SNP 53139 to 53739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,571 DEBUG Processing 179/660 atomic regions from SNP 53439 to 54039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,778 DEBUG Processing 180/660 atomic regions from SNP 53739 to 54339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,981 DEBUG Processing 181/660 atomic regions from SNP 54039 to 54639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,186 DEBUG Processing 182/660 atomic regions from SNP 54339 to 54939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,393 DEBUG Processing 183/660 atomic regions from SNP 54639 to 55239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,595 DEBUG Processing 184/660 atomic regions from SNP 54939 to 55539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,797 DEBUG Processing 185/660 atomic regions from SNP 55239 to 55839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,001 DEBUG Processing 186/660 atomic regions from SNP 55539 to 56139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,197 DEBUG Processing 187/660 atomic regions from SNP 55839 to 56439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,391 DEBUG Processing 188/660 atomic regions from SNP 56139 to 56739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,584 DEBUG Processing 189/660 atomic regions from SNP 56439 to 57039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,779 DEBUG Processing 190/660 atomic regions from SNP 56739 to 57339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,974 DEBUG Processing 191/660 atomic regions from SNP 57039 to 57639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,172 DEBUG Processing 192/660 atomic regions from SNP 57339 to 57939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,373 DEBUG Processing 193/660 atomic regions from SNP 57639 to 58239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,573 DEBUG Processing 194/660 atomic regions from SNP 57939 to 58539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,776 DEBUG Processing 195/660 atomic regions from SNP 58239 to 58839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,982 DEBUG Processing 196/660 atomic regions from SNP 58539 to 59139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,182 DEBUG Processing 197/660 atomic regions from SNP 58839 to 59439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,403 DEBUG Processing 198/660 atomic regions from SNP 59139 to 59739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,609 DEBUG Processing 199/660 atomic regions from SNP 59439 to 60039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,807 DEBUG Processing 200/660 atomic regions from SNP 59739 to 60339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,960 DEBUG Subchromosome time: 237.39763516990934, subchromosome SNPs: 219128 2025-01-31 09:52:41,960 DEBUG Estimated BADs: [5.70, 0.28, 1.42, 5.70, 0.57, 2.85, 5.70, 0.47, 1.42, 2.85, 0.47, 1.42, 0.47, 2.85, 0.47, 1.42, 0.36, 1.42, 19.95, 8.55, 0.71, 2.85, 0.57, 2.85, 1.42, 17.10, 2.85, 8.55, 0.36, 1.42, 8.55, 2.85, 5.70, 1.42, 5.70, 19.95, 8.55, 2.85] SNP counts: [2695, 4323, 3916, 10533, 4501, 10588, 3550, 5119, 5255, 5871, 5365, 2700, 3278, 9946, 8374, 6014, 3573, 16098, 2360, 3172, 2367, 1527, 1799, 8680, 4220, 2958, 16812, 3916, 11408, 2590, 5216, 4303, 5927, 6928, 4741, 8700, 5407, 4398] SNP IDs counts: [2695, 4323, 3916, 10533, 4501, 10588, 3550, 5119, 5255, 5871, 5365, 2700, 3278, 9946, 8374, 6014, 3573, 16098, 2360, 3172, 2367, 1527, 1799, 8680, 4220, 2958, 16812, 3916, 11408, 2590, 5216, 4303, 5927, 6928, 4741, 8700, 5407, 4398] Critical gap: 619377bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.69Mbp, 7.51Mbp, 9.72Mbp, 15.31Mbp, 17.97Mbp, 25.60Mbp, 27.51Mbp, 30.61Mbp, 33.59Mbp, 36.75Mbp, 39.99Mbp, 41.57Mbp, 43.58Mbp, 49.05Mbp, 54.10Mbp, 57.96Mbp, 60.18Mbp, 69.70Mbp, 70.93Mbp, 72.89Mbp, 74.38Mbp, 75.30Mbp, 76.39Mbp, 81.12Mbp, 83.57Mbp, 85.10Mbp, 94.16Mbp, 96.28Mbp, 103.14Mbp, 104.53Mbp, 107.38Mbp, 109.67Mbp, 112.82Mbp, 116.87Mbp, 119.38Mbp, 124.00Mbp, 126.85Mbp, 129.40Mbp] 2025-01-31 09:52:41,961 DEBUG chr8 time: 237.39853243995458 s 2025-01-31 09:52:42,010 DEBUG Processing 201/660 atomic regions from SNP 60039 to 60639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,093 DEBUG chr8: Fitting background model for 38 segments 2025-01-31 09:52:42,203 DEBUG Processing 202/660 atomic regions from SNP 60339 to 60939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,403 DEBUG Processing 203/660 atomic regions from SNP 60639 to 61239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,604 DEBUG Processing 204/660 atomic regions from SNP 60939 to 61539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,804 DEBUG Processing 205/660 atomic regions from SNP 61239 to 61839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,999 DEBUG Processing 206/660 atomic regions from SNP 61539 to 62139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,219 DEBUG Processing 207/660 atomic regions from SNP 61839 to 62439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,424 DEBUG Processing 208/660 atomic regions from SNP 62139 to 62739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,638 DEBUG Processing 209/660 atomic regions from SNP 62439 to 63039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,830 DEBUG Processing 210/660 atomic regions from SNP 62739 to 63339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,023 DEBUG Processing 211/660 atomic regions from SNP 63039 to 63639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,214 DEBUG Processing 212/660 atomic regions from SNP 63339 to 63939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,410 DEBUG Processing 213/660 atomic regions from SNP 63639 to 64239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,611 DEBUG Processing 214/660 atomic regions from SNP 63939 to 64539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,810 DEBUG Processing 215/660 atomic regions from SNP 64239 to 64839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,030 DEBUG Processing 216/660 atomic regions from SNP 64539 to 65139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,243 DEBUG Processing 217/660 atomic regions from SNP 64839 to 65439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,456 DEBUG Processing 218/660 atomic regions from SNP 65139 to 65739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,684 DEBUG Processing 219/660 atomic regions from SNP 65439 to 66039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,908 DEBUG Processing 220/660 atomic regions from SNP 65739 to 66339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,127 DEBUG Processing 221/660 atomic regions from SNP 66039 to 66639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,320 DEBUG Processing 222/660 atomic regions from SNP 66339 to 66939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,514 DEBUG Processing 223/660 atomic regions from SNP 66639 to 67239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,705 DEBUG Processing 224/660 atomic regions from SNP 66939 to 67539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,901 DEBUG Processing 225/660 atomic regions from SNP 67239 to 67839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,113 DEBUG Processing 226/660 atomic regions from SNP 67539 to 68139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,323 DEBUG Processing 227/660 atomic regions from SNP 67839 to 68439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,521 DEBUG Processing 228/660 atomic regions from SNP 68139 to 68739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,721 DEBUG Processing 229/660 atomic regions from SNP 68439 to 69039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,929 DEBUG Processing 230/660 atomic regions from SNP 68739 to 69339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,149 DEBUG Processing 231/660 atomic regions from SNP 69039 to 69639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,346 DEBUG Processing 232/660 atomic regions from SNP 69339 to 69939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,444 DEBUG Segmenting atomic regions: 2025-01-31 09:52:48,539 DEBUG Processing 1/723 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,541 DEBUG Processing 233/660 atomic regions from SNP 69639 to 70239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,737 DEBUG Processing 234/660 atomic regions from SNP 69939 to 70539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,758 DEBUG Processing 2/723 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:48,934 DEBUG Processing 235/660 atomic regions from SNP 70239 to 70839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,983 DEBUG Processing 3/723 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,131 DEBUG Processing 236/660 atomic regions from SNP 70539 to 71139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,209 DEBUG Processing 4/723 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,333 DEBUG Processing 237/660 atomic regions from SNP 70839 to 71439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,435 DEBUG Processing 5/723 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,536 DEBUG Processing 238/660 atomic regions from SNP 71139 to 71739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,658 DEBUG Processing 6/723 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,737 DEBUG Processing 239/660 atomic regions from SNP 71439 to 72039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,880 DEBUG Processing 7/723 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:49,967 DEBUG Processing 240/660 atomic regions from SNP 71739 to 72339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,099 DEBUG Processing 8/723 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,198 DEBUG Processing 241/660 atomic regions from SNP 72039 to 72639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,321 DEBUG Processing 9/723 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,421 DEBUG Processing 242/660 atomic regions from SNP 72339 to 72939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,544 DEBUG Processing 10/723 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,623 DEBUG Processing 243/660 atomic regions from SNP 72639 to 73239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,766 DEBUG Processing 11/723 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:50,821 DEBUG Processing 244/660 atomic regions from SNP 72939 to 73539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,982 DEBUG Processing 12/723 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,017 DEBUG Processing 245/660 atomic regions from SNP 73239 to 73839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,195 DEBUG Processing 13/723 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,236 DEBUG Processing 246/660 atomic regions from SNP 73539 to 74139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,415 DEBUG Processing 14/723 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,467 DEBUG Processing 247/660 atomic regions from SNP 73839 to 74439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,640 DEBUG Processing 15/723 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,700 DEBUG Processing 248/660 atomic regions from SNP 74139 to 74739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,865 DEBUG Processing 16/723 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:51,902 DEBUG Processing 249/660 atomic regions from SNP 74439 to 75039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,084 DEBUG Processing 17/723 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,097 DEBUG Processing 250/660 atomic regions from SNP 74739 to 75339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,296 DEBUG Processing 251/660 atomic regions from SNP 75039 to 75639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,303 DEBUG Processing 18/723 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,498 DEBUG Processing 252/660 atomic regions from SNP 75339 to 75939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,522 DEBUG Processing 19/723 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,701 DEBUG Processing 253/660 atomic regions from SNP 75639 to 76239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,736 DEBUG Processing 20/723 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:52,905 DEBUG Processing 254/660 atomic regions from SNP 75939 to 76539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,953 DEBUG Processing 21/723 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,121 DEBUG Processing 255/660 atomic regions from SNP 76239 to 76839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,169 DEBUG Processing 22/723 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,347 DEBUG Processing 256/660 atomic regions from SNP 76539 to 77139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,381 DEBUG Processing 23/723 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,590 DEBUG Processing 257/660 atomic regions from SNP 76839 to 77439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,597 DEBUG Processing 24/723 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,809 DEBUG Processing 25/723 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:53,832 DEBUG Processing 258/660 atomic regions from SNP 77139 to 77739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,021 DEBUG Processing 26/723 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,065 DEBUG Processing 259/660 atomic regions from SNP 77439 to 78039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,238 DEBUG Processing 27/723 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,299 DEBUG Processing 260/660 atomic regions from SNP 77739 to 78339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,477 DEBUG Processing 28/723 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,530 DEBUG Processing 261/660 atomic regions from SNP 78039 to 78639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,697 DEBUG Processing 29/723 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,732 DEBUG Processing 262/660 atomic regions from SNP 78339 to 78939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,917 DEBUG Processing 30/723 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:54,955 DEBUG Processing 263/660 atomic regions from SNP 78639 to 79239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,132 DEBUG Processing 31/723 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,195 DEBUG Processing 264/660 atomic regions from SNP 78939 to 79539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,349 DEBUG Processing 32/723 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,431 DEBUG Processing 265/660 atomic regions from SNP 79239 to 79839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,564 DEBUG Processing 33/723 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,656 DEBUG Processing 266/660 atomic regions from SNP 79539 to 80139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,775 DEBUG Processing 34/723 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:55,856 DEBUG Processing 267/660 atomic regions from SNP 79839 to 80439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,985 DEBUG Processing 35/723 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,052 DEBUG Processing 268/660 atomic regions from SNP 80139 to 80739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,196 DEBUG Processing 36/723 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,263 DEBUG Processing 269/660 atomic regions from SNP 80439 to 81039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,407 DEBUG Processing 37/723 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,490 DEBUG Processing 270/660 atomic regions from SNP 80739 to 81339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,618 DEBUG Processing 38/723 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,711 DEBUG Processing 271/660 atomic regions from SNP 81039 to 81639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,832 DEBUG Processing 39/723 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:56,920 DEBUG Processing 272/660 atomic regions from SNP 81339 to 81939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,044 DEBUG Processing 40/723 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,123 DEBUG Processing 273/660 atomic regions from SNP 81639 to 82239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,261 DEBUG Processing 41/723 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,325 DEBUG Processing 274/660 atomic regions from SNP 81939 to 82539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,476 DEBUG Processing 42/723 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,536 DEBUG Processing 275/660 atomic regions from SNP 82239 to 82839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,687 DEBUG Processing 43/723 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,749 DEBUG Processing 276/660 atomic regions from SNP 82539 to 83139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,899 DEBUG Processing 44/723 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:57,977 DEBUG Processing 277/660 atomic regions from SNP 82839 to 83439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,123 DEBUG Processing 45/723 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,203 DEBUG Processing 278/660 atomic regions from SNP 83139 to 83739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,340 DEBUG Processing 46/723 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,420 DEBUG Processing 279/660 atomic regions from SNP 83439 to 84039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,555 DEBUG Processing 47/723 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,630 DEBUG Processing 280/660 atomic regions from SNP 83739 to 84339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,770 DEBUG Processing 48/723 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:58,841 DEBUG Processing 281/660 atomic regions from SNP 84039 to 84639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,983 DEBUG Processing 49/723 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,044 DEBUG Processing 282/660 atomic regions from SNP 84339 to 84939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,200 DEBUG Processing 50/723 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,244 DEBUG Processing 283/660 atomic regions from SNP 84639 to 85239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,411 DEBUG Processing 51/723 atomic regions from SNP 15050 to 15650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,438 DEBUG Processing 284/660 atomic regions from SNP 84939 to 85539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,621 DEBUG Processing 52/723 atomic regions from SNP 15350 to 15950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,633 DEBUG Processing 285/660 atomic regions from SNP 85239 to 85839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,833 DEBUG Processing 286/660 atomic regions from SNP 85539 to 86139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,839 DEBUG Processing 53/723 atomic regions from SNP 15650 to 16250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,039 DEBUG Processing 287/660 atomic regions from SNP 85839 to 86439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,060 DEBUG Processing 54/723 atomic regions from SNP 15950 to 16550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,075 DEBUG Segmenting atomic regions: 2025-01-31 09:53:00,171 DEBUG Processing 1/717 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,245 DEBUG Processing 288/660 atomic regions from SNP 86139 to 86739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,279 DEBUG Processing 55/723 atomic regions from SNP 16250 to 16850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,410 DEBUG Processing 2/717 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,466 DEBUG Processing 289/660 atomic regions from SNP 86439 to 87039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,501 DEBUG Processing 56/723 atomic regions from SNP 16550 to 17150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,636 DEBUG Processing 3/717 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,689 DEBUG Processing 290/660 atomic regions from SNP 86739 to 87339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,724 DEBUG Processing 57/723 atomic regions from SNP 16850 to 17450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,851 DEBUG Processing 4/717 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:00,892 DEBUG Processing 291/660 atomic regions from SNP 87039 to 87639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,940 DEBUG Processing 58/723 atomic regions from SNP 17150 to 17750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,066 DEBUG Processing 5/717 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,120 DEBUG Processing 292/660 atomic regions from SNP 87339 to 87939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,153 DEBUG Processing 59/723 atomic regions from SNP 17450 to 18050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,293 DEBUG Processing 6/717 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,335 DEBUG Processing 293/660 atomic regions from SNP 87639 to 88239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,390 DEBUG Processing 60/723 atomic regions from SNP 17750 to 18350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,536 DEBUG Processing 7/717 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,540 DEBUG Processing 294/660 atomic regions from SNP 87939 to 88539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,609 DEBUG Processing 61/723 atomic regions from SNP 18050 to 18650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,748 DEBUG Processing 295/660 atomic regions from SNP 88239 to 88839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,775 DEBUG Processing 8/717 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:01,818 DEBUG Processing 62/723 atomic regions from SNP 18350 to 18950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,956 DEBUG Processing 296/660 atomic regions from SNP 88539 to 89139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,998 DEBUG Processing 9/717 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,041 DEBUG Processing 63/723 atomic regions from SNP 18650 to 19250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,177 DEBUG Processing 297/660 atomic regions from SNP 88839 to 89439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,220 DEBUG Processing 10/717 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,266 DEBUG Processing 64/723 atomic regions from SNP 18950 to 19550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,417 DEBUG Processing 298/660 atomic regions from SNP 89139 to 89739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,460 DEBUG Processing 11/717 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,486 DEBUG Processing 65/723 atomic regions from SNP 19250 to 19850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,631 DEBUG Processing 299/660 atomic regions from SNP 89439 to 90039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,691 DEBUG Processing 12/717 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:02,708 DEBUG Processing 66/723 atomic regions from SNP 19550 to 20150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,844 DEBUG Processing 300/660 atomic regions from SNP 89739 to 90339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,930 DEBUG Processing 67/723 atomic regions from SNP 19850 to 20450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,935 DEBUG Processing 13/717 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,071 DEBUG Processing 301/660 atomic regions from SNP 90039 to 90639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,170 DEBUG Processing 14/717 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,178 DEBUG Processing 68/723 atomic regions from SNP 20150 to 20750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,277 DEBUG Processing 302/660 atomic regions from SNP 90339 to 90939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,381 DEBUG Processing 15/717 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,415 DEBUG Processing 69/723 atomic regions from SNP 20450 to 21050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,478 DEBUG Processing 303/660 atomic regions from SNP 90639 to 91239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,602 DEBUG Processing 16/717 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,638 DEBUG Processing 70/723 atomic regions from SNP 20750 to 21350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,682 DEBUG Processing 304/660 atomic regions from SNP 90939 to 91539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,822 DEBUG Processing 17/717 atomic regions from SNP 4816 to 5416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:03,865 DEBUG Processing 71/723 atomic regions from SNP 21050 to 21650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,889 DEBUG Processing 305/660 atomic regions from SNP 91239 to 91839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,058 DEBUG Processing 18/717 atomic regions from SNP 5116 to 5716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,094 DEBUG Processing 306/660 atomic regions from SNP 91539 to 92139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,095 DEBUG Processing 72/723 atomic regions from SNP 21350 to 21950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,291 DEBUG Processing 19/717 atomic regions from SNP 5416 to 6016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,311 DEBUG Processing 307/660 atomic regions from SNP 91839 to 92439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,326 DEBUG Processing 73/723 atomic regions from SNP 21650 to 22250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,504 DEBUG Processing 20/717 atomic regions from SNP 5716 to 6316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,549 DEBUG Processing 308/660 atomic regions from SNP 92139 to 92739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,557 DEBUG Processing 74/723 atomic regions from SNP 21950 to 22550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,735 DEBUG Processing 21/717 atomic regions from SNP 6016 to 6616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:04,773 DEBUG Processing 309/660 atomic regions from SNP 92439 to 93039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,787 DEBUG Processing 75/723 atomic regions from SNP 22250 to 22850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,978 DEBUG Processing 22/717 atomic regions from SNP 6316 to 6916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,006 DEBUG Processing 310/660 atomic regions from SNP 92739 to 93339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,015 DEBUG Processing 76/723 atomic regions from SNP 22550 to 23150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,211 DEBUG Processing 23/717 atomic regions from SNP 6616 to 7216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,237 DEBUG Processing 77/723 atomic regions from SNP 22850 to 23450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,239 DEBUG Processing 311/660 atomic regions from SNP 93039 to 93639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,422 DEBUG Processing 24/717 atomic regions from SNP 6916 to 7516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,461 DEBUG Processing 78/723 atomic regions from SNP 23150 to 23750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,466 DEBUG Processing 312/660 atomic regions from SNP 93339 to 93939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,630 DEBUG Processing 25/717 atomic regions from SNP 7216 to 7816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,674 DEBUG Processing 313/660 atomic regions from SNP 93639 to 94239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,680 DEBUG Processing 79/723 atomic regions from SNP 23450 to 24050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,833 DEBUG Processing 26/717 atomic regions from SNP 7516 to 8116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:05,882 DEBUG Processing 314/660 atomic regions from SNP 93939 to 94539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,904 DEBUG Processing 80/723 atomic regions from SNP 23750 to 24350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,031 DEBUG Processing 27/717 atomic regions from SNP 7816 to 8416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,091 DEBUG Processing 315/660 atomic regions from SNP 94239 to 94839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,123 DEBUG Processing 81/723 atomic regions from SNP 24050 to 24650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,230 DEBUG Processing 28/717 atomic regions from SNP 8116 to 8716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,311 DEBUG Processing 316/660 atomic regions from SNP 94539 to 95139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,342 DEBUG Processing 82/723 atomic regions from SNP 24350 to 24950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,429 DEBUG Processing 29/717 atomic regions from SNP 8416 to 9016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,523 DEBUG Processing 317/660 atomic regions from SNP 94839 to 95439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,564 DEBUG Processing 83/723 atomic regions from SNP 24650 to 25250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,627 DEBUG Processing 30/717 atomic regions from SNP 8716 to 9316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,734 DEBUG Processing 318/660 atomic regions from SNP 95139 to 95739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,785 DEBUG Processing 84/723 atomic regions from SNP 24950 to 25550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,829 DEBUG Processing 31/717 atomic regions from SNP 9016 to 9616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:06,949 DEBUG Processing 319/660 atomic regions from SNP 95439 to 96039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,003 DEBUG Processing 85/723 atomic regions from SNP 25250 to 25850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,035 DEBUG Processing 32/717 atomic regions from SNP 9316 to 9916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,150 DEBUG Processing 320/660 atomic regions from SNP 95739 to 96339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,223 DEBUG Processing 86/723 atomic regions from SNP 25550 to 26150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,243 DEBUG Processing 33/717 atomic regions from SNP 9616 to 10216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,352 DEBUG Processing 321/660 atomic regions from SNP 96039 to 96639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,448 DEBUG Processing 87/723 atomic regions from SNP 25850 to 26450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,456 DEBUG Processing 34/717 atomic regions from SNP 9916 to 10516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,577 DEBUG Processing 322/660 atomic regions from SNP 96339 to 96939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,662 DEBUG Processing 35/717 atomic regions from SNP 10216 to 10816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,662 DEBUG Processing 88/723 atomic regions from SNP 26150 to 26750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,795 DEBUG Processing 323/660 atomic regions from SNP 96639 to 97239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,864 DEBUG Processing 36/717 atomic regions from SNP 10516 to 11116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:07,881 DEBUG Processing 89/723 atomic regions from SNP 26450 to 27050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,017 DEBUG Processing 324/660 atomic regions from SNP 96939 to 97539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,064 DEBUG Processing 37/717 atomic regions from SNP 10816 to 11416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,099 DEBUG Processing 90/723 atomic regions from SNP 26750 to 27350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,236 DEBUG Processing 325/660 atomic regions from SNP 97239 to 97839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,265 DEBUG Processing 38/717 atomic regions from SNP 11116 to 11716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,318 DEBUG Processing 91/723 atomic regions from SNP 27050 to 27650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,433 DEBUG Processing 326/660 atomic regions from SNP 97539 to 98139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,463 DEBUG Processing 39/717 atomic regions from SNP 11416 to 12016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,532 DEBUG Processing 92/723 atomic regions from SNP 27350 to 27950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,650 DEBUG Processing 327/660 atomic regions from SNP 97839 to 98439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,666 DEBUG Processing 40/717 atomic regions from SNP 11716 to 12316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:08,747 DEBUG Processing 93/723 atomic regions from SNP 27650 to 28250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,859 DEBUG Processing 328/660 atomic regions from SNP 98139 to 98739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,958 DEBUG Processing 94/723 atomic regions from SNP 27950 to 28550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,969 DEBUG Processing 41/717 atomic regions from SNP 12016 to 12616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,055 DEBUG Processing 329/660 atomic regions from SNP 98439 to 99039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,175 DEBUG Processing 95/723 atomic regions from SNP 28250 to 28850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,196 DEBUG Processing 42/717 atomic regions from SNP 12316 to 12916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,257 DEBUG Processing 330/660 atomic regions from SNP 98739 to 99339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,392 DEBUG Processing 96/723 atomic regions from SNP 28550 to 29150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,401 DEBUG Processing 43/717 atomic regions from SNP 12616 to 13216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,461 DEBUG Processing 331/660 atomic regions from SNP 99039 to 99639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,603 DEBUG Processing 44/717 atomic regions from SNP 12916 to 13516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,608 DEBUG Processing 97/723 atomic regions from SNP 28850 to 29450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,666 DEBUG Processing 332/660 atomic regions from SNP 99339 to 99939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,801 DEBUG Processing 45/717 atomic regions from SNP 13216 to 13816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:09,829 DEBUG Processing 98/723 atomic regions from SNP 29150 to 29750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,870 DEBUG Processing 333/660 atomic regions from SNP 99639 to 100239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,000 DEBUG Processing 46/717 atomic regions from SNP 13516 to 14116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,064 DEBUG Processing 99/723 atomic regions from SNP 29450 to 30050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,085 DEBUG Processing 334/660 atomic regions from SNP 99939 to 100539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,199 DEBUG Processing 47/717 atomic regions from SNP 13816 to 14416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,306 DEBUG Processing 335/660 atomic regions from SNP 100239 to 100839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,308 DEBUG Processing 100/723 atomic regions from SNP 29750 to 30350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,403 DEBUG Processing 48/717 atomic regions from SNP 14116 to 14716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,505 DEBUG Processing 336/660 atomic regions from SNP 100539 to 101139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,565 DEBUG Processing 101/723 atomic regions from SNP 30050 to 30650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,610 DEBUG Processing 49/717 atomic regions from SNP 14416 to 15016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,709 DEBUG Processing 337/660 atomic regions from SNP 100839 to 101439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,819 DEBUG Processing 50/717 atomic regions from SNP 14716 to 15316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:10,821 DEBUG Processing 102/723 atomic regions from SNP 30350 to 30950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,916 DEBUG Processing 338/660 atomic regions from SNP 101139 to 101739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,028 DEBUG Processing 51/717 atomic regions from SNP 15016 to 15616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,075 DEBUG Processing 103/723 atomic regions from SNP 30650 to 31250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,115 DEBUG Processing 339/660 atomic regions from SNP 101439 to 102039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,248 DEBUG Processing 52/717 atomic regions from SNP 15316 to 15916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,319 DEBUG Processing 340/660 atomic regions from SNP 101739 to 102339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,330 DEBUG Processing 104/723 atomic regions from SNP 30950 to 31550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,464 DEBUG Processing 53/717 atomic regions from SNP 15616 to 16216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,524 DEBUG Processing 341/660 atomic regions from SNP 102039 to 102639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,580 DEBUG Processing 105/723 atomic regions from SNP 31250 to 31850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,681 DEBUG Processing 54/717 atomic regions from SNP 15916 to 16516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,735 DEBUG Processing 342/660 atomic regions from SNP 102339 to 102939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,834 DEBUG Processing 106/723 atomic regions from SNP 31550 to 32150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,899 DEBUG Processing 55/717 atomic regions from SNP 16216 to 16816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:11,945 DEBUG Processing 343/660 atomic regions from SNP 102639 to 103239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,086 DEBUG Processing 107/723 atomic regions from SNP 31850 to 32450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,111 DEBUG Processing 56/717 atomic regions from SNP 16516 to 17116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,151 DEBUG Processing 344/660 atomic regions from SNP 102939 to 103539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,320 DEBUG Processing 57/717 atomic regions from SNP 16816 to 17416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,337 DEBUG Processing 108/723 atomic regions from SNP 32150 to 32750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,359 DEBUG Processing 345/660 atomic regions from SNP 103239 to 103839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,534 DEBUG Processing 58/717 atomic regions from SNP 17116 to 17716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,575 DEBUG Processing 346/660 atomic regions from SNP 103539 to 104139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,579 DEBUG Processing 109/723 atomic regions from SNP 32450 to 33050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,742 DEBUG Processing 59/717 atomic regions from SNP 17416 to 18016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:12,782 DEBUG Processing 347/660 atomic regions from SNP 103839 to 104439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,819 DEBUG Processing 110/723 atomic regions from SNP 32750 to 33350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,947 DEBUG Processing 60/717 atomic regions from SNP 17716 to 18316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,009 DEBUG Processing 348/660 atomic regions from SNP 104139 to 104739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,034 DEBUG Processing 111/723 atomic regions from SNP 33050 to 33650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,161 DEBUG Processing 61/717 atomic regions from SNP 18016 to 18616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,250 DEBUG Processing 349/660 atomic regions from SNP 104439 to 105039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,253 DEBUG Processing 112/723 atomic regions from SNP 33350 to 33950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,376 DEBUG Processing 62/717 atomic regions from SNP 18316 to 18916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,460 DEBUG Processing 350/660 atomic regions from SNP 104739 to 105339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,467 DEBUG Processing 113/723 atomic regions from SNP 33650 to 34250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,590 DEBUG Processing 63/717 atomic regions from SNP 18616 to 19216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,678 DEBUG Processing 114/723 atomic regions from SNP 33950 to 34550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,684 DEBUG Processing 351/660 atomic regions from SNP 105039 to 105639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,805 DEBUG Processing 64/717 atomic regions from SNP 18916 to 19516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:13,891 DEBUG Processing 115/723 atomic regions from SNP 34250 to 34850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,896 DEBUG Processing 352/660 atomic regions from SNP 105339 to 105939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,017 DEBUG Processing 65/717 atomic regions from SNP 19216 to 19816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,104 DEBUG Processing 116/723 atomic regions from SNP 34550 to 35150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,121 DEBUG Processing 353/660 atomic regions from SNP 105639 to 106239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,222 DEBUG Processing 66/717 atomic regions from SNP 19516 to 20116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,322 DEBUG Processing 117/723 atomic regions from SNP 34850 to 35450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,356 DEBUG Processing 354/660 atomic regions from SNP 105939 to 106539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,427 DEBUG Processing 67/717 atomic regions from SNP 19816 to 20416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,538 DEBUG Processing 118/723 atomic regions from SNP 35150 to 35750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,593 DEBUG Processing 355/660 atomic regions from SNP 106239 to 106839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,631 DEBUG Processing 68/717 atomic regions from SNP 20116 to 20716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,756 DEBUG Processing 119/723 atomic regions from SNP 35450 to 36050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,807 DEBUG Processing 356/660 atomic regions from SNP 106539 to 107139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,836 DEBUG Processing 69/717 atomic regions from SNP 20416 to 21016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:14,969 DEBUG Processing 120/723 atomic regions from SNP 35750 to 36350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,013 DEBUG Processing 357/660 atomic regions from SNP 106839 to 107439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,046 DEBUG Processing 70/717 atomic regions from SNP 20716 to 21316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,185 DEBUG Processing 121/723 atomic regions from SNP 36050 to 36650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,224 DEBUG Processing 358/660 atomic regions from SNP 107139 to 107739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,260 DEBUG Processing 71/717 atomic regions from SNP 21016 to 21616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,400 DEBUG Processing 122/723 atomic regions from SNP 36350 to 36950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,432 DEBUG Processing 359/660 atomic regions from SNP 107439 to 108039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,471 DEBUG Processing 72/717 atomic regions from SNP 21316 to 21916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,616 DEBUG Processing 123/723 atomic regions from SNP 36650 to 37250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,638 DEBUG Processing 360/660 atomic regions from SNP 107739 to 108339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,682 DEBUG Processing 73/717 atomic regions from SNP 21616 to 22216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:15,834 DEBUG Processing 124/723 atomic regions from SNP 36950 to 37550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,844 DEBUG Processing 361/660 atomic regions from SNP 108039 to 108639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,894 DEBUG Processing 74/717 atomic regions from SNP 21916 to 22516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,053 DEBUG Processing 125/723 atomic regions from SNP 37250 to 37850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,055 DEBUG Processing 362/660 atomic regions from SNP 108339 to 108939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,105 DEBUG Processing 75/717 atomic regions from SNP 22216 to 22816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,264 DEBUG Processing 363/660 atomic regions from SNP 108639 to 109239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,284 DEBUG Processing 126/723 atomic regions from SNP 37550 to 38150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,311 DEBUG Processing 76/717 atomic regions from SNP 22516 to 23116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,477 DEBUG Processing 364/660 atomic regions from SNP 108939 to 109539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,508 DEBUG Processing 127/723 atomic regions from SNP 37850 to 38450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,523 DEBUG Processing 77/717 atomic regions from SNP 22816 to 23416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,685 DEBUG Processing 365/660 atomic regions from SNP 109239 to 109839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,723 DEBUG Processing 128/723 atomic regions from SNP 38150 to 38750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,735 DEBUG Processing 78/717 atomic regions from SNP 23116 to 23716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:16,886 DEBUG Processing 366/660 atomic regions from SNP 109539 to 110139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,938 DEBUG Processing 129/723 atomic regions from SNP 38450 to 39050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,946 DEBUG Processing 79/717 atomic regions from SNP 23416 to 24016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,090 DEBUG Processing 367/660 atomic regions from SNP 109839 to 110439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,150 DEBUG Processing 130/723 atomic regions from SNP 38750 to 39350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,158 DEBUG Processing 80/717 atomic regions from SNP 23716 to 24316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,300 DEBUG Processing 368/660 atomic regions from SNP 110139 to 110739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,364 DEBUG Processing 131/723 atomic regions from SNP 39050 to 39650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,369 DEBUG Processing 81/717 atomic regions from SNP 24016 to 24616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,510 DEBUG Processing 369/660 atomic regions from SNP 110439 to 111039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,584 DEBUG Processing 82/717 atomic regions from SNP 24316 to 24916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,586 DEBUG Processing 132/723 atomic regions from SNP 39350 to 39950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,738 DEBUG Processing 370/660 atomic regions from SNP 110739 to 111339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,798 DEBUG Processing 83/717 atomic regions from SNP 24616 to 25216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:17,805 DEBUG Processing 133/723 atomic regions from SNP 39650 to 40250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,969 DEBUG Processing 371/660 atomic regions from SNP 111039 to 111639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,014 DEBUG Processing 84/717 atomic regions from SNP 24916 to 25516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,021 DEBUG Processing 134/723 atomic regions from SNP 39950 to 40550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,191 DEBUG Processing 372/660 atomic regions from SNP 111339 to 111939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,231 DEBUG Processing 85/717 atomic regions from SNP 25216 to 25816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,253 DEBUG Processing 135/723 atomic regions from SNP 40250 to 40850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,395 DEBUG Processing 373/660 atomic regions from SNP 111639 to 112239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,447 DEBUG Processing 86/717 atomic regions from SNP 25516 to 26116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,472 DEBUG Processing 136/723 atomic regions from SNP 40550 to 41150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,596 DEBUG Processing 374/660 atomic regions from SNP 111939 to 112539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,662 DEBUG Processing 87/717 atomic regions from SNP 25816 to 26416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,685 DEBUG Processing 137/723 atomic regions from SNP 40850 to 41450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,797 DEBUG Processing 375/660 atomic regions from SNP 112239 to 112839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,877 DEBUG Processing 88/717 atomic regions from SNP 26116 to 26716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:18,896 DEBUG Processing 138/723 atomic regions from SNP 41150 to 41750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,000 DEBUG Processing 376/660 atomic regions from SNP 112539 to 113139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,089 DEBUG Processing 89/717 atomic regions from SNP 26416 to 27016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,109 DEBUG Processing 139/723 atomic regions from SNP 41450 to 42050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,207 DEBUG Processing 377/660 atomic regions from SNP 112839 to 113439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,301 DEBUG Processing 90/717 atomic regions from SNP 26716 to 27316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,319 DEBUG Processing 140/723 atomic regions from SNP 41750 to 42350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,415 DEBUG Processing 378/660 atomic regions from SNP 113139 to 113739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,514 DEBUG Processing 91/717 atomic regions from SNP 27016 to 27616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,532 DEBUG Processing 141/723 atomic regions from SNP 42050 to 42650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,623 DEBUG Processing 379/660 atomic regions from SNP 113439 to 114039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,726 DEBUG Processing 92/717 atomic regions from SNP 27316 to 27916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,746 DEBUG Processing 142/723 atomic regions from SNP 42350 to 42950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,835 DEBUG Processing 380/660 atomic regions from SNP 113739 to 114339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,933 DEBUG Processing 93/717 atomic regions from SNP 27616 to 28216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:19,956 DEBUG Processing 143/723 atomic regions from SNP 42650 to 43250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,056 DEBUG Processing 381/660 atomic regions from SNP 114039 to 114639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,143 DEBUG Processing 94/717 atomic regions from SNP 27916 to 28516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,168 DEBUG Processing 144/723 atomic regions from SNP 42950 to 43550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,263 DEBUG Processing 382/660 atomic regions from SNP 114339 to 114939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,352 DEBUG Processing 95/717 atomic regions from SNP 28216 to 28816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,379 DEBUG Processing 145/723 atomic regions from SNP 43250 to 43850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,474 DEBUG Processing 383/660 atomic regions from SNP 114639 to 115239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,560 DEBUG Processing 96/717 atomic regions from SNP 28516 to 29116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,589 DEBUG Processing 146/723 atomic regions from SNP 43550 to 44150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,685 DEBUG Processing 384/660 atomic regions from SNP 114939 to 115539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,773 DEBUG Processing 97/717 atomic regions from SNP 28816 to 29416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:20,796 DEBUG Processing 147/723 atomic regions from SNP 43850 to 44450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,920 DEBUG Processing 385/660 atomic regions from SNP 115239 to 115839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,989 DEBUG Processing 98/717 atomic regions from SNP 29116 to 29716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,003 DEBUG Processing 148/723 atomic regions from SNP 44150 to 44750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,142 DEBUG Processing 386/660 atomic regions from SNP 115539 to 116139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,207 DEBUG Processing 99/717 atomic regions from SNP 29416 to 30016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,211 DEBUG Processing 149/723 atomic regions from SNP 44450 to 45050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,370 DEBUG Processing 387/660 atomic regions from SNP 115839 to 116439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,425 DEBUG Processing 150/723 atomic regions from SNP 44750 to 45350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,435 DEBUG Processing 100/717 atomic regions from SNP 29716 to 30316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,588 DEBUG Processing 388/660 atomic regions from SNP 116139 to 116739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,638 DEBUG Processing 151/723 atomic regions from SNP 45050 to 45650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,672 DEBUG Processing 101/717 atomic regions from SNP 30016 to 30616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:21,815 DEBUG Processing 389/660 atomic regions from SNP 116439 to 117039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,850 DEBUG Processing 152/723 atomic regions from SNP 45350 to 45950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,891 DEBUG Processing 102/717 atomic regions from SNP 30316 to 30916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,036 DEBUG Processing 390/660 atomic regions from SNP 116739 to 117339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,061 DEBUG Processing 153/723 atomic regions from SNP 45650 to 46250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,101 DEBUG Processing 103/717 atomic regions from SNP 30616 to 31216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,242 DEBUG Processing 391/660 atomic regions from SNP 117039 to 117639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,271 DEBUG Processing 154/723 atomic regions from SNP 45950 to 46550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,313 DEBUG Processing 104/717 atomic regions from SNP 30916 to 31516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,448 DEBUG Processing 392/660 atomic regions from SNP 117339 to 117939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,483 DEBUG Processing 155/723 atomic regions from SNP 46250 to 46850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,523 DEBUG Processing 105/717 atomic regions from SNP 31216 to 31816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,656 DEBUG Processing 393/660 atomic regions from SNP 117639 to 118239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,694 DEBUG Processing 156/723 atomic regions from SNP 46550 to 47150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,734 DEBUG Processing 106/717 atomic regions from SNP 31516 to 32116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:22,863 DEBUG Processing 394/660 atomic regions from SNP 117939 to 118539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,907 DEBUG Processing 157/723 atomic regions from SNP 46850 to 47450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,945 DEBUG Processing 107/717 atomic regions from SNP 31816 to 32416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,066 DEBUG Processing 395/660 atomic regions from SNP 118239 to 118839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,121 DEBUG Processing 158/723 atomic regions from SNP 47150 to 47750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,156 DEBUG Processing 108/717 atomic regions from SNP 32116 to 32716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,266 DEBUG Processing 396/660 atomic regions from SNP 118539 to 119139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,335 DEBUG Processing 159/723 atomic regions from SNP 47450 to 48050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,365 DEBUG Processing 109/717 atomic regions from SNP 32416 to 33016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,468 DEBUG Processing 397/660 atomic regions from SNP 118839 to 119439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,548 DEBUG Processing 160/723 atomic regions from SNP 47750 to 48350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,577 DEBUG Processing 110/717 atomic regions from SNP 32716 to 33316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,663 DEBUG Processing 398/660 atomic regions from SNP 119139 to 119739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,757 DEBUG Processing 161/723 atomic regions from SNP 48050 to 48650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,787 DEBUG Processing 111/717 atomic regions from SNP 33016 to 33616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:23,861 DEBUG Processing 399/660 atomic regions from SNP 119439 to 120039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,988 DEBUG Processing 162/723 atomic regions from SNP 48350 to 48950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,993 DEBUG Processing 112/717 atomic regions from SNP 33316 to 33916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,062 DEBUG Processing 400/660 atomic regions from SNP 119739 to 120339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,201 DEBUG Processing 113/717 atomic regions from SNP 33616 to 34216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,219 DEBUG Processing 163/723 atomic regions from SNP 48650 to 49250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,262 DEBUG Processing 401/660 atomic regions from SNP 120039 to 120639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,409 DEBUG Processing 114/717 atomic regions from SNP 33916 to 34516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,435 DEBUG Processing 164/723 atomic regions from SNP 48950 to 49550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,460 DEBUG Processing 402/660 atomic regions from SNP 120339 to 120939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,641 DEBUG Processing 115/717 atomic regions from SNP 34216 to 34816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:24,645 DEBUG Processing 165/723 atomic regions from SNP 49250 to 49850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,667 DEBUG Processing 403/660 atomic regions from SNP 120639 to 121239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,854 DEBUG Processing 166/723 atomic regions from SNP 49550 to 50150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,880 DEBUG Processing 404/660 atomic regions from SNP 120939 to 121539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,882 DEBUG Processing 116/717 atomic regions from SNP 34516 to 35116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,065 DEBUG Processing 167/723 atomic regions from SNP 49850 to 50450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,086 DEBUG Processing 405/660 atomic regions from SNP 121239 to 121839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,093 DEBUG Processing 117/717 atomic regions from SNP 34816 to 35416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,275 DEBUG Processing 168/723 atomic regions from SNP 50150 to 50750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,295 DEBUG Processing 406/660 atomic regions from SNP 121539 to 122139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,302 DEBUG Processing 118/717 atomic regions from SNP 35116 to 35716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,490 DEBUG Processing 169/723 atomic regions from SNP 50450 to 51050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,508 DEBUG Processing 119/717 atomic regions from SNP 35416 to 36016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,516 DEBUG Processing 407/660 atomic regions from SNP 121839 to 122439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,708 DEBUG Processing 170/723 atomic regions from SNP 50750 to 51350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,715 DEBUG Processing 120/717 atomic regions from SNP 35716 to 36316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,749 DEBUG Processing 408/660 atomic regions from SNP 122139 to 122739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,921 DEBUG Processing 171/723 atomic regions from SNP 51050 to 51650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,925 DEBUG Processing 121/717 atomic regions from SNP 36016 to 36616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:25,960 DEBUG Processing 409/660 atomic regions from SNP 122439 to 123039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,131 DEBUG Processing 172/723 atomic regions from SNP 51350 to 51950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,132 DEBUG Processing 122/717 atomic regions from SNP 36316 to 36916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,161 DEBUG Processing 410/660 atomic regions from SNP 122739 to 123339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,335 DEBUG Processing 123/717 atomic regions from SNP 36616 to 37216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,339 DEBUG Processing 173/723 atomic regions from SNP 51650 to 52250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,361 DEBUG Processing 411/660 atomic regions from SNP 123039 to 123639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,540 DEBUG Processing 124/717 atomic regions from SNP 36916 to 37516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,546 DEBUG Processing 174/723 atomic regions from SNP 51950 to 52550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,559 DEBUG Processing 412/660 atomic regions from SNP 123339 to 123939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,745 DEBUG Processing 125/717 atomic regions from SNP 37216 to 37816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,753 DEBUG Processing 175/723 atomic regions from SNP 52250 to 52850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,760 DEBUG Processing 413/660 atomic regions from SNP 123639 to 124239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,959 DEBUG Processing 126/717 atomic regions from SNP 37516 to 38116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:26,965 DEBUG Processing 176/723 atomic regions from SNP 52550 to 53150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,970 DEBUG Processing 414/660 atomic regions from SNP 123939 to 124539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,175 DEBUG Processing 127/717 atomic regions from SNP 37816 to 38416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,176 DEBUG Processing 177/723 atomic regions from SNP 52850 to 53450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,179 DEBUG Processing 415/660 atomic regions from SNP 124239 to 124839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,388 DEBUG Processing 178/723 atomic regions from SNP 53150 to 53750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,389 DEBUG Processing 416/660 atomic regions from SNP 124539 to 125139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,392 DEBUG Processing 128/717 atomic regions from SNP 38116 to 38716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,520 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:27,601 DEBUG Processing 179/723 atomic regions from SNP 53450 to 54050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,607 DEBUG Processing 417/660 atomic regions from SNP 124839 to 125439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,614 DEBUG Processing 129/717 atomic regions from SNP 38416 to 39016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:27,817 DEBUG Processing 180/723 atomic regions from SNP 53750 to 54350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,825 DEBUG Processing 418/660 atomic regions from SNP 125139 to 125739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,837 DEBUG Processing 130/717 atomic regions from SNP 38716 to 39316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,026 DEBUG Processing 181/723 atomic regions from SNP 54050 to 54650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,043 DEBUG Processing 419/660 atomic regions from SNP 125439 to 126039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,059 DEBUG Processing 131/717 atomic regions from SNP 39016 to 39616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,234 DEBUG Processing 182/723 atomic regions from SNP 54350 to 54950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,264 DEBUG Processing 420/660 atomic regions from SNP 125739 to 126339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,286 DEBUG Processing 132/717 atomic regions from SNP 39316 to 39916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,448 DEBUG Processing 183/723 atomic regions from SNP 54650 to 55250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,481 DEBUG Processing 421/660 atomic regions from SNP 126039 to 126639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,509 DEBUG Processing 133/717 atomic regions from SNP 39616 to 40216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,655 DEBUG Processing 184/723 atomic regions from SNP 54950 to 55550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,696 DEBUG Processing 422/660 atomic regions from SNP 126339 to 126939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,727 DEBUG Processing 134/717 atomic regions from SNP 39916 to 40516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:28,863 DEBUG Processing 185/723 atomic regions from SNP 55250 to 55850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,909 DEBUG Processing 423/660 atomic regions from SNP 126639 to 127239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,942 DEBUG Processing 135/717 atomic regions from SNP 40216 to 40816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,090 DEBUG Processing 186/723 atomic regions from SNP 55550 to 56150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,123 DEBUG Processing 424/660 atomic regions from SNP 126939 to 127539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,155 DEBUG Processing 136/717 atomic regions from SNP 40516 to 41116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,311 DEBUG Processing 187/723 atomic regions from SNP 55850 to 56450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,336 DEBUG Processing 425/660 atomic regions from SNP 127239 to 127839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,368 DEBUG Processing 137/717 atomic regions from SNP 40816 to 41416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,519 DEBUG Processing 188/723 atomic regions from SNP 56150 to 56750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,548 DEBUG Processing 426/660 atomic regions from SNP 127539 to 128139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,586 DEBUG Processing 138/717 atomic regions from SNP 41116 to 41716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,750 DEBUG Processing 189/723 atomic regions from SNP 56450 to 57050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,760 DEBUG Processing 427/660 atomic regions from SNP 127839 to 128439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,804 DEBUG Processing 139/717 atomic regions from SNP 41416 to 42016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:29,960 DEBUG Processing 190/723 atomic regions from SNP 56750 to 57350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,968 DEBUG Processing 428/660 atomic regions from SNP 128139 to 128739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,019 DEBUG Processing 140/717 atomic regions from SNP 41716 to 42316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,171 DEBUG Processing 191/723 atomic regions from SNP 57050 to 57650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,178 DEBUG Processing 429/660 atomic regions from SNP 128439 to 129039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,237 DEBUG Processing 141/717 atomic regions from SNP 42016 to 42616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,386 DEBUG Processing 192/723 atomic regions from SNP 57350 to 57950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,393 DEBUG Processing 430/660 atomic regions from SNP 128739 to 129339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,451 DEBUG Processing 142/717 atomic regions from SNP 42316 to 42916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,597 DEBUG Processing 193/723 atomic regions from SNP 57650 to 58250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,607 DEBUG Processing 431/660 atomic regions from SNP 129039 to 129639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,665 DEBUG Processing 143/717 atomic regions from SNP 42616 to 43216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:30,808 DEBUG Processing 194/723 atomic regions from SNP 57950 to 58550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,821 DEBUG Processing 432/660 atomic regions from SNP 129339 to 129939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,883 DEBUG Processing 144/717 atomic regions from SNP 42916 to 43516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,019 DEBUG Processing 195/723 atomic regions from SNP 58250 to 58850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,038 DEBUG Processing 433/660 atomic regions from SNP 129639 to 130239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,098 DEBUG Processing 145/717 atomic regions from SNP 43216 to 43816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,232 DEBUG Processing 196/723 atomic regions from SNP 58550 to 59150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,253 DEBUG Processing 434/660 atomic regions from SNP 129939 to 130539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,310 DEBUG Processing 146/717 atomic regions from SNP 43516 to 44116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,450 DEBUG Processing 197/723 atomic regions from SNP 58850 to 59450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,464 DEBUG Processing 435/660 atomic regions from SNP 130239 to 130839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,523 DEBUG Processing 147/717 atomic regions from SNP 43816 to 44416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,663 DEBUG Processing 198/723 atomic regions from SNP 59150 to 59750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,677 DEBUG Processing 436/660 atomic regions from SNP 130539 to 131139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,737 DEBUG Processing 148/717 atomic regions from SNP 44116 to 44716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:31,875 DEBUG Processing 199/723 atomic regions from SNP 59450 to 60050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,890 DEBUG Processing 437/660 atomic regions from SNP 130839 to 131439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,955 DEBUG Processing 149/717 atomic regions from SNP 44416 to 45016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,090 DEBUG Processing 200/723 atomic regions from SNP 59750 to 60350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,104 DEBUG Processing 438/660 atomic regions from SNP 131139 to 131739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,171 DEBUG Processing 150/717 atomic regions from SNP 44716 to 45316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,300 DEBUG Processing 201/723 atomic regions from SNP 60050 to 60650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,314 DEBUG Processing 439/660 atomic regions from SNP 131439 to 132039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,389 DEBUG Processing 151/717 atomic regions from SNP 45016 to 45616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,510 DEBUG Processing 202/723 atomic regions from SNP 60350 to 60950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,521 DEBUG Processing 440/660 atomic regions from SNP 131739 to 132339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,605 DEBUG Processing 152/717 atomic regions from SNP 45316 to 45916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,726 DEBUG Processing 203/723 atomic regions from SNP 60650 to 61250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,730 DEBUG Processing 441/660 atomic regions from SNP 132039 to 132639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,819 DEBUG Processing 153/717 atomic regions from SNP 45616 to 46216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:32,935 DEBUG Processing 442/660 atomic regions from SNP 132339 to 132939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,941 DEBUG Processing 204/723 atomic regions from SNP 60950 to 61550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,036 DEBUG Processing 154/717 atomic regions from SNP 45916 to 46516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,138 DEBUG Processing 443/660 atomic regions from SNP 132639 to 133239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,156 DEBUG Processing 205/723 atomic regions from SNP 61250 to 61850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,256 DEBUG Processing 155/717 atomic regions from SNP 46216 to 46816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,341 DEBUG Processing 444/660 atomic regions from SNP 132939 to 133539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,375 DEBUG Processing 206/723 atomic regions from SNP 61550 to 62150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,469 DEBUG Processing 156/717 atomic regions from SNP 46516 to 47116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,549 DEBUG Processing 445/660 atomic regions from SNP 133239 to 133839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,598 DEBUG Processing 207/723 atomic regions from SNP 61850 to 62450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,681 DEBUG Processing 157/717 atomic regions from SNP 46816 to 47416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,761 DEBUG Processing 446/660 atomic regions from SNP 133539 to 134139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,816 DEBUG Processing 208/723 atomic regions from SNP 62150 to 62750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,890 DEBUG Processing 158/717 atomic regions from SNP 47116 to 47716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:33,973 DEBUG Processing 447/660 atomic regions from SNP 133839 to 134439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,028 DEBUG Processing 209/723 atomic regions from SNP 62450 to 63050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,097 DEBUG Processing 159/717 atomic regions from SNP 47416 to 48016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,187 DEBUG Processing 448/660 atomic regions from SNP 134139 to 134739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,244 DEBUG Processing 210/723 atomic regions from SNP 62750 to 63350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,309 DEBUG Processing 160/717 atomic regions from SNP 47716 to 48316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,396 DEBUG Processing 449/660 atomic regions from SNP 134439 to 135039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,462 DEBUG Processing 211/723 atomic regions from SNP 63050 to 63650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,521 DEBUG Processing 161/717 atomic regions from SNP 48016 to 48616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,612 DEBUG Processing 450/660 atomic regions from SNP 134739 to 135339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,676 DEBUG Processing 212/723 atomic regions from SNP 63350 to 63950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,736 DEBUG Processing 162/717 atomic regions from SNP 48316 to 48916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:34,828 DEBUG Processing 451/660 atomic regions from SNP 135039 to 135639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,895 DEBUG Processing 213/723 atomic regions from SNP 63650 to 64250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,949 DEBUG Processing 163/717 atomic regions from SNP 48616 to 49216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,038 DEBUG Processing 452/660 atomic regions from SNP 135339 to 135939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,111 DEBUG Processing 214/723 atomic regions from SNP 63950 to 64550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,164 DEBUG Processing 164/717 atomic regions from SNP 48916 to 49516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,252 DEBUG Processing 453/660 atomic regions from SNP 135639 to 136239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,336 DEBUG Processing 215/723 atomic regions from SNP 64250 to 64850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,385 DEBUG Processing 165/717 atomic regions from SNP 49216 to 49816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,463 DEBUG Processing 454/660 atomic regions from SNP 135939 to 136539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,563 DEBUG Processing 216/723 atomic regions from SNP 64550 to 65150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,617 DEBUG Processing 166/717 atomic regions from SNP 49516 to 50116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,667 DEBUG Processing 455/660 atomic regions from SNP 136239 to 136839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,777 DEBUG Processing 217/723 atomic regions from SNP 64850 to 65450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,843 DEBUG Processing 167/717 atomic regions from SNP 49816 to 50416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:35,869 DEBUG Processing 456/660 atomic regions from SNP 136539 to 137139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,011 DEBUG Processing 218/723 atomic regions from SNP 65150 to 65750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,056 DEBUG Processing 168/717 atomic regions from SNP 50116 to 50716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,077 DEBUG Processing 457/660 atomic regions from SNP 136839 to 137439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,249 DEBUG Processing 219/723 atomic regions from SNP 65450 to 66050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,297 DEBUG Processing 458/660 atomic regions from SNP 137139 to 137739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,305 DEBUG Processing 169/717 atomic regions from SNP 50416 to 51016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,475 DEBUG Processing 220/723 atomic regions from SNP 65750 to 66350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,519 DEBUG Processing 459/660 atomic regions from SNP 137439 to 138039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,554 DEBUG Processing 170/717 atomic regions from SNP 50716 to 51316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,701 DEBUG Processing 221/723 atomic regions from SNP 66050 to 66650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,741 DEBUG Processing 460/660 atomic regions from SNP 137739 to 138339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,778 DEBUG Processing 171/717 atomic regions from SNP 51016 to 51616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:36,928 DEBUG Processing 222/723 atomic regions from SNP 66350 to 66950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,961 DEBUG Processing 461/660 atomic regions from SNP 138039 to 138639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,011 DEBUG Processing 172/717 atomic regions from SNP 51316 to 51916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,154 DEBUG Processing 223/723 atomic regions from SNP 66650 to 67250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,180 DEBUG Processing 462/660 atomic regions from SNP 138339 to 138939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,229 DEBUG Processing 173/717 atomic regions from SNP 51616 to 52216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,380 DEBUG Processing 224/723 atomic regions from SNP 66950 to 67550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,393 DEBUG Processing 463/660 atomic regions from SNP 138639 to 139239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,447 DEBUG Processing 174/717 atomic regions from SNP 51916 to 52516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,598 DEBUG Processing 225/723 atomic regions from SNP 67250 to 67850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,599 DEBUG Processing 464/660 atomic regions from SNP 138939 to 139539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,665 DEBUG Processing 175/717 atomic regions from SNP 52216 to 52816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:37,811 DEBUG Processing 465/660 atomic regions from SNP 139239 to 139839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,817 DEBUG Processing 226/723 atomic regions from SNP 67550 to 68150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,887 DEBUG Processing 176/717 atomic regions from SNP 52516 to 53116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,029 DEBUG Processing 466/660 atomic regions from SNP 139539 to 140139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,034 DEBUG Processing 227/723 atomic regions from SNP 67850 to 68450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,110 DEBUG Processing 177/717 atomic regions from SNP 52816 to 53416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,251 DEBUG Processing 467/660 atomic regions from SNP 139839 to 140439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,254 DEBUG Processing 228/723 atomic regions from SNP 68150 to 68750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,331 DEBUG Processing 178/717 atomic regions from SNP 53116 to 53716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,475 DEBUG Processing 468/660 atomic regions from SNP 140139 to 140739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,477 DEBUG Processing 229/723 atomic regions from SNP 68450 to 69050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,560 DEBUG Processing 179/717 atomic regions from SNP 53416 to 54016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,690 DEBUG Processing 469/660 atomic regions from SNP 140439 to 141039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,699 DEBUG Processing 230/723 atomic regions from SNP 68750 to 69350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,783 DEBUG Processing 180/717 atomic regions from SNP 53716 to 54316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:38,906 DEBUG Processing 470/660 atomic regions from SNP 140739 to 141339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,923 DEBUG Processing 231/723 atomic regions from SNP 69050 to 69650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,010 DEBUG Processing 181/717 atomic regions from SNP 54016 to 54616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,119 DEBUG Processing 471/660 atomic regions from SNP 141039 to 141639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,151 DEBUG Processing 232/723 atomic regions from SNP 69350 to 69950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,237 DEBUG Processing 182/717 atomic regions from SNP 54316 to 54916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,336 DEBUG Processing 472/660 atomic regions from SNP 141339 to 141939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,387 DEBUG Processing 233/723 atomic regions from SNP 69650 to 70250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,455 DEBUG Processing 183/717 atomic regions from SNP 54616 to 55216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,557 DEBUG Processing 473/660 atomic regions from SNP 141639 to 142239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,643 DEBUG Processing 234/723 atomic regions from SNP 69950 to 70550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,673 DEBUG Processing 184/717 atomic regions from SNP 54916 to 55516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:39,781 DEBUG Processing 474/660 atomic regions from SNP 141939 to 142539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,877 DEBUG Processing 235/723 atomic regions from SNP 70250 to 70850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,894 DEBUG Processing 185/717 atomic regions from SNP 55216 to 55816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,004 DEBUG Processing 475/660 atomic regions from SNP 142239 to 142839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,099 DEBUG Processing 236/723 atomic regions from SNP 70550 to 71150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,117 DEBUG Processing 186/717 atomic regions from SNP 55516 to 56116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,226 DEBUG Processing 476/660 atomic regions from SNP 142539 to 143139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,323 DEBUG Processing 237/723 atomic regions from SNP 70850 to 71450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,335 DEBUG Processing 187/717 atomic regions from SNP 55816 to 56416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,445 DEBUG Processing 477/660 atomic regions from SNP 142839 to 143439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,542 DEBUG Processing 238/723 atomic regions from SNP 71150 to 71750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,557 DEBUG Processing 188/717 atomic regions from SNP 56116 to 56716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,662 DEBUG Processing 478/660 atomic regions from SNP 143139 to 143739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,783 DEBUG Processing 189/717 atomic regions from SNP 56416 to 57016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:40,788 DEBUG Processing 239/723 atomic regions from SNP 71450 to 72050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,882 DEBUG Processing 479/660 atomic regions from SNP 143439 to 144039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,003 DEBUG Processing 190/717 atomic regions from SNP 56716 to 57316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,036 DEBUG Processing 240/723 atomic regions from SNP 71750 to 72350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,102 DEBUG Processing 480/660 atomic regions from SNP 143739 to 144339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,221 DEBUG Processing 191/717 atomic regions from SNP 57016 to 57616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,295 DEBUG Processing 241/723 atomic regions from SNP 72050 to 72650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,323 DEBUG Processing 481/660 atomic regions from SNP 144039 to 144639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,437 DEBUG Processing 192/717 atomic regions from SNP 57316 to 57916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,546 DEBUG Processing 482/660 atomic regions from SNP 144339 to 144939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,550 DEBUG Processing 242/723 atomic regions from SNP 72350 to 72950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,657 DEBUG Processing 193/717 atomic regions from SNP 57616 to 58216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,766 DEBUG Processing 483/660 atomic regions from SNP 144639 to 145239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,798 DEBUG Processing 243/723 atomic regions from SNP 72650 to 73250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,872 DEBUG Processing 194/717 atomic regions from SNP 57916 to 58516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:41,985 DEBUG Processing 484/660 atomic regions from SNP 144939 to 145539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,039 DEBUG Processing 244/723 atomic regions from SNP 72950 to 73550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,095 DEBUG Processing 195/717 atomic regions from SNP 58216 to 58816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,208 DEBUG Processing 485/660 atomic regions from SNP 145239 to 145839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,268 DEBUG Processing 245/723 atomic regions from SNP 73250 to 73850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,320 DEBUG Processing 196/717 atomic regions from SNP 58516 to 59116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,428 DEBUG Processing 486/660 atomic regions from SNP 145539 to 146139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,491 DEBUG Processing 246/723 atomic regions from SNP 73550 to 74150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,542 DEBUG Processing 197/717 atomic regions from SNP 58816 to 59416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,660 DEBUG Processing 487/660 atomic regions from SNP 145839 to 146439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,766 DEBUG Processing 247/723 atomic regions from SNP 73850 to 74450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,815 DEBUG Processing 198/717 atomic regions from SNP 59116 to 59716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:42,904 DEBUG Processing 488/660 atomic regions from SNP 146139 to 146739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,008 DEBUG Processing 248/723 atomic regions from SNP 74150 to 74750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,045 DEBUG Processing 199/717 atomic regions from SNP 59416 to 60016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,125 DEBUG Processing 489/660 atomic regions from SNP 146439 to 147039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,232 DEBUG Processing 249/723 atomic regions from SNP 74450 to 75050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,272 DEBUG Processing 200/717 atomic regions from SNP 59716 to 60316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,347 DEBUG Processing 490/660 atomic regions from SNP 146739 to 147339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,489 DEBUG Processing 250/723 atomic regions from SNP 74750 to 75350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,505 DEBUG Processing 201/717 atomic regions from SNP 60016 to 60616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,575 DEBUG Processing 491/660 atomic regions from SNP 147039 to 147639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,734 DEBUG Processing 202/717 atomic regions from SNP 60316 to 60916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:43,752 DEBUG Processing 251/723 atomic regions from SNP 75050 to 75650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,808 DEBUG Processing 492/660 atomic regions from SNP 147339 to 147939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,965 DEBUG Processing 203/717 atomic regions from SNP 60616 to 61216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,007 DEBUG Processing 252/723 atomic regions from SNP 75350 to 75950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,043 DEBUG Processing 493/660 atomic regions from SNP 147639 to 148239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,193 DEBUG Processing 204/717 atomic regions from SNP 60916 to 61516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,262 DEBUG Processing 253/723 atomic regions from SNP 75650 to 76250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,275 DEBUG Processing 494/660 atomic regions from SNP 147939 to 148539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,422 DEBUG Processing 205/717 atomic regions from SNP 61216 to 61816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,492 DEBUG Processing 254/723 atomic regions from SNP 75950 to 76550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,499 DEBUG Processing 495/660 atomic regions from SNP 148239 to 148839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,645 DEBUG Processing 206/717 atomic regions from SNP 61516 to 62116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,714 DEBUG Processing 255/723 atomic regions from SNP 76250 to 76850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,725 DEBUG Processing 496/660 atomic regions from SNP 148539 to 149139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,871 DEBUG Processing 207/717 atomic regions from SNP 61816 to 62416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:44,930 DEBUG Processing 256/723 atomic regions from SNP 76550 to 77150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,950 DEBUG Processing 497/660 atomic regions from SNP 148839 to 149439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,950 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:53:44,952 DEBUG chr13: Signal quantile: 0.991. signal threshold: 18. Best RMSEA: 0.014 2025-01-31 09:53:45,097 DEBUG Processing 208/717 atomic regions from SNP 62116 to 62716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,181 DEBUG Processing 257/723 atomic regions from SNP 76850 to 77450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,209 DEBUG Processing 498/660 atomic regions from SNP 149139 to 149739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,349 DEBUG Processing 209/717 atomic regions from SNP 62416 to 63016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,412 DEBUG Processing 258/723 atomic regions from SNP 77150 to 77750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,432 DEBUG Processing 499/660 atomic regions from SNP 149439 to 150039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,569 DEBUG Processing 210/717 atomic regions from SNP 62716 to 63316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,643 DEBUG Processing 259/723 atomic regions from SNP 77450 to 78050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,657 DEBUG Processing 500/660 atomic regions from SNP 149739 to 150339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,798 DEBUG Processing 211/717 atomic regions from SNP 63016 to 63616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:45,878 DEBUG Processing 260/723 atomic regions from SNP 77750 to 78350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,885 DEBUG Processing 501/660 atomic regions from SNP 150039 to 150639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,031 DEBUG Processing 212/717 atomic regions from SNP 63316 to 63916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,103 DEBUG Processing 261/723 atomic regions from SNP 78050 to 78650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,112 DEBUG Processing 502/660 atomic regions from SNP 150339 to 150939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,260 DEBUG Processing 213/717 atomic regions from SNP 63616 to 64216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,327 DEBUG Processing 262/723 atomic regions from SNP 78350 to 78950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,340 DEBUG Processing 503/660 atomic regions from SNP 150639 to 151239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,488 DEBUG Processing 214/717 atomic regions from SNP 63916 to 64516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,559 DEBUG Processing 263/723 atomic regions from SNP 78650 to 79250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,568 DEBUG Processing 504/660 atomic regions from SNP 150939 to 151539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,716 DEBUG Processing 215/717 atomic regions from SNP 64216 to 64816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:46,791 DEBUG Processing 264/723 atomic regions from SNP 78950 to 79550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,795 DEBUG Processing 505/660 atomic regions from SNP 151239 to 151839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,936 DEBUG Processing 216/717 atomic regions from SNP 64516 to 65116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,015 DEBUG Processing 506/660 atomic regions from SNP 151539 to 152139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,017 DEBUG Processing 265/723 atomic regions from SNP 79250 to 79850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,156 DEBUG Processing 217/717 atomic regions from SNP 64816 to 65416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,239 DEBUG Processing 507/660 atomic regions from SNP 151839 to 152439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,245 DEBUG Processing 266/723 atomic regions from SNP 79550 to 80150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,355 DEBUG chr13 total SNP count: 203503 2025-01-31 09:53:47,355 DEBUG chr13 length: 120421639 2025-01-31 09:53:47,355 DEBUG ----------------------------------------- 2025-01-31 09:53:47,355 INFO Processing SNPs in chr13 2025-01-31 09:53:47,384 DEBUG Processing 218/717 atomic regions from SNP 65116 to 65716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,457 DEBUG Processing 508/660 atomic regions from SNP 152139 to 152739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,478 DEBUG Processing 267/723 atomic regions from SNP 79850 to 80450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,558 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 203503)] 2025-01-31 09:53:47,606 DEBUG Processing 219/717 atomic regions from SNP 65416 to 66016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,684 DEBUG Processing 509/660 atomic regions from SNP 152439 to 153039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,700 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:47,705 DEBUG Processing 268/723 atomic regions from SNP 80150 to 80750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,831 DEBUG Processing 220/717 atomic regions from SNP 65716 to 66316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:47,908 DEBUG Processing 510/660 atomic regions from SNP 152739 to 153339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,928 DEBUG Processing 269/723 atomic regions from SNP 80450 to 81050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,053 DEBUG Processing 221/717 atomic regions from SNP 66016 to 66616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,131 DEBUG Processing 511/660 atomic regions from SNP 153039 to 153639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,150 DEBUG Processing 270/723 atomic regions from SNP 80750 to 81350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,285 DEBUG Processing 222/717 atomic regions from SNP 66316 to 66916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,359 DEBUG Processing 512/660 atomic regions from SNP 153339 to 153939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,371 DEBUG Processing 271/723 atomic regions from SNP 81050 to 81650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,509 DEBUG Processing 223/717 atomic regions from SNP 66616 to 67216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,584 DEBUG Processing 513/660 atomic regions from SNP 153639 to 154239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,589 DEBUG Processing 272/723 atomic regions from SNP 81350 to 81950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,730 DEBUG Processing 224/717 atomic regions from SNP 66916 to 67516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:48,807 DEBUG Processing 273/723 atomic regions from SNP 81650 to 82250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,811 DEBUG Processing 514/660 atomic regions from SNP 153939 to 154539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,961 DEBUG Processing 225/717 atomic regions from SNP 67216 to 67816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,028 DEBUG Processing 274/723 atomic regions from SNP 81950 to 82550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,050 DEBUG Processing 515/660 atomic regions from SNP 154239 to 154839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,190 DEBUG Processing 226/717 atomic regions from SNP 67516 to 68116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,253 DEBUG Processing 275/723 atomic regions from SNP 82250 to 82850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,283 DEBUG Processing 516/660 atomic regions from SNP 154539 to 155139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,414 DEBUG Processing 227/717 atomic regions from SNP 67816 to 68416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,469 DEBUG Processing 276/723 atomic regions from SNP 82550 to 83150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,504 DEBUG Processing 517/660 atomic regions from SNP 154839 to 155439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,641 DEBUG Processing 228/717 atomic regions from SNP 68116 to 68716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,690 DEBUG Processing 277/723 atomic regions from SNP 82850 to 83450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,726 DEBUG Processing 518/660 atomic regions from SNP 155139 to 155739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,870 DEBUG Processing 229/717 atomic regions from SNP 68416 to 69016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:49,917 DEBUG Processing 278/723 atomic regions from SNP 83150 to 83750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,952 DEBUG Processing 519/660 atomic regions from SNP 155439 to 156039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,093 DEBUG Processing 230/717 atomic regions from SNP 68716 to 69316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,137 DEBUG Processing 279/723 atomic regions from SNP 83450 to 84050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,180 DEBUG Processing 520/660 atomic regions from SNP 155739 to 156339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,323 DEBUG Processing 231/717 atomic regions from SNP 69016 to 69616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,382 DEBUG Processing 280/723 atomic regions from SNP 83750 to 84350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,414 DEBUG Processing 521/660 atomic regions from SNP 156039 to 156639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,549 DEBUG Processing 232/717 atomic regions from SNP 69316 to 69916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,622 DEBUG Processing 281/723 atomic regions from SNP 84050 to 84650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,637 DEBUG Processing 522/660 atomic regions from SNP 156339 to 156939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,770 DEBUG Processing 233/717 atomic regions from SNP 69616 to 70216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:50,854 DEBUG Processing 282/723 atomic regions from SNP 84350 to 84950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,861 DEBUG Processing 523/660 atomic regions from SNP 156639 to 157239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,994 DEBUG Processing 234/717 atomic regions from SNP 69916 to 70516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,069 DEBUG Processing 283/723 atomic regions from SNP 84650 to 85250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,083 DEBUG Processing 524/660 atomic regions from SNP 156939 to 157539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,225 DEBUG Processing 235/717 atomic regions from SNP 70216 to 70816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,285 DEBUG Processing 284/723 atomic regions from SNP 84950 to 85550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,316 DEBUG Processing 525/660 atomic regions from SNP 157239 to 157839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,449 DEBUG Processing 236/717 atomic regions from SNP 70516 to 71116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,502 DEBUG Processing 285/723 atomic regions from SNP 85250 to 85850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,541 DEBUG Processing 526/660 atomic regions from SNP 157539 to 158139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,668 DEBUG Processing 237/717 atomic regions from SNP 70816 to 71416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,714 DEBUG Processing 286/723 atomic regions from SNP 85550 to 86150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,765 DEBUG Processing 527/660 atomic regions from SNP 157839 to 158439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,886 DEBUG Processing 238/717 atomic regions from SNP 71116 to 71716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:51,928 DEBUG Processing 287/723 atomic regions from SNP 85850 to 86450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,997 DEBUG Processing 528/660 atomic regions from SNP 158139 to 158739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,108 DEBUG Processing 239/717 atomic regions from SNP 71416 to 72016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,146 DEBUG Processing 288/723 atomic regions from SNP 86150 to 86750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,220 DEBUG Processing 529/660 atomic regions from SNP 158439 to 159039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,334 DEBUG Processing 240/717 atomic regions from SNP 71716 to 72316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,366 DEBUG Processing 289/723 atomic regions from SNP 86450 to 87050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,460 DEBUG Processing 530/660 atomic regions from SNP 158739 to 159339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,562 DEBUG Processing 241/717 atomic regions from SNP 72016 to 72616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,591 DEBUG Processing 290/723 atomic regions from SNP 86750 to 87350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,674 DEBUG Processing 531/660 atomic regions from SNP 159039 to 159639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,795 DEBUG Processing 242/717 atomic regions from SNP 72316 to 72916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:52,811 DEBUG Processing 291/723 atomic regions from SNP 87050 to 87650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,895 DEBUG Processing 532/660 atomic regions from SNP 159339 to 159939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,018 DEBUG Processing 243/717 atomic regions from SNP 72616 to 73216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,029 DEBUG Processing 292/723 atomic regions from SNP 87350 to 87950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,109 DEBUG Processing 533/660 atomic regions from SNP 159639 to 160239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,238 DEBUG Processing 244/717 atomic regions from SNP 72916 to 73516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,248 DEBUG Processing 293/723 atomic regions from SNP 87650 to 88250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,328 DEBUG Processing 534/660 atomic regions from SNP 159939 to 160539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,459 DEBUG Processing 245/717 atomic regions from SNP 73216 to 73816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,466 DEBUG Processing 294/723 atomic regions from SNP 87950 to 88550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,550 DEBUG Processing 535/660 atomic regions from SNP 160239 to 160839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,680 DEBUG Processing 246/717 atomic regions from SNP 73516 to 74116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,682 DEBUG Processing 295/723 atomic regions from SNP 88250 to 88850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,772 DEBUG Processing 536/660 atomic regions from SNP 160539 to 161139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,900 DEBUG Processing 296/723 atomic regions from SNP 88550 to 89150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,904 DEBUG Processing 247/717 atomic regions from SNP 73816 to 74416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:53,984 DEBUG Processing 537/660 atomic regions from SNP 160839 to 161439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,123 DEBUG Processing 297/723 atomic regions from SNP 88850 to 89450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,124 DEBUG Processing 248/717 atomic regions from SNP 74116 to 74716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,217 DEBUG Processing 538/660 atomic regions from SNP 161139 to 161739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,347 DEBUG Processing 249/717 atomic regions from SNP 74416 to 75016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,353 DEBUG Processing 298/723 atomic regions from SNP 89150 to 89750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,450 DEBUG Processing 539/660 atomic regions from SNP 161439 to 162039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,567 DEBUG Processing 250/717 atomic regions from SNP 74716 to 75316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,584 DEBUG Processing 299/723 atomic regions from SNP 89450 to 90050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,662 DEBUG Processing 540/660 atomic regions from SNP 161739 to 162339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,791 DEBUG Processing 251/717 atomic regions from SNP 75016 to 75616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:54,810 DEBUG Processing 300/723 atomic regions from SNP 89750 to 90350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,870 DEBUG Processing 541/660 atomic regions from SNP 162039 to 162639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,020 DEBUG Processing 252/717 atomic regions from SNP 75316 to 75916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,038 DEBUG Processing 301/723 atomic regions from SNP 90050 to 90650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,083 DEBUG Processing 542/660 atomic regions from SNP 162339 to 162939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,241 DEBUG Processing 253/717 atomic regions from SNP 75616 to 76216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,271 DEBUG Processing 302/723 atomic regions from SNP 90350 to 90950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,304 DEBUG Processing 543/660 atomic regions from SNP 162639 to 163239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,465 DEBUG Processing 254/717 atomic regions from SNP 75916 to 76516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,506 DEBUG Processing 303/723 atomic regions from SNP 90650 to 91250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,526 DEBUG Processing 544/660 atomic regions from SNP 162939 to 163539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,686 DEBUG Processing 255/717 atomic regions from SNP 76216 to 76816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,743 DEBUG Processing 545/660 atomic regions from SNP 163239 to 163839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,764 DEBUG Processing 304/723 atomic regions from SNP 90950 to 91550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,909 DEBUG Processing 256/717 atomic regions from SNP 76516 to 77116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:55,967 DEBUG Processing 546/660 atomic regions from SNP 163539 to 164139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,026 DEBUG Processing 305/723 atomic regions from SNP 91250 to 91850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,135 DEBUG Processing 257/717 atomic regions from SNP 76816 to 77416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,187 DEBUG Processing 547/660 atomic regions from SNP 163839 to 164439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,258 DEBUG Processing 306/723 atomic regions from SNP 91550 to 92150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,358 DEBUG Processing 258/717 atomic regions from SNP 77116 to 77716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,405 DEBUG Processing 548/660 atomic regions from SNP 164139 to 164739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,489 DEBUG Processing 307/723 atomic regions from SNP 91850 to 92450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,583 DEBUG Processing 259/717 atomic regions from SNP 77416 to 78016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,623 DEBUG Processing 549/660 atomic regions from SNP 164439 to 165039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,720 DEBUG Processing 308/723 atomic regions from SNP 92150 to 92750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,808 DEBUG Processing 260/717 atomic regions from SNP 77716 to 78316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:56,845 DEBUG Processing 550/660 atomic regions from SNP 164739 to 165339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,946 DEBUG Processing 309/723 atomic regions from SNP 92450 to 93050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,022 DEBUG Processing 261/717 atomic regions from SNP 78016 to 78616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,059 DEBUG Processing 551/660 atomic regions from SNP 165039 to 165639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,175 DEBUG Processing 310/723 atomic regions from SNP 92750 to 93350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,230 DEBUG Processing 262/717 atomic regions from SNP 78316 to 78916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,271 DEBUG Processing 552/660 atomic regions from SNP 165339 to 165939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,397 DEBUG Processing 311/723 atomic regions from SNP 93050 to 93650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,438 DEBUG Processing 263/717 atomic regions from SNP 78616 to 79216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,484 DEBUG Processing 553/660 atomic regions from SNP 165639 to 166239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,620 DEBUG Processing 312/723 atomic regions from SNP 93350 to 93950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,662 DEBUG Processing 264/717 atomic regions from SNP 78916 to 79516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,709 DEBUG Processing 554/660 atomic regions from SNP 165939 to 166539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,843 DEBUG Processing 313/723 atomic regions from SNP 93650 to 94250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,874 DEBUG Processing 265/717 atomic regions from SNP 79216 to 79816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:57,921 DEBUG Processing 555/660 atomic regions from SNP 166239 to 166839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,067 DEBUG Processing 314/723 atomic regions from SNP 93950 to 94550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,088 DEBUG Processing 266/717 atomic regions from SNP 79516 to 80116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,134 DEBUG Processing 556/660 atomic regions from SNP 166539 to 167139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,294 DEBUG Processing 315/723 atomic regions from SNP 94250 to 94850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,330 DEBUG Processing 267/717 atomic regions from SNP 79816 to 80416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,344 DEBUG Processing 557/660 atomic regions from SNP 166839 to 167439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,528 DEBUG Processing 316/723 atomic regions from SNP 94550 to 95150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,548 DEBUG Processing 558/660 atomic regions from SNP 167139 to 167739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,560 DEBUG Processing 268/717 atomic regions from SNP 80116 to 80716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,753 DEBUG Processing 559/660 atomic regions from SNP 167439 to 168039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,770 DEBUG Processing 317/723 atomic regions from SNP 94850 to 95450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,771 DEBUG Processing 269/717 atomic regions from SNP 80416 to 81016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:58,958 DEBUG Processing 560/660 atomic regions from SNP 167739 to 168339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,985 DEBUG Processing 270/717 atomic regions from SNP 80716 to 81316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,018 DEBUG Processing 318/723 atomic regions from SNP 95150 to 95750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,166 DEBUG Processing 561/660 atomic regions from SNP 168039 to 168639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,199 DEBUG Processing 271/717 atomic regions from SNP 81016 to 81616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,282 DEBUG Processing 319/723 atomic regions from SNP 95450 to 96050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,381 DEBUG Processing 562/660 atomic regions from SNP 168339 to 168939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,418 DEBUG Processing 272/717 atomic regions from SNP 81316 to 81916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,539 DEBUG Processing 320/723 atomic regions from SNP 95750 to 96350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,585 DEBUG Processing 563/660 atomic regions from SNP 168639 to 169239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,633 DEBUG Processing 273/717 atomic regions from SNP 81616 to 82216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,793 DEBUG Processing 564/660 atomic regions from SNP 168939 to 169539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,805 DEBUG Processing 321/723 atomic regions from SNP 96050 to 96650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,852 DEBUG Processing 274/717 atomic regions from SNP 81916 to 82516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:53:59,998 DEBUG Processing 565/660 atomic regions from SNP 169239 to 169839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,066 DEBUG Processing 322/723 atomic regions from SNP 96350 to 96950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,116 DEBUG Processing 275/717 atomic regions from SNP 82216 to 82816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,327 DEBUG Processing 566/660 atomic regions from SNP 169539 to 170139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,453 DEBUG Processing 276/717 atomic regions from SNP 82516 to 83116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,454 DEBUG Processing 323/723 atomic regions from SNP 96650 to 97250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,550 DEBUG Processing 567/660 atomic regions from SNP 169839 to 170439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,668 DEBUG Processing 277/717 atomic regions from SNP 82816 to 83416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,722 DEBUG Processing 324/723 atomic regions from SNP 96950 to 97550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,756 DEBUG Processing 568/660 atomic regions from SNP 170139 to 170739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,869 DEBUG Processing 278/717 atomic regions from SNP 83116 to 83716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:00,965 DEBUG Processing 569/660 atomic regions from SNP 170439 to 171039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,974 DEBUG Processing 325/723 atomic regions from SNP 97250 to 97850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,081 DEBUG Processing 279/717 atomic regions from SNP 83416 to 84016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,179 DEBUG Processing 570/660 atomic regions from SNP 170739 to 171339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,239 DEBUG Processing 326/723 atomic regions from SNP 97550 to 98150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,297 DEBUG Processing 280/717 atomic regions from SNP 83716 to 84316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,397 DEBUG Processing 571/660 atomic regions from SNP 171039 to 171639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,524 DEBUG Processing 327/723 atomic regions from SNP 97850 to 98450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,542 DEBUG Processing 281/717 atomic regions from SNP 84016 to 84616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,614 DEBUG Processing 572/660 atomic regions from SNP 171339 to 171939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,762 DEBUG Processing 282/717 atomic regions from SNP 84316 to 84916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:01,801 DEBUG Processing 328/723 atomic regions from SNP 98150 to 98750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,832 DEBUG Processing 573/660 atomic regions from SNP 171639 to 172239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,002 DEBUG Processing 283/717 atomic regions from SNP 84616 to 85216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,045 DEBUG Processing 574/660 atomic regions from SNP 171939 to 172539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,075 DEBUG Processing 329/723 atomic regions from SNP 98450 to 99050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,237 DEBUG Processing 284/717 atomic regions from SNP 84916 to 85516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,250 DEBUG Processing 575/660 atomic regions from SNP 172239 to 172839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,334 DEBUG Processing 330/723 atomic regions from SNP 98750 to 99350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,452 DEBUG Processing 576/660 atomic regions from SNP 172539 to 173139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,463 DEBUG Processing 285/717 atomic regions from SNP 85216 to 85816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,576 DEBUG Processing 331/723 atomic regions from SNP 99050 to 99650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,650 DEBUG Processing 577/660 atomic regions from SNP 172839 to 173439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,678 DEBUG Processing 286/717 atomic regions from SNP 85516 to 86116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:02,813 DEBUG Processing 332/723 atomic regions from SNP 99350 to 99950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,851 DEBUG Processing 578/660 atomic regions from SNP 173139 to 173739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,888 DEBUG Processing 287/717 atomic regions from SNP 85816 to 86416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,051 DEBUG Processing 579/660 atomic regions from SNP 173439 to 174039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,058 DEBUG Processing 333/723 atomic regions from SNP 99650 to 100250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,116 DEBUG Processing 288/717 atomic regions from SNP 86116 to 86716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,257 DEBUG Processing 580/660 atomic regions from SNP 173739 to 174339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,306 DEBUG Processing 334/723 atomic regions from SNP 99950 to 100550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,338 DEBUG Processing 289/717 atomic regions from SNP 86416 to 87016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,455 DEBUG Processing 581/660 atomic regions from SNP 174039 to 174639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,543 DEBUG Processing 290/717 atomic regions from SNP 86716 to 87316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,545 DEBUG Processing 335/723 atomic regions from SNP 100250 to 100850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,660 DEBUG Processing 582/660 atomic regions from SNP 174339 to 174939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,756 DEBUG Processing 291/717 atomic regions from SNP 87016 to 87616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:03,807 DEBUG Processing 336/723 atomic regions from SNP 100550 to 101150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,876 DEBUG Processing 583/660 atomic regions from SNP 174639 to 175239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,972 DEBUG Processing 292/717 atomic regions from SNP 87316 to 87916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,058 DEBUG Processing 337/723 atomic regions from SNP 100850 to 101450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,088 DEBUG Processing 584/660 atomic regions from SNP 174939 to 175539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,186 DEBUG Processing 293/717 atomic regions from SNP 87616 to 88216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,287 DEBUG Processing 338/723 atomic regions from SNP 101150 to 101750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,300 DEBUG Processing 585/660 atomic regions from SNP 175239 to 175839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,399 DEBUG Processing 294/717 atomic regions from SNP 87916 to 88516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,512 DEBUG Processing 586/660 atomic regions from SNP 175539 to 176139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,522 DEBUG Processing 339/723 atomic regions from SNP 101450 to 102050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,626 DEBUG Processing 295/717 atomic regions from SNP 88216 to 88816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,723 DEBUG Processing 587/660 atomic regions from SNP 175839 to 176439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,757 DEBUG Processing 340/723 atomic regions from SNP 101750 to 102350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,862 DEBUG Processing 296/717 atomic regions from SNP 88516 to 89116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:04,935 DEBUG Processing 588/660 atomic regions from SNP 176139 to 176739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,994 DEBUG Processing 341/723 atomic regions from SNP 102050 to 102650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,080 DEBUG Processing 297/717 atomic regions from SNP 88816 to 89416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,141 DEBUG Processing 589/660 atomic regions from SNP 176439 to 177039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,226 DEBUG Processing 342/723 atomic regions from SNP 102350 to 102950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,294 DEBUG Processing 298/717 atomic regions from SNP 89116 to 89716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,349 DEBUG Processing 590/660 atomic regions from SNP 176739 to 177339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,469 DEBUG Processing 343/723 atomic regions from SNP 102650 to 103250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,504 DEBUG Processing 299/717 atomic regions from SNP 89416 to 90016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,557 DEBUG Processing 591/660 atomic regions from SNP 177039 to 177639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,719 DEBUG Processing 344/723 atomic regions from SNP 102950 to 103550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,730 DEBUG Processing 300/717 atomic regions from SNP 89716 to 90316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:05,917 DEBUG Processing 592/660 atomic regions from SNP 177339 to 177939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,060 DEBUG Processing 301/717 atomic regions from SNP 90016 to 90616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,093 DEBUG Processing 345/723 atomic regions from SNP 103250 to 103850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,213 DEBUG Processing 593/660 atomic regions from SNP 177639 to 178239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,316 DEBUG Processing 302/717 atomic regions from SNP 90316 to 90916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,350 DEBUG Processing 346/723 atomic regions from SNP 103550 to 104150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,421 DEBUG Processing 594/660 atomic regions from SNP 177939 to 178539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,524 DEBUG Processing 303/717 atomic regions from SNP 90616 to 91216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,612 DEBUG Processing 347/723 atomic regions from SNP 103850 to 104450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,633 DEBUG Processing 595/660 atomic regions from SNP 178239 to 178839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,763 DEBUG Processing 304/717 atomic regions from SNP 90916 to 91516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,846 DEBUG Processing 348/723 atomic regions from SNP 104150 to 104750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,849 DEBUG Processing 596/660 atomic regions from SNP 178539 to 179139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,985 DEBUG Processing 305/717 atomic regions from SNP 91216 to 91816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,049 DEBUG Processing 597/660 atomic regions from SNP 178839 to 179439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,073 DEBUG Processing 349/723 atomic regions from SNP 104450 to 105050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,189 DEBUG Processing 306/717 atomic regions from SNP 91516 to 92116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,256 DEBUG Processing 598/660 atomic regions from SNP 179139 to 179739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,332 DEBUG Processing 350/723 atomic regions from SNP 104750 to 105350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,408 DEBUG Processing 307/717 atomic regions from SNP 91816 to 92416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,478 DEBUG Processing 599/660 atomic regions from SNP 179439 to 180039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,614 DEBUG Processing 351/723 atomic regions from SNP 105050 to 105650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,664 DEBUG Processing 308/717 atomic regions from SNP 92116 to 92716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,689 DEBUG Processing 600/660 atomic regions from SNP 179739 to 180339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,872 DEBUG Processing 352/723 atomic regions from SNP 105350 to 105950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,897 DEBUG Processing 309/717 atomic regions from SNP 92416 to 93016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,913 DEBUG Processing 601/660 atomic regions from SNP 180039 to 180639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,115 DEBUG Processing 310/717 atomic regions from SNP 92716 to 93316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,126 DEBUG Processing 602/660 atomic regions from SNP 180339 to 180939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,136 DEBUG Processing 353/723 atomic regions from SNP 105650 to 106250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,325 DEBUG Processing 311/717 atomic regions from SNP 93016 to 93616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,330 DEBUG Processing 603/660 atomic regions from SNP 180639 to 181239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,388 DEBUG Processing 354/723 atomic regions from SNP 105950 to 106550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,531 DEBUG Processing 604/660 atomic regions from SNP 180939 to 181539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,532 DEBUG Processing 312/717 atomic regions from SNP 93316 to 93916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,628 DEBUG Processing 355/723 atomic regions from SNP 106250 to 106850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,736 DEBUG Processing 605/660 atomic regions from SNP 181239 to 181839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,741 DEBUG Processing 313/717 atomic regions from SNP 93616 to 94216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,892 DEBUG Processing 356/723 atomic regions from SNP 106550 to 107150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,935 DEBUG Processing 606/660 atomic regions from SNP 181539 to 182139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,946 DEBUG Processing 314/717 atomic regions from SNP 93916 to 94516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,137 DEBUG Processing 607/660 atomic regions from SNP 181839 to 182439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,139 DEBUG Processing 357/723 atomic regions from SNP 106850 to 107450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,157 DEBUG Processing 315/717 atomic regions from SNP 94216 to 94816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,341 DEBUG Processing 608/660 atomic regions from SNP 182139 to 182739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,371 DEBUG Processing 316/717 atomic regions from SNP 94516 to 95116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,402 DEBUG Processing 358/723 atomic regions from SNP 107150 to 107750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,553 DEBUG Processing 609/660 atomic regions from SNP 182439 to 183039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,583 DEBUG Processing 317/717 atomic regions from SNP 94816 to 95416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,639 DEBUG Processing 359/723 atomic regions from SNP 107450 to 108050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,753 DEBUG Processing 610/660 atomic regions from SNP 182739 to 183339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,795 DEBUG Processing 318/717 atomic regions from SNP 95116 to 95716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,875 DEBUG Processing 360/723 atomic regions from SNP 107750 to 108350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,954 DEBUG Processing 611/660 atomic regions from SNP 183039 to 183639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,003 DEBUG Processing 319/717 atomic regions from SNP 95416 to 96016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,121 DEBUG Processing 361/723 atomic regions from SNP 108050 to 108650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,163 DEBUG Processing 612/660 atomic regions from SNP 183339 to 183939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,224 DEBUG Processing 320/717 atomic regions from SNP 95716 to 96316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,374 DEBUG Processing 613/660 atomic regions from SNP 183639 to 184239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,393 DEBUG Processing 362/723 atomic regions from SNP 108350 to 108950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,458 DEBUG Processing 321/717 atomic regions from SNP 96016 to 96616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,572 DEBUG Processing 614/660 atomic regions from SNP 183939 to 184539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,657 DEBUG Processing 363/723 atomic regions from SNP 108650 to 109250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,679 DEBUG Processing 322/717 atomic regions from SNP 96316 to 96916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,766 DEBUG Processing 615/660 atomic regions from SNP 184239 to 184839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,905 DEBUG Processing 323/717 atomic regions from SNP 96616 to 97216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,935 DEBUG Processing 364/723 atomic regions from SNP 108950 to 109550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,962 DEBUG Processing 616/660 atomic regions from SNP 184539 to 185139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,127 DEBUG Processing 324/717 atomic regions from SNP 96916 to 97516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,158 DEBUG Processing 617/660 atomic regions from SNP 184839 to 185439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,201 DEBUG Processing 365/723 atomic regions from SNP 109250 to 109850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,358 DEBUG Processing 618/660 atomic regions from SNP 185139 to 185739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,358 DEBUG Processing 325/717 atomic regions from SNP 97216 to 97816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,458 DEBUG Processing 366/723 atomic regions from SNP 109550 to 110150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,567 DEBUG Processing 619/660 atomic regions from SNP 185439 to 186039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,577 DEBUG Processing 326/717 atomic regions from SNP 97516 to 98116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,721 DEBUG Processing 367/723 atomic regions from SNP 109850 to 110450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,771 DEBUG Processing 620/660 atomic regions from SNP 185739 to 186339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,788 DEBUG Processing 327/717 atomic regions from SNP 97816 to 98416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,978 DEBUG Processing 621/660 atomic regions from SNP 186039 to 186639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,980 DEBUG Processing 368/723 atomic regions from SNP 110150 to 110750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,017 DEBUG Processing 328/717 atomic regions from SNP 98116 to 98716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,044 DEBUG Segmenting atomic regions: 2025-01-31 09:54:12,131 DEBUG Processing 1/677 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,181 DEBUG Processing 622/660 atomic regions from SNP 186339 to 186939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,232 DEBUG Processing 369/723 atomic regions from SNP 110450 to 111050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,262 DEBUG Processing 329/717 atomic regions from SNP 98416 to 99016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,367 DEBUG Processing 2/677 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,383 DEBUG Processing 623/660 atomic regions from SNP 186639 to 187239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,486 DEBUG Processing 370/723 atomic regions from SNP 110750 to 111350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,501 DEBUG Processing 330/717 atomic regions from SNP 98716 to 99316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,598 DEBUG Processing 624/660 atomic regions from SNP 186939 to 187539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,610 DEBUG Processing 3/677 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,745 DEBUG Processing 331/717 atomic regions from SNP 99016 to 99616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,754 DEBUG Processing 371/723 atomic regions from SNP 111050 to 111650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,801 DEBUG Processing 625/660 atomic regions from SNP 187239 to 187839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,843 DEBUG Processing 4/677 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:12,968 DEBUG Processing 332/717 atomic regions from SNP 99316 to 99916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,009 DEBUG Processing 626/660 atomic regions from SNP 187539 to 188139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,014 DEBUG Processing 372/723 atomic regions from SNP 111350 to 111950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,079 DEBUG Processing 5/677 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,190 DEBUG Processing 333/717 atomic regions from SNP 99616 to 100216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,232 DEBUG Processing 627/660 atomic regions from SNP 187839 to 188439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,283 DEBUG Processing 373/723 atomic regions from SNP 111650 to 112250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,319 DEBUG Processing 6/677 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,416 DEBUG Processing 334/717 atomic regions from SNP 99916 to 100516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,456 DEBUG Processing 628/660 atomic regions from SNP 188139 to 188739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,540 DEBUG Processing 374/723 atomic regions from SNP 111950 to 112550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,543 DEBUG Processing 7/677 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,650 DEBUG Processing 335/717 atomic regions from SNP 100216 to 100816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,663 DEBUG Processing 629/660 atomic regions from SNP 188439 to 189039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,765 DEBUG Processing 8/677 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:13,780 DEBUG Processing 375/723 atomic regions from SNP 112250 to 112850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,867 DEBUG Processing 630/660 atomic regions from SNP 188739 to 189339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,892 DEBUG Processing 336/717 atomic regions from SNP 100516 to 101116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,984 DEBUG Processing 9/677 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,010 DEBUG Processing 376/723 atomic regions from SNP 112550 to 113150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,080 DEBUG Processing 631/660 atomic regions from SNP 189039 to 189639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,138 DEBUG Processing 337/717 atomic regions from SNP 100816 to 101416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,203 DEBUG Processing 10/677 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,256 DEBUG Processing 377/723 atomic regions from SNP 112850 to 113450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,284 DEBUG Processing 632/660 atomic regions from SNP 189339 to 189939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,365 DEBUG Processing 338/717 atomic regions from SNP 101116 to 101716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,427 DEBUG Processing 11/677 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,487 DEBUG Processing 633/660 atomic regions from SNP 189639 to 190239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,507 DEBUG Processing 378/723 atomic regions from SNP 113150 to 113750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,604 DEBUG Processing 339/717 atomic regions from SNP 101416 to 102016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,649 DEBUG Processing 12/677 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,691 DEBUG Processing 634/660 atomic regions from SNP 189939 to 190539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,732 DEBUG Processing 379/723 atomic regions from SNP 113450 to 114050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,834 DEBUG Processing 340/717 atomic regions from SNP 101716 to 102316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,879 DEBUG Processing 13/677 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:14,896 DEBUG Processing 635/660 atomic regions from SNP 190239 to 190839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,969 DEBUG Processing 380/723 atomic regions from SNP 113750 to 114350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,058 DEBUG Processing 341/717 atomic regions from SNP 102016 to 102616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,098 DEBUG Processing 636/660 atomic regions from SNP 190539 to 191139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,105 DEBUG Processing 14/677 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,199 DEBUG Processing 381/723 atomic regions from SNP 114050 to 114650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,271 DEBUG Processing 342/717 atomic regions from SNP 102316 to 102916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,300 DEBUG Processing 637/660 atomic regions from SNP 190839 to 191439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,333 DEBUG Processing 15/677 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,436 DEBUG Processing 382/723 atomic regions from SNP 114350 to 114950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,480 DEBUG Processing 343/717 atomic regions from SNP 102616 to 103216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,501 DEBUG Processing 638/660 atomic regions from SNP 191139 to 191739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,561 DEBUG Processing 16/677 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,685 DEBUG Processing 383/723 atomic regions from SNP 114650 to 115250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,698 DEBUG Processing 639/660 atomic regions from SNP 191439 to 192039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,699 DEBUG Processing 344/717 atomic regions from SNP 102916 to 103516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,783 DEBUG Processing 17/677 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:15,899 DEBUG Processing 640/660 atomic regions from SNP 191739 to 192339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,905 DEBUG Processing 384/723 atomic regions from SNP 114950 to 115550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,919 DEBUG Processing 345/717 atomic regions from SNP 103216 to 103816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,003 DEBUG Processing 18/677 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,109 DEBUG Processing 641/660 atomic regions from SNP 192039 to 192639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,121 DEBUG Processing 385/723 atomic regions from SNP 115250 to 115850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,142 DEBUG Processing 346/717 atomic regions from SNP 103516 to 104116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,222 DEBUG Processing 19/677 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,337 DEBUG Processing 642/660 atomic regions from SNP 192339 to 192939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,344 DEBUG Processing 386/723 atomic regions from SNP 115550 to 116150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,352 DEBUG Processing 347/717 atomic regions from SNP 103816 to 104416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,443 DEBUG Processing 20/677 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,554 DEBUG Processing 643/660 atomic regions from SNP 192639 to 193239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,557 DEBUG Processing 348/717 atomic regions from SNP 104116 to 104716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,563 DEBUG Processing 387/723 atomic regions from SNP 115850 to 116450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,667 DEBUG Processing 21/677 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,754 DEBUG Processing 644/660 atomic regions from SNP 192939 to 193539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,761 DEBUG Processing 349/717 atomic regions from SNP 104416 to 105016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,782 DEBUG Processing 388/723 atomic regions from SNP 116150 to 116750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,889 DEBUG Processing 22/677 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:16,967 DEBUG Processing 350/717 atomic regions from SNP 104716 to 105316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,980 DEBUG Processing 645/660 atomic regions from SNP 193239 to 193839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,002 DEBUG Processing 389/723 atomic regions from SNP 116450 to 117050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,109 DEBUG Processing 23/677 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,190 DEBUG Processing 351/717 atomic regions from SNP 105016 to 105616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,199 DEBUG Processing 646/660 atomic regions from SNP 193539 to 194139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,226 DEBUG Processing 390/723 atomic regions from SNP 116750 to 117350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,327 DEBUG Processing 24/677 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,410 DEBUG Processing 352/717 atomic regions from SNP 105316 to 105916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,431 DEBUG Processing 647/660 atomic regions from SNP 193839 to 194439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,444 DEBUG Processing 391/723 atomic regions from SNP 117050 to 117650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,550 DEBUG Processing 25/677 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,622 DEBUG Processing 353/717 atomic regions from SNP 105616 to 106216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,658 DEBUG Processing 648/660 atomic regions from SNP 194139 to 194739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,664 DEBUG Processing 392/723 atomic regions from SNP 117350 to 117950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,766 DEBUG Processing 26/677 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:17,838 DEBUG Processing 354/717 atomic regions from SNP 105916 to 106516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,864 DEBUG Processing 649/660 atomic regions from SNP 194439 to 195039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,886 DEBUG Processing 393/723 atomic regions from SNP 117650 to 118250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,979 DEBUG Processing 27/677 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,046 DEBUG Processing 355/717 atomic regions from SNP 106216 to 106816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,066 DEBUG Processing 650/660 atomic regions from SNP 194739 to 195339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,109 DEBUG Processing 394/723 atomic regions from SNP 117950 to 118550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,191 DEBUG Processing 28/677 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,255 DEBUG Processing 356/717 atomic regions from SNP 106516 to 107116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,269 DEBUG Processing 651/660 atomic regions from SNP 195039 to 195639 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,331 DEBUG Processing 395/723 atomic regions from SNP 118250 to 118850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,403 DEBUG Processing 29/677 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,461 DEBUG Processing 357/717 atomic regions from SNP 106816 to 107416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,489 DEBUG Processing 652/660 atomic regions from SNP 195339 to 195939 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,555 DEBUG Processing 396/723 atomic regions from SNP 118550 to 119150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,616 DEBUG Processing 30/677 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,666 DEBUG Processing 358/717 atomic regions from SNP 107116 to 107716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,689 DEBUG Processing 653/660 atomic regions from SNP 195639 to 196239 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,780 DEBUG Processing 397/723 atomic regions from SNP 118850 to 119450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,833 DEBUG Processing 31/677 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:18,867 DEBUG Processing 359/717 atomic regions from SNP 107416 to 108016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,886 DEBUG Processing 654/660 atomic regions from SNP 195939 to 196539 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,006 DEBUG Processing 398/723 atomic regions from SNP 119150 to 119750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,050 DEBUG Processing 32/677 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,066 DEBUG Processing 360/717 atomic regions from SNP 107716 to 108316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,080 DEBUG Processing 655/660 atomic regions from SNP 196239 to 196839 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,232 DEBUG Processing 399/723 atomic regions from SNP 119450 to 120050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,272 DEBUG Processing 361/717 atomic regions from SNP 108016 to 108616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,280 DEBUG Processing 656/660 atomic regions from SNP 196539 to 197139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,284 DEBUG Processing 33/677 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,460 DEBUG Processing 400/723 atomic regions from SNP 119750 to 120350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,476 DEBUG Processing 362/717 atomic regions from SNP 108316 to 108916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,480 DEBUG Processing 657/660 atomic regions from SNP 196839 to 197439 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,533 DEBUG Processing 34/677 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,683 DEBUG Processing 658/660 atomic regions from SNP 197139 to 197739 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,685 DEBUG Processing 363/717 atomic regions from SNP 108616 to 109216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,688 DEBUG Processing 401/723 atomic regions from SNP 120050 to 120650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,780 DEBUG Processing 35/677 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:19,896 DEBUG Processing 659/660 atomic regions from SNP 197439 to 198039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,897 DEBUG Processing 364/717 atomic regions from SNP 108916 to 109516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,915 DEBUG Processing 402/723 atomic regions from SNP 120350 to 120950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,996 DEBUG Processing 36/677 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,104 DEBUG Processing 660/660 atomic regions from SNP 197739 to 198339 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,108 DEBUG Processing 365/717 atomic regions from SNP 109216 to 109816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,141 DEBUG Processing 403/723 atomic regions from SNP 120650 to 121250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,214 DEBUG Processing 37/677 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,224 DEBUG Unique SNPs positions in subchromosome 2: 198340 2025-01-31 09:54:20,315 DEBUG Processing 366/717 atomic regions from SNP 109516 to 110116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,363 DEBUG Processing 404/723 atomic regions from SNP 120950 to 121550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,432 DEBUG Processing 38/677 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,516 DEBUG Processing 367/717 atomic regions from SNP 109816 to 110416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,592 DEBUG Processing 405/723 atomic regions from SNP 121250 to 121850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,649 DEBUG Processing 39/677 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,717 DEBUG Processing 368/717 atomic regions from SNP 110116 to 110716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,820 DEBUG Processing 406/723 atomic regions from SNP 121550 to 122150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,864 DEBUG Processing 40/677 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:20,920 DEBUG Processing 369/717 atomic regions from SNP 110416 to 111016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,051 DEBUG Processing 407/723 atomic regions from SNP 121850 to 122450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,081 DEBUG Processing 41/677 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,128 DEBUG Processing 370/717 atomic regions from SNP 110716 to 111316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,269 DEBUG Processing 408/723 atomic regions from SNP 122150 to 122750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,295 DEBUG Processing 42/677 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,332 DEBUG Processing 371/717 atomic regions from SNP 111016 to 111616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,487 DEBUG Processing 409/723 atomic regions from SNP 122450 to 123050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,510 DEBUG Processing 43/677 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,538 DEBUG Processing 372/717 atomic regions from SNP 111316 to 111916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,703 DEBUG Processing 410/723 atomic regions from SNP 122750 to 123350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,723 DEBUG Processing 44/677 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,737 DEBUG Processing 373/717 atomic regions from SNP 111616 to 112216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,934 DEBUG Processing 45/677 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:21,935 DEBUG Processing 374/717 atomic regions from SNP 111916 to 112516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,942 DEBUG Processing 411/723 atomic regions from SNP 123050 to 123650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,136 DEBUG Processing 375/717 atomic regions from SNP 112216 to 112816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,147 DEBUG Processing 46/677 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,172 DEBUG Processing 412/723 atomic regions from SNP 123350 to 123950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,339 DEBUG Processing 376/717 atomic regions from SNP 112516 to 113116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,363 DEBUG Processing 47/677 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,392 DEBUG Processing 413/723 atomic regions from SNP 123650 to 124250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,541 DEBUG Processing 377/717 atomic regions from SNP 112816 to 113416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,581 DEBUG Processing 48/677 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,629 DEBUG Processing 414/723 atomic regions from SNP 123950 to 124550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,751 DEBUG Processing 378/717 atomic regions from SNP 113116 to 113716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,794 DEBUG Processing 49/677 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:22,860 DEBUG Processing 415/723 atomic regions from SNP 124250 to 124850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,960 DEBUG Processing 379/717 atomic regions from SNP 113416 to 114016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,009 DEBUG Processing 50/677 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,094 DEBUG Processing 416/723 atomic regions from SNP 124550 to 125150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,164 DEBUG Processing 380/717 atomic regions from SNP 113716 to 114316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,227 DEBUG Processing 51/677 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,335 DEBUG Processing 417/723 atomic regions from SNP 124850 to 125450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,368 DEBUG Processing 381/717 atomic regions from SNP 114016 to 114616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,444 DEBUG Processing 52/677 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,566 DEBUG Processing 382/717 atomic regions from SNP 114316 to 114916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,579 DEBUG Processing 418/723 atomic regions from SNP 125150 to 125750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,659 DEBUG Processing 53/677 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,763 DEBUG Processing 383/717 atomic regions from SNP 114616 to 115216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,798 DEBUG Processing 419/723 atomic regions from SNP 125450 to 126050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,883 DEBUG Processing 54/677 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:23,963 DEBUG Processing 384/717 atomic regions from SNP 114916 to 115516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,030 DEBUG Processing 420/723 atomic regions from SNP 125750 to 126350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,105 DEBUG Processing 55/677 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,168 DEBUG Processing 385/717 atomic regions from SNP 115216 to 115816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,251 DEBUG Processing 421/723 atomic regions from SNP 126050 to 126650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,323 DEBUG Processing 56/677 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,372 DEBUG Processing 386/717 atomic regions from SNP 115516 to 116116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,470 DEBUG Processing 422/723 atomic regions from SNP 126350 to 126950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,540 DEBUG Processing 57/677 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,579 DEBUG Processing 387/717 atomic regions from SNP 115816 to 116416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,688 DEBUG Processing 423/723 atomic regions from SNP 126650 to 127250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,750 DEBUG Processing 58/677 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:24,795 DEBUG Processing 388/717 atomic regions from SNP 116116 to 116716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,905 DEBUG Processing 424/723 atomic regions from SNP 126950 to 127550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,959 DEBUG Processing 59/677 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,005 DEBUG Processing 389/717 atomic regions from SNP 116416 to 117016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,121 DEBUG Processing 425/723 atomic regions from SNP 127250 to 127850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,168 DEBUG Processing 60/677 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,224 DEBUG Processing 390/717 atomic regions from SNP 116716 to 117316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,330 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:25,337 DEBUG Processing 426/723 atomic regions from SNP 127550 to 128150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,389 DEBUG Processing 61/677 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,454 DEBUG Processing 391/717 atomic regions from SNP 117016 to 117616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,556 DEBUG Processing 427/723 atomic regions from SNP 127850 to 128450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,603 DEBUG Processing 62/677 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,681 DEBUG Processing 392/717 atomic regions from SNP 117316 to 117916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,779 DEBUG Processing 428/723 atomic regions from SNP 128150 to 128750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,822 DEBUG Processing 63/677 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:25,910 DEBUG Processing 393/717 atomic regions from SNP 117616 to 118216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,992 DEBUG Processing 429/723 atomic regions from SNP 128450 to 129050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,035 DEBUG Processing 64/677 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,114 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:54:26,145 DEBUG Processing 394/717 atomic regions from SNP 117916 to 118516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,206 DEBUG Processing 430/723 atomic regions from SNP 128750 to 129350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,246 DEBUG Processing 65/677 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,393 DEBUG Processing 395/717 atomic regions from SNP 118216 to 118816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,425 DEBUG Processing 431/723 atomic regions from SNP 129050 to 129650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,460 DEBUG Processing 66/677 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,633 DEBUG Processing 396/717 atomic regions from SNP 118516 to 119116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,650 DEBUG Processing 432/723 atomic regions from SNP 129350 to 129950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,676 DEBUG Processing 67/677 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:26,874 DEBUG Processing 397/717 atomic regions from SNP 118816 to 119416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,879 DEBUG Processing 433/723 atomic regions from SNP 129650 to 130250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,892 DEBUG Processing 68/677 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,105 DEBUG Processing 398/717 atomic regions from SNP 119116 to 119716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,109 DEBUG Processing 69/677 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,130 DEBUG Processing 434/723 atomic regions from SNP 129950 to 130550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,321 DEBUG Processing 70/677 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,330 DEBUG Processing 399/717 atomic regions from SNP 119416 to 120016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,371 DEBUG Processing 435/723 atomic regions from SNP 130250 to 130850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,529 DEBUG Processing 71/677 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,547 DEBUG Processing 400/717 atomic regions from SNP 119716 to 120316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,589 DEBUG Processing 436/723 atomic regions from SNP 130550 to 131150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,736 DEBUG Processing 72/677 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:27,781 DEBUG Processing 401/717 atomic regions from SNP 120016 to 120616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,806 DEBUG Processing 437/723 atomic regions from SNP 130850 to 131450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,943 DEBUG Processing 73/677 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,021 DEBUG Processing 402/717 atomic regions from SNP 120316 to 120916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,024 DEBUG Processing 438/723 atomic regions from SNP 131150 to 131750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,146 DEBUG Processing 74/677 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,225 DEBUG Processing 403/717 atomic regions from SNP 120616 to 121216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,236 DEBUG Processing 439/723 atomic regions from SNP 131450 to 132050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,358 DEBUG Processing 75/677 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,430 DEBUG Processing 404/717 atomic regions from SNP 120916 to 121516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,456 DEBUG Processing 440/723 atomic regions from SNP 131750 to 132350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,572 DEBUG Processing 76/677 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,632 DEBUG Processing 405/717 atomic regions from SNP 121216 to 121816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,677 DEBUG Processing 441/723 atomic regions from SNP 132050 to 132650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,790 DEBUG Processing 77/677 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:28,833 DEBUG Processing 406/717 atomic regions from SNP 121516 to 122116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,894 DEBUG Processing 442/723 atomic regions from SNP 132350 to 132950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,007 DEBUG Processing 78/677 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,031 DEBUG Processing 407/717 atomic regions from SNP 121816 to 122416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,109 DEBUG Processing 443/723 atomic regions from SNP 132650 to 133250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,225 DEBUG Processing 79/677 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,233 DEBUG Processing 408/717 atomic regions from SNP 122116 to 122716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,325 DEBUG Processing 444/723 atomic regions from SNP 132950 to 133550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,443 DEBUG Processing 409/717 atomic regions from SNP 122416 to 123016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,447 DEBUG Processing 80/677 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,548 DEBUG Processing 445/723 atomic regions from SNP 133250 to 133850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,669 DEBUG Processing 410/717 atomic regions from SNP 122716 to 123316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,671 DEBUG Processing 81/677 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,759 DEBUG Processing 446/723 atomic regions from SNP 133550 to 134150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,875 DEBUG Processing 411/717 atomic regions from SNP 123016 to 123616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,882 DEBUG Processing 82/677 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,975 DEBUG Processing 447/723 atomic regions from SNP 133850 to 134450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,094 DEBUG Processing 83/677 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,102 DEBUG Processing 412/717 atomic regions from SNP 123316 to 123916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,194 DEBUG Processing 448/723 atomic regions from SNP 134150 to 134750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,303 DEBUG Processing 84/677 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,324 DEBUG Processing 413/717 atomic regions from SNP 123616 to 124216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,423 DEBUG Processing 449/723 atomic regions from SNP 134450 to 135050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,509 DEBUG Processing 85/677 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,530 DEBUG Processing 414/717 atomic regions from SNP 123916 to 124516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,661 DEBUG Processing 450/723 atomic regions from SNP 134750 to 135350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,716 DEBUG Processing 86/677 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,737 DEBUG Processing 415/717 atomic regions from SNP 124216 to 124816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,903 DEBUG Processing 451/723 atomic regions from SNP 135050 to 135650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,928 DEBUG Processing 87/677 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,967 DEBUG Processing 416/717 atomic regions from SNP 124516 to 125116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,137 DEBUG Processing 452/723 atomic regions from SNP 135350 to 135950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,138 DEBUG Processing 88/677 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,184 DEBUG Processing 417/717 atomic regions from SNP 124816 to 125416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,353 DEBUG Processing 89/677 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,379 DEBUG Processing 453/723 atomic regions from SNP 135650 to 136250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,381 DEBUG Processing 418/717 atomic regions from SNP 125116 to 125716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,570 DEBUG Processing 90/677 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,578 DEBUG Processing 419/717 atomic regions from SNP 125416 to 126016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,598 DEBUG Processing 454/723 atomic regions from SNP 135950 to 136550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,777 DEBUG Processing 420/717 atomic regions from SNP 125716 to 126316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,790 DEBUG Processing 91/677 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,824 DEBUG Processing 455/723 atomic regions from SNP 136250 to 136850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,970 DEBUG Processing 421/717 atomic regions from SNP 126016 to 126616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,005 DEBUG Processing 92/677 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,045 DEBUG Processing 456/723 atomic regions from SNP 136550 to 137150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,165 DEBUG Processing 422/717 atomic regions from SNP 126316 to 126916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,214 DEBUG Processing 93/677 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,263 DEBUG Processing 457/723 atomic regions from SNP 136850 to 137450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,365 DEBUG Processing 423/717 atomic regions from SNP 126616 to 127216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,425 DEBUG Processing 94/677 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,485 DEBUG Processing 458/723 atomic regions from SNP 137150 to 137750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,562 DEBUG Processing 424/717 atomic regions from SNP 126916 to 127516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,631 DEBUG Processing 95/677 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,698 DEBUG Processing 459/723 atomic regions from SNP 137450 to 138050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,758 DEBUG Subchromosome time: 188.00826533290092, subchromosome SNPs: 198340 2025-01-31 09:54:32,759 DEBUG Estimated BADs: [0.41, 2.03, 8.10, 2.03, 6.08, 2.03, 0.51, 2.03, 0.68, 4.05, 0.68, 8.10, 2.03, 12.15, 4.05, 1.01, 4.05, 0.34, 2.03, 0.41, 2.03, 1.01, 0.41, 2.03, 6.08, 2.03] SNP counts: [148, 21184, 5669, 12481, 10003, 3381, 5605, 1204, 1470, 8736, 1917, 2871, 2076, 2463, 28174, 2389, 13213, 9883, 2706, 18004, 8707, 4482, 14472, 11113, 1769, 4368] SNP IDs counts: [148, 21184, 5669, 12481, 10003, 3381, 5605, 1204, 1470, 8736, 1917, 2871, 2076, 2463, 28174, 2389, 13213, 9883, 2706, 18004, 8707, 4482, 14472, 11113, 1769, 4368] Critical gap: 624185bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.01Mbp], 5.13Mbp[0.71Mbp], 19.74Mbp, 22.72Mbp, 29.89Mbp, 35.19Mbp, 37.14Mbp, 40.52Mbp, 41.22Mbp, 44.81Mbp, 49.53Mbp, 50.77Mbp, 52.48Mbp, 54.35Mbp, 55.66Mbp, 71.28Mbp, 72.66Mbp, 79.89Mbp, 86.13Mbp, 87.62Mbp, 98.70Mbp, 103.56Mbp, 106.12Mbp, 115.04Mbp, 121.24Mbp, 122.16Mbp, 124.90Mbp] 2025-01-31 09:54:32,759 DEBUG chr14 time: 188.0088234889554 s 2025-01-31 09:54:32,767 DEBUG Processing 425/717 atomic regions from SNP 127216 to 127816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,830 DEBUG Processing 96/677 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,872 DEBUG chr14: Fitting background model for 26 segments 2025-01-31 09:54:32,912 DEBUG Processing 460/723 atomic regions from SNP 137750 to 138350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,995 DEBUG Processing 426/717 atomic regions from SNP 127516 to 128116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,033 DEBUG Processing 97/677 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,129 DEBUG Processing 461/723 atomic regions from SNP 138050 to 138650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,200 DEBUG Processing 427/717 atomic regions from SNP 127816 to 128416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,239 DEBUG Processing 98/677 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,349 DEBUG Processing 462/723 atomic regions from SNP 138350 to 138950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,421 DEBUG Processing 428/717 atomic regions from SNP 128116 to 128716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,450 DEBUG Processing 99/677 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,568 DEBUG Processing 463/723 atomic regions from SNP 138650 to 139250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,648 DEBUG Processing 429/717 atomic regions from SNP 128416 to 129016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,664 DEBUG Processing 100/677 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,789 DEBUG Processing 464/723 atomic regions from SNP 138950 to 139550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,884 DEBUG Processing 101/677 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,887 DEBUG Processing 430/717 atomic regions from SNP 128716 to 129316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,009 DEBUG Processing 465/723 atomic regions from SNP 139250 to 139850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,125 DEBUG Processing 431/717 atomic regions from SNP 129016 to 129616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,129 DEBUG Processing 102/677 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,222 DEBUG Processing 466/723 atomic regions from SNP 139550 to 140150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,348 DEBUG Processing 432/717 atomic regions from SNP 129316 to 129916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,373 DEBUG Processing 103/677 atomic regions from SNP 30702 to 31302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,432 DEBUG Processing 467/723 atomic regions from SNP 139850 to 140450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,573 DEBUG Processing 433/717 atomic regions from SNP 129616 to 130216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,584 DEBUG Processing 104/677 atomic regions from SNP 31002 to 31602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,641 DEBUG Processing 468/723 atomic regions from SNP 140150 to 140750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,780 DEBUG Processing 434/717 atomic regions from SNP 129916 to 130516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,803 DEBUG Processing 105/677 atomic regions from SNP 31302 to 31902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,851 DEBUG Processing 469/723 atomic regions from SNP 140450 to 141050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,998 DEBUG Processing 435/717 atomic regions from SNP 130216 to 130816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,046 DEBUG Processing 106/677 atomic regions from SNP 31602 to 32202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,063 DEBUG Processing 470/723 atomic regions from SNP 140750 to 141350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,222 DEBUG Processing 436/717 atomic regions from SNP 130516 to 131116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,280 DEBUG Processing 471/723 atomic regions from SNP 141050 to 141650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,293 DEBUG Processing 107/677 atomic regions from SNP 31902 to 32502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,435 DEBUG Processing 437/717 atomic regions from SNP 130816 to 131416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,502 DEBUG Processing 472/723 atomic regions from SNP 141350 to 141950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,531 DEBUG Processing 108/677 atomic regions from SNP 32202 to 32802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,640 DEBUG Processing 438/717 atomic regions from SNP 131116 to 131716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,723 DEBUG Processing 473/723 atomic regions from SNP 141650 to 142250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,750 DEBUG Processing 109/677 atomic regions from SNP 32502 to 33102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,846 DEBUG Processing 439/717 atomic regions from SNP 131416 to 132016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,945 DEBUG Processing 474/723 atomic regions from SNP 141950 to 142550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,974 DEBUG Processing 110/677 atomic regions from SNP 32802 to 33402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,052 DEBUG Processing 440/717 atomic regions from SNP 131716 to 132316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,162 DEBUG Processing 475/723 atomic regions from SNP 142250 to 142850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,196 DEBUG Processing 111/677 atomic regions from SNP 33102 to 33702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,257 DEBUG Processing 441/717 atomic regions from SNP 132016 to 132616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,376 DEBUG Processing 476/723 atomic regions from SNP 142550 to 143150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,417 DEBUG Processing 112/677 atomic regions from SNP 33402 to 34002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,478 DEBUG Processing 442/717 atomic regions from SNP 132316 to 132916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,589 DEBUG Processing 477/723 atomic regions from SNP 142850 to 143450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,643 DEBUG Processing 113/677 atomic regions from SNP 33702 to 34302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,712 DEBUG Processing 443/717 atomic regions from SNP 132616 to 133216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,798 DEBUG Processing 478/723 atomic regions from SNP 143150 to 143750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,885 DEBUG Processing 114/677 atomic regions from SNP 34002 to 34602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,933 DEBUG Processing 444/717 atomic regions from SNP 132916 to 133516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,007 DEBUG Processing 479/723 atomic regions from SNP 143450 to 144050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,127 DEBUG Processing 115/677 atomic regions from SNP 34302 to 34902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,160 DEBUG Processing 445/717 atomic regions from SNP 133216 to 133816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,220 DEBUG Processing 480/723 atomic regions from SNP 143750 to 144350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,374 DEBUG Processing 116/677 atomic regions from SNP 34602 to 35202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,398 DEBUG Processing 446/717 atomic regions from SNP 133516 to 134116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,437 DEBUG Processing 481/723 atomic regions from SNP 144050 to 144650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,600 DEBUG Processing 117/677 atomic regions from SNP 34902 to 35502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,637 DEBUG Processing 447/717 atomic regions from SNP 133816 to 134416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,657 DEBUG Processing 482/723 atomic regions from SNP 144350 to 144950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,810 DEBUG Processing 118/677 atomic regions from SNP 35202 to 35802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,870 DEBUG Processing 448/717 atomic regions from SNP 134116 to 134716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,877 DEBUG Processing 483/723 atomic regions from SNP 144650 to 145250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,032 DEBUG Processing 119/677 atomic regions from SNP 35502 to 36102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,101 DEBUG Processing 484/723 atomic regions from SNP 144950 to 145550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,116 DEBUG Processing 449/717 atomic regions from SNP 134416 to 135016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,252 DEBUG Processing 120/677 atomic regions from SNP 35802 to 36402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,267 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:54:38,268 DEBUG chr12: Signal quantile: 0.993. signal threshold: 16. Best RMSEA: 0.021 2025-01-31 09:54:38,324 DEBUG Processing 485/723 atomic regions from SNP 145250 to 145850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,342 DEBUG Processing 450/717 atomic regions from SNP 134716 to 135316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,493 DEBUG Processing 121/677 atomic regions from SNP 36102 to 36702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,547 DEBUG Processing 486/723 atomic regions from SNP 145550 to 146150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,554 DEBUG Processing 451/717 atomic regions from SNP 135016 to 135616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,738 DEBUG Processing 122/677 atomic regions from SNP 36402 to 37002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,773 DEBUG Processing 487/723 atomic regions from SNP 145850 to 146450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,774 DEBUG Processing 452/717 atomic regions from SNP 135316 to 135916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,986 DEBUG Processing 123/677 atomic regions from SNP 36702 to 37302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,003 DEBUG Processing 488/723 atomic regions from SNP 146150 to 146750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,011 DEBUG Processing 453/717 atomic regions from SNP 135616 to 136216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,217 DEBUG Processing 454/717 atomic regions from SNP 135916 to 136516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,219 DEBUG Processing 124/677 atomic regions from SNP 37002 to 37602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,224 DEBUG Processing 489/723 atomic regions from SNP 146450 to 147050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,427 DEBUG Processing 455/717 atomic regions from SNP 136216 to 136816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,441 DEBUG Processing 125/677 atomic regions from SNP 37302 to 37902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,450 DEBUG Processing 490/723 atomic regions from SNP 146750 to 147350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,658 DEBUG Processing 456/717 atomic regions from SNP 136516 to 137116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,670 DEBUG Processing 126/677 atomic regions from SNP 37602 to 38202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,679 DEBUG Processing 491/723 atomic regions from SNP 147050 to 147650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,899 DEBUG Processing 457/717 atomic regions from SNP 136816 to 137416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,903 DEBUG Processing 127/677 atomic regions from SNP 37902 to 38502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,916 DEBUG Processing 492/723 atomic regions from SNP 147350 to 147950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,131 DEBUG Processing 128/677 atomic regions from SNP 38202 to 38802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,137 DEBUG Processing 458/717 atomic regions from SNP 137116 to 137716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,147 DEBUG Processing 493/723 atomic regions from SNP 147650 to 148250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,360 DEBUG Processing 129/677 atomic regions from SNP 38502 to 39102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,367 DEBUG chr12 total SNP count: 198562 2025-01-31 09:54:40,368 DEBUG chr12 length: 120129022 2025-01-31 09:54:40,368 DEBUG ----------------------------------------- 2025-01-31 09:54:40,368 INFO Processing SNPs in chr12 2025-01-31 09:54:40,389 DEBUG Processing 494/723 atomic regions from SNP 147950 to 148550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,396 DEBUG Processing 459/717 atomic regions from SNP 137416 to 138016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,570 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 198562)] 2025-01-31 09:54:40,600 DEBUG Processing 130/677 atomic regions from SNP 38802 to 39402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,637 DEBUG Processing 495/723 atomic regions from SNP 148250 to 148850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,645 DEBUG Processing 460/717 atomic regions from SNP 137716 to 138316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,660 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:54:40,661 DEBUG chr15: Signal quantile: 0.991. signal threshold: 21. Best RMSEA: 0.013 2025-01-31 09:54:40,708 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:40,844 DEBUG Processing 131/677 atomic regions from SNP 39102 to 39702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,886 DEBUG Processing 496/723 atomic regions from SNP 148550 to 149150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,893 DEBUG Processing 461/717 atomic regions from SNP 138016 to 138616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,087 DEBUG Processing 132/677 atomic regions from SNP 39402 to 40002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,127 DEBUG Processing 497/723 atomic regions from SNP 148850 to 149450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,130 DEBUG Processing 462/717 atomic regions from SNP 138316 to 138916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,332 DEBUG Processing 133/677 atomic regions from SNP 39702 to 40302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,359 DEBUG Processing 463/717 atomic regions from SNP 138616 to 139216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,373 DEBUG Processing 498/723 atomic regions from SNP 149150 to 149750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,565 DEBUG Processing 134/677 atomic regions from SNP 40002 to 40602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,578 DEBUG Processing 464/717 atomic regions from SNP 138916 to 139516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,606 DEBUG Processing 499/723 atomic regions from SNP 149450 to 150050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,794 DEBUG Processing 465/717 atomic regions from SNP 139216 to 139816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,797 DEBUG Processing 135/677 atomic regions from SNP 40302 to 40902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,841 DEBUG Processing 500/723 atomic regions from SNP 149750 to 150350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,009 DEBUG Processing 466/717 atomic regions from SNP 139516 to 140116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,024 DEBUG Processing 136/677 atomic regions from SNP 40602 to 41202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,074 DEBUG Processing 501/723 atomic regions from SNP 150050 to 150650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,220 DEBUG Processing 467/717 atomic regions from SNP 139816 to 140416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,245 DEBUG Processing 137/677 atomic regions from SNP 40902 to 41502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,300 DEBUG Processing 502/723 atomic regions from SNP 150350 to 150950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,430 DEBUG Processing 468/717 atomic regions from SNP 140116 to 140716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,460 DEBUG Processing 138/677 atomic regions from SNP 41202 to 41802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,520 DEBUG Processing 503/723 atomic regions from SNP 150650 to 151250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,634 DEBUG Processing 469/717 atomic regions from SNP 140416 to 141016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,675 DEBUG Processing 139/677 atomic regions from SNP 41502 to 42102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,736 DEBUG chr15 total SNP count: 179231 2025-01-31 09:54:42,736 DEBUG chr15 length: 104043685 2025-01-31 09:54:42,736 DEBUG ----------------------------------------- 2025-01-31 09:54:42,736 INFO Processing SNPs in chr15 2025-01-31 09:54:42,745 DEBUG Processing 504/723 atomic regions from SNP 150950 to 151550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,845 DEBUG Processing 470/717 atomic regions from SNP 140716 to 141316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,883 DEBUG Processing 140/677 atomic regions from SNP 41802 to 42402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,918 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 179231)] 2025-01-31 09:54:42,964 DEBUG Processing 505/723 atomic regions from SNP 151250 to 151850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,041 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:43,056 DEBUG Processing 471/717 atomic regions from SNP 141016 to 141616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,092 DEBUG Processing 141/677 atomic regions from SNP 42102 to 42702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,186 DEBUG Processing 506/723 atomic regions from SNP 151550 to 152150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,269 DEBUG Processing 472/717 atomic regions from SNP 141316 to 141916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,302 DEBUG Processing 142/677 atomic regions from SNP 42402 to 43002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,408 DEBUG Processing 507/723 atomic regions from SNP 151850 to 152450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,487 DEBUG Processing 473/717 atomic regions from SNP 141616 to 142216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,519 DEBUG Processing 143/677 atomic regions from SNP 42702 to 43302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,625 DEBUG Processing 508/723 atomic regions from SNP 152150 to 152750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,699 DEBUG Processing 474/717 atomic regions from SNP 141916 to 142516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,734 DEBUG Processing 144/677 atomic regions from SNP 43002 to 43602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,847 DEBUG Processing 509/723 atomic regions from SNP 152450 to 153050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,916 DEBUG Processing 475/717 atomic regions from SNP 142216 to 142816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,951 DEBUG Processing 145/677 atomic regions from SNP 43302 to 43902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,068 DEBUG Processing 510/723 atomic regions from SNP 152750 to 153350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,158 DEBUG Processing 476/717 atomic regions from SNP 142516 to 143116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,172 DEBUG Processing 146/677 atomic regions from SNP 43602 to 44202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,324 DEBUG Processing 511/723 atomic regions from SNP 153050 to 153650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,402 DEBUG Processing 477/717 atomic regions from SNP 142816 to 143416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,403 DEBUG Processing 147/677 atomic regions from SNP 43902 to 44502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,554 DEBUG Processing 512/723 atomic regions from SNP 153350 to 153950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,622 DEBUG Processing 478/717 atomic regions from SNP 143116 to 143716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,629 DEBUG Processing 148/677 atomic regions from SNP 44202 to 44802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,781 DEBUG Processing 513/723 atomic regions from SNP 153650 to 154250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,852 DEBUG Processing 479/717 atomic regions from SNP 143416 to 144016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,853 DEBUG Processing 149/677 atomic regions from SNP 44502 to 45102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,012 DEBUG Processing 514/723 atomic regions from SNP 153950 to 154550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,082 DEBUG Processing 150/677 atomic regions from SNP 44802 to 45402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,083 DEBUG Processing 480/717 atomic regions from SNP 143716 to 144316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,240 DEBUG Processing 515/723 atomic regions from SNP 154250 to 154850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,312 DEBUG Processing 481/717 atomic regions from SNP 144016 to 144616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,314 DEBUG Processing 151/677 atomic regions from SNP 45102 to 45702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,469 DEBUG Processing 516/723 atomic regions from SNP 154550 to 155150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,537 DEBUG Processing 482/717 atomic regions from SNP 144316 to 144916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,559 DEBUG Processing 152/677 atomic regions from SNP 45402 to 46002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,698 DEBUG Processing 517/723 atomic regions from SNP 154850 to 155450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,759 DEBUG Processing 483/717 atomic regions from SNP 144616 to 145216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,808 DEBUG Processing 153/677 atomic regions from SNP 45702 to 46302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,937 DEBUG Processing 518/723 atomic regions from SNP 155150 to 155750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,989 DEBUG Processing 484/717 atomic regions from SNP 144916 to 145516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,035 DEBUG Processing 154/677 atomic regions from SNP 46002 to 46602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,163 DEBUG Processing 519/723 atomic regions from SNP 155450 to 156050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,212 DEBUG Processing 485/717 atomic regions from SNP 145216 to 145816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,264 DEBUG Processing 155/677 atomic regions from SNP 46302 to 46902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,389 DEBUG Processing 520/723 atomic regions from SNP 155750 to 156350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,442 DEBUG Processing 486/717 atomic regions from SNP 145516 to 146116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,495 DEBUG Processing 156/677 atomic regions from SNP 46602 to 47202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,608 DEBUG Processing 521/723 atomic regions from SNP 156050 to 156650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,680 DEBUG Processing 487/717 atomic regions from SNP 145816 to 146416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,719 DEBUG Processing 157/677 atomic regions from SNP 46902 to 47502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,829 DEBUG Processing 522/723 atomic regions from SNP 156350 to 156950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,939 DEBUG Processing 488/717 atomic regions from SNP 146116 to 146716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,949 DEBUG Processing 158/677 atomic regions from SNP 47202 to 47802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,052 DEBUG Processing 523/723 atomic regions from SNP 156650 to 157250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,184 DEBUG Processing 159/677 atomic regions from SNP 47502 to 48102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,194 DEBUG Processing 489/717 atomic regions from SNP 146416 to 147016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,277 DEBUG Processing 524/723 atomic regions from SNP 156950 to 157550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,415 DEBUG Processing 160/677 atomic regions from SNP 47802 to 48402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,423 DEBUG Processing 490/717 atomic regions from SNP 146716 to 147316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,509 DEBUG Processing 525/723 atomic regions from SNP 157250 to 157850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,641 DEBUG Processing 161/677 atomic regions from SNP 48102 to 48702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,668 DEBUG Processing 491/717 atomic regions from SNP 147016 to 147616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,740 DEBUG Processing 526/723 atomic regions from SNP 157550 to 158150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,868 DEBUG Processing 162/677 atomic regions from SNP 48402 to 49002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,912 DEBUG Processing 492/717 atomic regions from SNP 147316 to 147916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,975 DEBUG Processing 527/723 atomic regions from SNP 157850 to 158450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,093 DEBUG Processing 163/677 atomic regions from SNP 48702 to 49302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,134 DEBUG Processing 493/717 atomic regions from SNP 147616 to 148216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,200 DEBUG Processing 528/723 atomic regions from SNP 158150 to 158750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,315 DEBUG Processing 164/677 atomic regions from SNP 49002 to 49602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,367 DEBUG Processing 494/717 atomic regions from SNP 147916 to 148516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,426 DEBUG Processing 529/723 atomic regions from SNP 158450 to 159050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,534 DEBUG Processing 165/677 atomic regions from SNP 49302 to 49902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,614 DEBUG Processing 495/717 atomic regions from SNP 148216 to 148816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,651 DEBUG Processing 530/723 atomic regions from SNP 158750 to 159350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,764 DEBUG Processing 166/677 atomic regions from SNP 49602 to 50202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,834 DEBUG Processing 496/717 atomic regions from SNP 148516 to 149116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,877 DEBUG Processing 531/723 atomic regions from SNP 159050 to 159650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,983 DEBUG Processing 167/677 atomic regions from SNP 49902 to 50502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,057 DEBUG Processing 497/717 atomic regions from SNP 148816 to 149416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,104 DEBUG Processing 532/723 atomic regions from SNP 159350 to 159950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,205 DEBUG Processing 168/677 atomic regions from SNP 50202 to 50802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,272 DEBUG Processing 498/717 atomic regions from SNP 149116 to 149716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,332 DEBUG Processing 533/723 atomic regions from SNP 159650 to 160250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,426 DEBUG Processing 169/677 atomic regions from SNP 50502 to 51102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,496 DEBUG Processing 499/717 atomic regions from SNP 149416 to 150016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,557 DEBUG Processing 534/723 atomic regions from SNP 159950 to 160550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,658 DEBUG Processing 170/677 atomic regions from SNP 50802 to 51402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,718 DEBUG Processing 500/717 atomic regions from SNP 149716 to 150316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,787 DEBUG Processing 535/723 atomic regions from SNP 160250 to 160850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,895 DEBUG Processing 171/677 atomic regions from SNP 51102 to 51702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,935 DEBUG Processing 501/717 atomic regions from SNP 150016 to 150616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,017 DEBUG Processing 536/723 atomic regions from SNP 160550 to 161150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,116 DEBUG Processing 172/677 atomic regions from SNP 51402 to 52002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,161 DEBUG Processing 502/717 atomic regions from SNP 150316 to 150916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,245 DEBUG Processing 537/723 atomic regions from SNP 160850 to 161450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,338 DEBUG Processing 173/677 atomic regions from SNP 51702 to 52302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,388 DEBUG Processing 503/717 atomic regions from SNP 150616 to 151216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,474 DEBUG Processing 538/723 atomic regions from SNP 161150 to 161750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,565 DEBUG Processing 174/677 atomic regions from SNP 52002 to 52602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,611 DEBUG Processing 504/717 atomic regions from SNP 150916 to 151516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,696 DEBUG Processing 539/723 atomic regions from SNP 161450 to 162050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,809 DEBUG Processing 175/677 atomic regions from SNP 52302 to 52902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,851 DEBUG Processing 505/717 atomic regions from SNP 151216 to 151816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,922 DEBUG Processing 540/723 atomic regions from SNP 161750 to 162350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,062 DEBUG Processing 176/677 atomic regions from SNP 52602 to 53202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,095 DEBUG Processing 506/717 atomic regions from SNP 151516 to 152116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,140 DEBUG Processing 541/723 atomic regions from SNP 162050 to 162650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,320 DEBUG Processing 177/677 atomic regions from SNP 52902 to 53502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,346 DEBUG Processing 507/717 atomic regions from SNP 151816 to 152416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,366 DEBUG Processing 542/723 atomic regions from SNP 162350 to 162950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,565 DEBUG Processing 178/677 atomic regions from SNP 53202 to 53802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,585 DEBUG Processing 508/717 atomic regions from SNP 152116 to 152716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,604 DEBUG Processing 543/723 atomic regions from SNP 162650 to 163250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,788 DEBUG Processing 179/677 atomic regions from SNP 53502 to 54102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,834 DEBUG Processing 544/723 atomic regions from SNP 162950 to 163550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,837 DEBUG Processing 509/717 atomic regions from SNP 152416 to 153016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,006 DEBUG Processing 180/677 atomic regions from SNP 53802 to 54402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,064 DEBUG Processing 545/723 atomic regions from SNP 163250 to 163850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,080 DEBUG Processing 510/717 atomic regions from SNP 152716 to 153316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,231 DEBUG Processing 181/677 atomic regions from SNP 54102 to 54702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,295 DEBUG Processing 546/723 atomic regions from SNP 163550 to 164150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,306 DEBUG Processing 511/717 atomic regions from SNP 153016 to 153616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,454 DEBUG Processing 182/677 atomic regions from SNP 54402 to 55002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,525 DEBUG Processing 547/723 atomic regions from SNP 163850 to 164450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,531 DEBUG Processing 512/717 atomic regions from SNP 153316 to 153916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,681 DEBUG Processing 183/677 atomic regions from SNP 54702 to 55302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,761 DEBUG Processing 513/717 atomic regions from SNP 153616 to 154216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,766 DEBUG Processing 548/723 atomic regions from SNP 164150 to 164750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,906 DEBUG Processing 184/677 atomic regions from SNP 55002 to 55602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,995 DEBUG Processing 514/717 atomic regions from SNP 153916 to 154516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,020 DEBUG Processing 549/723 atomic regions from SNP 164450 to 165050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,137 DEBUG Processing 185/677 atomic regions from SNP 55302 to 55902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,236 DEBUG Processing 515/717 atomic regions from SNP 154216 to 154816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,241 DEBUG Processing 550/723 atomic regions from SNP 164750 to 165350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,378 DEBUG Processing 186/677 atomic regions from SNP 55602 to 56202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,453 DEBUG Processing 516/717 atomic regions from SNP 154516 to 155116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,458 DEBUG Processing 551/723 atomic regions from SNP 165050 to 165650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,632 DEBUG Processing 187/677 atomic regions from SNP 55902 to 56502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,677 DEBUG Processing 517/717 atomic regions from SNP 154816 to 155416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,687 DEBUG Processing 552/723 atomic regions from SNP 165350 to 165950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,878 DEBUG Processing 188/677 atomic regions from SNP 56202 to 56802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,900 DEBUG Processing 518/717 atomic regions from SNP 155116 to 155716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,923 DEBUG Processing 553/723 atomic regions from SNP 165650 to 166250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,119 DEBUG Processing 189/677 atomic regions from SNP 56502 to 57102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,122 DEBUG Processing 519/717 atomic regions from SNP 155416 to 156016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,162 DEBUG Processing 554/723 atomic regions from SNP 165950 to 166550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,345 DEBUG Processing 520/717 atomic regions from SNP 155716 to 156316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,347 DEBUG Processing 190/677 atomic regions from SNP 56802 to 57402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,399 DEBUG Processing 555/723 atomic regions from SNP 166250 to 166850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,574 DEBUG Processing 521/717 atomic regions from SNP 156016 to 156616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,575 DEBUG Processing 191/677 atomic regions from SNP 57102 to 57702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,652 DEBUG Processing 556/723 atomic regions from SNP 166550 to 167150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,794 DEBUG Processing 192/677 atomic regions from SNP 57402 to 58002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,796 DEBUG Processing 522/717 atomic regions from SNP 156316 to 156916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,890 DEBUG Processing 557/723 atomic regions from SNP 166850 to 167450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,017 DEBUG Processing 193/677 atomic regions from SNP 57702 to 58302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,019 DEBUG Processing 523/717 atomic regions from SNP 156616 to 157216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,118 DEBUG Processing 558/723 atomic regions from SNP 167150 to 167750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,231 DEBUG Processing 194/677 atomic regions from SNP 58002 to 58602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,237 DEBUG Processing 524/717 atomic regions from SNP 156916 to 157516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,349 DEBUG Processing 559/723 atomic regions from SNP 167450 to 168050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,452 DEBUG Processing 195/677 atomic regions from SNP 58302 to 58902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,455 DEBUG Processing 525/717 atomic regions from SNP 157216 to 157816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,578 DEBUG Processing 560/723 atomic regions from SNP 167750 to 168350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,670 DEBUG Processing 196/677 atomic regions from SNP 58602 to 59202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,682 DEBUG Processing 526/717 atomic regions from SNP 157516 to 158116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,805 DEBUG Processing 561/723 atomic regions from SNP 168050 to 168650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,888 DEBUG Processing 197/677 atomic regions from SNP 58902 to 59502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,902 DEBUG Processing 527/717 atomic regions from SNP 157816 to 158416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,039 DEBUG Processing 562/723 atomic regions from SNP 168350 to 168950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,120 DEBUG Processing 198/677 atomic regions from SNP 59202 to 59802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,128 DEBUG Processing 528/717 atomic regions from SNP 158116 to 158716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,269 DEBUG Processing 563/723 atomic regions from SNP 168650 to 169250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,354 DEBUG Processing 529/717 atomic regions from SNP 158416 to 159016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,386 DEBUG Processing 199/677 atomic regions from SNP 59502 to 60102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,493 DEBUG Processing 564/723 atomic regions from SNP 168950 to 169550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,572 DEBUG Processing 530/717 atomic regions from SNP 158716 to 159316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,639 DEBUG Processing 200/677 atomic regions from SNP 59802 to 60402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,716 DEBUG Processing 565/723 atomic regions from SNP 169250 to 169850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,798 DEBUG Processing 531/717 atomic regions from SNP 159016 to 159616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,873 DEBUG Processing 201/677 atomic regions from SNP 60102 to 60702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,939 DEBUG Processing 566/723 atomic regions from SNP 169550 to 170150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,019 DEBUG Processing 532/717 atomic regions from SNP 159316 to 159916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,100 DEBUG Processing 202/677 atomic regions from SNP 60402 to 61002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,163 DEBUG Processing 567/723 atomic regions from SNP 169850 to 170450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,235 DEBUG Processing 533/717 atomic regions from SNP 159616 to 160216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,329 DEBUG Processing 203/677 atomic regions from SNP 60702 to 61302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,389 DEBUG Processing 568/723 atomic regions from SNP 170150 to 170750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,453 DEBUG Processing 534/717 atomic regions from SNP 159916 to 160516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,584 DEBUG Processing 204/677 atomic regions from SNP 61002 to 61602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,612 DEBUG Processing 569/723 atomic regions from SNP 170450 to 171050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,671 DEBUG Processing 535/717 atomic regions from SNP 160216 to 160816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,824 DEBUG Processing 205/677 atomic regions from SNP 61302 to 61902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,841 DEBUG Processing 570/723 atomic regions from SNP 170750 to 171350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,890 DEBUG Processing 536/717 atomic regions from SNP 160516 to 161116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,047 DEBUG Processing 206/677 atomic regions from SNP 61602 to 62202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,085 DEBUG Processing 571/723 atomic regions from SNP 171050 to 171650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,105 DEBUG Processing 537/717 atomic regions from SNP 160816 to 161416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,272 DEBUG Processing 207/677 atomic regions from SNP 61902 to 62502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,331 DEBUG Processing 572/723 atomic regions from SNP 171350 to 171950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,332 DEBUG Processing 538/717 atomic regions from SNP 161116 to 161716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,494 DEBUG Processing 208/677 atomic regions from SNP 62202 to 62802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,552 DEBUG Processing 539/717 atomic regions from SNP 161416 to 162016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,570 DEBUG Processing 573/723 atomic regions from SNP 171650 to 172250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,715 DEBUG Processing 209/677 atomic regions from SNP 62502 to 63102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,768 DEBUG Processing 540/717 atomic regions from SNP 161716 to 162316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,822 DEBUG Processing 574/723 atomic regions from SNP 171950 to 172550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,935 DEBUG Processing 210/677 atomic regions from SNP 62802 to 63402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,990 DEBUG Processing 541/717 atomic regions from SNP 162016 to 162616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,048 DEBUG Processing 575/723 atomic regions from SNP 172250 to 172850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,156 DEBUG Processing 211/677 atomic regions from SNP 63102 to 63702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,212 DEBUG Processing 542/717 atomic regions from SNP 162316 to 162916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,278 DEBUG Processing 576/723 atomic regions from SNP 172550 to 173150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,375 DEBUG Processing 212/677 atomic regions from SNP 63402 to 64002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,429 DEBUG Processing 543/717 atomic regions from SNP 162616 to 163216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,503 DEBUG Processing 577/723 atomic regions from SNP 172850 to 173450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,596 DEBUG Processing 213/677 atomic regions from SNP 63702 to 64302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,667 DEBUG Processing 544/717 atomic regions from SNP 162916 to 163516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,732 DEBUG Processing 578/723 atomic regions from SNP 173150 to 173750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,817 DEBUG Processing 214/677 atomic regions from SNP 64002 to 64602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,896 DEBUG Processing 545/717 atomic regions from SNP 163216 to 163816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,976 DEBUG Processing 579/723 atomic regions from SNP 173450 to 174050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,037 DEBUG Processing 215/677 atomic regions from SNP 64302 to 64902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,135 DEBUG Processing 546/717 atomic regions from SNP 163516 to 164116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,229 DEBUG Processing 580/723 atomic regions from SNP 173750 to 174350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,258 DEBUG Processing 216/677 atomic regions from SNP 64602 to 65202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,376 DEBUG Processing 547/717 atomic regions from SNP 163816 to 164416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,456 DEBUG Processing 581/723 atomic regions from SNP 174050 to 174650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,482 DEBUG Processing 217/677 atomic regions from SNP 64902 to 65502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,612 DEBUG Processing 548/717 atomic regions from SNP 164116 to 164716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,686 DEBUG Processing 582/723 atomic regions from SNP 174350 to 174950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,725 DEBUG Processing 218/677 atomic regions from SNP 65202 to 65802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,832 DEBUG Processing 549/717 atomic regions from SNP 164416 to 165016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,925 DEBUG Processing 583/723 atomic regions from SNP 174650 to 175250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,957 DEBUG Processing 219/677 atomic regions from SNP 65502 to 66102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,070 DEBUG Processing 550/717 atomic regions from SNP 164716 to 165316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,140 DEBUG Processing 584/723 atomic regions from SNP 174950 to 175550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,198 DEBUG Processing 220/677 atomic regions from SNP 65802 to 66402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,313 DEBUG Processing 551/717 atomic regions from SNP 165016 to 165616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,353 DEBUG Processing 585/723 atomic regions from SNP 175250 to 175850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,412 DEBUG Processing 221/677 atomic regions from SNP 66102 to 66702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,552 DEBUG Processing 552/717 atomic regions from SNP 165316 to 165916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,570 DEBUG Processing 586/723 atomic regions from SNP 175550 to 176150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,622 DEBUG Processing 222/677 atomic regions from SNP 66402 to 67002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,798 DEBUG Processing 553/717 atomic regions from SNP 165616 to 166216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,798 DEBUG Processing 587/723 atomic regions from SNP 175850 to 176450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,834 DEBUG Processing 223/677 atomic regions from SNP 66702 to 67302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,025 DEBUG Processing 588/723 atomic regions from SNP 176150 to 176750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,035 DEBUG Processing 554/717 atomic regions from SNP 165916 to 166516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,052 DEBUG Processing 224/677 atomic regions from SNP 67002 to 67602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,253 DEBUG Processing 589/723 atomic regions from SNP 176450 to 177050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,270 DEBUG Processing 225/677 atomic regions from SNP 67302 to 67902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,272 DEBUG Processing 555/717 atomic regions from SNP 166216 to 166816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,483 DEBUG Processing 590/723 atomic regions from SNP 176750 to 177350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,496 DEBUG Processing 226/677 atomic regions from SNP 67602 to 68202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,515 DEBUG Processing 556/717 atomic regions from SNP 166516 to 167116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,719 DEBUG Processing 227/677 atomic regions from SNP 67902 to 68502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,723 DEBUG Processing 591/723 atomic regions from SNP 177050 to 177650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,760 DEBUG Processing 557/717 atomic regions from SNP 166816 to 167416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,937 DEBUG Processing 228/677 atomic regions from SNP 68202 to 68802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,960 DEBUG Processing 592/723 atomic regions from SNP 177350 to 177950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,988 DEBUG Processing 558/717 atomic regions from SNP 167116 to 167716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,153 DEBUG Processing 229/677 atomic regions from SNP 68502 to 69102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,200 DEBUG Processing 593/723 atomic regions from SNP 177650 to 178250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,203 DEBUG Processing 559/717 atomic regions from SNP 167416 to 168016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,368 DEBUG Processing 230/677 atomic regions from SNP 68802 to 69402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,414 DEBUG Processing 560/717 atomic regions from SNP 167716 to 168316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,435 DEBUG Processing 594/723 atomic regions from SNP 177950 to 178550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,585 DEBUG Processing 231/677 atomic regions from SNP 69102 to 69702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,634 DEBUG Processing 561/717 atomic regions from SNP 168016 to 168616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,667 DEBUG Processing 595/723 atomic regions from SNP 178250 to 178850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,826 DEBUG Processing 232/677 atomic regions from SNP 69402 to 70002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,871 DEBUG Processing 562/717 atomic regions from SNP 168316 to 168916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,907 DEBUG Processing 596/723 atomic regions from SNP 178550 to 179150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,057 DEBUG Processing 233/677 atomic regions from SNP 69702 to 70302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,121 DEBUG Processing 563/717 atomic regions from SNP 168616 to 169216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,151 DEBUG Processing 597/723 atomic regions from SNP 178850 to 179450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,298 DEBUG Processing 234/677 atomic regions from SNP 70002 to 70602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,382 DEBUG Processing 564/717 atomic regions from SNP 168916 to 169516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,388 DEBUG Processing 598/723 atomic regions from SNP 179150 to 179750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,450 DEBUG Segmenting atomic regions: 2025-01-31 09:55:04,536 DEBUG Processing 1/660 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,539 DEBUG Processing 235/677 atomic regions from SNP 70302 to 70902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,564 DEBUG Segmenting atomic regions: 2025-01-31 09:55:04,613 DEBUG Processing 599/723 atomic regions from SNP 179450 to 180050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,629 DEBUG Processing 565/717 atomic regions from SNP 169216 to 169816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,643 DEBUG Processing 1/596 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,748 DEBUG Processing 2/660 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,755 DEBUG Processing 236/677 atomic regions from SNP 70602 to 71202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,841 DEBUG Processing 600/723 atomic regions from SNP 179750 to 180350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,862 DEBUG Processing 2/596 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:04,883 DEBUG Processing 566/717 atomic regions from SNP 169516 to 170116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,977 DEBUG Processing 3/660 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:04,978 DEBUG Processing 237/677 atomic regions from SNP 70902 to 71502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,074 DEBUG Processing 601/723 atomic regions from SNP 180050 to 180650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,084 DEBUG Processing 3/596 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,138 DEBUG Processing 567/717 atomic regions from SNP 169816 to 170416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,209 DEBUG Processing 238/677 atomic regions from SNP 71202 to 71802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,214 DEBUG Processing 4/660 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,297 DEBUG Processing 4/596 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,309 DEBUG Processing 602/723 atomic regions from SNP 180350 to 180950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,389 DEBUG Processing 568/717 atomic regions from SNP 170116 to 170716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,449 DEBUG Processing 239/677 atomic regions from SNP 71502 to 72102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,452 DEBUG Processing 5/660 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,508 DEBUG Processing 5/596 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,538 DEBUG Processing 603/723 atomic regions from SNP 180650 to 181250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,636 DEBUG Processing 569/717 atomic regions from SNP 170416 to 171016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,681 DEBUG Processing 240/677 atomic regions from SNP 71802 to 72402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,695 DEBUG Processing 6/660 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,745 DEBUG Processing 6/596 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,766 DEBUG Processing 604/723 atomic regions from SNP 180950 to 181550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,888 DEBUG Processing 570/717 atomic regions from SNP 170716 to 171316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,933 DEBUG Processing 241/677 atomic regions from SNP 72102 to 72702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,945 DEBUG Processing 7/660 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:05,965 DEBUG Processing 7/596 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:05,995 DEBUG Processing 605/723 atomic regions from SNP 181250 to 181850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,126 DEBUG Processing 571/717 atomic regions from SNP 171016 to 171616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,193 DEBUG Processing 8/660 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,196 DEBUG Processing 8/596 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,204 DEBUG Processing 242/677 atomic regions from SNP 72402 to 73002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,247 DEBUG Processing 606/723 atomic regions from SNP 181550 to 182150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,685 DEBUG Processing 572/717 atomic regions from SNP 171316 to 171916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,785 DEBUG Processing 9/596 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:06,793 DEBUG Processing 9/660 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:06,812 DEBUG Processing 243/677 atomic regions from SNP 72702 to 73302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,879 DEBUG Processing 607/723 atomic regions from SNP 181850 to 182450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,962 DEBUG Processing 573/717 atomic regions from SNP 171616 to 172216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,037 DEBUG Processing 10/596 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,043 DEBUG Processing 10/660 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,074 DEBUG Processing 244/677 atomic regions from SNP 73002 to 73602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,153 DEBUG Processing 608/723 atomic regions from SNP 182150 to 182750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,254 DEBUG Processing 574/717 atomic regions from SNP 171916 to 172516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,293 DEBUG Processing 11/596 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,311 DEBUG Processing 11/660 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,353 DEBUG Processing 245/677 atomic regions from SNP 73302 to 73902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,441 DEBUG Processing 609/723 atomic regions from SNP 182450 to 183050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,537 DEBUG Processing 575/717 atomic regions from SNP 172216 to 172816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,566 DEBUG Processing 12/596 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,591 DEBUG Processing 12/660 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,597 DEBUG Processing 246/677 atomic regions from SNP 73602 to 74202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,692 DEBUG Processing 610/723 atomic regions from SNP 182750 to 183350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,834 DEBUG Processing 576/717 atomic regions from SNP 172516 to 173116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,857 DEBUG Processing 247/677 atomic regions from SNP 73902 to 74502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,866 DEBUG Processing 13/660 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:07,876 DEBUG Processing 13/596 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:07,983 DEBUG Processing 611/723 atomic regions from SNP 183050 to 183650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,187 DEBUG Processing 14/660 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,189 DEBUG Processing 577/717 atomic regions from SNP 172816 to 173416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,216 DEBUG Processing 248/677 atomic regions from SNP 74202 to 74802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,244 DEBUG Processing 14/596 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,351 DEBUG Processing 612/723 atomic regions from SNP 183350 to 183950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,559 DEBUG Processing 15/660 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,565 DEBUG Processing 578/717 atomic regions from SNP 173116 to 173716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,605 DEBUG Processing 15/596 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,633 DEBUG Processing 249/677 atomic regions from SNP 74502 to 75102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,756 DEBUG Processing 613/723 atomic regions from SNP 183650 to 184250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,849 DEBUG Processing 16/660 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:08,887 DEBUG Processing 579/717 atomic regions from SNP 173416 to 174016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,911 DEBUG Processing 16/596 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:08,953 DEBUG Processing 250/677 atomic regions from SNP 74802 to 75402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,053 DEBUG Processing 614/723 atomic regions from SNP 183950 to 184550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,110 DEBUG Processing 17/660 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,149 DEBUG Processing 580/717 atomic regions from SNP 173716 to 174316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,186 DEBUG Processing 17/596 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,233 DEBUG Processing 251/677 atomic regions from SNP 75102 to 75702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,448 DEBUG Processing 615/723 atomic regions from SNP 184250 to 184850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,465 DEBUG Processing 18/660 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,524 DEBUG Processing 581/717 atomic regions from SNP 174016 to 174616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,570 DEBUG Processing 18/596 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:09,623 DEBUG Processing 252/677 atomic regions from SNP 75402 to 76002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,857 DEBUG Processing 19/660 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:09,904 DEBUG Processing 616/723 atomic regions from SNP 184550 to 185150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,910 DEBUG Processing 582/717 atomic regions from SNP 174316 to 174916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,008 DEBUG Processing 19/596 atomic regions from SNP 5418 to 6019 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,037 DEBUG Processing 253/677 atomic regions from SNP 75702 to 76302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,263 DEBUG Processing 20/660 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,350 DEBUG Processing 617/723 atomic regions from SNP 184850 to 185450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,361 DEBUG Processing 583/717 atomic regions from SNP 174616 to 175216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,418 DEBUG Processing 20/596 atomic regions from SNP 5719 to 6320 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,454 DEBUG Processing 254/677 atomic regions from SNP 76002 to 76602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,601 DEBUG Processing 21/660 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:10,784 DEBUG Processing 618/723 atomic regions from SNP 185150 to 185750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,834 DEBUG Processing 584/717 atomic regions from SNP 174916 to 175516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,840 DEBUG Processing 21/596 atomic regions from SNP 6020 to 6621 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:10,854 DEBUG Processing 255/677 atomic regions from SNP 76302 to 76902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,871 DEBUG Processing 22/660 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,097 DEBUG Processing 619/723 atomic regions from SNP 185450 to 186050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,199 DEBUG Processing 23/660 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,201 DEBUG Processing 22/596 atomic regions from SNP 6321 to 6922 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,208 DEBUG Processing 585/717 atomic regions from SNP 175216 to 175816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,214 DEBUG Processing 256/677 atomic regions from SNP 76602 to 77202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,449 DEBUG Processing 620/723 atomic regions from SNP 185750 to 186350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,523 DEBUG Processing 24/660 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,553 DEBUG Processing 23/596 atomic regions from SNP 6622 to 7223 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:11,605 DEBUG Processing 586/717 atomic regions from SNP 175516 to 176116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,618 DEBUG Processing 257/677 atomic regions from SNP 76902 to 77502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,890 DEBUG Processing 621/723 atomic regions from SNP 186050 to 186650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,913 DEBUG Processing 25/660 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:11,971 DEBUG Processing 24/596 atomic regions from SNP 6923 to 7524 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,041 DEBUG Processing 587/717 atomic regions from SNP 175816 to 176416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,057 DEBUG Processing 258/677 atomic regions from SNP 77202 to 77802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,309 DEBUG Processing 26/660 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,371 DEBUG Processing 622/723 atomic regions from SNP 186350 to 186950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,409 DEBUG Processing 25/596 atomic regions from SNP 7224 to 7825 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,513 DEBUG Processing 588/717 atomic regions from SNP 176116 to 176716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,518 DEBUG Processing 259/677 atomic regions from SNP 77502 to 78102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,756 DEBUG Processing 27/660 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:12,830 DEBUG Processing 623/723 atomic regions from SNP 186650 to 187250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,871 DEBUG Processing 26/596 atomic regions from SNP 7525 to 8126 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:12,964 DEBUG Processing 260/677 atomic regions from SNP 77802 to 78402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,991 DEBUG Processing 589/717 atomic regions from SNP 176416 to 177016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,219 DEBUG Processing 28/660 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,304 DEBUG Processing 27/596 atomic regions from SNP 7826 to 8427 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,308 DEBUG Processing 624/723 atomic regions from SNP 186950 to 187550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,397 DEBUG Processing 261/677 atomic regions from SNP 78102 to 78702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,483 DEBUG Processing 590/717 atomic regions from SNP 176716 to 177316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,630 DEBUG Processing 29/660 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:13,753 DEBUG Processing 28/596 atomic regions from SNP 8127 to 8728 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:13,790 DEBUG Processing 625/723 atomic regions from SNP 187250 to 187850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,829 DEBUG Processing 262/677 atomic regions from SNP 78402 to 79002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,960 DEBUG Processing 591/717 atomic regions from SNP 177016 to 177616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,002 DEBUG Processing 30/660 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,170 DEBUG Processing 29/596 atomic regions from SNP 8428 to 9029 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,231 DEBUG Processing 263/677 atomic regions from SNP 78702 to 79302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,257 DEBUG Processing 626/723 atomic regions from SNP 187550 to 188150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,416 DEBUG Processing 592/717 atomic regions from SNP 177316 to 177916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,436 DEBUG Processing 31/660 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,624 DEBUG Processing 30/596 atomic regions from SNP 8729 to 9330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:14,663 DEBUG Processing 264/677 atomic regions from SNP 79002 to 79602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,714 DEBUG Processing 627/723 atomic regions from SNP 187850 to 188450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,857 DEBUG Processing 593/717 atomic regions from SNP 177616 to 178216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,869 DEBUG Processing 32/660 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:14,999 DEBUG Processing 265/677 atomic regions from SNP 79302 to 79902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,004 DEBUG Processing 31/596 atomic regions from SNP 9030 to 9631 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,053 DEBUG Processing 628/723 atomic regions from SNP 188150 to 188750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,133 DEBUG Processing 33/660 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,162 DEBUG Processing 594/717 atomic regions from SNP 177916 to 178516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,371 DEBUG Processing 32/596 atomic regions from SNP 9331 to 9932 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,382 DEBUG Processing 266/677 atomic regions from SNP 79602 to 80202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,432 DEBUG Processing 34/660 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,436 DEBUG Processing 629/723 atomic regions from SNP 188450 to 189050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,486 DEBUG Processing 595/717 atomic regions from SNP 178216 to 178816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,724 DEBUG Processing 33/596 atomic regions from SNP 9632 to 10233 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:15,770 DEBUG Processing 35/660 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:15,771 DEBUG Processing 267/677 atomic regions from SNP 79902 to 80502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,870 DEBUG Processing 596/717 atomic regions from SNP 178516 to 179116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,895 DEBUG Processing 630/723 atomic regions from SNP 188750 to 189350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,089 DEBUG Processing 34/596 atomic regions from SNP 9933 to 10534 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,103 DEBUG Processing 36/660 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,149 DEBUG Processing 268/677 atomic regions from SNP 80202 to 80802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,190 DEBUG Processing 597/717 atomic regions from SNP 178816 to 179416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,221 DEBUG Processing 631/723 atomic regions from SNP 189050 to 189650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,459 DEBUG Processing 37/660 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,463 DEBUG Processing 35/596 atomic regions from SNP 10234 to 10835 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:16,591 DEBUG Processing 269/677 atomic regions from SNP 80502 to 81102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,603 DEBUG Processing 598/717 atomic regions from SNP 179116 to 179716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,670 DEBUG Processing 632/723 atomic regions from SNP 189350 to 189950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,843 DEBUG Processing 38/660 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:16,881 DEBUG Processing 36/596 atomic regions from SNP 10535 to 11136 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,036 DEBUG Processing 270/677 atomic regions from SNP 80802 to 81402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,040 DEBUG Processing 599/717 atomic regions from SNP 179416 to 180016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,155 DEBUG Processing 633/723 atomic regions from SNP 189650 to 190250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,245 DEBUG Processing 39/660 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,333 DEBUG Processing 37/596 atomic regions from SNP 10836 to 11437 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,499 DEBUG Processing 600/717 atomic regions from SNP 179716 to 180316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,505 DEBUG Processing 271/677 atomic regions from SNP 81102 to 81702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,552 DEBUG Processing 40/660 atomic regions from SNP 11739 to 12340 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,556 DEBUG Processing 634/723 atomic regions from SNP 189950 to 190550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,642 DEBUG Processing 38/596 atomic regions from SNP 11137 to 11738 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:17,866 DEBUG Processing 601/717 atomic regions from SNP 180016 to 180616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,880 DEBUG Processing 272/677 atomic regions from SNP 81402 to 82002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,891 DEBUG Processing 41/660 atomic regions from SNP 12040 to 12641 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:17,925 DEBUG Processing 635/723 atomic regions from SNP 190250 to 190850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,022 DEBUG Processing 39/596 atomic regions from SNP 11438 to 12039 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,253 DEBUG Processing 273/677 atomic regions from SNP 81702 to 82302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,268 DEBUG Processing 42/660 atomic regions from SNP 12341 to 12942 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,270 DEBUG Processing 602/717 atomic regions from SNP 180316 to 180916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,331 DEBUG Processing 636/723 atomic regions from SNP 190550 to 191150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,373 DEBUG Processing 40/596 atomic regions from SNP 11739 to 12340 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,633 DEBUG Processing 274/677 atomic regions from SNP 82002 to 82602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,646 DEBUG Processing 43/660 atomic regions from SNP 12642 to 13243 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:18,692 DEBUG Processing 603/717 atomic regions from SNP 180616 to 181216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,758 DEBUG Processing 637/723 atomic regions from SNP 190850 to 191450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,782 DEBUG Processing 41/596 atomic regions from SNP 12040 to 12641 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:18,995 DEBUG Processing 44/660 atomic regions from SNP 12943 to 13544 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,000 DEBUG Processing 275/677 atomic regions from SNP 82302 to 82902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,026 DEBUG Processing 604/717 atomic regions from SNP 180916 to 181516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,174 DEBUG Processing 42/596 atomic regions from SNP 12341 to 12942 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,181 DEBUG Processing 638/723 atomic regions from SNP 191150 to 191750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,367 DEBUG Processing 45/660 atomic regions from SNP 13244 to 13845 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,398 DEBUG Processing 276/677 atomic regions from SNP 82602 to 83202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,429 DEBUG Processing 605/717 atomic regions from SNP 181216 to 181816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,568 DEBUG Processing 43/596 atomic regions from SNP 12642 to 13243 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:19,635 DEBUG Processing 639/723 atomic regions from SNP 191450 to 192050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,742 DEBUG Processing 46/660 atomic regions from SNP 13545 to 14146 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:19,796 DEBUG Processing 277/677 atomic regions from SNP 82902 to 83502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,820 DEBUG Processing 606/717 atomic regions from SNP 181516 to 182116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,945 DEBUG Processing 44/596 atomic regions from SNP 12943 to 13544 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,035 DEBUG Processing 640/723 atomic regions from SNP 191750 to 192350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,132 DEBUG Processing 47/660 atomic regions from SNP 13846 to 14447 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,198 DEBUG Processing 607/717 atomic regions from SNP 181816 to 182416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,201 DEBUG Processing 278/677 atomic regions from SNP 83202 to 83802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,321 DEBUG Processing 45/596 atomic regions from SNP 13244 to 13845 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,449 DEBUG Processing 641/723 atomic regions from SNP 192050 to 192650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,498 DEBUG Processing 48/660 atomic regions from SNP 14147 to 14748 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,557 DEBUG Processing 608/717 atomic regions from SNP 182116 to 182716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,564 DEBUG Processing 279/677 atomic regions from SNP 83502 to 84102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,592 DEBUG Processing 46/596 atomic regions from SNP 13545 to 14146 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,714 DEBUG Processing 49/660 atomic regions from SNP 14448 to 15049 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,719 DEBUG Processing 642/723 atomic regions from SNP 192350 to 192950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,856 DEBUG Processing 609/717 atomic regions from SNP 182416 to 183016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,868 DEBUG Processing 280/677 atomic regions from SNP 83802 to 84402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,894 DEBUG Processing 47/596 atomic regions from SNP 13846 to 14447 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:20,996 DEBUG Processing 50/660 atomic regions from SNP 14749 to 15350 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,044 DEBUG Processing 643/723 atomic regions from SNP 192650 to 193250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,184 DEBUG Processing 281/677 atomic regions from SNP 84102 to 84702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,186 DEBUG Processing 610/717 atomic regions from SNP 182716 to 183316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,218 DEBUG Processing 48/596 atomic regions from SNP 14147 to 14748 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,293 DEBUG Processing 51/660 atomic regions from SNP 15050 to 15651 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,399 DEBUG Processing 644/723 atomic regions from SNP 192950 to 193550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,509 DEBUG Processing 611/717 atomic regions from SNP 183016 to 183616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,540 DEBUG Processing 282/677 atomic regions from SNP 84402 to 85002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,626 DEBUG Processing 49/596 atomic regions from SNP 14448 to 15049 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:21,642 DEBUG Processing 52/660 atomic regions from SNP 15351 to 15952 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,814 DEBUG Processing 645/723 atomic regions from SNP 193250 to 193850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,828 DEBUG Processing 612/717 atomic regions from SNP 183316 to 183916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,907 DEBUG Processing 283/677 atomic regions from SNP 84702 to 85302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,912 DEBUG Processing 53/660 atomic regions from SNP 15652 to 16253 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,925 DEBUG Processing 50/596 atomic regions from SNP 14749 to 15350 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,100 DEBUG Processing 613/717 atomic regions from SNP 183616 to 184216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,114 DEBUG Processing 646/723 atomic regions from SNP 193550 to 194150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,161 DEBUG Processing 54/660 atomic regions from SNP 15953 to 16554 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,186 DEBUG Processing 51/596 atomic regions from SNP 15050 to 15651 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,190 DEBUG Processing 284/677 atomic regions from SNP 85002 to 85602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,330 DEBUG Processing 614/717 atomic regions from SNP 183916 to 184516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,344 DEBUG Processing 647/723 atomic regions from SNP 193850 to 194450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,378 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:55:22,388 DEBUG Processing 55/660 atomic regions from SNP 16254 to 16855 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,444 DEBUG Processing 52/596 atomic regions from SNP 15351 to 15952 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,451 DEBUG Processing 285/677 atomic regions from SNP 85302 to 85902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,608 DEBUG Processing 615/717 atomic regions from SNP 184216 to 184816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,627 DEBUG Processing 648/723 atomic regions from SNP 194150 to 194750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,656 DEBUG Processing 56/660 atomic regions from SNP 16555 to 17156 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,778 DEBUG Processing 286/677 atomic regions from SNP 85602 to 86202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,806 DEBUG Processing 53/596 atomic regions from SNP 15652 to 16253 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:22,932 DEBUG Processing 649/723 atomic regions from SNP 194450 to 195050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,944 DEBUG Processing 616/717 atomic regions from SNP 184516 to 185116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,948 DEBUG Processing 57/660 atomic regions from SNP 16856 to 17457 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,047 DEBUG Processing 287/677 atomic regions from SNP 85902 to 86502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,098 DEBUG Processing 54/596 atomic regions from SNP 15953 to 16554 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,188 DEBUG Processing 58/660 atomic regions from SNP 17157 to 17758 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,188 DEBUG Processing 617/717 atomic regions from SNP 184816 to 185416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,193 DEBUG Processing 650/723 atomic regions from SNP 194750 to 195350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,274 DEBUG Processing 288/677 atomic regions from SNP 86202 to 86802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,351 DEBUG Processing 55/596 atomic regions from SNP 16254 to 16855 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,432 DEBUG Processing 59/660 atomic regions from SNP 17458 to 18059 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,445 DEBUG Processing 618/717 atomic regions from SNP 185116 to 185716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,455 DEBUG Processing 651/723 atomic regions from SNP 195050 to 195650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,585 DEBUG Processing 289/677 atomic regions from SNP 86502 to 87102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,687 DEBUG Processing 56/596 atomic regions from SNP 16555 to 17156 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:23,713 DEBUG Processing 60/660 atomic regions from SNP 17759 to 18360 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,739 DEBUG Processing 619/717 atomic regions from SNP 185416 to 186016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,742 DEBUG Processing 652/723 atomic regions from SNP 195350 to 195950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,874 DEBUG Processing 290/677 atomic regions from SNP 86802 to 87402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,950 DEBUG Processing 61/660 atomic regions from SNP 18060 to 18661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,987 DEBUG Processing 57/596 atomic regions from SNP 16856 to 17457 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,026 DEBUG Processing 620/717 atomic regions from SNP 185716 to 186316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,041 DEBUG Processing 653/723 atomic regions from SNP 195650 to 196250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,227 DEBUG Processing 291/677 atomic regions from SNP 87102 to 87702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,265 DEBUG Processing 62/660 atomic regions from SNP 18361 to 18962 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,320 DEBUG Processing 58/596 atomic regions from SNP 17157 to 17758 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,338 DEBUG Processing 654/723 atomic regions from SNP 195950 to 196550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,353 DEBUG Processing 621/717 atomic regions from SNP 186016 to 186616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,472 DEBUG Processing 292/677 atomic regions from SNP 87402 to 88002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,504 DEBUG Processing 63/660 atomic regions from SNP 18662 to 19263 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,620 DEBUG Processing 59/596 atomic regions from SNP 17458 to 18059 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,637 DEBUG Processing 655/723 atomic regions from SNP 196250 to 196850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,650 DEBUG Processing 622/717 atomic regions from SNP 186316 to 186916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,730 DEBUG Processing 293/677 atomic regions from SNP 87702 to 88302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,763 DEBUG Processing 64/660 atomic regions from SNP 18963 to 19564 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,875 DEBUG Processing 60/596 atomic regions from SNP 17759 to 18360 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:24,892 DEBUG Processing 656/723 atomic regions from SNP 196550 to 197150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,913 DEBUG Processing 623/717 atomic regions from SNP 186616 to 187216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,947 DEBUG Processing 294/677 atomic regions from SNP 88002 to 88602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,960 DEBUG Processing 65/660 atomic regions from SNP 19264 to 19865 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,112 DEBUG Processing 61/596 atomic regions from SNP 18060 to 18661 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,124 DEBUG Processing 657/723 atomic regions from SNP 196850 to 197450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,150 DEBUG Processing 624/717 atomic regions from SNP 186916 to 187516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,160 DEBUG Processing 66/660 atomic regions from SNP 19565 to 20166 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,167 DEBUG Processing 295/677 atomic regions from SNP 88302 to 88902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,344 DEBUG Processing 62/596 atomic regions from SNP 18361 to 18962 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,361 DEBUG Processing 658/723 atomic regions from SNP 197150 to 197750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,365 DEBUG Processing 67/660 atomic regions from SNP 19866 to 20467 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,385 DEBUG Processing 625/717 atomic regions from SNP 187216 to 187816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,389 DEBUG Processing 296/677 atomic regions from SNP 88602 to 89202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,553 DEBUG Processing 63/596 atomic regions from SNP 18662 to 19263 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,575 DEBUG Processing 68/660 atomic regions from SNP 20167 to 20768 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,592 DEBUG Processing 659/723 atomic regions from SNP 197450 to 198050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,612 DEBUG Processing 297/677 atomic regions from SNP 88902 to 89502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,629 DEBUG Processing 626/717 atomic regions from SNP 187516 to 188116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,760 DEBUG Processing 64/596 atomic regions from SNP 18963 to 19564 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,776 DEBUG Processing 69/660 atomic regions from SNP 20468 to 21069 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,820 DEBUG Processing 660/723 atomic regions from SNP 197750 to 198350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,834 DEBUG Processing 298/677 atomic regions from SNP 89202 to 89802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,845 DEBUG Processing 627/717 atomic regions from SNP 187816 to 188416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,966 DEBUG Processing 65/596 atomic regions from SNP 19264 to 19865 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:25,985 DEBUG Processing 70/660 atomic regions from SNP 20769 to 21370 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,069 DEBUG Processing 661/723 atomic regions from SNP 198050 to 198650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,085 DEBUG Processing 299/677 atomic regions from SNP 89502 to 90102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,092 DEBUG Processing 628/717 atomic regions from SNP 188116 to 188716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,166 DEBUG Processing 66/596 atomic regions from SNP 19565 to 20166 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,190 DEBUG Processing 71/660 atomic regions from SNP 21070 to 21671 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,317 DEBUG Processing 300/677 atomic regions from SNP 89802 to 90402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,317 DEBUG Processing 662/723 atomic regions from SNP 198350 to 198950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,324 DEBUG Processing 629/717 atomic regions from SNP 188416 to 189016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,374 DEBUG Processing 67/596 atomic regions from SNP 19866 to 20467 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,391 DEBUG Processing 72/660 atomic regions from SNP 21371 to 21972 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,534 DEBUG Processing 630/717 atomic regions from SNP 188716 to 189316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,554 DEBUG Processing 663/723 atomic regions from SNP 198650 to 199250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,570 DEBUG Processing 301/677 atomic regions from SNP 90102 to 90702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,583 DEBUG Processing 68/596 atomic regions from SNP 20167 to 20768 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,597 DEBUG Processing 73/660 atomic regions from SNP 21672 to 22273 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,785 DEBUG Processing 631/717 atomic regions from SNP 189016 to 189616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,860 DEBUG Processing 69/596 atomic regions from SNP 20468 to 21069 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:26,870 DEBUG Processing 664/723 atomic regions from SNP 198950 to 199550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,886 DEBUG Processing 74/660 atomic regions from SNP 21973 to 22574 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,894 DEBUG Processing 302/677 atomic regions from SNP 90402 to 91002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,991 DEBUG Processing 632/717 atomic regions from SNP 189316 to 189916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,075 DEBUG Processing 70/596 atomic regions from SNP 20769 to 21370 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,089 DEBUG Processing 75/660 atomic regions from SNP 22274 to 22875 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,119 DEBUG Processing 665/723 atomic regions from SNP 199250 to 199850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,147 DEBUG Processing 303/677 atomic regions from SNP 90702 to 91302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,202 DEBUG Processing 633/717 atomic regions from SNP 189616 to 190216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,282 DEBUG Processing 71/596 atomic regions from SNP 21070 to 21671 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,296 DEBUG Processing 76/660 atomic regions from SNP 22575 to 23176 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,362 DEBUG Processing 666/723 atomic regions from SNP 199550 to 200150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,422 DEBUG Processing 304/677 atomic regions from SNP 91002 to 91602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,438 DEBUG Processing 634/717 atomic regions from SNP 189916 to 190516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,491 DEBUG Processing 72/596 atomic regions from SNP 21371 to 21972 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,509 DEBUG Processing 77/660 atomic regions from SNP 22876 to 23477 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,593 DEBUG Processing 667/723 atomic regions from SNP 199850 to 200450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,652 DEBUG Processing 635/717 atomic regions from SNP 190216 to 190816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,683 DEBUG Processing 305/677 atomic regions from SNP 91302 to 91902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,702 DEBUG Processing 73/596 atomic regions from SNP 21672 to 22273 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,709 DEBUG Processing 78/660 atomic regions from SNP 23177 to 23778 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,812 DEBUG Processing 668/723 atomic regions from SNP 200150 to 200750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,861 DEBUG Processing 636/717 atomic regions from SNP 190516 to 191116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,908 DEBUG Processing 79/660 atomic regions from SNP 23478 to 24079 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,915 DEBUG Processing 74/596 atomic regions from SNP 21973 to 22574 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:27,944 DEBUG Processing 306/677 atomic regions from SNP 91602 to 92202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,036 DEBUG Processing 669/723 atomic regions from SNP 200450 to 201050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,072 DEBUG Processing 637/717 atomic regions from SNP 190816 to 191416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,110 DEBUG Processing 80/660 atomic regions from SNP 23779 to 24380 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,132 DEBUG Processing 75/596 atomic regions from SNP 22274 to 22875 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,209 DEBUG Processing 307/677 atomic regions from SNP 91902 to 92502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,257 DEBUG Processing 670/723 atomic regions from SNP 200750 to 201350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,284 DEBUG Processing 638/717 atomic regions from SNP 191116 to 191716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,319 DEBUG Processing 81/660 atomic regions from SNP 24080 to 24681 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,332 DEBUG Processing 76/596 atomic regions from SNP 22575 to 23176 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,462 DEBUG Processing 308/677 atomic regions from SNP 92202 to 92802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,478 DEBUG Processing 671/723 atomic regions from SNP 201050 to 201650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,499 DEBUG Processing 639/717 atomic regions from SNP 191416 to 192016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,532 DEBUG Processing 77/596 atomic regions from SNP 22876 to 23477 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,542 DEBUG Processing 82/660 atomic regions from SNP 24381 to 24982 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,707 DEBUG Processing 672/723 atomic regions from SNP 201350 to 201950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,707 DEBUG Processing 309/677 atomic regions from SNP 92502 to 93102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,723 DEBUG Processing 640/717 atomic regions from SNP 191716 to 192316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,737 DEBUG Processing 78/596 atomic regions from SNP 23177 to 23778 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:28,755 DEBUG Processing 83/660 atomic regions from SNP 24682 to 25283 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,979 DEBUG Processing 310/677 atomic regions from SNP 92802 to 93402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,985 DEBUG Processing 673/723 atomic regions from SNP 201650 to 202250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,001 DEBUG Processing 79/596 atomic regions from SNP 23478 to 24079 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,002 DEBUG Processing 641/717 atomic regions from SNP 192016 to 192616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,004 DEBUG Processing 84/660 atomic regions from SNP 24983 to 25584 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,214 DEBUG Processing 311/677 atomic regions from SNP 93102 to 93702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,216 DEBUG Processing 85/660 atomic regions from SNP 25284 to 25885 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,223 DEBUG Processing 674/723 atomic regions from SNP 201950 to 202550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,224 DEBUG Processing 80/596 atomic regions from SNP 23779 to 24380 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,239 DEBUG Processing 642/717 atomic regions from SNP 192316 to 192916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,455 DEBUG Processing 81/596 atomic regions from SNP 24080 to 24681 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,456 DEBUG Processing 312/677 atomic regions from SNP 93402 to 94002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,462 DEBUG Processing 86/660 atomic regions from SNP 25585 to 26186 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,473 DEBUG Processing 675/723 atomic regions from SNP 202250 to 202850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,477 DEBUG Processing 643/717 atomic regions from SNP 192616 to 193216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,697 DEBUG Processing 82/596 atomic regions from SNP 24381 to 24982 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,705 DEBUG Processing 313/677 atomic regions from SNP 93702 to 94302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,709 DEBUG Processing 87/660 atomic regions from SNP 25886 to 26487 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,734 DEBUG Processing 676/723 atomic regions from SNP 202550 to 203150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,745 DEBUG Processing 644/717 atomic regions from SNP 192916 to 193516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,907 DEBUG Processing 83/596 atomic regions from SNP 24682 to 25283 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:29,919 DEBUG Processing 88/660 atomic regions from SNP 26187 to 26788 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,928 DEBUG Processing 314/677 atomic regions from SNP 94002 to 94602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,961 DEBUG Processing 677/723 atomic regions from SNP 202850 to 203450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,970 DEBUG Processing 645/717 atomic regions from SNP 193216 to 193816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,115 DEBUG Processing 84/596 atomic regions from SNP 24983 to 25584 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,126 DEBUG Processing 89/660 atomic regions from SNP 26488 to 27089 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,153 DEBUG Processing 315/677 atomic regions from SNP 94302 to 94902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,190 DEBUG Processing 646/717 atomic regions from SNP 193516 to 194116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,195 DEBUG Processing 678/723 atomic regions from SNP 203150 to 203750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,326 DEBUG Processing 85/596 atomic regions from SNP 25284 to 25885 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,338 DEBUG Processing 90/660 atomic regions from SNP 26789 to 27390 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,382 DEBUG Processing 316/677 atomic regions from SNP 94602 to 95202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,436 DEBUG Processing 647/717 atomic regions from SNP 193816 to 194416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,441 DEBUG Processing 679/723 atomic regions from SNP 203450 to 204050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,573 DEBUG Processing 86/596 atomic regions from SNP 25585 to 26186 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,585 DEBUG Processing 91/660 atomic regions from SNP 27090 to 27691 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,688 DEBUG Processing 317/677 atomic regions from SNP 94902 to 95502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,710 DEBUG Processing 648/717 atomic regions from SNP 194116 to 194716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,728 DEBUG Processing 680/723 atomic regions from SNP 203750 to 204350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,795 DEBUG Processing 87/596 atomic regions from SNP 25886 to 26487 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:30,799 DEBUG Processing 92/660 atomic regions from SNP 27391 to 27992 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,900 DEBUG Processing 318/677 atomic regions from SNP 95202 to 95802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,924 DEBUG Processing 649/717 atomic regions from SNP 194416 to 195016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,959 DEBUG Processing 681/723 atomic regions from SNP 204050 to 204650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,004 DEBUG Processing 93/660 atomic regions from SNP 27692 to 28293 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,012 DEBUG Processing 88/596 atomic regions from SNP 26187 to 26788 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,110 DEBUG Processing 319/677 atomic regions from SNP 95502 to 96102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,131 DEBUG Processing 650/717 atomic regions from SNP 194716 to 195316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,188 DEBUG Processing 682/723 atomic regions from SNP 204350 to 204950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,208 DEBUG Processing 94/660 atomic regions from SNP 27993 to 28594 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,232 DEBUG Processing 89/596 atomic regions from SNP 26488 to 27089 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,325 DEBUG Processing 320/677 atomic regions from SNP 95802 to 96402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,340 DEBUG Processing 651/717 atomic regions from SNP 195016 to 195616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,411 DEBUG Processing 95/660 atomic regions from SNP 28294 to 28895 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,415 DEBUG Processing 683/723 atomic regions from SNP 204650 to 205250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,445 DEBUG Processing 90/596 atomic regions from SNP 26789 to 27390 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,539 DEBUG Processing 321/677 atomic regions from SNP 96102 to 96702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,548 DEBUG Processing 652/717 atomic regions from SNP 195316 to 195916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,616 DEBUG Processing 96/660 atomic regions from SNP 28595 to 29196 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,636 DEBUG Processing 684/723 atomic regions from SNP 204950 to 205550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,655 DEBUG Processing 91/596 atomic regions from SNP 27090 to 27691 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,756 DEBUG Processing 322/677 atomic regions from SNP 96402 to 97002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,757 DEBUG Processing 653/717 atomic regions from SNP 195616 to 196216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,831 DEBUG Processing 97/660 atomic regions from SNP 28896 to 29497 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,859 DEBUG Processing 685/723 atomic regions from SNP 205250 to 205850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,864 DEBUG Processing 92/596 atomic regions from SNP 27391 to 27992 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:31,964 DEBUG Processing 654/717 atomic regions from SNP 195916 to 196516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,996 DEBUG Processing 323/677 atomic regions from SNP 96702 to 97302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,044 DEBUG Processing 98/660 atomic regions from SNP 29197 to 29798 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,069 DEBUG Processing 93/596 atomic regions from SNP 27692 to 28293 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,082 DEBUG Processing 686/723 atomic regions from SNP 205550 to 206150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,172 DEBUG Processing 655/717 atomic regions from SNP 196216 to 196816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,242 DEBUG Processing 99/660 atomic regions from SNP 29498 to 30099 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,251 DEBUG Processing 324/677 atomic regions from SNP 97002 to 97602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,272 DEBUG Processing 94/596 atomic regions from SNP 27993 to 28594 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,301 DEBUG Processing 687/723 atomic regions from SNP 205850 to 206450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,380 DEBUG Processing 656/717 atomic regions from SNP 196516 to 197116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,444 DEBUG Processing 100/660 atomic regions from SNP 29799 to 30400 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,478 DEBUG Processing 95/596 atomic regions from SNP 28294 to 28895 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,504 DEBUG Processing 325/677 atomic regions from SNP 97302 to 97902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,522 DEBUG Processing 688/723 atomic regions from SNP 206150 to 206750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,586 DEBUG Processing 657/717 atomic regions from SNP 196816 to 197416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,641 DEBUG Processing 101/660 atomic regions from SNP 30100 to 30701 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,690 DEBUG Processing 96/596 atomic regions from SNP 28595 to 29196 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,760 DEBUG Processing 326/677 atomic regions from SNP 97602 to 98202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,763 DEBUG Processing 689/723 atomic regions from SNP 206450 to 207050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,802 DEBUG Processing 658/717 atomic regions from SNP 197116 to 197716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,876 DEBUG Processing 102/660 atomic regions from SNP 30401 to 31002 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,901 DEBUG Processing 97/596 atomic regions from SNP 28896 to 29497 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:32,992 DEBUG Processing 327/677 atomic regions from SNP 97902 to 98502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,994 DEBUG Processing 690/723 atomic regions from SNP 206750 to 207350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,011 DEBUG Processing 659/717 atomic regions from SNP 197416 to 198016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,118 DEBUG Processing 103/660 atomic regions from SNP 30702 to 31303 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,122 DEBUG Processing 98/596 atomic regions from SNP 29197 to 29798 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,218 DEBUG Processing 691/723 atomic regions from SNP 207050 to 207650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,222 DEBUG Processing 660/717 atomic regions from SNP 197716 to 198316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,223 DEBUG Processing 328/677 atomic regions from SNP 98202 to 98802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,331 DEBUG Processing 99/596 atomic regions from SNP 29498 to 30099 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,341 DEBUG Processing 104/660 atomic regions from SNP 31003 to 31604 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,430 DEBUG Processing 661/717 atomic regions from SNP 198016 to 198616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,445 DEBUG Processing 692/723 atomic regions from SNP 207350 to 207950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,459 DEBUG Processing 329/677 atomic regions from SNP 98502 to 99102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,545 DEBUG Processing 100/596 atomic regions from SNP 29799 to 30400 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,572 DEBUG Processing 105/660 atomic regions from SNP 31304 to 31905 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,645 DEBUG Processing 662/717 atomic regions from SNP 198316 to 198916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,683 DEBUG Processing 330/677 atomic regions from SNP 98802 to 99402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,692 DEBUG Processing 693/723 atomic regions from SNP 207650 to 208250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,752 DEBUG Processing 101/596 atomic regions from SNP 30100 to 30701 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:33,798 DEBUG Processing 106/660 atomic regions from SNP 31605 to 32206 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,869 DEBUG Processing 663/717 atomic regions from SNP 198616 to 199216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,913 DEBUG Processing 331/677 atomic regions from SNP 99102 to 99702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,949 DEBUG Processing 694/723 atomic regions from SNP 207950 to 208550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,963 DEBUG Processing 102/596 atomic regions from SNP 30401 to 31002 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,017 DEBUG Processing 107/660 atomic regions from SNP 31906 to 32507 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,094 DEBUG Processing 664/717 atomic regions from SNP 198916 to 199516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,170 DEBUG Processing 332/677 atomic regions from SNP 99402 to 100002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,226 DEBUG Processing 103/596 atomic regions from SNP 30702 to 31303 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,256 DEBUG Processing 695/723 atomic regions from SNP 208250 to 208850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,279 DEBUG Processing 108/660 atomic regions from SNP 32207 to 32808 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,319 DEBUG Processing 665/717 atomic regions from SNP 199216 to 199816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,423 DEBUG Processing 333/677 atomic regions from SNP 99702 to 100302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,443 DEBUG Processing 104/596 atomic regions from SNP 31003 to 31604 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,490 DEBUG Processing 109/660 atomic regions from SNP 32508 to 33109 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,522 DEBUG Processing 696/723 atomic regions from SNP 208550 to 209150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,540 DEBUG Processing 666/717 atomic regions from SNP 199516 to 200116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,660 DEBUG Processing 105/596 atomic regions from SNP 31304 to 31905 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,680 DEBUG Processing 334/677 atomic regions from SNP 100002 to 100602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,707 DEBUG Processing 110/660 atomic regions from SNP 32809 to 33410 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,768 DEBUG Processing 667/717 atomic regions from SNP 199816 to 200416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,777 DEBUG Processing 697/723 atomic regions from SNP 208850 to 209450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,896 DEBUG Processing 106/596 atomic regions from SNP 31605 to 32206 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:34,941 DEBUG Processing 111/660 atomic regions from SNP 33110 to 33711 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,953 DEBUG Processing 335/677 atomic regions from SNP 100302 to 100902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,997 DEBUG Processing 668/717 atomic regions from SNP 200116 to 200716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,049 DEBUG Processing 698/723 atomic regions from SNP 209150 to 209750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,122 DEBUG Processing 107/596 atomic regions from SNP 31906 to 32507 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,159 DEBUG Processing 112/660 atomic regions from SNP 33411 to 34012 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,192 DEBUG Processing 336/677 atomic regions from SNP 100602 to 101202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,219 DEBUG Processing 669/717 atomic regions from SNP 200416 to 201016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,313 DEBUG Processing 699/723 atomic regions from SNP 209450 to 210050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,344 DEBUG Processing 108/596 atomic regions from SNP 32207 to 32808 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,371 DEBUG Processing 113/660 atomic regions from SNP 33712 to 34313 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,436 DEBUG Processing 670/717 atomic regions from SNP 200716 to 201316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,440 DEBUG Processing 337/677 atomic regions from SNP 100902 to 101502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,575 DEBUG Processing 700/723 atomic regions from SNP 209750 to 210350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,578 DEBUG Processing 109/596 atomic regions from SNP 32508 to 33109 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:35,594 DEBUG Processing 114/660 atomic regions from SNP 34013 to 34614 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,688 DEBUG Processing 671/717 atomic regions from SNP 201016 to 201616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,764 DEBUG Processing 338/677 atomic regions from SNP 101202 to 101802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,010 DEBUG Processing 110/596 atomic regions from SNP 32809 to 33410 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,059 DEBUG Processing 701/723 atomic regions from SNP 210050 to 210650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,064 DEBUG Processing 115/660 atomic regions from SNP 34314 to 34915 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,090 DEBUG Processing 672/717 atomic regions from SNP 201316 to 201916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,108 DEBUG Processing 339/677 atomic regions from SNP 101502 to 102102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,222 DEBUG Processing 111/596 atomic regions from SNP 33110 to 33711 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,284 DEBUG Processing 116/660 atomic regions from SNP 34615 to 35216 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,322 DEBUG Processing 673/717 atomic regions from SNP 201616 to 202216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,327 DEBUG Processing 702/723 atomic regions from SNP 210350 to 210950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,346 DEBUG Processing 340/677 atomic regions from SNP 101802 to 102402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,442 DEBUG Processing 112/596 atomic regions from SNP 33411 to 34012 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,531 DEBUG Processing 117/660 atomic regions from SNP 34916 to 35517 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,597 DEBUG Processing 674/717 atomic regions from SNP 201916 to 202516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,613 DEBUG Processing 703/723 atomic regions from SNP 210650 to 211250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,702 DEBUG Processing 341/677 atomic regions from SNP 102102 to 102702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,788 DEBUG Processing 113/596 atomic regions from SNP 33712 to 34313 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:36,844 DEBUG Processing 118/660 atomic regions from SNP 35217 to 35818 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,876 DEBUG Processing 675/717 atomic regions from SNP 202216 to 202816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,937 DEBUG Processing 704/723 atomic regions from SNP 210950 to 211550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,952 DEBUG Processing 342/677 atomic regions from SNP 102402 to 103002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,012 DEBUG Processing 114/596 atomic regions from SNP 34013 to 34614 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,070 DEBUG Processing 119/660 atomic regions from SNP 35518 to 36119 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,119 DEBUG Processing 676/717 atomic regions from SNP 202516 to 203116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,186 DEBUG Processing 705/723 atomic regions from SNP 211250 to 211850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,188 DEBUG Processing 343/677 atomic regions from SNP 102702 to 103302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,231 DEBUG Processing 115/596 atomic regions from SNP 34314 to 34915 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,286 DEBUG Processing 120/660 atomic regions from SNP 35819 to 36420 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,324 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:55:37,325 DEBUG chr16: Signal quantile: 0.993. signal threshold: 18. Best RMSEA: 0.016 2025-01-31 09:55:37,378 DEBUG Processing 677/717 atomic regions from SNP 202816 to 203416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,417 DEBUG Processing 344/677 atomic regions from SNP 103002 to 103602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,442 DEBUG Processing 706/723 atomic regions from SNP 211550 to 212150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,449 DEBUG Processing 116/596 atomic regions from SNP 34615 to 35216 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,493 DEBUG Processing 121/660 atomic regions from SNP 36120 to 36721 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,633 DEBUG Processing 678/717 atomic regions from SNP 203116 to 203716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,640 DEBUG Processing 345/677 atomic regions from SNP 103302 to 103902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,669 DEBUG Processing 117/596 atomic regions from SNP 34916 to 35517 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,705 DEBUG Processing 707/723 atomic regions from SNP 211850 to 212450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,713 DEBUG Processing 122/660 atomic regions from SNP 36421 to 37022 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,878 DEBUG Processing 346/677 atomic regions from SNP 103602 to 104202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,885 DEBUG Processing 679/717 atomic regions from SNP 203416 to 204016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,897 DEBUG Processing 118/596 atomic regions from SNP 35217 to 35818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:37,924 DEBUG Processing 123/660 atomic regions from SNP 36722 to 37323 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,964 DEBUG Processing 708/723 atomic regions from SNP 212150 to 212750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,162 DEBUG Processing 347/677 atomic regions from SNP 103902 to 104502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,210 DEBUG Processing 119/596 atomic regions from SNP 35518 to 36119 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,211 DEBUG Processing 680/717 atomic regions from SNP 203716 to 204316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,217 DEBUG Processing 124/660 atomic regions from SNP 37023 to 37624 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,329 DEBUG Processing 709/723 atomic regions from SNP 212450 to 213050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,445 DEBUG Processing 348/677 atomic regions from SNP 104202 to 104802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,499 DEBUG Processing 120/596 atomic regions from SNP 35819 to 36420 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,502 DEBUG Processing 125/660 atomic regions from SNP 37324 to 37925 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,540 DEBUG Processing 681/717 atomic regions from SNP 204016 to 204616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,609 DEBUG Processing 710/723 atomic regions from SNP 212750 to 213350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,671 DEBUG Processing 349/677 atomic regions from SNP 104502 to 105102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,714 DEBUG Processing 126/660 atomic regions from SNP 37625 to 38226 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,718 DEBUG Processing 121/596 atomic regions from SNP 36120 to 36721 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,796 DEBUG Processing 682/717 atomic regions from SNP 204316 to 204916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,856 DEBUG Processing 711/723 atomic regions from SNP 213050 to 213650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,891 DEBUG Processing 350/677 atomic regions from SNP 104802 to 105402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,920 DEBUG Processing 122/596 atomic regions from SNP 36421 to 37022 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:38,938 DEBUG Processing 127/660 atomic regions from SNP 37926 to 38527 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,042 DEBUG Processing 683/717 atomic regions from SNP 204616 to 205216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,096 DEBUG Processing 712/723 atomic regions from SNP 213350 to 213950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,127 DEBUG Processing 123/596 atomic regions from SNP 36722 to 37323 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,132 DEBUG Processing 351/677 atomic regions from SNP 105102 to 105702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,162 DEBUG Processing 128/660 atomic regions from SNP 38227 to 38828 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,238 DEBUG chr16 total SNP count: 168161 2025-01-31 09:55:39,238 DEBUG chr16 length: 98207768 2025-01-31 09:55:39,238 DEBUG ----------------------------------------- 2025-01-31 09:55:39,239 INFO Processing SNPs in chr16 2025-01-31 09:55:39,284 DEBUG Processing 684/717 atomic regions from SNP 204916 to 205516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,341 DEBUG Processing 713/723 atomic regions from SNP 213650 to 214250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,343 DEBUG Processing 124/596 atomic regions from SNP 37023 to 37624 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,363 DEBUG Processing 129/660 atomic regions from SNP 38528 to 39129 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,393 DEBUG Processing 352/677 atomic regions from SNP 105402 to 106002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,410 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 168161)] 2025-01-31 09:55:39,524 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:39,529 DEBUG Processing 685/717 atomic regions from SNP 205216 to 205816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,555 DEBUG Processing 125/596 atomic regions from SNP 37324 to 37925 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,572 DEBUG Processing 714/723 atomic regions from SNP 213950 to 214550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,582 DEBUG Processing 130/660 atomic regions from SNP 38829 to 39430 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,652 DEBUG Processing 353/677 atomic regions from SNP 105702 to 106302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,770 DEBUG Processing 686/717 atomic regions from SNP 205516 to 206116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,775 DEBUG Processing 126/596 atomic regions from SNP 37625 to 38226 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:39,787 DEBUG Processing 131/660 atomic regions from SNP 39130 to 39731 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,807 DEBUG Processing 715/723 atomic regions from SNP 214250 to 214850 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,889 DEBUG Processing 354/677 atomic regions from SNP 106002 to 106602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,987 DEBUG Processing 132/660 atomic regions from SNP 39431 to 40032 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,994 DEBUG Processing 127/596 atomic regions from SNP 37926 to 38527 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,007 DEBUG Processing 687/717 atomic regions from SNP 205816 to 206416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,047 DEBUG Processing 716/723 atomic regions from SNP 214550 to 215150 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,135 DEBUG Processing 355/677 atomic regions from SNP 106302 to 106902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,187 DEBUG Processing 133/660 atomic regions from SNP 39732 to 40333 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,201 DEBUG Processing 128/596 atomic regions from SNP 38227 to 38828 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,246 DEBUG Processing 688/717 atomic regions from SNP 206116 to 206716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,271 DEBUG Processing 717/723 atomic regions from SNP 214850 to 215450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,374 DEBUG Processing 356/677 atomic regions from SNP 106602 to 107202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,388 DEBUG Processing 134/660 atomic regions from SNP 40033 to 40634 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,417 DEBUG Processing 129/596 atomic regions from SNP 38528 to 39129 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,485 DEBUG Processing 689/717 atomic regions from SNP 206416 to 207016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,525 DEBUG Processing 718/723 atomic regions from SNP 215150 to 215750 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,592 DEBUG Processing 135/660 atomic regions from SNP 40334 to 40935 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,626 DEBUG Processing 357/677 atomic regions from SNP 106902 to 107502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,634 DEBUG Processing 130/596 atomic regions from SNP 38829 to 39430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,729 DEBUG Processing 690/717 atomic regions from SNP 206716 to 207316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,782 DEBUG Processing 719/723 atomic regions from SNP 215450 to 216050 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,794 DEBUG Processing 136/660 atomic regions from SNP 40635 to 41236 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,858 DEBUG Processing 131/596 atomic regions from SNP 39130 to 39730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:40,885 DEBUG Processing 358/677 atomic regions from SNP 107202 to 107802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,962 DEBUG Processing 691/717 atomic regions from SNP 207016 to 207616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,995 DEBUG Processing 137/660 atomic regions from SNP 40936 to 41537 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,014 DEBUG Processing 720/723 atomic regions from SNP 215750 to 216350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,068 DEBUG Processing 132/596 atomic regions from SNP 39430 to 40030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,141 DEBUG Processing 359/677 atomic regions from SNP 107502 to 108102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,189 DEBUG Processing 692/717 atomic regions from SNP 207316 to 207916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,193 DEBUG Processing 138/660 atomic regions from SNP 41237 to 41838 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,240 DEBUG Processing 721/723 atomic regions from SNP 216050 to 216650 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,286 DEBUG Processing 133/596 atomic regions from SNP 39730 to 40330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,367 DEBUG Processing 360/677 atomic regions from SNP 107802 to 108402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,394 DEBUG Processing 139/660 atomic regions from SNP 41538 to 42139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,434 DEBUG Processing 693/717 atomic regions from SNP 207616 to 208216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,464 DEBUG Processing 722/723 atomic regions from SNP 216350 to 216950 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,526 DEBUG Processing 134/596 atomic regions from SNP 40030 to 40630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,594 DEBUG Processing 140/660 atomic regions from SNP 41839 to 42440 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,598 DEBUG Processing 361/677 atomic regions from SNP 108102 to 108702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,672 DEBUG Processing 694/717 atomic regions from SNP 207916 to 208516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,689 DEBUG Processing 723/723 atomic regions from SNP 216650 to 217250 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,744 DEBUG Processing 135/596 atomic regions from SNP 40330 to 40930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:41,789 DEBUG Processing 141/660 atomic regions from SNP 42140 to 42741 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,816 DEBUG Processing 362/677 atomic regions from SNP 108402 to 109002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,845 DEBUG Unique SNPs positions in subchromosome 1: 217251 2025-01-31 09:55:41,913 DEBUG Processing 695/717 atomic regions from SNP 208216 to 208816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,969 DEBUG Processing 136/596 atomic regions from SNP 40630 to 41230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,002 DEBUG Processing 142/660 atomic regions from SNP 42441 to 43042 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,055 DEBUG Processing 363/677 atomic regions from SNP 108702 to 109302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,150 DEBUG Processing 696/717 atomic regions from SNP 208516 to 209116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,179 DEBUG Processing 137/596 atomic regions from SNP 40930 to 41530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,201 DEBUG Processing 143/660 atomic regions from SNP 42742 to 43343 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,280 DEBUG Processing 364/677 atomic regions from SNP 109002 to 109602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,384 DEBUG Processing 138/596 atomic regions from SNP 41230 to 41830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,392 DEBUG Processing 697/717 atomic regions from SNP 208816 to 209416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,408 DEBUG Processing 144/660 atomic regions from SNP 43043 to 43644 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,502 DEBUG Processing 365/677 atomic regions from SNP 109302 to 109902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,594 DEBUG Processing 139/596 atomic regions from SNP 41530 to 42130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,614 DEBUG Processing 145/660 atomic regions from SNP 43344 to 43945 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,620 DEBUG Processing 698/717 atomic regions from SNP 209116 to 209716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,729 DEBUG Processing 366/677 atomic regions from SNP 109602 to 110202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,808 DEBUG Processing 140/596 atomic regions from SNP 41830 to 42430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:42,816 DEBUG Processing 146/660 atomic regions from SNP 43645 to 44246 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,835 DEBUG Processing 699/717 atomic regions from SNP 209416 to 210016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,957 DEBUG Processing 367/677 atomic regions from SNP 109902 to 110502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,020 DEBUG Processing 147/660 atomic regions from SNP 43946 to 44547 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,025 DEBUG Processing 141/596 atomic regions from SNP 42130 to 42730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,055 DEBUG Processing 700/717 atomic regions from SNP 209716 to 210316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,177 DEBUG Processing 368/677 atomic regions from SNP 110202 to 110802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,236 DEBUG Processing 142/596 atomic regions from SNP 42430 to 43030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,244 DEBUG Processing 148/660 atomic regions from SNP 44247 to 44848 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,280 DEBUG Processing 701/717 atomic regions from SNP 210016 to 210616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,397 DEBUG Processing 369/677 atomic regions from SNP 110502 to 111102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,454 DEBUG Processing 149/660 atomic regions from SNP 44548 to 45149 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,470 DEBUG Processing 143/596 atomic regions from SNP 42730 to 43330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,515 DEBUG Processing 702/717 atomic regions from SNP 210316 to 210916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,617 DEBUG Processing 370/677 atomic regions from SNP 110802 to 111402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,655 DEBUG Processing 150/660 atomic regions from SNP 44849 to 45450 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,693 DEBUG Processing 144/596 atomic regions from SNP 43030 to 43630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,745 DEBUG Processing 703/717 atomic regions from SNP 210616 to 211216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,840 DEBUG Processing 371/677 atomic regions from SNP 111102 to 111702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,857 DEBUG Processing 151/660 atomic regions from SNP 45150 to 45751 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,903 DEBUG Processing 145/596 atomic regions from SNP 43330 to 43930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:43,976 DEBUG Processing 704/717 atomic regions from SNP 210916 to 211516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,065 DEBUG Processing 372/677 atomic regions from SNP 111402 to 112002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,088 DEBUG Processing 152/660 atomic regions from SNP 45451 to 46052 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,113 DEBUG Processing 146/596 atomic regions from SNP 43630 to 44230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,188 DEBUG Processing 705/717 atomic regions from SNP 211216 to 211816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,289 DEBUG Processing 373/677 atomic regions from SNP 111702 to 112302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,322 DEBUG Processing 153/660 atomic regions from SNP 45752 to 46353 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,324 DEBUG Processing 147/596 atomic regions from SNP 43930 to 44530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,420 DEBUG Processing 706/717 atomic regions from SNP 211516 to 212116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,515 DEBUG Processing 374/677 atomic regions from SNP 112002 to 112602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,539 DEBUG Processing 148/596 atomic regions from SNP 44230 to 44830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,542 DEBUG Processing 154/660 atomic regions from SNP 46053 to 46654 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,668 DEBUG Processing 707/717 atomic regions from SNP 211816 to 212416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,737 DEBUG Processing 375/677 atomic regions from SNP 112302 to 112902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,751 DEBUG Processing 149/596 atomic regions from SNP 44530 to 45130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,770 DEBUG Processing 155/660 atomic regions from SNP 46354 to 46955 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,908 DEBUG Processing 708/717 atomic regions from SNP 212116 to 212716 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,963 DEBUG Processing 376/677 atomic regions from SNP 112602 to 113202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,968 DEBUG Processing 150/596 atomic regions from SNP 44830 to 45430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:44,997 DEBUG Processing 156/660 atomic regions from SNP 46655 to 47256 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,164 DEBUG Processing 709/717 atomic regions from SNP 212416 to 213016 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,191 DEBUG Processing 151/596 atomic regions from SNP 45130 to 45730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,198 DEBUG Processing 377/677 atomic regions from SNP 112902 to 113502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,203 DEBUG Processing 157/660 atomic regions from SNP 46956 to 47557 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,409 DEBUG Processing 152/596 atomic regions from SNP 45430 to 46030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,410 DEBUG Processing 158/660 atomic regions from SNP 47257 to 47858 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,418 DEBUG Processing 710/717 atomic regions from SNP 212716 to 213316 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,439 DEBUG Processing 378/677 atomic regions from SNP 113202 to 113802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,616 DEBUG Processing 159/660 atomic regions from SNP 47558 to 48159 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,631 DEBUG Processing 153/596 atomic regions from SNP 45730 to 46330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,671 DEBUG Processing 711/717 atomic regions from SNP 213016 to 213616 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,703 DEBUG Processing 379/677 atomic regions from SNP 113502 to 114102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,827 DEBUG Processing 160/660 atomic regions from SNP 47859 to 48460 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,848 DEBUG Processing 154/596 atomic regions from SNP 46030 to 46630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:45,926 DEBUG Processing 712/717 atomic regions from SNP 213316 to 213916 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,953 DEBUG Processing 380/677 atomic regions from SNP 113802 to 114402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,036 DEBUG Processing 161/660 atomic regions from SNP 48160 to 48761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,061 DEBUG Processing 155/596 atomic regions from SNP 46330 to 46930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,168 DEBUG Processing 713/717 atomic regions from SNP 213616 to 214216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,181 DEBUG Processing 381/677 atomic regions from SNP 114102 to 114702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,244 DEBUG Processing 162/660 atomic regions from SNP 48461 to 49062 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,278 DEBUG Processing 156/596 atomic regions from SNP 46630 to 47230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,411 DEBUG Processing 714/717 atomic regions from SNP 213916 to 214516 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,421 DEBUG Processing 382/677 atomic regions from SNP 114402 to 115002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,465 DEBUG Processing 163/660 atomic regions from SNP 48762 to 49363 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,502 DEBUG Processing 157/596 atomic regions from SNP 46930 to 47530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,642 DEBUG Processing 715/717 atomic regions from SNP 214216 to 214816 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,647 DEBUG Processing 383/677 atomic regions from SNP 114702 to 115302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,668 DEBUG Processing 164/660 atomic regions from SNP 49063 to 49664 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,720 DEBUG Processing 158/596 atomic regions from SNP 47230 to 47830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:46,867 DEBUG Processing 716/717 atomic regions from SNP 214516 to 215116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,873 DEBUG Processing 165/660 atomic regions from SNP 49364 to 49965 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,878 DEBUG Processing 384/677 atomic regions from SNP 115002 to 115602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,939 DEBUG Processing 159/596 atomic regions from SNP 47530 to 48130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,117 DEBUG Processing 166/660 atomic regions from SNP 49665 to 50266 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,125 DEBUG Processing 717/717 atomic regions from SNP 214816 to 215416 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,135 DEBUG Processing 385/677 atomic regions from SNP 115302 to 115902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,180 DEBUG Processing 160/596 atomic regions from SNP 47830 to 48430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,247 DEBUG Unique SNPs positions in subchromosome 1: 215417 2025-01-31 09:55:47,335 DEBUG Processing 167/660 atomic regions from SNP 49966 to 50567 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,390 DEBUG Processing 386/677 atomic regions from SNP 115602 to 116202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,437 DEBUG Processing 161/596 atomic regions from SNP 48130 to 48730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,585 DEBUG Processing 168/660 atomic regions from SNP 50267 to 50868 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,657 DEBUG Processing 387/677 atomic regions from SNP 115902 to 116502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,693 DEBUG Processing 162/596 atomic regions from SNP 48430 to 49030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:47,796 DEBUG Processing 169/660 atomic regions from SNP 50568 to 51169 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,882 DEBUG Processing 388/677 atomic regions from SNP 116202 to 116802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,910 DEBUG Processing 163/596 atomic regions from SNP 48730 to 49330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,004 DEBUG Processing 170/660 atomic regions from SNP 50869 to 51470 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,105 DEBUG Processing 389/677 atomic regions from SNP 116502 to 117102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,120 DEBUG Processing 164/596 atomic regions from SNP 49030 to 49630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,205 DEBUG Processing 171/660 atomic regions from SNP 51170 to 51771 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,321 DEBUG Processing 390/677 atomic regions from SNP 116802 to 117402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,325 DEBUG Processing 165/596 atomic regions from SNP 49330 to 49930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,408 DEBUG Processing 172/660 atomic regions from SNP 51471 to 52072 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,535 DEBUG Processing 166/596 atomic regions from SNP 49630 to 50230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,541 DEBUG Processing 391/677 atomic regions from SNP 117102 to 117702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,620 DEBUG Processing 173/660 atomic regions from SNP 51772 to 52373 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,774 DEBUG Processing 392/677 atomic regions from SNP 117402 to 118002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,776 DEBUG Processing 167/596 atomic regions from SNP 49930 to 50530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:48,837 DEBUG Processing 174/660 atomic regions from SNP 52073 to 52674 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,992 DEBUG Processing 168/596 atomic regions from SNP 50230 to 50830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,005 DEBUG Processing 393/677 atomic regions from SNP 117702 to 118302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,052 DEBUG Processing 175/660 atomic regions from SNP 52374 to 52975 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,230 DEBUG Processing 169/596 atomic regions from SNP 50530 to 51130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,263 DEBUG Processing 394/677 atomic regions from SNP 118002 to 118602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,307 DEBUG Processing 176/660 atomic regions from SNP 52675 to 53276 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,460 DEBUG Processing 170/596 atomic regions from SNP 50830 to 51430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,517 DEBUG Processing 395/677 atomic regions from SNP 118302 to 118902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,527 DEBUG Processing 177/660 atomic regions from SNP 52976 to 53577 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,688 DEBUG Processing 171/596 atomic regions from SNP 51130 to 51730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,749 DEBUG Processing 178/660 atomic regions from SNP 53277 to 53878 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,793 DEBUG Processing 396/677 atomic regions from SNP 118602 to 119202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,915 DEBUG Processing 172/596 atomic regions from SNP 51430 to 52030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:49,996 DEBUG Processing 179/660 atomic regions from SNP 53578 to 54179 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,076 DEBUG Processing 397/677 atomic regions from SNP 118902 to 119502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,276 DEBUG Processing 173/596 atomic regions from SNP 51730 to 52330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,330 DEBUG Processing 180/660 atomic regions from SNP 53879 to 54480 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,431 DEBUG Processing 398/677 atomic regions from SNP 119202 to 119802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,707 DEBUG Processing 174/596 atomic regions from SNP 52030 to 52630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:50,709 DEBUG Processing 181/660 atomic regions from SNP 54180 to 54781 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,871 DEBUG Processing 399/677 atomic regions from SNP 119502 to 120102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,072 DEBUG Processing 175/596 atomic regions from SNP 52330 to 52930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,130 DEBUG Processing 182/660 atomic regions from SNP 54481 to 55082 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,312 DEBUG Processing 400/677 atomic regions from SNP 119802 to 120402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,387 DEBUG Processing 176/596 atomic regions from SNP 52630 to 53230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,395 DEBUG Processing 183/660 atomic regions from SNP 54782 to 55383 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,611 DEBUG Processing 401/677 atomic regions from SNP 120102 to 120702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,638 DEBUG Processing 184/660 atomic regions from SNP 55083 to 55684 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,639 DEBUG Processing 177/596 atomic regions from SNP 52930 to 53530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,896 DEBUG Processing 178/596 atomic regions from SNP 53230 to 53830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:51,898 DEBUG Processing 185/660 atomic regions from SNP 55384 to 55985 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,901 DEBUG Processing 402/677 atomic regions from SNP 120402 to 121002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,193 DEBUG Processing 186/660 atomic regions from SNP 55685 to 56286 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,212 DEBUG Processing 179/596 atomic regions from SNP 53530 to 54130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,273 DEBUG Processing 403/677 atomic regions from SNP 120702 to 121302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,533 DEBUG Processing 187/660 atomic regions from SNP 55986 to 56587 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,588 DEBUG Processing 180/596 atomic regions from SNP 53830 to 54430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:52,717 DEBUG Processing 404/677 atomic regions from SNP 121002 to 121602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,966 DEBUG Processing 188/660 atomic regions from SNP 56287 to 56888 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,025 DEBUG Subchromosome time: 212.35365528101102, subchromosome SNPs: 217251 2025-01-31 09:55:53,025 DEBUG Estimated BADs: [0.55, 4.43, 0.44, 2.22, 1.11, 0.44, 11.08, 2.22, 0.74, 2.22, 0.37, 2.22, 0.32, 2.22, 6.65, 2.22, 4.43, 2.22, 1.11, 0.37, 2.22, 6.65, 2.22, 4.43] SNP counts: [7451, 876, 8688, 3430, 3997, 4630, 2885, 6409, 9859, 3512, 2100, 6311, 3583, 5891, 5228, 16006, 23560, 21682, 19747, 6001, 22261, 8356, 15568, 9220] SNP IDs counts: [7451, 876, 8688, 3430, 3997, 4630, 2885, 6409, 9859, 3512, 2100, 6311, 3583, 5891, 5228, 16006, 23560, 21682, 19747, 6001, 22261, 8356, 15568, 9220] Critical gap: 598704bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 7.56Mbp, 8.05Mbp, 13.30Mbp, 15.23Mbp, 17.52Mbp, 20.49Mbp, 22.01Mbp, 25.61Mbp, 31.03Mbp, 32.89Mbp, 34.13Mbp, 37.72Mbp, 39.96Mbp, 43.10Mbp, 45.84Mbp, 54.48Mbp, 66.94Mbp, 78.79Mbp, 90.56Mbp, 94.16Mbp, 106.17Mbp, 110.82Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:55:53,025 DEBUG chr9 time: 212.35442217602395 s 2025-01-31 09:55:53,027 DEBUG Processing 181/596 atomic regions from SNP 54130 to 54730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,161 DEBUG Processing 405/677 atomic regions from SNP 121302 to 121902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,269 DEBUG chr9: Fitting background model for 24 segments 2025-01-31 09:55:53,381 DEBUG Processing 189/660 atomic regions from SNP 56588 to 57189 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,510 DEBUG Processing 182/596 atomic regions from SNP 54430 to 55030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,589 DEBUG Processing 406/677 atomic regions from SNP 121602 to 122202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,766 DEBUG Processing 190/660 atomic regions from SNP 56889 to 57490 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,816 DEBUG Processing 183/596 atomic regions from SNP 54730 to 55330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:53,899 DEBUG Processing 407/677 atomic regions from SNP 121902 to 122502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,975 DEBUG Processing 191/660 atomic regions from SNP 57190 to 57791 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,047 DEBUG Processing 184/596 atomic regions from SNP 55030 to 55630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,150 DEBUG Processing 408/677 atomic regions from SNP 122202 to 122802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,194 DEBUG Processing 192/660 atomic regions from SNP 57491 to 58092 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,278 DEBUG Processing 185/596 atomic regions from SNP 55330 to 55930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,382 DEBUG Processing 409/677 atomic regions from SNP 122502 to 123102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,403 DEBUG Processing 193/660 atomic regions from SNP 57792 to 58393 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,504 DEBUG Processing 186/596 atomic regions from SNP 55630 to 56230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,712 DEBUG Processing 194/660 atomic regions from SNP 58093 to 58694 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,715 DEBUG Processing 410/677 atomic regions from SNP 122802 to 123402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,820 DEBUG Processing 187/596 atomic regions from SNP 55930 to 56530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:54,924 DEBUG Processing 195/660 atomic regions from SNP 58394 to 58995 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,957 DEBUG Processing 411/677 atomic regions from SNP 123102 to 123702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,072 DEBUG Processing 188/596 atomic regions from SNP 56230 to 56830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,125 DEBUG Processing 196/660 atomic regions from SNP 58695 to 59296 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,190 DEBUG Processing 412/677 atomic regions from SNP 123402 to 124002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,307 DEBUG Processing 189/596 atomic regions from SNP 56530 to 57130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,339 DEBUG Processing 197/660 atomic regions from SNP 58996 to 59597 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,472 DEBUG Processing 413/677 atomic regions from SNP 123702 to 124302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,566 DEBUG Processing 198/660 atomic regions from SNP 59297 to 59898 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,578 DEBUG Processing 190/596 atomic regions from SNP 56830 to 57430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,705 DEBUG Processing 414/677 atomic regions from SNP 124002 to 124602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,779 DEBUG Processing 199/660 atomic regions from SNP 59598 to 60199 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,802 DEBUG Processing 191/596 atomic regions from SNP 57130 to 57730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:55,920 DEBUG Processing 415/677 atomic regions from SNP 124302 to 124902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,978 DEBUG Processing 200/660 atomic regions from SNP 59899 to 60500 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,012 DEBUG Processing 192/596 atomic regions from SNP 57430 to 58030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,140 DEBUG Processing 416/677 atomic regions from SNP 124602 to 125202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,176 DEBUG Processing 201/660 atomic regions from SNP 60200 to 60801 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,215 DEBUG Processing 193/596 atomic regions from SNP 57730 to 58330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,372 DEBUG Processing 417/677 atomic regions from SNP 124902 to 125502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,378 DEBUG Processing 202/660 atomic regions from SNP 60501 to 61102 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,441 DEBUG Processing 194/596 atomic regions from SNP 58030 to 58630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,580 DEBUG Processing 203/660 atomic regions from SNP 60802 to 61403 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,595 DEBUG Processing 418/677 atomic regions from SNP 125202 to 125802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,667 DEBUG Processing 195/596 atomic regions from SNP 58330 to 58930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,774 DEBUG Processing 204/660 atomic regions from SNP 61103 to 61704 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,813 DEBUG Processing 419/677 atomic regions from SNP 125502 to 126102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,901 DEBUG Processing 196/596 atomic regions from SNP 58630 to 59230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:56,966 DEBUG Processing 205/660 atomic regions from SNP 61404 to 62005 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,026 DEBUG Processing 420/677 atomic regions from SNP 125802 to 126402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,144 DEBUG Processing 197/596 atomic regions from SNP 58930 to 59530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,163 DEBUG Processing 206/660 atomic regions from SNP 61705 to 62306 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,240 DEBUG Processing 421/677 atomic regions from SNP 126102 to 126702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,361 DEBUG Processing 207/660 atomic regions from SNP 62006 to 62607 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,371 DEBUG Processing 198/596 atomic regions from SNP 59230 to 59830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,455 DEBUG Processing 422/677 atomic regions from SNP 126402 to 127002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,558 DEBUG Processing 208/660 atomic regions from SNP 62307 to 62908 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,573 DEBUG Processing 199/596 atomic regions from SNP 59530 to 60130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,675 DEBUG Processing 423/677 atomic regions from SNP 126702 to 127302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,754 DEBUG Processing 209/660 atomic regions from SNP 62608 to 63209 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,776 DEBUG Processing 200/596 atomic regions from SNP 59830 to 60430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:57,906 DEBUG Processing 424/677 atomic regions from SNP 127002 to 127602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,955 DEBUG Processing 210/660 atomic regions from SNP 62909 to 63510 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,981 DEBUG Processing 201/596 atomic regions from SNP 60130 to 60730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,130 DEBUG Processing 425/677 atomic regions from SNP 127302 to 127902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,159 DEBUG Processing 211/660 atomic regions from SNP 63210 to 63811 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,187 DEBUG Processing 202/596 atomic regions from SNP 60430 to 61030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,357 DEBUG Processing 426/677 atomic regions from SNP 127602 to 128202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,364 DEBUG Processing 212/660 atomic regions from SNP 63511 to 64112 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,400 DEBUG Processing 203/596 atomic regions from SNP 60730 to 61330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,567 DEBUG Processing 213/660 atomic regions from SNP 63812 to 64413 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,585 DEBUG Processing 427/677 atomic regions from SNP 127902 to 128502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,615 DEBUG Processing 204/596 atomic regions from SNP 61030 to 61630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,769 DEBUG Processing 214/660 atomic regions from SNP 64113 to 64714 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,808 DEBUG Processing 428/677 atomic regions from SNP 128202 to 128802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,828 DEBUG Processing 205/596 atomic regions from SNP 61330 to 61930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:58,969 DEBUG Processing 215/660 atomic regions from SNP 64414 to 65015 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,025 DEBUG Processing 429/677 atomic regions from SNP 128502 to 129102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,047 DEBUG Processing 206/596 atomic regions from SNP 61630 to 62230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,170 DEBUG Processing 216/660 atomic regions from SNP 64715 to 65316 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,270 DEBUG Processing 430/677 atomic regions from SNP 128802 to 129402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,285 DEBUG Processing 207/596 atomic regions from SNP 61930 to 62530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,390 DEBUG Processing 217/660 atomic regions from SNP 65016 to 65617 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,536 DEBUG Processing 431/677 atomic regions from SNP 129102 to 129702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,540 DEBUG Processing 208/596 atomic regions from SNP 62230 to 62830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,590 DEBUG Processing 218/660 atomic regions from SNP 65317 to 65918 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,748 DEBUG Processing 432/677 atomic regions from SNP 129402 to 130002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,757 DEBUG Processing 209/596 atomic regions from SNP 62530 to 63130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,786 DEBUG Processing 219/660 atomic regions from SNP 65618 to 66219 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,962 DEBUG Processing 210/596 atomic regions from SNP 62830 to 63430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:55:59,964 DEBUG Processing 433/677 atomic regions from SNP 129702 to 130302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,983 DEBUG Processing 220/660 atomic regions from SNP 65919 to 66520 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,171 DEBUG Processing 211/596 atomic regions from SNP 63130 to 63730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,181 DEBUG Processing 221/660 atomic regions from SNP 66220 to 66821 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,183 DEBUG Processing 434/677 atomic regions from SNP 130002 to 130602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,377 DEBUG Processing 222/660 atomic regions from SNP 66521 to 67122 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,378 DEBUG Processing 212/596 atomic regions from SNP 63430 to 64030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,398 DEBUG Processing 435/677 atomic regions from SNP 130302 to 130902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,576 DEBUG Processing 223/660 atomic regions from SNP 66822 to 67423 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,588 DEBUG Processing 213/596 atomic regions from SNP 63730 to 64330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,618 DEBUG Processing 436/677 atomic regions from SNP 130602 to 131202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,663 DEBUG Segmenting atomic regions: 2025-01-31 09:56:00,735 DEBUG Processing 1/559 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,771 DEBUG Processing 224/660 atomic regions from SNP 67123 to 67724 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,806 DEBUG Processing 214/596 atomic regions from SNP 64030 to 64630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:00,852 DEBUG Processing 437/677 atomic regions from SNP 130902 to 131502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,926 DEBUG Processing 2/559 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:00,973 DEBUG Processing 225/660 atomic regions from SNP 67424 to 68025 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,028 DEBUG Processing 215/596 atomic regions from SNP 64330 to 64930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,077 DEBUG Processing 438/677 atomic regions from SNP 131202 to 131802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,117 DEBUG Processing 3/559 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,184 DEBUG Processing 226/660 atomic regions from SNP 67725 to 68326 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,249 DEBUG Processing 216/596 atomic regions from SNP 64630 to 65230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,327 DEBUG Processing 439/677 atomic regions from SNP 131502 to 132102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,377 DEBUG Processing 4/559 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,456 DEBUG Processing 227/660 atomic regions from SNP 68026 to 68627 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,530 DEBUG Processing 217/596 atomic regions from SNP 64930 to 65530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,567 DEBUG Processing 440/677 atomic regions from SNP 131802 to 132402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,602 DEBUG Processing 5/559 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,650 DEBUG Processing 228/660 atomic regions from SNP 68327 to 68928 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,738 DEBUG Processing 218/596 atomic regions from SNP 65230 to 65830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:01,789 DEBUG Processing 441/677 atomic regions from SNP 132102 to 132702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,794 DEBUG Processing 6/559 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:01,846 DEBUG Processing 229/660 atomic regions from SNP 68628 to 69229 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,945 DEBUG Processing 219/596 atomic regions from SNP 65530 to 66130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,001 DEBUG Processing 7/559 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,008 DEBUG Processing 442/677 atomic regions from SNP 132402 to 133002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,042 DEBUG Processing 230/660 atomic regions from SNP 68929 to 69530 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,148 DEBUG Processing 220/596 atomic regions from SNP 65830 to 66430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,220 DEBUG Processing 8/559 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,224 DEBUG Processing 443/677 atomic regions from SNP 132702 to 133302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,240 DEBUG Processing 231/660 atomic regions from SNP 69230 to 69831 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,349 DEBUG Processing 221/596 atomic regions from SNP 66130 to 66730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,433 DEBUG Processing 9/559 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,441 DEBUG Processing 232/660 atomic regions from SNP 69531 to 70132 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,443 DEBUG Processing 444/677 atomic regions from SNP 133002 to 133602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,555 DEBUG Processing 222/596 atomic regions from SNP 66430 to 67030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,649 DEBUG Processing 233/660 atomic regions from SNP 69832 to 70433 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,661 DEBUG Processing 10/559 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,688 DEBUG Processing 445/677 atomic regions from SNP 133302 to 133902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,760 DEBUG Processing 223/596 atomic regions from SNP 66730 to 67330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:02,849 DEBUG Processing 234/660 atomic regions from SNP 70133 to 70734 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,883 DEBUG Processing 11/559 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:02,929 DEBUG Processing 446/677 atomic regions from SNP 133602 to 134202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,969 DEBUG Processing 224/596 atomic regions from SNP 67030 to 67630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,051 DEBUG Processing 235/660 atomic regions from SNP 70434 to 71035 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,102 DEBUG Processing 12/559 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,152 DEBUG Processing 447/677 atomic regions from SNP 133902 to 134502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,176 DEBUG Processing 225/596 atomic regions from SNP 67330 to 67930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,250 DEBUG Processing 236/660 atomic regions from SNP 70735 to 71336 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,295 DEBUG Processing 13/559 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,368 DEBUG Processing 448/677 atomic regions from SNP 134202 to 134802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,386 DEBUG Processing 226/596 atomic regions from SNP 67630 to 68230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,456 DEBUG Processing 237/660 atomic regions from SNP 71036 to 71637 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,489 DEBUG Processing 14/559 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,648 DEBUG Processing 227/596 atomic regions from SNP 67930 to 68530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,664 DEBUG Processing 449/677 atomic regions from SNP 134502 to 135102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,700 DEBUG Processing 15/559 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,702 DEBUG Processing 238/660 atomic regions from SNP 71337 to 71938 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,878 DEBUG Processing 228/596 atomic regions from SNP 68230 to 68830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:03,908 DEBUG Processing 16/559 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:03,922 DEBUG Processing 239/660 atomic regions from SNP 71638 to 72239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,927 DEBUG Processing 450/677 atomic regions from SNP 134802 to 135402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,081 DEBUG Processing 229/596 atomic regions from SNP 68530 to 69130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,095 DEBUG Processing 17/559 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,125 DEBUG Processing 240/660 atomic regions from SNP 71939 to 72540 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,185 DEBUG Processing 451/677 atomic regions from SNP 135102 to 135702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,278 DEBUG Processing 18/559 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,284 DEBUG Processing 230/596 atomic regions from SNP 68830 to 69430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,324 DEBUG Processing 241/660 atomic regions from SNP 72240 to 72841 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,407 DEBUG Processing 452/677 atomic regions from SNP 135402 to 136002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,459 DEBUG Processing 19/559 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,491 DEBUG Processing 231/596 atomic regions from SNP 69130 to 69730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,521 DEBUG Processing 242/660 atomic regions from SNP 72541 to 73142 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,618 DEBUG Processing 453/677 atomic regions from SNP 135702 to 136302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,643 DEBUG Processing 20/559 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,701 DEBUG Processing 232/596 atomic regions from SNP 69430 to 70030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,718 DEBUG Processing 243/660 atomic regions from SNP 72842 to 73443 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,822 DEBUG Processing 21/559 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:04,825 DEBUG Processing 454/677 atomic regions from SNP 136002 to 136602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,913 DEBUG Processing 233/596 atomic regions from SNP 69730 to 70330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:04,917 DEBUG Processing 244/660 atomic regions from SNP 73143 to 73744 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,000 DEBUG Processing 22/559 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,031 DEBUG Processing 455/677 atomic regions from SNP 136302 to 136902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,113 DEBUG Processing 245/660 atomic regions from SNP 73444 to 74045 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,124 DEBUG Processing 234/596 atomic regions from SNP 70030 to 70630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,180 DEBUG Processing 23/559 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,239 DEBUG Processing 456/677 atomic regions from SNP 136602 to 137202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,306 DEBUG Processing 246/660 atomic regions from SNP 73745 to 74346 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,331 DEBUG Processing 235/596 atomic regions from SNP 70330 to 70930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,362 DEBUG Processing 24/559 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,452 DEBUG Processing 457/677 atomic regions from SNP 136902 to 137502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,501 DEBUG Processing 247/660 atomic regions from SNP 74046 to 74647 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,531 DEBUG Processing 236/596 atomic regions from SNP 70630 to 71230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,542 DEBUG Processing 25/559 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,669 DEBUG Processing 458/677 atomic regions from SNP 137202 to 137802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,695 DEBUG Processing 248/660 atomic regions from SNP 74347 to 74948 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,719 DEBUG Processing 26/559 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,736 DEBUG Processing 237/596 atomic regions from SNP 70930 to 71530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:05,891 DEBUG Processing 459/677 atomic regions from SNP 137502 to 138102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,895 DEBUG Processing 249/660 atomic regions from SNP 74648 to 75249 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,903 DEBUG Processing 27/559 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:05,943 DEBUG Processing 238/596 atomic regions from SNP 71230 to 71830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,092 DEBUG Processing 28/559 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,099 DEBUG Processing 250/660 atomic regions from SNP 74949 to 75550 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,117 DEBUG Processing 460/677 atomic regions from SNP 137802 to 138402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,157 DEBUG Processing 239/596 atomic regions from SNP 71530 to 72130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,274 DEBUG Processing 29/559 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,297 DEBUG Processing 251/660 atomic regions from SNP 75250 to 75851 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,339 DEBUG Processing 461/677 atomic regions from SNP 138102 to 138702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,367 DEBUG Processing 240/596 atomic regions from SNP 71830 to 72430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,456 DEBUG Processing 30/559 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,498 DEBUG Processing 252/660 atomic regions from SNP 75551 to 76152 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,580 DEBUG Processing 241/596 atomic regions from SNP 72130 to 72730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,583 DEBUG Processing 462/677 atomic regions from SNP 138402 to 139002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,640 DEBUG Processing 31/559 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,697 DEBUG Processing 253/660 atomic regions from SNP 75852 to 76453 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,798 DEBUG Processing 242/596 atomic regions from SNP 72430 to 73030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:06,836 DEBUG Processing 463/677 atomic regions from SNP 138702 to 139302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,848 DEBUG Processing 32/559 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:06,897 DEBUG Processing 254/660 atomic regions from SNP 76153 to 76754 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,014 DEBUG Processing 243/596 atomic regions from SNP 72730 to 73330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,063 DEBUG Processing 33/559 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,067 DEBUG Processing 464/677 atomic regions from SNP 139002 to 139602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,098 DEBUG Processing 255/660 atomic regions from SNP 76454 to 77055 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,229 DEBUG Processing 244/596 atomic regions from SNP 73030 to 73630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,273 DEBUG Processing 34/559 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,299 DEBUG Processing 465/677 atomic regions from SNP 139302 to 139902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,302 DEBUG Processing 256/660 atomic regions from SNP 76755 to 77356 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,440 DEBUG Processing 245/596 atomic regions from SNP 73330 to 73930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,455 DEBUG Processing 35/559 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,503 DEBUG Processing 257/660 atomic regions from SNP 77056 to 77657 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,526 DEBUG Processing 466/677 atomic regions from SNP 139602 to 140202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,639 DEBUG Processing 36/559 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,653 DEBUG Processing 246/596 atomic regions from SNP 73630 to 74230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,704 DEBUG Processing 258/660 atomic regions from SNP 77357 to 77958 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,751 DEBUG Processing 467/677 atomic regions from SNP 139902 to 140502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,829 DEBUG Processing 37/559 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:07,871 DEBUG Processing 247/596 atomic regions from SNP 73930 to 74530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:07,929 DEBUG Processing 259/660 atomic regions from SNP 77658 to 78259 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,977 DEBUG Processing 468/677 atomic regions from SNP 140202 to 140802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,020 DEBUG Processing 38/559 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,097 DEBUG Processing 248/596 atomic regions from SNP 74230 to 74830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,174 DEBUG Processing 260/660 atomic regions from SNP 77959 to 78560 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,198 DEBUG Processing 469/677 atomic regions from SNP 140502 to 141102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,209 DEBUG Processing 39/559 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,313 DEBUG Processing 249/596 atomic regions from SNP 74530 to 75130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,395 DEBUG Processing 40/559 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,402 DEBUG Processing 261/660 atomic regions from SNP 78260 to 78861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,417 DEBUG Processing 470/677 atomic regions from SNP 140802 to 141402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,532 DEBUG Processing 250/596 atomic regions from SNP 74830 to 75430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,580 DEBUG Processing 41/559 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,608 DEBUG Processing 262/660 atomic regions from SNP 78561 to 79161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,639 DEBUG Processing 471/677 atomic regions from SNP 141102 to 141702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,752 DEBUG Processing 251/596 atomic regions from SNP 75130 to 75730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:08,763 DEBUG Processing 42/559 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,809 DEBUG Processing 263/660 atomic regions from SNP 78861 to 79461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,862 DEBUG Processing 472/677 atomic regions from SNP 141402 to 142002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,951 DEBUG Processing 43/559 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:08,975 DEBUG Processing 252/596 atomic regions from SNP 75430 to 76030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,013 DEBUG Processing 264/660 atomic regions from SNP 79161 to 79761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,086 DEBUG Processing 473/677 atomic regions from SNP 141702 to 142302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,161 DEBUG Processing 44/559 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,200 DEBUG Processing 253/596 atomic regions from SNP 75730 to 76330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,229 DEBUG Processing 265/660 atomic regions from SNP 79461 to 80061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,314 DEBUG Processing 474/677 atomic regions from SNP 142002 to 142602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,371 DEBUG Processing 45/559 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,420 DEBUG Processing 254/596 atomic regions from SNP 76030 to 76630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,431 DEBUG Processing 266/660 atomic regions from SNP 79761 to 80361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,536 DEBUG Processing 475/677 atomic regions from SNP 142302 to 142902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,588 DEBUG Processing 46/559 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,631 DEBUG Processing 267/660 atomic regions from SNP 80061 to 80661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,635 DEBUG Processing 255/596 atomic regions from SNP 76330 to 76930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:09,762 DEBUG Processing 476/677 atomic regions from SNP 142602 to 143202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,816 DEBUG Processing 47/559 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:09,853 DEBUG Processing 268/660 atomic regions from SNP 80361 to 80961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,868 DEBUG Processing 256/596 atomic regions from SNP 76630 to 77230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,455 DEBUG Processing 477/677 atomic regions from SNP 142902 to 143502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,503 DEBUG Processing 257/596 atomic regions from SNP 76930 to 77530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,509 DEBUG Processing 269/660 atomic regions from SNP 80661 to 81261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,517 DEBUG Processing 48/559 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,698 DEBUG Processing 478/677 atomic regions from SNP 143202 to 143802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,763 DEBUG Processing 270/660 atomic regions from SNP 80961 to 81561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,788 DEBUG Processing 258/596 atomic regions from SNP 77230 to 77830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:10,790 DEBUG Processing 49/559 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:10,991 DEBUG Processing 479/677 atomic regions from SNP 143502 to 144102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,140 DEBUG Processing 271/660 atomic regions from SNP 81261 to 81861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,208 DEBUG Processing 50/559 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,230 DEBUG Processing 259/596 atomic regions from SNP 77530 to 78130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,317 DEBUG Processing 480/677 atomic regions from SNP 143802 to 144402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,339 DEBUG Processing 272/660 atomic regions from SNP 81561 to 82161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,400 DEBUG Processing 51/559 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,471 DEBUG Processing 260/596 atomic regions from SNP 77830 to 78430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,630 DEBUG Processing 273/660 atomic regions from SNP 81861 to 82461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,637 DEBUG Processing 481/677 atomic regions from SNP 144102 to 144702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,679 DEBUG Processing 52/559 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,703 DEBUG Processing 261/596 atomic regions from SNP 78130 to 78730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:11,837 DEBUG Processing 274/660 atomic regions from SNP 82161 to 82761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,871 DEBUG Processing 53/559 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:11,873 DEBUG Processing 482/677 atomic regions from SNP 144402 to 145002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,924 DEBUG Processing 262/596 atomic regions from SNP 78430 to 79030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,063 DEBUG Processing 275/660 atomic regions from SNP 82461 to 83061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,065 DEBUG Processing 54/559 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,108 DEBUG Processing 483/677 atomic regions from SNP 144702 to 145302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,143 DEBUG Processing 263/596 atomic regions from SNP 78730 to 79330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,251 DEBUG Processing 55/559 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,263 DEBUG Processing 276/660 atomic regions from SNP 82761 to 83361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,342 DEBUG Processing 484/677 atomic regions from SNP 145002 to 145602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,369 DEBUG Processing 264/596 atomic regions from SNP 79030 to 79630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,441 DEBUG Processing 56/559 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,467 DEBUG Processing 277/660 atomic regions from SNP 83061 to 83661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,576 DEBUG Processing 485/677 atomic regions from SNP 145302 to 145902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,594 DEBUG Processing 265/596 atomic regions from SNP 79330 to 79930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,637 DEBUG Processing 57/559 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,697 DEBUG Processing 278/660 atomic regions from SNP 83361 to 83961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,812 DEBUG Processing 486/677 atomic regions from SNP 145602 to 146202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,823 DEBUG Processing 266/596 atomic regions from SNP 79630 to 80230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:12,829 DEBUG Processing 58/559 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:12,915 DEBUG Processing 279/660 atomic regions from SNP 83661 to 84261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,021 DEBUG Processing 59/559 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,055 DEBUG Processing 487/677 atomic regions from SNP 145902 to 146502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,055 DEBUG Processing 267/596 atomic regions from SNP 79930 to 80530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,146 DEBUG Processing 280/660 atomic regions from SNP 83961 to 84561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,227 DEBUG Processing 60/559 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,277 DEBUG Processing 268/596 atomic regions from SNP 80230 to 80830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,285 DEBUG Processing 488/677 atomic regions from SNP 146202 to 146802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,369 DEBUG Processing 281/660 atomic regions from SNP 84261 to 84861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,428 DEBUG Processing 61/559 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,489 DEBUG Processing 269/596 atomic regions from SNP 80530 to 81130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,507 DEBUG Processing 489/677 atomic regions from SNP 146502 to 147102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,593 DEBUG Processing 282/660 atomic regions from SNP 84561 to 85161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,647 DEBUG Processing 62/559 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,705 DEBUG Processing 270/596 atomic regions from SNP 80830 to 81430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,733 DEBUG Processing 490/677 atomic regions from SNP 146802 to 147402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,799 DEBUG Processing 283/660 atomic regions from SNP 84861 to 85461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,855 DEBUG Processing 63/559 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:13,920 DEBUG Processing 271/596 atomic regions from SNP 81130 to 81730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:13,958 DEBUG Processing 491/677 atomic regions from SNP 147102 to 147702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,999 DEBUG Processing 284/660 atomic regions from SNP 85161 to 85761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,067 DEBUG Processing 64/559 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,101 DEBUG Subchromosome time: 219.981409488013, subchromosome SNPs: 215417 2025-01-31 09:56:14,101 DEBUG Estimated BADs: [26.77, 5.35, 1.34, 0.33, 1.34, 0.27, 1.34, 0.45, 2.68, 0.45, 2.68, 0.89, 0.27, 0.89, 18.74, 2.68, 0.67, 2.68, 8.03, 2.68, 13.38, 2.68, 0.30, 2.68, 26.77, 5.35, 2.68, 5.35, 1.34, 0.38, 2.68, 5.35, 8.03, 1.34, 8.03, 5.35, 2.68, 0.45, 1.34, 8.03] SNP counts: [149, 6564, 4216, 3260, 2718, 5400, 2104, 3600, 8708, 7776, 10673, 5840, 3587, 15216, 197, 12214, 2078, 3946, 3248, 15453, 3310, 4791, 1042, 1428, 126, 8970, 9023, 9559, 2112, 4499, 1506, 4933, 5266, 1284, 5024, 10493, 3898, 3294, 5059, 12853] SNP IDs counts: [149, 6564, 4216, 3260, 2718, 5400, 2104, 3600, 8708, 7776, 10673, 5840, 3587, 15216, 197, 12214, 2078, 3946, 3248, 15453, 3310, 4791, 1042, 1428, 126, 8970, 9023, 9559, 2112, 4499, 1506, 4933, 5266, 1284, 5024, 10493, 3898, 3294, 5059, 12853] Critical gap: 588319bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.72Mbp, 9.14Mbp, 11.15Mbp, 12.71Mbp, 16.09Mbp, 17.31Mbp, 19.40Mbp, 24.19Mbp, 28.81Mbp, 34.84Mbp, 37.98Mbp, 40.07Mbp, 48.77Mbp, 48.88Mbp, 55.57Mbp, 56.74Mbp, 58.90Mbp, 60.70Mbp, 68.97Mbp, 70.70Mbp, 73.33Mbp, 74.01Mbp, 74.83Mbp, 74.90Mbp, 79.63Mbp, 84.50Mbp, 89.58Mbp, 90.74Mbp, 93.35Mbp, 94.17Mbp, 96.76Mbp, 99.52Mbp, 100.25Mbp, 102.89Mbp, 108.50Mbp, 110.61Mbp, 112.43Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:56:14,101 DEBUG chr11 time: 219.98190899391193 s 2025-01-31 09:56:14,148 DEBUG Processing 272/596 atomic regions from SNP 81430 to 82030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,196 DEBUG Processing 492/677 atomic regions from SNP 147402 to 148002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,212 DEBUG Processing 285/660 atomic regions from SNP 85461 to 86061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,249 DEBUG chr11: Fitting background model for 40 segments 2025-01-31 09:56:14,313 DEBUG Processing 65/559 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,389 DEBUG Processing 273/596 atomic regions from SNP 81730 to 82330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,443 DEBUG Processing 493/677 atomic regions from SNP 147702 to 148302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,444 DEBUG Processing 286/660 atomic regions from SNP 85761 to 86361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,514 DEBUG Processing 66/559 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,607 DEBUG Processing 274/596 atomic regions from SNP 82030 to 82630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,651 DEBUG Processing 287/660 atomic regions from SNP 86061 to 86661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,674 DEBUG Processing 494/677 atomic regions from SNP 148002 to 148602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,719 DEBUG Processing 67/559 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:14,817 DEBUG Processing 275/596 atomic regions from SNP 82330 to 82930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:14,857 DEBUG Processing 288/660 atomic regions from SNP 86361 to 86961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,900 DEBUG Processing 495/677 atomic regions from SNP 148302 to 148902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,921 DEBUG Processing 68/559 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,027 DEBUG Processing 276/596 atomic regions from SNP 82630 to 83230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,062 DEBUG Processing 289/660 atomic regions from SNP 86661 to 87261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,111 DEBUG Processing 69/559 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,124 DEBUG Processing 496/677 atomic regions from SNP 148602 to 149202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,233 DEBUG Processing 277/596 atomic regions from SNP 82930 to 83530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,262 DEBUG Processing 290/660 atomic regions from SNP 86961 to 87561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,294 DEBUG Processing 70/559 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,339 DEBUG Processing 497/677 atomic regions from SNP 148902 to 149502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,452 DEBUG Processing 278/596 atomic regions from SNP 83230 to 83830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,467 DEBUG Processing 291/660 atomic regions from SNP 87261 to 87861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,479 DEBUG Processing 71/559 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,563 DEBUG Processing 498/677 atomic regions from SNP 149202 to 149802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,667 DEBUG Processing 72/559 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,668 DEBUG Processing 279/596 atomic regions from SNP 83530 to 84130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:15,669 DEBUG Processing 292/660 atomic regions from SNP 87561 to 88161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,790 DEBUG Processing 499/677 atomic regions from SNP 149502 to 150102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,855 DEBUG Processing 73/559 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:15,873 DEBUG Processing 293/660 atomic regions from SNP 87861 to 88461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,885 DEBUG Processing 280/596 atomic regions from SNP 83830 to 84430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,012 DEBUG Processing 500/677 atomic regions from SNP 149802 to 150402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,038 DEBUG Processing 74/559 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,072 DEBUG Processing 294/660 atomic regions from SNP 88161 to 88761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,089 DEBUG Processing 281/596 atomic regions from SNP 84130 to 84730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,221 DEBUG Processing 75/559 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,241 DEBUG Processing 501/677 atomic regions from SNP 150102 to 150702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,278 DEBUG Processing 295/660 atomic regions from SNP 88461 to 89061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,305 DEBUG Processing 282/596 atomic regions from SNP 84430 to 85030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,401 DEBUG Processing 76/559 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,459 DEBUG Processing 502/677 atomic regions from SNP 150402 to 151002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,473 DEBUG Processing 296/660 atomic regions from SNP 88761 to 89361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,514 DEBUG Processing 283/596 atomic regions from SNP 84730 to 85330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,582 DEBUG Processing 77/559 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,669 DEBUG Processing 297/660 atomic regions from SNP 89061 to 89661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,702 DEBUG Processing 503/677 atomic regions from SNP 150702 to 151302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,726 DEBUG Processing 284/596 atomic regions from SNP 85030 to 85630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,764 DEBUG Processing 78/559 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:16,867 DEBUG Processing 298/660 atomic regions from SNP 89361 to 89961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,943 DEBUG Processing 504/677 atomic regions from SNP 151002 to 151602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,945 DEBUG Processing 285/596 atomic regions from SNP 85330 to 85930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:16,950 DEBUG Processing 79/559 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,061 DEBUG Processing 299/660 atomic regions from SNP 89661 to 90261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,139 DEBUG Processing 80/559 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,157 DEBUG Processing 286/596 atomic regions from SNP 85630 to 86230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,170 DEBUG Processing 505/677 atomic regions from SNP 151302 to 151902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,255 DEBUG Processing 300/660 atomic regions from SNP 89961 to 90561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,324 DEBUG Processing 81/559 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,366 DEBUG Processing 287/596 atomic regions from SNP 85930 to 86530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,401 DEBUG Processing 506/677 atomic regions from SNP 151602 to 152202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,451 DEBUG Processing 301/660 atomic regions from SNP 90261 to 90861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,524 DEBUG Processing 82/559 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,568 DEBUG Processing 288/596 atomic regions from SNP 86230 to 86830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,631 DEBUG Processing 507/677 atomic regions from SNP 151902 to 152502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,660 DEBUG Processing 302/660 atomic regions from SNP 90561 to 91161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,732 DEBUG Processing 83/559 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,773 DEBUG Processing 289/596 atomic regions from SNP 86530 to 87130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:17,846 DEBUG Processing 508/677 atomic regions from SNP 152202 to 152802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,877 DEBUG Processing 303/660 atomic regions from SNP 90861 to 91461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,955 DEBUG Processing 84/559 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:17,981 DEBUG Processing 290/596 atomic regions from SNP 86830 to 87430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,066 DEBUG Processing 509/677 atomic regions from SNP 152502 to 153102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,087 DEBUG Processing 304/660 atomic regions from SNP 91161 to 91761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,168 DEBUG Processing 85/559 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,189 DEBUG Processing 291/596 atomic regions from SNP 87130 to 87730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,289 DEBUG Processing 305/660 atomic regions from SNP 91461 to 92061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,291 DEBUG Processing 510/677 atomic regions from SNP 152802 to 153402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,384 DEBUG Processing 86/559 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,397 DEBUG Processing 292/596 atomic regions from SNP 87430 to 88030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,493 DEBUG Processing 306/660 atomic regions from SNP 91761 to 92361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,517 DEBUG Processing 511/677 atomic regions from SNP 153102 to 153702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,579 DEBUG Processing 87/559 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,605 DEBUG Processing 293/596 atomic regions from SNP 87730 to 88330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,694 DEBUG Processing 307/660 atomic regions from SNP 92061 to 92661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,753 DEBUG Processing 512/677 atomic regions from SNP 153402 to 154002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,788 DEBUG Processing 88/559 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:18,814 DEBUG Processing 294/596 atomic regions from SNP 88030 to 88630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:18,890 DEBUG Processing 308/660 atomic regions from SNP 92361 to 92961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,996 DEBUG Processing 513/677 atomic regions from SNP 153702 to 154302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,006 DEBUG Processing 89/559 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,027 DEBUG Processing 295/596 atomic regions from SNP 88330 to 88930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,086 DEBUG Processing 309/660 atomic regions from SNP 92661 to 93261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,227 DEBUG Processing 90/559 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,247 DEBUG Processing 296/596 atomic regions from SNP 88630 to 89230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,256 DEBUG Processing 514/677 atomic regions from SNP 154002 to 154602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,290 DEBUG Processing 310/660 atomic regions from SNP 92961 to 93561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,448 DEBUG Processing 91/559 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,464 DEBUG Processing 297/596 atomic regions from SNP 88930 to 89530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,491 DEBUG Processing 311/660 atomic regions from SNP 93261 to 93861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,505 DEBUG Processing 515/677 atomic regions from SNP 154302 to 154902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,663 DEBUG Processing 92/559 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,673 DEBUG Processing 298/596 atomic regions from SNP 89230 to 89830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,693 DEBUG Processing 312/660 atomic regions from SNP 93561 to 94161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,736 DEBUG Processing 516/677 atomic regions from SNP 154602 to 155202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,878 DEBUG Processing 93/559 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:19,886 DEBUG Processing 299/596 atomic regions from SNP 89530 to 90130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,902 DEBUG Processing 313/660 atomic regions from SNP 93861 to 94461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,972 DEBUG Processing 517/677 atomic regions from SNP 154902 to 155502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,090 DEBUG Processing 94/559 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,091 DEBUG Processing 300/596 atomic regions from SNP 89830 to 90430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,103 DEBUG Processing 314/660 atomic regions from SNP 94161 to 94761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,209 DEBUG Processing 518/677 atomic regions from SNP 155202 to 155802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,293 DEBUG Processing 301/596 atomic regions from SNP 90130 to 90730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,301 DEBUG Processing 95/559 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,303 DEBUG Processing 315/660 atomic regions from SNP 94461 to 95061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,440 DEBUG Processing 519/677 atomic regions from SNP 155502 to 156102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,487 DEBUG Processing 96/559 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,501 DEBUG Processing 302/596 atomic regions from SNP 90430 to 91030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,502 DEBUG Processing 316/660 atomic regions from SNP 94761 to 95361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,660 DEBUG Processing 520/677 atomic regions from SNP 155802 to 156402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,675 DEBUG Processing 97/559 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,702 DEBUG Processing 317/660 atomic regions from SNP 95061 to 95661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,711 DEBUG Processing 303/596 atomic regions from SNP 90730 to 91330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,864 DEBUG Processing 98/559 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:20,880 DEBUG Processing 521/677 atomic regions from SNP 156102 to 156702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,906 DEBUG Processing 318/660 atomic regions from SNP 95361 to 95961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,923 DEBUG Processing 304/596 atomic regions from SNP 91030 to 91630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,051 DEBUG Processing 99/559 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,094 DEBUG Processing 522/677 atomic regions from SNP 156402 to 157002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,112 DEBUG Processing 319/660 atomic regions from SNP 95661 to 96261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,128 DEBUG Processing 305/596 atomic regions from SNP 91330 to 91930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,234 DEBUG Processing 100/559 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,310 DEBUG Processing 523/677 atomic regions from SNP 156702 to 157302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,311 DEBUG Processing 320/660 atomic regions from SNP 95961 to 96561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,328 DEBUG Processing 306/596 atomic regions from SNP 91630 to 92230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,424 DEBUG Processing 101/559 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,512 DEBUG Processing 321/660 atomic regions from SNP 96261 to 96861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,527 DEBUG Processing 524/677 atomic regions from SNP 157002 to 157602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,530 DEBUG Processing 307/596 atomic regions from SNP 91930 to 92530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,602 DEBUG Processing 102/559 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,711 DEBUG Processing 322/660 atomic regions from SNP 96561 to 97161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,729 DEBUG Processing 308/596 atomic regions from SNP 92230 to 92830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,741 DEBUG Processing 525/677 atomic regions from SNP 157302 to 157902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,807 DEBUG Processing 103/559 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:21,914 DEBUG Processing 323/660 atomic regions from SNP 96861 to 97461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,932 DEBUG Processing 309/596 atomic regions from SNP 92530 to 93130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,958 DEBUG Processing 526/677 atomic regions from SNP 157602 to 158202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,025 DEBUG Processing 104/559 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,109 DEBUG Processing 324/660 atomic regions from SNP 97161 to 97761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,134 DEBUG Processing 310/596 atomic regions from SNP 92830 to 93430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,170 DEBUG Processing 527/677 atomic regions from SNP 157902 to 158502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,227 DEBUG Processing 105/559 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,306 DEBUG Processing 325/660 atomic regions from SNP 97461 to 98061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,333 DEBUG Processing 311/596 atomic regions from SNP 93130 to 93730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,392 DEBUG Processing 528/677 atomic regions from SNP 158202 to 158802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,406 DEBUG Processing 106/559 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,500 DEBUG Processing 326/660 atomic regions from SNP 97761 to 98361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,526 DEBUG Processing 312/596 atomic regions from SNP 93430 to 94030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,584 DEBUG Processing 107/559 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,603 DEBUG Processing 529/677 atomic regions from SNP 158502 to 159102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,696 DEBUG Processing 327/660 atomic regions from SNP 98061 to 98661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,718 DEBUG Processing 313/596 atomic regions from SNP 93730 to 94330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,787 DEBUG Processing 108/559 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:22,813 DEBUG Processing 530/677 atomic regions from SNP 158802 to 159402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,892 DEBUG Processing 328/660 atomic regions from SNP 98361 to 98961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,913 DEBUG Processing 314/596 atomic regions from SNP 94030 to 94630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,993 DEBUG Processing 109/559 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,029 DEBUG Processing 531/677 atomic regions from SNP 159102 to 159702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,085 DEBUG Processing 329/660 atomic regions from SNP 98661 to 99261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,106 DEBUG Processing 315/596 atomic regions from SNP 94330 to 94930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,172 DEBUG Processing 110/559 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,262 DEBUG Processing 532/677 atomic regions from SNP 159402 to 160002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,281 DEBUG Processing 330/660 atomic regions from SNP 98961 to 99561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,303 DEBUG Processing 316/596 atomic regions from SNP 94630 to 95230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,349 DEBUG Processing 111/559 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,477 DEBUG Processing 331/660 atomic regions from SNP 99261 to 99861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,483 DEBUG Processing 533/677 atomic regions from SNP 159702 to 160302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,500 DEBUG Processing 317/596 atomic regions from SNP 94930 to 95530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,533 DEBUG Processing 112/559 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,675 DEBUG Processing 332/660 atomic regions from SNP 99561 to 100161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,692 DEBUG Processing 534/677 atomic regions from SNP 160002 to 160602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,709 DEBUG Processing 318/596 atomic regions from SNP 95230 to 95830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,712 DEBUG Processing 113/559 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,874 DEBUG Processing 333/660 atomic regions from SNP 99861 to 100461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,898 DEBUG Processing 114/559 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:23,900 DEBUG Processing 535/677 atomic regions from SNP 160302 to 160902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,929 DEBUG Processing 319/596 atomic regions from SNP 95530 to 96130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,072 DEBUG Processing 334/660 atomic regions from SNP 100161 to 100761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,093 DEBUG Processing 115/559 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,108 DEBUG Processing 536/677 atomic regions from SNP 160602 to 161202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,139 DEBUG Processing 320/596 atomic regions from SNP 95830 to 96430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,278 DEBUG Processing 335/660 atomic regions from SNP 100461 to 101061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,290 DEBUG Processing 116/559 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,317 DEBUG Processing 537/677 atomic regions from SNP 160902 to 161502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,335 DEBUG Processing 321/596 atomic regions from SNP 96130 to 96730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,475 DEBUG Processing 117/559 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,489 DEBUG Processing 336/660 atomic regions from SNP 100761 to 101361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,531 DEBUG Processing 538/677 atomic regions from SNP 161202 to 161802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,533 DEBUG Processing 322/596 atomic regions from SNP 96430 to 97030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,669 DEBUG Processing 118/559 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,687 DEBUG Processing 337/660 atomic regions from SNP 101061 to 101661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,735 DEBUG Processing 323/596 atomic regions from SNP 96730 to 97330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,745 DEBUG Processing 539/677 atomic regions from SNP 161502 to 162102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,869 DEBUG Processing 119/559 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:24,883 DEBUG Processing 338/660 atomic regions from SNP 101361 to 101961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,947 DEBUG Processing 324/596 atomic regions from SNP 97030 to 97630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,964 DEBUG Processing 540/677 atomic regions from SNP 161802 to 162402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,062 DEBUG Processing 120/559 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,080 DEBUG Processing 339/660 atomic regions from SNP 101661 to 102261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,171 DEBUG Processing 325/596 atomic regions from SNP 97330 to 97930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,206 DEBUG Processing 541/677 atomic regions from SNP 162102 to 162702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,245 DEBUG Processing 121/559 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,280 DEBUG Processing 340/660 atomic regions from SNP 101961 to 102561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,389 DEBUG Processing 326/596 atomic regions from SNP 97630 to 98230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,432 DEBUG Processing 122/559 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,456 DEBUG Processing 542/677 atomic regions from SNP 162402 to 163002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,484 DEBUG Processing 341/660 atomic regions from SNP 102261 to 102861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,586 DEBUG Processing 327/596 atomic regions from SNP 97930 to 98530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,614 DEBUG Processing 123/559 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,687 DEBUG Processing 342/660 atomic regions from SNP 102561 to 103161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,687 DEBUG Processing 543/677 atomic regions from SNP 162702 to 163302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,783 DEBUG Processing 328/596 atomic regions from SNP 98230 to 98830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,791 DEBUG Processing 124/559 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,888 DEBUG Processing 343/660 atomic regions from SNP 102861 to 103461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,915 DEBUG Processing 544/677 atomic regions from SNP 163002 to 163602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,969 DEBUG Processing 125/559 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:25,983 DEBUG Processing 329/596 atomic regions from SNP 98530 to 99130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,084 DEBUG Processing 344/660 atomic regions from SNP 103161 to 103761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,127 DEBUG Processing 545/677 atomic regions from SNP 163302 to 163902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,143 DEBUG Processing 126/559 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,182 DEBUG Processing 330/596 atomic regions from SNP 98830 to 99430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,276 DEBUG Processing 345/660 atomic regions from SNP 103461 to 104061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,320 DEBUG Processing 127/559 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,342 DEBUG Processing 546/677 atomic regions from SNP 163602 to 164202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,385 DEBUG Processing 331/596 atomic regions from SNP 99130 to 99730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,469 DEBUG Processing 346/660 atomic regions from SNP 103761 to 104361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,496 DEBUG Processing 128/559 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,579 DEBUG Processing 547/677 atomic regions from SNP 163902 to 164502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,588 DEBUG Processing 332/596 atomic regions from SNP 99430 to 100030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,662 DEBUG Processing 347/660 atomic regions from SNP 104061 to 104661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,674 DEBUG Processing 129/559 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,793 DEBUG Processing 333/596 atomic regions from SNP 99730 to 100330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,830 DEBUG Processing 548/677 atomic regions from SNP 164202 to 164802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,849 DEBUG Processing 130/559 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:26,853 DEBUG Processing 348/660 atomic regions from SNP 104361 to 104961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,994 DEBUG Processing 334/596 atomic regions from SNP 100030 to 100630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,029 DEBUG Processing 131/559 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,048 DEBUG Processing 349/660 atomic regions from SNP 104661 to 105261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,072 DEBUG Processing 549/677 atomic regions from SNP 164502 to 165102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,194 DEBUG Processing 335/596 atomic regions from SNP 100330 to 100930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,208 DEBUG Processing 132/559 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,241 DEBUG Processing 350/660 atomic regions from SNP 104961 to 105561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,282 DEBUG Processing 550/677 atomic regions from SNP 164802 to 165402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,389 DEBUG Processing 133/559 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,392 DEBUG Processing 336/596 atomic regions from SNP 100630 to 101230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,434 DEBUG Processing 351/660 atomic regions from SNP 105261 to 105861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,497 DEBUG Processing 551/677 atomic regions from SNP 165102 to 165702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,570 DEBUG Processing 134/559 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,591 DEBUG Processing 337/596 atomic regions from SNP 100930 to 101530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,630 DEBUG Processing 352/660 atomic regions from SNP 105561 to 106161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,722 DEBUG Processing 552/677 atomic regions from SNP 165402 to 166002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,753 DEBUG Processing 135/559 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,793 DEBUG Processing 338/596 atomic regions from SNP 101230 to 101830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,829 DEBUG Processing 353/660 atomic regions from SNP 105861 to 106461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,929 DEBUG Processing 136/559 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:27,957 DEBUG Processing 553/677 atomic regions from SNP 165702 to 166302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,990 DEBUG Processing 339/596 atomic regions from SNP 101530 to 102130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,024 DEBUG Processing 354/660 atomic regions from SNP 106161 to 106761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,107 DEBUG Processing 137/559 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,190 DEBUG Processing 340/596 atomic regions from SNP 101830 to 102430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,196 DEBUG Processing 554/677 atomic regions from SNP 166002 to 166602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,228 DEBUG Processing 355/660 atomic regions from SNP 106461 to 107061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,291 DEBUG Processing 138/559 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,390 DEBUG Processing 341/596 atomic regions from SNP 102130 to 102730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,428 DEBUG Processing 356/660 atomic regions from SNP 106761 to 107361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,432 DEBUG Processing 555/677 atomic regions from SNP 166302 to 166902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,477 DEBUG Processing 139/559 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,592 DEBUG Processing 342/596 atomic regions from SNP 102430 to 103030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,625 DEBUG Processing 357/660 atomic regions from SNP 107061 to 107661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,658 DEBUG Processing 140/559 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,668 DEBUG Processing 556/677 atomic regions from SNP 166602 to 167202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,791 DEBUG Processing 343/596 atomic regions from SNP 102730 to 103330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,819 DEBUG Processing 358/660 atomic regions from SNP 107361 to 107961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,836 DEBUG Processing 141/559 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:28,886 DEBUG Processing 557/677 atomic regions from SNP 166902 to 167502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,991 DEBUG Processing 344/596 atomic regions from SNP 103030 to 103630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,018 DEBUG Processing 142/559 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,052 DEBUG Processing 359/660 atomic regions from SNP 107661 to 108261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,099 DEBUG Processing 558/677 atomic regions from SNP 167202 to 167802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,193 DEBUG Processing 345/596 atomic regions from SNP 103330 to 103930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,199 DEBUG Processing 143/559 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,278 DEBUG Processing 360/660 atomic regions from SNP 107961 to 108561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,317 DEBUG Processing 559/677 atomic regions from SNP 167502 to 168102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,382 DEBUG Processing 144/559 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,396 DEBUG Processing 346/596 atomic regions from SNP 103630 to 104230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,483 DEBUG Processing 361/660 atomic regions from SNP 108261 to 108861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,564 DEBUG Processing 145/559 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,566 DEBUG Processing 560/677 atomic regions from SNP 167802 to 168402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,601 DEBUG Processing 347/596 atomic regions from SNP 103930 to 104530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,694 DEBUG Processing 362/660 atomic regions from SNP 108561 to 109161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,742 DEBUG Processing 146/559 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:29,798 DEBUG Processing 561/677 atomic regions from SNP 168102 to 168702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,805 DEBUG Processing 348/596 atomic regions from SNP 104230 to 104830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,907 DEBUG Processing 363/660 atomic regions from SNP 108861 to 109461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,922 DEBUG Processing 147/559 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,014 DEBUG Processing 349/596 atomic regions from SNP 104530 to 105130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,020 DEBUG Processing 562/677 atomic regions from SNP 168402 to 169002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,105 DEBUG Processing 148/559 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,114 DEBUG Processing 364/660 atomic regions from SNP 109161 to 109761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,216 DEBUG Processing 350/596 atomic regions from SNP 104830 to 105430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,266 DEBUG Processing 563/677 atomic regions from SNP 168702 to 169302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,289 DEBUG Processing 149/559 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,326 DEBUG Processing 365/660 atomic regions from SNP 109461 to 110061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,420 DEBUG Processing 351/596 atomic regions from SNP 105130 to 105730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,473 DEBUG Processing 150/559 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,520 DEBUG Processing 564/677 atomic regions from SNP 169002 to 169602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,535 DEBUG Processing 366/660 atomic regions from SNP 109761 to 110361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,625 DEBUG Processing 352/596 atomic regions from SNP 105430 to 106030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,653 DEBUG Processing 151/559 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,732 DEBUG Processing 367/660 atomic regions from SNP 110061 to 110661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,752 DEBUG Processing 565/677 atomic regions from SNP 169302 to 169902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,826 DEBUG Processing 353/596 atomic regions from SNP 105730 to 106330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,831 DEBUG Processing 152/559 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:30,924 DEBUG Processing 368/660 atomic regions from SNP 110361 to 110961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,967 DEBUG Processing 566/677 atomic regions from SNP 169602 to 170202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,010 DEBUG Processing 153/559 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,028 DEBUG Processing 354/596 atomic regions from SNP 106030 to 106630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,120 DEBUG Processing 369/660 atomic regions from SNP 110661 to 111261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,185 DEBUG Processing 567/677 atomic regions from SNP 169902 to 170502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,193 DEBUG Processing 154/559 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,233 DEBUG Processing 355/596 atomic regions from SNP 106330 to 106930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,342 DEBUG Processing 370/660 atomic regions from SNP 110961 to 111561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,381 DEBUG Processing 155/559 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,403 DEBUG Processing 568/677 atomic regions from SNP 170202 to 170802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,441 DEBUG Processing 356/596 atomic regions from SNP 106630 to 107230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,553 DEBUG Processing 371/660 atomic regions from SNP 111261 to 111861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,565 DEBUG Processing 156/559 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,620 DEBUG Processing 569/677 atomic regions from SNP 170502 to 171102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,644 DEBUG Processing 357/596 atomic regions from SNP 106930 to 107530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,741 DEBUG Processing 157/559 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,744 DEBUG Processing 372/660 atomic regions from SNP 111561 to 112161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,845 DEBUG Processing 358/596 atomic regions from SNP 107230 to 107830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,863 DEBUG Processing 570/677 atomic regions from SNP 170802 to 171402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,919 DEBUG Processing 158/559 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:31,936 DEBUG Processing 373/660 atomic regions from SNP 111861 to 112461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,048 DEBUG Processing 359/596 atomic regions from SNP 107530 to 108130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,080 DEBUG Processing 571/677 atomic regions from SNP 171102 to 171702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,095 DEBUG Processing 159/559 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,129 DEBUG Processing 374/660 atomic regions from SNP 112161 to 112761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,254 DEBUG Processing 360/596 atomic regions from SNP 107830 to 108430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,271 DEBUG Processing 160/559 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,299 DEBUG Processing 572/677 atomic regions from SNP 171402 to 172002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,320 DEBUG Processing 375/660 atomic regions from SNP 112461 to 113061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,448 DEBUG Processing 161/559 atomic regions from SNP 48160 to 48760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,459 DEBUG Processing 361/596 atomic regions from SNP 108130 to 108730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,513 DEBUG Processing 573/677 atomic regions from SNP 171702 to 172302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,522 DEBUG Processing 376/660 atomic regions from SNP 112761 to 113361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,624 DEBUG Processing 162/559 atomic regions from SNP 48460 to 49060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,662 DEBUG Processing 362/596 atomic regions from SNP 108430 to 109030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,727 DEBUG Processing 574/677 atomic regions from SNP 172002 to 172602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,736 DEBUG Processing 377/660 atomic regions from SNP 113061 to 113661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,805 DEBUG Processing 163/559 atomic regions from SNP 48760 to 49360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:32,866 DEBUG Processing 363/596 atomic regions from SNP 108730 to 109330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,934 DEBUG Processing 378/660 atomic regions from SNP 113361 to 113961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,954 DEBUG Processing 575/677 atomic regions from SNP 172302 to 172902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,997 DEBUG Processing 164/559 atomic regions from SNP 49060 to 49660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,067 DEBUG Processing 364/596 atomic regions from SNP 109030 to 109630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,122 DEBUG Processing 379/660 atomic regions from SNP 113661 to 114261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,174 DEBUG Processing 165/559 atomic regions from SNP 49360 to 49960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,186 DEBUG Processing 576/677 atomic regions from SNP 172602 to 173202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,269 DEBUG Processing 365/596 atomic regions from SNP 109330 to 109930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,320 DEBUG Processing 380/660 atomic regions from SNP 113961 to 114561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,359 DEBUG Processing 166/559 atomic regions from SNP 49660 to 50260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,395 DEBUG Processing 577/677 atomic regions from SNP 172902 to 173502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,473 DEBUG Processing 366/596 atomic regions from SNP 109630 to 110230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,524 DEBUG Processing 381/660 atomic regions from SNP 114261 to 114861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,545 DEBUG Processing 167/559 atomic regions from SNP 49960 to 50560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,607 DEBUG Processing 578/677 atomic regions from SNP 173202 to 173802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,678 DEBUG Processing 367/596 atomic regions from SNP 109930 to 110530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,718 DEBUG Processing 382/660 atomic regions from SNP 114561 to 115161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,728 DEBUG Processing 168/559 atomic regions from SNP 50260 to 50860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:33,814 DEBUG Processing 579/677 atomic regions from SNP 173502 to 174102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,880 DEBUG Processing 368/596 atomic regions from SNP 110230 to 110830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,909 DEBUG Processing 383/660 atomic regions from SNP 114861 to 115461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,923 DEBUG Processing 169/559 atomic regions from SNP 50560 to 51160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,028 DEBUG Processing 580/677 atomic regions from SNP 173802 to 174402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,084 DEBUG Processing 369/596 atomic regions from SNP 110530 to 111130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,104 DEBUG Processing 384/660 atomic regions from SNP 115161 to 115761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,114 DEBUG Processing 170/559 atomic regions from SNP 50860 to 51460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,250 DEBUG Processing 581/677 atomic regions from SNP 174102 to 174702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,292 DEBUG Processing 370/596 atomic regions from SNP 110830 to 111430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,296 DEBUG Processing 171/559 atomic regions from SNP 51160 to 51760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,310 DEBUG Processing 385/660 atomic regions from SNP 115461 to 116061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,477 DEBUG Processing 582/677 atomic regions from SNP 174402 to 175002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,496 DEBUG Processing 172/559 atomic regions from SNP 51460 to 52060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,500 DEBUG Processing 371/596 atomic regions from SNP 111130 to 111730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,508 DEBUG Processing 386/660 atomic regions from SNP 115761 to 116361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,703 DEBUG Processing 173/559 atomic regions from SNP 51760 to 52360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,707 DEBUG Processing 387/660 atomic regions from SNP 116061 to 116661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,714 DEBUG Processing 372/596 atomic regions from SNP 111430 to 112030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,722 DEBUG Processing 583/677 atomic regions from SNP 174702 to 175302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,901 DEBUG Processing 174/559 atomic regions from SNP 52060 to 52660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:34,908 DEBUG Processing 388/660 atomic regions from SNP 116361 to 116961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,943 DEBUG Processing 373/596 atomic regions from SNP 111730 to 112330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,966 DEBUG Processing 584/677 atomic regions from SNP 175002 to 175602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,104 DEBUG Processing 175/559 atomic regions from SNP 52360 to 52960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,128 DEBUG Processing 389/660 atomic regions from SNP 116661 to 117261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,146 DEBUG Processing 374/596 atomic regions from SNP 112030 to 112630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,184 DEBUG Processing 585/677 atomic regions from SNP 175302 to 175902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,314 DEBUG Processing 176/559 atomic regions from SNP 52660 to 53260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,320 DEBUG Processing 390/660 atomic regions from SNP 116961 to 117561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,347 DEBUG Processing 375/596 atomic regions from SNP 112330 to 112930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,400 DEBUG Processing 586/677 atomic regions from SNP 175602 to 176202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,510 DEBUG Processing 391/660 atomic regions from SNP 117261 to 117861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,520 DEBUG Processing 177/559 atomic regions from SNP 52960 to 53560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,545 DEBUG Processing 376/596 atomic regions from SNP 112630 to 113230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,618 DEBUG Processing 587/677 atomic regions from SNP 175902 to 176502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,697 DEBUG Processing 392/660 atomic regions from SNP 117561 to 118161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,714 DEBUG Processing 178/559 atomic regions from SNP 53260 to 53860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,742 DEBUG Processing 377/596 atomic regions from SNP 112930 to 113530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,831 DEBUG Processing 588/677 atomic regions from SNP 176202 to 176802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,887 DEBUG Processing 393/660 atomic regions from SNP 117861 to 118461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,907 DEBUG Processing 179/559 atomic regions from SNP 53560 to 54160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,940 DEBUG Processing 378/596 atomic regions from SNP 113230 to 113830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,047 DEBUG Processing 589/677 atomic regions from SNP 176502 to 177102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,082 DEBUG Processing 394/660 atomic regions from SNP 118161 to 118761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,096 DEBUG Processing 180/559 atomic regions from SNP 53860 to 54460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,139 DEBUG Processing 379/596 atomic regions from SNP 113530 to 114130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,261 DEBUG Processing 590/677 atomic regions from SNP 176802 to 177402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,279 DEBUG Processing 395/660 atomic regions from SNP 118461 to 119061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,286 DEBUG Processing 181/559 atomic regions from SNP 54160 to 54760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,346 DEBUG Processing 380/596 atomic regions from SNP 113830 to 114430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,472 DEBUG Processing 182/559 atomic regions from SNP 54460 to 55060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,475 DEBUG Processing 396/660 atomic regions from SNP 118761 to 119361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,476 DEBUG Processing 591/677 atomic regions from SNP 177102 to 177702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,549 DEBUG Processing 381/596 atomic regions from SNP 114130 to 114730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,652 DEBUG Processing 183/559 atomic regions from SNP 54760 to 55360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,669 DEBUG Processing 397/660 atomic regions from SNP 119061 to 119661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,694 DEBUG Processing 592/677 atomic regions from SNP 177402 to 178002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,751 DEBUG Processing 382/596 atomic regions from SNP 114430 to 115030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,825 DEBUG Processing 184/559 atomic regions from SNP 55060 to 55660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,860 DEBUG Processing 398/660 atomic regions from SNP 119361 to 119961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,909 DEBUG Processing 593/677 atomic regions from SNP 177702 to 178302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,954 DEBUG Processing 383/596 atomic regions from SNP 114730 to 115330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,011 DEBUG Processing 185/559 atomic regions from SNP 55360 to 55960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,067 DEBUG Processing 399/660 atomic regions from SNP 119661 to 120261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,126 DEBUG Processing 594/677 atomic regions from SNP 178002 to 178602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,160 DEBUG Processing 384/596 atomic regions from SNP 115030 to 115630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,200 DEBUG Processing 186/559 atomic regions from SNP 55660 to 56260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,258 DEBUG Processing 400/660 atomic regions from SNP 119961 to 120561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,340 DEBUG Processing 595/677 atomic regions from SNP 178302 to 178902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,367 DEBUG Processing 385/596 atomic regions from SNP 115330 to 115930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,377 DEBUG Processing 187/559 atomic regions from SNP 55960 to 56560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,448 DEBUG Processing 401/660 atomic regions from SNP 120261 to 120861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,556 DEBUG Processing 596/677 atomic regions from SNP 178602 to 179202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,557 DEBUG Processing 188/559 atomic regions from SNP 56260 to 56860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,576 DEBUG Processing 386/596 atomic regions from SNP 115630 to 116230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,657 DEBUG Processing 402/660 atomic regions from SNP 120561 to 121161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,731 DEBUG Processing 189/559 atomic regions from SNP 56560 to 57160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,771 DEBUG Processing 597/677 atomic regions from SNP 178902 to 179502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,782 DEBUG Processing 387/596 atomic regions from SNP 115930 to 116530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,877 DEBUG Processing 403/660 atomic regions from SNP 120861 to 121461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,906 DEBUG Processing 190/559 atomic regions from SNP 56860 to 57460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,988 DEBUG Processing 598/677 atomic regions from SNP 179202 to 179802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,990 DEBUG Processing 388/596 atomic regions from SNP 116230 to 116830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,084 DEBUG Processing 191/559 atomic regions from SNP 57160 to 57760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,101 DEBUG Processing 404/660 atomic regions from SNP 121161 to 121761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,196 DEBUG Processing 389/596 atomic regions from SNP 116530 to 117130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,206 DEBUG Processing 599/677 atomic regions from SNP 179502 to 180102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,268 DEBUG Processing 192/559 atomic regions from SNP 57460 to 58060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,342 DEBUG Processing 405/660 atomic regions from SNP 121461 to 122061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,402 DEBUG Processing 390/596 atomic regions from SNP 116830 to 117430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,444 DEBUG Processing 600/677 atomic regions from SNP 179802 to 180402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,459 DEBUG Processing 193/559 atomic regions from SNP 57760 to 58360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,580 DEBUG Processing 406/660 atomic regions from SNP 121761 to 122361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,609 DEBUG Processing 391/596 atomic regions from SNP 117130 to 117730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,656 DEBUG Processing 194/559 atomic regions from SNP 58060 to 58660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,696 DEBUG Processing 601/677 atomic regions from SNP 180102 to 180702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,806 DEBUG Processing 407/660 atomic regions from SNP 122061 to 122661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,808 DEBUG Processing 392/596 atomic regions from SNP 117430 to 118030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,846 DEBUG Processing 195/559 atomic regions from SNP 58360 to 58960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,930 DEBUG Processing 602/677 atomic regions from SNP 180402 to 181002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,009 DEBUG Processing 393/596 atomic regions from SNP 117730 to 118330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,009 DEBUG Processing 408/660 atomic regions from SNP 122361 to 122961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,036 DEBUG Processing 196/559 atomic regions from SNP 58660 to 59260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,149 DEBUG Processing 603/677 atomic regions from SNP 180702 to 181302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,210 DEBUG Processing 409/660 atomic regions from SNP 122661 to 123261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,215 DEBUG Processing 394/596 atomic regions from SNP 118030 to 118630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,231 DEBUG Processing 197/559 atomic regions from SNP 58960 to 59560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,364 DEBUG Processing 604/677 atomic regions from SNP 181002 to 181602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,409 DEBUG Processing 410/660 atomic regions from SNP 122961 to 123561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,418 DEBUG Processing 395/596 atomic regions from SNP 118330 to 118930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,439 DEBUG Processing 198/559 atomic regions from SNP 59260 to 59860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,581 DEBUG Processing 605/677 atomic regions from SNP 181302 to 181902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,610 DEBUG Processing 411/660 atomic regions from SNP 123261 to 123861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,626 DEBUG Processing 396/596 atomic regions from SNP 118630 to 119230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,642 DEBUG Processing 199/559 atomic regions from SNP 59560 to 60160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,800 DEBUG Processing 606/677 atomic regions from SNP 181602 to 182202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,811 DEBUG Processing 412/660 atomic regions from SNP 123561 to 124161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,824 DEBUG Processing 200/559 atomic regions from SNP 59860 to 60460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,832 DEBUG Processing 397/596 atomic regions from SNP 118930 to 119530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,009 DEBUG Processing 201/559 atomic regions from SNP 60160 to 60760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,013 DEBUG Processing 413/660 atomic regions from SNP 123861 to 124461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,029 DEBUG Processing 607/677 atomic regions from SNP 181902 to 182502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,038 DEBUG Processing 398/596 atomic regions from SNP 119230 to 119830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,195 DEBUG Processing 202/559 atomic regions from SNP 60460 to 61060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,214 DEBUG Processing 414/660 atomic regions from SNP 124161 to 124761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,246 DEBUG Processing 399/596 atomic regions from SNP 119530 to 120130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,256 DEBUG Processing 608/677 atomic regions from SNP 182202 to 182802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,377 DEBUG Processing 203/559 atomic regions from SNP 60760 to 61360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,411 DEBUG Processing 415/660 atomic regions from SNP 124461 to 125061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,451 DEBUG Processing 400/596 atomic regions from SNP 119830 to 120430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,490 DEBUG Processing 609/677 atomic regions from SNP 182502 to 183102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,556 DEBUG Processing 204/559 atomic regions from SNP 61060 to 61660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,609 DEBUG Processing 416/660 atomic regions from SNP 124761 to 125361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,658 DEBUG Processing 401/596 atomic regions from SNP 120130 to 120730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,710 DEBUG Processing 610/677 atomic regions from SNP 182802 to 183402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,739 DEBUG Processing 205/559 atomic regions from SNP 61360 to 61960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,805 DEBUG Processing 417/660 atomic regions from SNP 125061 to 125661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,865 DEBUG Processing 402/596 atomic regions from SNP 120430 to 121030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,920 DEBUG Processing 206/559 atomic regions from SNP 61660 to 62260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,925 DEBUG Processing 611/677 atomic regions from SNP 183102 to 183702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,998 DEBUG Processing 418/660 atomic regions from SNP 125361 to 125961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,064 DEBUG Processing 403/596 atomic regions from SNP 120730 to 121330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,098 DEBUG Processing 207/559 atomic regions from SNP 61960 to 62560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,136 DEBUG Processing 612/677 atomic regions from SNP 183402 to 184002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,205 DEBUG Processing 419/660 atomic regions from SNP 125661 to 126261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,275 DEBUG Processing 404/596 atomic regions from SNP 121030 to 121630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,302 DEBUG Processing 208/559 atomic regions from SNP 62260 to 62860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,353 DEBUG Processing 613/677 atomic regions from SNP 183702 to 184302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,420 DEBUG Processing 420/660 atomic regions from SNP 125961 to 126561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,484 DEBUG Processing 405/596 atomic regions from SNP 121330 to 121930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,512 DEBUG Processing 209/559 atomic regions from SNP 62560 to 63160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,565 DEBUG Processing 614/677 atomic regions from SNP 184002 to 184602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,627 DEBUG Processing 421/660 atomic regions from SNP 126261 to 126861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,691 DEBUG Processing 406/596 atomic regions from SNP 121630 to 122230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,725 DEBUG Processing 210/559 atomic regions from SNP 62860 to 63460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,780 DEBUG Processing 615/677 atomic regions from SNP 184302 to 184902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,823 DEBUG Processing 422/660 atomic regions from SNP 126561 to 127161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,921 DEBUG Processing 407/596 atomic regions from SNP 121930 to 122530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,946 DEBUG Processing 211/559 atomic regions from SNP 63160 to 63760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,993 DEBUG Processing 616/677 atomic regions from SNP 184602 to 185202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,023 DEBUG Processing 423/660 atomic regions from SNP 126861 to 127461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,152 DEBUG Processing 212/559 atomic regions from SNP 63460 to 64060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,163 DEBUG Processing 408/596 atomic regions from SNP 122230 to 122830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,213 DEBUG Processing 617/677 atomic regions from SNP 184902 to 185502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,232 DEBUG Processing 424/660 atomic regions from SNP 127161 to 127761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,364 DEBUG Processing 213/559 atomic regions from SNP 63760 to 64360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,376 DEBUG Processing 409/596 atomic regions from SNP 122530 to 123130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,445 DEBUG Processing 425/660 atomic regions from SNP 127461 to 128061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,455 DEBUG Processing 618/677 atomic regions from SNP 185202 to 185802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,569 DEBUG Processing 214/559 atomic regions from SNP 64060 to 64660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,586 DEBUG Processing 410/596 atomic regions from SNP 122830 to 123430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,681 DEBUG Processing 426/660 atomic regions from SNP 127761 to 128361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,698 DEBUG Processing 619/677 atomic regions from SNP 185502 to 186102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,778 DEBUG Processing 215/559 atomic regions from SNP 64360 to 64960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,824 DEBUG Processing 411/596 atomic regions from SNP 123130 to 123730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,913 DEBUG Processing 620/677 atomic regions from SNP 185802 to 186402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,920 DEBUG Processing 427/660 atomic regions from SNP 128061 to 128661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,965 DEBUG Processing 216/559 atomic regions from SNP 64660 to 65260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,055 DEBUG Processing 412/596 atomic regions from SNP 123430 to 124030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,131 DEBUG Processing 621/677 atomic regions from SNP 186102 to 186702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,148 DEBUG Processing 428/660 atomic regions from SNP 128361 to 128961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,150 DEBUG Processing 217/559 atomic regions from SNP 64960 to 65560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,265 DEBUG Processing 413/596 atomic regions from SNP 123730 to 124330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,336 DEBUG Processing 218/559 atomic regions from SNP 65260 to 65860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,347 DEBUG Processing 622/677 atomic regions from SNP 186402 to 187002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,380 DEBUG Processing 429/660 atomic regions from SNP 128661 to 129261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,471 DEBUG Processing 414/596 atomic regions from SNP 124030 to 124630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,525 DEBUG Processing 219/559 atomic regions from SNP 65560 to 66160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,571 DEBUG Processing 623/677 atomic regions from SNP 186702 to 187302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,625 DEBUG Processing 430/660 atomic regions from SNP 128961 to 129561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,678 DEBUG Processing 415/596 atomic regions from SNP 124330 to 124930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,711 DEBUG Processing 220/559 atomic regions from SNP 65860 to 66460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,790 DEBUG Processing 624/677 atomic regions from SNP 187002 to 187602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,842 DEBUG Processing 431/660 atomic regions from SNP 129261 to 129861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,884 DEBUG Processing 416/596 atomic regions from SNP 124630 to 125230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,892 DEBUG Processing 221/559 atomic regions from SNP 66160 to 66760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,018 DEBUG Processing 625/677 atomic regions from SNP 187302 to 187902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,053 DEBUG Processing 432/660 atomic regions from SNP 129561 to 130161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,077 DEBUG Processing 222/559 atomic regions from SNP 66460 to 67060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,098 DEBUG Processing 417/596 atomic regions from SNP 124930 to 125530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,239 DEBUG Processing 626/677 atomic regions from SNP 187602 to 188202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,259 DEBUG Processing 433/660 atomic regions from SNP 129861 to 130461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,265 DEBUG Processing 223/559 atomic regions from SNP 66760 to 67360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,312 DEBUG Processing 418/596 atomic regions from SNP 125230 to 125830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,459 DEBUG Processing 224/559 atomic regions from SNP 67060 to 67660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,467 DEBUG Processing 627/677 atomic regions from SNP 187902 to 188502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,472 DEBUG Processing 434/660 atomic regions from SNP 130161 to 130761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,553 DEBUG Processing 419/596 atomic regions from SNP 125530 to 126130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,757 DEBUG Processing 225/559 atomic regions from SNP 67360 to 67960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,779 DEBUG Processing 435/660 atomic regions from SNP 130461 to 131061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,801 DEBUG Processing 420/596 atomic regions from SNP 125830 to 126430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,812 DEBUG Processing 628/677 atomic regions from SNP 188202 to 188802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,949 DEBUG Processing 226/559 atomic regions from SNP 67660 to 68260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,987 DEBUG Processing 436/660 atomic regions from SNP 130761 to 131361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,019 DEBUG Processing 421/596 atomic regions from SNP 126130 to 126730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,076 DEBUG Processing 629/677 atomic regions from SNP 188502 to 189102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,176 DEBUG Processing 227/559 atomic regions from SNP 67960 to 68560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,214 DEBUG Processing 437/660 atomic regions from SNP 131061 to 131661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,253 DEBUG Processing 422/596 atomic regions from SNP 126430 to 127030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,335 DEBUG Processing 630/677 atomic regions from SNP 188802 to 189402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,363 DEBUG Processing 228/559 atomic regions from SNP 68260 to 68860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,422 DEBUG Processing 438/660 atomic regions from SNP 131361 to 131961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,470 DEBUG Processing 423/596 atomic regions from SNP 126730 to 127330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,550 DEBUG Processing 229/559 atomic regions from SNP 68560 to 69160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,592 DEBUG Processing 631/677 atomic regions from SNP 189102 to 189702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,628 DEBUG Processing 439/660 atomic regions from SNP 131661 to 132261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,704 DEBUG Processing 424/596 atomic regions from SNP 127030 to 127630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,741 DEBUG Processing 230/559 atomic regions from SNP 68860 to 69460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,832 DEBUG Processing 632/677 atomic regions from SNP 189402 to 190002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,847 DEBUG Processing 440/660 atomic regions from SNP 131961 to 132561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,960 DEBUG Processing 231/559 atomic regions from SNP 69160 to 69760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,981 DEBUG Processing 425/596 atomic regions from SNP 127330 to 127930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,087 DEBUG Processing 441/660 atomic regions from SNP 132261 to 132861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,106 DEBUG Processing 633/677 atomic regions from SNP 189702 to 190302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,154 DEBUG Processing 232/559 atomic regions from SNP 69460 to 70060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,233 DEBUG Processing 426/596 atomic regions from SNP 127630 to 128230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,303 DEBUG Processing 442/660 atomic regions from SNP 132561 to 133161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,347 DEBUG Processing 634/677 atomic regions from SNP 190002 to 190602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,349 DEBUG Processing 233/559 atomic regions from SNP 69760 to 70360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,485 DEBUG Processing 427/596 atomic regions from SNP 127930 to 128530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,512 DEBUG Processing 443/660 atomic regions from SNP 132861 to 133461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,548 DEBUG Processing 234/559 atomic regions from SNP 70060 to 70660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,596 DEBUG Processing 635/677 atomic regions from SNP 190302 to 190902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,726 DEBUG Processing 444/660 atomic regions from SNP 133161 to 133761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,738 DEBUG Processing 428/596 atomic regions from SNP 128230 to 128830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,746 DEBUG Processing 235/559 atomic regions from SNP 70360 to 70960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,845 DEBUG Processing 636/677 atomic regions from SNP 190602 to 191202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,944 DEBUG Processing 236/559 atomic regions from SNP 70660 to 71260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,952 DEBUG Processing 445/660 atomic regions from SNP 133461 to 134061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,004 DEBUG Processing 429/596 atomic regions from SNP 128530 to 129130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,106 DEBUG Processing 637/677 atomic regions from SNP 190902 to 191502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,138 DEBUG Processing 237/559 atomic regions from SNP 70960 to 71560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,188 DEBUG Processing 446/660 atomic regions from SNP 133761 to 134361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,255 DEBUG Processing 430/596 atomic regions from SNP 128830 to 129430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,326 DEBUG Processing 238/559 atomic regions from SNP 71260 to 71860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,347 DEBUG Processing 638/677 atomic regions from SNP 191202 to 191802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,432 DEBUG Processing 447/660 atomic regions from SNP 134061 to 134661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,510 DEBUG Processing 431/596 atomic regions from SNP 129130 to 129730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,516 DEBUG Processing 239/559 atomic regions from SNP 71560 to 72160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,584 DEBUG Processing 639/677 atomic regions from SNP 191502 to 192102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,659 DEBUG Processing 448/660 atomic regions from SNP 134361 to 134961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,709 DEBUG Processing 240/559 atomic regions from SNP 71860 to 72460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,742 DEBUG Processing 432/596 atomic regions from SNP 129430 to 130030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,818 DEBUG Processing 640/677 atomic regions from SNP 191802 to 192402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,884 DEBUG Processing 449/660 atomic regions from SNP 134661 to 135261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,901 DEBUG Processing 241/559 atomic regions from SNP 72160 to 72760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,968 DEBUG Processing 433/596 atomic regions from SNP 129730 to 130330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,044 DEBUG Processing 641/677 atomic regions from SNP 192102 to 192702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,093 DEBUG Processing 242/559 atomic regions from SNP 72460 to 73060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,116 DEBUG Processing 450/660 atomic regions from SNP 134961 to 135561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,201 DEBUG Processing 434/596 atomic regions from SNP 130030 to 130630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,276 DEBUG Processing 642/677 atomic regions from SNP 192402 to 193002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,288 DEBUG Processing 243/559 atomic regions from SNP 72760 to 73360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,356 DEBUG Processing 451/660 atomic regions from SNP 135261 to 135861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,416 DEBUG Processing 435/596 atomic regions from SNP 130330 to 130930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,485 DEBUG Processing 244/559 atomic regions from SNP 73060 to 73660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,525 DEBUG Processing 643/677 atomic regions from SNP 192702 to 193302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,604 DEBUG Processing 452/660 atomic regions from SNP 135561 to 136161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,655 DEBUG Processing 436/596 atomic regions from SNP 130630 to 131230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,670 DEBUG Processing 245/559 atomic regions from SNP 73360 to 73960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,760 DEBUG Processing 644/677 atomic regions from SNP 193002 to 193602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,832 DEBUG Processing 453/660 atomic regions from SNP 135861 to 136461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,858 DEBUG Processing 246/559 atomic regions from SNP 73660 to 74260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,906 DEBUG Processing 437/596 atomic regions from SNP 130930 to 131530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,985 DEBUG Processing 645/677 atomic regions from SNP 193302 to 193902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,058 DEBUG Processing 247/559 atomic regions from SNP 73960 to 74560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,066 DEBUG Processing 454/660 atomic regions from SNP 136161 to 136761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,143 DEBUG Processing 438/596 atomic regions from SNP 131230 to 131830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,219 DEBUG Processing 646/677 atomic regions from SNP 193602 to 194202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,261 DEBUG Processing 248/559 atomic regions from SNP 74260 to 74860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,306 DEBUG Processing 455/660 atomic regions from SNP 136461 to 137061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,398 DEBUG Processing 439/596 atomic regions from SNP 131530 to 132130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,451 DEBUG Processing 249/559 atomic regions from SNP 74560 to 75160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,453 DEBUG Processing 647/677 atomic regions from SNP 193902 to 194502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,533 DEBUG Processing 456/660 atomic regions from SNP 136761 to 137361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,646 DEBUG Processing 250/559 atomic regions from SNP 74860 to 75460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,651 DEBUG Processing 440/596 atomic regions from SNP 131830 to 132430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,680 DEBUG Processing 648/677 atomic regions from SNP 194202 to 194802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,761 DEBUG Processing 457/660 atomic regions from SNP 137061 to 137661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,839 DEBUG Processing 251/559 atomic regions from SNP 75160 to 75760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,898 DEBUG Processing 441/596 atomic regions from SNP 132130 to 132730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,912 DEBUG Processing 649/677 atomic regions from SNP 194502 to 195102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,995 DEBUG Processing 458/660 atomic regions from SNP 137361 to 137961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,030 DEBUG Processing 252/559 atomic regions from SNP 75460 to 76060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,147 DEBUG Processing 650/677 atomic regions from SNP 194802 to 195402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,150 DEBUG Processing 442/596 atomic regions from SNP 132430 to 133030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,220 DEBUG Processing 253/559 atomic regions from SNP 75760 to 76360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,229 DEBUG Processing 459/660 atomic regions from SNP 137661 to 138261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,382 DEBUG Processing 651/677 atomic regions from SNP 195102 to 195702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,412 DEBUG Processing 443/596 atomic regions from SNP 132730 to 133330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,415 DEBUG Processing 254/559 atomic regions from SNP 76060 to 76660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,462 DEBUG Processing 460/660 atomic regions from SNP 137961 to 138561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,611 DEBUG Processing 255/559 atomic regions from SNP 76360 to 76960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,619 DEBUG Processing 652/677 atomic regions from SNP 195402 to 196002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,673 DEBUG Processing 461/660 atomic regions from SNP 138261 to 138861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,677 DEBUG Processing 444/596 atomic regions from SNP 133030 to 133630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,805 DEBUG Processing 256/559 atomic regions from SNP 76660 to 77260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,853 DEBUG Processing 653/677 atomic regions from SNP 195702 to 196302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,877 DEBUG Processing 462/660 atomic regions from SNP 138561 to 139161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,936 DEBUG Processing 445/596 atomic regions from SNP 133330 to 133930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,999 DEBUG Processing 257/559 atomic regions from SNP 76960 to 77560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,086 DEBUG Processing 654/677 atomic regions from SNP 196002 to 196602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,091 DEBUG Processing 463/660 atomic regions from SNP 138861 to 139461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,191 DEBUG Processing 258/559 atomic regions from SNP 77260 to 77860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,194 DEBUG Processing 446/596 atomic regions from SNP 133630 to 134230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,319 DEBUG Processing 464/660 atomic regions from SNP 139161 to 139761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,329 DEBUG Processing 655/677 atomic regions from SNP 196302 to 196902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,380 DEBUG Processing 259/559 atomic regions from SNP 77560 to 78160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,442 DEBUG Processing 447/596 atomic regions from SNP 133930 to 134530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,531 DEBUG Processing 465/660 atomic regions from SNP 139461 to 140061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,564 DEBUG Processing 656/677 atomic regions from SNP 196602 to 197202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,573 DEBUG Processing 260/559 atomic regions from SNP 77860 to 78460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,707 DEBUG Processing 448/596 atomic regions from SNP 134230 to 134830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,752 DEBUG Processing 466/660 atomic regions from SNP 139761 to 140361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,770 DEBUG Processing 261/559 atomic regions from SNP 78160 to 78760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,803 DEBUG Processing 657/677 atomic regions from SNP 196902 to 197502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,966 DEBUG Processing 262/559 atomic regions from SNP 78460 to 79060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,969 DEBUG Processing 449/596 atomic regions from SNP 134530 to 135130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,976 DEBUG Processing 467/660 atomic regions from SNP 140061 to 140661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,032 DEBUG Processing 658/677 atomic regions from SNP 197202 to 197802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,158 DEBUG Processing 263/559 atomic regions from SNP 78760 to 79360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,218 DEBUG Processing 468/660 atomic regions from SNP 140361 to 140961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,225 DEBUG Processing 450/596 atomic regions from SNP 134830 to 135430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,260 DEBUG Processing 659/677 atomic regions from SNP 197502 to 198102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,346 DEBUG Processing 264/559 atomic regions from SNP 79060 to 79660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,467 DEBUG Processing 469/660 atomic regions from SNP 140661 to 141261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,485 DEBUG Processing 451/596 atomic regions from SNP 135130 to 135730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,487 DEBUG Processing 660/677 atomic regions from SNP 197802 to 198402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,532 DEBUG Processing 265/559 atomic regions from SNP 79360 to 79960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,708 DEBUG Processing 470/660 atomic regions from SNP 140961 to 141561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,717 DEBUG Processing 661/677 atomic regions from SNP 198102 to 198702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,732 DEBUG Processing 266/559 atomic regions from SNP 79660 to 80260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,740 DEBUG Processing 452/596 atomic regions from SNP 135430 to 136030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,920 DEBUG Processing 267/559 atomic regions from SNP 79960 to 80560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,935 DEBUG Processing 662/677 atomic regions from SNP 198402 to 199002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,936 DEBUG Processing 471/660 atomic regions from SNP 141261 to 141861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,965 DEBUG Processing 453/596 atomic regions from SNP 135730 to 136330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,110 DEBUG Processing 268/559 atomic regions from SNP 80260 to 80860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,165 DEBUG Processing 663/677 atomic regions from SNP 198702 to 199302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,165 DEBUG Processing 472/660 atomic regions from SNP 141561 to 142161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,209 DEBUG Processing 454/596 atomic regions from SNP 136030 to 136630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,290 DEBUG Processing 269/559 atomic regions from SNP 80560 to 81160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,374 DEBUG Processing 473/660 atomic regions from SNP 141861 to 142461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,389 DEBUG Processing 664/677 atomic regions from SNP 199002 to 199602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,447 DEBUG Processing 455/596 atomic regions from SNP 136330 to 136930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,468 DEBUG Processing 270/559 atomic regions from SNP 80860 to 81460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,577 DEBUG Processing 474/660 atomic regions from SNP 142161 to 142761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,613 DEBUG Processing 665/677 atomic regions from SNP 199302 to 199902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,657 DEBUG Processing 271/559 atomic regions from SNP 81160 to 81760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,683 DEBUG Processing 456/596 atomic regions from SNP 136630 to 137230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,784 DEBUG Processing 475/660 atomic regions from SNP 142461 to 143061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,852 DEBUG Processing 666/677 atomic regions from SNP 199602 to 200202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,852 DEBUG Processing 272/559 atomic regions from SNP 81460 to 82060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,917 DEBUG Processing 457/596 atomic regions from SNP 136930 to 137530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,990 DEBUG Processing 476/660 atomic regions from SNP 142761 to 143361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,044 DEBUG Processing 273/559 atomic regions from SNP 81760 to 82360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,089 DEBUG Processing 667/677 atomic regions from SNP 199902 to 200502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,138 DEBUG Processing 458/596 atomic regions from SNP 137230 to 137830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,195 DEBUG Processing 477/660 atomic regions from SNP 143061 to 143661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,229 DEBUG Processing 274/559 atomic regions from SNP 82060 to 82660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,314 DEBUG Processing 668/677 atomic regions from SNP 200202 to 200802 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,377 DEBUG Processing 459/596 atomic regions from SNP 137530 to 138130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,403 DEBUG Processing 478/660 atomic regions from SNP 143361 to 143961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,419 DEBUG Processing 275/559 atomic regions from SNP 82360 to 82960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,540 DEBUG Processing 669/677 atomic regions from SNP 200502 to 201102 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,607 DEBUG Processing 276/559 atomic regions from SNP 82660 to 83260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,608 DEBUG Processing 479/660 atomic regions from SNP 143661 to 144261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,617 DEBUG Processing 460/596 atomic regions from SNP 137830 to 138430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,770 DEBUG Processing 670/677 atomic regions from SNP 200802 to 201402 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,796 DEBUG Processing 277/559 atomic regions from SNP 82960 to 83560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,812 DEBUG Processing 480/660 atomic regions from SNP 143961 to 144561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,859 DEBUG Processing 461/596 atomic regions from SNP 138130 to 138730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,024 DEBUG Processing 278/559 atomic regions from SNP 83260 to 83860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,030 DEBUG Processing 671/677 atomic regions from SNP 201102 to 201702 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,162 DEBUG Processing 481/660 atomic regions from SNP 144261 to 144861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,444 DEBUG Processing 279/559 atomic regions from SNP 83560 to 84160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,462 DEBUG Processing 462/596 atomic regions from SNP 138430 to 139030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,483 DEBUG Processing 672/677 atomic regions from SNP 201402 to 202002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,486 DEBUG Processing 482/660 atomic regions from SNP 144561 to 145161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,650 DEBUG Processing 280/559 atomic regions from SNP 83860 to 84460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,692 DEBUG Processing 483/660 atomic regions from SNP 144861 to 145461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,704 DEBUG Processing 463/596 atomic regions from SNP 138730 to 139330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,706 DEBUG Processing 673/677 atomic regions from SNP 201702 to 202302 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,839 DEBUG Processing 281/559 atomic regions from SNP 84160 to 84760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,894 DEBUG Processing 484/660 atomic regions from SNP 145161 to 145761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,928 DEBUG Processing 674/677 atomic regions from SNP 202002 to 202602 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,953 DEBUG Processing 464/596 atomic regions from SNP 139030 to 139630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,030 DEBUG Processing 282/559 atomic regions from SNP 84460 to 85060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,097 DEBUG Processing 485/660 atomic regions from SNP 145461 to 146061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,150 DEBUG Processing 675/677 atomic regions from SNP 202302 to 202902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,194 DEBUG Processing 465/596 atomic regions from SNP 139330 to 139930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,214 DEBUG Processing 283/559 atomic regions from SNP 84760 to 85360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,292 DEBUG Processing 486/660 atomic regions from SNP 145761 to 146361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,401 DEBUG Processing 676/677 atomic regions from SNP 202602 to 203202 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,401 DEBUG Processing 284/559 atomic regions from SNP 85060 to 85660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,416 DEBUG Processing 466/596 atomic regions from SNP 139630 to 140230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,495 DEBUG Processing 487/660 atomic regions from SNP 146061 to 146661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,587 DEBUG Processing 285/559 atomic regions from SNP 85360 to 85960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,637 DEBUG Processing 467/596 atomic regions from SNP 139930 to 140530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,670 DEBUG Processing 677/677 atomic regions from SNP 202902 to 203502 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,706 DEBUG Processing 488/660 atomic regions from SNP 146361 to 146961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,774 DEBUG Processing 286/559 atomic regions from SNP 85660 to 86260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,837 DEBUG Unique SNPs positions in subchromosome 1: 203503 2025-01-31 09:56:56,867 DEBUG Processing 468/596 atomic regions from SNP 140230 to 140830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,907 DEBUG Processing 489/660 atomic regions from SNP 146661 to 147261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,964 DEBUG Processing 287/559 atomic regions from SNP 85960 to 86560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,111 DEBUG Processing 490/660 atomic regions from SNP 146961 to 147561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,115 DEBUG Processing 469/596 atomic regions from SNP 140530 to 141130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,152 DEBUG Processing 288/559 atomic regions from SNP 86260 to 86860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,313 DEBUG Processing 491/660 atomic regions from SNP 147261 to 147861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,339 DEBUG Processing 289/559 atomic regions from SNP 86560 to 87160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,346 DEBUG Processing 470/596 atomic regions from SNP 140830 to 141430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,518 DEBUG Processing 492/660 atomic regions from SNP 147561 to 148161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,531 DEBUG Processing 290/559 atomic regions from SNP 86860 to 87460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,569 DEBUG Processing 471/596 atomic regions from SNP 141130 to 141730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,715 DEBUG Processing 291/559 atomic regions from SNP 87160 to 87760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,720 DEBUG Processing 493/660 atomic regions from SNP 147861 to 148461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,797 DEBUG Processing 472/596 atomic regions from SNP 141430 to 142030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,904 DEBUG Processing 292/559 atomic regions from SNP 87460 to 88060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,965 DEBUG Processing 494/660 atomic regions from SNP 148161 to 148761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,166 DEBUG Processing 473/596 atomic regions from SNP 141730 to 142330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,360 DEBUG Processing 293/559 atomic regions from SNP 87760 to 88360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,410 DEBUG Processing 495/660 atomic regions from SNP 148461 to 149061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,434 DEBUG Processing 474/596 atomic regions from SNP 142030 to 142630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,768 DEBUG Processing 294/559 atomic regions from SNP 88060 to 88660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,849 DEBUG Processing 496/660 atomic regions from SNP 148761 to 149361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,869 DEBUG Processing 475/596 atomic regions from SNP 142330 to 142930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,942 DEBUG Processing 295/559 atomic regions from SNP 88360 to 88960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,052 DEBUG Processing 497/660 atomic regions from SNP 149061 to 149661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,102 DEBUG Processing 476/596 atomic regions from SNP 142630 to 143230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,118 DEBUG Processing 296/559 atomic regions from SNP 88660 to 89260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,121 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:56:59,257 DEBUG Processing 498/660 atomic regions from SNP 149361 to 149961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,302 DEBUG Processing 297/559 atomic regions from SNP 88960 to 89560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,340 DEBUG Processing 477/596 atomic regions from SNP 142930 to 143530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,466 DEBUG Processing 499/660 atomic regions from SNP 149661 to 150261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,492 DEBUG Processing 298/559 atomic regions from SNP 89260 to 89860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,576 DEBUG Processing 478/596 atomic regions from SNP 143230 to 143830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,671 DEBUG Processing 500/660 atomic regions from SNP 149961 to 150561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,680 DEBUG Processing 299/559 atomic regions from SNP 89560 to 90160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,817 DEBUG Processing 479/596 atomic regions from SNP 143530 to 144130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,872 DEBUG Processing 300/559 atomic regions from SNP 89860 to 90460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,879 DEBUG Processing 501/660 atomic regions from SNP 150261 to 150861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,061 DEBUG Processing 301/559 atomic regions from SNP 90160 to 90760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,064 DEBUG Processing 480/596 atomic regions from SNP 143830 to 144430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,081 DEBUG Processing 502/660 atomic regions from SNP 150561 to 151161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,245 DEBUG Processing 302/559 atomic regions from SNP 90460 to 91060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,277 DEBUG Processing 503/660 atomic regions from SNP 150861 to 151461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,300 DEBUG Processing 481/596 atomic regions from SNP 144130 to 144730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,430 DEBUG Processing 303/559 atomic regions from SNP 90760 to 91360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,481 DEBUG Processing 504/660 atomic regions from SNP 151161 to 151761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,516 DEBUG Processing 482/596 atomic regions from SNP 144430 to 145030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,612 DEBUG Processing 304/559 atomic regions from SNP 91060 to 91660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,677 DEBUG Processing 505/660 atomic regions from SNP 151461 to 152061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,727 DEBUG Processing 483/596 atomic regions from SNP 144730 to 145330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,792 DEBUG Processing 305/559 atomic regions from SNP 91360 to 91960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,874 DEBUG Processing 506/660 atomic regions from SNP 151761 to 152361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,932 DEBUG Processing 484/596 atomic regions from SNP 145030 to 145630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,974 DEBUG Processing 306/559 atomic regions from SNP 91660 to 92260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,071 DEBUG Processing 507/660 atomic regions from SNP 152061 to 152661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,151 DEBUG Processing 307/559 atomic regions from SNP 91960 to 92560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,164 DEBUG Processing 485/596 atomic regions from SNP 145330 to 145930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,267 DEBUG Processing 508/660 atomic regions from SNP 152361 to 152961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,330 DEBUG Processing 308/559 atomic regions from SNP 92260 to 92860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,397 DEBUG Processing 486/596 atomic regions from SNP 145630 to 146230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,474 DEBUG Processing 509/660 atomic regions from SNP 152661 to 153261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,519 DEBUG Processing 309/559 atomic regions from SNP 92560 to 93160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,633 DEBUG Processing 487/596 atomic regions from SNP 145930 to 146530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,674 DEBUG Processing 510/660 atomic regions from SNP 152961 to 153561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,702 DEBUG Processing 310/559 atomic regions from SNP 92860 to 93460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,854 DEBUG Processing 488/596 atomic regions from SNP 146230 to 146830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,874 DEBUG Processing 511/660 atomic regions from SNP 153261 to 153861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,894 DEBUG Processing 311/559 atomic regions from SNP 93160 to 93760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,069 DEBUG Processing 489/596 atomic regions from SNP 146530 to 147130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,077 DEBUG Processing 512/660 atomic regions from SNP 153561 to 154161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,083 DEBUG Processing 312/559 atomic regions from SNP 93460 to 94060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,287 DEBUG Processing 513/660 atomic regions from SNP 153861 to 154461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,289 DEBUG Processing 490/596 atomic regions from SNP 146830 to 147430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,303 DEBUG Processing 313/559 atomic regions from SNP 93760 to 94360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,493 DEBUG Processing 514/660 atomic regions from SNP 154161 to 154761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,502 DEBUG Processing 491/596 atomic regions from SNP 147130 to 147730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,516 DEBUG Processing 314/559 atomic regions from SNP 94060 to 94660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,692 DEBUG Processing 515/660 atomic regions from SNP 154461 to 155061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,701 DEBUG Processing 315/559 atomic regions from SNP 94360 to 94960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,712 DEBUG Processing 492/596 atomic regions from SNP 147430 to 148030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,899 DEBUG Processing 316/559 atomic regions from SNP 94660 to 95260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,910 DEBUG Processing 516/660 atomic regions from SNP 154761 to 155361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,924 DEBUG Processing 493/596 atomic regions from SNP 147730 to 148330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,080 DEBUG Processing 317/559 atomic regions from SNP 94960 to 95560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,108 DEBUG Processing 517/660 atomic regions from SNP 155061 to 155661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,128 DEBUG Processing 494/596 atomic regions from SNP 148030 to 148630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,262 DEBUG Processing 318/559 atomic regions from SNP 95260 to 95860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,304 DEBUG Processing 518/660 atomic regions from SNP 155361 to 155961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,333 DEBUG Processing 495/596 atomic regions from SNP 148330 to 148930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,447 DEBUG Processing 319/559 atomic regions from SNP 95560 to 96160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,501 DEBUG Processing 519/660 atomic regions from SNP 155661 to 156261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,533 DEBUG Processing 496/596 atomic regions from SNP 148630 to 149230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,631 DEBUG Processing 320/559 atomic regions from SNP 95860 to 96460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,701 DEBUG Processing 520/660 atomic regions from SNP 155961 to 156561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,734 DEBUG Processing 497/596 atomic regions from SNP 148930 to 149530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,831 DEBUG Processing 321/559 atomic regions from SNP 96160 to 96760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,902 DEBUG Processing 521/660 atomic regions from SNP 156261 to 156861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,940 DEBUG Processing 498/596 atomic regions from SNP 149230 to 149830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,018 DEBUG Processing 322/559 atomic regions from SNP 96460 to 97060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,100 DEBUG Processing 522/660 atomic regions from SNP 156561 to 157161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,141 DEBUG Processing 499/596 atomic regions from SNP 149530 to 150130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,204 DEBUG Processing 323/559 atomic regions from SNP 96760 to 97360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,300 DEBUG Processing 523/660 atomic regions from SNP 156861 to 157461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,342 DEBUG Processing 500/596 atomic regions from SNP 149830 to 150430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,388 DEBUG Processing 324/559 atomic regions from SNP 97060 to 97660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,493 DEBUG Processing 524/660 atomic regions from SNP 157161 to 157761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,542 DEBUG Processing 501/596 atomic regions from SNP 150130 to 150730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,575 DEBUG Processing 325/559 atomic regions from SNP 97360 to 97960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,624 DEBUG Subchromosome time: 196.9244537879713, subchromosome SNPs: 203503 2025-01-31 09:57:04,625 DEBUG Estimated BADs: [1.17, 21.02, 2.34, 21.02, 0.58, 23.36, 4.67, 0.39, 2.34, 7.01, 2.34, 4.67, 2.34, 11.68, 2.34, 4.67, 1.17, 7.01, 2.34, 4.67, 2.34, 0.78, 23.36, 0.58, 7.01, 1.17, 23.36, 1.17, 0.39, 2.34, 4.67, 2.34, 7.01, 2.34, 1.17, 7.01] SNP counts: [30523, 233, 766, 568, 1728, 620, 3037, 4382, 17622, 1324, 8550, 15637, 5029, 2283, 4382, 5498, 3062, 2076, 11094, 3290, 4494, 2637, 100, 4484, 1713, 3388, 88, 3189, 5098, 6848, 16903, 17715, 2339, 4797, 7098, 908] SNP IDs counts: [30523, 233, 766, 568, 1728, 620, 3037, 4382, 17622, 1324, 8550, 15637, 5029, 2283, 4382, 5498, 3062, 2076, 11094, 3290, 4494, 2637, 100, 4484, 1713, 3388, 88, 3189, 5098, 6848, 16903, 17715, 2339, 4797, 7098, 908] Critical gap: 597305bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 21.28Mbp, 21.71Mbp, 22.06Mbp, 23.28Mbp, 23.62Mbp, 25.27Mbp, 27.91Mbp, 37.82Mbp, 38.50Mbp, 43.13Mbp, 51.83Mbp, 54.50Mbp, 55.70Mbp, 58.00Mbp, 60.94Mbp, 63.28Mbp, 64.36Mbp, 72.27Mbp, 74.02Mbp, 76.60Mbp, 78.16Mbp, 78.21Mbp, 80.85Mbp, 81.78Mbp, 83.69Mbp, 83.74Mbp, 85.57Mbp, 88.75Mbp, 92.53Mbp, 101.69Mbp, 111.49Mbp, 112.73Mbp, 115.32Mbp, 119.36Mbp, 120.42Mbp] 2025-01-31 09:57:04,625 DEBUG chr13 time: 196.9250622629188 s 2025-01-31 09:57:04,683 DEBUG Processing 525/660 atomic regions from SNP 157461 to 158061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,746 DEBUG chr13: Fitting background model for 36 segments 2025-01-31 09:57:04,748 DEBUG Processing 502/596 atomic regions from SNP 150430 to 151030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,763 DEBUG Processing 326/559 atomic regions from SNP 97660 to 98260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,878 DEBUG Processing 526/660 atomic regions from SNP 157761 to 158361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,946 DEBUG Processing 327/559 atomic regions from SNP 97960 to 98560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,954 DEBUG Processing 503/596 atomic regions from SNP 150730 to 151330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,070 DEBUG Processing 527/660 atomic regions from SNP 158061 to 158661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,141 DEBUG Processing 328/559 atomic regions from SNP 98260 to 98860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,163 DEBUG Processing 504/596 atomic regions from SNP 151030 to 151630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,272 DEBUG Processing 528/660 atomic regions from SNP 158361 to 158961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,363 DEBUG Processing 329/559 atomic regions from SNP 98560 to 99160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,395 DEBUG Processing 505/596 atomic regions from SNP 151330 to 151930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,472 DEBUG Processing 529/660 atomic regions from SNP 158661 to 159261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,550 DEBUG Processing 330/559 atomic regions from SNP 98860 to 99460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,630 DEBUG Processing 506/596 atomic regions from SNP 151630 to 152230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,671 DEBUG Processing 530/660 atomic regions from SNP 158961 to 159561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,738 DEBUG Processing 331/559 atomic regions from SNP 99160 to 99760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,864 DEBUG Processing 507/596 atomic regions from SNP 151930 to 152530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,870 DEBUG Processing 531/660 atomic regions from SNP 159261 to 159861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,926 DEBUG Processing 332/559 atomic regions from SNP 99460 to 100060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,071 DEBUG Processing 532/660 atomic regions from SNP 159561 to 160161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,097 DEBUG Processing 508/596 atomic regions from SNP 152230 to 152830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,117 DEBUG Processing 333/559 atomic regions from SNP 99760 to 100360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,273 DEBUG Processing 533/660 atomic regions from SNP 159861 to 160461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,310 DEBUG Processing 334/559 atomic regions from SNP 100060 to 100660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,333 DEBUG Processing 509/596 atomic regions from SNP 152530 to 153130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,481 DEBUG Processing 534/660 atomic regions from SNP 160161 to 160761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,496 DEBUG Processing 335/559 atomic regions from SNP 100360 to 100960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,538 DEBUG Processing 510/596 atomic regions from SNP 152830 to 153430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,684 DEBUG Processing 535/660 atomic regions from SNP 160461 to 161061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,688 DEBUG Processing 336/559 atomic regions from SNP 100660 to 101260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,749 DEBUG Processing 511/596 atomic regions from SNP 153130 to 153730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,878 DEBUG Processing 337/559 atomic regions from SNP 100960 to 101560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,892 DEBUG Processing 536/660 atomic regions from SNP 160761 to 161361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,966 DEBUG Processing 512/596 atomic regions from SNP 153430 to 154030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,071 DEBUG Processing 338/559 atomic regions from SNP 101260 to 101860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,114 DEBUG Processing 537/660 atomic regions from SNP 161061 to 161661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,184 DEBUG Processing 513/596 atomic regions from SNP 153730 to 154330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,267 DEBUG Processing 339/559 atomic regions from SNP 101560 to 102160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,351 DEBUG Processing 538/660 atomic regions from SNP 161361 to 161961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,394 DEBUG Processing 514/596 atomic regions from SNP 154030 to 154630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,452 DEBUG Processing 340/559 atomic regions from SNP 101860 to 102460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,585 DEBUG Processing 539/660 atomic regions from SNP 161661 to 162261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,655 DEBUG Processing 515/596 atomic regions from SNP 154330 to 154930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,798 DEBUG Processing 341/559 atomic regions from SNP 102160 to 102760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,204 DEBUG Processing 516/596 atomic regions from SNP 154630 to 155230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,210 DEBUG Processing 540/660 atomic regions from SNP 161961 to 162561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,228 DEBUG Processing 342/559 atomic regions from SNP 102460 to 103060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,416 DEBUG Processing 517/596 atomic regions from SNP 154930 to 155530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,422 DEBUG Processing 541/660 atomic regions from SNP 162261 to 162861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,423 DEBUG Processing 343/559 atomic regions from SNP 102760 to 103360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,615 DEBUG Processing 344/559 atomic regions from SNP 103060 to 103660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,621 DEBUG Processing 518/596 atomic regions from SNP 155230 to 155830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,637 DEBUG Processing 542/660 atomic regions from SNP 162561 to 163161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,812 DEBUG Processing 345/559 atomic regions from SNP 103360 to 103960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,837 DEBUG Processing 519/596 atomic regions from SNP 155530 to 156130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,875 DEBUG Processing 543/660 atomic regions from SNP 162861 to 163461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,093 DEBUG Processing 346/559 atomic regions from SNP 103660 to 104260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,129 DEBUG Processing 520/596 atomic regions from SNP 155830 to 156430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,198 DEBUG Processing 544/660 atomic regions from SNP 163161 to 163761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,281 DEBUG Processing 347/559 atomic regions from SNP 103960 to 104560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,341 DEBUG Processing 521/596 atomic regions from SNP 156130 to 156730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,415 DEBUG Processing 545/660 atomic regions from SNP 163461 to 164061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,473 DEBUG Processing 348/559 atomic regions from SNP 104260 to 104860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,556 DEBUG Processing 522/596 atomic regions from SNP 156430 to 157030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,640 DEBUG Processing 546/660 atomic regions from SNP 163761 to 164361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,668 DEBUG Processing 349/559 atomic regions from SNP 104560 to 105160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,762 DEBUG Processing 523/596 atomic regions from SNP 156730 to 157330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,863 DEBUG Processing 350/559 atomic regions from SNP 104860 to 105460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,873 DEBUG Processing 547/660 atomic regions from SNP 164061 to 164661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,964 DEBUG Processing 524/596 atomic regions from SNP 157030 to 157630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,054 DEBUG Processing 351/559 atomic regions from SNP 105160 to 105760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,105 DEBUG Processing 548/660 atomic regions from SNP 164361 to 164961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,170 DEBUG Processing 525/596 atomic regions from SNP 157330 to 157930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,241 DEBUG Processing 352/559 atomic regions from SNP 105460 to 106060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,325 DEBUG Processing 549/660 atomic regions from SNP 164661 to 165261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,368 DEBUG Processing 526/596 atomic regions from SNP 157630 to 158230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,423 DEBUG Processing 353/559 atomic regions from SNP 105760 to 106360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,526 DEBUG Processing 550/660 atomic regions from SNP 164961 to 165561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,566 DEBUG Processing 527/596 atomic regions from SNP 157930 to 158530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,601 DEBUG Processing 354/559 atomic regions from SNP 106060 to 106660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,724 DEBUG Processing 551/660 atomic regions from SNP 165261 to 165861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,764 DEBUG Processing 528/596 atomic regions from SNP 158230 to 158830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,780 DEBUG Processing 355/559 atomic regions from SNP 106360 to 106960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,925 DEBUG Processing 552/660 atomic regions from SNP 165561 to 166161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,963 DEBUG Processing 529/596 atomic regions from SNP 158530 to 159130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,967 DEBUG Processing 356/559 atomic regions from SNP 106660 to 107260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,134 DEBUG Processing 553/660 atomic regions from SNP 165861 to 166461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,154 DEBUG Processing 357/559 atomic regions from SNP 106960 to 107560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,162 DEBUG Processing 530/596 atomic regions from SNP 158830 to 159430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,339 DEBUG Processing 358/559 atomic regions from SNP 107260 to 107860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,356 DEBUG Processing 554/660 atomic regions from SNP 166161 to 166761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,361 DEBUG Processing 531/596 atomic regions from SNP 159130 to 159730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,519 DEBUG Processing 359/559 atomic regions from SNP 107560 to 108160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,550 DEBUG Processing 555/660 atomic regions from SNP 166461 to 167061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,566 DEBUG Processing 532/596 atomic regions from SNP 159430 to 160030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,697 DEBUG Processing 360/559 atomic regions from SNP 107860 to 108460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,758 DEBUG Processing 556/660 atomic regions from SNP 166761 to 167361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,774 DEBUG Processing 533/596 atomic regions from SNP 159730 to 160330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,882 DEBUG Processing 361/559 atomic regions from SNP 108160 to 108760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,980 DEBUG Processing 557/660 atomic regions from SNP 167061 to 167661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,996 DEBUG Processing 534/596 atomic regions from SNP 160030 to 160630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,069 DEBUG Processing 362/559 atomic regions from SNP 108460 to 109060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,196 DEBUG Processing 535/596 atomic regions from SNP 160330 to 160930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,206 DEBUG Processing 558/660 atomic regions from SNP 167361 to 167961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,281 DEBUG Processing 363/559 atomic regions from SNP 108760 to 109360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,396 DEBUG Processing 536/596 atomic regions from SNP 160630 to 161230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,427 DEBUG Processing 559/660 atomic regions from SNP 167661 to 168261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,472 DEBUG Processing 364/559 atomic regions from SNP 109060 to 109660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,596 DEBUG Processing 537/596 atomic regions from SNP 160930 to 161530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,626 DEBUG Processing 560/660 atomic regions from SNP 167961 to 168561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,654 DEBUG Processing 365/559 atomic regions from SNP 109360 to 109960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,792 DEBUG Processing 538/596 atomic regions from SNP 161230 to 161830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,822 DEBUG Processing 561/660 atomic regions from SNP 168261 to 168861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,833 DEBUG Processing 366/559 atomic regions from SNP 109660 to 110260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,989 DEBUG Processing 539/596 atomic regions from SNP 161530 to 162130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,014 DEBUG Processing 367/559 atomic regions from SNP 109960 to 110560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,038 DEBUG Processing 562/660 atomic regions from SNP 168561 to 169161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,194 DEBUG Processing 540/596 atomic regions from SNP 161830 to 162430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,198 DEBUG Processing 368/559 atomic regions from SNP 110260 to 110860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,259 DEBUG Processing 563/660 atomic regions from SNP 168861 to 169461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,377 DEBUG Processing 369/559 atomic regions from SNP 110560 to 111160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,394 DEBUG Processing 541/596 atomic regions from SNP 162130 to 162730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,454 DEBUG Processing 564/660 atomic regions from SNP 169161 to 169761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,560 DEBUG Processing 370/559 atomic regions from SNP 110860 to 111460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,596 DEBUG Processing 542/596 atomic regions from SNP 162430 to 163030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,648 DEBUG Processing 565/660 atomic regions from SNP 169461 to 170061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,745 DEBUG Processing 371/559 atomic regions from SNP 111160 to 111760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,803 DEBUG Processing 543/596 atomic regions from SNP 162730 to 163330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,846 DEBUG Processing 566/660 atomic regions from SNP 169761 to 170361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,928 DEBUG Processing 372/559 atomic regions from SNP 111460 to 112060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,007 DEBUG Processing 544/596 atomic regions from SNP 163030 to 163630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,044 DEBUG Processing 567/660 atomic regions from SNP 170061 to 170661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,120 DEBUG Processing 373/559 atomic regions from SNP 111760 to 112360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,224 DEBUG Processing 545/596 atomic regions from SNP 163330 to 163930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,244 DEBUG Processing 568/660 atomic regions from SNP 170361 to 170961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,300 DEBUG Processing 374/559 atomic regions from SNP 112060 to 112660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,426 DEBUG Processing 546/596 atomic regions from SNP 163630 to 164230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,445 DEBUG Processing 569/660 atomic regions from SNP 170661 to 171261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,481 DEBUG Processing 375/559 atomic regions from SNP 112360 to 112960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,628 DEBUG Processing 547/596 atomic regions from SNP 163930 to 164530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,644 DEBUG Processing 570/660 atomic regions from SNP 170961 to 171561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,664 DEBUG Processing 376/559 atomic regions from SNP 112660 to 113260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,839 DEBUG Processing 548/596 atomic regions from SNP 164230 to 164830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,851 DEBUG Processing 377/559 atomic regions from SNP 112960 to 113560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,858 DEBUG Processing 571/660 atomic regions from SNP 171261 to 171861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,039 DEBUG Processing 378/559 atomic regions from SNP 113260 to 113860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,050 DEBUG Processing 549/596 atomic regions from SNP 164530 to 165130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,090 DEBUG Processing 572/660 atomic regions from SNP 171561 to 172161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,223 DEBUG Processing 379/559 atomic regions from SNP 113560 to 114160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,276 DEBUG Processing 550/596 atomic regions from SNP 164830 to 165430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,311 DEBUG Processing 573/660 atomic regions from SNP 171861 to 172461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,495 DEBUG Processing 380/559 atomic regions from SNP 113860 to 114460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,578 DEBUG Processing 574/660 atomic regions from SNP 172161 to 172761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,616 DEBUG Processing 551/596 atomic regions from SNP 165130 to 165730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,671 DEBUG Processing 381/559 atomic regions from SNP 114160 to 114760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,693 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:57:15,694 DEBUG chr17: Signal quantile: 0.989. signal threshold: 17. Best RMSEA: 0.014 2025-01-31 09:57:15,791 DEBUG Processing 575/660 atomic regions from SNP 172461 to 173061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,831 DEBUG Processing 552/596 atomic regions from SNP 165430 to 166030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,852 DEBUG Processing 382/559 atomic regions from SNP 114460 to 115060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,014 DEBUG Processing 576/660 atomic regions from SNP 172761 to 173361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,033 DEBUG Processing 383/559 atomic regions from SNP 114760 to 115360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,054 DEBUG Processing 553/596 atomic regions from SNP 165730 to 166330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,227 DEBUG Processing 384/559 atomic regions from SNP 115060 to 115660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,248 DEBUG Processing 577/660 atomic regions from SNP 173061 to 173661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,271 DEBUG Processing 554/596 atomic regions from SNP 166030 to 166630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,418 DEBUG Processing 385/559 atomic regions from SNP 115360 to 115960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,477 DEBUG Processing 555/596 atomic regions from SNP 166330 to 166930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,480 DEBUG Processing 578/660 atomic regions from SNP 173361 to 173961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,603 DEBUG Processing 386/559 atomic regions from SNP 115660 to 116260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,681 DEBUG Processing 556/596 atomic regions from SNP 166630 to 167230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,702 DEBUG Processing 579/660 atomic regions from SNP 173661 to 174261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,792 DEBUG Processing 387/559 atomic regions from SNP 115960 to 116560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,886 DEBUG Processing 557/596 atomic regions from SNP 166930 to 167530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,903 DEBUG Processing 580/660 atomic regions from SNP 173961 to 174561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,979 DEBUG Processing 388/559 atomic regions from SNP 116260 to 116860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,097 DEBUG Processing 558/596 atomic regions from SNP 167230 to 167830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,117 DEBUG Processing 581/660 atomic regions from SNP 174261 to 174861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,207 DEBUG Processing 389/559 atomic regions from SNP 116560 to 117160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,456 DEBUG Processing 559/596 atomic regions from SNP 167530 to 168130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,459 DEBUG Processing 582/660 atomic regions from SNP 174561 to 175161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,463 DEBUG Processing 390/559 atomic regions from SNP 116860 to 117460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,605 DEBUG chr17 total SNP count: 159576 2025-01-31 09:57:17,605 DEBUG chr17 length: 94987271 2025-01-31 09:57:17,605 DEBUG ----------------------------------------- 2025-01-31 09:57:17,605 INFO Processing SNPs in chr17 2025-01-31 09:57:17,667 DEBUG Processing 391/559 atomic regions from SNP 117160 to 117760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,681 DEBUG Processing 583/660 atomic regions from SNP 174861 to 175461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,693 DEBUG Processing 560/596 atomic regions from SNP 167830 to 168430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,761 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 159576)] 2025-01-31 09:57:17,856 DEBUG Processing 392/559 atomic regions from SNP 117460 to 118060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,868 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:17,882 DEBUG Processing 584/660 atomic regions from SNP 175161 to 175761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,905 DEBUG Processing 561/596 atomic regions from SNP 168130 to 168730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,038 DEBUG Processing 393/559 atomic regions from SNP 117760 to 118360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,079 DEBUG Processing 585/660 atomic regions from SNP 175461 to 176061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,122 DEBUG Processing 562/596 atomic regions from SNP 168430 to 169030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,218 DEBUG Processing 394/559 atomic regions from SNP 118060 to 118660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,277 DEBUG Processing 586/660 atomic regions from SNP 175761 to 176361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,328 DEBUG Processing 563/596 atomic regions from SNP 168730 to 169330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,399 DEBUG Processing 395/559 atomic regions from SNP 118360 to 118960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,476 DEBUG Processing 587/660 atomic regions from SNP 176061 to 176661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,546 DEBUG Processing 564/596 atomic regions from SNP 169030 to 169630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,580 DEBUG Processing 396/559 atomic regions from SNP 118660 to 119260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,671 DEBUG Processing 588/660 atomic regions from SNP 176361 to 176961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,759 DEBUG Processing 397/559 atomic regions from SNP 118960 to 119560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,783 DEBUG Processing 565/596 atomic regions from SNP 169330 to 169930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,877 DEBUG Processing 589/660 atomic regions from SNP 176661 to 177261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,993 DEBUG Processing 398/559 atomic regions from SNP 119260 to 119860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,154 DEBUG Processing 566/596 atomic regions from SNP 169630 to 170230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,181 DEBUG Processing 590/660 atomic regions from SNP 176961 to 177561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,262 DEBUG Processing 399/559 atomic regions from SNP 119560 to 120160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,402 DEBUG Processing 591/660 atomic regions from SNP 177261 to 177861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,421 DEBUG Processing 567/596 atomic regions from SNP 169930 to 170530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,452 DEBUG Processing 400/559 atomic regions from SNP 119860 to 120460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,609 DEBUG Processing 592/660 atomic regions from SNP 177561 to 178161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,635 DEBUG Processing 401/559 atomic regions from SNP 120160 to 120760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,661 DEBUG Processing 568/596 atomic regions from SNP 170230 to 170830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,817 DEBUG Processing 593/660 atomic regions from SNP 177861 to 178461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,822 DEBUG Processing 402/559 atomic regions from SNP 120460 to 121060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,894 DEBUG Processing 569/596 atomic regions from SNP 170530 to 171130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,011 DEBUG Processing 403/559 atomic regions from SNP 120760 to 121360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,023 DEBUG Processing 594/660 atomic regions from SNP 178161 to 178761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,128 DEBUG Processing 570/596 atomic regions from SNP 170830 to 171430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,196 DEBUG Processing 404/559 atomic regions from SNP 121060 to 121660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,224 DEBUG Processing 595/660 atomic regions from SNP 178461 to 179061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,354 DEBUG Processing 571/596 atomic regions from SNP 171130 to 171730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,380 DEBUG Processing 405/559 atomic regions from SNP 121360 to 121960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,445 DEBUG Processing 596/660 atomic regions from SNP 178761 to 179361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,558 DEBUG Processing 406/559 atomic regions from SNP 121660 to 122260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,586 DEBUG Processing 572/596 atomic regions from SNP 171430 to 172030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,665 DEBUG Processing 597/660 atomic regions from SNP 179061 to 179661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,735 DEBUG Processing 407/559 atomic regions from SNP 121960 to 122560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,800 DEBUG Processing 573/596 atomic regions from SNP 171730 to 172330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,866 DEBUG Processing 598/660 atomic regions from SNP 179361 to 179961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,913 DEBUG Processing 408/559 atomic regions from SNP 122260 to 122860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,015 DEBUG Processing 574/596 atomic regions from SNP 172030 to 172630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,062 DEBUG Processing 599/660 atomic regions from SNP 179661 to 180261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,092 DEBUG Processing 409/559 atomic regions from SNP 122560 to 123160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,223 DEBUG Processing 575/596 atomic regions from SNP 172330 to 172930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,259 DEBUG Processing 600/660 atomic regions from SNP 179961 to 180561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,274 DEBUG Processing 410/559 atomic regions from SNP 122860 to 123460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,455 DEBUG Processing 576/596 atomic regions from SNP 172630 to 173230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,461 DEBUG Processing 601/660 atomic regions from SNP 180261 to 180861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,463 DEBUG Processing 411/559 atomic regions from SNP 123160 to 123760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,648 DEBUG Processing 412/559 atomic regions from SNP 123460 to 124060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,661 DEBUG Processing 602/660 atomic regions from SNP 180561 to 181161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,690 DEBUG Processing 577/596 atomic regions from SNP 172930 to 173530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,839 DEBUG Processing 413/559 atomic regions from SNP 123760 to 124360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,866 DEBUG Processing 603/660 atomic regions from SNP 180861 to 181461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,920 DEBUG Processing 578/596 atomic regions from SNP 173230 to 173830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,022 DEBUG Processing 414/559 atomic regions from SNP 124060 to 124660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,064 DEBUG Processing 604/660 atomic regions from SNP 181161 to 181761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,129 DEBUG Processing 579/596 atomic regions from SNP 173530 to 174130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,207 DEBUG Processing 415/559 atomic regions from SNP 124360 to 124960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,263 DEBUG Processing 605/660 atomic regions from SNP 181461 to 182061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,330 DEBUG Processing 580/596 atomic regions from SNP 173830 to 174430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,394 DEBUG Processing 416/559 atomic regions from SNP 124660 to 125260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,491 DEBUG Processing 606/660 atomic regions from SNP 181761 to 182361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,559 DEBUG Processing 581/596 atomic regions from SNP 174130 to 174730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,571 DEBUG Processing 417/559 atomic regions from SNP 124960 to 125560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,722 DEBUG Processing 607/660 atomic regions from SNP 182061 to 182661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,751 DEBUG Processing 418/559 atomic regions from SNP 125260 to 125860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,792 DEBUG Processing 582/596 atomic regions from SNP 174430 to 175030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,934 DEBUG Processing 419/559 atomic regions from SNP 125560 to 126160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,953 DEBUG Processing 608/660 atomic regions from SNP 182361 to 182961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,009 DEBUG Processing 583/596 atomic regions from SNP 174730 to 175330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,117 DEBUG Processing 420/559 atomic regions from SNP 125860 to 126460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,187 DEBUG Processing 609/660 atomic regions from SNP 182661 to 183261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,204 DEBUG Processing 584/596 atomic regions from SNP 175030 to 175630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,300 DEBUG Processing 421/559 atomic regions from SNP 126160 to 126760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,405 DEBUG Processing 585/596 atomic regions from SNP 175330 to 175930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,422 DEBUG Processing 610/660 atomic regions from SNP 182961 to 183561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,479 DEBUG Processing 422/559 atomic regions from SNP 126460 to 127060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,615 DEBUG Processing 586/596 atomic regions from SNP 175630 to 176230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,642 DEBUG Processing 611/660 atomic regions from SNP 183261 to 183861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,662 DEBUG Processing 423/559 atomic regions from SNP 126760 to 127360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,843 DEBUG Processing 587/596 atomic regions from SNP 175930 to 176530 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,846 DEBUG Processing 424/559 atomic regions from SNP 127060 to 127660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,873 DEBUG Processing 612/660 atomic regions from SNP 183561 to 184161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,029 DEBUG Processing 425/559 atomic regions from SNP 127360 to 127960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,075 DEBUG Processing 588/596 atomic regions from SNP 176230 to 176830 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,101 DEBUG Processing 613/660 atomic regions from SNP 183861 to 184461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,204 DEBUG Processing 426/559 atomic regions from SNP 127660 to 128260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,309 DEBUG Processing 589/596 atomic regions from SNP 176530 to 177130 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,333 DEBUG Processing 614/660 atomic regions from SNP 184161 to 184761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,383 DEBUG Processing 427/559 atomic regions from SNP 127960 to 128560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,529 DEBUG Processing 590/596 atomic regions from SNP 176830 to 177430 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,563 DEBUG Processing 428/559 atomic regions from SNP 128260 to 128860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,566 DEBUG Processing 615/660 atomic regions from SNP 184461 to 185061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,744 DEBUG Processing 591/596 atomic regions from SNP 177130 to 177730 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,746 DEBUG Processing 429/559 atomic regions from SNP 128560 to 129160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,782 DEBUG Processing 616/660 atomic regions from SNP 184761 to 185361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,925 DEBUG Processing 430/559 atomic regions from SNP 128860 to 129460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,948 DEBUG Processing 592/596 atomic regions from SNP 177430 to 178030 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,002 DEBUG Processing 617/660 atomic regions from SNP 185061 to 185661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,105 DEBUG Processing 431/559 atomic regions from SNP 129160 to 129760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,166 DEBUG Processing 593/596 atomic regions from SNP 177730 to 178330 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,215 DEBUG Processing 618/660 atomic regions from SNP 185361 to 185961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,280 DEBUG Processing 432/559 atomic regions from SNP 129460 to 130060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,400 DEBUG Processing 594/596 atomic regions from SNP 178030 to 178630 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,441 DEBUG Processing 619/660 atomic regions from SNP 185661 to 186261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,458 DEBUG Processing 433/559 atomic regions from SNP 129760 to 130360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,631 DEBUG Processing 595/596 atomic regions from SNP 178330 to 178930 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,636 DEBUG Processing 434/559 atomic regions from SNP 130060 to 130660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,668 DEBUG Processing 620/660 atomic regions from SNP 185961 to 186561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,817 DEBUG Processing 435/559 atomic regions from SNP 130360 to 130960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,829 DEBUG Processing 596/596 atomic regions from SNP 178630 to 179230 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,898 DEBUG Processing 621/660 atomic regions from SNP 186261 to 186861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,958 DEBUG Unique SNPs positions in subchromosome 1: 179231 2025-01-31 09:57:25,997 DEBUG Processing 436/559 atomic regions from SNP 130660 to 131260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,127 DEBUG Processing 622/660 atomic regions from SNP 186561 to 187161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,173 DEBUG Processing 437/559 atomic regions from SNP 130960 to 131560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,353 DEBUG Processing 438/559 atomic regions from SNP 131260 to 131860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,362 DEBUG Processing 623/660 atomic regions from SNP 186861 to 187461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,529 DEBUG Processing 439/559 atomic regions from SNP 131560 to 132160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,581 DEBUG Processing 624/660 atomic regions from SNP 187161 to 187761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,706 DEBUG Processing 440/559 atomic regions from SNP 131860 to 132460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,771 DEBUG Processing 625/660 atomic regions from SNP 187461 to 188061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,883 DEBUG Processing 441/559 atomic regions from SNP 132160 to 132760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,963 DEBUG Processing 626/660 atomic regions from SNP 187761 to 188361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,060 DEBUG Processing 442/559 atomic regions from SNP 132460 to 133060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,158 DEBUG Processing 627/660 atomic regions from SNP 188061 to 188661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,237 DEBUG Processing 443/559 atomic regions from SNP 132760 to 133360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,351 DEBUG Processing 628/660 atomic regions from SNP 188361 to 188961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,411 DEBUG Processing 444/559 atomic regions from SNP 133060 to 133660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,544 DEBUG Processing 629/660 atomic regions from SNP 188661 to 189261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,588 DEBUG Processing 445/559 atomic regions from SNP 133360 to 133960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,738 DEBUG Processing 630/660 atomic regions from SNP 188961 to 189561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,768 DEBUG Processing 446/559 atomic regions from SNP 133660 to 134260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,939 DEBUG Processing 631/660 atomic regions from SNP 189261 to 189861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,950 DEBUG Processing 447/559 atomic regions from SNP 133960 to 134560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,130 DEBUG Processing 448/559 atomic regions from SNP 134260 to 134860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,135 DEBUG Processing 632/660 atomic regions from SNP 189561 to 190161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,314 DEBUG Processing 449/559 atomic regions from SNP 134560 to 135160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,337 DEBUG Processing 633/660 atomic regions from SNP 189861 to 190461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,490 DEBUG Processing 450/559 atomic regions from SNP 134860 to 135460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,530 DEBUG Processing 634/660 atomic regions from SNP 190161 to 190761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,665 DEBUG Processing 451/559 atomic regions from SNP 135160 to 135760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,724 DEBUG Processing 635/660 atomic regions from SNP 190461 to 191061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,842 DEBUG Processing 452/559 atomic regions from SNP 135460 to 136060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,915 DEBUG Processing 636/660 atomic regions from SNP 190761 to 191361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,022 DEBUG Processing 453/559 atomic regions from SNP 135760 to 136360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,106 DEBUG Processing 637/660 atomic regions from SNP 191061 to 191661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,200 DEBUG Processing 454/559 atomic regions from SNP 136060 to 136660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,298 DEBUG Processing 638/660 atomic regions from SNP 191361 to 191961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,375 DEBUG Processing 455/559 atomic regions from SNP 136360 to 136960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,509 DEBUG Processing 639/660 atomic regions from SNP 191661 to 192261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,552 DEBUG Processing 456/559 atomic regions from SNP 136660 to 137260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,722 DEBUG Processing 640/660 atomic regions from SNP 191961 to 192561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,729 DEBUG Processing 457/559 atomic regions from SNP 136960 to 137560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,913 DEBUG Processing 458/559 atomic regions from SNP 137260 to 137860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,920 DEBUG Processing 641/660 atomic regions from SNP 192261 to 192861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,094 DEBUG Processing 459/559 atomic regions from SNP 137560 to 138160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,118 DEBUG Processing 642/660 atomic regions from SNP 192561 to 193161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,278 DEBUG Processing 460/559 atomic regions from SNP 137860 to 138460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,321 DEBUG Processing 643/660 atomic regions from SNP 192861 to 193461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,464 DEBUG Processing 461/559 atomic regions from SNP 138160 to 138760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,523 DEBUG Processing 644/660 atomic regions from SNP 193161 to 193761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,641 DEBUG Processing 462/559 atomic regions from SNP 138460 to 139060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,728 DEBUG Processing 645/660 atomic regions from SNP 193461 to 194061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,820 DEBUG Processing 463/559 atomic regions from SNP 138760 to 139360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,926 DEBUG Processing 646/660 atomic regions from SNP 193761 to 194361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,999 DEBUG Processing 464/559 atomic regions from SNP 139060 to 139660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,118 DEBUG Processing 647/660 atomic regions from SNP 194061 to 194661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,178 DEBUG Processing 465/559 atomic regions from SNP 139360 to 139960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,319 DEBUG Processing 648/660 atomic regions from SNP 194361 to 194961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,371 DEBUG Processing 466/559 atomic regions from SNP 139660 to 140260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,532 DEBUG Processing 649/660 atomic regions from SNP 194661 to 195261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,550 DEBUG Processing 467/559 atomic regions from SNP 139960 to 140560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,729 DEBUG Processing 468/559 atomic regions from SNP 140260 to 140860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,735 DEBUG Processing 650/660 atomic regions from SNP 194961 to 195561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,909 DEBUG Processing 469/559 atomic regions from SNP 140560 to 141160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,930 DEBUG Processing 651/660 atomic regions from SNP 195261 to 195861 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,090 DEBUG Processing 470/559 atomic regions from SNP 140860 to 141460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,152 DEBUG Processing 652/660 atomic regions from SNP 195561 to 196161 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,267 DEBUG Processing 471/559 atomic regions from SNP 141160 to 141760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,352 DEBUG Processing 653/660 atomic regions from SNP 195861 to 196461 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,445 DEBUG Processing 472/559 atomic regions from SNP 141460 to 142060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,545 DEBUG Processing 654/660 atomic regions from SNP 196161 to 196761 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,621 DEBUG Processing 473/559 atomic regions from SNP 141760 to 142360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,736 DEBUG Processing 655/660 atomic regions from SNP 196461 to 197061 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,799 DEBUG Processing 474/559 atomic regions from SNP 142060 to 142660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,929 DEBUG Processing 656/660 atomic regions from SNP 196761 to 197361 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,981 DEBUG Processing 475/559 atomic regions from SNP 142360 to 142960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,123 DEBUG Processing 657/660 atomic regions from SNP 197061 to 197661 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,161 DEBUG Processing 476/559 atomic regions from SNP 142660 to 143260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,314 DEBUG Processing 658/660 atomic regions from SNP 197361 to 197961 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,339 DEBUG Processing 477/559 atomic regions from SNP 142960 to 143560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,506 DEBUG Processing 659/660 atomic regions from SNP 197661 to 198261 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,518 DEBUG Processing 478/559 atomic regions from SNP 143260 to 143860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,702 DEBUG Processing 660/660 atomic regions from SNP 197961 to 198561 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,716 DEBUG Processing 479/559 atomic regions from SNP 143560 to 144160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,820 DEBUG Unique SNPs positions in subchromosome 1: 198562 2025-01-31 09:57:33,899 DEBUG Processing 480/559 atomic regions from SNP 143860 to 144460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,077 DEBUG Processing 481/559 atomic regions from SNP 144160 to 144760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,251 DEBUG Processing 482/559 atomic regions from SNP 144460 to 145060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,426 DEBUG Processing 483/559 atomic regions from SNP 144760 to 145360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,599 DEBUG Processing 484/559 atomic regions from SNP 145060 to 145660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,773 DEBUG Processing 485/559 atomic regions from SNP 145360 to 145960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,945 DEBUG Processing 486/559 atomic regions from SNP 145660 to 146260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,119 DEBUG Processing 487/559 atomic regions from SNP 145960 to 146560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,293 DEBUG Processing 488/559 atomic regions from SNP 146260 to 146860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,468 DEBUG Processing 489/559 atomic regions from SNP 146560 to 147160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,643 DEBUG Processing 490/559 atomic regions from SNP 146860 to 147460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,819 DEBUG Processing 491/559 atomic regions from SNP 147160 to 147760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,992 DEBUG Processing 492/559 atomic regions from SNP 147460 to 148060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,164 DEBUG Processing 493/559 atomic regions from SNP 147760 to 148360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,355 DEBUG Processing 494/559 atomic regions from SNP 148060 to 148660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,550 DEBUG Processing 495/559 atomic regions from SNP 148360 to 148960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,709 DEBUG Segmenting atomic regions: 2025-01-31 09:57:36,743 DEBUG Processing 496/559 atomic regions from SNP 148660 to 149260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,775 DEBUG Processing 1/530 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:36,925 DEBUG Processing 497/559 atomic regions from SNP 148960 to 149560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,964 DEBUG Processing 2/530 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,101 DEBUG Processing 498/559 atomic regions from SNP 149260 to 149860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,155 DEBUG Processing 3/530 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,278 DEBUG Processing 499/559 atomic regions from SNP 149560 to 150160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,342 DEBUG Processing 4/530 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,454 DEBUG Processing 500/559 atomic regions from SNP 149860 to 150460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,532 DEBUG Processing 5/530 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,633 DEBUG Processing 501/559 atomic regions from SNP 150160 to 150760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,716 DEBUG Processing 6/530 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,812 DEBUG Processing 502/559 atomic regions from SNP 150460 to 151060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,899 DEBUG Processing 7/530 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:37,996 DEBUG Processing 503/559 atomic regions from SNP 150760 to 151360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,087 DEBUG Processing 8/530 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,172 DEBUG Processing 504/559 atomic regions from SNP 151060 to 151660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,276 DEBUG Processing 9/530 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,350 DEBUG Processing 505/559 atomic regions from SNP 151360 to 151960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,467 DEBUG Processing 10/530 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,527 DEBUG Processing 506/559 atomic regions from SNP 151660 to 152260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,657 DEBUG Processing 11/530 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,702 DEBUG Processing 507/559 atomic regions from SNP 151960 to 152560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,848 DEBUG Processing 12/530 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:38,879 DEBUG Processing 508/559 atomic regions from SNP 152260 to 152860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,041 DEBUG Processing 13/530 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,078 DEBUG Processing 509/559 atomic regions from SNP 152560 to 153160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,234 DEBUG Processing 14/530 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,280 DEBUG Processing 510/559 atomic regions from SNP 152860 to 153460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,427 DEBUG Processing 15/530 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,490 DEBUG Processing 511/559 atomic regions from SNP 153160 to 153760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,558 DEBUG Subchromosome time: 176.51693518809043, subchromosome SNPs: 179231 2025-01-31 09:57:39,559 DEBUG Estimated BADs: [3.12, 6.24, 12.48, 3.12, 0.45, 3.12, 0.62, 3.12, 0.62, 3.12, 0.78, 3.12, 0.62, 3.12, 0.35, 1.04, 3.12, 1.56, 0.45, 1.56, 18.72, 3.12, 12.48, 6.24, 3.12, 9.36, 0.78, 3.12, 9.36, 1.56] SNP counts: [3398, 5337, 9744, 16917, 3828, 975, 2021, 1805, 5078, 1226, 2977, 16263, 2339, 1517, 8392, 12298, 5101, 16014, 5296, 1517, 245, 4838, 11999, 6304, 5970, 1530, 4202, 12035, 9271, 794] SNP IDs counts: [3398, 5337, 9744, 16917, 3828, 975, 2021, 1805, 5078, 1226, 2977, 16263, 2339, 1517, 8392, 12298, 5101, 16014, 5296, 1517, 245, 4838, 11999, 6304, 5970, 1530, 4202, 12035, 9271, 794] Critical gap: 547255bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.09Mbp, 13.46Mbp, 23.16Mbp, 25.49Mbp, 25.99Mbp, 27.14Mbp, 28.11Mbp, 31.09Mbp, 31.75Mbp, 33.49Mbp, 42.68Mbp, 44.06Mbp, 44.93Mbp, 50.13Mbp, 57.17Mbp, 59.94Mbp, 69.15Mbp, 72.25Mbp, 73.06Mbp, 73.19Mbp, 75.86Mbp, 82.26Mbp, 85.66Mbp, 88.81Mbp, 89.63Mbp, 91.97Mbp, 98.50Mbp, 103.39Mbp, 104.04Mbp] 2025-01-31 09:57:39,559 DEBUG chr15 time: 176.5174055910902 s 2025-01-31 09:57:39,630 DEBUG Processing 16/530 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,657 DEBUG chr15: Fitting background model for 30 segments 2025-01-31 09:57:39,690 DEBUG Processing 512/559 atomic regions from SNP 153460 to 154060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,819 DEBUG Processing 17/530 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:39,876 DEBUG Processing 513/559 atomic regions from SNP 153760 to 154360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,022 DEBUG Processing 18/530 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,068 DEBUG Processing 514/559 atomic regions from SNP 154060 to 154660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,228 DEBUG Processing 19/530 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,279 DEBUG Processing 515/559 atomic regions from SNP 154360 to 154960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,437 DEBUG Processing 20/530 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,492 DEBUG Processing 516/559 atomic regions from SNP 154660 to 155260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,633 DEBUG Processing 21/530 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,692 DEBUG Processing 517/559 atomic regions from SNP 154960 to 155560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,847 DEBUG Processing 22/530 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:40,892 DEBUG Processing 518/559 atomic regions from SNP 155260 to 155860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,043 DEBUG Processing 23/530 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,108 DEBUG Processing 519/559 atomic regions from SNP 155560 to 156160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,244 DEBUG Processing 24/530 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,324 DEBUG Processing 520/559 atomic regions from SNP 155860 to 156460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,442 DEBUG Processing 25/530 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,540 DEBUG Processing 521/559 atomic regions from SNP 156160 to 156760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,645 DEBUG Processing 26/530 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,754 DEBUG Processing 522/559 atomic regions from SNP 156460 to 157060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,844 DEBUG Processing 27/530 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:41,964 DEBUG Processing 523/559 atomic regions from SNP 156760 to 157360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,051 DEBUG Processing 28/530 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,167 DEBUG Processing 524/559 atomic regions from SNP 157060 to 157660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,248 DEBUG Processing 29/530 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,383 DEBUG Processing 525/559 atomic regions from SNP 157360 to 157960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,448 DEBUG Processing 30/530 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,597 DEBUG Processing 526/559 atomic regions from SNP 157660 to 158260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,643 DEBUG Processing 31/530 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:42,805 DEBUG Processing 527/559 atomic regions from SNP 157960 to 158560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,845 DEBUG Processing 32/530 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,011 DEBUG Processing 528/559 atomic regions from SNP 158260 to 158860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,042 DEBUG Processing 33/530 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,195 DEBUG Processing 529/559 atomic regions from SNP 158560 to 159160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,237 DEBUG Processing 34/530 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,385 DEBUG Processing 530/559 atomic regions from SNP 158860 to 159460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,430 DEBUG Processing 35/530 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,569 DEBUG Processing 531/559 atomic regions from SNP 159160 to 159760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,622 DEBUG Processing 36/530 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,762 DEBUG Processing 532/559 atomic regions from SNP 159460 to 160060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,826 DEBUG Processing 37/530 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:43,858 DEBUG Subchromosome time: 183.1499527299311, subchromosome SNPs: 198562 2025-01-31 09:57:43,858 DEBUG Estimated BADs: [4.12, 0.52, 2.06, 1.03, 4.12, 2.06, 8.25, 2.06, 0.41, 1.03, 0.34, 2.06, 0.41, 2.06, 0.52, 4.12, 6.18, 2.06, 0.34, 2.06, 4.12, 2.06, 10.31, 0.69, 4.12, 1.03] SNP counts: [4323, 2959, 5156, 11742, 2381, 3850, 700, 21658, 4181, 12691, 3294, 19216, 6589, 3009, 5815, 26133, 7817, 7963, 8668, 3041, 11975, 8508, 5430, 4702, 3825, 2936] SNP IDs counts: [4323, 2959, 5156, 11742, 2381, 3850, 700, 21658, 4181, 12691, 3294, 19216, 6589, 3009, 5815, 26133, 7817, 7963, 8668, 3041, 11975, 8508, 5430, 4702, 3825, 2936] Critical gap: 603162bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.41Mbp, 7.16Mbp, 10.03Mbp, 16.79Mbp, 18.24Mbp, 24.56Mbp, 24.93Mbp, 36.81Mbp, 39.27Mbp, 46.81Mbp, 48.84Mbp, 59.89Mbp, 63.96Mbp, 65.69Mbp, 69.12Mbp, 83.28Mbp, 87.38Mbp, 92.27Mbp, 97.56Mbp, 99.27Mbp, 105.85Mbp, 110.37Mbp, 113.23Mbp, 116.26Mbp, 118.32Mbp, 120.13Mbp] 2025-01-31 09:57:43,858 DEBUG chr12 time: 183.15049897599965 s 2025-01-31 09:57:43,964 DEBUG chr12: Fitting background model for 26 segments 2025-01-31 09:57:43,966 DEBUG Processing 533/559 atomic regions from SNP 159760 to 160360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,022 DEBUG Processing 38/530 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,179 DEBUG Processing 534/559 atomic regions from SNP 160060 to 160660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,217 DEBUG Processing 39/530 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,395 DEBUG Processing 535/559 atomic regions from SNP 160360 to 160960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,412 DEBUG Processing 40/530 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,605 DEBUG Processing 536/559 atomic regions from SNP 160660 to 161260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,613 DEBUG Processing 41/530 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,812 DEBUG Processing 42/530 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:44,818 DEBUG Processing 537/559 atomic regions from SNP 160960 to 161560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,008 DEBUG Processing 43/530 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,031 DEBUG Processing 538/559 atomic regions from SNP 161260 to 161860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,212 DEBUG Processing 44/530 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,244 DEBUG Processing 539/559 atomic regions from SNP 161560 to 162160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,413 DEBUG Processing 45/530 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,442 DEBUG Processing 540/559 atomic regions from SNP 161860 to 162460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,617 DEBUG Processing 46/530 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,633 DEBUG Processing 541/559 atomic regions from SNP 162160 to 162760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,815 DEBUG Processing 47/530 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:45,817 DEBUG Processing 542/559 atomic regions from SNP 162460 to 163060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,999 DEBUG Processing 543/559 atomic regions from SNP 162760 to 163360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,012 DEBUG Processing 48/530 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,179 DEBUG Processing 544/559 atomic regions from SNP 163060 to 163660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,204 DEBUG Processing 49/530 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,361 DEBUG Processing 545/559 atomic regions from SNP 163360 to 163960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,397 DEBUG Processing 50/530 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,542 DEBUG Processing 546/559 atomic regions from SNP 163660 to 164260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,587 DEBUG Processing 51/530 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,724 DEBUG Processing 547/559 atomic regions from SNP 163960 to 164560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,780 DEBUG Processing 52/530 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:46,931 DEBUG Processing 548/559 atomic regions from SNP 164260 to 164860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,974 DEBUG Processing 53/530 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,145 DEBUG Processing 549/559 atomic regions from SNP 164560 to 165160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,169 DEBUG Processing 54/530 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,335 DEBUG Processing 550/559 atomic regions from SNP 164860 to 165460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,357 DEBUG Processing 55/530 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,516 DEBUG Processing 551/559 atomic regions from SNP 165160 to 165760 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,556 DEBUG Processing 56/530 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,698 DEBUG Processing 552/559 atomic regions from SNP 165460 to 166060 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,766 DEBUG Processing 57/530 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:47,895 DEBUG Processing 553/559 atomic regions from SNP 165760 to 166360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,957 DEBUG Processing 58/530 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,104 DEBUG Processing 554/559 atomic regions from SNP 166060 to 166660 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,151 DEBUG Processing 59/530 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,292 DEBUG Processing 555/559 atomic regions from SNP 166360 to 166960 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,350 DEBUG Processing 60/530 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,488 DEBUG Processing 556/559 atomic regions from SNP 166660 to 167260 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,543 DEBUG Processing 61/530 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,687 DEBUG Processing 557/559 atomic regions from SNP 166960 to 167560 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,736 DEBUG Processing 62/530 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:48,883 DEBUG Processing 558/559 atomic regions from SNP 167260 to 167860 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,928 DEBUG Processing 63/530 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,084 DEBUG Processing 559/559 atomic regions from SNP 167560 to 168160 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,123 DEBUG Processing 64/530 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,227 DEBUG Unique SNPs positions in subchromosome 1: 168161 2025-01-31 09:57:49,320 DEBUG Processing 65/530 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,525 DEBUG Processing 66/530 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,723 DEBUG Processing 67/530 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,918 DEBUG Processing 68/530 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,115 DEBUG Processing 69/530 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,301 DEBUG Processing 70/530 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,488 DEBUG Processing 71/530 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,676 DEBUG Processing 72/530 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,871 DEBUG Processing 73/530 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,064 DEBUG Processing 74/530 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,256 DEBUG Processing 75/530 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,445 DEBUG Processing 76/530 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,631 DEBUG Processing 77/530 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,813 DEBUG Processing 78/530 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,003 DEBUG Processing 79/530 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,191 DEBUG Processing 80/530 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,376 DEBUG Processing 81/530 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,565 DEBUG Processing 82/530 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,752 DEBUG Processing 83/530 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,940 DEBUG Processing 84/530 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,127 DEBUG Processing 85/530 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,308 DEBUG Processing 86/530 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,488 DEBUG Processing 87/530 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,666 DEBUG Processing 88/530 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,848 DEBUG Processing 89/530 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,028 DEBUG Processing 90/530 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,209 DEBUG Processing 91/530 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,394 DEBUG Processing 92/530 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,585 DEBUG Processing 93/530 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,765 DEBUG Processing 94/530 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,947 DEBUG Processing 95/530 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,129 DEBUG Processing 96/530 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,313 DEBUG Processing 97/530 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,495 DEBUG Processing 98/530 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,677 DEBUG Processing 99/530 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,857 DEBUG Processing 100/530 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,039 DEBUG Processing 101/530 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,224 DEBUG Processing 102/530 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,406 DEBUG Processing 103/530 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,584 DEBUG Processing 104/530 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,761 DEBUG Processing 105/530 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,944 DEBUG Processing 106/530 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,125 DEBUG Processing 107/530 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,315 DEBUG Processing 108/530 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,528 DEBUG Processing 109/530 atomic regions from SNP 32508 to 33109 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,738 DEBUG Processing 110/530 atomic regions from SNP 32809 to 33410 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,937 DEBUG Processing 111/530 atomic regions from SNP 33110 to 33711 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,142 DEBUG Processing 112/530 atomic regions from SNP 33411 to 34012 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,355 DEBUG Processing 113/530 atomic regions from SNP 33712 to 34313 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,564 DEBUG Processing 114/530 atomic regions from SNP 34013 to 34614 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,780 DEBUG Processing 115/530 atomic regions from SNP 34314 to 34915 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,995 DEBUG Processing 116/530 atomic regions from SNP 34615 to 35216 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,058 DEBUG Subchromosome time: 139.53353237197734, subchromosome SNPs: 168161 2025-01-31 09:57:59,058 DEBUG Estimated BADs: [7.24, 0.80, 4.83, 1.21, 4.83, 2.41, 9.65, 0.60, 4.83, 0.80, 4.83, 0.80, 2.41, 1.21, 0.48, 2.41, 0.48, 1.21, 0.48, 1.21, 7.24, 1.21, 9.65, 4.83] SNP counts: [3706, 4809, 1825, 1793, 8217, 4361, 3671, 875, 6976, 10510, 18320, 6883, 3910, 9924, 7960, 5195, 9009, 25786, 6913, 7570, 495, 3716, 9019, 6718] SNP IDs counts: [3706, 4809, 1825, 1793, 8217, 4361, 3671, 875, 6976, 10510, 18320, 6883, 3910, 9924, 7960, 5195, 9009, 25786, 6913, 7570, 495, 3716, 9019, 6718] Critical gap: 532015bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.09Mbp], 5.43Mbp, 8.04Mbp, 9.05Mbp, 10.02Mbp, 14.48Mbp, 17.07Mbp, 19.02Mbp, 19.61Mbp, 23.45Mbp, 29.33Mbp, 39.15Mbp, 43.03Mbp, 45.17Mbp, 50.92Mbp, 55.82Mbp, 58.80Mbp, 64.31Mbp, 79.02Mbp, 83.11Mbp, 87.43Mbp, 87.69Mbp, 89.76Mbp, 94.52Mbp, 98.21Mbp] 2025-01-31 09:57:59,058 DEBUG chr16 time: 139.53408260201104 s 2025-01-31 09:57:59,145 DEBUG chr16: Fitting background model for 24 segments 2025-01-31 09:57:59,204 DEBUG Processing 117/530 atomic regions from SNP 34916 to 35517 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,410 DEBUG Processing 118/530 atomic regions from SNP 35217 to 35818 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,621 DEBUG Processing 119/530 atomic regions from SNP 35518 to 36119 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,837 DEBUG Processing 120/530 atomic regions from SNP 35819 to 36420 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,046 DEBUG Processing 121/530 atomic regions from SNP 36120 to 36721 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,256 DEBUG Processing 122/530 atomic regions from SNP 36421 to 37022 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,475 DEBUG Processing 123/530 atomic regions from SNP 36722 to 37323 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,693 DEBUG Processing 124/530 atomic regions from SNP 37023 to 37624 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,909 DEBUG Processing 125/530 atomic regions from SNP 37324 to 37925 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,120 DEBUG Processing 126/530 atomic regions from SNP 37625 to 38226 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,326 DEBUG Processing 127/530 atomic regions from SNP 37926 to 38527 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,542 DEBUG Processing 128/530 atomic regions from SNP 38227 to 38828 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,752 DEBUG Processing 129/530 atomic regions from SNP 38528 to 39129 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,968 DEBUG Processing 130/530 atomic regions from SNP 38829 to 39430 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,185 DEBUG Processing 131/530 atomic regions from SNP 39130 to 39731 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,393 DEBUG Processing 132/530 atomic regions from SNP 39431 to 40032 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,598 DEBUG Processing 133/530 atomic regions from SNP 39732 to 40333 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,821 DEBUG Processing 134/530 atomic regions from SNP 40033 to 40634 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,149 DEBUG Processing 135/530 atomic regions from SNP 40334 to 40935 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,424 DEBUG Processing 136/530 atomic regions from SNP 40635 to 41236 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,695 DEBUG Processing 137/530 atomic regions from SNP 40936 to 41537 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,943 DEBUG Processing 138/530 atomic regions from SNP 41237 to 41838 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,199 DEBUG Processing 139/530 atomic regions from SNP 41538 to 42139 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,434 DEBUG Processing 140/530 atomic regions from SNP 41839 to 42440 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,661 DEBUG Processing 141/530 atomic regions from SNP 42140 to 42741 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,929 DEBUG Processing 142/530 atomic regions from SNP 42441 to 43042 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,166 DEBUG Processing 143/530 atomic regions from SNP 42742 to 43343 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,394 DEBUG Processing 144/530 atomic regions from SNP 43043 to 43644 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,624 DEBUG Processing 145/530 atomic regions from SNP 43344 to 43945 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,852 DEBUG Processing 146/530 atomic regions from SNP 43645 to 44246 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,065 DEBUG Processing 147/530 atomic regions from SNP 43946 to 44547 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,274 DEBUG Processing 148/530 atomic regions from SNP 44247 to 44848 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,481 DEBUG Processing 149/530 atomic regions from SNP 44548 to 45149 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,692 DEBUG Processing 150/530 atomic regions from SNP 44849 to 45450 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,901 DEBUG Processing 151/530 atomic regions from SNP 45150 to 45751 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,099 DEBUG Processing 152/530 atomic regions from SNP 45451 to 46052 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,296 DEBUG Processing 153/530 atomic regions from SNP 45752 to 46353 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,487 DEBUG Processing 154/530 atomic regions from SNP 46053 to 46654 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,698 DEBUG Processing 155/530 atomic regions from SNP 46354 to 46955 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,924 DEBUG Processing 156/530 atomic regions from SNP 46655 to 47256 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,146 DEBUG Processing 157/530 atomic regions from SNP 46956 to 47557 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,363 DEBUG Processing 158/530 atomic regions from SNP 47257 to 47858 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,577 DEBUG Processing 159/530 atomic regions from SNP 47558 to 48159 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,785 DEBUG Processing 160/530 atomic regions from SNP 47859 to 48460 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,998 DEBUG Processing 161/530 atomic regions from SNP 48160 to 48761 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,207 DEBUG Processing 162/530 atomic regions from SNP 48461 to 49062 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,412 DEBUG Processing 163/530 atomic regions from SNP 48762 to 49363 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,636 DEBUG Processing 164/530 atomic regions from SNP 49063 to 49664 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,641 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:58:09,831 DEBUG Processing 165/530 atomic regions from SNP 49364 to 49965 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,024 DEBUG Processing 166/530 atomic regions from SNP 49665 to 50266 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,217 DEBUG Processing 167/530 atomic regions from SNP 49966 to 50567 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,413 DEBUG Processing 168/530 atomic regions from SNP 50267 to 50868 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,609 DEBUG Processing 169/530 atomic regions from SNP 50568 to 51169 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,804 DEBUG Processing 170/530 atomic regions from SNP 50869 to 51470 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,007 DEBUG Processing 171/530 atomic regions from SNP 51170 to 51771 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,232 DEBUG Processing 172/530 atomic regions from SNP 51471 to 52072 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,455 DEBUG Processing 173/530 atomic regions from SNP 51772 to 52373 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,681 DEBUG Processing 174/530 atomic regions from SNP 52073 to 52674 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,889 DEBUG Processing 175/530 atomic regions from SNP 52374 to 52975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,079 DEBUG Processing 176/530 atomic regions from SNP 52675 to 53276 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,304 DEBUG Processing 177/530 atomic regions from SNP 52976 to 53577 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,531 DEBUG Processing 178/530 atomic regions from SNP 53277 to 53878 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,753 DEBUG Processing 179/530 atomic regions from SNP 53578 to 54179 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,003 DEBUG Processing 180/530 atomic regions from SNP 53879 to 54480 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,248 DEBUG Processing 181/530 atomic regions from SNP 54180 to 54781 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,456 DEBUG Processing 182/530 atomic regions from SNP 54481 to 55082 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,671 DEBUG Processing 183/530 atomic regions from SNP 54782 to 55383 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,888 DEBUG Processing 184/530 atomic regions from SNP 55083 to 55684 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,106 DEBUG Processing 185/530 atomic regions from SNP 55384 to 55985 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,306 DEBUG Processing 186/530 atomic regions from SNP 55685 to 56286 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,500 DEBUG Processing 187/530 atomic regions from SNP 55986 to 56587 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,703 DEBUG Processing 188/530 atomic regions from SNP 56287 to 56888 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,885 DEBUG Processing 189/530 atomic regions from SNP 56588 to 57189 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,071 DEBUG Processing 190/530 atomic regions from SNP 56889 to 57490 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,259 DEBUG Processing 191/530 atomic regions from SNP 57190 to 57791 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,445 DEBUG Processing 192/530 atomic regions from SNP 57491 to 58092 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,634 DEBUG Processing 193/530 atomic regions from SNP 57792 to 58393 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,828 DEBUG Processing 194/530 atomic regions from SNP 58093 to 58694 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,036 DEBUG Processing 195/530 atomic regions from SNP 58394 to 58995 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,245 DEBUG Processing 196/530 atomic regions from SNP 58695 to 59296 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,448 DEBUG Processing 197/530 atomic regions from SNP 58996 to 59597 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,717 DEBUG Processing 198/530 atomic regions from SNP 59297 to 59898 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,987 DEBUG Processing 199/530 atomic regions from SNP 59598 to 60199 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,188 DEBUG Processing 200/530 atomic regions from SNP 59899 to 60500 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,454 DEBUG Processing 201/530 atomic regions from SNP 60200 to 60801 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,965 DEBUG Processing 202/530 atomic regions from SNP 60501 to 61102 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,169 DEBUG Processing 203/530 atomic regions from SNP 60802 to 61403 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,491 DEBUG Processing 204/530 atomic regions from SNP 61103 to 61704 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,722 DEBUG Processing 205/530 atomic regions from SNP 61404 to 62005 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,810 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:58:18,812 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:58:18,922 DEBUG Processing 206/530 atomic regions from SNP 61705 to 62306 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,120 DEBUG Processing 207/530 atomic regions from SNP 62006 to 62607 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,324 DEBUG Processing 208/530 atomic regions from SNP 62307 to 62908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,521 DEBUG Processing 209/530 atomic regions from SNP 62608 to 63209 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,719 DEBUG Processing 210/530 atomic regions from SNP 62909 to 63510 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,920 DEBUG Processing 211/530 atomic regions from SNP 63210 to 63811 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,120 DEBUG Processing 212/530 atomic regions from SNP 63511 to 64112 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,312 DEBUG Processing 213/530 atomic regions from SNP 63812 to 64413 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,503 DEBUG Processing 214/530 atomic regions from SNP 64113 to 64714 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,655 DEBUG chrY total SNP count: 111 2025-01-31 09:58:20,655 DEBUG chrY length: 91744698 2025-01-31 09:58:20,655 DEBUG ----------------------------------------- 2025-01-31 09:58:20,655 INFO Processing SNPs in chrY 2025-01-31 09:58:20,656 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 11), (11, 16), (16, 26), (26, 34), (34, 38), (38, 39), (39, 42), (42, 50), (50, 54), (54, 60), (60, 61), (61, 62), (62, 65), (65, 68), (68, 111)] 2025-01-31 09:58:20,657 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [11, 5, 10, 8, 4, 1, 3, 8, 4, 6, 1, 1, 3, 3, 43] SNP IDs counts: [11, 5, 10, 8, 4, 1, 3, 8, 4, 6, 1, 1, 3, 3, 43] Critical gap: 15313bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.84Mbp], 0.85Mbp[1.71Mbp], 2.57Mbp[0.19Mbp], 2.76Mbp[1.17Mbp], 3.93Mbp[0.14Mbp], 4.07Mbp[1.09Mbp], 5.17Mbp[1.61Mbp], 6.78Mbp[2.91Mbp], 9.70Mbp[0.11Mbp], 9.81Mbp[0.90Mbp], 10.71Mbp[9.64Mbp], 20.35Mbp[2.37Mbp], 22.72Mbp[20.70Mbp], 43.42Mbp[43.43Mbp], 86.86Mbp[3.86Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:58:20,657 DEBUG chrY time: 0.0015823380090296268 s 2025-01-31 09:58:20,697 DEBUG Processing 215/530 atomic regions from SNP 64414 to 65015 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,879 DEBUG Processing 216/530 atomic regions from SNP 64715 to 65316 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,070 DEBUG Processing 217/530 atomic regions from SNP 65016 to 65617 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,251 DEBUG Processing 218/530 atomic regions from SNP 65317 to 65918 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,442 DEBUG Processing 219/530 atomic regions from SNP 65618 to 66219 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,629 DEBUG Processing 220/530 atomic regions from SNP 65919 to 66520 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,820 DEBUG Processing 221/530 atomic regions from SNP 66220 to 66821 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,017 DEBUG Processing 222/530 atomic regions from SNP 66521 to 67122 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,203 DEBUG Processing 223/530 atomic regions from SNP 66822 to 67423 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,390 DEBUG Processing 224/530 atomic regions from SNP 67123 to 67724 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,583 DEBUG Processing 225/530 atomic regions from SNP 67424 to 68025 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,770 DEBUG Processing 226/530 atomic regions from SNP 67725 to 68326 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,965 DEBUG Processing 227/530 atomic regions from SNP 68026 to 68627 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,160 DEBUG Processing 228/530 atomic regions from SNP 68327 to 68928 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,323 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:58:23,360 DEBUG Processing 229/530 atomic regions from SNP 68628 to 69229 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,571 DEBUG Processing 230/530 atomic regions from SNP 68929 to 69530 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,852 DEBUG Processing 231/530 atomic regions from SNP 69230 to 69831 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,044 DEBUG Processing 232/530 atomic regions from SNP 69531 to 70132 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,234 DEBUG Processing 233/530 atomic regions from SNP 69832 to 70433 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,253 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:24,423 DEBUG Processing 234/530 atomic regions from SNP 70133 to 70734 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,613 DEBUG Processing 235/530 atomic regions from SNP 70434 to 71035 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,794 DEBUG Processing 236/530 atomic regions from SNP 70735 to 71336 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,996 DEBUG Processing 237/530 atomic regions from SNP 71036 to 71637 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,208 DEBUG Processing 238/530 atomic regions from SNP 71337 to 71938 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,432 DEBUG Processing 239/530 atomic regions from SNP 71638 to 72239 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,654 DEBUG Processing 240/530 atomic regions from SNP 71939 to 72540 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,886 DEBUG Processing 241/530 atomic regions from SNP 72240 to 72841 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,123 DEBUG Processing 242/530 atomic regions from SNP 72541 to 73142 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,359 DEBUG Processing 243/530 atomic regions from SNP 72842 to 73443 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,602 DEBUG Processing 244/530 atomic regions from SNP 73143 to 73744 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,845 DEBUG Processing 245/530 atomic regions from SNP 73444 to 74045 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,075 DEBUG Processing 246/530 atomic regions from SNP 73745 to 74346 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,289 DEBUG Processing 247/530 atomic regions from SNP 74046 to 74647 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,487 DEBUG Processing 248/530 atomic regions from SNP 74347 to 74948 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,693 DEBUG Processing 249/530 atomic regions from SNP 74648 to 75249 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,920 DEBUG Processing 250/530 atomic regions from SNP 74949 to 75550 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,204 DEBUG Processing 251/530 atomic regions from SNP 75250 to 75851 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,585 DEBUG Processing 252/530 atomic regions from SNP 75551 to 76152 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,818 DEBUG Processing 253/530 atomic regions from SNP 75852 to 76453 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,046 DEBUG Processing 254/530 atomic regions from SNP 76153 to 76754 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,241 DEBUG Processing 255/530 atomic regions from SNP 76454 to 77055 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,459 DEBUG Processing 256/530 atomic regions from SNP 76755 to 77356 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,650 DEBUG Processing 257/530 atomic regions from SNP 77056 to 77657 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,859 DEBUG Processing 258/530 atomic regions from SNP 77357 to 77958 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,050 DEBUG Processing 259/530 atomic regions from SNP 77658 to 78259 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,246 DEBUG Processing 260/530 atomic regions from SNP 77959 to 78560 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,440 DEBUG Processing 261/530 atomic regions from SNP 78260 to 78861 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,641 DEBUG Processing 262/530 atomic regions from SNP 78561 to 79162 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,834 DEBUG Processing 263/530 atomic regions from SNP 78862 to 79463 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,029 DEBUG Processing 264/530 atomic regions from SNP 79163 to 79764 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,239 DEBUG Processing 265/530 atomic regions from SNP 79464 to 80065 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,451 DEBUG Processing 266/530 atomic regions from SNP 79765 to 80366 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,651 DEBUG Processing 267/530 atomic regions from SNP 80066 to 80667 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,851 DEBUG Processing 268/530 atomic regions from SNP 80367 to 80968 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,038 DEBUG Processing 269/530 atomic regions from SNP 80668 to 81269 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,228 DEBUG Processing 270/530 atomic regions from SNP 80969 to 81570 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,774 DEBUG Processing 271/530 atomic regions from SNP 81270 to 81871 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,220 DEBUG Processing 272/530 atomic regions from SNP 81571 to 82172 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,801 DEBUG Processing 273/530 atomic regions from SNP 81872 to 82473 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,030 DEBUG Processing 274/530 atomic regions from SNP 82173 to 82774 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,643 DEBUG Processing 275/530 atomic regions from SNP 82474 to 83075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,830 DEBUG Processing 276/530 atomic regions from SNP 82775 to 83375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,988 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:58:34,989 DEBUG chr18: Signal quantile: 0.993. signal threshold: 15. Best RMSEA: 0.021 2025-01-31 09:58:35,019 DEBUG Processing 277/530 atomic regions from SNP 83075 to 83675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,212 DEBUG Processing 278/530 atomic regions from SNP 83375 to 83975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,402 DEBUG Processing 279/530 atomic regions from SNP 83675 to 84275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,591 DEBUG Processing 280/530 atomic regions from SNP 83975 to 84575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,782 DEBUG Processing 281/530 atomic regions from SNP 84275 to 84875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,890 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:58:35,891 DEBUG chr19: Signal quantile: 0.987. signal threshold: 17. Best RMSEA: 0.013 2025-01-31 09:58:35,978 DEBUG Processing 282/530 atomic regions from SNP 84575 to 85175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,167 DEBUG Processing 283/530 atomic regions from SNP 84875 to 85475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,354 DEBUG Processing 284/530 atomic regions from SNP 85175 to 85775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,548 DEBUG Processing 285/530 atomic regions from SNP 85475 to 86075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,656 DEBUG chr18 total SNP count: 155767 2025-01-31 09:58:36,656 DEBUG chr18 length: 90702639 2025-01-31 09:58:36,656 DEBUG ----------------------------------------- 2025-01-31 09:58:36,656 INFO Processing SNPs in chr18 2025-01-31 09:58:36,733 DEBUG Processing 286/530 atomic regions from SNP 85775 to 86375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,804 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155767)] 2025-01-31 09:58:36,906 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:36,916 DEBUG Processing 287/530 atomic regions from SNP 86075 to 86675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,948 DEBUG chr19 total SNP count: 104864 2025-01-31 09:58:36,948 DEBUG chr19 length: 61431566 2025-01-31 09:58:36,948 DEBUG ----------------------------------------- 2025-01-31 09:58:36,948 INFO Processing SNPs in chr19 2025-01-31 09:58:37,053 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 104864)] 2025-01-31 09:58:37,101 DEBUG Processing 288/530 atomic regions from SNP 86375 to 86975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,122 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:37,285 DEBUG Processing 289/530 atomic regions from SNP 86675 to 87275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,472 DEBUG Processing 290/530 atomic regions from SNP 86975 to 87575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,656 DEBUG Processing 291/530 atomic regions from SNP 87275 to 87875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,834 DEBUG Processing 292/530 atomic regions from SNP 87575 to 88175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,016 DEBUG Processing 293/530 atomic regions from SNP 87875 to 88475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,197 DEBUG Processing 294/530 atomic regions from SNP 88175 to 88775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,386 DEBUG Processing 295/530 atomic regions from SNP 88475 to 89075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,565 DEBUG Processing 296/530 atomic regions from SNP 88775 to 89375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,760 DEBUG Processing 297/530 atomic regions from SNP 89075 to 89675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,950 DEBUG Processing 298/530 atomic regions from SNP 89375 to 89975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,147 DEBUG Processing 299/530 atomic regions from SNP 89675 to 90275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,365 DEBUG Processing 300/530 atomic regions from SNP 89975 to 90575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,581 DEBUG Processing 301/530 atomic regions from SNP 90275 to 90875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,797 DEBUG Processing 302/530 atomic regions from SNP 90575 to 91175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,008 DEBUG Processing 303/530 atomic regions from SNP 90875 to 91475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,226 DEBUG Processing 304/530 atomic regions from SNP 91175 to 91775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,437 DEBUG Processing 305/530 atomic regions from SNP 91475 to 92075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,652 DEBUG Processing 306/530 atomic regions from SNP 91775 to 92375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,858 DEBUG Processing 307/530 atomic regions from SNP 92075 to 92675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,054 DEBUG Processing 308/530 atomic regions from SNP 92375 to 92975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,236 DEBUG Processing 309/530 atomic regions from SNP 92675 to 93275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,420 DEBUG Processing 310/530 atomic regions from SNP 92975 to 93575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,604 DEBUG Processing 311/530 atomic regions from SNP 93275 to 93875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,786 DEBUG Processing 312/530 atomic regions from SNP 93575 to 94175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,968 DEBUG Processing 313/530 atomic regions from SNP 93875 to 94475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,144 DEBUG Processing 314/530 atomic regions from SNP 94175 to 94775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,326 DEBUG Processing 315/530 atomic regions from SNP 94475 to 95075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,508 DEBUG Processing 316/530 atomic regions from SNP 94775 to 95375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,688 DEBUG Processing 317/530 atomic regions from SNP 95075 to 95675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,866 DEBUG Processing 318/530 atomic regions from SNP 95375 to 95975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,049 DEBUG Processing 319/530 atomic regions from SNP 95675 to 96275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,234 DEBUG Processing 320/530 atomic regions from SNP 95975 to 96575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,414 DEBUG Processing 321/530 atomic regions from SNP 96275 to 96875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,595 DEBUG Processing 322/530 atomic regions from SNP 96575 to 97175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,777 DEBUG Processing 323/530 atomic regions from SNP 96875 to 97475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,959 DEBUG Processing 324/530 atomic regions from SNP 97175 to 97775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,137 DEBUG Processing 325/530 atomic regions from SNP 97475 to 98075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,319 DEBUG Processing 326/530 atomic regions from SNP 97775 to 98375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,497 DEBUG Processing 327/530 atomic regions from SNP 98075 to 98675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,677 DEBUG Processing 328/530 atomic regions from SNP 98375 to 98975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,856 DEBUG Processing 329/530 atomic regions from SNP 98675 to 99275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,035 DEBUG Processing 330/530 atomic regions from SNP 98975 to 99575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,213 DEBUG Processing 331/530 atomic regions from SNP 99275 to 99875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,397 DEBUG Processing 332/530 atomic regions from SNP 99575 to 100175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,576 DEBUG Processing 333/530 atomic regions from SNP 99875 to 100475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,795 DEBUG Processing 334/530 atomic regions from SNP 100175 to 100775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,979 DEBUG Processing 335/530 atomic regions from SNP 100475 to 101075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,158 DEBUG Processing 336/530 atomic regions from SNP 100775 to 101375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,340 DEBUG Processing 337/530 atomic regions from SNP 101075 to 101675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,522 DEBUG Processing 338/530 atomic regions from SNP 101375 to 101975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,703 DEBUG Processing 339/530 atomic regions from SNP 101675 to 102275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,934 DEBUG Processing 340/530 atomic regions from SNP 101975 to 102575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,125 DEBUG Processing 341/530 atomic regions from SNP 102275 to 102875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,448 DEBUG Processing 342/530 atomic regions from SNP 102575 to 103175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,646 DEBUG Processing 343/530 atomic regions from SNP 102875 to 103475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,854 DEBUG Processing 344/530 atomic regions from SNP 103175 to 103775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,075 DEBUG Processing 345/530 atomic regions from SNP 103475 to 104075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,499 DEBUG Processing 346/530 atomic regions from SNP 103775 to 104375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,704 DEBUG Processing 347/530 atomic regions from SNP 104075 to 104675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,909 DEBUG Processing 348/530 atomic regions from SNP 104375 to 104975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,113 DEBUG Processing 349/530 atomic regions from SNP 104675 to 105275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,310 DEBUG Processing 350/530 atomic regions from SNP 104975 to 105575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,500 DEBUG Processing 351/530 atomic regions from SNP 105275 to 105875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,690 DEBUG Processing 352/530 atomic regions from SNP 105575 to 106175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,693 DEBUG Segmenting atomic regions: 2025-01-31 09:58:49,738 DEBUG Processing 1/348 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:49,877 DEBUG Processing 353/530 atomic regions from SNP 105875 to 106475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,916 DEBUG Processing 2/348 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,065 DEBUG Processing 354/530 atomic regions from SNP 106175 to 106775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,083 DEBUG Processing 3/348 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,250 DEBUG Processing 355/530 atomic regions from SNP 106475 to 107075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,255 DEBUG Processing 4/348 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,432 DEBUG Processing 5/348 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,436 DEBUG Processing 356/530 atomic regions from SNP 106775 to 107375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,619 DEBUG Processing 6/348 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,627 DEBUG Processing 357/530 atomic regions from SNP 107075 to 107675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,799 DEBUG Processing 7/348 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:50,830 DEBUG Processing 358/530 atomic regions from SNP 107375 to 107975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,982 DEBUG Processing 8/348 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,042 DEBUG Processing 359/530 atomic regions from SNP 107675 to 108275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,163 DEBUG Processing 9/348 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,259 DEBUG Processing 360/530 atomic regions from SNP 107975 to 108575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,345 DEBUG Processing 10/348 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,453 DEBUG Processing 361/530 atomic regions from SNP 108275 to 108875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,522 DEBUG Processing 11/348 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,647 DEBUG Processing 362/530 atomic regions from SNP 108575 to 109175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,692 DEBUG Processing 12/348 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:51,851 DEBUG Processing 363/530 atomic regions from SNP 108875 to 109475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,883 DEBUG Processing 13/348 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,058 DEBUG Processing 364/530 atomic regions from SNP 109175 to 109775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,067 DEBUG Processing 14/348 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,261 DEBUG Processing 15/348 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,268 DEBUG Processing 365/530 atomic regions from SNP 109475 to 110075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,458 DEBUG Processing 16/348 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,487 DEBUG Processing 366/530 atomic regions from SNP 109775 to 110375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,661 DEBUG Processing 17/348 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,689 DEBUG Processing 367/530 atomic regions from SNP 110075 to 110675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,851 DEBUG Processing 18/348 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:52,882 DEBUG Processing 368/530 atomic regions from SNP 110375 to 110975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,048 DEBUG Processing 19/348 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,081 DEBUG Processing 369/530 atomic regions from SNP 110675 to 111275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,255 DEBUG Processing 20/348 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,296 DEBUG Processing 370/530 atomic regions from SNP 110975 to 111575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,528 DEBUG Processing 21/348 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,551 DEBUG Processing 371/530 atomic regions from SNP 111275 to 111875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,710 DEBUG Processing 22/348 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,743 DEBUG Processing 372/530 atomic regions from SNP 111575 to 112175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,880 DEBUG Processing 23/348 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:53,933 DEBUG Processing 373/530 atomic regions from SNP 111875 to 112475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,068 DEBUG Processing 24/348 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,128 DEBUG Processing 374/530 atomic regions from SNP 112175 to 112775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,259 DEBUG Processing 25/348 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,321 DEBUG Processing 375/530 atomic regions from SNP 112475 to 113075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,450 DEBUG Processing 26/348 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,513 DEBUG Processing 376/530 atomic regions from SNP 112775 to 113375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,638 DEBUG Processing 27/348 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,721 DEBUG Processing 377/530 atomic regions from SNP 113075 to 113675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,824 DEBUG Processing 28/348 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:54,923 DEBUG Processing 378/530 atomic regions from SNP 113375 to 113975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,975 DEBUG Processing 29/348 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,124 DEBUG Processing 379/530 atomic regions from SNP 113675 to 114275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,129 DEBUG Processing 30/348 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,285 DEBUG Processing 31/348 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,321 DEBUG Processing 380/530 atomic regions from SNP 113975 to 114575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,441 DEBUG Segmenting atomic regions: 2025-01-31 09:58:55,448 DEBUG Processing 32/348 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,509 DEBUG Processing 1/518 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,521 DEBUG Processing 381/530 atomic regions from SNP 114275 to 114875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,621 DEBUG Processing 33/348 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,709 DEBUG Processing 2/518 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,724 DEBUG Processing 382/530 atomic regions from SNP 114575 to 115175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,816 DEBUG Processing 34/348 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:55,911 DEBUG Processing 3/518 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:55,930 DEBUG Processing 383/530 atomic regions from SNP 114875 to 115475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,011 DEBUG Processing 35/348 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,114 DEBUG Processing 4/518 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,141 DEBUG Processing 384/530 atomic regions from SNP 115175 to 115775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,183 DEBUG Processing 36/348 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,315 DEBUG Processing 5/518 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,338 DEBUG Processing 37/348 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,346 DEBUG Processing 385/530 atomic regions from SNP 115475 to 116075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,493 DEBUG Processing 38/348 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,512 DEBUG Processing 6/518 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,549 DEBUG Processing 386/530 atomic regions from SNP 115775 to 116375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,658 DEBUG Processing 39/348 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,702 DEBUG Processing 7/518 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,751 DEBUG Processing 387/530 atomic regions from SNP 116075 to 116675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,849 DEBUG Processing 40/348 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:56,898 DEBUG Processing 8/518 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:56,971 DEBUG Processing 388/530 atomic regions from SNP 116375 to 116975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,038 DEBUG Processing 41/348 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,091 DEBUG Processing 9/518 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,196 DEBUG Processing 389/530 atomic regions from SNP 116675 to 117275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,222 DEBUG Processing 42/348 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,299 DEBUG Processing 10/518 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,396 DEBUG Processing 43/348 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,415 DEBUG Processing 390/530 atomic regions from SNP 116975 to 117575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,495 DEBUG Processing 11/518 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,576 DEBUG Processing 44/348 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,640 DEBUG Processing 391/530 atomic regions from SNP 117275 to 117875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,705 DEBUG Processing 12/518 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,757 DEBUG Processing 45/348 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:57,841 DEBUG Processing 392/530 atomic regions from SNP 117575 to 118175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,896 DEBUG Processing 13/518 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:57,921 DEBUG Processing 46/348 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,061 DEBUG Processing 393/530 atomic regions from SNP 117875 to 118475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,074 DEBUG Processing 47/348 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,111 DEBUG Processing 14/518 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,225 DEBUG Processing 48/348 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,274 DEBUG Processing 394/530 atomic regions from SNP 118175 to 118775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,324 DEBUG Processing 15/518 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,380 DEBUG Processing 49/348 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,478 DEBUG Processing 395/530 atomic regions from SNP 118475 to 119075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,521 DEBUG Processing 16/518 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,536 DEBUG Processing 50/348 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,682 DEBUG Processing 396/530 atomic regions from SNP 118775 to 119375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,700 DEBUG Processing 51/348 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,718 DEBUG Processing 17/518 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,877 DEBUG Processing 52/348 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:58,885 DEBUG Processing 397/530 atomic regions from SNP 119075 to 119675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,918 DEBUG Processing 18/518 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,037 DEBUG Processing 53/348 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,092 DEBUG Processing 398/530 atomic regions from SNP 119375 to 119975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,119 DEBUG Processing 19/518 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,192 DEBUG Processing 54/348 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,291 DEBUG Processing 399/530 atomic regions from SNP 119675 to 120275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,317 DEBUG Processing 20/518 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,345 DEBUG Processing 55/348 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,495 DEBUG Processing 400/530 atomic regions from SNP 119975 to 120575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,499 DEBUG Processing 56/348 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,540 DEBUG Processing 21/518 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,655 DEBUG Processing 57/348 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,699 DEBUG Processing 401/530 atomic regions from SNP 120275 to 120875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,734 DEBUG Processing 22/518 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,808 DEBUG Processing 58/348 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:58:59,898 DEBUG Processing 402/530 atomic regions from SNP 120575 to 121175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,930 DEBUG Processing 23/518 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,970 DEBUG Processing 59/348 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,105 DEBUG Processing 403/530 atomic regions from SNP 120875 to 121475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,129 DEBUG Processing 60/348 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,132 DEBUG Processing 24/518 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,283 DEBUG Processing 61/348 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,307 DEBUG Processing 404/530 atomic regions from SNP 121175 to 121775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,328 DEBUG Processing 25/518 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,440 DEBUG Processing 62/348 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,514 DEBUG Processing 405/530 atomic regions from SNP 121475 to 122075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,526 DEBUG Processing 26/518 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,598 DEBUG Processing 63/348 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,717 DEBUG Processing 406/530 atomic regions from SNP 121775 to 122375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,723 DEBUG Processing 27/518 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,751 DEBUG Processing 64/348 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,904 DEBUG Processing 65/348 atomic regions from SNP 19264 to 19865 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:00,916 DEBUG Processing 407/530 atomic regions from SNP 122075 to 122675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,916 DEBUG Processing 28/518 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,059 DEBUG Processing 66/348 atomic regions from SNP 19565 to 20166 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,114 DEBUG Processing 29/518 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,118 DEBUG Processing 408/530 atomic regions from SNP 122375 to 122975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,212 DEBUG Processing 67/348 atomic regions from SNP 19866 to 20467 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,321 DEBUG Processing 30/518 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,331 DEBUG Processing 409/530 atomic regions from SNP 122675 to 123275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,372 DEBUG Processing 68/348 atomic regions from SNP 20167 to 20768 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,529 DEBUG Processing 31/518 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,531 DEBUG Processing 69/348 atomic regions from SNP 20468 to 21069 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,555 DEBUG Processing 410/530 atomic regions from SNP 122975 to 123575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,692 DEBUG Processing 70/348 atomic regions from SNP 20769 to 21370 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,736 DEBUG Processing 32/518 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,767 DEBUG Processing 411/530 atomic regions from SNP 123275 to 123875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,850 DEBUG Processing 71/348 atomic regions from SNP 21070 to 21671 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,937 DEBUG Processing 33/518 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,968 DEBUG Processing 412/530 atomic regions from SNP 123575 to 124175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,005 DEBUG Processing 72/348 atomic regions from SNP 21371 to 21972 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,134 DEBUG Processing 34/518 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,163 DEBUG Processing 73/348 atomic regions from SNP 21672 to 22273 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,172 DEBUG Processing 413/530 atomic regions from SNP 123875 to 124475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,324 DEBUG Processing 74/348 atomic regions from SNP 21973 to 22574 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,337 DEBUG Processing 35/518 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,380 DEBUG Processing 414/530 atomic regions from SNP 124175 to 124775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,487 DEBUG Processing 75/348 atomic regions from SNP 22274 to 22875 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,540 DEBUG Processing 36/518 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,584 DEBUG Processing 415/530 atomic regions from SNP 124475 to 125075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,649 DEBUG Processing 76/348 atomic regions from SNP 22575 to 23176 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,735 DEBUG Processing 37/518 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,783 DEBUG Processing 416/530 atomic regions from SNP 124775 to 125375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,804 DEBUG Processing 77/348 atomic regions from SNP 22876 to 23477 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,926 DEBUG Processing 38/518 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,960 DEBUG Processing 78/348 atomic regions from SNP 23177 to 23778 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,984 DEBUG Processing 417/530 atomic regions from SNP 125075 to 125675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,119 DEBUG Processing 39/518 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,123 DEBUG Processing 79/348 atomic regions from SNP 23478 to 24079 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,185 DEBUG Processing 418/530 atomic regions from SNP 125375 to 125975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,285 DEBUG Processing 80/348 atomic regions from SNP 23779 to 24380 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,313 DEBUG Processing 40/518 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,379 DEBUG Processing 419/530 atomic regions from SNP 125675 to 126275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,444 DEBUG Processing 81/348 atomic regions from SNP 24080 to 24681 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,507 DEBUG Processing 41/518 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,575 DEBUG Processing 420/530 atomic regions from SNP 125975 to 126575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,599 DEBUG Processing 82/348 atomic regions from SNP 24381 to 24982 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,703 DEBUG Processing 42/518 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,754 DEBUG Processing 83/348 atomic regions from SNP 24682 to 25283 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,771 DEBUG Processing 421/530 atomic regions from SNP 126275 to 126875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,895 DEBUG Processing 43/518 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,910 DEBUG Processing 84/348 atomic regions from SNP 24983 to 25584 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,969 DEBUG Processing 422/530 atomic regions from SNP 126575 to 127175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,071 DEBUG Processing 85/348 atomic regions from SNP 25284 to 25885 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,114 DEBUG Processing 44/518 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,178 DEBUG Processing 423/530 atomic regions from SNP 126875 to 127475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,235 DEBUG Processing 86/348 atomic regions from SNP 25585 to 26186 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,325 DEBUG Processing 45/518 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,376 DEBUG Processing 424/530 atomic regions from SNP 127175 to 127775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,384 DEBUG Processing 87/348 atomic regions from SNP 25886 to 26487 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,516 DEBUG Processing 46/518 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,542 DEBUG Processing 88/348 atomic regions from SNP 26187 to 26788 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,581 DEBUG Processing 425/530 atomic regions from SNP 127475 to 128075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,704 DEBUG Processing 89/348 atomic regions from SNP 26488 to 27089 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,719 DEBUG Processing 47/518 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,783 DEBUG Processing 426/530 atomic regions from SNP 127775 to 128375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,886 DEBUG Processing 90/348 atomic regions from SNP 26789 to 27390 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,018 DEBUG Processing 48/518 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,108 DEBUG Processing 427/530 atomic regions from SNP 128075 to 128675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,135 DEBUG Processing 91/348 atomic regions from SNP 27090 to 27691 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,204 DEBUG Processing 49/518 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,292 DEBUG Processing 92/348 atomic regions from SNP 27391 to 27992 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,305 DEBUG Processing 428/530 atomic regions from SNP 128375 to 128975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,393 DEBUG Processing 50/518 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,446 DEBUG Processing 93/348 atomic regions from SNP 27692 to 28293 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,505 DEBUG Processing 429/530 atomic regions from SNP 128675 to 129275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,583 DEBUG Processing 51/518 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,601 DEBUG Processing 94/348 atomic regions from SNP 27993 to 28594 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,702 DEBUG Processing 430/530 atomic regions from SNP 128975 to 129575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,756 DEBUG Processing 95/348 atomic regions from SNP 28294 to 28895 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,776 DEBUG Processing 52/518 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,901 DEBUG Processing 431/530 atomic regions from SNP 129275 to 129875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,910 DEBUG Processing 96/348 atomic regions from SNP 28595 to 29196 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,983 DEBUG Processing 53/518 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,073 DEBUG Processing 97/348 atomic regions from SNP 28896 to 29497 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,104 DEBUG Processing 432/530 atomic regions from SNP 129575 to 130175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,201 DEBUG Processing 54/518 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,226 DEBUG Processing 98/348 atomic regions from SNP 29197 to 29798 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,313 DEBUG Processing 433/530 atomic regions from SNP 129875 to 130475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,380 DEBUG Processing 99/348 atomic regions from SNP 29498 to 30099 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,395 DEBUG Processing 55/518 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,514 DEBUG Processing 434/530 atomic regions from SNP 130175 to 130775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,535 DEBUG Processing 100/348 atomic regions from SNP 29799 to 30400 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,589 DEBUG Processing 56/518 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,688 DEBUG Processing 101/348 atomic regions from SNP 30100 to 30701 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,713 DEBUG Processing 435/530 atomic regions from SNP 130475 to 131075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,781 DEBUG Processing 57/518 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,840 DEBUG Processing 102/348 atomic regions from SNP 30401 to 31002 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,909 DEBUG Processing 436/530 atomic regions from SNP 130775 to 131375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,986 DEBUG Processing 58/518 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,993 DEBUG Processing 103/348 atomic regions from SNP 30702 to 31303 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,108 DEBUG Processing 437/530 atomic regions from SNP 131075 to 131675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,144 DEBUG Processing 104/348 atomic regions from SNP 31003 to 31604 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,178 DEBUG Processing 59/518 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,299 DEBUG Processing 105/348 atomic regions from SNP 31304 to 31905 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,313 DEBUG Processing 438/530 atomic regions from SNP 131375 to 131975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,374 DEBUG Processing 60/518 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,457 DEBUG Processing 106/348 atomic regions from SNP 31605 to 32206 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,529 DEBUG Processing 439/530 atomic regions from SNP 131675 to 132275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,580 DEBUG Processing 61/518 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,611 DEBUG Processing 107/348 atomic regions from SNP 31906 to 32507 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,730 DEBUG Processing 440/530 atomic regions from SNP 131975 to 132575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,770 DEBUG Processing 108/348 atomic regions from SNP 32207 to 32808 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,773 DEBUG Processing 62/518 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,924 DEBUG Processing 441/530 atomic regions from SNP 132275 to 132875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,925 DEBUG Processing 109/348 atomic regions from SNP 32508 to 33109 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,963 DEBUG Processing 63/518 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,076 DEBUG Processing 110/348 atomic regions from SNP 32809 to 33410 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,124 DEBUG Processing 442/530 atomic regions from SNP 132575 to 133175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,156 DEBUG Processing 64/518 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,234 DEBUG Processing 111/348 atomic regions from SNP 33110 to 33711 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,326 DEBUG Processing 443/530 atomic regions from SNP 132875 to 133475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,351 DEBUG Processing 65/518 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,386 DEBUG Processing 112/348 atomic regions from SNP 33411 to 34012 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,531 DEBUG Processing 444/530 atomic regions from SNP 133175 to 133775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,541 DEBUG Processing 66/518 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,545 DEBUG Processing 113/348 atomic regions from SNP 33712 to 34313 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,698 DEBUG Processing 114/348 atomic regions from SNP 34013 to 34614 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,732 DEBUG Processing 67/518 atomic regions from SNP 19866 to 20466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,741 DEBUG Processing 445/530 atomic regions from SNP 133475 to 134075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,853 DEBUG Processing 115/348 atomic regions from SNP 34314 to 34915 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,921 DEBUG Processing 68/518 atomic regions from SNP 20166 to 20766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,943 DEBUG Processing 446/530 atomic regions from SNP 133775 to 134375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,003 DEBUG Processing 116/348 atomic regions from SNP 34615 to 35216 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,108 DEBUG Processing 69/518 atomic regions from SNP 20466 to 21066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,150 DEBUG Processing 447/530 atomic regions from SNP 134075 to 134675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,164 DEBUG Processing 117/348 atomic regions from SNP 34916 to 35517 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,292 DEBUG Processing 70/518 atomic regions from SNP 20766 to 21366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,346 DEBUG Processing 118/348 atomic regions from SNP 35217 to 35818 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,351 DEBUG Processing 448/530 atomic regions from SNP 134375 to 134975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,486 DEBUG Processing 71/518 atomic regions from SNP 21066 to 21666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,500 DEBUG Processing 119/348 atomic regions from SNP 35518 to 36119 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,554 DEBUG Processing 449/530 atomic regions from SNP 134675 to 135275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,656 DEBUG Processing 120/348 atomic regions from SNP 35819 to 36420 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,677 DEBUG Processing 72/518 atomic regions from SNP 21366 to 21966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,753 DEBUG Processing 450/530 atomic regions from SNP 134975 to 135575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,816 DEBUG Processing 121/348 atomic regions from SNP 36120 to 36721 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,869 DEBUG Processing 73/518 atomic regions from SNP 21666 to 22266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,956 DEBUG Processing 451/530 atomic regions from SNP 135275 to 135875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,979 DEBUG Processing 122/348 atomic regions from SNP 36421 to 37022 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,061 DEBUG Processing 74/518 atomic regions from SNP 21966 to 22566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,147 DEBUG Processing 123/348 atomic regions from SNP 36722 to 37323 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,159 DEBUG Processing 452/530 atomic regions from SNP 135575 to 136175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,257 DEBUG Processing 75/518 atomic regions from SNP 22266 to 22866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,320 DEBUG Processing 124/348 atomic regions from SNP 37023 to 37624 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,367 DEBUG Processing 453/530 atomic regions from SNP 135875 to 136475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,447 DEBUG Processing 76/518 atomic regions from SNP 22566 to 23166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,496 DEBUG Processing 125/348 atomic regions from SNP 37324 to 37925 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,559 DEBUG Processing 454/530 atomic regions from SNP 136175 to 136775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,639 DEBUG Processing 77/518 atomic regions from SNP 22866 to 23466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,671 DEBUG Processing 126/348 atomic regions from SNP 37625 to 38226 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,758 DEBUG Processing 455/530 atomic regions from SNP 136475 to 137075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,843 DEBUG Processing 78/518 atomic regions from SNP 23166 to 23766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,854 DEBUG Processing 127/348 atomic regions from SNP 37926 to 38527 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,967 DEBUG Processing 456/530 atomic regions from SNP 136775 to 137375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,016 DEBUG Processing 128/348 atomic regions from SNP 38227 to 38828 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,040 DEBUG Processing 79/518 atomic regions from SNP 23466 to 24066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,166 DEBUG Processing 457/530 atomic regions from SNP 137075 to 137675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,174 DEBUG Processing 129/348 atomic regions from SNP 38528 to 39129 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,237 DEBUG Processing 80/518 atomic regions from SNP 23766 to 24366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,346 DEBUG Processing 130/348 atomic regions from SNP 38829 to 39430 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,377 DEBUG Processing 458/530 atomic regions from SNP 137375 to 137975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,438 DEBUG Processing 81/518 atomic regions from SNP 24066 to 24666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,519 DEBUG Processing 131/348 atomic regions from SNP 39130 to 39731 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,602 DEBUG Processing 459/530 atomic regions from SNP 137675 to 138275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,655 DEBUG Processing 82/518 atomic regions from SNP 24366 to 24966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,700 DEBUG Processing 132/348 atomic regions from SNP 39431 to 40032 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,846 DEBUG Processing 460/530 atomic regions from SNP 137975 to 138575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,879 DEBUG Processing 83/518 atomic regions from SNP 24666 to 25266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,896 DEBUG Processing 133/348 atomic regions from SNP 39732 to 40333 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,206 DEBUG Processing 134/348 atomic regions from SNP 40033 to 40634 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,218 DEBUG Processing 461/530 atomic regions from SNP 138275 to 138875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,223 DEBUG Processing 84/518 atomic regions from SNP 24966 to 25566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,386 DEBUG Processing 135/348 atomic regions from SNP 40334 to 40935 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,443 DEBUG Processing 462/530 atomic regions from SNP 138575 to 139175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,444 DEBUG Processing 85/518 atomic regions from SNP 25266 to 25866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,557 DEBUG Processing 136/348 atomic regions from SNP 40635 to 41236 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,663 DEBUG Processing 86/518 atomic regions from SNP 25566 to 26166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,674 DEBUG Processing 463/530 atomic regions from SNP 138875 to 139475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,732 DEBUG Processing 137/348 atomic regions from SNP 40936 to 41537 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,949 DEBUG Processing 87/518 atomic regions from SNP 25866 to 26466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,969 DEBUG Processing 464/530 atomic regions from SNP 139175 to 139775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,032 DEBUG Processing 138/348 atomic regions from SNP 41237 to 41838 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,164 DEBUG Processing 88/518 atomic regions from SNP 26166 to 26766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,195 DEBUG Processing 465/530 atomic regions from SNP 139475 to 140075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,202 DEBUG Processing 139/348 atomic regions from SNP 41538 to 42139 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,372 DEBUG Processing 89/518 atomic regions from SNP 26466 to 27066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,373 DEBUG Processing 140/348 atomic regions from SNP 41839 to 42440 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,434 DEBUG Processing 466/530 atomic regions from SNP 139775 to 140375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,547 DEBUG Processing 141/348 atomic regions from SNP 42140 to 42741 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,593 DEBUG Processing 90/518 atomic regions from SNP 26766 to 27366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,717 DEBUG Processing 467/530 atomic regions from SNP 140075 to 140675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,911 DEBUG Processing 142/348 atomic regions from SNP 42441 to 43042 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,050 DEBUG Processing 91/518 atomic regions from SNP 27066 to 27666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,109 DEBUG Processing 143/348 atomic regions from SNP 42742 to 43343 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,203 DEBUG Processing 468/530 atomic regions from SNP 140375 to 140975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,313 DEBUG Processing 92/518 atomic regions from SNP 27366 to 27966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,338 DEBUG Processing 144/348 atomic regions from SNP 43043 to 43644 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,464 DEBUG Processing 469/530 atomic regions from SNP 140675 to 141275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,585 DEBUG Processing 93/518 atomic regions from SNP 27666 to 28266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,589 DEBUG Processing 145/348 atomic regions from SNP 43344 to 43945 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,759 DEBUG Processing 470/530 atomic regions from SNP 140975 to 141575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,849 DEBUG Processing 146/348 atomic regions from SNP 43645 to 44246 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,905 DEBUG Processing 94/518 atomic regions from SNP 27966 to 28566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,029 DEBUG Processing 471/530 atomic regions from SNP 141275 to 141875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,037 DEBUG Processing 147/348 atomic regions from SNP 43946 to 44547 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,114 DEBUG Processing 95/518 atomic regions from SNP 28266 to 28866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,257 DEBUG Processing 148/348 atomic regions from SNP 44247 to 44848 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,277 DEBUG Processing 472/530 atomic regions from SNP 141575 to 142175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,396 DEBUG Processing 96/518 atomic regions from SNP 28566 to 29166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,547 DEBUG Processing 149/348 atomic regions from SNP 44548 to 45149 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,611 DEBUG Processing 473/530 atomic regions from SNP 141875 to 142475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,681 DEBUG Processing 97/518 atomic regions from SNP 28866 to 29466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,712 DEBUG Processing 150/348 atomic regions from SNP 44849 to 45450 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,822 DEBUG Processing 474/530 atomic regions from SNP 142175 to 142775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,868 DEBUG Processing 151/348 atomic regions from SNP 45150 to 45751 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,880 DEBUG Processing 98/518 atomic regions from SNP 29166 to 29766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,114 DEBUG Processing 475/530 atomic regions from SNP 142475 to 143075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,127 DEBUG Processing 152/348 atomic regions from SNP 45451 to 46052 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,173 DEBUG Processing 99/518 atomic regions from SNP 29466 to 30066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,427 DEBUG Processing 476/530 atomic regions from SNP 142775 to 143375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,433 DEBUG Processing 153/348 atomic regions from SNP 45752 to 46353 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,501 DEBUG Processing 100/518 atomic regions from SNP 29766 to 30366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,632 DEBUG Processing 154/348 atomic regions from SNP 46053 to 46654 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,645 DEBUG Processing 477/530 atomic regions from SNP 143075 to 143675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,705 DEBUG Processing 101/518 atomic regions from SNP 30066 to 30666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,801 DEBUG Processing 155/348 atomic regions from SNP 46354 to 46955 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,859 DEBUG Processing 478/530 atomic regions from SNP 143375 to 143975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,926 DEBUG Processing 102/518 atomic regions from SNP 30366 to 30966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,038 DEBUG Processing 156/348 atomic regions from SNP 46655 to 47256 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,089 DEBUG Processing 479/530 atomic regions from SNP 143675 to 144275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,128 DEBUG Processing 103/518 atomic regions from SNP 30666 to 31266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,198 DEBUG Processing 157/348 atomic regions from SNP 46956 to 47557 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,300 DEBUG Processing 480/530 atomic regions from SNP 143975 to 144575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,336 DEBUG Processing 104/518 atomic regions from SNP 30966 to 31566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,409 DEBUG Processing 158/348 atomic regions from SNP 47257 to 47858 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,624 DEBUG Processing 481/530 atomic regions from SNP 144275 to 144875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,689 DEBUG Processing 105/518 atomic regions from SNP 31266 to 31866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,690 DEBUG Processing 159/348 atomic regions from SNP 47558 to 48159 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,856 DEBUG Processing 160/348 atomic regions from SNP 47859 to 48460 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,874 DEBUG Processing 482/530 atomic regions from SNP 144575 to 145175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,892 DEBUG Processing 106/518 atomic regions from SNP 31566 to 32166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,094 DEBUG Processing 161/348 atomic regions from SNP 48160 to 48761 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,168 DEBUG Processing 107/518 atomic regions from SNP 31866 to 32466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,208 DEBUG Processing 483/530 atomic regions from SNP 144875 to 145475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,279 DEBUG Processing 162/348 atomic regions from SNP 48461 to 49062 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,371 DEBUG Processing 108/518 atomic regions from SNP 32166 to 32766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,420 DEBUG Processing 484/530 atomic regions from SNP 145175 to 145775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,447 DEBUG Processing 163/348 atomic regions from SNP 48762 to 49363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,694 DEBUG Processing 109/518 atomic regions from SNP 32466 to 33066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,695 DEBUG Processing 164/348 atomic regions from SNP 49063 to 49663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,718 DEBUG Processing 485/530 atomic regions from SNP 145475 to 146075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,852 DEBUG Processing 165/348 atomic regions from SNP 49363 to 49963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,878 DEBUG Processing 110/518 atomic regions from SNP 32766 to 33366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,917 DEBUG Processing 486/530 atomic regions from SNP 145775 to 146375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,998 DEBUG Processing 166/348 atomic regions from SNP 49663 to 50263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,057 DEBUG Processing 111/518 atomic regions from SNP 33066 to 33666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,122 DEBUG Processing 487/530 atomic regions from SNP 146075 to 146675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,145 DEBUG Processing 167/348 atomic regions from SNP 49963 to 50563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,236 DEBUG Processing 112/518 atomic regions from SNP 33366 to 33966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,290 DEBUG Processing 168/348 atomic regions from SNP 50263 to 50863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,329 DEBUG Processing 488/530 atomic regions from SNP 146375 to 146975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,418 DEBUG Processing 113/518 atomic regions from SNP 33666 to 34266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,437 DEBUG Processing 169/348 atomic regions from SNP 50563 to 51163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,550 DEBUG Processing 489/530 atomic regions from SNP 146675 to 147275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,589 DEBUG Processing 170/348 atomic regions from SNP 50863 to 51463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,609 DEBUG Processing 114/518 atomic regions from SNP 33966 to 34566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,849 DEBUG Processing 490/530 atomic regions from SNP 146975 to 147575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,850 DEBUG Processing 171/348 atomic regions from SNP 51163 to 51763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,913 DEBUG Processing 115/518 atomic regions from SNP 34266 to 34866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,101 DEBUG Processing 172/348 atomic regions from SNP 51463 to 52063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,141 DEBUG Processing 491/530 atomic regions from SNP 147275 to 147875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,220 DEBUG Processing 116/518 atomic regions from SNP 34566 to 35166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,395 DEBUG Processing 173/348 atomic regions from SNP 51763 to 52363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,449 DEBUG Processing 492/530 atomic regions from SNP 147575 to 148175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,519 DEBUG Processing 117/518 atomic regions from SNP 34866 to 35466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,601 DEBUG Processing 174/348 atomic regions from SNP 52063 to 52663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,665 DEBUG Processing 493/530 atomic regions from SNP 147875 to 148475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,715 DEBUG Processing 118/518 atomic regions from SNP 35166 to 35766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,777 DEBUG Processing 175/348 atomic regions from SNP 52363 to 52963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,856 DEBUG Processing 494/530 atomic regions from SNP 148175 to 148775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,903 DEBUG Processing 119/518 atomic regions from SNP 35466 to 36066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,958 DEBUG Processing 176/348 atomic regions from SNP 52663 to 53263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,131 DEBUG Processing 495/530 atomic regions from SNP 148475 to 149075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,137 DEBUG Processing 120/518 atomic regions from SNP 35766 to 36366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,141 DEBUG Processing 177/348 atomic regions from SNP 52963 to 53563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,301 DEBUG Processing 178/348 atomic regions from SNP 53263 to 53863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,332 DEBUG Processing 121/518 atomic regions from SNP 36066 to 36666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,342 DEBUG Processing 496/530 atomic regions from SNP 148775 to 149375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,521 DEBUG Processing 179/348 atomic regions from SNP 53563 to 54163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,568 DEBUG Processing 497/530 atomic regions from SNP 149075 to 149675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,572 DEBUG Processing 122/518 atomic regions from SNP 36366 to 36966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,716 DEBUG Processing 180/348 atomic regions from SNP 53863 to 54463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,829 DEBUG Processing 498/530 atomic regions from SNP 149375 to 149975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,861 DEBUG Processing 123/518 atomic regions from SNP 36666 to 37266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,971 DEBUG Processing 181/348 atomic regions from SNP 54163 to 54763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,135 DEBUG Processing 499/530 atomic regions from SNP 149675 to 150275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,242 DEBUG Processing 124/518 atomic regions from SNP 36966 to 37566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,283 DEBUG Processing 182/348 atomic regions from SNP 54463 to 55063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,413 DEBUG Processing 500/530 atomic regions from SNP 149975 to 150575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,545 DEBUG Processing 183/348 atomic regions from SNP 54763 to 55363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,547 DEBUG Processing 125/518 atomic regions from SNP 37266 to 37866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,771 DEBUG Processing 501/530 atomic regions from SNP 150275 to 150875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,777 DEBUG Processing 184/348 atomic regions from SNP 55063 to 55663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,820 DEBUG Processing 126/518 atomic regions from SNP 37566 to 38166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,926 DEBUG Processing 185/348 atomic regions from SNP 55363 to 55963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,964 DEBUG Processing 502/530 atomic regions from SNP 150575 to 151175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,008 DEBUG Processing 127/518 atomic regions from SNP 37866 to 38466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,114 DEBUG Processing 186/348 atomic regions from SNP 55663 to 56263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,176 DEBUG Processing 503/530 atomic regions from SNP 150875 to 151475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,212 DEBUG Processing 128/518 atomic regions from SNP 38166 to 38766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,259 DEBUG Processing 187/348 atomic regions from SNP 55963 to 56563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,363 DEBUG Processing 504/530 atomic regions from SNP 151175 to 151775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,395 DEBUG Processing 129/518 atomic regions from SNP 38466 to 39066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,408 DEBUG Processing 188/348 atomic regions from SNP 56263 to 56863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,548 DEBUG Processing 505/530 atomic regions from SNP 151475 to 152075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,559 DEBUG Processing 189/348 atomic regions from SNP 56563 to 57163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,576 DEBUG Processing 130/518 atomic regions from SNP 38766 to 39366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,710 DEBUG Processing 190/348 atomic regions from SNP 56863 to 57463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,737 DEBUG Processing 506/530 atomic regions from SNP 151775 to 152375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,757 DEBUG Processing 131/518 atomic regions from SNP 39066 to 39666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,859 DEBUG Processing 191/348 atomic regions from SNP 57163 to 57763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,924 DEBUG Processing 507/530 atomic regions from SNP 152075 to 152675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,935 DEBUG Processing 132/518 atomic regions from SNP 39366 to 39966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,003 DEBUG Processing 192/348 atomic regions from SNP 57463 to 58063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,107 DEBUG Processing 508/530 atomic regions from SNP 152375 to 152975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,114 DEBUG Processing 133/518 atomic regions from SNP 39666 to 40266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,147 DEBUG Processing 193/348 atomic regions from SNP 57763 to 58363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,293 DEBUG Processing 194/348 atomic regions from SNP 58063 to 58663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,293 DEBUG Processing 509/530 atomic regions from SNP 152675 to 153275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,295 DEBUG Processing 134/518 atomic regions from SNP 39966 to 40566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,438 DEBUG Processing 195/348 atomic regions from SNP 58363 to 58963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,477 DEBUG Processing 135/518 atomic regions from SNP 40266 to 40866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,480 DEBUG Processing 510/530 atomic regions from SNP 152975 to 153575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,580 DEBUG Processing 196/348 atomic regions from SNP 58663 to 59263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,656 DEBUG Processing 136/518 atomic regions from SNP 40566 to 41166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,666 DEBUG Processing 511/530 atomic regions from SNP 153275 to 153875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,722 DEBUG Processing 197/348 atomic regions from SNP 58963 to 59563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,833 DEBUG Processing 137/518 atomic regions from SNP 40866 to 41466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,850 DEBUG Processing 512/530 atomic regions from SNP 153575 to 154175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,866 DEBUG Processing 198/348 atomic regions from SNP 59263 to 59863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,009 DEBUG Processing 138/518 atomic regions from SNP 41166 to 41766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,010 DEBUG Processing 199/348 atomic regions from SNP 59563 to 60163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,034 DEBUG Processing 513/530 atomic regions from SNP 153875 to 154475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,155 DEBUG Processing 200/348 atomic regions from SNP 59863 to 60463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,186 DEBUG Processing 139/518 atomic regions from SNP 41466 to 42066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,216 DEBUG Processing 514/530 atomic regions from SNP 154175 to 154775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,310 DEBUG Processing 201/348 atomic regions from SNP 60163 to 60763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,370 DEBUG Processing 140/518 atomic regions from SNP 41766 to 42366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,410 DEBUG Processing 515/530 atomic regions from SNP 154475 to 155075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,460 DEBUG Processing 202/348 atomic regions from SNP 60463 to 61063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,553 DEBUG Processing 141/518 atomic regions from SNP 42066 to 42666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,600 DEBUG Processing 516/530 atomic regions from SNP 154775 to 155375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,626 DEBUG Processing 203/348 atomic regions from SNP 60763 to 61363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,736 DEBUG Processing 142/518 atomic regions from SNP 42366 to 42966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,793 DEBUG Processing 204/348 atomic regions from SNP 61063 to 61663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,794 DEBUG Processing 517/530 atomic regions from SNP 155075 to 155675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,912 DEBUG Processing 143/518 atomic regions from SNP 42666 to 43266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,937 DEBUG Processing 205/348 atomic regions from SNP 61363 to 61963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,978 DEBUG Processing 518/530 atomic regions from SNP 155375 to 155975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,082 DEBUG Processing 206/348 atomic regions from SNP 61663 to 62263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,089 DEBUG Processing 144/518 atomic regions from SNP 42966 to 43566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,161 DEBUG Processing 519/530 atomic regions from SNP 155675 to 156275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,226 DEBUG Processing 207/348 atomic regions from SNP 61963 to 62563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,267 DEBUG Processing 145/518 atomic regions from SNP 43266 to 43866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,351 DEBUG Processing 520/530 atomic regions from SNP 155975 to 156575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,372 DEBUG Processing 208/348 atomic regions from SNP 62263 to 62863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,454 DEBUG Processing 146/518 atomic regions from SNP 43566 to 44166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,524 DEBUG Processing 209/348 atomic regions from SNP 62563 to 63163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,540 DEBUG Processing 521/530 atomic regions from SNP 156275 to 156875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,632 DEBUG Processing 147/518 atomic regions from SNP 43866 to 44466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,670 DEBUG Processing 210/348 atomic regions from SNP 62863 to 63463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,724 DEBUG Processing 522/530 atomic regions from SNP 156575 to 157175 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,814 DEBUG Processing 148/518 atomic regions from SNP 44166 to 44766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,818 DEBUG Processing 211/348 atomic regions from SNP 63163 to 63763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,909 DEBUG Processing 523/530 atomic regions from SNP 156875 to 157475 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,962 DEBUG Processing 212/348 atomic regions from SNP 63463 to 64063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,989 DEBUG Processing 149/518 atomic regions from SNP 44466 to 45066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,092 DEBUG Processing 524/530 atomic regions from SNP 157175 to 157775 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,108 DEBUG Processing 213/348 atomic regions from SNP 63763 to 64363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,163 DEBUG Processing 150/518 atomic regions from SNP 44766 to 45366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,253 DEBUG Processing 214/348 atomic regions from SNP 64063 to 64663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,273 DEBUG Processing 525/530 atomic regions from SNP 157475 to 158075 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,336 DEBUG Processing 151/518 atomic regions from SNP 45066 to 45666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,399 DEBUG Processing 215/348 atomic regions from SNP 64363 to 64963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,456 DEBUG Processing 526/530 atomic regions from SNP 157775 to 158375 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,508 DEBUG Processing 152/518 atomic regions from SNP 45366 to 45966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,544 DEBUG Processing 216/348 atomic regions from SNP 64663 to 65263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,642 DEBUG Processing 527/530 atomic regions from SNP 158075 to 158675 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,686 DEBUG Processing 153/518 atomic regions from SNP 45666 to 46266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,691 DEBUG Processing 217/348 atomic regions from SNP 64963 to 65563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,830 DEBUG Processing 528/530 atomic regions from SNP 158375 to 158975 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,847 DEBUG Processing 218/348 atomic regions from SNP 65263 to 65863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,867 DEBUG Processing 154/518 atomic regions from SNP 45966 to 46566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,995 DEBUG Processing 219/348 atomic regions from SNP 65563 to 66163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,014 DEBUG Processing 529/530 atomic regions from SNP 158675 to 159275 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,046 DEBUG Processing 155/518 atomic regions from SNP 46266 to 46866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,139 DEBUG Processing 220/348 atomic regions from SNP 65863 to 66463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,197 DEBUG Processing 530/530 atomic regions from SNP 158975 to 159575 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,220 DEBUG Processing 156/518 atomic regions from SNP 46566 to 47166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,296 DEBUG Processing 221/348 atomic regions from SNP 66163 to 66763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,318 DEBUG Unique SNPs positions in subchromosome 1: 159576 2025-01-31 09:59:28,400 DEBUG Processing 157/518 atomic regions from SNP 46866 to 47466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,461 DEBUG Processing 222/348 atomic regions from SNP 66463 to 67063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,574 DEBUG Processing 158/518 atomic regions from SNP 47166 to 47766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,615 DEBUG Processing 223/348 atomic regions from SNP 66763 to 67363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,747 DEBUG Processing 159/518 atomic regions from SNP 47466 to 48066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,772 DEBUG Processing 224/348 atomic regions from SNP 67063 to 67663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,914 DEBUG Processing 225/348 atomic regions from SNP 67363 to 67963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,920 DEBUG Processing 160/518 atomic regions from SNP 47766 to 48366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,058 DEBUG Processing 226/348 atomic regions from SNP 67663 to 68263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,093 DEBUG Processing 161/518 atomic regions from SNP 48066 to 48666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,202 DEBUG Processing 227/348 atomic regions from SNP 67963 to 68563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,269 DEBUG Processing 162/518 atomic regions from SNP 48366 to 48966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,352 DEBUG Processing 228/348 atomic regions from SNP 68263 to 68863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,446 DEBUG Processing 163/518 atomic regions from SNP 48666 to 49266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,518 DEBUG Processing 229/348 atomic regions from SNP 68563 to 69163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,621 DEBUG Processing 164/518 atomic regions from SNP 48966 to 49566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,692 DEBUG Processing 230/348 atomic regions from SNP 68863 to 69463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,793 DEBUG Processing 165/518 atomic regions from SNP 49266 to 49866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,860 DEBUG Processing 231/348 atomic regions from SNP 69163 to 69763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,964 DEBUG Processing 166/518 atomic regions from SNP 49566 to 50166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,030 DEBUG Processing 232/348 atomic regions from SNP 69463 to 70063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,157 DEBUG Processing 167/518 atomic regions from SNP 49866 to 50466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,183 DEBUG Processing 233/348 atomic regions from SNP 69763 to 70363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,331 DEBUG Processing 234/348 atomic regions from SNP 70063 to 70663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,374 DEBUG Processing 168/518 atomic regions from SNP 50166 to 50766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,481 DEBUG Processing 235/348 atomic regions from SNP 70363 to 70963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,573 DEBUG Processing 169/518 atomic regions from SNP 50466 to 51066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,633 DEBUG Processing 236/348 atomic regions from SNP 70663 to 71263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,762 DEBUG Processing 170/518 atomic regions from SNP 50766 to 51366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,782 DEBUG Processing 237/348 atomic regions from SNP 70963 to 71563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,926 DEBUG Processing 238/348 atomic regions from SNP 71263 to 71863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,940 DEBUG Processing 171/518 atomic regions from SNP 51066 to 51666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,071 DEBUG Processing 239/348 atomic regions from SNP 71563 to 72163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,117 DEBUG Processing 172/518 atomic regions from SNP 51366 to 51966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,229 DEBUG Processing 240/348 atomic regions from SNP 71863 to 72463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,303 DEBUG Processing 173/518 atomic regions from SNP 51666 to 52266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,396 DEBUG Processing 241/348 atomic regions from SNP 72163 to 72763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,478 DEBUG Processing 174/518 atomic regions from SNP 51966 to 52566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,557 DEBUG Processing 242/348 atomic regions from SNP 72463 to 73063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,653 DEBUG Processing 175/518 atomic regions from SNP 52266 to 52866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,704 DEBUG Processing 243/348 atomic regions from SNP 72763 to 73363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,828 DEBUG Processing 176/518 atomic regions from SNP 52566 to 53166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,846 DEBUG Processing 244/348 atomic regions from SNP 73063 to 73663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,003 DEBUG Processing 177/518 atomic regions from SNP 52866 to 53466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,021 DEBUG Processing 245/348 atomic regions from SNP 73363 to 73963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,181 DEBUG Processing 178/518 atomic regions from SNP 53166 to 53766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,197 DEBUG Processing 246/348 atomic regions from SNP 73663 to 74263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,359 DEBUG Processing 179/518 atomic regions from SNP 53466 to 54066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,365 DEBUG Processing 247/348 atomic regions from SNP 73963 to 74563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,513 DEBUG Processing 248/348 atomic regions from SNP 74263 to 74863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,541 DEBUG Processing 180/518 atomic regions from SNP 53766 to 54366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,666 DEBUG Processing 249/348 atomic regions from SNP 74563 to 75163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,723 DEBUG Processing 181/518 atomic regions from SNP 54066 to 54666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,846 DEBUG Processing 250/348 atomic regions from SNP 74863 to 75463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,904 DEBUG Processing 182/518 atomic regions from SNP 54366 to 54966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,021 DEBUG Processing 251/348 atomic regions from SNP 75163 to 75763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,100 DEBUG Processing 183/518 atomic regions from SNP 54666 to 55266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,178 DEBUG Processing 252/348 atomic regions from SNP 75463 to 76063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,304 DEBUG Processing 184/518 atomic regions from SNP 54966 to 55566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,348 DEBUG Processing 253/348 atomic regions from SNP 75763 to 76363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,506 DEBUG Processing 185/518 atomic regions from SNP 55266 to 55866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,526 DEBUG Processing 254/348 atomic regions from SNP 76063 to 76663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,685 DEBUG Processing 255/348 atomic regions from SNP 76363 to 76963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,717 DEBUG Processing 186/518 atomic regions from SNP 55566 to 56166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,852 DEBUG Processing 256/348 atomic regions from SNP 76663 to 77263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,923 DEBUG Processing 187/518 atomic regions from SNP 55866 to 56466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,015 DEBUG Processing 257/348 atomic regions from SNP 76963 to 77563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,123 DEBUG Processing 188/518 atomic regions from SNP 56166 to 56766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,190 DEBUG Processing 258/348 atomic regions from SNP 77263 to 77863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,312 DEBUG Processing 189/518 atomic regions from SNP 56466 to 57066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,366 DEBUG Processing 259/348 atomic regions from SNP 77563 to 78163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,484 DEBUG Processing 190/518 atomic regions from SNP 56766 to 57366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,541 DEBUG Processing 260/348 atomic regions from SNP 77863 to 78463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,693 DEBUG Processing 191/518 atomic regions from SNP 57066 to 57666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,719 DEBUG Processing 261/348 atomic regions from SNP 78163 to 78763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,887 DEBUG Processing 262/348 atomic regions from SNP 78463 to 79063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,903 DEBUG Processing 192/518 atomic regions from SNP 57366 to 57966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,065 DEBUG Processing 263/348 atomic regions from SNP 78763 to 79363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,112 DEBUG Processing 193/518 atomic regions from SNP 57666 to 58266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,233 DEBUG Processing 264/348 atomic regions from SNP 79063 to 79663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,326 DEBUG Processing 194/518 atomic regions from SNP 57966 to 58566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,401 DEBUG Processing 265/348 atomic regions from SNP 79363 to 79963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,529 DEBUG Processing 195/518 atomic regions from SNP 58266 to 58866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,557 DEBUG Processing 266/348 atomic regions from SNP 79663 to 80263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,708 DEBUG Processing 267/348 atomic regions from SNP 79963 to 80563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,748 DEBUG Processing 196/518 atomic regions from SNP 58566 to 59166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,852 DEBUG Processing 268/348 atomic regions from SNP 80263 to 80863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,954 DEBUG Processing 197/518 atomic regions from SNP 58866 to 59466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,994 DEBUG Processing 269/348 atomic regions from SNP 80563 to 81163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,141 DEBUG Processing 270/348 atomic regions from SNP 80863 to 81463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,166 DEBUG Processing 198/518 atomic regions from SNP 59166 to 59766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,289 DEBUG Processing 271/348 atomic regions from SNP 81163 to 81763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,382 DEBUG Processing 199/518 atomic regions from SNP 59466 to 60066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,434 DEBUG Processing 272/348 atomic regions from SNP 81463 to 82063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,574 DEBUG Processing 200/518 atomic regions from SNP 59766 to 60366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,580 DEBUG Processing 273/348 atomic regions from SNP 81763 to 82363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,727 DEBUG Processing 274/348 atomic regions from SNP 82063 to 82663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,756 DEBUG Processing 201/518 atomic regions from SNP 60066 to 60666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,872 DEBUG Processing 275/348 atomic regions from SNP 82363 to 82963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,936 DEBUG Processing 202/518 atomic regions from SNP 60366 to 60966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,014 DEBUG Processing 276/348 atomic regions from SNP 82663 to 83263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,137 DEBUG Processing 203/518 atomic regions from SNP 60666 to 61266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,164 DEBUG Processing 277/348 atomic regions from SNP 82963 to 83563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,308 DEBUG Processing 278/348 atomic regions from SNP 83263 to 83863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,319 DEBUG Processing 204/518 atomic regions from SNP 60966 to 61566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,454 DEBUG Processing 279/348 atomic regions from SNP 83563 to 84163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,512 DEBUG Processing 205/518 atomic regions from SNP 61266 to 61866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,600 DEBUG Processing 280/348 atomic regions from SNP 83863 to 84463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,719 DEBUG Processing 206/518 atomic regions from SNP 61566 to 62166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,744 DEBUG Processing 281/348 atomic regions from SNP 84163 to 84763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,886 DEBUG Processing 282/348 atomic regions from SNP 84463 to 85063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,924 DEBUG Processing 207/518 atomic regions from SNP 61866 to 62466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,033 DEBUG Processing 283/348 atomic regions from SNP 84763 to 85363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,131 DEBUG Processing 208/518 atomic regions from SNP 62166 to 62766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,179 DEBUG Processing 284/348 atomic regions from SNP 85063 to 85663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,254 DEBUG Subchromosome time: 140.3864037989406, subchromosome SNPs: 159576 2025-01-31 09:59:38,255 DEBUG Estimated BADs: [2.53, 0.63, 10.12, 5.06, 12.66, 2.53, 0.36, 0.84, 2.53, 7.59, 1.27, 0.51, 10.12, 0.84, 2.53, 0.51, 2.53, 0.36, 2.53, 5.06, 0.36] SNP counts: [20917, 11476, 11049, 8109, 4518, 1218, 5096, 6347, 2482, 5940, 9126, 3545, 2713, 8333, 24915, 3282, 6295, 2399, 1816, 10479, 9521] SNP IDs counts: [20917, 11476, 11049, 8109, 4518, 1218, 5096, 6347, 2482, 5940, 9126, 3545, 2713, 8333, 24915, 3282, 6295, 2399, 1816, 10479, 9521] Critical gap: 528123bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.84Mbp, 23.52Mbp, 29.37Mbp, 33.82Mbp, 36.37Mbp, 37.09Mbp, 40.46Mbp, 44.19Mbp, 45.52Mbp, 48.65Mbp, 53.69Mbp, 55.93Mbp, 57.35Mbp, 62.21Mbp, 75.92Mbp, 77.81Mbp, 81.20Mbp, 82.61Mbp, 83.64Mbp, 89.18Mbp, 94.99Mbp] 2025-01-31 09:59:38,255 DEBUG chr17 time: 140.3869134580018 s 2025-01-31 09:59:38,328 DEBUG Processing 285/348 atomic regions from SNP 85363 to 85963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,330 DEBUG Processing 209/518 atomic regions from SNP 62466 to 63066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,346 DEBUG chr17: Fitting background model for 21 segments 2025-01-31 09:59:38,473 DEBUG Processing 286/348 atomic regions from SNP 85663 to 86263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,515 DEBUG Processing 210/518 atomic regions from SNP 62766 to 63366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,622 DEBUG Processing 287/348 atomic regions from SNP 85963 to 86563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,692 DEBUG Processing 211/518 atomic regions from SNP 63066 to 63666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,767 DEBUG Processing 288/348 atomic regions from SNP 86263 to 86863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,872 DEBUG Processing 212/518 atomic regions from SNP 63366 to 63966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,913 DEBUG Processing 289/348 atomic regions from SNP 86563 to 87163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,052 DEBUG Processing 213/518 atomic regions from SNP 63666 to 64266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,061 DEBUG Processing 290/348 atomic regions from SNP 86863 to 87463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,208 DEBUG Processing 291/348 atomic regions from SNP 87163 to 87763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,228 DEBUG Processing 214/518 atomic regions from SNP 63966 to 64566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,352 DEBUG Processing 292/348 atomic regions from SNP 87463 to 88063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,416 DEBUG Processing 215/518 atomic regions from SNP 64266 to 64866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,497 DEBUG Processing 293/348 atomic regions from SNP 87763 to 88363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,600 DEBUG Processing 216/518 atomic regions from SNP 64566 to 65166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,645 DEBUG Processing 294/348 atomic regions from SNP 88063 to 88663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,787 DEBUG Processing 217/518 atomic regions from SNP 64866 to 65466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,789 DEBUG Processing 295/348 atomic regions from SNP 88363 to 88963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,935 DEBUG Processing 296/348 atomic regions from SNP 88663 to 89263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,971 DEBUG Processing 218/518 atomic regions from SNP 65166 to 65766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,079 DEBUG Processing 297/348 atomic regions from SNP 88963 to 89563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,150 DEBUG Processing 219/518 atomic regions from SNP 65466 to 66066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,224 DEBUG Processing 298/348 atomic regions from SNP 89263 to 89863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,329 DEBUG Processing 220/518 atomic regions from SNP 65766 to 66366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,388 DEBUG Processing 299/348 atomic regions from SNP 89563 to 90163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,505 DEBUG Processing 221/518 atomic regions from SNP 66066 to 66666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,563 DEBUG Processing 300/348 atomic regions from SNP 89863 to 90463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,686 DEBUG Processing 222/518 atomic regions from SNP 66366 to 66966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,729 DEBUG Processing 301/348 atomic regions from SNP 90163 to 90763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,870 DEBUG Processing 223/518 atomic regions from SNP 66666 to 67266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,886 DEBUG Processing 302/348 atomic regions from SNP 90463 to 91063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,049 DEBUG Processing 224/518 atomic regions from SNP 66966 to 67566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,059 DEBUG Processing 303/348 atomic regions from SNP 90763 to 91363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,228 DEBUG Processing 225/518 atomic regions from SNP 67266 to 67866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,232 DEBUG Processing 304/348 atomic regions from SNP 91063 to 91663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,382 DEBUG Processing 305/348 atomic regions from SNP 91363 to 91963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,409 DEBUG Processing 226/518 atomic regions from SNP 67566 to 68166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,529 DEBUG Processing 306/348 atomic regions from SNP 91663 to 92263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,588 DEBUG Processing 227/518 atomic regions from SNP 67866 to 68466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,675 DEBUG Processing 307/348 atomic regions from SNP 91963 to 92563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,767 DEBUG Processing 228/518 atomic regions from SNP 68166 to 68766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,826 DEBUG Processing 308/348 atomic regions from SNP 92263 to 92863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,944 DEBUG Processing 229/518 atomic regions from SNP 68466 to 69066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,973 DEBUG Processing 309/348 atomic regions from SNP 92563 to 93163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,121 DEBUG Processing 310/348 atomic regions from SNP 92863 to 93463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,122 DEBUG Processing 230/518 atomic regions from SNP 68766 to 69366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,271 DEBUG Processing 311/348 atomic regions from SNP 93163 to 93763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,305 DEBUG Processing 231/518 atomic regions from SNP 69066 to 69666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,430 DEBUG Processing 312/348 atomic regions from SNP 93463 to 94063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,504 DEBUG Processing 232/518 atomic regions from SNP 69366 to 69966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,580 DEBUG Processing 313/348 atomic regions from SNP 93763 to 94363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,690 DEBUG Processing 233/518 atomic regions from SNP 69666 to 70266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,727 DEBUG Processing 314/348 atomic regions from SNP 94063 to 94663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,868 DEBUG Processing 234/518 atomic regions from SNP 69966 to 70566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,880 DEBUG Processing 315/348 atomic regions from SNP 94363 to 94963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,035 DEBUG Processing 316/348 atomic regions from SNP 94663 to 95263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,047 DEBUG Processing 235/518 atomic regions from SNP 70266 to 70866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,179 DEBUG Processing 317/348 atomic regions from SNP 94963 to 95563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,225 DEBUG Processing 236/518 atomic regions from SNP 70566 to 71166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,322 DEBUG Processing 318/348 atomic regions from SNP 95263 to 95863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,405 DEBUG Processing 237/518 atomic regions from SNP 70866 to 71466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,487 DEBUG Processing 319/348 atomic regions from SNP 95563 to 96163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,582 DEBUG Processing 238/518 atomic regions from SNP 71166 to 71766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,647 DEBUG Processing 320/348 atomic regions from SNP 95863 to 96463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,767 DEBUG Processing 239/518 atomic regions from SNP 71466 to 72066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,804 DEBUG Processing 321/348 atomic regions from SNP 96163 to 96763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,946 DEBUG Processing 240/518 atomic regions from SNP 71766 to 72366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,966 DEBUG Processing 322/348 atomic regions from SNP 96463 to 97063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,125 DEBUG Processing 323/348 atomic regions from SNP 96763 to 97363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,126 DEBUG Processing 241/518 atomic regions from SNP 72066 to 72666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,273 DEBUG Processing 324/348 atomic regions from SNP 97063 to 97663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,310 DEBUG Processing 242/518 atomic regions from SNP 72366 to 72966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,423 DEBUG Processing 325/348 atomic regions from SNP 97363 to 97963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,495 DEBUG Processing 243/518 atomic regions from SNP 72666 to 73266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,577 DEBUG Processing 326/348 atomic regions from SNP 97663 to 98263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,682 DEBUG Processing 244/518 atomic regions from SNP 72966 to 73566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,727 DEBUG Processing 327/348 atomic regions from SNP 97963 to 98563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,875 DEBUG Processing 328/348 atomic regions from SNP 98263 to 98863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,880 DEBUG Processing 245/518 atomic regions from SNP 73266 to 73866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,021 DEBUG Processing 329/348 atomic regions from SNP 98563 to 99163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,067 DEBUG Processing 246/518 atomic regions from SNP 73566 to 74166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,169 DEBUG Processing 330/348 atomic regions from SNP 98863 to 99463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,258 DEBUG Processing 247/518 atomic regions from SNP 73866 to 74466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,316 DEBUG Processing 331/348 atomic regions from SNP 99163 to 99763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,447 DEBUG Processing 248/518 atomic regions from SNP 74166 to 74766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,458 DEBUG Processing 332/348 atomic regions from SNP 99463 to 100063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,603 DEBUG Processing 333/348 atomic regions from SNP 99763 to 100363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,636 DEBUG Processing 249/518 atomic regions from SNP 74466 to 75066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,749 DEBUG Processing 334/348 atomic regions from SNP 100063 to 100663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,821 DEBUG Processing 250/518 atomic regions from SNP 74766 to 75366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,891 DEBUG Processing 335/348 atomic regions from SNP 100363 to 100963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,998 DEBUG Processing 251/518 atomic regions from SNP 75066 to 75666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,034 DEBUG Processing 336/348 atomic regions from SNP 100663 to 101263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,182 DEBUG Processing 337/348 atomic regions from SNP 100963 to 101563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,183 DEBUG Processing 252/518 atomic regions from SNP 75366 to 75966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,331 DEBUG Processing 338/348 atomic regions from SNP 101263 to 101863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,361 DEBUG Processing 253/518 atomic regions from SNP 75666 to 76266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,475 DEBUG Processing 339/348 atomic regions from SNP 101563 to 102163 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,534 DEBUG Processing 254/518 atomic regions from SNP 75966 to 76566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,622 DEBUG Processing 340/348 atomic regions from SNP 101863 to 102463 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,710 DEBUG Processing 255/518 atomic regions from SNP 76266 to 76866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,766 DEBUG Processing 341/348 atomic regions from SNP 102163 to 102763 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,887 DEBUG Processing 256/518 atomic regions from SNP 76566 to 77166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,912 DEBUG Processing 342/348 atomic regions from SNP 102463 to 103063 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,061 DEBUG Processing 343/348 atomic regions from SNP 102763 to 103363 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,083 DEBUG Processing 257/518 atomic regions from SNP 76866 to 77466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,213 DEBUG Processing 344/348 atomic regions from SNP 103063 to 103663 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,278 DEBUG Processing 258/518 atomic regions from SNP 77166 to 77766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,358 DEBUG Processing 345/348 atomic regions from SNP 103363 to 103963 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,459 DEBUG Processing 259/518 atomic regions from SNP 77466 to 78066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,510 DEBUG Processing 346/348 atomic regions from SNP 103663 to 104263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,639 DEBUG Processing 260/518 atomic regions from SNP 77766 to 78366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,681 DEBUG Processing 347/348 atomic regions from SNP 103963 to 104563 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,817 DEBUG Processing 261/518 atomic regions from SNP 78066 to 78666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,824 DEBUG Processing 348/348 atomic regions from SNP 104263 to 104863 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,926 DEBUG Unique SNPs positions in subchromosome 1: 104864 2025-01-31 09:59:48,015 DEBUG Processing 262/518 atomic regions from SNP 78366 to 78966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,203 DEBUG Processing 263/518 atomic regions from SNP 78666 to 79266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,383 DEBUG Processing 264/518 atomic regions from SNP 78966 to 79566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,565 DEBUG Processing 265/518 atomic regions from SNP 79266 to 79866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,748 DEBUG Processing 266/518 atomic regions from SNP 79566 to 80166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,935 DEBUG Processing 267/518 atomic regions from SNP 79866 to 80466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,116 DEBUG Processing 268/518 atomic regions from SNP 80166 to 80766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,297 DEBUG Processing 269/518 atomic regions from SNP 80466 to 81066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,479 DEBUG Processing 270/518 atomic regions from SNP 80766 to 81366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,662 DEBUG Processing 271/518 atomic regions from SNP 81066 to 81666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,841 DEBUG Processing 272/518 atomic regions from SNP 81366 to 81966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,017 DEBUG Processing 273/518 atomic regions from SNP 81666 to 82266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,121 DEBUG Subchromosome time: 72.99898079305422, subchromosome SNPs: 104864 2025-01-31 09:59:50,121 DEBUG Estimated BADs: [9.81, 0.82, 7.36, 0.61, 2.45, 0.82, 2.45, 0.82, 2.45, 0.82, 2.45, 0.61, 2.45, 0.31, 4.91, 7.36, 2.45, 0.41, 1.23, 7.36, 2.45] SNP counts: [8259, 854, 4428, 996, 798, 6132, 3614, 9317, 4524, 4519, 10222, 4196, 6308, 1171, 8035, 5188, 3601, 4781, 2814, 1105, 14002] SNP IDs counts: [8259, 854, 4428, 996, 798, 6132, 3614, 9317, 4524, 4519, 10222, 4196, 6308, 1171, 8035, 5188, 3601, 4781, 2814, 1105, 14002] Critical gap: 412720bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 7.62Mbp, 8.22Mbp, 10.98Mbp, 11.58Mbp, 12.02Mbp, 15.57Mbp, 17.51Mbp, 22.75Mbp, 25.16Mbp, 27.65Mbp, 33.14Mbp, 35.65Mbp, 39.04Mbp, 39.92Mbp, 44.25Mbp, 46.98Mbp, 48.90Mbp, 51.67Mbp, 53.24Mbp, 53.83Mbp, 61.43Mbp] 2025-01-31 09:59:50,121 DEBUG chr19 time: 72.99954304599669 s 2025-01-31 09:59:50,177 DEBUG chr19: Fitting background model for 21 segments 2025-01-31 09:59:50,194 DEBUG Processing 274/518 atomic regions from SNP 81966 to 82566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,379 DEBUG Processing 275/518 atomic regions from SNP 82266 to 82866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,560 DEBUG Processing 276/518 atomic regions from SNP 82566 to 83166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,742 DEBUG Processing 277/518 atomic regions from SNP 82866 to 83466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,939 DEBUG Processing 278/518 atomic regions from SNP 83166 to 83766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,124 DEBUG Processing 279/518 atomic regions from SNP 83466 to 84066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,316 DEBUG Processing 280/518 atomic regions from SNP 83766 to 84366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,512 DEBUG Processing 281/518 atomic regions from SNP 84066 to 84666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,706 DEBUG Processing 282/518 atomic regions from SNP 84366 to 84966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,902 DEBUG Processing 283/518 atomic regions from SNP 84666 to 85266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,091 DEBUG Processing 284/518 atomic regions from SNP 84966 to 85566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,289 DEBUG Processing 285/518 atomic regions from SNP 85266 to 85866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,472 DEBUG Processing 286/518 atomic regions from SNP 85566 to 86166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,653 DEBUG Processing 287/518 atomic regions from SNP 85866 to 86466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,833 DEBUG Processing 288/518 atomic regions from SNP 86166 to 86766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,010 DEBUG Processing 289/518 atomic regions from SNP 86466 to 87066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,187 DEBUG Processing 290/518 atomic regions from SNP 86766 to 87366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,362 DEBUG Processing 291/518 atomic regions from SNP 87066 to 87666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,535 DEBUG Processing 292/518 atomic regions from SNP 87366 to 87966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,710 DEBUG Processing 293/518 atomic regions from SNP 87666 to 88266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,889 DEBUG Processing 294/518 atomic regions from SNP 87966 to 88566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,060 DEBUG Processing 295/518 atomic regions from SNP 88266 to 88866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,230 DEBUG Processing 296/518 atomic regions from SNP 88566 to 89166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,401 DEBUG Processing 297/518 atomic regions from SNP 88866 to 89466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,572 DEBUG Processing 298/518 atomic regions from SNP 89166 to 89766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,751 DEBUG Processing 299/518 atomic regions from SNP 89466 to 90066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,920 DEBUG Processing 300/518 atomic regions from SNP 89766 to 90366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,091 DEBUG Processing 301/518 atomic regions from SNP 90066 to 90666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,262 DEBUG Processing 302/518 atomic regions from SNP 90366 to 90966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,438 DEBUG Processing 303/518 atomic regions from SNP 90666 to 91266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,608 DEBUG Processing 304/518 atomic regions from SNP 90966 to 91566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,779 DEBUG Processing 305/518 atomic regions from SNP 91266 to 91866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,957 DEBUG Processing 306/518 atomic regions from SNP 91566 to 92166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,128 DEBUG Processing 307/518 atomic regions from SNP 91866 to 92466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,303 DEBUG Processing 308/518 atomic regions from SNP 92166 to 92766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,478 DEBUG Processing 309/518 atomic regions from SNP 92466 to 93066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,653 DEBUG Processing 310/518 atomic regions from SNP 92766 to 93366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,831 DEBUG Processing 311/518 atomic regions from SNP 93066 to 93666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,010 DEBUG Processing 312/518 atomic regions from SNP 93366 to 93966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,185 DEBUG Processing 313/518 atomic regions from SNP 93666 to 94266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,364 DEBUG Processing 314/518 atomic regions from SNP 93966 to 94566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,542 DEBUG Processing 315/518 atomic regions from SNP 94266 to 94866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,725 DEBUG Processing 316/518 atomic regions from SNP 94566 to 95166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,926 DEBUG Processing 317/518 atomic regions from SNP 94866 to 95466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,120 DEBUG Processing 318/518 atomic regions from SNP 95166 to 95766 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,301 DEBUG Processing 319/518 atomic regions from SNP 95466 to 96066 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,478 DEBUG Processing 320/518 atomic regions from SNP 95766 to 96366 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,654 DEBUG Processing 321/518 atomic regions from SNP 96066 to 96666 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,834 DEBUG Processing 322/518 atomic regions from SNP 96366 to 96966 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,011 DEBUG Processing 323/518 atomic regions from SNP 96666 to 97266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,185 DEBUG Processing 324/518 atomic regions from SNP 96966 to 97566 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,360 DEBUG Processing 325/518 atomic regions from SNP 97266 to 97866 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,535 DEBUG Processing 326/518 atomic regions from SNP 97566 to 98166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,707 DEBUG Processing 327/518 atomic regions from SNP 97866 to 98466 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,880 DEBUG Processing 328/518 atomic regions from SNP 98166 to 98766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,054 DEBUG Processing 329/518 atomic regions from SNP 98466 to 99066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,225 DEBUG Processing 330/518 atomic regions from SNP 98766 to 99366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,395 DEBUG Processing 331/518 atomic regions from SNP 99066 to 99666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,564 DEBUG Processing 332/518 atomic regions from SNP 99366 to 99966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,731 DEBUG Processing 333/518 atomic regions from SNP 99666 to 100266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,902 DEBUG Processing 334/518 atomic regions from SNP 99966 to 100566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,070 DEBUG Processing 335/518 atomic regions from SNP 100266 to 100866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,240 DEBUG Processing 336/518 atomic regions from SNP 100566 to 101166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,430 DEBUG Processing 337/518 atomic regions from SNP 100866 to 101466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,604 DEBUG Processing 338/518 atomic regions from SNP 101166 to 101766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,787 DEBUG Processing 339/518 atomic regions from SNP 101466 to 102066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,974 DEBUG Processing 340/518 atomic regions from SNP 101766 to 102366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,166 DEBUG Processing 341/518 atomic regions from SNP 102066 to 102666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,356 DEBUG Processing 342/518 atomic regions from SNP 102366 to 102966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,541 DEBUG Processing 343/518 atomic regions from SNP 102666 to 103266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,720 DEBUG Processing 344/518 atomic regions from SNP 102966 to 103566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,904 DEBUG Processing 345/518 atomic regions from SNP 103266 to 103866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,097 DEBUG Processing 346/518 atomic regions from SNP 103566 to 104166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,294 DEBUG Processing 347/518 atomic regions from SNP 103866 to 104466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,481 DEBUG Processing 348/518 atomic regions from SNP 104166 to 104766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,655 DEBUG Processing 349/518 atomic regions from SNP 104466 to 105066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,821 DEBUG Processing 350/518 atomic regions from SNP 104766 to 105366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,983 DEBUG Processing 351/518 atomic regions from SNP 105066 to 105666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,147 DEBUG Processing 352/518 atomic regions from SNP 105366 to 105966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,310 DEBUG Processing 353/518 atomic regions from SNP 105666 to 106266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,484 DEBUG Processing 354/518 atomic regions from SNP 105966 to 106566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,648 DEBUG Processing 355/518 atomic regions from SNP 106266 to 106866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,836 DEBUG Processing 356/518 atomic regions from SNP 106566 to 107166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,998 DEBUG Processing 357/518 atomic regions from SNP 106866 to 107466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,157 DEBUG Processing 358/518 atomic regions from SNP 107166 to 107766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,318 DEBUG Processing 359/518 atomic regions from SNP 107466 to 108066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,503 DEBUG Processing 360/518 atomic regions from SNP 107766 to 108366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,666 DEBUG Processing 361/518 atomic regions from SNP 108066 to 108666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,826 DEBUG Processing 362/518 atomic regions from SNP 108366 to 108966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,984 DEBUG Processing 363/518 atomic regions from SNP 108666 to 109266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,165 DEBUG Processing 364/518 atomic regions from SNP 108966 to 109566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,352 DEBUG Processing 365/518 atomic regions from SNP 109266 to 109866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,515 DEBUG Processing 366/518 atomic regions from SNP 109566 to 110166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,682 DEBUG Processing 367/518 atomic regions from SNP 109866 to 110466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,845 DEBUG Processing 368/518 atomic regions from SNP 110166 to 110766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,010 DEBUG Processing 369/518 atomic regions from SNP 110466 to 111066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,187 DEBUG Processing 370/518 atomic regions from SNP 110766 to 111366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,369 DEBUG Processing 371/518 atomic regions from SNP 111066 to 111666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,530 DEBUG Processing 372/518 atomic regions from SNP 111366 to 111966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,691 DEBUG Processing 373/518 atomic regions from SNP 111666 to 112266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,851 DEBUG Processing 374/518 atomic regions from SNP 111966 to 112566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,015 DEBUG Processing 375/518 atomic regions from SNP 112266 to 112866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,179 DEBUG Processing 376/518 atomic regions from SNP 112566 to 113166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,353 DEBUG Processing 377/518 atomic regions from SNP 112866 to 113466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,525 DEBUG Processing 378/518 atomic regions from SNP 113166 to 113766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,696 DEBUG Processing 379/518 atomic regions from SNP 113466 to 114066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,861 DEBUG Processing 380/518 atomic regions from SNP 113766 to 114366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,037 DEBUG Processing 381/518 atomic regions from SNP 114066 to 114666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,230 DEBUG Processing 382/518 atomic regions from SNP 114366 to 114966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,426 DEBUG Processing 383/518 atomic regions from SNP 114666 to 115266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,619 DEBUG Processing 384/518 atomic regions from SNP 114966 to 115566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,820 DEBUG Processing 385/518 atomic regions from SNP 115266 to 115866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,008 DEBUG Processing 386/518 atomic regions from SNP 115566 to 116166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,174 DEBUG Processing 387/518 atomic regions from SNP 115866 to 116466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,351 DEBUG Processing 388/518 atomic regions from SNP 116166 to 116766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,515 DEBUG Processing 389/518 atomic regions from SNP 116466 to 117066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,677 DEBUG Processing 390/518 atomic regions from SNP 116766 to 117366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,839 DEBUG Processing 391/518 atomic regions from SNP 117066 to 117666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,997 DEBUG Processing 392/518 atomic regions from SNP 117366 to 117966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,157 DEBUG Processing 393/518 atomic regions from SNP 117666 to 118266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,317 DEBUG Processing 394/518 atomic regions from SNP 117966 to 118566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,479 DEBUG Processing 395/518 atomic regions from SNP 118266 to 118866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,642 DEBUG Processing 396/518 atomic regions from SNP 118566 to 119166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,802 DEBUG Processing 397/518 atomic regions from SNP 118866 to 119466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,961 DEBUG Processing 398/518 atomic regions from SNP 119166 to 119766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,119 DEBUG Processing 399/518 atomic regions from SNP 119466 to 120066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,281 DEBUG Processing 400/518 atomic regions from SNP 119766 to 120366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,446 DEBUG Processing 401/518 atomic regions from SNP 120066 to 120666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,631 DEBUG Processing 402/518 atomic regions from SNP 120366 to 120966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,807 DEBUG Processing 403/518 atomic regions from SNP 120666 to 121266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,968 DEBUG Processing 404/518 atomic regions from SNP 120966 to 121566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,141 DEBUG Processing 405/518 atomic regions from SNP 121266 to 121866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,304 DEBUG Processing 406/518 atomic regions from SNP 121566 to 122166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,465 DEBUG Processing 407/518 atomic regions from SNP 121866 to 122466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,625 DEBUG Processing 408/518 atomic regions from SNP 122166 to 122766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,787 DEBUG Processing 409/518 atomic regions from SNP 122466 to 123066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,951 DEBUG Processing 410/518 atomic regions from SNP 122766 to 123366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,115 DEBUG Processing 411/518 atomic regions from SNP 123066 to 123666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,278 DEBUG Processing 412/518 atomic regions from SNP 123366 to 123966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,440 DEBUG Processing 413/518 atomic regions from SNP 123666 to 124266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,602 DEBUG Processing 414/518 atomic regions from SNP 123966 to 124566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,762 DEBUG Processing 415/518 atomic regions from SNP 124266 to 124866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,923 DEBUG Processing 416/518 atomic regions from SNP 124566 to 125166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,083 DEBUG Processing 417/518 atomic regions from SNP 124866 to 125466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,243 DEBUG Processing 418/518 atomic regions from SNP 125166 to 125766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,405 DEBUG Processing 419/518 atomic regions from SNP 125466 to 126066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,585 DEBUG Processing 420/518 atomic regions from SNP 125766 to 126366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,762 DEBUG Processing 421/518 atomic regions from SNP 126066 to 126666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,927 DEBUG Processing 422/518 atomic regions from SNP 126366 to 126966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,096 DEBUG Processing 423/518 atomic regions from SNP 126666 to 127266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,278 DEBUG Processing 424/518 atomic regions from SNP 126966 to 127566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,437 DEBUG Processing 425/518 atomic regions from SNP 127266 to 127866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,596 DEBUG Processing 426/518 atomic regions from SNP 127566 to 128166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,777 DEBUG Processing 427/518 atomic regions from SNP 127866 to 128466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,954 DEBUG Processing 428/518 atomic regions from SNP 128166 to 128766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,135 DEBUG Processing 429/518 atomic regions from SNP 128466 to 129066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,306 DEBUG Processing 430/518 atomic regions from SNP 128766 to 129366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,486 DEBUG Processing 431/518 atomic regions from SNP 129066 to 129666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,671 DEBUG Processing 432/518 atomic regions from SNP 129366 to 129966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,837 DEBUG Processing 433/518 atomic regions from SNP 129666 to 130266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,997 DEBUG Processing 434/518 atomic regions from SNP 129966 to 130566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,160 DEBUG Processing 435/518 atomic regions from SNP 130266 to 130866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,333 DEBUG Processing 436/518 atomic regions from SNP 130566 to 131166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,512 DEBUG Processing 437/518 atomic regions from SNP 130866 to 131466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,674 DEBUG Processing 438/518 atomic regions from SNP 131166 to 131766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,834 DEBUG Processing 439/518 atomic regions from SNP 131466 to 132066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,995 DEBUG Processing 440/518 atomic regions from SNP 131766 to 132366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,177 DEBUG Processing 441/518 atomic regions from SNP 132066 to 132666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,345 DEBUG Processing 442/518 atomic regions from SNP 132366 to 132966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,504 DEBUG Processing 443/518 atomic regions from SNP 132666 to 133266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,670 DEBUG Processing 444/518 atomic regions from SNP 132966 to 133566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,847 DEBUG Processing 445/518 atomic regions from SNP 133266 to 133866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,035 DEBUG Processing 446/518 atomic regions from SNP 133566 to 134166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,209 DEBUG Processing 447/518 atomic regions from SNP 133866 to 134466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,387 DEBUG Processing 448/518 atomic regions from SNP 134166 to 134766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,552 DEBUG Processing 449/518 atomic regions from SNP 134466 to 135066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,712 DEBUG Processing 450/518 atomic regions from SNP 134766 to 135366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,871 DEBUG Processing 451/518 atomic regions from SNP 135066 to 135666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,030 DEBUG Processing 452/518 atomic regions from SNP 135366 to 135966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,191 DEBUG Processing 453/518 atomic regions from SNP 135666 to 136266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,348 DEBUG Processing 454/518 atomic regions from SNP 135966 to 136566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,507 DEBUG Processing 455/518 atomic regions from SNP 136266 to 136866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,666 DEBUG Processing 456/518 atomic regions from SNP 136566 to 137166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,823 DEBUG Processing 457/518 atomic regions from SNP 136866 to 137466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,981 DEBUG Processing 458/518 atomic regions from SNP 137166 to 137766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,162 DEBUG Processing 459/518 atomic regions from SNP 137466 to 138066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,355 DEBUG Processing 460/518 atomic regions from SNP 137766 to 138366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,536 DEBUG Processing 461/518 atomic regions from SNP 138066 to 138666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,711 DEBUG Processing 462/518 atomic regions from SNP 138366 to 138966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,888 DEBUG Processing 463/518 atomic regions from SNP 138666 to 139266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,048 DEBUG Processing 464/518 atomic regions from SNP 138966 to 139566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,207 DEBUG Processing 465/518 atomic regions from SNP 139266 to 139866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,365 DEBUG Processing 466/518 atomic regions from SNP 139566 to 140166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,524 DEBUG Processing 467/518 atomic regions from SNP 139866 to 140466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,682 DEBUG Processing 468/518 atomic regions from SNP 140166 to 140766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,839 DEBUG Processing 469/518 atomic regions from SNP 140466 to 141066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,997 DEBUG Processing 470/518 atomic regions from SNP 140766 to 141366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,158 DEBUG Processing 471/518 atomic regions from SNP 141066 to 141666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,315 DEBUG Processing 472/518 atomic regions from SNP 141366 to 141966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,475 DEBUG Processing 473/518 atomic regions from SNP 141666 to 142266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,637 DEBUG Processing 474/518 atomic regions from SNP 141966 to 142566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,815 DEBUG Processing 475/518 atomic regions from SNP 142266 to 142866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,986 DEBUG Processing 476/518 atomic regions from SNP 142566 to 143166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,149 DEBUG Processing 477/518 atomic regions from SNP 142866 to 143466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,308 DEBUG Processing 478/518 atomic regions from SNP 143166 to 143766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,469 DEBUG Processing 479/518 atomic regions from SNP 143466 to 144066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,627 DEBUG Processing 480/518 atomic regions from SNP 143766 to 144366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,784 DEBUG Processing 481/518 atomic regions from SNP 144066 to 144666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,941 DEBUG Processing 482/518 atomic regions from SNP 144366 to 144966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,098 DEBUG Processing 483/518 atomic regions from SNP 144666 to 145266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,255 DEBUG Processing 484/518 atomic regions from SNP 144966 to 145566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,412 DEBUG Processing 485/518 atomic regions from SNP 145266 to 145866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,569 DEBUG Processing 486/518 atomic regions from SNP 145566 to 146166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,739 DEBUG Processing 487/518 atomic regions from SNP 145866 to 146466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,908 DEBUG Processing 488/518 atomic regions from SNP 146166 to 146766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,094 DEBUG Processing 489/518 atomic regions from SNP 146466 to 147066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,273 DEBUG Processing 490/518 atomic regions from SNP 146766 to 147366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,431 DEBUG Processing 491/518 atomic regions from SNP 147066 to 147666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,595 DEBUG Processing 492/518 atomic regions from SNP 147366 to 147966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,753 DEBUG Processing 493/518 atomic regions from SNP 147666 to 148266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,913 DEBUG Processing 494/518 atomic regions from SNP 147966 to 148566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,071 DEBUG Processing 495/518 atomic regions from SNP 148266 to 148866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,228 DEBUG Processing 496/518 atomic regions from SNP 148566 to 149166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,405 DEBUG Processing 497/518 atomic regions from SNP 148866 to 149466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,567 DEBUG Processing 498/518 atomic regions from SNP 149166 to 149766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,728 DEBUG Processing 499/518 atomic regions from SNP 149466 to 150066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,887 DEBUG Processing 500/518 atomic regions from SNP 149766 to 150366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,050 DEBUG Processing 501/518 atomic regions from SNP 150066 to 150666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,209 DEBUG Processing 502/518 atomic regions from SNP 150366 to 150966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,369 DEBUG Processing 503/518 atomic regions from SNP 150666 to 151266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,530 DEBUG Processing 504/518 atomic regions from SNP 150966 to 151566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,694 DEBUG Processing 505/518 atomic regions from SNP 151266 to 151866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,858 DEBUG Processing 506/518 atomic regions from SNP 151566 to 152166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,046 DEBUG Processing 507/518 atomic regions from SNP 151866 to 152466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,219 DEBUG Processing 508/518 atomic regions from SNP 152166 to 152766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,393 DEBUG Processing 509/518 atomic regions from SNP 152466 to 153066 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,562 DEBUG Processing 510/518 atomic regions from SNP 152766 to 153366 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,726 DEBUG Processing 511/518 atomic regions from SNP 153066 to 153666 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,890 DEBUG Processing 512/518 atomic regions from SNP 153366 to 153966 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,050 DEBUG Processing 513/518 atomic regions from SNP 153666 to 154266 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,209 DEBUG Processing 514/518 atomic regions from SNP 153966 to 154566 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,376 DEBUG Processing 515/518 atomic regions from SNP 154266 to 154866 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,535 DEBUG Processing 516/518 atomic regions from SNP 154566 to 155166 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,697 DEBUG Processing 517/518 atomic regions from SNP 154866 to 155466 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,861 DEBUG Processing 518/518 atomic regions from SNP 155166 to 155766 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,962 DEBUG Unique SNPs positions in subchromosome 1: 155767 2025-01-31 10:00:34,212 DEBUG Subchromosome time: 117.30591535498388, subchromosome SNPs: 155767 2025-01-31 10:00:34,212 DEBUG Estimated BADs: [1.91, 0.48, 1.91, 0.48, 3.83, 7.65, 1.91, 7.65, 1.91, 0.96, 1.91, 7.65, 1.91, 9.57, 1.91, 0.64, 3.83, 1.91, 7.65, 1.91, 0.96] SNP counts: [24449, 4206, 12013, 9301, 4854, 4777, 1678, 987, 21906, 10501, 6953, 2342, 10260, 835, 6580, 4053, 8278, 3561, 639, 9573, 8021] SNP IDs counts: [24449, 4206, 12013, 9301, 4854, 4777, 1678, 987, 21906, 10501, 6953, 2342, 10260, 835, 6580, 4053, 8278, 3561, 639, 9573, 8021] Critical gap: 509590bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 16.94Mbp, 19.52Mbp, 26.27Mbp, 31.61Mbp, 34.31Mbp, 36.81Mbp, 37.81Mbp, 38.33Mbp, 50.64Mbp, 56.58Mbp, 60.46Mbp, 61.67Mbp, 67.20Mbp, 67.63Mbp, 71.28Mbp, 73.57Mbp, 78.08Mbp, 80.08Mbp, 80.41Mbp, 85.66Mbp, 90.70Mbp] 2025-01-31 10:00:34,212 DEBUG chr18 time: 117.3063512230292 s 2025-01-31 10:00:34,290 DEBUG chr18: Fitting background model for 21 segments 2025-01-31 10:00:58,944 DEBUG Results of fit_background_model emitted. 2025-01-31 10:00:59,089 INFO Signal to noise fit: SPOT=0.38±0.18 2025-01-31 10:00:59,097 INFO Final SPOT score: 0.38±0.18. Refitted 0 segments. 2025-01-31 10:00:59,148 INFO Estimating per-bp parameters of background model 2025-01-31 10:00:59,156 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:00:59,156 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:01:04,842 DEBUG chr5:3002500-5884501: Successfully fit background model for 2,528,540 bp. Use segment r for 0 bp 2025-01-31 10:01:05,374 DEBUG chr4:3050000-8643001: Successfully fit background model for 4,721,907 bp. Use segment r for 0 bp 2025-01-31 10:01:05,465 DEBUG chr3:3000000-8662751: Successfully fit background model for 4,886,231 bp. Use segment r for 0 bp 2025-01-31 10:01:05,621 DEBUG chr3:8662751-10228251: Successfully fit background model for 1,441,438 bp. Use segment r for 0 bp 2025-01-31 10:01:05,928 DEBUG chr2:3051000-7363751: Successfully fit background model for 4,076,380 bp. Use segment r for 0 bp 2025-01-31 10:01:06,100 DEBUG chr2:7363751-9187751: Successfully fit background model for 1,607,108 bp. Use segment r for 0 bp 2025-01-31 10:01:06,107 DEBUG chr4:8643001-16172251: Successfully fit background model for 6,796,635 bp. Use segment r for 0 bp 2025-01-31 10:01:06,337 DEBUG chrX:3055000-7553751: Successfully fit background model for 2,005,442 bp. Use segment r for 1,797 bp 2025-01-31 10:01:06,384 DEBUG chrX:7553751-7911751: Successfully fit background model for 349,885 bp. Use segment r for 0 bp 2025-01-31 10:01:06,591 DEBUG chr3:10228251-19147251: Successfully fit background model for 7,506,979 bp. Use segment r for 0 bp 2025-01-31 10:01:06,635 DEBUG chr2:9187751-14607251: Successfully fit background model for 4,968,164 bp. Use segment r for 0 bp 2025-01-31 10:01:06,690 DEBUG chr3:19147251-20032751: Successfully fit background model for 813,235 bp. Use segment r for 0 bp 2025-01-31 10:01:06,769 DEBUG chr1:3000500-9515251: Successfully fit background model for 5,675,250 bp. Use segment r for 0 bp 2025-01-31 10:01:06,829 DEBUG chr1:9515251-9988751: Successfully fit background model for 453,572 bp. Use segment r for 0 bp 2025-01-31 10:01:06,943 DEBUG chr2:14607251-18021751: Successfully fit background model for 3,047,311 bp. Use segment r for 0 bp 2025-01-31 10:01:07,013 DEBUG chrX:7911751-13700001: Successfully fit background model for 5,087,360 bp. Use segment r for 0 bp 2025-01-31 10:01:07,112 DEBUG chr2:18021751-19806751: Successfully fit background model for 1,661,176 bp. Use segment r for 0 bp 2025-01-31 10:01:07,242 DEBUG chrX:13700001-16052751: Successfully fit background model for 2,041,075 bp. Use segment r for 0 bp 2025-01-31 10:01:07,269 DEBUG chr5:5884501-20877251: Successfully fit background model for 11,952,649 bp. Use segment r for 1,721 bp 2025-01-31 10:01:07,305 DEBUG chr5:20877251-20961251: Successfully fit background model for 82,802 bp. Use segment r for 0 bp 2025-01-31 10:01:07,435 DEBUG chr3:20032751-27057751: Successfully fit background model for 6,122,283 bp. Use segment r for 0 bp 2025-01-31 10:01:07,481 DEBUG chr1:9988751-16618251: Successfully fit background model for 5,973,956 bp. Use segment r for 0 bp 2025-01-31 10:01:07,503 DEBUG chr1:16618251-16691751: Successfully fit background model for 66,799 bp. Use segment r for 0 bp 2025-01-31 10:01:07,556 DEBUG chr5:20961251-23400751: Successfully fit background model for 2,220,295 bp. Use segment r for 0 bp 2025-01-31 10:01:07,595 DEBUG chr2:19806751-24917751: Successfully fit background model for 4,484,928 bp. Use segment r for 0 bp 2025-01-31 10:01:07,750 DEBUG chr5:23400751-25494751: Successfully fit background model for 1,993,409 bp. Use segment r for 0 bp 2025-01-31 10:01:07,813 DEBUG chr4:16172251-32763751: Successfully fit background model for 14,725,891 bp. Use segment r for 0 bp 2025-01-31 10:01:07,893 DEBUG chr4:32763751-33312251: Successfully fit background model for 526,854 bp. Use segment r for 0 bp 2025-01-31 10:01:07,948 DEBUG chrX:16052751-22251251: Successfully fit background model for 5,314,238 bp. Use segment r for 0 bp 2025-01-31 10:01:08,201 DEBUG chr5:25494751-30185251: Successfully fit background model for 4,198,758 bp. Use segment r for 0 bp 2025-01-31 10:01:08,255 DEBUG chr4:33312251-37026251: Successfully fit background model for 3,396,572 bp. Use segment r for 0 bp 2025-01-31 10:01:08,308 DEBUG chr5:30185251-31244251: Successfully fit background model for 976,628 bp. Use segment r for 0 bp 2025-01-31 10:01:08,530 DEBUG chr4:37026251-40134251: Successfully fit background model for 2,728,797 bp. Use segment r for 0 bp 2025-01-31 10:01:08,595 DEBUG chr3:27057751-38138251: Successfully fit background model for 10,263,703 bp. Use segment r for 0 bp 2025-01-31 10:01:08,622 DEBUG chrX:22251251-26910501: Successfully fit background model for 2,179,610 bp. Use segment r for 1,640 bp 2025-01-31 10:01:08,686 DEBUG chr4:40134251-41857501: Successfully fit background model for 1,562,855 bp. Use segment r for 0 bp 2025-01-31 10:01:08,750 DEBUG chr2:24917751-36245251: Successfully fit background model for 11,006,756 bp. Use segment r for 0 bp 2025-01-31 10:01:08,843 DEBUG chr2:36245251-36991751: Successfully fit background model for 615,663 bp. Use segment r for 0 bp 2025-01-31 10:01:08,861 DEBUG chr3:38138251-40946251: Successfully fit background model for 2,495,192 bp. Use segment r for 0 bp 2025-01-31 10:01:08,939 DEBUG chr3:40946251-41692251: Successfully fit background model for 721,153 bp. Use segment r for 0 bp 2025-01-31 10:01:09,007 DEBUG chr1:16691751-30794751: Successfully fit background model for 12,591,844 bp. Use segment r for 0 bp 2025-01-31 10:01:09,047 DEBUG chr1:30794751-30978751: Successfully fit background model for 163,980 bp. Use segment r for 0 bp 2025-01-31 10:01:09,069 DEBUG chr2:36991751-39305751: Successfully fit background model for 2,171,712 bp. Use segment r for 0 bp 2025-01-31 10:01:09,089 DEBUG chr5:31244251-38975751: Successfully fit background model for 7,362,614 bp. Use segment r for 0 bp 2025-01-31 10:01:09,159 DEBUG chr4:42706000-47523751: Successfully fit background model for 4,560,454 bp. Use segment r for 0 bp 2025-01-31 10:01:09,295 DEBUG chr5:38975751-41128251: Successfully fit background model for 1,954,565 bp. Use segment r for 0 bp 2025-01-31 10:01:09,300 DEBUG chr1:30978751-33458751: Successfully fit background model for 2,170,953 bp. Use segment r for 0 bp 2025-01-31 10:01:09,364 DEBUG chr4:47523751-49692251: Successfully fit background model for 2,000,124 bp. Use segment r for 0 bp 2025-01-31 10:01:09,432 DEBUG chrX:31132500-39281751: Successfully fit background model for 3,124,759 bp. Use segment r for 0 bp 2025-01-31 10:01:09,561 DEBUG chr4:49692251-51875501: Successfully fit background model for 1,928,520 bp. Use segment r for 0 bp 2025-01-31 10:01:09,561 DEBUG chr2:39305751-44308251: Successfully fit background model for 4,559,359 bp. Use segment r for 0 bp 2025-01-31 10:01:09,691 DEBUG chr2:44308251-45597251: Successfully fit background model for 1,235,450 bp. Use segment r for 0 bp 2025-01-31 10:01:09,774 DEBUG chr5:41128251-45880251: Successfully fit background model for 4,262,893 bp. Use segment r for 0 bp 2025-01-31 10:01:09,870 DEBUG chr3:41692251-50895751: Successfully fit background model for 8,112,989 bp. Use segment r for 0 bp 2025-01-31 10:01:09,893 DEBUG chr1:33458751-39399251: Successfully fit background model for 5,667,960 bp. Use segment r for 0 bp 2025-01-31 10:01:09,901 DEBUG chr2:45597251-47944751: Successfully fit background model for 2,115,606 bp. Use segment r for 0 bp 2025-01-31 10:01:09,964 DEBUG chr3:50895751-51697751: Successfully fit background model for 767,796 bp. Use segment r for 0 bp 2025-01-31 10:01:09,971 DEBUG chr4:51875501-56115251: Successfully fit background model for 3,905,464 bp. Use segment r for 0 bp 2025-01-31 10:01:10,273 DEBUG chr5:45880251-51178251: Successfully fit background model for 4,843,186 bp. Use segment r for 0 bp 2025-01-31 10:01:10,328 DEBUG chrX:39281751-47959751: Successfully fit background model for 7,509,456 bp. Use segment r for 0 bp 2025-01-31 10:01:10,330 DEBUG chr1:39399251-44248251: Successfully fit background model for 4,641,113 bp. Use segment r for 0 bp 2025-01-31 10:01:10,420 DEBUG chr2:47944751-53217751: Successfully fit background model for 4,998,374 bp. Use segment r for 0 bp 2025-01-31 10:01:10,559 DEBUG chr5:51178251-54231751: Successfully fit background model for 2,939,169 bp. Use segment r for 0 bp 2025-01-31 10:01:10,744 DEBUG chr4:56115251-63908251: Successfully fit background model for 5,747,010 bp. Use segment r for 0 bp 2025-01-31 10:01:10,780 DEBUG chr2:53217751-57108751: Successfully fit background model for 3,332,004 bp. Use segment r for 0 bp 2025-01-31 10:01:10,832 DEBUG chr2:57108751-57518751: Successfully fit background model for 381,866 bp. Use segment r for 0 bp 2025-01-31 10:01:11,126 DEBUG chr1:44248251-52098751: Successfully fit background model for 6,821,811 bp. Use segment r for 0 bp 2025-01-31 10:01:11,157 DEBUG chr1:52098751-52216751: Successfully fit background model for 116,384 bp. Use segment r for 0 bp 2025-01-31 10:01:11,165 DEBUG chrX:47959751-56340501: Successfully fit background model for 6,190,194 bp. Use segment r for 0 bp 2025-01-31 10:01:11,245 DEBUG chr4:63908251-69501751: Successfully fit background model for 5,046,437 bp. Use segment r for 0 bp 2025-01-31 10:01:11,351 DEBUG chr2:57518751-62683251: Successfully fit background model for 4,823,820 bp. Use segment r for 0 bp 2025-01-31 10:01:11,530 DEBUG chr5:54231751-63432751: Successfully fit background model for 8,150,269 bp. Use segment r for 0 bp 2025-01-31 10:01:11,835 DEBUG chr2:62683251-67872251: Successfully fit background model for 4,794,261 bp. Use segment r for 0 bp 2025-01-31 10:01:11,944 DEBUG chr4:69501751-76630251: Successfully fit background model for 6,158,498 bp. Use segment r for 0 bp 2025-01-31 10:01:12,016 DEBUG chr5:63432751-68517251: Successfully fit background model for 4,791,350 bp. Use segment r for 0 bp 2025-01-31 10:01:12,270 DEBUG chr3:51697751-71159751: Successfully fit background model for 17,613,681 bp. Use segment r for 0 bp 2025-01-31 10:01:12,340 DEBUG chr4:76630251-80884751: Successfully fit background model for 3,836,634 bp. Use segment r for 0 bp 2025-01-31 10:01:12,358 DEBUG chr1:52216751-62695751: Successfully fit background model for 9,719,888 bp. Use segment r for 0 bp 2025-01-31 10:01:12,361 DEBUG chr5:68517251-71853251: Successfully fit background model for 2,952,175 bp. Use segment r for 0 bp 2025-01-31 10:01:12,605 DEBUG chr1:62695751-65130251: Successfully fit background model for 2,286,076 bp. Use segment r for 0 bp 2025-01-31 10:01:12,694 DEBUG chr3:71159751-75060251: Successfully fit background model for 3,457,072 bp. Use segment r for 0 bp 2025-01-31 10:01:12,864 DEBUG chr4:80884751-86651251: Successfully fit background model for 5,324,433 bp. Use segment r for 0 bp 2025-01-31 10:01:12,967 DEBUG chr5:71853251-77902001: Successfully fit background model for 5,726,248 bp. Use segment r for 0 bp 2025-01-31 10:01:13,111 DEBUG chr3:75060251-79507751: Successfully fit background model for 3,990,083 bp. Use segment r for 0 bp 2025-01-31 10:01:13,115 DEBUG chrX:56340501-72907251: Successfully fit background model for 14,315,153 bp. Use segment r for 0 bp 2025-01-31 10:01:13,138 DEBUG chr4:86651251-89576751: Successfully fit background model for 2,612,661 bp. Use segment r for 0 bp 2025-01-31 10:01:13,204 DEBUG chr3:79507751-80337251: Successfully fit background model for 762,594 bp. Use segment r for 0 bp 2025-01-31 10:01:13,228 DEBUG chr2:67872251-80802751: Successfully fit background model for 12,360,668 bp. Use segment r for 0 bp 2025-01-31 10:01:13,285 DEBUG chrX:72907251-74295751: Successfully fit background model for 1,155,668 bp. Use segment r for 0 bp 2025-01-31 10:01:13,307 DEBUG chr1:65130251-72196251: Successfully fit background model for 6,518,793 bp. Use segment r for 0 bp 2025-01-31 10:01:13,403 DEBUG chr2:80802751-82420251: Successfully fit background model for 1,406,642 bp. Use segment r for 0 bp 2025-01-31 10:01:13,476 DEBUG chr4:89576751-92957251: Successfully fit background model for 2,958,967 bp. Use segment r for 0 bp 2025-01-31 10:01:13,516 DEBUG chr1:72196251-74252751: Successfully fit background model for 1,951,324 bp. Use segment r for 0 bp 2025-01-31 10:01:13,552 DEBUG chr5:77902001-83593751: Successfully fit background model for 5,082,356 bp. Use segment r for 0 bp 2025-01-31 10:01:13,596 DEBUG chr3:80337251-84009251: Successfully fit background model for 3,383,099 bp. Use segment r for 0 bp 2025-01-31 10:01:13,622 DEBUG chrX:74295751-77424751: Successfully fit background model for 2,413,101 bp. Use segment r for 0 bp 2025-01-31 10:01:13,631 DEBUG chr2:82420251-84649751: Successfully fit background model for 1,846,745 bp. Use segment r for 0 bp 2025-01-31 10:01:13,648 DEBUG chr1:74252751-75561751: Successfully fit background model for 1,211,786 bp. Use segment r for 0 bp 2025-01-31 10:01:13,701 DEBUG chr2:84649751-85315251: Successfully fit background model for 628,074 bp. Use segment r for 0 bp 2025-01-31 10:01:13,703 DEBUG chr4:92957251-95390251: Successfully fit background model for 2,193,080 bp. Use segment r for 0 bp 2025-01-31 10:01:13,915 DEBUG chr4:95390251-97572251: Successfully fit background model for 1,984,463 bp. Use segment r for 0 bp 2025-01-31 10:01:13,949 DEBUG chr3:84009251-87712751: Successfully fit background model for 3,525,996 bp. Use segment r for 0 bp 2025-01-31 10:01:13,968 DEBUG chr5:83593751-88058751: Successfully fit background model for 3,983,248 bp. Use segment r for 0 bp 2025-01-31 10:01:14,092 DEBUG chr2:85315251-89522251: Successfully fit background model for 3,674,909 bp. Use segment r for 0 bp 2025-01-31 10:01:14,224 DEBUG chr2:89522251-90846251: Successfully fit background model for 1,000,574 bp. Use segment r for 0 bp 2025-01-31 10:01:14,239 DEBUG chr1:75561751-81428251: Successfully fit background model for 5,422,807 bp. Use segment r for 0 bp 2025-01-31 10:01:14,255 DEBUG chr3:87712751-90508751: Successfully fit background model for 2,658,635 bp. Use segment r for 0 bp 2025-01-31 10:01:14,565 DEBUG chr1:81428251-84837751: Successfully fit background model for 3,122,334 bp. Use segment r for 0 bp 2025-01-31 10:01:14,572 DEBUG chr2:90846251-94560751: Successfully fit background model for 3,629,902 bp. Use segment r for 0 bp 2025-01-31 10:01:14,651 DEBUG chr3:90508751-94332751: Successfully fit background model for 2,915,950 bp. Use segment r for 0 bp 2025-01-31 10:01:14,931 DEBUG chr3:94332751-96726751: Successfully fit background model for 2,192,429 bp. Use segment r for 0 bp 2025-01-31 10:01:14,955 DEBUG chr4:97572251-106558251: Successfully fit background model for 8,447,645 bp. Use segment r for 0 bp 2025-01-31 10:01:15,278 DEBUG chr2:94560751-101190251: Successfully fit background model for 5,527,342 bp. Use segment r for 0 bp 2025-01-31 10:01:15,301 DEBUG chr3:96726751-100358751: Successfully fit background model for 3,208,553 bp. Use segment r for 0 bp 2025-01-31 10:01:15,322 DEBUG chr4:106558251-110249251: Successfully fit background model for 3,510,556 bp. Use segment r for 0 bp 2025-01-31 10:01:15,573 DEBUG chrX:77424751-93751751: Successfully fit background model for 13,905,565 bp. Use segment r for 0 bp 2025-01-31 10:01:15,650 DEBUG chr5:88058751-97559251: Successfully fit background model for 6,704,687 bp. Use segment r for 348 bp 2025-01-31 10:01:15,658 DEBUG chr1:84837751-93845251: Successfully fit background model for 8,164,192 bp. Use segment r for 0 bp 2025-01-31 10:01:15,682 DEBUG chr4:110249251-113851751: Successfully fit background model for 3,161,597 bp. Use segment r for 0 bp 2025-01-31 10:01:15,721 DEBUG chrX:93751751-94825251: Successfully fit background model for 939,661 bp. Use segment r for 0 bp 2025-01-31 10:01:15,810 DEBUG chr4:113851751-115038251: Successfully fit background model for 1,089,280 bp. Use segment r for 0 bp 2025-01-31 10:01:15,828 DEBUG chr4:115038251-115102251: Successfully fit background model for 63,412 bp. Use segment r for 0 bp 2025-01-31 10:01:15,904 DEBUG chr4:115102251-115821751: Successfully fit background model for 545,531 bp. Use segment r for 0 bp 2025-01-31 10:01:15,905 DEBUG chr5:97559251-99972751: Successfully fit background model for 2,282,510 bp. Use segment r for 0 bp 2025-01-31 10:01:15,982 DEBUG chr2:101190251-107886751: Successfully fit background model for 6,360,082 bp. Use segment r for 0 bp 2025-01-31 10:01:16,125 DEBUG chr1:93845251-98596751: Successfully fit background model for 4,069,500 bp. Use segment r for 0 bp 2025-01-31 10:01:16,131 DEBUG chrX:94825251-99000251: Successfully fit background model for 3,469,359 bp. Use segment r for 0 bp 2025-01-31 10:01:16,239 DEBUG chr5:99972751-103346251: Successfully fit background model for 3,167,133 bp. Use segment r for 0 bp 2025-01-31 10:01:16,298 DEBUG chr5:103346251-103833251: Successfully fit background model for 468,495 bp. Use segment r for 0 bp 2025-01-31 10:01:16,382 DEBUG chr2:107886751-112237751: Successfully fit background model for 3,815,449 bp. Use segment r for 0 bp 2025-01-31 10:01:16,433 DEBUG chr3:100358751-109788251: Successfully fit background model for 8,923,413 bp. Use segment r for 0 bp 2025-01-31 10:01:16,455 DEBUG chr4:115821751-121418751: Successfully fit background model for 5,317,807 bp. Use segment r for 0 bp 2025-01-31 10:01:16,457 DEBUG chr2:112237751-112873751: Successfully fit background model for 592,383 bp. Use segment r for 0 bp 2025-01-31 10:01:16,609 DEBUG chr4:121418751-122882251: Successfully fit background model for 654,578 bp. Use segment r for 0 bp 2025-01-31 10:01:16,699 DEBUG chr1:98596751-104469251: Successfully fit background model for 5,137,825 bp. Use segment r for 0 bp 2025-01-31 10:01:16,824 DEBUG chrX:99000251-105980751: Successfully fit background model for 6,277,929 bp. Use segment r for 0 bp 2025-01-31 10:01:16,926 DEBUG chr5:103833251-110092001: Successfully fit background model for 5,584,169 bp. Use segment r for 0 bp 2025-01-31 10:01:16,937 DEBUG chr1:104469251-106978751: Successfully fit background model for 2,330,657 bp. Use segment r for 0 bp 2025-01-31 10:01:16,959 DEBUG chr3:109788251-115230751: Successfully fit background model for 4,593,639 bp. Use segment r for 0 bp 2025-01-31 10:01:17,017 DEBUG chr4:122882251-127020751: Successfully fit background model for 4,012,669 bp. Use segment r for 0 bp 2025-01-31 10:01:17,038 DEBUG chr2:112873751-118652251: Successfully fit background model for 5,430,396 bp. Use segment r for 0 bp 2025-01-31 10:01:17,164 DEBUG chr4:127020751-128575501: Successfully fit background model for 1,515,745 bp. Use segment r for 0 bp 2025-01-31 10:01:17,186 DEBUG chr3:115230751-117539251: Successfully fit background model for 2,138,888 bp. Use segment r for 0 bp 2025-01-31 10:01:17,255 DEBUG chr5:110092001-113726251: Successfully fit background model for 3,538,404 bp. Use segment r for 0 bp 2025-01-31 10:01:17,429 DEBUG chr2:118652251-122841251: Successfully fit background model for 3,998,578 bp. Use segment r for 0 bp 2025-01-31 10:01:17,443 DEBUG chr5:113726251-115613251: Successfully fit background model for 1,836,224 bp. Use segment r for 0 bp 2025-01-31 10:01:17,463 DEBUG chr3:117539251-120388251: Successfully fit background model for 2,669,048 bp. Use segment r for 0 bp 2025-01-31 10:01:17,567 DEBUG chr2:122841251-124100251: Successfully fit background model for 1,128,008 bp. Use segment r for 0 bp 2025-01-31 10:01:17,636 DEBUG chrX:105980751-113492501: Successfully fit background model for 6,292,754 bp. Use segment r for 0 bp 2025-01-31 10:01:17,838 DEBUG chr3:120388251-123950751: Successfully fit background model for 3,357,226 bp. Use segment r for 0 bp 2025-01-31 10:01:17,856 DEBUG chr2:124100251-127207751: Successfully fit background model for 2,925,531 bp. Use segment r for 0 bp 2025-01-31 10:01:17,887 DEBUG chr5:115613251-120088251: Successfully fit background model for 4,381,180 bp. Use segment r for 0 bp 2025-01-31 10:01:17,988 DEBUG chr3:123950751-125485751: Successfully fit background model for 1,402,025 bp. Use segment r for 0 bp 2025-01-31 10:01:18,225 DEBUG chr1:106978751-118287251: Successfully fit background model for 9,849,541 bp. Use segment r for 0 bp 2025-01-31 10:01:18,410 DEBUG chr1:118287251-120005251: Successfully fit background model for 1,668,982 bp. Use segment r for 0 bp 2025-01-31 10:01:18,411 DEBUG chr5:120088251-125447751: Successfully fit background model for 5,133,973 bp. Use segment r for 0 bp 2025-01-31 10:01:18,554 DEBUG chr2:127207751-134135751: Successfully fit background model for 6,618,293 bp. Use segment r for 0 bp 2025-01-31 10:01:18,650 DEBUG chr4:128575501-141740751: Successfully fit background model for 12,695,543 bp. Use segment r for 0 bp 2025-01-31 10:01:18,661 DEBUG chr1:120005251-122591251: Successfully fit background model for 2,427,444 bp. Use segment r for 0 bp 2025-01-31 10:01:18,862 DEBUG chr5:125447751-129712251: Successfully fit background model for 4,077,976 bp. Use segment r for 0 bp 2025-01-31 10:01:18,902 DEBUG chr3:125485751-133756251: Successfully fit background model for 7,683,435 bp. Use segment r for 0 bp 2025-01-31 10:01:18,909 DEBUG chr5:129712251-130028751: Successfully fit background model for 257,844 bp. Use segment r for 0 bp 2025-01-31 10:01:18,943 DEBUG chr1:122591251-125397751: Successfully fit background model for 2,562,519 bp. Use segment r for 0 bp 2025-01-31 10:01:19,082 DEBUG chr3:133756251-135398251: Successfully fit background model for 1,454,527 bp. Use segment r for 0 bp 2025-01-31 10:01:19,157 DEBUG chr3:135398251-135980751: Successfully fit background model for 549,711 bp. Use segment r for 0 bp 2025-01-31 10:01:19,295 DEBUG chrX:113492501-124238001: Successfully fit background model for 8,408,029 bp. Use segment r for 1,987 bp 2025-01-31 10:01:19,312 DEBUG chr4:141740751-147860751: Successfully fit background model for 3,889,734 bp. Use segment r for 0 bp 2025-01-31 10:01:19,340 DEBUG chr5:130028751-134168751: Successfully fit background model for 3,973,308 bp. Use segment r for 0 bp 2025-01-31 10:01:19,493 DEBUG chr3:135980751-139189251: Successfully fit background model for 3,014,288 bp. Use segment r for 0 bp 2025-01-31 10:01:19,497 DEBUG chr1:125397751-130689751: Successfully fit background model for 4,942,385 bp. Use segment r for 0 bp 2025-01-31 10:01:19,767 DEBUG chr3:139189251-142010751: Successfully fit background model for 2,568,642 bp. Use segment r for 0 bp 2025-01-31 10:01:19,952 DEBUG chr3:142010751-143841501: Successfully fit background model for 1,766,680 bp. Use segment r for 0 bp 2025-01-31 10:01:20,046 DEBUG chr1:130689751-136343251: Successfully fit background model for 5,499,277 bp. Use segment r for 0 bp 2025-01-31 10:01:20,173 DEBUG chr4:147860751-156508116: Successfully fit background model for 8,229,725 bp. Use segment r for 0 bp 2025-01-31 10:01:20,264 DEBUG chr3:143841501-146820501: Successfully fit background model for 2,802,764 bp. Use segment r for 0 bp 2025-01-31 10:01:20,274 DEBUG chr2:134135751-149349501: Successfully fit background model for 14,184,209 bp. Use segment r for 0 bp 2025-01-31 10:01:20,363 DEBUG chr1:136343251-139558751: Successfully fit background model for 3,012,648 bp. Use segment r for 0 bp 2025-01-31 10:01:20,434 DEBUG chrX:126011000-133893751: Successfully fit background model for 6,777,653 bp. Use segment r for 1,806 bp 2025-01-31 10:01:20,458 DEBUG chr5:134168751-143978251: Successfully fit background model for 9,270,885 bp. Use segment r for 0 bp 2025-01-31 10:01:20,548 DEBUG chr2:149349501-151876251: Successfully fit background model for 2,029,289 bp. Use segment r for 0 bp 2025-01-31 10:01:20,748 DEBUG chr3:146820501-151608501: Successfully fit background model for 4,539,774 bp. Use segment r for 0 bp 2025-01-31 10:01:20,764 DEBUG chr1:139558751-143701751: Successfully fit background model for 3,524,490 bp. Use segment r for 0 bp 2025-01-31 10:01:20,848 DEBUG chr1:143701751-144406251: Successfully fit background model for 611,425 bp. Use segment r for 0 bp 2025-01-31 10:01:21,088 DEBUG chr3:151608501-155099751: Successfully fit background model for 3,297,357 bp. Use segment r for 0 bp 2025-01-31 10:01:21,248 DEBUG chr2:151876251-158591251: Successfully fit background model for 6,442,064 bp. Use segment r for 0 bp 2025-01-31 10:01:21,264 DEBUG chr5:143978251-151834684: Successfully fit background model for 7,167,972 bp. Use segment r for 0 bp 2025-01-31 10:01:21,295 DEBUG chr3:155099751-157107251: Successfully fit background model for 1,847,549 bp. Use segment r for 0 bp 2025-01-31 10:01:21,383 DEBUG chr1:144406251-149550001: Successfully fit background model for 4,511,185 bp. Use segment r for 0 bp 2025-01-31 10:01:21,412 DEBUG chr3:157107251-158123251: Successfully fit background model for 934,598 bp. Use segment r for 0 bp 2025-01-31 10:01:21,546 DEBUG chr1:149550001-151031251: Successfully fit background model for 1,373,022 bp. Use segment r for 0 bp 2025-01-31 10:01:21,561 DEBUG chr2:158591251-161666251: Successfully fit background model for 2,942,943 bp. Use segment r for 0 bp 2025-01-31 10:01:21,615 DEBUG chr3:158123251-160039680: Successfully fit background model for 1,550,007 bp. Use segment r for 0 bp 2025-01-31 10:01:21,723 DEBUG chr2:161666251-162926751: Successfully fit background model for 1,191,998 bp. Use segment r for 0 bp 2025-01-31 10:01:22,302 DEBUG chr2:162926751-168077251: Successfully fit background model for 4,969,952 bp. Use segment r for 0 bp 2025-01-31 10:01:22,828 DEBUG chr2:168077251-172996251: Successfully fit background model for 4,778,940 bp. Use segment r for 0 bp 2025-01-31 10:01:22,847 DEBUG chr2:172996251-173063251: Successfully fit background model for 66,844 bp. Use segment r for 0 bp 2025-01-31 10:01:23,065 DEBUG chr2:173063251-175179501: Successfully fit background model for 1,914,045 bp. Use segment r for 0 bp 2025-01-31 10:01:23,404 DEBUG chr2:176700000-179794251: Successfully fit background model for 1,904,766 bp. Use segment r for 0 bp 2025-01-31 10:01:23,647 DEBUG chr2:179794251-182113224: Successfully fit background model for 2,128,140 bp. Use segment r for 0 bp 2025-01-31 10:01:24,411 DEBUG chr1:151031251-171028251: Successfully fit background model for 18,815,391 bp. Use segment r for 0 bp 2025-01-31 10:01:24,586 DEBUG chr1:171028251-172294751: Successfully fit background model for 1,174,609 bp. Use segment r for 0 bp 2025-01-31 10:01:25,267 DEBUG chr1:172294751-178301751: Successfully fit background model for 5,421,220 bp. Use segment r for 0 bp 2025-01-31 10:01:25,555 DEBUG chr1:178301751-181307751: Successfully fit background model for 2,897,339 bp. Use segment r for 0 bp 2025-01-31 10:01:26,006 DEBUG chr1:181307751-185426251: Successfully fit background model for 3,841,421 bp. Use segment r for 0 bp 2025-01-31 10:01:26,548 DEBUG chr1:185426251-190867751: Successfully fit background model for 5,240,928 bp. Use segment r for 0 bp 2025-01-31 10:01:26,670 DEBUG chr1:190867751-191959751: Successfully fit background model for 1,050,015 bp. Use segment r for 0 bp 2025-01-31 10:01:27,047 DEBUG chr1:191959751-195471971: Successfully fit background model for 3,160,806 bp. Use segment r for 0 bp 2025-01-31 10:01:30,567 DEBUG chrX:133893751-169968751: Successfully fit background model for 29,918,702 bp. Use segment r for 2,469 bp 2025-01-31 10:01:30,751 DEBUG chrX:169968751-171031299: Successfully fit background model for 15,046 bp. Use segment r for 0 bp 2025-01-31 10:02:52,188 DEBUG chr6:3050000-9023751: Successfully fit background model for 5,305,159 bp. Use segment r for 0 bp 2025-01-31 10:02:52,343 DEBUG chr6:9023751-10737251: Successfully fit background model for 1,466,282 bp. Use segment r for 0 bp 2025-01-31 10:02:53,261 DEBUG chr7:3004000-3594751: Successfully fit background model for 444,045 bp. Use segment r for 0 bp 2025-01-31 10:02:53,274 DEBUG chr6:10737251-20012751: Successfully fit background model for 8,216,763 bp. Use segment r for 0 bp 2025-01-31 10:02:53,435 DEBUG chr7:3594751-5111751: Successfully fit background model for 1,215,399 bp. Use segment r for 0 bp 2025-01-31 10:02:53,504 DEBUG chr7:5111751-5724251: Successfully fit background model for 442,191 bp. Use segment r for 0 bp 2025-01-31 10:02:53,661 DEBUG chr7:5724251-7300751: Successfully fit background model for 1,331,081 bp. Use segment r for 0 bp 2025-01-31 10:02:54,028 DEBUG chr6:20012751-28260251: Successfully fit background model for 7,355,095 bp. Use segment r for 0 bp 2025-01-31 10:02:54,507 DEBUG chr7:7300751-12897251: Successfully fit background model for 2,161,974 bp. Use segment r for 6,033 bp 2025-01-31 10:02:54,536 DEBUG chr7:12897251-13065251: Successfully fit background model for 160,548 bp. Use segment r for 0 bp 2025-01-31 10:02:54,636 DEBUG chr6:28260251-35239251: Successfully fit background model for 6,677,811 bp. Use segment r for 0 bp 2025-01-31 10:02:54,839 DEBUG chr7:13065251-15912251: Successfully fit background model for 1,761,289 bp. Use segment r for 0 bp 2025-01-31 10:02:54,905 DEBUG chr6:35239251-38268751: Successfully fit background model for 2,798,730 bp. Use segment r for 0 bp 2025-01-31 10:02:54,969 DEBUG chr7:15912251-17093751: Successfully fit background model for 1,146,237 bp. Use segment r for 0 bp 2025-01-31 10:02:55,006 DEBUG chr6:38268751-39324751: Successfully fit background model for 1,031,612 bp. Use segment r for 0 bp 2025-01-31 10:02:55,261 DEBUG chr7:17093751-18947751: Successfully fit background model for 1,307,876 bp. Use segment r for 12,124 bp 2025-01-31 10:02:55,322 DEBUG chr7:18947751-19458251: Successfully fit background model for 502,016 bp. Use segment r for 0 bp 2025-01-31 10:02:55,393 DEBUG chr7:19458251-20073001: Successfully fit background model for 571,685 bp. Use segment r for 0 bp 2025-01-31 10:02:55,497 DEBUG chr6:39324751-43985751: Successfully fit background model for 4,177,758 bp. Use segment r for 0 bp 2025-01-31 10:02:55,609 DEBUG chr7:22785500-24074251: Successfully fit background model for 628,696 bp. Use segment r for 7,461 bp 2025-01-31 10:02:55,739 DEBUG chr6:43985751-46495001: Successfully fit background model for 2,270,162 bp. Use segment r for 0 bp 2025-01-31 10:02:55,824 DEBUG chr7:24074251-25919251: Successfully fit background model for 1,732,471 bp. Use segment r for 0 bp 2025-01-31 10:02:55,849 DEBUG chr6:46495001-47594251: Successfully fit background model for 983,523 bp. Use segment r for 0 bp 2025-01-31 10:02:55,886 DEBUG chr6:47594251-47876751: Successfully fit background model for 145,540 bp. Use segment r for 0 bp 2025-01-31 10:02:55,970 DEBUG chr7:25919251-27145251: Successfully fit background model for 959,126 bp. Use segment r for 0 bp 2025-01-31 10:02:56,380 DEBUG chr7:27145251-31151751: Successfully fit background model for 3,775,036 bp. Use segment r for 0 bp 2025-01-31 10:02:56,758 DEBUG chr7:31151751-33755501: Successfully fit background model for 1,025,114 bp. Use segment r for 2,862 bp 2025-01-31 10:02:56,984 DEBUG chr7:33755501-35927251: Successfully fit background model for 2,049,427 bp. Use segment r for 0 bp 2025-01-31 10:02:57,135 DEBUG chr7:35927251-37500751: Successfully fit background model for 1,532,784 bp. Use segment r for 0 bp 2025-01-31 10:02:57,181 DEBUG chr6:47876751-59323251: Successfully fit background model for 10,685,372 bp. Use segment r for 0 bp 2025-01-31 10:02:57,214 DEBUG chr7:37500751-38284501: Successfully fit background model for 771,890 bp. Use segment r for 0 bp 2025-01-31 10:02:57,217 DEBUG chr10:3101500-14834001: Successfully fit background model for 10,676,916 bp. Use segment r for 0 bp 2025-01-31 10:02:57,424 DEBUG chr10:14834001-16897501: Successfully fit background model for 1,800,068 bp. Use segment r for 0 bp 2025-01-31 10:02:57,471 DEBUG chr6:59323251-62453251: Successfully fit background model for 2,773,749 bp. Use segment r for 0 bp 2025-01-31 10:02:57,683 DEBUG chr7:38284501-42889501: Successfully fit background model for 3,209,611 bp. Use segment r for 0 bp 2025-01-31 10:02:57,832 DEBUG chr7:42889501-44373251: Successfully fit background model for 1,302,136 bp. Use segment r for 0 bp 2025-01-31 10:02:57,871 DEBUG chr6:62453251-66962251: Successfully fit background model for 4,006,737 bp. Use segment r for 0 bp 2025-01-31 10:02:57,965 DEBUG chr6:66962251-67800251: Successfully fit background model for 742,376 bp. Use segment r for 0 bp 2025-01-31 10:02:57,971 DEBUG chr7:44373251-45682251: Successfully fit background model for 1,284,184 bp. Use segment r for 0 bp 2025-01-31 10:02:58,122 DEBUG chr7:45682251-47169251: Successfully fit background model for 1,457,234 bp. Use segment r for 0 bp 2025-01-31 10:02:58,244 DEBUG chr7:47169251-48369751: Successfully fit background model for 956,217 bp. Use segment r for 0 bp 2025-01-31 10:02:58,244 DEBUG chr6:67800251-70709251: Successfully fit background model for 2,286,377 bp. Use segment r for 0 bp 2025-01-31 10:02:58,400 DEBUG chr7:48369751-49958251: Successfully fit background model for 1,494,809 bp. Use segment r for 0 bp 2025-01-31 10:02:58,544 DEBUG chr6:70709251-73936751: Successfully fit background model for 3,045,813 bp. Use segment r for 0 bp 2025-01-31 10:02:58,555 DEBUG chr7:49958251-51515251: Successfully fit background model for 1,327,057 bp. Use segment r for 0 bp 2025-01-31 10:02:58,611 DEBUG chr7:51515251-52023251: Successfully fit background model for 477,453 bp. Use segment r for 0 bp 2025-01-31 10:02:58,892 DEBUG chr10:16897501-29535251: Successfully fit background model for 11,604,340 bp. Use segment r for 0 bp 2025-01-31 10:02:58,947 DEBUG chr7:52023251-55411001: Successfully fit background model for 2,987,420 bp. Use segment r for 0 bp 2025-01-31 10:02:59,080 DEBUG chr7:55411001-56693751: Successfully fit background model for 1,109,285 bp. Use segment r for 0 bp 2025-01-31 10:02:59,113 DEBUG chr6:73936751-79821251: Successfully fit background model for 5,297,555 bp. Use segment r for 0 bp 2025-01-31 10:02:59,368 DEBUG chr6:79821251-82652251: Successfully fit background model for 2,563,468 bp. Use segment r for 0 bp 2025-01-31 10:02:59,462 DEBUG chr6:82652251-83567751: Successfully fit background model for 896,061 bp. Use segment r for 0 bp 2025-01-31 10:02:59,626 DEBUG chr6:83567751-85154751: Successfully fit background model for 1,515,823 bp. Use segment r for 0 bp 2025-01-31 10:02:59,961 DEBUG chr10:29535251-38488751: Successfully fit background model for 8,064,845 bp. Use segment r for 0 bp 2025-01-31 10:03:00,138 DEBUG chr10:38488751-40106751: Successfully fit background model for 1,494,227 bp. Use segment r for 0 bp 2025-01-31 10:03:00,171 DEBUG chr7:56693751-63851751: Successfully fit background model for 5,938,088 bp. Use segment r for 998 bp 2025-01-31 10:03:00,299 DEBUG chr6:85154751-92003751: Successfully fit background model for 6,444,639 bp. Use segment r for 0 bp 2025-01-31 10:03:00,510 DEBUG chr10:40106751-43536751: Successfully fit background model for 3,293,156 bp. Use segment r for 0 bp 2025-01-31 10:03:00,689 DEBUG chr7:63851751-69110501: Successfully fit background model for 4,988,725 bp. Use segment r for 0 bp 2025-01-31 10:03:00,820 DEBUG chr10:43536751-46884751: Successfully fit background model for 3,111,157 bp. Use segment r for 0 bp 2025-01-31 10:03:01,084 DEBUG chr10:46884751-49827751: Successfully fit background model for 2,582,192 bp. Use segment r for 0 bp 2025-01-31 10:03:01,095 DEBUG chr7:69110501-73516251: Successfully fit background model for 4,119,246 bp. Use segment r for 0 bp 2025-01-31 10:03:01,218 DEBUG chr6:92003751-101915751: Successfully fit background model for 9,435,757 bp. Use segment r for 0 bp 2025-01-31 10:03:01,359 DEBUG chr7:73516251-76186751: Successfully fit background model for 2,456,475 bp. Use segment r for 0 bp 2025-01-31 10:03:01,527 DEBUG chr7:76186751-77901751: Successfully fit background model for 1,572,052 bp. Use segment r for 0 bp 2025-01-31 10:03:01,669 DEBUG chr7:77901751-79235751: Successfully fit background model for 1,281,448 bp. Use segment r for 0 bp 2025-01-31 10:03:01,845 DEBUG chr7:79235751-80945251: Successfully fit background model for 1,667,977 bp. Use segment r for 0 bp 2025-01-31 10:03:01,958 DEBUG chr10:49827751-58220751: Successfully fit background model for 7,151,858 bp. Use segment r for 0 bp 2025-01-31 10:03:02,230 DEBUG chr7:80945251-84886751: Successfully fit background model for 3,709,996 bp. Use segment r for 0 bp 2025-01-31 10:03:02,254 DEBUG chr6:101915751-112694751: Successfully fit background model for 9,749,546 bp. Use segment r for 0 bp 2025-01-31 10:03:02,357 DEBUG chr6:112694751-113624751: Successfully fit background model for 904,266 bp. Use segment r for 0 bp 2025-01-31 10:03:02,533 DEBUG chr10:58220751-64133751: Successfully fit background model for 5,651,780 bp. Use segment r for 0 bp 2025-01-31 10:03:02,581 DEBUG chr7:84886751-88635251: Successfully fit background model for 3,336,628 bp. Use segment r for 0 bp 2025-01-31 10:03:02,760 DEBUG chr7:88635251-90506251: Successfully fit background model for 1,702,514 bp. Use segment r for 0 bp 2025-01-31 10:03:02,799 DEBUG chr10:64133751-66075751: Successfully fit background model for 1,676,922 bp. Use segment r for 83,495 bp 2025-01-31 10:03:02,895 DEBUG chr7:90506251-91875001: Successfully fit background model for 1,279,791 bp. Use segment r for 0 bp 2025-01-31 10:03:03,013 DEBUG chr7:91875001-93081251: Successfully fit background model for 1,112,292 bp. Use segment r for 0 bp 2025-01-31 10:03:03,282 DEBUG chr7:93081251-95662501: Successfully fit background model for 2,288,569 bp. Use segment r for 0 bp 2025-01-31 10:03:03,391 DEBUG chr10:66075751-72012501: Successfully fit background model for 5,570,740 bp. Use segment r for 0 bp 2025-01-31 10:03:03,514 DEBUG chr7:95662501-98051251: Successfully fit background model for 2,264,361 bp. Use segment r for 0 bp 2025-01-31 10:03:03,526 DEBUG chr6:113624751-124662251: Successfully fit background model for 9,872,784 bp. Use segment r for 0 bp 2025-01-31 10:03:03,611 DEBUG chr6:124662251-125441751: Successfully fit background model for 736,751 bp. Use segment r for 0 bp 2025-01-31 10:03:03,719 DEBUG chr10:72012501-75496751: Successfully fit background model for 3,189,612 bp. Use segment r for 0 bp 2025-01-31 10:03:03,985 DEBUG chr10:75496751-78310751: Successfully fit background model for 2,719,680 bp. Use segment r for 0 bp 2025-01-31 10:03:04,010 DEBUG chr7:98051251-102853251: Successfully fit background model for 4,647,255 bp. Use segment r for 0 bp 2025-01-31 10:03:04,026 DEBUG chr6:125441751-129953751: Successfully fit background model for 4,255,261 bp. Use segment r for 0 bp 2025-01-31 10:03:04,118 DEBUG chr10:78310751-79608751: Successfully fit background model for 1,097,268 bp. Use segment r for 0 bp 2025-01-31 10:03:04,217 DEBUG chr7:102853251-104991251: Successfully fit background model for 1,765,177 bp. Use segment r for 0 bp 2025-01-31 10:03:04,323 DEBUG chr6:129953751-133331001: Successfully fit background model for 2,706,573 bp. Use segment r for 0 bp 2025-01-31 10:03:04,329 DEBUG chr7:104991251-106032751: Successfully fit background model for 775,997 bp. Use segment r for 0 bp 2025-01-31 10:03:04,360 DEBUG chr10:79608751-82142001: Successfully fit background model for 2,136,209 bp. Use segment r for 0 bp 2025-01-31 10:03:04,455 DEBUG chr6:133331001-134791251: Successfully fit background model for 1,302,057 bp. Use segment r for 0 bp 2025-01-31 10:03:04,474 DEBUG chr6:134791251-134932751: Successfully fit background model for 138,949 bp. Use segment r for 0 bp 2025-01-31 10:03:04,684 DEBUG chr7:106032751-108533251: Successfully fit background model for 1,947,627 bp. Use segment r for 5,120 bp 2025-01-31 10:03:04,789 DEBUG chr6:134932751-138485251: Successfully fit background model for 3,403,524 bp. Use segment r for 0 bp 2025-01-31 10:03:05,094 DEBUG chr6:138485251-141898751: Successfully fit background model for 3,149,421 bp. Use segment r for 0 bp 2025-01-31 10:03:05,378 DEBUG chr10:82142001-91080751: Successfully fit background model for 8,329,694 bp. Use segment r for 0 bp 2025-01-31 10:03:05,406 DEBUG chr10:91080751-91192251: Successfully fit background model for 108,632 bp. Use segment r for 0 bp 2025-01-31 10:03:05,614 DEBUG chr10:91192251-93042251: Successfully fit background model for 1,764,696 bp. Use segment r for 0 bp 2025-01-31 10:03:05,858 DEBUG chr6:141898751-149736546: Successfully fit background model for 7,210,843 bp. Use segment r for 0 bp 2025-01-31 10:03:06,084 DEBUG chr10:93042251-97568501: Successfully fit background model for 4,350,167 bp. Use segment r for 0 bp 2025-01-31 10:03:06,379 DEBUG chr10:97568501-100722751: Successfully fit background model for 2,836,902 bp. Use segment r for 0 bp 2025-01-31 10:03:06,609 DEBUG chr7:108533251-125402751: Successfully fit background model for 16,068,562 bp. Use segment r for 0 bp 2025-01-31 10:03:06,903 DEBUG chr7:125402751-128268751: Successfully fit background model for 2,767,507 bp. Use segment r for 0 bp 2025-01-31 10:03:07,047 DEBUG chr10:100722751-107495251: Successfully fit background model for 6,107,290 bp. Use segment r for 0 bp 2025-01-31 10:03:07,711 DEBUG chr10:107495251-113922751: Successfully fit background model for 5,997,682 bp. Use segment r for 0 bp 2025-01-31 10:03:08,371 DEBUG chr7:128268751-140805751: Successfully fit background model for 11,971,243 bp. Use segment r for 0 bp 2025-01-31 10:03:08,496 DEBUG chr7:140805751-141878251: Successfully fit background model for 1,005,662 bp. Use segment r for 0 bp 2025-01-31 10:03:08,642 DEBUG chr10:113922751-123480751: Successfully fit background model for 8,964,698 bp. Use segment r for 0 bp 2025-01-31 10:03:08,825 DEBUG chr7:141878251-145441459: Successfully fit background model for 3,342,796 bp. Use segment r for 0 bp 2025-01-31 10:03:08,962 DEBUG chr10:123480751-126892751: Successfully fit background model for 3,176,721 bp. Use segment r for 0 bp 2025-01-31 10:03:09,200 DEBUG chr10:126892751-129305251: Successfully fit background model for 2,275,620 bp. Use segment r for 0 bp 2025-01-31 10:03:09,336 DEBUG chr10:129305251-130694993: Successfully fit background model for 1,081,072 bp. Use segment r for 0 bp 2025-01-31 10:03:13,746 DEBUG chr8:3072500-4690751: Successfully fit background model for 1,417,880 bp. Use segment r for 0 bp 2025-01-31 10:03:14,022 DEBUG chr8:4690751-7513251: Successfully fit background model for 2,487,321 bp. Use segment r for 0 bp 2025-01-31 10:03:14,226 DEBUG chr8:7513251-9721751: Successfully fit background model for 2,073,521 bp. Use segment r for 0 bp 2025-01-31 10:03:14,791 DEBUG chr8:9721751-15308751: Successfully fit background model for 5,399,812 bp. Use segment r for 0 bp 2025-01-31 10:03:15,153 DEBUG chr8:15308751-17971751: Successfully fit background model for 2,412,302 bp. Use segment r for 8,220 bp 2025-01-31 10:03:16,290 DEBUG chr8:17971751-25596751: Successfully fit background model for 5,552,153 bp. Use segment r for 39,778 bp 2025-01-31 10:03:16,488 DEBUG chr8:25596751-27509751: Successfully fit background model for 1,819,456 bp. Use segment r for 0 bp 2025-01-31 10:03:16,813 DEBUG chr8:27509751-30609251: Successfully fit background model for 2,734,910 bp. Use segment r for 0 bp 2025-01-31 10:03:17,140 DEBUG chr8:30609251-33589751: Successfully fit background model for 2,751,693 bp. Use segment r for 0 bp 2025-01-31 10:03:17,437 DEBUG chr8:33589751-36748751: Successfully fit background model for 3,009,985 bp. Use segment r for 0 bp 2025-01-31 10:03:17,746 DEBUG chr8:36748751-39989251: Successfully fit background model for 2,906,218 bp. Use segment r for 0 bp 2025-01-31 10:03:17,904 DEBUG chr8:39989251-41566751: Successfully fit background model for 1,400,761 bp. Use segment r for 0 bp 2025-01-31 10:03:18,132 DEBUG chr8:41566751-43579001: Successfully fit background model for 1,780,426 bp. Use segment r for 0 bp 2025-01-31 10:03:18,716 DEBUG chr8:43579001-49051751: Successfully fit background model for 5,125,645 bp. Use segment r for 0 bp 2025-01-31 10:03:19,185 DEBUG chr8:49051751-54104251: Successfully fit background model for 4,608,981 bp. Use segment r for 0 bp 2025-01-31 10:03:19,550 DEBUG chr8:54104251-57960751: Successfully fit background model for 3,160,333 bp. Use segment r for 0 bp 2025-01-31 10:03:19,775 DEBUG chr8:57960751-60179751: Successfully fit background model for 1,949,784 bp. Use segment r for 0 bp 2025-01-31 10:03:20,843 DEBUG chr14:3006500-5127001: Successfully fit background model for 74,771 bp. Use segment r for 0 bp 2025-01-31 10:03:20,891 DEBUG chr8:60179751-69701251: Successfully fit background model for 8,457,930 bp. Use segment r for 0 bp 2025-01-31 10:03:21,153 DEBUG chr8:69701251-70930251: Successfully fit background model for 1,200,988 bp. Use segment r for 0 bp 2025-01-31 10:03:21,492 DEBUG chr8:70930251-72888251: Successfully fit background model for 1,636,836 bp. Use segment r for 0 bp 2025-01-31 10:03:21,647 DEBUG chr8:72888251-74383251: Successfully fit background model for 1,300,385 bp. Use segment r for 0 bp 2025-01-31 10:03:21,737 DEBUG chr8:74383251-75297751: Successfully fit background model for 802,886 bp. Use segment r for 0 bp 2025-01-31 10:03:21,845 DEBUG chr8:75297751-76390251: Successfully fit background model for 949,958 bp. Use segment r for 0 bp 2025-01-31 10:03:22,285 DEBUG chr8:76390251-81120501: Successfully fit background model for 4,449,229 bp. Use segment r for 0 bp 2025-01-31 10:03:22,518 DEBUG chr8:81120501-83566251: Successfully fit background model for 2,227,363 bp. Use segment r for 0 bp 2025-01-31 10:03:22,775 DEBUG chr8:83566251-85100751: Successfully fit background model for 1,506,355 bp. Use segment r for 0 bp 2025-01-31 10:03:23,551 DEBUG chr14:5838000-19741251: Successfully fit background model for 10,986,355 bp. Use segment r for 1,050 bp 2025-01-31 10:03:23,996 DEBUG chr14:19741251-22722251: Successfully fit background model for 2,885,901 bp. Use segment r for 0 bp 2025-01-31 10:03:24,057 DEBUG chr8:85100751-94160001: Successfully fit background model for 8,653,513 bp. Use segment r for 0 bp 2025-01-31 10:03:24,265 DEBUG chr8:94160001-96277251: Successfully fit background model for 2,012,152 bp. Use segment r for 0 bp 2025-01-31 10:03:24,870 DEBUG chr14:22722251-29885751: Successfully fit background model for 6,414,942 bp. Use segment r for 0 bp 2025-01-31 10:03:24,948 DEBUG chr8:96277251-103136251: Successfully fit background model for 6,275,099 bp. Use segment r for 0 bp 2025-01-31 10:03:25,204 DEBUG chr8:103136251-104532251: Successfully fit background model for 1,333,707 bp. Use segment r for 0 bp 2025-01-31 10:03:25,750 DEBUG chr8:104532251-107380251: Successfully fit background model for 2,667,982 bp. Use segment r for 0 bp 2025-01-31 10:03:25,929 DEBUG chr14:29885751-35186751: Successfully fit background model for 5,125,344 bp. Use segment r for 0 bp 2025-01-31 10:03:25,962 DEBUG chr8:107380251-109667751: Successfully fit background model for 2,219,484 bp. Use segment r for 0 bp 2025-01-31 10:03:26,153 DEBUG chr14:35186751-37142751: Successfully fit background model for 1,782,632 bp. Use segment r for 0 bp 2025-01-31 10:03:26,304 DEBUG chr8:109667751-112817251: Successfully fit background model for 3,043,433 bp. Use segment r for 0 bp 2025-01-31 10:03:26,554 DEBUG chr14:37142751-40520251: Successfully fit background model for 3,023,701 bp. Use segment r for 0 bp 2025-01-31 10:03:26,673 DEBUG chr14:40520251-41223751: Successfully fit background model for 623,506 bp. Use segment r for 0 bp 2025-01-31 10:03:26,951 DEBUG chr8:112817251-116866751: Successfully fit background model for 3,628,620 bp. Use segment r for 286,329 bp 2025-01-31 10:03:27,203 DEBUG chr8:116866751-119376251: Successfully fit background model for 2,436,028 bp. Use segment r for 0 bp 2025-01-31 10:03:27,319 DEBUG chr14:41223751-44812251: Successfully fit background model for 795,552 bp. Use segment r for 2,667 bp 2025-01-31 10:03:27,736 DEBUG chr8:119376251-124001251: Successfully fit background model for 4,424,253 bp. Use segment r for 0 bp 2025-01-31 10:03:27,894 DEBUG chr14:44812251-49530751: Successfully fit background model for 4,478,005 bp. Use segment r for 0 bp 2025-01-31 10:03:28,043 DEBUG chr14:49530751-50770251: Successfully fit background model for 1,033,569 bp. Use segment r for 0 bp 2025-01-31 10:03:28,052 DEBUG chr8:124001251-126854251: Successfully fit background model for 2,761,933 bp. Use segment r for 0 bp 2025-01-31 10:03:28,254 DEBUG chr14:50770251-52479751: Successfully fit background model for 1,478,799 bp. Use segment r for 0 bp 2025-01-31 10:03:28,349 DEBUG chr8:126854251-129401213: Successfully fit background model for 2,254,736 bp. Use segment r for 0 bp 2025-01-31 10:03:28,483 DEBUG chr14:52479751-54352251: Successfully fit background model for 1,084,231 bp. Use segment r for 0 bp 2025-01-31 10:03:28,649 DEBUG chr14:54352251-55659251: Successfully fit background model for 1,252,959 bp. Use segment r for 0 bp 2025-01-31 10:03:29,442 DEBUG chr9:3002500-7556251: Successfully fit background model for 3,945,239 bp. Use segment r for 0 bp 2025-01-31 10:03:29,513 DEBUG chr9:7556251-8047751: Successfully fit background model for 452,412 bp. Use segment r for 0 bp 2025-01-31 10:03:30,126 DEBUG chr9:8047751-13296251: Successfully fit background model for 4,614,233 bp. Use segment r for 0 bp 2025-01-31 10:03:30,351 DEBUG chr9:13296251-15232751: Successfully fit background model for 1,757,449 bp. Use segment r for 0 bp 2025-01-31 10:03:30,646 DEBUG chr9:15232751-17524251: Successfully fit background model for 2,119,313 bp. Use segment r for 0 bp 2025-01-31 10:03:30,980 DEBUG chr9:17524251-20490751: Successfully fit background model for 2,524,873 bp. Use segment r for 0 bp 2025-01-31 10:03:31,141 DEBUG chr9:20490751-22011751: Successfully fit background model for 1,467,978 bp. Use segment r for 0 bp 2025-01-31 10:03:31,534 DEBUG chr9:22011751-25605251: Successfully fit background model for 3,311,532 bp. Use segment r for 0 bp 2025-01-31 10:03:31,841 DEBUG chr14:55659251-71284751: Successfully fit background model for 14,442,295 bp. Use segment r for 0 bp 2025-01-31 10:03:31,997 DEBUG chr14:71284751-72658751: Successfully fit background model for 1,264,166 bp. Use segment r for 0 bp 2025-01-31 10:03:32,009 DEBUG chr9:25605251-31028751: Successfully fit background model for 5,142,433 bp. Use segment r for 0 bp 2025-01-31 10:03:32,181 DEBUG chr9:31028751-32888251: Successfully fit background model for 1,793,976 bp. Use segment r for 0 bp 2025-01-31 10:03:32,294 DEBUG chr9:32888251-34132751: Successfully fit background model for 1,136,039 bp. Use segment r for 0 bp 2025-01-31 10:03:32,630 DEBUG chr9:34132751-37723751: Successfully fit background model for 3,285,993 bp. Use segment r for 0 bp 2025-01-31 10:03:32,717 DEBUG chr14:72658751-79887751: Successfully fit background model for 6,800,000 bp. Use segment r for 0 bp 2025-01-31 10:03:32,823 DEBUG chr9:37723751-39958251: Successfully fit background model for 1,992,756 bp. Use segment r for 0 bp 2025-01-31 10:03:33,085 DEBUG chr9:39958251-43100751: Successfully fit background model for 3,040,028 bp. Use segment r for 0 bp 2025-01-31 10:03:33,268 DEBUG chr14:79887751-86131251: Successfully fit background model for 5,587,454 bp. Use segment r for 0 bp 2025-01-31 10:03:33,336 DEBUG chr9:43100751-45837251: Successfully fit background model for 2,684,030 bp. Use segment r for 0 bp 2025-01-31 10:03:33,416 DEBUG chr14:86131251-87616251: Successfully fit background model for 1,385,265 bp. Use segment r for 0 bp 2025-01-31 10:03:34,218 DEBUG chr9:45837251-54477751: Successfully fit background model for 8,238,502 bp. Use segment r for 0 bp 2025-01-31 10:03:34,697 DEBUG chr14:87616251-98697751: Successfully fit background model for 10,070,206 bp. Use segment r for 0 bp 2025-01-31 10:03:35,191 DEBUG chr14:98697751-103558251: Successfully fit background model for 4,518,440 bp. Use segment r for 0 bp 2025-01-31 10:03:35,441 DEBUG chr14:103558251-106122001: Successfully fit background model for 2,340,397 bp. Use segment r for 0 bp 2025-01-31 10:03:35,706 DEBUG chr9:54477751-66938751: Successfully fit background model for 12,064,388 bp. Use segment r for 0 bp 2025-01-31 10:03:36,295 DEBUG chr14:106122001-115040251: Successfully fit background model for 8,000,278 bp. Use segment r for 0 bp 2025-01-31 10:03:36,867 DEBUG chr14:115040251-121242251: Successfully fit background model for 5,782,219 bp. Use segment r for 0 bp 2025-01-31 10:03:36,881 DEBUG chr9:66938751-78791751: Successfully fit background model for 11,204,563 bp. Use segment r for 0 bp 2025-01-31 10:03:36,971 DEBUG chr14:121242251-122162251: Successfully fit background model for 902,483 bp. Use segment r for 0 bp 2025-01-31 10:03:37,259 DEBUG chr14:122162251-124902244: Successfully fit background model for 2,270,297 bp. Use segment r for 0 bp 2025-01-31 10:03:37,996 DEBUG chr9:78791751-90560751: Successfully fit background model for 10,288,167 bp. Use segment r for 0 bp 2025-01-31 10:03:38,363 DEBUG chr9:90560751-94158751: Successfully fit background model for 3,206,875 bp. Use segment r for 0 bp 2025-01-31 10:03:39,979 DEBUG chr9:94158751-106169751: Successfully fit background model for 11,458,655 bp. Use segment r for 0 bp 2025-01-31 10:03:40,524 DEBUG chr9:106169751-110824251: Successfully fit background model for 4,299,182 bp. Use segment r for 0 bp 2025-01-31 10:03:41,533 DEBUG chr9:110824251-119320251: Successfully fit background model for 8,022,117 bp. Use segment r for 0 bp 2025-01-31 10:03:42,018 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:04:22,169 DEBUG chr11:3100500-3203251: Successfully fit background model for 75,714 bp. Use segment r for 0 bp 2025-01-31 10:04:22,508 DEBUG chr11:3203251-6715251: Successfully fit background model for 3,377,244 bp. Use segment r for 0 bp 2025-01-31 10:04:22,731 DEBUG chr11:6715251-9142251: Successfully fit background model for 2,187,950 bp. Use segment r for 0 bp 2025-01-31 10:04:22,919 DEBUG chr11:9142251-11152751: Successfully fit background model for 1,778,217 bp. Use segment r for 0 bp 2025-01-31 10:04:23,071 DEBUG chr11:11152751-12712501: Successfully fit background model for 1,422,813 bp. Use segment r for 0 bp 2025-01-31 10:04:23,414 DEBUG chr11:12712501-16089001: Successfully fit background model for 2,976,300 bp. Use segment r for 0 bp 2025-01-31 10:04:23,535 DEBUG chr11:16089001-17308251: Successfully fit background model for 1,102,857 bp. Use segment r for 0 bp 2025-01-31 10:04:23,752 DEBUG chr11:17308251-19400001: Successfully fit background model for 1,921,904 bp. Use segment r for 0 bp 2025-01-31 10:04:24,209 DEBUG chr11:19400001-24188751: Successfully fit background model for 4,511,453 bp. Use segment r for 0 bp 2025-01-31 10:04:24,603 DEBUG chr11:24188751-28814751: Successfully fit background model for 4,167,638 bp. Use segment r for 0 bp 2025-01-31 10:04:25,121 DEBUG chr11:28814751-34842251: Successfully fit background model for 5,536,745 bp. Use segment r for 0 bp 2025-01-31 10:04:25,385 DEBUG chr11:34842251-37980751: Successfully fit background model for 3,039,747 bp. Use segment r for 0 bp 2025-01-31 10:04:25,568 DEBUG chr11:37980751-40072751: Successfully fit background model for 1,970,170 bp. Use segment r for 0 bp 2025-01-31 10:04:26,461 DEBUG chr11:40072751-48770751: Successfully fit background model for 7,988,652 bp. Use segment r for 0 bp 2025-01-31 10:04:26,485 DEBUG chr11:48770751-48875751: Successfully fit background model for 102,029 bp. Use segment r for 0 bp 2025-01-31 10:04:27,120 DEBUG chr11:48875751-55573751: Successfully fit background model for 6,293,231 bp. Use segment r for 0 bp 2025-01-31 10:04:27,237 DEBUG chr11:55573751-56743251: Successfully fit background model for 1,078,033 bp. Use segment r for 0 bp 2025-01-31 10:04:27,458 DEBUG chr11:56743251-58903251: Successfully fit background model for 2,043,613 bp. Use segment r for 0 bp 2025-01-31 10:04:27,625 DEBUG chr11:58903251-60697251: Successfully fit background model for 1,663,130 bp. Use segment r for 0 bp 2025-01-31 10:04:28,473 DEBUG chr11:60697251-68965251: Successfully fit background model for 7,995,060 bp. Use segment r for 0 bp 2025-01-31 10:04:28,646 DEBUG chr11:68965251-70701251: Successfully fit background model for 1,696,095 bp. Use segment r for 0 bp 2025-01-31 10:04:28,886 DEBUG chr11:70701251-73326751: Successfully fit background model for 2,484,996 bp. Use segment r for 0 bp 2025-01-31 10:04:28,954 DEBUG chr11:73326751-74008251: Successfully fit background model for 558,035 bp. Use segment r for 0 bp 2025-01-31 10:04:29,029 DEBUG chr11:74008251-74827751: Successfully fit background model for 747,284 bp. Use segment r for 0 bp 2025-01-31 10:04:29,048 DEBUG chr11:74827751-74899251: Successfully fit background model for 63,792 bp. Use segment r for 0 bp 2025-01-31 10:04:29,481 DEBUG chr11:74899251-79632251: Successfully fit background model for 4,607,197 bp. Use segment r for 0 bp 2025-01-31 10:04:29,890 DEBUG chr11:79632251-84504251: Successfully fit background model for 4,654,451 bp. Use segment r for 0 bp 2025-01-31 10:04:30,315 DEBUG chr11:84504251-89582251: Successfully fit background model for 4,920,252 bp. Use segment r for 0 bp 2025-01-31 10:04:30,426 DEBUG chr11:89582251-90737751: Successfully fit background model for 1,105,117 bp. Use segment r for 0 bp 2025-01-31 10:04:30,673 DEBUG chr11:90737751-93345751: Successfully fit background model for 2,400,879 bp. Use segment r for 0 bp 2025-01-31 10:04:30,757 DEBUG chr11:93345751-94171251: Successfully fit background model for 783,344 bp. Use segment r for 0 bp 2025-01-31 10:04:31,011 DEBUG chr11:94171251-96759751: Successfully fit background model for 2,526,836 bp. Use segment r for 0 bp 2025-01-31 10:04:31,264 DEBUG chr11:96759751-99519751: Successfully fit background model for 2,700,827 bp. Use segment r for 0 bp 2025-01-31 10:04:31,342 DEBUG chr11:99519751-100253751: Successfully fit background model for 670,286 bp. Use segment r for 0 bp 2025-01-31 10:04:31,594 DEBUG chr11:100253751-102888751: Successfully fit background model for 2,580,624 bp. Use segment r for 0 bp 2025-01-31 10:04:31,638 DEBUG chr12:3000500-5412251: Successfully fit background model for 2,217,998 bp. Use segment r for 0 bp 2025-01-31 10:04:31,811 DEBUG chr12:5412251-7156001: Successfully fit background model for 1,554,493 bp. Use segment r for 0 bp 2025-01-31 10:04:32,092 DEBUG chr12:7156001-10026751: Successfully fit background model for 2,668,084 bp. Use segment r for 0 bp 2025-01-31 10:04:32,148 DEBUG chr11:102888751-108499751: Successfully fit background model for 5,394,374 bp. Use segment r for 0 bp 2025-01-31 10:04:32,340 DEBUG chr11:108499751-110609251: Successfully fit background model for 2,025,437 bp. Use segment r for 0 bp 2025-01-31 10:04:32,451 DEBUG chr13:3000500-21158251: Successfully fit background model for 15,924,682 bp. Use segment r for 0 bp 2025-01-31 10:04:32,493 DEBUG chr13:21158251-21280251: Successfully fit background model for 117,989 bp. Use segment r for 0 bp 2025-01-31 10:04:32,517 DEBUG chr11:110609251-112425751: Successfully fit background model for 1,732,969 bp. Use segment r for 0 bp 2025-01-31 10:04:32,538 DEBUG chr13:21280251-21709751: Successfully fit background model for 395,897 bp. Use segment r for 0 bp 2025-01-31 10:04:32,573 DEBUG chr13:21709751-22059251: Successfully fit background model for 293,828 bp. Use segment r for 0 bp 2025-01-31 10:04:32,683 DEBUG chr13:22059251-23284251: Successfully fit background model for 918,634 bp. Use segment r for 0 bp 2025-01-31 10:04:32,718 DEBUG chr13:23284251-23618751: Successfully fit background model for 314,365 bp. Use segment r for 0 bp 2025-01-31 10:04:32,735 DEBUG chr12:10026751-16785751: Successfully fit background model for 6,158,183 bp. Use segment r for 0 bp 2025-01-31 10:04:32,757 DEBUG chr11:112425751-115145251: Successfully fit background model for 2,623,207 bp. Use segment r for 0 bp 2025-01-31 10:04:32,873 DEBUG chr13:23618751-25272751: Successfully fit background model for 1,552,208 bp. Use segment r for 0 bp 2025-01-31 10:04:32,882 DEBUG chr12:16785751-18241751: Successfully fit background model for 1,225,735 bp. Use segment r for 0 bp 2025-01-31 10:04:33,112 DEBUG chr13:25272751-27906751: Successfully fit background model for 2,366,025 bp. Use segment r for 0 bp 2025-01-31 10:04:33,409 DEBUG chr11:115145251-122082543: Successfully fit background model for 6,621,503 bp. Use segment r for 0 bp 2025-01-31 10:04:33,858 DEBUG chr12:18241751-24555251: Successfully fit background model for 2,087,962 bp. Use segment r for 1,434 bp 2025-01-31 10:04:33,914 DEBUG chr12:24555251-24927251: Successfully fit background model for 356,921 bp. Use segment r for 0 bp 2025-01-31 10:04:34,321 DEBUG chr13:27906751-37818251: Successfully fit background model for 9,039,468 bp. Use segment r for 0 bp 2025-01-31 10:04:34,411 DEBUG chr13:37818251-38501751: Successfully fit background model for 669,006 bp. Use segment r for 0 bp 2025-01-31 10:04:34,886 DEBUG chr13:38501751-43134751: Successfully fit background model for 4,397,316 bp. Use segment r for 0 bp 2025-01-31 10:04:35,304 DEBUG chr12:24927251-36806251: Successfully fit background model for 11,170,123 bp. Use segment r for 0 bp 2025-01-31 10:04:35,562 DEBUG chr12:36806251-39270251: Successfully fit background model for 2,261,237 bp. Use segment r for 0 bp 2025-01-31 10:04:35,819 DEBUG chr13:43134751-51829251: Successfully fit background model for 8,004,583 bp. Use segment r for 0 bp 2025-01-31 10:04:36,081 DEBUG chr13:51829251-54501751: Successfully fit background model for 2,584,162 bp. Use segment r for 0 bp 2025-01-31 10:04:36,203 DEBUG chr13:54501751-55703751: Successfully fit background model for 1,160,563 bp. Use segment r for 0 bp 2025-01-31 10:04:36,433 DEBUG chr13:55703751-58003751: Successfully fit background model for 2,246,356 bp. Use segment r for 0 bp 2025-01-31 10:04:36,669 DEBUG chr12:39270251-46809251: Successfully fit background model for 6,686,882 bp. Use segment r for 130,587 bp 2025-01-31 10:04:36,724 DEBUG chr13:58003751-60937251: Successfully fit background model for 2,806,301 bp. Use segment r for 0 bp 2025-01-31 10:04:36,873 DEBUG chr12:46809251-48838251: Successfully fit background model for 1,823,970 bp. Use segment r for 0 bp 2025-01-31 10:04:37,061 DEBUG chr13:60937251-63277251: Successfully fit background model for 1,744,780 bp. Use segment r for 67,112 bp 2025-01-31 10:04:37,172 DEBUG chr13:63277251-64363751: Successfully fit background model for 1,054,841 bp. Use segment r for 0 bp 2025-01-31 10:04:37,983 DEBUG chr12:48838251-59890251: Successfully fit background model for 9,924,642 bp. Use segment r for 0 bp 2025-01-31 10:04:38,381 DEBUG chr12:59890251-63957251: Successfully fit background model for 3,568,135 bp. Use segment r for 0 bp 2025-01-31 10:04:38,415 DEBUG chr13:64363751-72266251: Successfully fit background model for 5,867,055 bp. Use segment r for 3,972 bp 2025-01-31 10:04:38,564 DEBUG chr12:63957251-65688251: Successfully fit background model for 1,560,915 bp. Use segment r for 0 bp 2025-01-31 10:04:38,596 DEBUG chr13:72266251-74015751: Successfully fit background model for 1,683,215 bp. Use segment r for 0 bp 2025-01-31 10:04:38,869 DEBUG chr13:74015751-76599751: Successfully fit background model for 2,318,625 bp. Use segment r for 0 bp 2025-01-31 10:04:38,888 DEBUG chr12:65688251-69119751: Successfully fit background model for 3,097,229 bp. Use segment r for 0 bp 2025-01-31 10:04:39,020 DEBUG chr13:76599751-78162751: Successfully fit background model for 1,367,554 bp. Use segment r for 0 bp 2025-01-31 10:04:39,032 DEBUG chr13:78162751-78214251: Successfully fit background model for 51,397 bp. Use segment r for 0 bp 2025-01-31 10:04:39,324 DEBUG chr13:78214251-80852751: Successfully fit background model for 2,367,038 bp. Use segment r for 0 bp 2025-01-31 10:04:39,425 DEBUG chr13:80852751-81784251: Successfully fit background model for 879,030 bp. Use segment r for 0 bp 2025-01-31 10:04:39,645 DEBUG chr13:81784251-83687001: Successfully fit background model for 1,750,163 bp. Use segment r for 0 bp 2025-01-31 10:04:39,657 DEBUG chr13:83687001-83739251: Successfully fit background model for 45,239 bp. Use segment r for 0 bp 2025-01-31 10:04:39,874 DEBUG chr13:83739251-85574751: Successfully fit background model for 1,656,747 bp. Use segment r for 0 bp 2025-01-31 10:04:40,221 DEBUG chr13:85574751-88750751: Successfully fit background model for 2,738,971 bp. Use segment r for 0 bp 2025-01-31 10:04:40,541 DEBUG chr12:69119751-83284251: Successfully fit background model for 13,407,269 bp. Use segment r for 0 bp 2025-01-31 10:04:40,611 DEBUG chr13:88750751-92528751: Successfully fit background model for 3,517,880 bp. Use segment r for 0 bp 2025-01-31 10:04:40,972 DEBUG chr12:83284251-87380751: Successfully fit background model for 3,992,042 bp. Use segment r for 0 bp 2025-01-31 10:04:41,482 DEBUG chr12:87380751-92269251: Successfully fit background model for 4,137,127 bp. Use segment r for 0 bp 2025-01-31 10:04:41,756 DEBUG chr13:92528751-101685751: Successfully fit background model for 8,625,368 bp. Use segment r for 0 bp 2025-01-31 10:04:42,067 DEBUG chr12:92269251-97563751: Successfully fit background model for 4,770,978 bp. Use segment r for 0 bp 2025-01-31 10:04:42,261 DEBUG chr12:97563751-99270751: Successfully fit background model for 1,582,878 bp. Use segment r for 0 bp 2025-01-31 10:04:42,945 DEBUG chr15:3050500-5098251: Successfully fit background model for 1,742,917 bp. Use segment r for 0 bp 2025-01-31 10:04:42,979 DEBUG chr13:101685751-111486001: Successfully fit background model for 9,102,737 bp. Use segment r for 0 bp 2025-01-31 10:04:42,980 DEBUG chr12:99270751-105849251: Successfully fit background model for 6,175,264 bp. Use segment r for 0 bp 2025-01-31 10:04:43,140 DEBUG chr13:111486001-112734251: Successfully fit background model for 1,198,431 bp. Use segment r for 0 bp 2025-01-31 10:04:43,288 DEBUG chr15:5098251-8086001: Successfully fit background model for 2,728,366 bp. Use segment r for 0 bp 2025-01-31 10:04:43,410 DEBUG chr13:112734251-115323751: Successfully fit background model for 2,455,861 bp. Use segment r for 0 bp 2025-01-31 10:04:43,456 DEBUG chr12:105849251-110371501: Successfully fit background model for 4,379,428 bp. Use segment r for 0 bp 2025-01-31 10:04:43,754 DEBUG chr12:110371501-113227251: Successfully fit background model for 2,774,561 bp. Use segment r for 0 bp 2025-01-31 10:04:43,824 DEBUG chr13:115323751-119363251: Successfully fit background model for 3,685,870 bp. Use segment r for 0 bp 2025-01-31 10:04:43,878 DEBUG chr15:8086001-13458251: Successfully fit background model for 4,973,342 bp. Use segment r for 0 bp 2025-01-31 10:04:43,999 DEBUG chr13:119363251-120421639: Successfully fit background model for 465,090 bp. Use segment r for 517 bp 2025-01-31 10:04:44,079 DEBUG chr12:113227251-116260251: Successfully fit background model for 2,501,599 bp. Use segment r for 0 bp 2025-01-31 10:04:44,300 DEBUG chr12:116260251-118318751: Successfully fit background model for 1,954,741 bp. Use segment r for 0 bp 2025-01-31 10:04:44,627 DEBUG chr12:118318751-120129022: Successfully fit background model for 1,517,621 bp. Use segment r for 0 bp 2025-01-31 10:04:45,482 DEBUG chr15:13458251-23161751: Successfully fit background model for 8,665,593 bp. Use segment r for 0 bp 2025-01-31 10:04:45,824 DEBUG chr15:23161751-25489751: Successfully fit background model for 2,066,733 bp. Use segment r for 0 bp 2025-01-31 10:04:45,901 DEBUG chr15:25489751-25994251: Successfully fit background model for 496,577 bp. Use segment r for 0 bp 2025-01-31 10:04:46,068 DEBUG chr15:25994251-27136751: Successfully fit background model for 1,052,738 bp. Use segment r for 0 bp 2025-01-31 10:04:46,213 DEBUG chr15:27136751-28109251: Successfully fit background model for 930,533 bp. Use segment r for 0 bp 2025-01-31 10:04:46,571 DEBUG chr16:3092500-5427751: Successfully fit background model for 1,901,544 bp. Use segment r for 0 bp 2025-01-31 10:04:46,685 DEBUG chr15:28109251-31091751: Successfully fit background model for 2,680,198 bp. Use segment r for 0 bp 2025-01-31 10:04:46,806 DEBUG chr15:31091751-31753251: Successfully fit background model for 626,546 bp. Use segment r for 0 bp 2025-01-31 10:04:46,861 DEBUG chr16:5427751-8037751: Successfully fit background model for 2,502,091 bp. Use segment r for 0 bp 2025-01-31 10:04:46,977 DEBUG chr16:8037751-9046751: Successfully fit background model for 939,320 bp. Use segment r for 0 bp 2025-01-31 10:04:47,023 DEBUG chr15:31753251-33490001: Successfully fit background model for 1,562,713 bp. Use segment r for 0 bp 2025-01-31 10:04:47,083 DEBUG chr16:9046751-10023751: Successfully fit background model for 925,996 bp. Use segment r for 0 bp 2025-01-31 10:04:47,581 DEBUG chr16:10023751-14484751: Successfully fit background model for 4,215,746 bp. Use segment r for 0 bp 2025-01-31 10:04:47,835 DEBUG chr16:14484751-17067751: Successfully fit background model for 2,257,935 bp. Use segment r for 0 bp 2025-01-31 10:04:48,030 DEBUG chr16:17067751-19015251: Successfully fit background model for 1,874,447 bp. Use segment r for 0 bp 2025-01-31 10:04:48,101 DEBUG chr16:19015251-19606251: Successfully fit background model for 462,838 bp. Use segment r for 0 bp 2025-01-31 10:04:48,477 DEBUG chr15:33490001-42682751: Successfully fit background model for 8,370,547 bp. Use segment r for 0 bp 2025-01-31 10:04:48,485 DEBUG chr16:19606251-23446251: Successfully fit background model for 3,581,282 bp. Use segment r for 0 bp 2025-01-31 10:04:48,632 DEBUG chr15:42682751-44056251: Successfully fit background model for 1,227,874 bp. Use segment r for 0 bp 2025-01-31 10:04:48,737 DEBUG chr15:44056251-44930751: Successfully fit background model for 790,400 bp. Use segment r for 0 bp 2025-01-31 10:04:49,087 DEBUG chr16:23446251-29333751: Successfully fit background model for 5,519,478 bp. Use segment r for 0 bp 2025-01-31 10:04:49,261 DEBUG chr15:44930751-50125251: Successfully fit background model for 4,658,550 bp. Use segment r for 0 bp 2025-01-31 10:04:49,971 DEBUG chr15:50125251-57172251: Successfully fit background model for 6,433,950 bp. Use segment r for 0 bp 2025-01-31 10:04:50,159 DEBUG chr16:29333751-39154751: Successfully fit background model for 9,387,033 bp. Use segment r for 0 bp 2025-01-31 10:04:50,253 DEBUG chr15:57172251-59935251: Successfully fit background model for 2,639,443 bp. Use segment r for 0 bp 2025-01-31 10:04:50,526 DEBUG chr16:39154751-43028251: Successfully fit background model for 3,608,140 bp. Use segment r for 0 bp 2025-01-31 10:04:50,751 DEBUG chr16:43028251-45167251: Successfully fit background model for 2,006,482 bp. Use segment r for 0 bp 2025-01-31 10:04:51,365 DEBUG chr16:45167251-50920251: Successfully fit background model for 5,212,843 bp. Use segment r for 0 bp 2025-01-31 10:04:51,395 DEBUG chr15:59935251-69153751: Successfully fit background model for 8,388,461 bp. Use segment r for 0 bp 2025-01-31 10:04:51,725 DEBUG chr15:69153751-72247251: Successfully fit background model for 2,835,790 bp. Use segment r for 0 bp 2025-01-31 10:04:51,823 DEBUG chr15:72247251-73059751: Successfully fit background model for 781,880 bp. Use segment r for 0 bp 2025-01-31 10:04:51,845 DEBUG chr15:73059751-73192251: Successfully fit background model for 124,958 bp. Use segment r for 0 bp 2025-01-31 10:04:51,848 DEBUG chr16:50920251-55820751: Successfully fit background model for 4,370,384 bp. Use segment r for 0 bp 2025-01-31 10:04:52,139 DEBUG chr16:55820751-58799251: Successfully fit background model for 2,674,048 bp. Use segment r for 0 bp 2025-01-31 10:04:52,165 DEBUG chr15:73192251-75856251: Successfully fit background model for 2,495,928 bp. Use segment r for 0 bp 2025-01-31 10:04:52,716 DEBUG chr16:58799251-64310001: Successfully fit background model for 4,891,115 bp. Use segment r for 0 bp 2025-01-31 10:04:52,954 DEBUG chr15:75856251-82258251: Successfully fit background model for 6,125,835 bp. Use segment r for 0 bp 2025-01-31 10:04:53,313 DEBUG chr15:82258251-85661251: Successfully fit background model for 3,236,287 bp. Use segment r for 0 bp 2025-01-31 10:04:53,662 DEBUG chr15:85661251-88813251: Successfully fit background model for 3,061,889 bp. Use segment r for 0 bp 2025-01-31 10:04:53,761 DEBUG chr15:88813251-89625751: Successfully fit background model for 780,096 bp. Use segment r for 0 bp 2025-01-31 10:04:54,037 DEBUG chr15:89625751-91970251: Successfully fit background model for 2,193,629 bp. Use segment r for 0 bp 2025-01-31 10:04:54,466 DEBUG chr16:64310001-79020251: Successfully fit background model for 13,419,220 bp. Use segment r for 0 bp 2025-01-31 10:04:54,688 DEBUG chr17:3000000-15835251: Successfully fit background model for 10,813,405 bp. Use segment r for 0 bp 2025-01-31 10:04:54,766 DEBUG chr15:91970251-98504251: Successfully fit background model for 6,188,834 bp. Use segment r for 0 bp 2025-01-31 10:04:54,878 DEBUG chr16:79020251-83108251: Successfully fit background model for 3,676,307 bp. Use segment r for 0 bp 2025-01-31 10:04:55,247 DEBUG chr15:98504251-103389251: Successfully fit background model for 4,731,243 bp. Use segment r for 0 bp 2025-01-31 10:04:55,297 DEBUG chr16:83108251-87431751: Successfully fit background model for 3,917,335 bp. Use segment r for 0 bp 2025-01-31 10:04:55,326 DEBUG chr15:103389251-104043685: Successfully fit background model for 407,919 bp. Use segment r for 0 bp 2025-01-31 10:04:55,334 DEBUG chr16:87431751-87691251: Successfully fit background model for 253,495 bp. Use segment r for 0 bp 2025-01-31 10:04:55,498 DEBUG chr17:15835251-23524501: Successfully fit background model for 6,344,326 bp. Use segment r for 0 bp 2025-01-31 10:04:55,569 DEBUG chr16:87691251-89762251: Successfully fit background model for 1,920,293 bp. Use segment r for 0 bp 2025-01-31 10:04:56,056 DEBUG chr16:89762251-94517751: Successfully fit background model for 4,610,835 bp. Use segment r for 0 bp 2025-01-31 10:04:56,338 DEBUG chr17:23524501-29365251: Successfully fit background model for 5,651,097 bp. Use segment r for 0 bp 2025-01-31 10:04:56,396 DEBUG chr16:94517751-98207768: Successfully fit background model for 3,433,479 bp. Use segment r for 0 bp 2025-01-31 10:04:57,064 DEBUG chr17:29365251-33816751: Successfully fit background model for 4,172,877 bp. Use segment r for 0 bp 2025-01-31 10:04:57,322 DEBUG chr17:33816751-36371251: Successfully fit background model for 2,304,801 bp. Use segment r for 0 bp 2025-01-31 10:04:57,401 DEBUG chr17:36371251-37086251: Successfully fit background model for 631,647 bp. Use segment r for 0 bp 2025-01-31 10:04:57,756 DEBUG chr17:37086251-40456251: Successfully fit background model for 2,859,966 bp. Use segment r for 0 bp 2025-01-31 10:04:58,112 DEBUG chr17:40456251-44191751: Successfully fit background model for 3,340,082 bp. Use segment r for 0 bp 2025-01-31 10:04:58,252 DEBUG chr17:44191751-45515251: Successfully fit background model for 1,275,662 bp. Use segment r for 0 bp 2025-01-31 10:04:58,572 DEBUG chr17:45515251-48649751: Successfully fit background model for 3,034,814 bp. Use segment r for 0 bp 2025-01-31 10:04:59,084 DEBUG chr17:48649751-53691751: Successfully fit background model for 4,747,801 bp. Use segment r for 0 bp 2025-01-31 10:04:59,300 DEBUG chr17:53691751-55930251: Successfully fit background model for 1,896,043 bp. Use segment r for 0 bp 2025-01-31 10:04:59,440 DEBUG chr17:55930251-57351751: Successfully fit background model for 1,392,367 bp. Use segment r for 0 bp 2025-01-31 10:04:59,925 DEBUG chr17:57351751-62211751: Successfully fit background model for 4,363,412 bp. Use segment r for 0 bp 2025-01-31 10:05:01,502 DEBUG chr17:62211751-75920251: Successfully fit background model for 12,878,703 bp. Use segment r for 0 bp 2025-01-31 10:05:01,692 DEBUG chr17:75920251-77807251: Successfully fit background model for 1,719,342 bp. Use segment r for 0 bp 2025-01-31 10:05:01,996 DEBUG chr17:77807251-81199751: Successfully fit background model for 3,241,643 bp. Use segment r for 0 bp 2025-01-31 10:05:02,142 DEBUG chr17:81199751-82606751: Successfully fit background model for 1,277,388 bp. Use segment r for 0 bp 2025-01-31 10:05:02,244 DEBUG chr17:82606751-83636251: Successfully fit background model for 936,554 bp. Use segment r for 0 bp 2025-01-31 10:05:02,827 DEBUG chr17:83636251-89179251: Successfully fit background model for 5,359,200 bp. Use segment r for 0 bp 2025-01-31 10:05:03,455 DEBUG chr17:89179251-94987271: Successfully fit background model for 5,162,766 bp. Use segment r for 0 bp 2025-01-31 10:05:46,215 DEBUG chr18:3000500-16935751: Successfully fit background model for 12,673,758 bp. Use segment r for 0 bp 2025-01-31 10:05:46,479 DEBUG chr18:16935751-19520751: Successfully fit background model for 2,274,737 bp. Use segment r for 0 bp 2025-01-31 10:05:47,179 DEBUG chr18:19520751-26273751: Successfully fit background model for 6,254,565 bp. Use segment r for 0 bp 2025-01-31 10:05:47,668 DEBUG chr18:26273751-31608251: Successfully fit background model for 4,919,135 bp. Use segment r for 0 bp 2025-01-31 10:05:47,948 DEBUG chr18:31608251-34313751: Successfully fit background model for 2,505,027 bp. Use segment r for 0 bp 2025-01-31 10:05:48,186 DEBUG chr18:34313751-36805751: Successfully fit background model for 2,434,346 bp. Use segment r for 0 bp 2025-01-31 10:05:48,300 DEBUG chr18:36805751-37814251: Successfully fit background model for 877,482 bp. Use segment r for 0 bp 2025-01-31 10:05:48,358 DEBUG chr18:37814251-38326251: Successfully fit background model for 504,623 bp. Use segment r for 0 bp 2025-01-31 10:05:49,835 DEBUG chr18:38326251-50637751: Successfully fit background model for 11,392,756 bp. Use segment r for 0 bp 2025-01-31 10:05:50,401 DEBUG chr18:50637751-56579751: Successfully fit background model for 5,502,943 bp. Use segment r for 0 bp 2025-01-31 10:05:50,715 DEBUG chr19:3080000-7619251: Successfully fit background model for 4,235,014 bp. Use segment r for 0 bp 2025-01-31 10:05:50,757 DEBUG chr18:56579751-60459251: Successfully fit background model for 3,611,933 bp. Use segment r for 0 bp 2025-01-31 10:05:50,783 DEBUG chr19:7619251-8222001: Successfully fit background model for 450,623 bp. Use segment r for 0 bp 2025-01-31 10:05:50,878 DEBUG chr18:60459251-61674751: Successfully fit background model for 1,190,738 bp. Use segment r for 0 bp 2025-01-31 10:05:51,063 DEBUG chr19:8222001-10983751: Successfully fit background model for 2,315,112 bp. Use segment r for 0 bp 2025-01-31 10:05:51,126 DEBUG chr19:10983751-11575751: Successfully fit background model for 525,621 bp. Use segment r for 0 bp 2025-01-31 10:05:51,177 DEBUG chr19:11575751-12016251: Successfully fit background model for 410,493 bp. Use segment r for 0 bp 2025-01-31 10:05:51,425 DEBUG chr18:61674751-67200251: Successfully fit background model for 5,278,719 bp. Use segment r for 0 bp 2025-01-31 10:05:51,479 DEBUG chr18:67200251-67634751: Successfully fit background model for 426,693 bp. Use segment r for 0 bp 2025-01-31 10:05:51,525 DEBUG chr19:12016251-15569751: Successfully fit background model for 3,222,484 bp. Use segment r for 0 bp 2025-01-31 10:05:51,706 DEBUG chr19:15569751-17508251: Successfully fit background model for 1,857,241 bp. Use segment r for 0 bp 2025-01-31 10:05:51,834 DEBUG chr18:67634751-71278251: Successfully fit background model for 3,397,798 bp. Use segment r for 0 bp 2025-01-31 10:05:52,049 DEBUG chr18:71278251-73571251: Successfully fit background model for 2,126,898 bp. Use segment r for 0 bp 2025-01-31 10:05:52,212 DEBUG chr19:17508251-22750751: Successfully fit background model for 4,875,162 bp. Use segment r for 0 bp 2025-01-31 10:05:52,451 DEBUG chr19:22750751-25157751: Successfully fit background model for 2,326,000 bp. Use segment r for 0 bp 2025-01-31 10:05:52,488 DEBUG chr18:73571251-78083251: Successfully fit background model for 4,239,687 bp. Use segment r for 0 bp 2025-01-31 10:05:52,684 DEBUG chr18:78083251-80079751: Successfully fit background model for 1,855,713 bp. Use segment r for 0 bp 2025-01-31 10:05:52,688 DEBUG chr19:25157751-27648251: Successfully fit background model for 2,357,550 bp. Use segment r for 0 bp 2025-01-31 10:05:52,726 DEBUG chr18:80079751-80410751: Successfully fit background model for 324,190 bp. Use segment r for 0 bp 2025-01-31 10:05:53,213 DEBUG chr19:27648251-33143751: Successfully fit background model for 5,259,610 bp. Use segment r for 0 bp 2025-01-31 10:05:53,269 DEBUG chr18:80410751-85664751: Successfully fit background model for 4,924,068 bp. Use segment r for 0 bp 2025-01-31 10:05:53,469 DEBUG chr19:33143751-35648751: Successfully fit background model for 2,207,767 bp. Use segment r for 0 bp 2025-01-31 10:05:53,781 DEBUG chr18:85664751-90702639: Successfully fit background model for 4,264,376 bp. Use segment r for 0 bp 2025-01-31 10:05:53,857 DEBUG chr19:35648751-39038251: Successfully fit background model for 3,245,249 bp. Use segment r for 0 bp 2025-01-31 10:05:53,963 DEBUG chr19:39038251-39917751: Successfully fit background model for 633,737 bp. Use segment r for 0 bp 2025-01-31 10:05:54,449 DEBUG chr19:39917751-44245751: Successfully fit background model for 4,127,715 bp. Use segment r for 0 bp 2025-01-31 10:05:54,725 DEBUG chr19:44245751-46983251: Successfully fit background model for 2,661,307 bp. Use segment r for 0 bp 2025-01-31 10:05:54,925 DEBUG chr19:46983251-48898251: Successfully fit background model for 1,849,425 bp. Use segment r for 0 bp 2025-01-31 10:05:55,211 DEBUG chr19:48898251-51669251: Successfully fit background model for 2,547,373 bp. Use segment r for 0 bp 2025-01-31 10:05:55,388 DEBUG chr19:51669251-53243251: Successfully fit background model for 1,465,144 bp. Use segment r for 0 bp 2025-01-31 10:05:55,462 DEBUG chr19:53243251-53830251: Successfully fit background model for 569,686 bp. Use segment r for 0 bp 2025-01-31 10:05:56,300 DEBUG chr19:53830251-61431566: Successfully fit background model for 7,204,424 bp. Use segment r for 0 bp 2025-01-31 10:06:57,672 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:06:57,677 INFO Calculating per-bp p-values 2025-01-31 10:06:57,678 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:06:57,741 DEBUG chr1: Calculating p-values 2025-01-31 10:06:57,745 DEBUG chrX: Calculating p-values 2025-01-31 10:06:57,746 DEBUG chr5: Calculating p-values 2025-01-31 10:06:57,746 DEBUG chr4: Calculating p-values 2025-01-31 10:06:57,747 DEBUG chr3: Calculating p-values 2025-01-31 10:06:57,747 DEBUG chr2: Calculating p-values 2025-01-31 10:07:28,164 DEBUG Saving p-values for chrX 2025-01-31 10:07:31,122 DEBUG Saving p-values for chr3 2025-01-31 10:07:35,933 DEBUG Saving p-values for chr5 2025-01-31 10:07:40,397 DEBUG Saving p-values for chr4 2025-01-31 10:07:47,692 DEBUG Saving p-values for chr2 2025-01-31 10:07:53,427 DEBUG Saving p-values for chr1 2025-01-31 10:07:58,701 DEBUG chr6: Calculating p-values 2025-01-31 10:07:59,774 DEBUG chr7: Calculating p-values 2025-01-31 10:08:04,156 DEBUG chr10: Calculating p-values 2025-01-31 10:08:12,717 DEBUG chr8: Calculating p-values 2025-01-31 10:08:29,848 DEBUG chr14: Calculating p-values 2025-01-31 10:08:34,149 DEBUG Saving p-values for chr6 2025-01-31 10:08:34,329 DEBUG Saving p-values for chr10 2025-01-31 10:08:35,262 DEBUG chr9: Calculating p-values 2025-01-31 10:08:37,961 DEBUG Saving p-values for chr7 2025-01-31 10:08:45,015 DEBUG Saving p-values for chr8 2025-01-31 10:08:52,500 DEBUG Saving p-values for chr14 2025-01-31 10:08:55,048 DEBUG chr11: Calculating p-values 2025-01-31 10:09:01,467 DEBUG chr13: Calculating p-values 2025-01-31 10:09:05,044 DEBUG chr12: Calculating p-values 2025-01-31 10:09:06,100 DEBUG chr15: Calculating p-values 2025-01-31 10:09:06,978 DEBUG Saving p-values for chr9 2025-01-31 10:09:19,072 DEBUG chr16: Calculating p-values 2025-01-31 10:09:30,797 DEBUG chr17: Calculating p-values 2025-01-31 10:09:34,435 DEBUG Saving p-values for chr11 2025-01-31 10:09:34,621 DEBUG Saving p-values for chr12 2025-01-31 10:09:35,840 DEBUG Saving p-values for chr13 2025-01-31 10:09:39,422 DEBUG Saving p-values for chr15 2025-01-31 10:09:43,110 DEBUG Saving p-values for chr16 2025-01-31 10:09:52,844 DEBUG chrY: Calculating p-values 2025-01-31 10:09:55,572 DEBUG chr18: Calculating p-values 2025-01-31 10:09:55,576 DEBUG Saving p-values for chr17 2025-01-31 10:09:55,753 DEBUG chr19: Calculating p-values 2025-01-31 10:10:14,044 DEBUG Saving p-values for chr19 2025-01-31 10:10:14,358 DEBUG Saving p-values for chr18 2025-01-31 10:10:34,133 DEBUG Results of calc_pvals emitted. 2025-01-31 10:10:34,133 INFO Converting threshold values to bigwig 2025-01-31 10:10:34,134 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:10:49,972 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:11:20,754 INFO Converting background quantile values to bigwig 2025-01-31 10:11:20,755 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:11:58,159 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:12:26,680 INFO Calculating per-bp FDRs 2025-01-31 10:12:26,682 DEBUG AG81947: Extracting raw P-values 2025-01-31 10:13:01,943 DEBUG AG81947: Computing FDR 2025-01-31 10:13:18,272 DEBUG AG81947: Saving FDRs to parquet 2025-01-31 10:14:04,985 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:14:04,989 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:14:04,990 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:08,007 DEBUG chr4: Calling hotspots 2025-01-31 10:14:08,201 DEBUG chr5: Calling hotspots 2025-01-31 10:14:08,369 DEBUG chr3: Calling hotspots 2025-01-31 10:14:08,572 DEBUG chrX: Calling hotspots 2025-01-31 10:14:08,863 DEBUG chr2: Calling hotspots 2025-01-31 10:14:09,461 DEBUG chr1: Calling hotspots 2025-01-31 10:14:11,683 DEBUG chr4: 4367 hotspots called 2025-01-31 10:14:11,917 DEBUG chr5: 4323 hotspots called 2025-01-31 10:14:11,977 DEBUG chr3: 3187 hotspots called 2025-01-31 10:14:12,725 DEBUG chrX: 2010 hotspots called 2025-01-31 10:14:13,717 DEBUG chr2: 5174 hotspots called 2025-01-31 10:14:13,984 DEBUG chr1: 4300 hotspots called 2025-01-31 10:14:14,465 DEBUG chr10: Calling hotspots 2025-01-31 10:14:14,625 DEBUG chr6: Calling hotspots 2025-01-31 10:14:14,769 DEBUG chr7: Calling hotspots 2025-01-31 10:14:15,330 DEBUG chr8: Calling hotspots 2025-01-31 10:14:15,836 DEBUG chr14: Calling hotspots 2025-01-31 10:14:16,025 DEBUG chr9: Calling hotspots 2025-01-31 10:14:17,963 DEBUG chr10: 3146 hotspots called 2025-01-31 10:14:18,785 DEBUG chr8: 3273 hotspots called 2025-01-31 10:14:18,825 DEBUG chr7: 4192 hotspots called 2025-01-31 10:14:19,170 DEBUG chr6: 3302 hotspots called 2025-01-31 10:14:19,293 DEBUG chr9: 3622 hotspots called 2025-01-31 10:14:19,452 DEBUG chr14: 2165 hotspots called 2025-01-31 10:14:20,255 DEBUG chr11: Calling hotspots 2025-01-31 10:14:21,137 DEBUG chr13: Calling hotspots 2025-01-31 10:14:21,434 DEBUG chr12: Calling hotspots 2025-01-31 10:14:21,499 DEBUG chr15: Calling hotspots 2025-01-31 10:14:21,550 DEBUG chr17: Calling hotspots 2025-01-31 10:14:21,551 DEBUG chr16: Calling hotspots 2025-01-31 10:14:23,007 DEBUG chr11: 4945 hotspots called 2025-01-31 10:14:23,837 DEBUG chr13: 3067 hotspots called 2025-01-31 10:14:23,964 DEBUG chr16: 2177 hotspots called 2025-01-31 10:14:23,971 DEBUG chr15: 2648 hotspots called 2025-01-31 10:14:24,132 DEBUG chr17: 2907 hotspots called 2025-01-31 10:14:24,400 DEBUG chr18: Calling hotspots 2025-01-31 10:14:24,456 DEBUG chr12: 2454 hotspots called 2025-01-31 10:14:24,621 DEBUG chr19: Calling hotspots 2025-01-31 10:14:25,977 DEBUG chr19: 2146 hotspots called 2025-01-31 10:14:26,292 DEBUG chr18: 1797 hotspots called 2025-01-31 10:14:26,483 DEBUG Results of call_hotspots emitted. 2025-01-31 10:14:26,515 INFO There are 65202 hotspots called at FDR=0.05 2025-01-31 10:14:29,527 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:14:29,528 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:14:37,975 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:14:38,032 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:14:38,417 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:14:38,746 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:14:39,521 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:14:39,940 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:14:42,850 DEBUG chr4: 5230 peaks called 2025-01-31 10:14:43,090 DEBUG chr5: 5205 peaks called 2025-01-31 10:14:43,230 DEBUG chr3: 3879 peaks called 2025-01-31 10:14:44,095 DEBUG chrX: 2365 peaks called 2025-01-31 10:14:44,737 DEBUG chr2: 6242 peaks called 2025-01-31 10:14:45,944 DEBUG chr1: 5077 peaks called 2025-01-31 10:14:49,944 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:14:49,945 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:14:50,306 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:14:50,315 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:14:50,431 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:14:52,261 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:14:53,774 DEBUG chr10: 3778 peaks called 2025-01-31 10:14:54,116 DEBUG chr14: 2552 peaks called 2025-01-31 10:14:54,780 DEBUG chr8: 4019 peaks called 2025-01-31 10:14:54,900 DEBUG chr6: 3998 peaks called 2025-01-31 10:14:55,126 DEBUG chr7: 5225 peaks called 2025-01-31 10:14:56,310 DEBUG chr9: 4349 peaks called 2025-01-31 10:14:59,785 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:14:59,910 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:15:00,383 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:15:00,512 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:15:00,872 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:15:01,013 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:15:03,357 DEBUG chr11: 6222 peaks called 2025-01-31 10:15:03,400 DEBUG chr16: 2613 peaks called 2025-01-31 10:15:03,767 DEBUG chr17: 3613 peaks called 2025-01-31 10:15:03,776 DEBUG chr15: 3145 peaks called 2025-01-31 10:15:04,226 DEBUG chr13: 3746 peaks called 2025-01-31 10:15:04,757 DEBUG chr12: 2946 peaks called 2025-01-31 10:15:05,738 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:15:06,075 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:15:07,559 DEBUG chr19: 2675 peaks called 2025-01-31 10:15:08,636 DEBUG chr18: 2098 peaks called 2025-01-31 10:15:08,920 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:15:08,948 INFO There are 78977 peaks called at FDR=0.05 2025-01-31 10:15:10,275 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:15:10,275 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:15:13,625 DEBUG chr4: Calling hotspots 2025-01-31 10:15:13,792 DEBUG chr3: Calling hotspots 2025-01-31 10:15:13,803 DEBUG chr5: Calling hotspots 2025-01-31 10:15:13,934 DEBUG chrX: Calling hotspots 2025-01-31 10:15:14,381 DEBUG chr2: Calling hotspots 2025-01-31 10:15:14,595 DEBUG chr1: Calling hotspots 2025-01-31 10:15:17,363 DEBUG chr5: 3621 hotspots called 2025-01-31 10:15:17,639 DEBUG chr4: 3663 hotspots called 2025-01-31 10:15:17,790 DEBUG chr3: 2610 hotspots called 2025-01-31 10:15:17,844 DEBUG chrX: 1618 hotspots called 2025-01-31 10:15:18,863 DEBUG chr2: 4282 hotspots called 2025-01-31 10:15:19,586 DEBUG chr1: 3439 hotspots called 2025-01-31 10:15:20,120 DEBUG chr6: Calling hotspots 2025-01-31 10:15:20,221 DEBUG chr10: Calling hotspots 2025-01-31 10:15:20,565 DEBUG chr7: Calling hotspots 2025-01-31 10:15:20,624 DEBUG chr8: Calling hotspots 2025-01-31 10:15:21,128 DEBUG chr14: Calling hotspots 2025-01-31 10:15:21,826 DEBUG chr9: Calling hotspots 2025-01-31 10:15:23,762 DEBUG chr6: 2719 hotspots called 2025-01-31 10:15:23,896 DEBUG chr10: 2611 hotspots called 2025-01-31 10:15:24,059 DEBUG chr8: 2743 hotspots called 2025-01-31 10:15:24,599 DEBUG chr7: 3585 hotspots called 2025-01-31 10:15:24,719 DEBUG chr14: 1753 hotspots called 2025-01-31 10:15:25,270 DEBUG chr9: 3028 hotspots called 2025-01-31 10:15:26,122 DEBUG chr11: Calling hotspots 2025-01-31 10:15:26,269 DEBUG chr13: Calling hotspots 2025-01-31 10:15:26,322 DEBUG chr12: Calling hotspots 2025-01-31 10:15:26,630 DEBUG chr15: Calling hotspots 2025-01-31 10:15:26,735 DEBUG chr16: Calling hotspots 2025-01-31 10:15:26,930 DEBUG chr17: Calling hotspots 2025-01-31 10:15:29,087 DEBUG chr15: 2169 hotspots called 2025-01-31 10:15:29,190 DEBUG chr16: 1725 hotspots called 2025-01-31 10:15:29,194 DEBUG chr17: 2456 hotspots called 2025-01-31 10:15:29,204 DEBUG chr11: 4218 hotspots called 2025-01-31 10:15:29,316 DEBUG chr13: 2559 hotspots called 2025-01-31 10:15:29,480 DEBUG chr12: 2021 hotspots called 2025-01-31 10:15:29,952 DEBUG chr19: Calling hotspots 2025-01-31 10:15:30,121 DEBUG chr18: Calling hotspots 2025-01-31 10:15:31,421 DEBUG chr19: 1828 hotspots called 2025-01-31 10:15:32,056 DEBUG chr18: 1421 hotspots called 2025-01-31 10:15:32,256 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:32,288 INFO There are 54069 hotspots called at FDR=0.01 2025-01-31 10:15:34,901 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:15:34,902 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:43,487 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:15:43,850 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:15:44,115 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:15:45,035 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:15:45,140 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:15:46,188 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:15:48,574 DEBUG chr4: 4433 peaks called 2025-01-31 10:15:48,685 DEBUG chr3: 3218 peaks called 2025-01-31 10:15:49,335 DEBUG chr5: 4385 peaks called 2025-01-31 10:15:50,170 DEBUG chrX: 1946 peaks called 2025-01-31 10:15:50,590 DEBUG chr2: 5248 peaks called 2025-01-31 10:15:52,241 DEBUG chr1: 4170 peaks called 2025-01-31 10:15:56,634 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:15:56,731 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:15:56,786 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:15:57,237 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:15:57,327 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:15:59,608 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:16:00,618 DEBUG chr14: 2110 peaks called 2025-01-31 10:16:00,995 DEBUG chr8: 3383 peaks called 2025-01-31 10:16:01,197 DEBUG chr10: 3181 peaks called 2025-01-31 10:16:01,812 DEBUG chr6: 3307 peaks called 2025-01-31 10:16:02,278 DEBUG chr7: 4458 peaks called 2025-01-31 10:16:03,683 DEBUG chr9: 3699 peaks called 2025-01-31 10:16:07,015 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:16:07,217 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:16:07,293 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:16:07,420 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:16:07,965 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:16:08,282 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:16:10,770 DEBUG chr13: 3162 peaks called 2025-01-31 10:16:10,838 DEBUG chr12: 2457 peaks called 2025-01-31 10:16:10,885 DEBUG chr15: 2615 peaks called 2025-01-31 10:16:10,997 DEBUG chr17: 3098 peaks called 2025-01-31 10:16:11,097 DEBUG chr16: 2129 peaks called 2025-01-31 10:16:11,385 DEBUG chr11: 5349 peaks called 2025-01-31 10:16:12,635 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:16:13,133 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:16:14,402 DEBUG chr19: 2295 peaks called 2025-01-31 10:16:15,587 DEBUG chr18: 1697 peaks called 2025-01-31 10:16:15,943 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:15,977 INFO There are 66340 peaks called at FDR=0.01 2025-01-31 10:16:17,760 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:16:17,760 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:21,561 DEBUG chr5: Calling hotspots 2025-01-31 10:16:21,584 DEBUG chr4: Calling hotspots 2025-01-31 10:16:21,747 DEBUG chr3: Calling hotspots 2025-01-31 10:16:21,841 DEBUG chrX: Calling hotspots 2025-01-31 10:16:22,062 DEBUG chr2: Calling hotspots 2025-01-31 10:16:22,388 DEBUG chr1: Calling hotspots 2025-01-31 10:16:25,230 DEBUG chr5: 3148 hotspots called 2025-01-31 10:16:25,566 DEBUG chr4: 3172 hotspots called 2025-01-31 10:16:25,598 DEBUG chr3: 2248 hotspots called 2025-01-31 10:16:26,015 DEBUG chrX: 1368 hotspots called 2025-01-31 10:16:26,918 DEBUG chr2: 3712 hotspots called 2025-01-31 10:16:27,590 DEBUG chr1: 2946 hotspots called 2025-01-31 10:16:28,142 DEBUG chr6: Calling hotspots 2025-01-31 10:16:28,171 DEBUG chr10: Calling hotspots 2025-01-31 10:16:28,236 DEBUG chr7: Calling hotspots 2025-01-31 10:16:28,350 DEBUG chr8: Calling hotspots 2025-01-31 10:16:29,216 DEBUG chr14: Calling hotspots 2025-01-31 10:16:29,707 DEBUG chr9: Calling hotspots 2025-01-31 10:16:31,021 DEBUG chr10: 2248 hotspots called 2025-01-31 10:16:31,421 DEBUG chr6: 2345 hotspots called 2025-01-31 10:16:31,616 DEBUG chr8: 2412 hotspots called 2025-01-31 10:16:31,661 DEBUG chr7: 3162 hotspots called 2025-01-31 10:16:32,191 DEBUG chr14: 1511 hotspots called 2025-01-31 10:16:33,008 DEBUG chr9: 2670 hotspots called 2025-01-31 10:16:33,065 DEBUG chr11: Calling hotspots 2025-01-31 10:16:33,527 DEBUG chr12: Calling hotspots 2025-01-31 10:16:33,589 DEBUG chr15: Calling hotspots 2025-01-31 10:16:33,669 DEBUG chr13: Calling hotspots 2025-01-31 10:16:33,953 DEBUG chr16: Calling hotspots 2025-01-31 10:16:34,523 DEBUG chr17: Calling hotspots 2025-01-31 10:16:35,901 DEBUG chr11: 3748 hotspots called 2025-01-31 10:16:35,974 DEBUG chr15: 1872 hotspots called 2025-01-31 10:16:36,107 DEBUG chr16: 1480 hotspots called 2025-01-31 10:16:36,511 DEBUG chr12: 1729 hotspots called 2025-01-31 10:16:36,533 DEBUG chr13: 2163 hotspots called 2025-01-31 10:16:36,798 DEBUG chr17: 2146 hotspots called 2025-01-31 10:16:36,907 DEBUG chr19: Calling hotspots 2025-01-31 10:16:37,128 DEBUG chr18: Calling hotspots 2025-01-31 10:16:38,298 DEBUG chr19: 1575 hotspots called 2025-01-31 10:16:39,263 DEBUG chr18: 1199 hotspots called 2025-01-31 10:16:39,458 DEBUG Results of call_hotspots emitted. 2025-01-31 10:16:39,492 INFO There are 46854 hotspots called at FDR=0.001 2025-01-31 10:16:41,635 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:16:41,635 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:16:49,688 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:16:49,752 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:16:50,019 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:16:50,684 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:16:51,072 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:16:51,915 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:16:53,745 DEBUG chr5: 3800 peaks called 2025-01-31 10:16:53,874 DEBUG chr4: 3819 peaks called 2025-01-31 10:16:54,647 DEBUG chr3: 2745 peaks called 2025-01-31 10:16:55,716 DEBUG chrX: 1634 peaks called 2025-01-31 10:16:56,786 DEBUG chr2: 4516 peaks called 2025-01-31 10:16:58,161 DEBUG chr1: 3572 peaks called 2025-01-31 10:17:00,287 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:17:00,447 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:17:00,504 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:17:02,030 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:17:02,474 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:17:03,855 DEBUG chr10: 2739 peaks called 2025-01-31 10:17:03,981 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:17:04,499 DEBUG chr6: 2850 peaks called 2025-01-31 10:17:04,842 DEBUG chr7: 3920 peaks called 2025-01-31 10:17:06,050 DEBUG chr8: 2959 peaks called 2025-01-31 10:17:07,777 DEBUG chr14: 1811 peaks called 2025-01-31 10:17:08,134 DEBUG chr9: 3217 peaks called 2025-01-31 10:17:09,230 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:17:10,403 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:17:11,116 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:17:11,161 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:17:12,459 DEBUG chr11: 4686 peaks called 2025-01-31 10:17:12,509 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:17:12,733 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:17:13,758 DEBUG chr13: 2668 peaks called 2025-01-31 10:17:14,239 DEBUG chr15: 2262 peaks called 2025-01-31 10:17:15,036 DEBUG chr12: 2104 peaks called 2025-01-31 10:17:15,240 DEBUG chr17: 2678 peaks called 2025-01-31 10:17:15,330 DEBUG chr16: 1828 peaks called 2025-01-31 10:17:16,002 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:17:16,436 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:17:17,685 DEBUG chr19: 1962 peaks called 2025-01-31 10:17:19,095 DEBUG chr18: 1450 peaks called 2025-01-31 10:17:19,391 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:17:19,422 INFO There are 57220 peaks called at FDR=0.001 2025-01-31 10:17:20,445 INFO Saving density 2025-01-31 10:17:20,445 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:17:34,871 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:17:38,988 DEBUG Converting density to bigwig 2025-01-31 10:18:36,181 INFO Program finished