2025-01-31 09:31:53,922 DEBUG Chromosomes to process: ['chr1', 'chr10', 'chr11', 'chr12', 'chr13', 'chr14', 'chr15', 'chr16', 'chr17', 'chr18', 'chr19', 'chr2', 'chr3', 'chr4', 'chr5', 'chr6', 'chr7', 'chr8', 'chr9', 'chrX', 'chrY'] 2025-01-31 09:31:53,925 INFO Extracting cutcounts from bam file 2025-01-31 09:34:18,470 DEBUG Using 6 CPUs to get_total_cutcounts 2025-01-31 09:34:18,514 DEBUG chr1: Calculating total cutcounts 2025-01-31 09:34:18,517 DEBUG chrX: Calculating total cutcounts 2025-01-31 09:34:18,518 DEBUG chr3: Calculating total cutcounts 2025-01-31 09:34:18,518 DEBUG chr5: Calculating total cutcounts 2025-01-31 09:34:18,519 DEBUG chr2: Calculating total cutcounts 2025-01-31 09:34:18,520 DEBUG chr4: Calculating total cutcounts 2025-01-31 09:34:19,799 DEBUG chr6: Calculating total cutcounts 2025-01-31 09:34:20,767 DEBUG chr7: Calculating total cutcounts 2025-01-31 09:34:22,727 DEBUG chr10: Calculating total cutcounts 2025-01-31 09:34:22,950 DEBUG chr8: Calculating total cutcounts 2025-01-31 09:34:24,128 DEBUG chr14: Calculating total cutcounts 2025-01-31 09:34:24,221 DEBUG chr9: Calculating total cutcounts 2025-01-31 09:34:24,338 DEBUG chr11: Calculating total cutcounts 2025-01-31 09:34:24,393 DEBUG chr13: Calculating total cutcounts 2025-01-31 09:34:24,437 DEBUG chr12: Calculating total cutcounts 2025-01-31 09:34:24,571 DEBUG chr15: Calculating total cutcounts 2025-01-31 09:34:25,048 DEBUG chr16: Calculating total cutcounts 2025-01-31 09:34:25,443 DEBUG chr17: Calculating total cutcounts 2025-01-31 09:34:25,596 DEBUG chrY: Calculating total cutcounts 2025-01-31 09:34:25,696 DEBUG chr18: Calculating total cutcounts 2025-01-31 09:34:25,727 DEBUG chr19: Calculating total cutcounts 2025-01-31 09:34:26,513 DEBUG Results of get_total_cutcounts emitted. 2025-01-31 09:34:26,514 INFO Total cutcounts = 24277920 2025-01-31 09:34:26,520 INFO Smoothing signal using MODWT 2025-01-31 09:34:26,523 DEBUG Using 6 CPUs to smooth_density_modwt 2025-01-31 09:34:26,579 DEBUG chr1: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:26,585 DEBUG chr4: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:26,584 DEBUG chr2: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:26,586 DEBUG chrX: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:26,587 DEBUG chr3: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:34:26,596 DEBUG chr5: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:37,279 DEBUG chr6: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:41,480 DEBUG chr7: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:43,880 DEBUG chr10: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:37:46,946 DEBUG chr8: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:24,897 DEBUG chr14: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:38:39,848 DEBUG chr9: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:23,514 DEBUG chr11: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:31,082 DEBUG chr13: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:34,248 DEBUG chr12: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:34,627 DEBUG chr15: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:39:57,867 DEBUG chr16: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:40:32,704 DEBUG chr17: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:01,739 DEBUG chrY: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:05,623 DEBUG chr18: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:41:09,462 DEBUG chr19: Running modwt signal smoothing (filter=haar, level=7) 2025-01-31 09:42:20,554 DEBUG Results of smooth_density_modwt emitted. 2025-01-31 09:42:20,554 INFO Estimating parameters of background model 2025-01-31 09:42:20,554 DEBUG Using 6 CPUs to fit_background_model 2025-01-31 09:42:25,184 DEBUG chr5: Estimating proportion of background vs signal 2025-01-31 09:42:25,298 DEBUG chr3: Estimating proportion of background vs signal 2025-01-31 09:42:25,333 DEBUG chr4: Estimating proportion of background vs signal 2025-01-31 09:42:26,010 DEBUG chr2: Estimating proportion of background vs signal 2025-01-31 09:42:26,072 DEBUG chrX: Estimating proportion of background vs signal 2025-01-31 09:42:26,679 DEBUG chr1: Estimating proportion of background vs signal 2025-01-31 09:42:41,649 DEBUG chrX:0-171031299: Signal thresholds approximated 2025-01-31 09:42:41,651 DEBUG chrX: Signal quantile: 0.995. signal threshold: 11. Best RMSEA: 0.023 2025-01-31 09:42:42,155 DEBUG chr3:0-160039680: Signal thresholds approximated 2025-01-31 09:42:42,157 DEBUG chr3: Signal quantile: 0.992. signal threshold: 14. Best RMSEA: 0.015 2025-01-31 09:42:43,524 DEBUG chr4:0-156508116: Signal thresholds approximated 2025-01-31 09:42:43,526 DEBUG chr4: Signal quantile: 0.990. signal threshold: 14. Best RMSEA: 0.015 2025-01-31 09:42:43,866 DEBUG chr5:0-151834684: Signal thresholds approximated 2025-01-31 09:42:43,868 DEBUG chr5: Signal quantile: 0.990. signal threshold: 14. Best RMSEA: 0.014 2025-01-31 09:42:44,575 DEBUG chrX total SNP count: 242496 2025-01-31 09:42:44,575 DEBUG chrX length: 171031299 2025-01-31 09:42:44,575 DEBUG ----------------------------------------- 2025-01-31 09:42:44,575 INFO Processing SNPs in chrX 2025-01-31 09:42:44,936 DEBUG chr3 total SNP count: 265474 2025-01-31 09:42:44,937 DEBUG chr3 length: 160039680 2025-01-31 09:42:44,937 DEBUG ----------------------------------------- 2025-01-31 09:42:44,937 INFO Processing SNPs in chr3 2025-01-31 09:42:44,968 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 32774), (32774, 32776), (32776, 32827), (32827, 63912), (63912, 173222), (173222, 242496)] 2025-01-31 09:42:45,090 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:45,214 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 265474)] 2025-01-31 09:42:45,399 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:46,346 DEBUG chr4 total SNP count: 257843 2025-01-31 09:42:46,347 DEBUG chr4 length: 156508116 2025-01-31 09:42:46,347 DEBUG ----------------------------------------- 2025-01-31 09:42:46,347 INFO Processing SNPs in chr4 2025-01-31 09:42:46,511 DEBUG chr5 total SNP count: 255410 2025-01-31 09:42:46,512 DEBUG chr5 length: 151834684 2025-01-31 09:42:46,512 DEBUG ----------------------------------------- 2025-01-31 09:42:46,512 INFO Processing SNPs in chr5 2025-01-31 09:42:46,757 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 64776), (64776, 257843)] 2025-01-31 09:42:46,773 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 255410)] 2025-01-31 09:42:46,885 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:46,946 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:47,340 DEBUG chr2:0-182113224: Signal thresholds approximated 2025-01-31 09:42:47,342 DEBUG chr2: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.015 2025-01-31 09:42:48,443 DEBUG chr1:0-195471971: Signal thresholds approximated 2025-01-31 09:42:48,445 DEBUG chr1: Signal quantile: 0.992. signal threshold: 16. Best RMSEA: 0.014 2025-01-31 09:42:48,976 DEBUG Segmenting atomic regions: 2025-01-31 09:42:49,083 DEBUG Processing 1/108 atomic regions from SNP 0 to 601 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:50,562 DEBUG chr2 total SNP count: 313069 2025-01-31 09:42:50,562 DEBUG chr2 length: 182113224 2025-01-31 09:42:50,562 DEBUG ----------------------------------------- 2025-01-31 09:42:50,562 INFO Processing SNPs in chr2 2025-01-31 09:42:50,801 DEBUG Processing 2/108 atomic regions from SNP 301 to 902 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,013 DEBUG Processing 3/108 atomic regions from SNP 602 to 1203 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,053 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 305205), (305205, 313069)] 2025-01-31 09:42:51,219 DEBUG Processing 4/108 atomic regions from SNP 903 to 1504 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,265 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:51,429 DEBUG Processing 5/108 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,640 DEBUG Processing 6/108 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:51,816 DEBUG chr1 total SNP count: 338419 2025-01-31 09:42:51,816 DEBUG chr1 length: 195471971 2025-01-31 09:42:51,816 DEBUG ----------------------------------------- 2025-01-31 09:42:51,816 INFO Processing SNPs in chr1 2025-01-31 09:42:51,847 DEBUG Processing 7/108 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,060 DEBUG Processing 8/108 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,166 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 338419)] 2025-01-31 09:42:52,273 DEBUG Processing 9/108 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,399 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:42:52,483 DEBUG Processing 10/108 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,698 DEBUG Processing 11/108 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:52,918 DEBUG Processing 12/108 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,143 DEBUG Processing 13/108 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,370 DEBUG Processing 14/108 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,616 DEBUG Processing 15/108 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:53,868 DEBUG Processing 16/108 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,117 DEBUG Processing 17/108 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,362 DEBUG Processing 18/108 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,588 DEBUG Processing 19/108 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:54,596 DEBUG Segmenting atomic regions: 2025-01-31 09:42:54,712 DEBUG Processing 1/214 atomic regions from SNP 0 to 602 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:54,803 DEBUG Processing 20/108 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,028 DEBUG Processing 21/108 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,261 DEBUG Processing 22/108 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,499 DEBUG Processing 2/214 atomic regions from SNP 302 to 904 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,506 DEBUG Processing 23/108 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,730 DEBUG Processing 24/108 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,734 DEBUG Processing 3/214 atomic regions from SNP 604 to 1206 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:55,943 DEBUG Processing 25/108 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:55,971 DEBUG Processing 4/214 atomic regions from SNP 906 to 1508 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,153 DEBUG Processing 26/108 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,234 DEBUG Processing 5/214 atomic regions from SNP 1208 to 1810 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,361 DEBUG Processing 27/108 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,450 DEBUG Processing 6/214 atomic regions from SNP 1510 to 2112 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,571 DEBUG Processing 28/108 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,673 DEBUG Processing 7/214 atomic regions from SNP 1812 to 2414 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,780 DEBUG Processing 29/108 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:56,893 DEBUG Processing 8/214 atomic regions from SNP 2114 to 2716 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:56,991 DEBUG Processing 30/108 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,118 DEBUG Processing 9/214 atomic regions from SNP 2416 to 3018 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,228 DEBUG Processing 31/108 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,342 DEBUG Processing 10/214 atomic regions from SNP 2718 to 3320 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,439 DEBUG Processing 32/108 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,562 DEBUG Processing 11/214 atomic regions from SNP 3020 to 3622 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,653 DEBUG Processing 33/108 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:57,788 DEBUG Processing 12/214 atomic regions from SNP 3322 to 3924 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:57,867 DEBUG Processing 34/108 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,012 DEBUG Processing 13/214 atomic regions from SNP 3624 to 4226 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,079 DEBUG Processing 35/108 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,234 DEBUG Processing 14/214 atomic regions from SNP 3926 to 4528 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,292 DEBUG Processing 36/108 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,453 DEBUG Processing 15/214 atomic regions from SNP 4228 to 4830 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,506 DEBUG Processing 37/108 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,678 DEBUG Processing 16/214 atomic regions from SNP 4530 to 5132 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,736 DEBUG Processing 38/108 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:58,896 DEBUG Processing 17/214 atomic regions from SNP 4832 to 5434 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:58,977 DEBUG Processing 39/108 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,120 DEBUG Processing 18/214 atomic regions from SNP 5134 to 5736 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,213 DEBUG Processing 40/108 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,343 DEBUG Processing 19/214 atomic regions from SNP 5436 to 6038 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,433 DEBUG Processing 41/108 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,561 DEBUG Processing 20/214 atomic regions from SNP 5738 to 6340 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,648 DEBUG Processing 42/108 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 1 of 6). 2025-01-31 09:42:59,775 DEBUG Processing 21/214 atomic regions from SNP 6040 to 6642 for chr4 (subchromosome 1 of 2). 2025-01-31 09:42:59,864 DEBUG Processing 43/108 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,002 DEBUG Processing 22/214 atomic regions from SNP 6342 to 6944 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,091 DEBUG Processing 44/108 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,219 DEBUG Processing 23/214 atomic regions from SNP 6644 to 7246 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,315 DEBUG Processing 45/108 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,434 DEBUG Processing 24/214 atomic regions from SNP 6946 to 7548 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,551 DEBUG Processing 46/108 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,647 DEBUG Processing 25/214 atomic regions from SNP 7248 to 7850 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,771 DEBUG Processing 47/108 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:00,861 DEBUG Processing 26/214 atomic regions from SNP 7550 to 8152 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:00,973 DEBUG Processing 48/108 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,073 DEBUG Processing 27/214 atomic regions from SNP 7852 to 8454 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,176 DEBUG Processing 49/108 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,290 DEBUG Processing 28/214 atomic regions from SNP 8154 to 8756 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,389 DEBUG Processing 50/108 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,527 DEBUG Processing 29/214 atomic regions from SNP 8456 to 9058 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,610 DEBUG Processing 51/108 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,747 DEBUG Processing 30/214 atomic regions from SNP 8758 to 9360 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:01,817 DEBUG Processing 52/108 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:01,992 DEBUG Processing 31/214 atomic regions from SNP 9060 to 9662 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,028 DEBUG Processing 53/108 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,217 DEBUG Processing 32/214 atomic regions from SNP 9362 to 9964 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,236 DEBUG Processing 54/108 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,438 DEBUG Processing 33/214 atomic regions from SNP 9664 to 10266 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,445 DEBUG Processing 55/108 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,651 DEBUG Processing 56/108 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,655 DEBUG Processing 34/214 atomic regions from SNP 9966 to 10568 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:02,862 DEBUG Processing 57/108 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:02,874 DEBUG Processing 35/214 atomic regions from SNP 10268 to 10870 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,075 DEBUG Processing 58/108 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,096 DEBUG Processing 36/214 atomic regions from SNP 10570 to 11172 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,292 DEBUG Processing 59/108 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,321 DEBUG Processing 37/214 atomic regions from SNP 10872 to 11474 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,509 DEBUG Processing 60/108 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,546 DEBUG Processing 38/214 atomic regions from SNP 11174 to 11776 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,730 DEBUG Processing 61/108 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,774 DEBUG Processing 39/214 atomic regions from SNP 11476 to 12078 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:03,943 DEBUG Processing 62/108 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:03,996 DEBUG Processing 40/214 atomic regions from SNP 11778 to 12380 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,162 DEBUG Processing 63/108 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,216 DEBUG Processing 41/214 atomic regions from SNP 12080 to 12682 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,374 DEBUG Processing 64/108 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,435 DEBUG Processing 42/214 atomic regions from SNP 12382 to 12984 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,587 DEBUG Processing 65/108 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,655 DEBUG Processing 43/214 atomic regions from SNP 12684 to 13286 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:04,802 DEBUG Processing 66/108 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:04,897 DEBUG Processing 44/214 atomic regions from SNP 12986 to 13588 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,017 DEBUG Processing 67/108 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,150 DEBUG Processing 45/214 atomic regions from SNP 13288 to 13890 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,232 DEBUG Processing 68/108 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,404 DEBUG Processing 46/214 atomic regions from SNP 13590 to 14192 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,453 DEBUG Processing 69/108 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,631 DEBUG Processing 47/214 atomic regions from SNP 13892 to 14494 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,670 DEBUG Processing 70/108 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:05,855 DEBUG Processing 48/214 atomic regions from SNP 14194 to 14796 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:05,886 DEBUG Processing 71/108 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,081 DEBUG Processing 49/214 atomic regions from SNP 14496 to 15098 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,108 DEBUG Processing 72/108 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,305 DEBUG Processing 50/214 atomic regions from SNP 14798 to 15400 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,325 DEBUG Processing 73/108 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,538 DEBUG Processing 51/214 atomic regions from SNP 15100 to 15702 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,552 DEBUG Processing 74/108 atomic regions from SNP 21973 to 22573 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,761 DEBUG Processing 52/214 atomic regions from SNP 15402 to 16004 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:06,768 DEBUG Processing 75/108 atomic regions from SNP 22273 to 22873 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,986 DEBUG Processing 76/108 atomic regions from SNP 22573 to 23173 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:06,987 DEBUG Processing 53/214 atomic regions from SNP 15704 to 16306 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,201 DEBUG Processing 77/108 atomic regions from SNP 22873 to 23473 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,211 DEBUG Processing 54/214 atomic regions from SNP 16006 to 16608 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,419 DEBUG Processing 78/108 atomic regions from SNP 23173 to 23773 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,440 DEBUG Processing 55/214 atomic regions from SNP 16308 to 16910 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,635 DEBUG Processing 79/108 atomic regions from SNP 23473 to 24073 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,663 DEBUG Processing 56/214 atomic regions from SNP 16610 to 17212 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:07,843 DEBUG Processing 80/108 atomic regions from SNP 23773 to 24373 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:07,879 DEBUG Processing 57/214 atomic regions from SNP 16912 to 17514 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,054 DEBUG Processing 81/108 atomic regions from SNP 24073 to 24673 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,099 DEBUG Processing 58/214 atomic regions from SNP 17214 to 17816 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,263 DEBUG Processing 82/108 atomic regions from SNP 24373 to 24973 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,319 DEBUG Processing 59/214 atomic regions from SNP 17516 to 18118 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,476 DEBUG Processing 83/108 atomic regions from SNP 24673 to 25273 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,547 DEBUG Processing 60/214 atomic regions from SNP 17818 to 18420 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,683 DEBUG Processing 84/108 atomic regions from SNP 24973 to 25573 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,779 DEBUG Processing 61/214 atomic regions from SNP 18120 to 18722 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:08,893 DEBUG Processing 85/108 atomic regions from SNP 25273 to 25873 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:08,999 DEBUG Processing 62/214 atomic regions from SNP 18422 to 19023 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,121 DEBUG Processing 86/108 atomic regions from SNP 25573 to 26173 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,216 DEBUG Processing 63/214 atomic regions from SNP 18723 to 19324 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,351 DEBUG Processing 87/108 atomic regions from SNP 25873 to 26473 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,432 DEBUG Processing 64/214 atomic regions from SNP 19024 to 19625 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,579 DEBUG Processing 88/108 atomic regions from SNP 26173 to 26773 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,647 DEBUG Processing 65/214 atomic regions from SNP 19325 to 19926 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:09,794 DEBUG Processing 89/108 atomic regions from SNP 26473 to 27073 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:09,861 DEBUG Processing 66/214 atomic regions from SNP 19626 to 20227 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,006 DEBUG Processing 90/108 atomic regions from SNP 26773 to 27373 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,091 DEBUG Processing 67/214 atomic regions from SNP 19927 to 20528 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,218 DEBUG Processing 91/108 atomic regions from SNP 27073 to 27673 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,307 DEBUG Processing 68/214 atomic regions from SNP 20228 to 20829 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,428 DEBUG Processing 92/108 atomic regions from SNP 27373 to 27973 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,523 DEBUG Processing 69/214 atomic regions from SNP 20529 to 21130 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,637 DEBUG Processing 93/108 atomic regions from SNP 27673 to 28273 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,738 DEBUG Processing 70/214 atomic regions from SNP 20830 to 21431 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:10,845 DEBUG Processing 94/108 atomic regions from SNP 27973 to 28573 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:10,960 DEBUG Processing 71/214 atomic regions from SNP 21131 to 21732 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,051 DEBUG Processing 95/108 atomic regions from SNP 28273 to 28873 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,173 DEBUG Processing 72/214 atomic regions from SNP 21432 to 22033 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,257 DEBUG Processing 96/108 atomic regions from SNP 28573 to 29173 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,391 DEBUG Processing 73/214 atomic regions from SNP 21733 to 22334 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,463 DEBUG Processing 97/108 atomic regions from SNP 28873 to 29473 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,603 DEBUG Processing 74/214 atomic regions from SNP 22034 to 22635 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,669 DEBUG Processing 98/108 atomic regions from SNP 29173 to 29773 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:11,820 DEBUG Processing 75/214 atomic regions from SNP 22335 to 22936 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:11,879 DEBUG Processing 99/108 atomic regions from SNP 29473 to 30073 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,039 DEBUG Processing 76/214 atomic regions from SNP 22636 to 23237 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,085 DEBUG Processing 100/108 atomic regions from SNP 29773 to 30373 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,252 DEBUG Processing 77/214 atomic regions from SNP 22937 to 23538 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,289 DEBUG Processing 101/108 atomic regions from SNP 30073 to 30673 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,469 DEBUG Processing 78/214 atomic regions from SNP 23238 to 23839 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,493 DEBUG Processing 102/108 atomic regions from SNP 30373 to 30973 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,687 DEBUG Processing 79/214 atomic regions from SNP 23539 to 24140 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,700 DEBUG Processing 103/108 atomic regions from SNP 30673 to 31273 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:12,906 DEBUG Processing 80/214 atomic regions from SNP 23840 to 24441 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:12,909 DEBUG Processing 104/108 atomic regions from SNP 30973 to 31573 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,115 DEBUG Processing 105/108 atomic regions from SNP 31273 to 31873 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,124 DEBUG Processing 81/214 atomic regions from SNP 24141 to 24742 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,319 DEBUG Processing 106/108 atomic regions from SNP 31573 to 32173 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,337 DEBUG Processing 82/214 atomic regions from SNP 24442 to 25043 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,522 DEBUG Processing 107/108 atomic regions from SNP 31873 to 32473 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,550 DEBUG Processing 83/214 atomic regions from SNP 24743 to 25344 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,725 DEBUG Processing 108/108 atomic regions from SNP 32173 to 32773 for chrX (subchromosome 1 of 6). 2025-01-31 09:43:13,768 DEBUG Processing 84/214 atomic regions from SNP 25044 to 25645 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:13,828 DEBUG Unique SNPs positions in subchromosome 1: 32774 2025-01-31 09:43:13,885 DEBUG Subchromosome time: 28.795346513041295, subchromosome SNPs: 32774 2025-01-31 09:43:13,893 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:13,985 DEBUG Processing 85/214 atomic regions from SNP 25345 to 25946 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,195 DEBUG Processing 86/214 atomic regions from SNP 25646 to 26247 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,410 DEBUG Processing 87/214 atomic regions from SNP 25947 to 26548 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,624 DEBUG Processing 88/214 atomic regions from SNP 26248 to 26849 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:14,838 DEBUG Processing 89/214 atomic regions from SNP 26549 to 27150 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,055 DEBUG Processing 90/214 atomic regions from SNP 26850 to 27451 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,265 DEBUG Processing 91/214 atomic regions from SNP 27151 to 27752 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,475 DEBUG Processing 92/214 atomic regions from SNP 27452 to 28053 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,686 DEBUG Processing 93/214 atomic regions from SNP 27753 to 28354 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:15,900 DEBUG Processing 94/214 atomic regions from SNP 28054 to 28655 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,112 DEBUG Processing 95/214 atomic regions from SNP 28355 to 28956 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,324 DEBUG Processing 96/214 atomic regions from SNP 28656 to 29257 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,536 DEBUG Processing 97/214 atomic regions from SNP 28957 to 29558 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,754 DEBUG Processing 98/214 atomic regions from SNP 29258 to 29859 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:16,969 DEBUG Processing 99/214 atomic regions from SNP 29559 to 30160 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,107 DEBUG Segmenting atomic regions: 2025-01-31 09:43:17,184 DEBUG Processing 100/214 atomic regions from SNP 29860 to 30461 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,226 DEBUG Processing 1/883 atomic regions from SNP 0 to 601 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,397 DEBUG Processing 101/214 atomic regions from SNP 30161 to 30762 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,585 DEBUG Segmenting atomic regions: 2025-01-31 09:43:17,608 DEBUG Processing 102/214 atomic regions from SNP 30462 to 31063 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,691 DEBUG Processing 1/102 atomic regions from SNP 0 to 602 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:17,821 DEBUG Processing 103/214 atomic regions from SNP 30763 to 31364 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:17,888 DEBUG Processing 2/883 atomic regions from SNP 301 to 902 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:17,896 DEBUG Processing 2/102 atomic regions from SNP 302 to 904 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,042 DEBUG Processing 104/214 atomic regions from SNP 31064 to 31665 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,101 DEBUG Processing 3/102 atomic regions from SNP 604 to 1206 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,108 DEBUG Processing 3/883 atomic regions from SNP 602 to 1203 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,129 DEBUG Segmenting atomic regions: 2025-01-31 09:43:18,244 DEBUG Processing 1/850 atomic regions from SNP 0 to 601 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,265 DEBUG Processing 105/214 atomic regions from SNP 31365 to 31966 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,310 DEBUG Processing 4/102 atomic regions from SNP 906 to 1508 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,327 DEBUG Processing 4/883 atomic regions from SNP 903 to 1504 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,485 DEBUG Processing 106/214 atomic regions from SNP 31666 to 32267 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,521 DEBUG Processing 5/102 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,550 DEBUG Processing 5/883 atomic regions from SNP 1204 to 1805 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,700 DEBUG Processing 107/214 atomic regions from SNP 31967 to 32568 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,733 DEBUG Processing 6/102 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,770 DEBUG Processing 6/883 atomic regions from SNP 1505 to 2106 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:18,904 DEBUG Processing 2/850 atomic regions from SNP 301 to 902 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:18,918 DEBUG Processing 108/214 atomic regions from SNP 32268 to 32869 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:18,942 DEBUG Processing 7/102 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:18,989 DEBUG Processing 7/883 atomic regions from SNP 1806 to 2407 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,116 DEBUG Processing 3/850 atomic regions from SNP 602 to 1203 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,135 DEBUG Processing 109/214 atomic regions from SNP 32569 to 33170 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,154 DEBUG Processing 8/102 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,210 DEBUG Processing 8/883 atomic regions from SNP 2107 to 2708 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,328 DEBUG Processing 4/850 atomic regions from SNP 903 to 1504 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,351 DEBUG Processing 110/214 atomic regions from SNP 32870 to 33471 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,384 DEBUG Processing 9/102 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,430 DEBUG Processing 9/883 atomic regions from SNP 2408 to 3009 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,539 DEBUG Processing 5/850 atomic regions from SNP 1204 to 1805 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,567 DEBUG Processing 111/214 atomic regions from SNP 33171 to 33772 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,621 DEBUG Processing 10/102 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,650 DEBUG Processing 10/883 atomic regions from SNP 2709 to 3310 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,750 DEBUG Processing 6/850 atomic regions from SNP 1505 to 2106 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,782 DEBUG Processing 112/214 atomic regions from SNP 33472 to 34073 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:19,843 DEBUG Processing 11/102 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:19,870 DEBUG Processing 11/883 atomic regions from SNP 3010 to 3611 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:19,959 DEBUG Processing 7/850 atomic regions from SNP 1806 to 2407 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:19,994 DEBUG Processing 113/214 atomic regions from SNP 33773 to 34374 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,069 DEBUG Processing 12/102 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,093 DEBUG Processing 12/883 atomic regions from SNP 3311 to 3912 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,178 DEBUG Processing 8/850 atomic regions from SNP 2107 to 2708 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,216 DEBUG Processing 114/214 atomic regions from SNP 34074 to 34675 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,293 DEBUG Processing 13/102 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,316 DEBUG Processing 13/883 atomic regions from SNP 3612 to 4213 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,392 DEBUG Processing 9/850 atomic regions from SNP 2408 to 3009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,429 DEBUG Processing 115/214 atomic regions from SNP 34375 to 34976 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,511 DEBUG Processing 14/102 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,536 DEBUG Processing 14/883 atomic regions from SNP 3913 to 4514 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,603 DEBUG Processing 10/850 atomic regions from SNP 2709 to 3310 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,641 DEBUG Processing 116/214 atomic regions from SNP 34676 to 35277 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,726 DEBUG Processing 15/102 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,755 DEBUG Processing 15/883 atomic regions from SNP 4214 to 4815 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:20,818 DEBUG Processing 11/850 atomic regions from SNP 3010 to 3611 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:20,857 DEBUG Processing 117/214 atomic regions from SNP 34977 to 35578 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:20,935 DEBUG Processing 16/102 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:20,977 DEBUG Processing 16/883 atomic regions from SNP 4515 to 5116 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,032 DEBUG Processing 12/850 atomic regions from SNP 3311 to 3912 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,070 DEBUG Processing 118/214 atomic regions from SNP 35278 to 35879 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,157 DEBUG Processing 17/102 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,195 DEBUG Processing 17/883 atomic regions from SNP 4816 to 5417 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,245 DEBUG Processing 13/850 atomic regions from SNP 3612 to 4213 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,284 DEBUG Processing 119/214 atomic regions from SNP 35579 to 36180 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,383 DEBUG Processing 18/102 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,417 DEBUG Processing 18/883 atomic regions from SNP 5117 to 5718 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,463 DEBUG Processing 14/850 atomic regions from SNP 3913 to 4514 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,503 DEBUG Processing 120/214 atomic regions from SNP 35880 to 36481 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,593 DEBUG Processing 19/102 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,639 DEBUG Processing 19/883 atomic regions from SNP 5418 to 6019 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,678 DEBUG Processing 15/850 atomic regions from SNP 4214 to 4815 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,715 DEBUG Processing 121/214 atomic regions from SNP 36181 to 36782 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:21,801 DEBUG Processing 20/102 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:21,859 DEBUG Processing 20/883 atomic regions from SNP 5719 to 6320 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:21,892 DEBUG Processing 16/850 atomic regions from SNP 4515 to 5116 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:21,929 DEBUG Processing 122/214 atomic regions from SNP 36482 to 37083 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,005 DEBUG Processing 21/102 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,075 DEBUG Processing 21/883 atomic regions from SNP 6020 to 6621 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,103 DEBUG Processing 17/850 atomic regions from SNP 4816 to 5417 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,143 DEBUG Processing 123/214 atomic regions from SNP 36783 to 37384 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,212 DEBUG Processing 22/102 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,298 DEBUG Processing 22/883 atomic regions from SNP 6321 to 6922 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,318 DEBUG Processing 18/850 atomic regions from SNP 5117 to 5718 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,362 DEBUG Processing 124/214 atomic regions from SNP 37084 to 37685 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,419 DEBUG Processing 23/102 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,516 DEBUG Processing 23/883 atomic regions from SNP 6622 to 7223 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,530 DEBUG Processing 19/850 atomic regions from SNP 5418 to 6019 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,581 DEBUG Processing 125/214 atomic regions from SNP 37385 to 37986 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,627 DEBUG Processing 24/102 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,734 DEBUG Processing 24/883 atomic regions from SNP 6923 to 7524 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,741 DEBUG Processing 20/850 atomic regions from SNP 5719 to 6320 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:22,797 DEBUG Processing 126/214 atomic regions from SNP 37686 to 38287 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:22,832 DEBUG Processing 25/102 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:22,952 DEBUG Processing 25/883 atomic regions from SNP 7224 to 7825 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:22,953 DEBUG Processing 21/850 atomic regions from SNP 6020 to 6621 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,013 DEBUG Processing 127/214 atomic regions from SNP 37987 to 38588 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,037 DEBUG Processing 26/102 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,165 DEBUG Processing 22/850 atomic regions from SNP 6321 to 6922 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,171 DEBUG Processing 26/883 atomic regions from SNP 7525 to 8126 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,229 DEBUG Processing 128/214 atomic regions from SNP 38288 to 38889 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,243 DEBUG Processing 27/102 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,381 DEBUG Processing 23/850 atomic regions from SNP 6622 to 7223 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,389 DEBUG Processing 27/883 atomic regions from SNP 7826 to 8427 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,448 DEBUG Processing 129/214 atomic regions from SNP 38589 to 39190 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,452 DEBUG Processing 28/102 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,591 DEBUG Processing 24/850 atomic regions from SNP 6923 to 7524 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,609 DEBUG Processing 28/883 atomic regions from SNP 8127 to 8728 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,661 DEBUG Processing 29/102 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,666 DEBUG Processing 130/214 atomic regions from SNP 38890 to 39491 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:23,806 DEBUG Processing 25/850 atomic regions from SNP 7224 to 7825 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:23,826 DEBUG Processing 29/883 atomic regions from SNP 8428 to 9029 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:23,869 DEBUG Processing 30/102 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:23,881 DEBUG Processing 131/214 atomic regions from SNP 39191 to 39792 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,018 DEBUG Processing 26/850 atomic regions from SNP 7525 to 8126 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,047 DEBUG Processing 30/883 atomic regions from SNP 8729 to 9330 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,077 DEBUG Processing 31/102 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,096 DEBUG Processing 132/214 atomic regions from SNP 39492 to 40093 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,230 DEBUG Processing 27/850 atomic regions from SNP 7826 to 8427 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,267 DEBUG Processing 31/883 atomic regions from SNP 9030 to 9631 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,286 DEBUG Processing 32/102 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,312 DEBUG Processing 133/214 atomic regions from SNP 39793 to 40394 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,444 DEBUG Processing 28/850 atomic regions from SNP 8127 to 8728 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,502 DEBUG Processing 33/102 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,520 DEBUG Processing 32/883 atomic regions from SNP 9331 to 9932 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,534 DEBUG Processing 134/214 atomic regions from SNP 40094 to 40695 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,660 DEBUG Processing 29/850 atomic regions from SNP 8428 to 9029 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,716 DEBUG Processing 34/102 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,751 DEBUG Processing 135/214 atomic regions from SNP 40395 to 40996 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,753 DEBUG Processing 33/883 atomic regions from SNP 9632 to 10233 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:24,870 DEBUG Processing 30/850 atomic regions from SNP 8729 to 9330 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:24,925 DEBUG Processing 35/102 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:24,968 DEBUG Processing 136/214 atomic regions from SNP 40696 to 41297 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:24,973 DEBUG Processing 34/883 atomic regions from SNP 9933 to 10534 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,079 DEBUG Processing 31/850 atomic regions from SNP 9030 to 9631 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,139 DEBUG Processing 36/102 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:25,184 DEBUG Processing 137/214 atomic regions from SNP 40997 to 41598 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,189 DEBUG Processing 35/883 atomic regions from SNP 10234 to 10835 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,288 DEBUG Processing 32/850 atomic regions from SNP 9331 to 9932 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,346 DEBUG Processing 37/102 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:25,400 DEBUG Processing 138/214 atomic regions from SNP 41298 to 41899 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,410 DEBUG Processing 36/883 atomic regions from SNP 10535 to 11136 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,496 DEBUG Processing 33/850 atomic regions from SNP 9632 to 10233 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,557 DEBUG Processing 38/102 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:25,616 DEBUG Processing 139/214 atomic regions from SNP 41599 to 42200 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,627 DEBUG Processing 37/883 atomic regions from SNP 10836 to 11437 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,704 DEBUG Processing 34/850 atomic regions from SNP 9933 to 10534 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,764 DEBUG Processing 39/102 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:25,834 DEBUG Processing 140/214 atomic regions from SNP 41900 to 42501 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:25,850 DEBUG Processing 38/883 atomic regions from SNP 11137 to 11738 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:25,920 DEBUG Processing 35/850 atomic regions from SNP 10234 to 10835 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:25,981 DEBUG Processing 40/102 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,061 DEBUG Processing 141/214 atomic regions from SNP 42201 to 42802 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,091 DEBUG Processing 39/883 atomic regions from SNP 11438 to 12039 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,139 DEBUG Processing 36/850 atomic regions from SNP 10535 to 11136 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,194 DEBUG Processing 41/102 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,279 DEBUG Processing 142/214 atomic regions from SNP 42502 to 43103 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,327 DEBUG Processing 40/883 atomic regions from SNP 11739 to 12340 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,349 DEBUG Processing 37/850 atomic regions from SNP 10836 to 11437 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,400 DEBUG Processing 42/102 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,495 DEBUG Processing 143/214 atomic regions from SNP 42803 to 43404 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,555 DEBUG Processing 41/883 atomic regions from SNP 12040 to 12641 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,563 DEBUG Processing 38/850 atomic regions from SNP 11137 to 11738 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,606 DEBUG Processing 43/102 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,711 DEBUG Processing 144/214 atomic regions from SNP 43104 to 43705 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,774 DEBUG Processing 42/883 atomic regions from SNP 12341 to 12942 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:26,775 DEBUG Processing 39/850 atomic regions from SNP 11438 to 12039 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:26,812 DEBUG Processing 44/102 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:26,946 DEBUG Processing 145/214 atomic regions from SNP 43405 to 44006 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:26,991 DEBUG Processing 40/850 atomic regions from SNP 11739 to 12340 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,009 DEBUG Processing 43/883 atomic regions from SNP 12642 to 13243 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,019 DEBUG Processing 45/102 atomic regions from SNP 13288 to 13890 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,161 DEBUG Processing 146/214 atomic regions from SNP 43706 to 44307 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,203 DEBUG Processing 41/850 atomic regions from SNP 12040 to 12641 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,224 DEBUG Processing 46/102 atomic regions from SNP 13590 to 14192 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,228 DEBUG Processing 44/883 atomic regions from SNP 12943 to 13544 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,403 DEBUG Processing 147/214 atomic regions from SNP 44007 to 44608 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,422 DEBUG Processing 42/850 atomic regions from SNP 12341 to 12942 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,438 DEBUG Processing 47/102 atomic regions from SNP 13892 to 14494 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,469 DEBUG Processing 45/883 atomic regions from SNP 13244 to 13845 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,623 DEBUG Processing 148/214 atomic regions from SNP 44308 to 44909 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,637 DEBUG Processing 43/850 atomic regions from SNP 12642 to 13243 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,648 DEBUG Processing 48/102 atomic regions from SNP 14194 to 14796 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,690 DEBUG Processing 46/883 atomic regions from SNP 13545 to 14146 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:27,849 DEBUG Processing 149/214 atomic regions from SNP 44609 to 45210 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:27,858 DEBUG Processing 44/850 atomic regions from SNP 12943 to 13544 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:27,868 DEBUG Processing 49/102 atomic regions from SNP 14496 to 15098 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:27,915 DEBUG Processing 47/883 atomic regions from SNP 13846 to 14447 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,051 DEBUG Segmenting atomic regions: 2025-01-31 09:43:28,076 DEBUG Processing 45/850 atomic regions from SNP 13244 to 13845 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,077 DEBUG Processing 150/214 atomic regions from SNP 44910 to 45511 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,088 DEBUG Processing 50/102 atomic regions from SNP 14798 to 15400 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,150 DEBUG Processing 48/883 atomic regions from SNP 14147 to 14748 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,203 DEBUG Processing 1/1016 atomic regions from SNP 0 to 601 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,312 DEBUG Processing 46/850 atomic regions from SNP 13545 to 14146 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,313 DEBUG Processing 151/214 atomic regions from SNP 45211 to 45812 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,317 DEBUG Processing 51/102 atomic regions from SNP 15100 to 15702 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,385 DEBUG Processing 49/883 atomic regions from SNP 14448 to 15049 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,538 DEBUG Processing 52/102 atomic regions from SNP 15402 to 16004 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,540 DEBUG Processing 47/850 atomic regions from SNP 13846 to 14447 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,544 DEBUG Processing 152/214 atomic regions from SNP 45512 to 46113 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,618 DEBUG Processing 50/883 atomic regions from SNP 14749 to 15350 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,758 DEBUG Processing 53/102 atomic regions from SNP 15704 to 16306 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,763 DEBUG Processing 48/850 atomic regions from SNP 14147 to 14748 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,774 DEBUG Processing 153/214 atomic regions from SNP 45813 to 46414 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:28,849 DEBUG Processing 51/883 atomic regions from SNP 15050 to 15651 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:28,975 DEBUG Processing 54/102 atomic regions from SNP 16006 to 16608 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:28,983 DEBUG Processing 49/850 atomic regions from SNP 14448 to 15049 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:28,993 DEBUG Processing 2/1016 atomic regions from SNP 301 to 902 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:28,999 DEBUG Processing 154/214 atomic regions from SNP 46114 to 46715 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,078 DEBUG Processing 52/883 atomic regions from SNP 15351 to 15952 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,195 DEBUG Processing 55/102 atomic regions from SNP 16308 to 16910 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,209 DEBUG Processing 50/850 atomic regions from SNP 14749 to 15350 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,231 DEBUG Processing 155/214 atomic regions from SNP 46415 to 47016 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,266 DEBUG Processing 3/1016 atomic regions from SNP 602 to 1203 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,311 DEBUG Processing 53/883 atomic regions from SNP 15652 to 16253 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,421 DEBUG Processing 56/102 atomic regions from SNP 16610 to 17212 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,444 DEBUG Processing 51/850 atomic regions from SNP 15050 to 15651 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,471 DEBUG Processing 156/214 atomic regions from SNP 46716 to 47317 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,535 DEBUG Processing 4/1016 atomic regions from SNP 903 to 1504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,547 DEBUG Processing 54/883 atomic regions from SNP 15953 to 16554 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,658 DEBUG Processing 57/102 atomic regions from SNP 16912 to 17514 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,692 DEBUG Processing 52/850 atomic regions from SNP 15351 to 15952 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,728 DEBUG Processing 157/214 atomic regions from SNP 47017 to 47618 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:29,804 DEBUG Processing 5/1016 atomic regions from SNP 1204 to 1805 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:29,808 DEBUG Processing 55/883 atomic regions from SNP 16254 to 16855 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:29,917 DEBUG Processing 58/102 atomic regions from SNP 17214 to 17816 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:29,960 DEBUG Processing 53/850 atomic regions from SNP 15652 to 16253 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:29,997 DEBUG Processing 158/214 atomic regions from SNP 47318 to 47919 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,073 DEBUG Processing 56/883 atomic regions from SNP 16555 to 17156 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,081 DEBUG Processing 6/1016 atomic regions from SNP 1505 to 2106 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,166 DEBUG Processing 59/102 atomic regions from SNP 17516 to 18118 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:30,220 DEBUG Processing 54/850 atomic regions from SNP 15953 to 16554 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,266 DEBUG Processing 159/214 atomic regions from SNP 47619 to 48220 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,347 DEBUG Processing 57/883 atomic regions from SNP 16856 to 17457 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,374 DEBUG Processing 7/1016 atomic regions from SNP 1806 to 2407 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,421 DEBUG Processing 60/102 atomic regions from SNP 17818 to 18420 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:30,482 DEBUG Processing 55/850 atomic regions from SNP 16254 to 16855 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,532 DEBUG Processing 160/214 atomic regions from SNP 47920 to 48521 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,608 DEBUG Processing 58/883 atomic regions from SNP 17157 to 17758 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,639 DEBUG Processing 8/1016 atomic regions from SNP 2107 to 2708 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,665 DEBUG Processing 61/102 atomic regions from SNP 18120 to 18722 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:30,737 DEBUG Processing 56/850 atomic regions from SNP 16555 to 17156 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:30,790 DEBUG Processing 161/214 atomic regions from SNP 48221 to 48822 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:30,867 DEBUG Processing 59/883 atomic regions from SNP 17458 to 18059 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:30,906 DEBUG Processing 9/1016 atomic regions from SNP 2408 to 3009 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:30,910 DEBUG Processing 62/102 atomic regions from SNP 18422 to 19024 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:30,978 DEBUG Processing 57/850 atomic regions from SNP 16856 to 17457 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,029 DEBUG Processing 162/214 atomic regions from SNP 48522 to 49123 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,102 DEBUG Processing 60/883 atomic regions from SNP 17759 to 18360 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,132 DEBUG Processing 63/102 atomic regions from SNP 18724 to 19326 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:31,158 DEBUG Processing 10/1016 atomic regions from SNP 2709 to 3310 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,205 DEBUG Processing 58/850 atomic regions from SNP 17157 to 17758 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,259 DEBUG Processing 163/214 atomic regions from SNP 48823 to 49424 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,334 DEBUG Processing 61/883 atomic regions from SNP 18060 to 18661 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,355 DEBUG Processing 64/102 atomic regions from SNP 19026 to 19628 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:31,410 DEBUG Processing 11/1016 atomic regions from SNP 3010 to 3611 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,435 DEBUG Processing 59/850 atomic regions from SNP 17458 to 18059 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,490 DEBUG Processing 164/214 atomic regions from SNP 49124 to 49725 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,566 DEBUG Processing 62/883 atomic regions from SNP 18361 to 18962 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,574 DEBUG Processing 65/102 atomic regions from SNP 19328 to 19930 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:31,656 DEBUG Processing 60/850 atomic regions from SNP 17759 to 18360 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,662 DEBUG Processing 12/1016 atomic regions from SNP 3311 to 3912 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,717 DEBUG Processing 165/214 atomic regions from SNP 49425 to 50026 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:31,788 DEBUG Processing 66/102 atomic regions from SNP 19630 to 20232 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:31,793 DEBUG Processing 63/883 atomic regions from SNP 18662 to 19263 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:31,877 DEBUG Processing 61/850 atomic regions from SNP 18060 to 18661 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:31,913 DEBUG Processing 13/1016 atomic regions from SNP 3612 to 4213 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:31,960 DEBUG Processing 166/214 atomic regions from SNP 49726 to 50327 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,000 DEBUG Processing 67/102 atomic regions from SNP 19932 to 20534 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,037 DEBUG Processing 64/883 atomic regions from SNP 18963 to 19564 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,095 DEBUG Processing 62/850 atomic regions from SNP 18361 to 18962 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,165 DEBUG Processing 14/1016 atomic regions from SNP 3913 to 4514 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,205 DEBUG Processing 167/214 atomic regions from SNP 50027 to 50628 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,217 DEBUG Processing 68/102 atomic regions from SNP 20234 to 20836 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,291 DEBUG Processing 65/883 atomic regions from SNP 19264 to 19865 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,317 DEBUG Processing 63/850 atomic regions from SNP 18662 to 19263 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,414 DEBUG Processing 15/1016 atomic regions from SNP 4214 to 4815 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,440 DEBUG Processing 69/102 atomic regions from SNP 20536 to 21138 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,459 DEBUG Processing 168/214 atomic regions from SNP 50328 to 50929 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,520 DEBUG Processing 66/883 atomic regions from SNP 19565 to 20166 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,540 DEBUG Processing 64/850 atomic regions from SNP 18963 to 19564 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,566 DEBUG Segmenting atomic regions: 2025-01-31 09:43:32,664 DEBUG Processing 16/1016 atomic regions from SNP 4515 to 5116 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,680 DEBUG Processing 70/102 atomic regions from SNP 20838 to 21440 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,699 DEBUG Processing 169/214 atomic regions from SNP 50629 to 51230 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,722 DEBUG Processing 1/1127 atomic regions from SNP 0 to 601 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:32,754 DEBUG Processing 67/883 atomic regions from SNP 19866 to 20467 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,767 DEBUG Processing 65/850 atomic regions from SNP 19264 to 19865 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:32,916 DEBUG Processing 17/1016 atomic regions from SNP 4816 to 5417 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:32,926 DEBUG Processing 71/102 atomic regions from SNP 21140 to 21742 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:32,933 DEBUG Processing 170/214 atomic regions from SNP 50930 to 51531 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:32,994 DEBUG Processing 68/883 atomic regions from SNP 20167 to 20768 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:32,999 DEBUG Processing 66/850 atomic regions from SNP 19565 to 20166 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,165 DEBUG Processing 72/102 atomic regions from SNP 21442 to 22044 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,171 DEBUG Processing 171/214 atomic regions from SNP 51231 to 51832 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,179 DEBUG Processing 18/1016 atomic regions from SNP 5117 to 5718 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,230 DEBUG Processing 67/850 atomic regions from SNP 19866 to 20467 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,232 DEBUG Processing 69/883 atomic regions from SNP 20468 to 21069 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,398 DEBUG Processing 73/102 atomic regions from SNP 21744 to 22346 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,413 DEBUG Processing 172/214 atomic regions from SNP 51532 to 52133 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,465 DEBUG Processing 19/1016 atomic regions from SNP 5418 to 6019 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,471 DEBUG Processing 68/850 atomic regions from SNP 20167 to 20768 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,473 DEBUG Processing 70/883 atomic regions from SNP 20769 to 21370 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,528 DEBUG Processing 2/1127 atomic regions from SNP 301 to 902 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,628 DEBUG Processing 74/102 atomic regions from SNP 22046 to 22648 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,657 DEBUG Processing 173/214 atomic regions from SNP 51833 to 52434 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,715 DEBUG Processing 69/850 atomic regions from SNP 20468 to 21069 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,727 DEBUG Processing 71/883 atomic regions from SNP 21070 to 21671 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:33,766 DEBUG Processing 20/1016 atomic regions from SNP 5719 to 6320 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:33,818 DEBUG Processing 3/1127 atomic regions from SNP 602 to 1203 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:33,873 DEBUG Processing 75/102 atomic regions from SNP 22348 to 22950 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:33,907 DEBUG Processing 174/214 atomic regions from SNP 52134 to 52735 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:33,958 DEBUG Processing 70/850 atomic regions from SNP 20769 to 21370 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:33,973 DEBUG Processing 72/883 atomic regions from SNP 21371 to 21972 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,049 DEBUG Processing 21/1016 atomic regions from SNP 6020 to 6621 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,097 DEBUG Processing 4/1127 atomic regions from SNP 903 to 1504 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,106 DEBUG Processing 76/102 atomic regions from SNP 22650 to 23252 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,156 DEBUG Processing 175/214 atomic regions from SNP 52435 to 53036 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,204 DEBUG Processing 71/850 atomic regions from SNP 21070 to 21671 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,223 DEBUG Processing 73/883 atomic regions from SNP 21672 to 22273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,327 DEBUG Processing 22/1016 atomic regions from SNP 6321 to 6922 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,344 DEBUG Processing 77/102 atomic regions from SNP 22952 to 23554 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,383 DEBUG Processing 5/1127 atomic regions from SNP 1204 to 1805 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,401 DEBUG Processing 176/214 atomic regions from SNP 52736 to 53337 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,440 DEBUG Processing 72/850 atomic regions from SNP 21371 to 21972 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,464 DEBUG Processing 74/883 atomic regions from SNP 21973 to 22574 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,580 DEBUG Processing 78/102 atomic regions from SNP 23254 to 23856 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,599 DEBUG Processing 23/1016 atomic regions from SNP 6622 to 7223 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,653 DEBUG Processing 177/214 atomic regions from SNP 53037 to 53638 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,669 DEBUG Processing 6/1127 atomic regions from SNP 1505 to 2106 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,683 DEBUG Processing 73/850 atomic regions from SNP 21672 to 22273 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,709 DEBUG Processing 75/883 atomic regions from SNP 22274 to 22875 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:34,814 DEBUG Processing 79/102 atomic regions from SNP 23556 to 24158 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:34,869 DEBUG Processing 24/1016 atomic regions from SNP 6923 to 7524 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:34,907 DEBUG Processing 178/214 atomic regions from SNP 53338 to 53939 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:34,919 DEBUG Processing 74/850 atomic regions from SNP 21973 to 22574 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:34,942 DEBUG Processing 7/1127 atomic regions from SNP 1806 to 2407 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:34,952 DEBUG Processing 76/883 atomic regions from SNP 22575 to 23176 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,040 DEBUG Processing 80/102 atomic regions from SNP 23858 to 24460 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,132 DEBUG Processing 25/1016 atomic regions from SNP 7224 to 7825 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,147 DEBUG Processing 179/214 atomic regions from SNP 53639 to 54240 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,155 DEBUG Processing 75/850 atomic regions from SNP 22274 to 22875 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,195 DEBUG Processing 77/883 atomic regions from SNP 22876 to 23477 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,217 DEBUG Processing 8/1127 atomic regions from SNP 2107 to 2708 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,267 DEBUG Processing 81/102 atomic regions from SNP 24160 to 24762 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,388 DEBUG Processing 180/214 atomic regions from SNP 53940 to 54541 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,393 DEBUG Processing 76/850 atomic regions from SNP 22575 to 23176 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,395 DEBUG Processing 26/1016 atomic regions from SNP 7525 to 8126 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,442 DEBUG Processing 78/883 atomic regions from SNP 23177 to 23778 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,499 DEBUG Processing 9/1127 atomic regions from SNP 2408 to 3009 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,504 DEBUG Processing 82/102 atomic regions from SNP 24462 to 25064 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,630 DEBUG Processing 181/214 atomic regions from SNP 54241 to 54842 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,631 DEBUG Processing 77/850 atomic regions from SNP 22876 to 23477 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,650 DEBUG Processing 27/1016 atomic regions from SNP 7826 to 8427 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,688 DEBUG Processing 79/883 atomic regions from SNP 23478 to 24079 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:35,771 DEBUG Processing 83/102 atomic regions from SNP 24764 to 25365 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:35,777 DEBUG Processing 10/1127 atomic regions from SNP 2709 to 3310 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:35,864 DEBUG Processing 78/850 atomic regions from SNP 23177 to 23778 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:35,870 DEBUG Processing 182/214 atomic regions from SNP 54542 to 55143 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:35,906 DEBUG Processing 28/1016 atomic regions from SNP 8127 to 8728 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:35,926 DEBUG Processing 80/883 atomic regions from SNP 23779 to 24380 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,009 DEBUG Processing 84/102 atomic regions from SNP 25065 to 25666 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,049 DEBUG Processing 11/1127 atomic regions from SNP 3010 to 3611 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,101 DEBUG Processing 79/850 atomic regions from SNP 23478 to 24079 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,111 DEBUG Processing 183/214 atomic regions from SNP 54843 to 55444 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,161 DEBUG Processing 29/1016 atomic regions from SNP 8428 to 9029 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,169 DEBUG Processing 81/883 atomic regions from SNP 24080 to 24681 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,247 DEBUG Processing 85/102 atomic regions from SNP 25366 to 25967 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,326 DEBUG Processing 12/1127 atomic regions from SNP 3311 to 3912 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,346 DEBUG Processing 80/850 atomic regions from SNP 23779 to 24380 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,362 DEBUG Processing 184/214 atomic regions from SNP 55144 to 55745 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,417 DEBUG Processing 30/1016 atomic regions from SNP 8729 to 9330 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,417 DEBUG Processing 82/883 atomic regions from SNP 24381 to 24982 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,488 DEBUG Processing 86/102 atomic regions from SNP 25667 to 26268 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,584 DEBUG Processing 81/850 atomic regions from SNP 24080 to 24681 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,594 DEBUG Processing 13/1127 atomic regions from SNP 3612 to 4213 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,607 DEBUG Processing 185/214 atomic regions from SNP 55445 to 56046 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,669 DEBUG Processing 83/883 atomic regions from SNP 24682 to 25283 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,687 DEBUG Processing 31/1016 atomic regions from SNP 9030 to 9631 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:36,734 DEBUG Processing 87/102 atomic regions from SNP 25968 to 26569 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:36,849 DEBUG Processing 82/850 atomic regions from SNP 24381 to 24982 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:36,888 DEBUG Processing 186/214 atomic regions from SNP 55746 to 56347 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:36,916 DEBUG Processing 14/1127 atomic regions from SNP 3913 to 4514 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:36,953 DEBUG Processing 84/883 atomic regions from SNP 24983 to 25584 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:36,968 DEBUG Processing 32/1016 atomic regions from SNP 9331 to 9932 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,007 DEBUG Processing 88/102 atomic regions from SNP 26269 to 26870 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,110 DEBUG Processing 83/850 atomic regions from SNP 24682 to 25283 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,154 DEBUG Processing 187/214 atomic regions from SNP 56047 to 56648 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,194 DEBUG Processing 15/1127 atomic regions from SNP 4214 to 4815 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,224 DEBUG Processing 85/883 atomic regions from SNP 25284 to 25885 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,252 DEBUG Processing 33/1016 atomic regions from SNP 9632 to 10233 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,301 DEBUG Processing 89/102 atomic regions from SNP 26570 to 27171 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,428 DEBUG Processing 84/850 atomic regions from SNP 24983 to 25584 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,480 DEBUG Processing 188/214 atomic regions from SNP 56348 to 56949 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,553 DEBUG Processing 16/1127 atomic regions from SNP 4515 to 5116 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,615 DEBUG Processing 86/883 atomic regions from SNP 25585 to 26186 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,624 DEBUG Processing 34/1016 atomic regions from SNP 9933 to 10534 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:37,637 DEBUG Processing 90/102 atomic regions from SNP 26871 to 27472 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,741 DEBUG Processing 85/850 atomic regions from SNP 25284 to 25885 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:37,781 DEBUG Processing 189/214 atomic regions from SNP 56649 to 57250 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:37,878 DEBUG Processing 17/1127 atomic regions from SNP 4816 to 5417 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:37,962 DEBUG Processing 87/883 atomic regions from SNP 25886 to 26487 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:37,979 DEBUG Processing 91/102 atomic regions from SNP 27172 to 27773 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:37,990 DEBUG Processing 35/1016 atomic regions from SNP 10234 to 10835 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,082 DEBUG Processing 86/850 atomic regions from SNP 25585 to 26186 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,126 DEBUG Processing 190/214 atomic regions from SNP 56950 to 57551 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,265 DEBUG Processing 18/1127 atomic regions from SNP 5117 to 5718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,286 DEBUG Processing 88/883 atomic regions from SNP 26187 to 26788 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,304 DEBUG Processing 92/102 atomic regions from SNP 27473 to 28074 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,331 DEBUG Processing 36/1016 atomic regions from SNP 10535 to 11136 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,376 DEBUG Processing 87/850 atomic regions from SNP 25886 to 26487 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,409 DEBUG Processing 191/214 atomic regions from SNP 57251 to 57852 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:38,632 DEBUG Processing 19/1127 atomic regions from SNP 5418 to 6018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:38,637 DEBUG Processing 89/883 atomic regions from SNP 26488 to 27089 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:38,673 DEBUG Processing 93/102 atomic regions from SNP 27774 to 28375 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:38,697 DEBUG Processing 37/1016 atomic regions from SNP 10836 to 11437 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:38,698 DEBUG Processing 88/850 atomic regions from SNP 26187 to 26788 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:38,738 DEBUG Processing 192/214 atomic regions from SNP 57552 to 58153 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,017 DEBUG Processing 90/883 atomic regions from SNP 26789 to 27390 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,022 DEBUG Processing 94/102 atomic regions from SNP 28075 to 28676 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,023 DEBUG Processing 20/1127 atomic regions from SNP 5718 to 6318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,059 DEBUG Processing 89/850 atomic regions from SNP 26488 to 27089 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,084 DEBUG Processing 38/1016 atomic regions from SNP 11137 to 11738 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,103 DEBUG Processing 193/214 atomic regions from SNP 57853 to 58454 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,344 DEBUG Processing 95/102 atomic regions from SNP 28376 to 28977 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,368 DEBUG Processing 91/883 atomic regions from SNP 27090 to 27691 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,385 DEBUG Processing 21/1127 atomic regions from SNP 6018 to 6618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,388 DEBUG Processing 90/850 atomic regions from SNP 26789 to 27390 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,434 DEBUG Processing 194/214 atomic regions from SNP 58154 to 58755 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,435 DEBUG Processing 39/1016 atomic regions from SNP 11438 to 12039 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:39,686 DEBUG Processing 96/102 atomic regions from SNP 28677 to 29278 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:39,782 DEBUG Processing 91/850 atomic regions from SNP 27090 to 27691 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:39,786 DEBUG Processing 92/883 atomic regions from SNP 27391 to 27992 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:39,831 DEBUG Processing 22/1127 atomic regions from SNP 6318 to 6918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:39,853 DEBUG Processing 195/214 atomic regions from SNP 58455 to 59056 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:39,869 DEBUG Processing 40/1016 atomic regions from SNP 11739 to 12340 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,057 DEBUG Processing 97/102 atomic regions from SNP 28978 to 29579 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,180 DEBUG Processing 93/883 atomic regions from SNP 27692 to 28293 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,185 DEBUG Processing 92/850 atomic regions from SNP 27391 to 27992 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,252 DEBUG Processing 23/1127 atomic regions from SNP 6618 to 7218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,263 DEBUG Processing 196/214 atomic regions from SNP 58756 to 59357 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,274 DEBUG Processing 41/1016 atomic regions from SNP 12040 to 12641 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,443 DEBUG Processing 98/102 atomic regions from SNP 29279 to 29880 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,596 DEBUG Processing 94/883 atomic regions from SNP 27993 to 28594 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,604 DEBUG Processing 93/850 atomic regions from SNP 27692 to 28293 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:40,669 DEBUG Processing 197/214 atomic regions from SNP 59057 to 59658 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:40,692 DEBUG Processing 24/1127 atomic regions from SNP 6918 to 7518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:40,693 DEBUG Processing 42/1016 atomic regions from SNP 12341 to 12942 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:40,758 DEBUG Processing 99/102 atomic regions from SNP 29580 to 30181 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:40,908 DEBUG Processing 95/883 atomic regions from SNP 28294 to 28895 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:40,917 DEBUG Processing 94/850 atomic regions from SNP 27993 to 28594 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,062 DEBUG Processing 198/214 atomic regions from SNP 59358 to 59959 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,149 DEBUG Processing 43/1016 atomic regions from SNP 12642 to 13243 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,162 DEBUG Processing 25/1127 atomic regions from SNP 7218 to 7818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,192 DEBUG Processing 100/102 atomic regions from SNP 29881 to 30482 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,281 DEBUG Processing 96/883 atomic regions from SNP 28595 to 29196 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,283 DEBUG Processing 95/850 atomic regions from SNP 28294 to 28895 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,444 DEBUG Processing 199/214 atomic regions from SNP 59659 to 60260 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,555 DEBUG Processing 44/1016 atomic regions from SNP 12943 to 13544 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:41,565 DEBUG Processing 101/102 atomic regions from SNP 30182 to 30783 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:41,570 DEBUG Processing 26/1127 atomic regions from SNP 7518 to 8118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:41,641 DEBUG Processing 97/883 atomic regions from SNP 28896 to 29497 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:41,672 DEBUG Processing 96/850 atomic regions from SNP 28595 to 29196 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:41,756 DEBUG Processing 200/214 atomic regions from SNP 59960 to 60561 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:41,993 DEBUG Processing 45/1016 atomic regions from SNP 13244 to 13845 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,008 DEBUG Processing 102/102 atomic regions from SNP 30483 to 31084 for chrX (subchromosome 4 of 6). 2025-01-31 09:43:42,031 DEBUG Processing 27/1127 atomic regions from SNP 7818 to 8418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,065 DEBUG Processing 98/883 atomic regions from SNP 29197 to 29798 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,124 DEBUG Processing 97/850 atomic regions from SNP 28896 to 29497 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,165 DEBUG Processing 201/214 atomic regions from SNP 60261 to 60862 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,266 DEBUG Unique SNPs positions in subchromosome 4: 31085 2025-01-31 09:43:42,318 DEBUG Subchromosome time: 28.4249622450443, subchromosome SNPs: 31085 2025-01-31 09:43:42,348 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:42,394 DEBUG Processing 46/1016 atomic regions from SNP 13545 to 14146 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,432 DEBUG Processing 99/883 atomic regions from SNP 29498 to 30099 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,453 DEBUG Processing 98/850 atomic regions from SNP 29197 to 29798 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,467 DEBUG Processing 28/1127 atomic regions from SNP 8118 to 8718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,525 DEBUG Processing 202/214 atomic regions from SNP 60562 to 61163 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:42,733 DEBUG Processing 47/1016 atomic regions from SNP 13846 to 14447 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:42,762 DEBUG Processing 99/850 atomic regions from SNP 29498 to 30099 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:42,762 DEBUG Processing 100/883 atomic regions from SNP 29799 to 30400 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:42,844 DEBUG Processing 29/1127 atomic regions from SNP 8418 to 9018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:42,868 DEBUG Processing 203/214 atomic regions from SNP 60863 to 61464 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,082 DEBUG Processing 101/883 atomic regions from SNP 30100 to 30701 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,085 DEBUG Processing 100/850 atomic regions from SNP 29799 to 30400 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,101 DEBUG Processing 48/1016 atomic regions from SNP 14147 to 14748 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,180 DEBUG Processing 204/214 atomic regions from SNP 61164 to 61765 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,195 DEBUG Processing 30/1127 atomic regions from SNP 8718 to 9318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,357 DEBUG Processing 101/850 atomic regions from SNP 30100 to 30701 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,365 DEBUG Processing 102/883 atomic regions from SNP 30401 to 31002 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,410 DEBUG Processing 49/1016 atomic regions from SNP 14448 to 15049 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,465 DEBUG Processing 205/214 atomic regions from SNP 61465 to 62066 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,554 DEBUG Processing 31/1127 atomic regions from SNP 9018 to 9618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,644 DEBUG Processing 102/850 atomic regions from SNP 30401 to 31002 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,653 DEBUG Processing 103/883 atomic regions from SNP 30702 to 31303 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:43,730 DEBUG Processing 50/1016 atomic regions from SNP 14749 to 15350 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:43,784 DEBUG Processing 206/214 atomic regions from SNP 61766 to 62367 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:43,904 DEBUG Processing 32/1127 atomic regions from SNP 9318 to 9918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:43,921 DEBUG Processing 103/850 atomic regions from SNP 30702 to 31303 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:43,949 DEBUG Processing 104/883 atomic regions from SNP 31003 to 31604 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,027 DEBUG Processing 51/1016 atomic regions from SNP 15050 to 15651 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,089 DEBUG Processing 207/214 atomic regions from SNP 62067 to 62668 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,171 DEBUG Processing 104/850 atomic regions from SNP 31003 to 31604 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,202 DEBUG Processing 33/1127 atomic regions from SNP 9618 to 10218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,211 DEBUG Processing 105/883 atomic regions from SNP 31304 to 31905 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,313 DEBUG Processing 52/1016 atomic regions from SNP 15351 to 15952 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,345 DEBUG Processing 208/214 atomic regions from SNP 62368 to 62969 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,424 DEBUG Processing 105/850 atomic regions from SNP 31304 to 31905 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,459 DEBUG Processing 106/883 atomic regions from SNP 31605 to 32206 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,480 DEBUG Processing 34/1127 atomic regions from SNP 9918 to 10518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,602 DEBUG Processing 53/1016 atomic regions from SNP 15652 to 16253 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,624 DEBUG Processing 209/214 atomic regions from SNP 62669 to 63270 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:44,730 DEBUG Processing 106/850 atomic regions from SNP 31605 to 32206 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:44,758 DEBUG Processing 107/883 atomic regions from SNP 31906 to 32507 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:44,831 DEBUG Processing 35/1127 atomic regions from SNP 10218 to 10818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:44,926 DEBUG Processing 54/1016 atomic regions from SNP 15953 to 16554 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:44,995 DEBUG Processing 210/214 atomic regions from SNP 62970 to 63571 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,052 DEBUG Processing 107/850 atomic regions from SNP 31906 to 32507 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,062 DEBUG Processing 108/883 atomic regions from SNP 32207 to 32808 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,134 DEBUG Processing 36/1127 atomic regions from SNP 10518 to 11118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,230 DEBUG Processing 55/1016 atomic regions from SNP 16254 to 16855 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,287 DEBUG Processing 211/214 atomic regions from SNP 63271 to 63872 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,336 DEBUG Processing 109/883 atomic regions from SNP 32508 to 33109 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,341 DEBUG Processing 108/850 atomic regions from SNP 32207 to 32808 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,433 DEBUG Processing 37/1127 atomic regions from SNP 10818 to 11418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,496 DEBUG Processing 56/1016 atomic regions from SNP 16555 to 17156 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,574 DEBUG Processing 212/214 atomic regions from SNP 63572 to 64173 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,604 DEBUG Processing 110/883 atomic regions from SNP 32809 to 33410 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:45,606 DEBUG Processing 109/850 atomic regions from SNP 32508 to 33109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,731 DEBUG Processing 38/1127 atomic regions from SNP 11118 to 11718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:45,756 DEBUG Processing 57/1016 atomic regions from SNP 16856 to 17457 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:45,830 DEBUG Processing 213/214 atomic regions from SNP 63873 to 64474 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:45,845 DEBUG Processing 110/850 atomic regions from SNP 32809 to 33409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:45,854 DEBUG Processing 111/883 atomic regions from SNP 33110 to 33711 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,028 DEBUG Processing 58/1016 atomic regions from SNP 17157 to 17758 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,030 DEBUG Processing 39/1127 atomic regions from SNP 11418 to 12018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,140 DEBUG Processing 112/883 atomic regions from SNP 33411 to 34012 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,144 DEBUG Processing 214/214 atomic regions from SNP 64174 to 64775 for chr4 (subchromosome 1 of 2). 2025-01-31 09:43:46,150 DEBUG Processing 111/850 atomic regions from SNP 33109 to 33709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,299 DEBUG Processing 59/1016 atomic regions from SNP 17458 to 18059 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,319 DEBUG Processing 40/1127 atomic regions from SNP 11718 to 12318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,335 DEBUG Unique SNPs positions in subchromosome 1: 64776 2025-01-31 09:43:46,436 DEBUG Processing 113/883 atomic regions from SNP 33712 to 34313 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,461 DEBUG Processing 112/850 atomic regions from SNP 33409 to 34009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,555 DEBUG Processing 60/1016 atomic regions from SNP 17759 to 18360 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,556 DEBUG Subchromosome time: 59.67132162197959, subchromosome SNPs: 64776 2025-01-31 09:43:46,588 DEBUG Processing 41/1127 atomic regions from SNP 12018 to 12618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,607 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:43:46,679 DEBUG Processing 114/883 atomic regions from SNP 34013 to 34614 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,731 DEBUG Processing 113/850 atomic regions from SNP 33709 to 34309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:46,814 DEBUG Processing 61/1016 atomic regions from SNP 18060 to 18661 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:46,861 DEBUG Processing 42/1127 atomic regions from SNP 12318 to 12918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:46,928 DEBUG Processing 115/883 atomic regions from SNP 34314 to 34915 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:46,999 DEBUG Processing 114/850 atomic regions from SNP 34009 to 34609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,063 DEBUG Processing 62/1016 atomic regions from SNP 18361 to 18962 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,127 DEBUG Processing 43/1127 atomic regions from SNP 12618 to 13218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,161 DEBUG Processing 116/883 atomic regions from SNP 34615 to 35216 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,260 DEBUG Processing 115/850 atomic regions from SNP 34309 to 34909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,307 DEBUG Processing 63/1016 atomic regions from SNP 18662 to 19263 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,393 DEBUG Processing 44/1127 atomic regions from SNP 12918 to 13518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,397 DEBUG Processing 117/883 atomic regions from SNP 34916 to 35517 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,499 DEBUG Processing 116/850 atomic regions from SNP 34609 to 35209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,549 DEBUG Processing 64/1016 atomic regions from SNP 18963 to 19564 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,630 DEBUG Processing 118/883 atomic regions from SNP 35217 to 35818 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,665 DEBUG Processing 45/1127 atomic regions from SNP 13218 to 13818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,716 DEBUG Processing 117/850 atomic regions from SNP 34909 to 35509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:47,790 DEBUG Processing 65/1016 atomic regions from SNP 19264 to 19865 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:47,864 DEBUG Processing 119/883 atomic regions from SNP 35518 to 36119 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:47,933 DEBUG Processing 46/1127 atomic regions from SNP 13518 to 14118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:47,956 DEBUG Processing 118/850 atomic regions from SNP 35209 to 35809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,047 DEBUG Processing 66/1016 atomic regions from SNP 19565 to 20166 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,096 DEBUG Processing 120/883 atomic regions from SNP 35819 to 36420 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,195 DEBUG Processing 47/1127 atomic regions from SNP 13818 to 14418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,208 DEBUG Processing 119/850 atomic regions from SNP 35509 to 36109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,298 DEBUG Processing 67/1016 atomic regions from SNP 19866 to 20467 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,328 DEBUG Processing 121/883 atomic regions from SNP 36120 to 36721 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,423 DEBUG Processing 120/850 atomic regions from SNP 35809 to 36409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,451 DEBUG Processing 48/1127 atomic regions from SNP 14118 to 14718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,548 DEBUG Processing 68/1016 atomic regions from SNP 20167 to 20768 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,555 DEBUG Processing 122/883 atomic regions from SNP 36421 to 37022 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,639 DEBUG Processing 121/850 atomic regions from SNP 36109 to 36709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,717 DEBUG Processing 49/1127 atomic regions from SNP 14418 to 15018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:48,792 DEBUG Processing 123/883 atomic regions from SNP 36722 to 37323 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:48,803 DEBUG Processing 69/1016 atomic regions from SNP 20468 to 21069 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:48,860 DEBUG Processing 122/850 atomic regions from SNP 36409 to 37009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:48,976 DEBUG Processing 50/1127 atomic regions from SNP 14718 to 15318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,024 DEBUG Processing 124/883 atomic regions from SNP 37023 to 37624 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,056 DEBUG Processing 70/1016 atomic regions from SNP 20769 to 21370 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,082 DEBUG Processing 123/850 atomic regions from SNP 36709 to 37309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,241 DEBUG Processing 51/1127 atomic regions from SNP 15018 to 15618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,267 DEBUG Processing 125/883 atomic regions from SNP 37324 to 37925 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,308 DEBUG Processing 124/850 atomic regions from SNP 37009 to 37609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,310 DEBUG Processing 71/1016 atomic regions from SNP 21070 to 21671 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,494 DEBUG Processing 126/883 atomic regions from SNP 37625 to 38226 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,502 DEBUG Processing 52/1127 atomic regions from SNP 15318 to 15918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,527 DEBUG Processing 125/850 atomic regions from SNP 37309 to 37909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,557 DEBUG Processing 72/1016 atomic regions from SNP 21371 to 21972 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,730 DEBUG Processing 127/883 atomic regions from SNP 37926 to 38527 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,752 DEBUG Processing 126/850 atomic regions from SNP 37609 to 38209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:49,765 DEBUG Processing 53/1127 atomic regions from SNP 15618 to 16218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:49,804 DEBUG Processing 73/1016 atomic regions from SNP 21672 to 22273 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:49,961 DEBUG Processing 128/883 atomic regions from SNP 38227 to 38828 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:49,977 DEBUG Processing 127/850 atomic regions from SNP 37909 to 38509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,027 DEBUG Processing 54/1127 atomic regions from SNP 15918 to 16518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,051 DEBUG Processing 74/1016 atomic regions from SNP 21973 to 22574 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,198 DEBUG Processing 129/883 atomic regions from SNP 38528 to 39129 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,203 DEBUG Processing 128/850 atomic regions from SNP 38209 to 38809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,292 DEBUG Processing 55/1127 atomic regions from SNP 16218 to 16818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,298 DEBUG Processing 75/1016 atomic regions from SNP 22274 to 22875 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,428 DEBUG Processing 129/850 atomic regions from SNP 38509 to 39109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,432 DEBUG Processing 130/883 atomic regions from SNP 38829 to 39430 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,554 DEBUG Processing 76/1016 atomic regions from SNP 22575 to 23176 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,563 DEBUG Processing 56/1127 atomic regions from SNP 16518 to 17118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,661 DEBUG Processing 130/850 atomic regions from SNP 38809 to 39409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,673 DEBUG Processing 131/883 atomic regions from SNP 39130 to 39731 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:50,801 DEBUG Processing 77/1016 atomic regions from SNP 22876 to 23477 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:50,823 DEBUG Processing 57/1127 atomic regions from SNP 16818 to 17418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:50,901 DEBUG Processing 131/850 atomic regions from SNP 39109 to 39709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:50,907 DEBUG Processing 132/883 atomic regions from SNP 39431 to 40032 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,058 DEBUG Processing 78/1016 atomic regions from SNP 23177 to 23778 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,105 DEBUG Processing 58/1127 atomic regions from SNP 17118 to 17718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,134 DEBUG Processing 132/850 atomic regions from SNP 39409 to 40009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,150 DEBUG Processing 133/883 atomic regions from SNP 39732 to 40333 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,319 DEBUG Processing 79/1016 atomic regions from SNP 23478 to 24079 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,391 DEBUG Processing 134/883 atomic regions from SNP 40033 to 40634 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,392 DEBUG Processing 59/1127 atomic regions from SNP 17418 to 18018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,393 DEBUG Processing 133/850 atomic regions from SNP 39709 to 40309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,574 DEBUG Processing 80/1016 atomic regions from SNP 23779 to 24380 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,634 DEBUG Processing 134/850 atomic regions from SNP 40009 to 40609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,642 DEBUG Processing 135/883 atomic regions from SNP 40334 to 40935 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,671 DEBUG Processing 60/1127 atomic regions from SNP 17718 to 18318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:51,850 DEBUG Processing 81/1016 atomic regions from SNP 24080 to 24681 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:51,884 DEBUG Processing 135/850 atomic regions from SNP 40309 to 40909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:51,897 DEBUG Processing 136/883 atomic regions from SNP 40635 to 41236 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:51,952 DEBUG Processing 61/1127 atomic regions from SNP 18018 to 18618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,111 DEBUG Processing 82/1016 atomic regions from SNP 24381 to 24982 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,127 DEBUG Processing 136/850 atomic regions from SNP 40609 to 41209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,150 DEBUG Processing 137/883 atomic regions from SNP 40936 to 41537 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,219 DEBUG Processing 62/1127 atomic regions from SNP 18318 to 18918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,365 DEBUG Processing 83/1016 atomic regions from SNP 24682 to 25283 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,366 DEBUG Processing 137/850 atomic regions from SNP 40909 to 41509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,400 DEBUG Processing 138/883 atomic regions from SNP 41237 to 41838 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,487 DEBUG Processing 63/1127 atomic regions from SNP 18618 to 19218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,602 DEBUG Processing 138/850 atomic regions from SNP 41209 to 41809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,618 DEBUG Processing 84/1016 atomic regions from SNP 24983 to 25584 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,643 DEBUG Processing 139/883 atomic regions from SNP 41538 to 42139 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:52,763 DEBUG Processing 64/1127 atomic regions from SNP 18918 to 19518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:52,844 DEBUG Processing 139/850 atomic regions from SNP 41509 to 42109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:52,883 DEBUG Processing 85/1016 atomic regions from SNP 25284 to 25885 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:52,915 DEBUG Processing 140/883 atomic regions from SNP 41839 to 42440 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,076 DEBUG Processing 65/1127 atomic regions from SNP 19218 to 19818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,131 DEBUG Processing 140/850 atomic regions from SNP 41809 to 42409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,172 DEBUG Processing 141/883 atomic regions from SNP 42140 to 42741 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,185 DEBUG Processing 86/1016 atomic regions from SNP 25585 to 26186 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,363 DEBUG Processing 66/1127 atomic regions from SNP 19518 to 20118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,376 DEBUG Processing 141/850 atomic regions from SNP 42109 to 42709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,421 DEBUG Processing 142/883 atomic regions from SNP 42441 to 43042 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,454 DEBUG Processing 87/1016 atomic regions from SNP 25886 to 26487 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,617 DEBUG Processing 142/850 atomic regions from SNP 42409 to 43009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,645 DEBUG Processing 67/1127 atomic regions from SNP 19818 to 20418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:53,671 DEBUG Processing 143/883 atomic regions from SNP 42742 to 43343 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,744 DEBUG Processing 88/1016 atomic regions from SNP 26187 to 26788 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:53,887 DEBUG Processing 143/850 atomic regions from SNP 42709 to 43309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:53,957 DEBUG Processing 144/883 atomic regions from SNP 43043 to 43644 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:53,962 DEBUG Processing 68/1127 atomic regions from SNP 20118 to 20718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,063 DEBUG Processing 89/1016 atomic regions from SNP 26488 to 27089 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,153 DEBUG Processing 144/850 atomic regions from SNP 43009 to 43609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,281 DEBUG Processing 69/1127 atomic regions from SNP 20418 to 21018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,282 DEBUG Processing 145/883 atomic regions from SNP 43344 to 43945 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,447 DEBUG Processing 90/1016 atomic regions from SNP 26789 to 27390 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,533 DEBUG Processing 145/850 atomic regions from SNP 43309 to 43909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,618 DEBUG Processing 146/883 atomic regions from SNP 43645 to 44246 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:54,654 DEBUG Processing 70/1127 atomic regions from SNP 20718 to 21318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:54,727 DEBUG Processing 91/1016 atomic regions from SNP 27090 to 27691 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:54,803 DEBUG Processing 146/850 atomic regions from SNP 43609 to 44209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:54,929 DEBUG Processing 147/883 atomic regions from SNP 43946 to 44547 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,021 DEBUG Processing 71/1127 atomic regions from SNP 21018 to 21618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,082 DEBUG Processing 92/1016 atomic regions from SNP 27391 to 27992 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,093 DEBUG Processing 147/850 atomic regions from SNP 43909 to 44509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,182 DEBUG Processing 148/883 atomic regions from SNP 44247 to 44848 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,313 DEBUG Processing 72/1127 atomic regions from SNP 21318 to 21918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,383 DEBUG Processing 93/1016 atomic regions from SNP 27692 to 28293 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,394 DEBUG Processing 148/850 atomic regions from SNP 44209 to 44809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,453 DEBUG Processing 149/883 atomic regions from SNP 44548 to 45149 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:55,710 DEBUG Processing 73/1127 atomic regions from SNP 21618 to 22218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:55,751 DEBUG Processing 149/850 atomic regions from SNP 44509 to 45109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:55,756 DEBUG Processing 94/1016 atomic regions from SNP 27993 to 28594 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:55,757 DEBUG Processing 150/883 atomic regions from SNP 44849 to 45450 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,149 DEBUG Processing 74/1127 atomic regions from SNP 21918 to 22518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,150 DEBUG Processing 95/1016 atomic regions from SNP 28294 to 28895 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,166 DEBUG Processing 150/850 atomic regions from SNP 44809 to 45409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,185 DEBUG Processing 151/883 atomic regions from SNP 45150 to 45751 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,457 DEBUG Segmenting atomic regions: 2025-01-31 09:43:56,496 DEBUG Processing 96/1016 atomic regions from SNP 28595 to 29196 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,513 DEBUG Processing 75/1127 atomic regions from SNP 22218 to 22818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,523 DEBUG Processing 151/850 atomic regions from SNP 45109 to 45709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,575 DEBUG Processing 152/883 atomic regions from SNP 45451 to 46052 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,579 DEBUG Processing 1/363 atomic regions from SNP 0 to 601 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:56,901 DEBUG Processing 97/1016 atomic regions from SNP 28896 to 29497 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:56,951 DEBUG Processing 152/850 atomic regions from SNP 45409 to 46009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:56,957 DEBUG Processing 76/1127 atomic regions from SNP 22518 to 23118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:56,967 DEBUG Processing 153/883 atomic regions from SNP 45752 to 46353 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:56,967 DEBUG Processing 2/363 atomic regions from SNP 301 to 902 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:57,320 DEBUG Processing 98/1016 atomic regions from SNP 29197 to 29798 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,351 DEBUG Processing 153/850 atomic regions from SNP 45709 to 46309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,352 DEBUG Processing 3/363 atomic regions from SNP 602 to 1203 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:57,379 DEBUG Processing 154/883 atomic regions from SNP 46053 to 46654 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,392 DEBUG Processing 77/1127 atomic regions from SNP 22818 to 23418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,591 DEBUG Processing 99/1016 atomic regions from SNP 29498 to 30099 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,622 DEBUG Processing 154/850 atomic regions from SNP 46009 to 46609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,622 DEBUG Processing 4/363 atomic regions from SNP 903 to 1504 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:57,661 DEBUG Processing 155/883 atomic regions from SNP 46354 to 46955 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:57,706 DEBUG Processing 78/1127 atomic regions from SNP 23118 to 23718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:57,869 DEBUG Processing 100/1016 atomic regions from SNP 29799 to 30400 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:57,887 DEBUG Processing 155/850 atomic regions from SNP 46309 to 46909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:57,927 DEBUG Processing 5/363 atomic regions from SNP 1204 to 1805 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:58,002 DEBUG Processing 156/883 atomic regions from SNP 46655 to 47256 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,089 DEBUG Processing 79/1127 atomic regions from SNP 23418 to 24018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,204 DEBUG Processing 156/850 atomic regions from SNP 46609 to 47209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,216 DEBUG Processing 101/1016 atomic regions from SNP 30100 to 30701 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,252 DEBUG Processing 6/363 atomic regions from SNP 1505 to 2106 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:58,281 DEBUG Processing 157/883 atomic regions from SNP 46956 to 47557 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,405 DEBUG Processing 80/1127 atomic regions from SNP 23718 to 24318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,499 DEBUG Processing 157/850 atomic regions from SNP 46909 to 47509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,508 DEBUG Processing 102/1016 atomic regions from SNP 30401 to 31002 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,570 DEBUG Processing 7/363 atomic regions from SNP 1806 to 2407 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:58,614 DEBUG Processing 158/883 atomic regions from SNP 47257 to 47858 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:58,771 DEBUG Processing 81/1127 atomic regions from SNP 24018 to 24618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:58,863 DEBUG Processing 158/850 atomic regions from SNP 47209 to 47809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:58,888 DEBUG Processing 103/1016 atomic regions from SNP 30702 to 31303 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:58,891 DEBUG Processing 8/363 atomic regions from SNP 2107 to 2708 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:58,912 DEBUG Processing 159/883 atomic regions from SNP 47558 to 48159 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,083 DEBUG Processing 82/1127 atomic regions from SNP 24318 to 24918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,169 DEBUG Processing 159/850 atomic regions from SNP 47509 to 48109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,279 DEBUG Processing 9/363 atomic regions from SNP 2408 to 3009 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:59,310 DEBUG Processing 160/883 atomic regions from SNP 47859 to 48460 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,313 DEBUG Processing 104/1016 atomic regions from SNP 31003 to 31604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,504 DEBUG Processing 83/1127 atomic regions from SNP 24618 to 25218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,520 DEBUG Processing 160/850 atomic regions from SNP 47809 to 48409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,612 DEBUG Processing 10/363 atomic regions from SNP 2709 to 3310 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:59,650 DEBUG Processing 161/883 atomic regions from SNP 48160 to 48761 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,682 DEBUG Processing 105/1016 atomic regions from SNP 31304 to 31904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:43:59,854 DEBUG Processing 161/850 atomic regions from SNP 48109 to 48709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:43:59,878 DEBUG Processing 84/1127 atomic regions from SNP 24918 to 25518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:43:59,881 DEBUG Processing 11/363 atomic regions from SNP 3010 to 3611 for chrX (subchromosome 5 of 6). 2025-01-31 09:43:59,921 DEBUG Processing 162/883 atomic regions from SNP 48461 to 49062 for chr3 (subchromosome 1 of 1). 2025-01-31 09:43:59,962 DEBUG Processing 106/1016 atomic regions from SNP 31604 to 32204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,135 DEBUG Processing 12/363 atomic regions from SNP 3311 to 3912 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:00,160 DEBUG Processing 162/850 atomic regions from SNP 48409 to 49009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,169 DEBUG Processing 85/1127 atomic regions from SNP 25218 to 25818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,188 DEBUG Processing 163/883 atomic regions from SNP 48762 to 49363 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,241 DEBUG Processing 107/1016 atomic regions from SNP 31904 to 32504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,387 DEBUG Processing 13/363 atomic regions from SNP 3612 to 4213 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:00,449 DEBUG Processing 163/850 atomic regions from SNP 48709 to 49309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,450 DEBUG Processing 164/883 atomic regions from SNP 49063 to 49664 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,460 DEBUG Processing 86/1127 atomic regions from SNP 25518 to 26118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,537 DEBUG Processing 108/1016 atomic regions from SNP 32204 to 32804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,645 DEBUG Processing 14/363 atomic regions from SNP 3913 to 4514 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:00,732 DEBUG Processing 165/883 atomic regions from SNP 49364 to 49965 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:00,739 DEBUG Processing 164/850 atomic regions from SNP 49009 to 49609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:00,771 DEBUG Processing 87/1127 atomic regions from SNP 25818 to 26418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:00,822 DEBUG Processing 109/1016 atomic regions from SNP 32504 to 33104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:00,896 DEBUG Processing 15/363 atomic regions from SNP 4214 to 4815 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:00,981 DEBUG Processing 166/883 atomic regions from SNP 49665 to 50266 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,008 DEBUG Processing 165/850 atomic regions from SNP 49309 to 49909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,053 DEBUG Processing 88/1127 atomic regions from SNP 26118 to 26718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,100 DEBUG Processing 110/1016 atomic regions from SNP 32804 to 33404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,131 DEBUG Processing 16/363 atomic regions from SNP 4515 to 5116 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:01,229 DEBUG Processing 167/883 atomic regions from SNP 49966 to 50567 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,277 DEBUG Processing 166/850 atomic regions from SNP 49609 to 50209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,332 DEBUG Processing 89/1127 atomic regions from SNP 26418 to 27018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,363 DEBUG Processing 17/363 atomic regions from SNP 4816 to 5417 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:01,377 DEBUG Processing 111/1016 atomic regions from SNP 33104 to 33704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,466 DEBUG Processing 168/883 atomic regions from SNP 50267 to 50868 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,540 DEBUG Processing 167/850 atomic regions from SNP 49909 to 50509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,597 DEBUG Processing 18/363 atomic regions from SNP 5117 to 5718 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:01,619 DEBUG Processing 90/1127 atomic regions from SNP 26718 to 27318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,658 DEBUG Processing 112/1016 atomic regions from SNP 33404 to 34004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,711 DEBUG Processing 169/883 atomic regions from SNP 50568 to 51169 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:01,794 DEBUG Processing 168/850 atomic regions from SNP 50209 to 50809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:01,834 DEBUG Processing 19/363 atomic regions from SNP 5418 to 6019 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:01,911 DEBUG Processing 91/1127 atomic regions from SNP 27018 to 27618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:01,931 DEBUG Processing 113/1016 atomic regions from SNP 33704 to 34304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:01,958 DEBUG Processing 170/883 atomic regions from SNP 50869 to 51470 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,035 DEBUG Processing 169/850 atomic regions from SNP 50509 to 51109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,074 DEBUG Processing 20/363 atomic regions from SNP 5719 to 6320 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:02,195 DEBUG Processing 92/1127 atomic regions from SNP 27318 to 27918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,200 DEBUG Processing 171/883 atomic regions from SNP 51170 to 51771 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,202 DEBUG Processing 114/1016 atomic regions from SNP 34004 to 34604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,303 DEBUG Processing 21/363 atomic regions from SNP 6020 to 6621 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:02,303 DEBUG Processing 170/850 atomic regions from SNP 50809 to 51409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,435 DEBUG Processing 172/883 atomic regions from SNP 51471 to 52072 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,460 DEBUG Processing 115/1016 atomic regions from SNP 34304 to 34904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,462 DEBUG Processing 93/1127 atomic regions from SNP 27618 to 28218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,534 DEBUG Processing 22/363 atomic regions from SNP 6321 to 6922 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:02,559 DEBUG Processing 171/850 atomic regions from SNP 51109 to 51709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,664 DEBUG Processing 173/883 atomic regions from SNP 51772 to 52373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,715 DEBUG Processing 116/1016 atomic regions from SNP 34604 to 35204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,736 DEBUG Processing 94/1127 atomic regions from SNP 27918 to 28518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:02,763 DEBUG Processing 23/363 atomic regions from SNP 6622 to 7223 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:02,825 DEBUG Processing 172/850 atomic regions from SNP 51409 to 52009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:02,896 DEBUG Processing 174/883 atomic regions from SNP 52073 to 52674 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:02,975 DEBUG Processing 117/1016 atomic regions from SNP 34904 to 35504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:02,990 DEBUG Processing 24/363 atomic regions from SNP 6923 to 7524 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:03,010 DEBUG Processing 95/1127 atomic regions from SNP 28218 to 28818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,089 DEBUG Processing 173/850 atomic regions from SNP 51709 to 52309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,130 DEBUG Processing 175/883 atomic regions from SNP 52374 to 52975 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,216 DEBUG Processing 25/363 atomic regions from SNP 7224 to 7825 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:03,231 DEBUG Processing 118/1016 atomic regions from SNP 35204 to 35804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,287 DEBUG Processing 96/1127 atomic regions from SNP 28518 to 29118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,332 DEBUG Processing 174/850 atomic regions from SNP 52009 to 52609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,363 DEBUG Processing 176/883 atomic regions from SNP 52675 to 53276 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,436 DEBUG Processing 26/363 atomic regions from SNP 7525 to 8126 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:03,492 DEBUG Processing 119/1016 atomic regions from SNP 35504 to 36104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,566 DEBUG Processing 97/1127 atomic regions from SNP 28818 to 29418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,593 DEBUG Processing 175/850 atomic regions from SNP 52309 to 52909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,598 DEBUG Processing 177/883 atomic regions from SNP 52976 to 53577 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,654 DEBUG Processing 27/363 atomic regions from SNP 7826 to 8427 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:03,740 DEBUG Processing 120/1016 atomic regions from SNP 35804 to 36404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:03,837 DEBUG Processing 176/850 atomic regions from SNP 52609 to 53209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:03,842 DEBUG Processing 178/883 atomic regions from SNP 53277 to 53878 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:03,842 DEBUG Processing 98/1127 atomic regions from SNP 29118 to 29718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:03,879 DEBUG Processing 28/363 atomic regions from SNP 8127 to 8728 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:03,985 DEBUG Processing 121/1016 atomic regions from SNP 36104 to 36704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,077 DEBUG Processing 177/850 atomic regions from SNP 52909 to 53509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,084 DEBUG Processing 179/883 atomic regions from SNP 53578 to 54179 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,113 DEBUG Processing 29/363 atomic regions from SNP 8428 to 9029 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:04,126 DEBUG Processing 99/1127 atomic regions from SNP 29418 to 30018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,238 DEBUG Processing 122/1016 atomic regions from SNP 36404 to 37004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,323 DEBUG Processing 178/850 atomic regions from SNP 53209 to 53809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,334 DEBUG Processing 180/883 atomic regions from SNP 53879 to 54480 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,345 DEBUG Processing 30/363 atomic regions from SNP 8729 to 9330 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:04,405 DEBUG Processing 100/1127 atomic regions from SNP 29718 to 30318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,486 DEBUG Processing 123/1016 atomic regions from SNP 36704 to 37304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,562 DEBUG Processing 179/850 atomic regions from SNP 53509 to 54109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,570 DEBUG Processing 181/883 atomic regions from SNP 54180 to 54781 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,571 DEBUG Processing 31/363 atomic regions from SNP 9030 to 9631 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:04,687 DEBUG Processing 101/1127 atomic regions from SNP 30018 to 30618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,738 DEBUG Processing 124/1016 atomic regions from SNP 37004 to 37604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:04,787 DEBUG Processing 180/850 atomic regions from SNP 53809 to 54409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:04,793 DEBUG Processing 32/363 atomic regions from SNP 9331 to 9932 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:04,802 DEBUG Processing 182/883 atomic regions from SNP 54481 to 55082 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:04,952 DEBUG Processing 102/1127 atomic regions from SNP 30318 to 30918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:04,994 DEBUG Processing 125/1016 atomic regions from SNP 37304 to 37904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,012 DEBUG Processing 33/363 atomic regions from SNP 9632 to 10233 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:05,014 DEBUG Processing 181/850 atomic regions from SNP 54109 to 54709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,037 DEBUG Processing 183/883 atomic regions from SNP 54782 to 55383 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,216 DEBUG Processing 103/1127 atomic regions from SNP 30618 to 31218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,235 DEBUG Processing 34/363 atomic regions from SNP 9933 to 10534 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:05,241 DEBUG Processing 182/850 atomic regions from SNP 54409 to 55009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,255 DEBUG Processing 126/1016 atomic regions from SNP 37604 to 38204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,271 DEBUG Processing 184/883 atomic regions from SNP 55083 to 55684 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,458 DEBUG Processing 35/363 atomic regions from SNP 10234 to 10835 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:05,469 DEBUG Processing 183/850 atomic regions from SNP 54709 to 55309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,486 DEBUG Processing 104/1127 atomic regions from SNP 30918 to 31518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,511 DEBUG Processing 185/883 atomic regions from SNP 55384 to 55985 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,537 DEBUG Processing 127/1016 atomic regions from SNP 37904 to 38504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,684 DEBUG Processing 36/363 atomic regions from SNP 10535 to 11136 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:05,718 DEBUG Processing 184/850 atomic regions from SNP 55009 to 55609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,746 DEBUG Processing 186/883 atomic regions from SNP 55685 to 56286 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:05,763 DEBUG Processing 105/1127 atomic regions from SNP 31218 to 31818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:05,830 DEBUG Processing 128/1016 atomic regions from SNP 38204 to 38804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:05,903 DEBUG Processing 37/363 atomic regions from SNP 10836 to 11437 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:05,980 DEBUG Processing 185/850 atomic regions from SNP 55309 to 55909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:05,980 DEBUG Processing 187/883 atomic regions from SNP 55986 to 56587 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,040 DEBUG Processing 106/1127 atomic regions from SNP 31518 to 32118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,118 DEBUG Processing 129/1016 atomic regions from SNP 38504 to 39104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,121 DEBUG Processing 38/363 atomic regions from SNP 11137 to 11738 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:06,222 DEBUG Processing 188/883 atomic regions from SNP 56287 to 56888 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,242 DEBUG Processing 186/850 atomic regions from SNP 55609 to 56209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,313 DEBUG Processing 107/1127 atomic regions from SNP 31818 to 32418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,341 DEBUG Processing 39/363 atomic regions from SNP 11438 to 12039 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:06,409 DEBUG Processing 130/1016 atomic regions from SNP 38804 to 39404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,455 DEBUG Processing 189/883 atomic regions from SNP 56588 to 57189 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,482 DEBUG Processing 187/850 atomic regions from SNP 55909 to 56509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,563 DEBUG Processing 40/363 atomic regions from SNP 11739 to 12340 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:06,579 DEBUG Processing 108/1127 atomic regions from SNP 32118 to 32718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,689 DEBUG Processing 190/883 atomic regions from SNP 56889 to 57490 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,701 DEBUG Processing 131/1016 atomic regions from SNP 39104 to 39704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:06,710 DEBUG Processing 188/850 atomic regions from SNP 56209 to 56809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,782 DEBUG Processing 41/363 atomic regions from SNP 12040 to 12641 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:06,843 DEBUG Processing 109/1127 atomic regions from SNP 32418 to 33018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:06,934 DEBUG Processing 191/883 atomic regions from SNP 57190 to 57791 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:06,945 DEBUG Processing 189/850 atomic regions from SNP 56509 to 57109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:06,987 DEBUG Processing 132/1016 atomic regions from SNP 39404 to 40004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,008 DEBUG Processing 42/363 atomic regions from SNP 12341 to 12942 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:07,107 DEBUG Processing 110/1127 atomic regions from SNP 32718 to 33318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,169 DEBUG Processing 192/883 atomic regions from SNP 57491 to 58092 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,173 DEBUG Processing 190/850 atomic regions from SNP 56809 to 57409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,231 DEBUG Processing 43/363 atomic regions from SNP 12642 to 13243 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:07,247 DEBUG Processing 133/1016 atomic regions from SNP 39704 to 40304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,373 DEBUG Processing 111/1127 atomic regions from SNP 33018 to 33618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,413 DEBUG Processing 191/850 atomic regions from SNP 57109 to 57709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,416 DEBUG Processing 193/883 atomic regions from SNP 57792 to 58393 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,461 DEBUG Processing 44/363 atomic regions from SNP 12943 to 13544 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:07,538 DEBUG Processing 134/1016 atomic regions from SNP 40004 to 40604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,648 DEBUG Processing 112/1127 atomic regions from SNP 33318 to 33918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:07,653 DEBUG Processing 192/850 atomic regions from SNP 57409 to 58009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,661 DEBUG Processing 194/883 atomic regions from SNP 58093 to 58694 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,691 DEBUG Processing 45/363 atomic regions from SNP 13244 to 13845 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:07,825 DEBUG Processing 135/1016 atomic regions from SNP 40304 to 40904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:07,887 DEBUG Processing 193/850 atomic regions from SNP 57709 to 58309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:07,903 DEBUG Processing 195/883 atomic regions from SNP 58394 to 58995 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:07,918 DEBUG Processing 46/363 atomic regions from SNP 13545 to 14146 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:07,918 DEBUG Processing 113/1127 atomic regions from SNP 33618 to 34218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,109 DEBUG Processing 136/1016 atomic regions from SNP 40604 to 41204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,124 DEBUG Processing 194/850 atomic regions from SNP 58009 to 58609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,152 DEBUG Processing 47/363 atomic regions from SNP 13846 to 14447 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:08,156 DEBUG Processing 196/883 atomic regions from SNP 58695 to 59296 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,195 DEBUG Processing 114/1127 atomic regions from SNP 33918 to 34518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,358 DEBUG Processing 195/850 atomic regions from SNP 58309 to 58909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,389 DEBUG Processing 48/363 atomic regions from SNP 14147 to 14748 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:08,402 DEBUG Processing 137/1016 atomic regions from SNP 40904 to 41504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,403 DEBUG Processing 197/883 atomic regions from SNP 58996 to 59597 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,473 DEBUG Processing 115/1127 atomic regions from SNP 34218 to 34818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,594 DEBUG Processing 196/850 atomic regions from SNP 58609 to 59209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,623 DEBUG Processing 49/363 atomic regions from SNP 14448 to 15049 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:08,653 DEBUG Processing 198/883 atomic regions from SNP 59297 to 59898 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,695 DEBUG Processing 138/1016 atomic regions from SNP 41204 to 41804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:08,743 DEBUG Processing 116/1127 atomic regions from SNP 34518 to 35118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:08,838 DEBUG Processing 197/850 atomic regions from SNP 58909 to 59509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:08,852 DEBUG Processing 50/363 atomic regions from SNP 14749 to 15350 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:08,891 DEBUG Processing 199/883 atomic regions from SNP 59598 to 60199 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:08,963 DEBUG Processing 139/1016 atomic regions from SNP 41504 to 42104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,012 DEBUG Processing 117/1127 atomic regions from SNP 34818 to 35418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,078 DEBUG Processing 198/850 atomic regions from SNP 59209 to 59809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,088 DEBUG Processing 51/363 atomic regions from SNP 15050 to 15651 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:09,141 DEBUG Processing 200/883 atomic regions from SNP 59899 to 60500 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,258 DEBUG Processing 140/1016 atomic regions from SNP 41804 to 42404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,285 DEBUG Processing 118/1127 atomic regions from SNP 35118 to 35718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,312 DEBUG Processing 199/850 atomic regions from SNP 59509 to 60109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,316 DEBUG Processing 52/363 atomic regions from SNP 15351 to 15952 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:09,382 DEBUG Processing 201/883 atomic regions from SNP 60200 to 60801 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,536 DEBUG Processing 141/1016 atomic regions from SNP 42104 to 42704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,544 DEBUG Processing 53/363 atomic regions from SNP 15652 to 16253 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:09,544 DEBUG Processing 200/850 atomic regions from SNP 59809 to 60409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,554 DEBUG Processing 119/1127 atomic regions from SNP 35418 to 36018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,615 DEBUG Processing 202/883 atomic regions from SNP 60501 to 61102 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,770 DEBUG Processing 54/363 atomic regions from SNP 15953 to 16554 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:09,776 DEBUG Processing 201/850 atomic regions from SNP 60109 to 60709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:09,811 DEBUG Processing 142/1016 atomic regions from SNP 42404 to 43004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:09,828 DEBUG Processing 120/1127 atomic regions from SNP 35718 to 36318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:09,856 DEBUG Processing 203/883 atomic regions from SNP 60802 to 61403 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:09,998 DEBUG Processing 55/363 atomic regions from SNP 16254 to 16855 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:10,008 DEBUG Processing 202/850 atomic regions from SNP 60409 to 61009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,094 DEBUG Processing 204/883 atomic regions from SNP 61103 to 61704 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,107 DEBUG Processing 121/1127 atomic regions from SNP 36018 to 36618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,108 DEBUG Processing 143/1016 atomic regions from SNP 42704 to 43304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,220 DEBUG Processing 56/363 atomic regions from SNP 16555 to 17156 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:10,235 DEBUG Processing 203/850 atomic regions from SNP 60709 to 61309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,328 DEBUG Processing 205/883 atomic regions from SNP 61404 to 62005 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,376 DEBUG Processing 122/1127 atomic regions from SNP 36318 to 36918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,398 DEBUG Processing 144/1016 atomic regions from SNP 43004 to 43604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,445 DEBUG Processing 57/363 atomic regions from SNP 16856 to 17457 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:10,467 DEBUG Processing 204/850 atomic regions from SNP 61009 to 61609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,569 DEBUG Processing 206/883 atomic regions from SNP 61705 to 62306 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,646 DEBUG Processing 123/1127 atomic regions from SNP 36618 to 37218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,682 DEBUG Processing 58/363 atomic regions from SNP 17157 to 17758 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:10,691 DEBUG Processing 145/1016 atomic regions from SNP 43304 to 43904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:10,711 DEBUG Processing 205/850 atomic regions from SNP 61309 to 61909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,809 DEBUG Processing 207/883 atomic regions from SNP 62006 to 62607 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:10,910 DEBUG Processing 59/363 atomic regions from SNP 17458 to 18059 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:10,917 DEBUG Processing 124/1127 atomic regions from SNP 36918 to 37518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:10,946 DEBUG Processing 206/850 atomic regions from SNP 61609 to 62209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:10,969 DEBUG Processing 146/1016 atomic regions from SNP 43604 to 44204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,044 DEBUG Processing 208/883 atomic regions from SNP 62307 to 62908 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,070 DEBUG Segmenting atomic regions: 2025-01-31 09:44:11,135 DEBUG Processing 60/363 atomic regions from SNP 17759 to 18360 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:11,178 DEBUG Processing 207/850 atomic regions from SNP 61909 to 62509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,187 DEBUG Processing 125/1127 atomic regions from SNP 37218 to 37818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,192 DEBUG Processing 1/642 atomic regions from SNP 0 to 601 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,248 DEBUG Processing 147/1016 atomic regions from SNP 43904 to 44504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,276 DEBUG Processing 209/883 atomic regions from SNP 62608 to 63209 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,366 DEBUG Processing 61/363 atomic regions from SNP 18060 to 18661 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:11,415 DEBUG Processing 208/850 atomic regions from SNP 62209 to 62809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,457 DEBUG Processing 126/1127 atomic regions from SNP 37518 to 38118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,458 DEBUG Processing 2/642 atomic regions from SNP 301 to 902 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,510 DEBUG Processing 210/883 atomic regions from SNP 62909 to 63510 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,513 DEBUG Processing 148/1016 atomic regions from SNP 44204 to 44804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,595 DEBUG Processing 62/363 atomic regions from SNP 18361 to 18962 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:11,651 DEBUG Processing 209/850 atomic regions from SNP 62509 to 63109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,720 DEBUG Processing 3/642 atomic regions from SNP 602 to 1203 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,725 DEBUG Processing 127/1127 atomic regions from SNP 37818 to 38418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:11,744 DEBUG Processing 211/883 atomic regions from SNP 63210 to 63811 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,779 DEBUG Processing 149/1016 atomic regions from SNP 44504 to 45104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:11,821 DEBUG Processing 63/363 atomic regions from SNP 18662 to 19263 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:11,887 DEBUG Processing 210/850 atomic regions from SNP 62809 to 63409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:11,955 DEBUG Processing 4/642 atomic regions from SNP 903 to 1504 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:11,976 DEBUG Processing 212/883 atomic regions from SNP 63511 to 64112 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:11,993 DEBUG Processing 128/1127 atomic regions from SNP 38118 to 38718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,048 DEBUG Processing 64/363 atomic regions from SNP 18963 to 19564 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:12,066 DEBUG Processing 150/1016 atomic regions from SNP 44804 to 45404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,122 DEBUG Processing 211/850 atomic regions from SNP 63109 to 63709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,209 DEBUG Processing 213/883 atomic regions from SNP 63812 to 64413 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,222 DEBUG Processing 5/642 atomic regions from SNP 1204 to 1805 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,249 DEBUG Processing 129/1127 atomic regions from SNP 38418 to 39018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,271 DEBUG Processing 65/363 atomic regions from SNP 19264 to 19865 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:12,360 DEBUG Processing 151/1016 atomic regions from SNP 45104 to 45704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,367 DEBUG Processing 212/850 atomic regions from SNP 63409 to 64009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,441 DEBUG Processing 214/883 atomic regions from SNP 64113 to 64714 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,494 DEBUG Processing 6/642 atomic regions from SNP 1505 to 2106 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,494 DEBUG Processing 66/363 atomic regions from SNP 19565 to 20166 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:12,510 DEBUG Processing 130/1127 atomic regions from SNP 38718 to 39318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,601 DEBUG Processing 213/850 atomic regions from SNP 63709 to 64309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,644 DEBUG Processing 152/1016 atomic regions from SNP 45404 to 46004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,676 DEBUG Processing 215/883 atomic regions from SNP 64414 to 65015 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,717 DEBUG Processing 67/363 atomic regions from SNP 19866 to 20467 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:12,746 DEBUG Processing 7/642 atomic regions from SNP 1806 to 2407 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:12,779 DEBUG Processing 131/1127 atomic regions from SNP 39018 to 39618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:12,831 DEBUG Processing 214/850 atomic regions from SNP 64009 to 64609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:12,912 DEBUG Processing 153/1016 atomic regions from SNP 45704 to 46304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:12,915 DEBUG Processing 216/883 atomic regions from SNP 64715 to 65316 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:12,945 DEBUG Processing 68/363 atomic regions from SNP 20167 to 20768 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:13,005 DEBUG Processing 8/642 atomic regions from SNP 2107 to 2708 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,040 DEBUG Processing 132/1127 atomic regions from SNP 39318 to 39918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,065 DEBUG Processing 215/850 atomic regions from SNP 64309 to 64909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,150 DEBUG Processing 217/883 atomic regions from SNP 65016 to 65617 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,170 DEBUG Processing 69/363 atomic regions from SNP 20468 to 21069 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:13,177 DEBUG Processing 154/1016 atomic regions from SNP 46004 to 46604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,279 DEBUG Processing 9/642 atomic regions from SNP 2408 to 3009 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,300 DEBUG Processing 133/1127 atomic regions from SNP 39618 to 40218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,300 DEBUG Processing 216/850 atomic regions from SNP 64609 to 65209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,384 DEBUG Processing 218/883 atomic regions from SNP 65317 to 65918 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,392 DEBUG Processing 70/363 atomic regions from SNP 20769 to 21370 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:13,435 DEBUG Processing 155/1016 atomic regions from SNP 46304 to 46904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,535 DEBUG Processing 10/642 atomic regions from SNP 2709 to 3310 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,539 DEBUG Processing 217/850 atomic regions from SNP 64909 to 65509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,565 DEBUG Processing 134/1127 atomic regions from SNP 39918 to 40518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,611 DEBUG Processing 71/363 atomic regions from SNP 21070 to 21671 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:13,615 DEBUG Processing 219/883 atomic regions from SNP 65618 to 66219 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,693 DEBUG Processing 156/1016 atomic regions from SNP 46604 to 47204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:13,779 DEBUG Processing 11/642 atomic regions from SNP 3010 to 3611 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:13,780 DEBUG Processing 218/850 atomic regions from SNP 65209 to 65809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:13,834 DEBUG Processing 72/363 atomic regions from SNP 21371 to 21972 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:13,835 DEBUG Processing 135/1127 atomic regions from SNP 40218 to 40818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:13,849 DEBUG Processing 220/883 atomic regions from SNP 65919 to 66520 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:13,967 DEBUG Processing 157/1016 atomic regions from SNP 46904 to 47504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,022 DEBUG Processing 219/850 atomic regions from SNP 65509 to 66109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,027 DEBUG Processing 12/642 atomic regions from SNP 3311 to 3912 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,065 DEBUG Processing 73/363 atomic regions from SNP 21672 to 22273 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:14,087 DEBUG Processing 221/883 atomic regions from SNP 66220 to 66821 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,109 DEBUG Processing 136/1127 atomic regions from SNP 40518 to 41118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,255 DEBUG Processing 158/1016 atomic regions from SNP 47204 to 47804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,267 DEBUG Processing 220/850 atomic regions from SNP 65809 to 66409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,275 DEBUG Processing 13/642 atomic regions from SNP 3612 to 4213 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,302 DEBUG Processing 74/363 atomic regions from SNP 21973 to 22574 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:14,326 DEBUG Processing 222/883 atomic regions from SNP 66521 to 67122 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,366 DEBUG Processing 137/1127 atomic regions from SNP 40818 to 41418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,510 DEBUG Processing 221/850 atomic regions from SNP 66109 to 66709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,531 DEBUG Processing 14/642 atomic regions from SNP 3913 to 4514 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,542 DEBUG Processing 75/363 atomic regions from SNP 22274 to 22875 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:14,548 DEBUG Processing 159/1016 atomic regions from SNP 47504 to 48104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,572 DEBUG Processing 223/883 atomic regions from SNP 66822 to 67423 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,625 DEBUG Processing 138/1127 atomic regions from SNP 41118 to 41718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,748 DEBUG Processing 222/850 atomic regions from SNP 66409 to 67009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:14,775 DEBUG Processing 76/363 atomic regions from SNP 22575 to 23176 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:14,806 DEBUG Processing 15/642 atomic regions from SNP 4214 to 4815 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:14,815 DEBUG Processing 224/883 atomic regions from SNP 67123 to 67724 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:14,842 DEBUG Processing 160/1016 atomic regions from SNP 47804 to 48404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:14,881 DEBUG Processing 139/1127 atomic regions from SNP 41418 to 42018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:14,986 DEBUG Processing 223/850 atomic regions from SNP 66709 to 67309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,006 DEBUG Processing 77/363 atomic regions from SNP 22876 to 23477 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:15,059 DEBUG Processing 225/883 atomic regions from SNP 67424 to 68025 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,065 DEBUG Processing 16/642 atomic regions from SNP 4515 to 5116 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,127 DEBUG Processing 161/1016 atomic regions from SNP 48104 to 48704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,138 DEBUG Processing 140/1127 atomic regions from SNP 41718 to 42318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,222 DEBUG Processing 224/850 atomic regions from SNP 67009 to 67609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,233 DEBUG Processing 78/363 atomic regions from SNP 23177 to 23778 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:15,297 DEBUG Processing 226/883 atomic regions from SNP 67725 to 68326 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,317 DEBUG Processing 17/642 atomic regions from SNP 4816 to 5417 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,397 DEBUG Processing 141/1127 atomic regions from SNP 42018 to 42618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,409 DEBUG Processing 162/1016 atomic regions from SNP 48404 to 49004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,448 DEBUG Processing 225/850 atomic regions from SNP 67309 to 67909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,456 DEBUG Processing 79/363 atomic regions from SNP 23478 to 24079 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:15,528 DEBUG Processing 227/883 atomic regions from SNP 68026 to 68627 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,560 DEBUG Processing 18/642 atomic regions from SNP 5117 to 5718 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,657 DEBUG Processing 142/1127 atomic regions from SNP 42318 to 42918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,678 DEBUG Processing 163/1016 atomic regions from SNP 48704 to 49304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,680 DEBUG Processing 226/850 atomic regions from SNP 67609 to 68209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,683 DEBUG Processing 80/363 atomic regions from SNP 23779 to 24380 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:15,758 DEBUG Processing 228/883 atomic regions from SNP 68327 to 68928 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:15,809 DEBUG Processing 19/642 atomic regions from SNP 5418 to 6019 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:15,915 DEBUG Processing 81/363 atomic regions from SNP 24080 to 24681 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:15,917 DEBUG Processing 227/850 atomic regions from SNP 67909 to 68509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:15,923 DEBUG Processing 143/1127 atomic regions from SNP 42618 to 43218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:15,960 DEBUG Processing 164/1016 atomic regions from SNP 49004 to 49604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:15,992 DEBUG Processing 229/883 atomic regions from SNP 68628 to 69229 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,064 DEBUG Processing 20/642 atomic regions from SNP 5719 to 6320 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,150 DEBUG Processing 82/363 atomic regions from SNP 24381 to 24982 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:16,155 DEBUG Processing 228/850 atomic regions from SNP 68209 to 68809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,188 DEBUG Processing 144/1127 atomic regions from SNP 42918 to 43518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,227 DEBUG Processing 230/883 atomic regions from SNP 68929 to 69530 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,253 DEBUG Processing 165/1016 atomic regions from SNP 49304 to 49904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,312 DEBUG Processing 21/642 atomic regions from SNP 6020 to 6621 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,382 DEBUG Processing 83/363 atomic regions from SNP 24682 to 25283 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:16,391 DEBUG Processing 229/850 atomic regions from SNP 68509 to 69109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,457 DEBUG Processing 145/1127 atomic regions from SNP 43218 to 43818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,464 DEBUG Processing 231/883 atomic regions from SNP 69230 to 69831 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,538 DEBUG Processing 166/1016 atomic regions from SNP 49604 to 50204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,562 DEBUG Processing 22/642 atomic regions from SNP 6321 to 6922 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,608 DEBUG Processing 84/363 atomic regions from SNP 24983 to 25584 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:16,623 DEBUG Processing 230/850 atomic regions from SNP 68809 to 69409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,706 DEBUG Processing 232/883 atomic regions from SNP 69531 to 70132 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:16,733 DEBUG Processing 146/1127 atomic regions from SNP 43518 to 44118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:16,817 DEBUG Processing 23/642 atomic regions from SNP 6622 to 7223 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:16,817 DEBUG Processing 167/1016 atomic regions from SNP 49904 to 50504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:16,836 DEBUG Processing 85/363 atomic regions from SNP 25284 to 25885 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:16,858 DEBUG Processing 231/850 atomic regions from SNP 69109 to 69709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:16,942 DEBUG Processing 233/883 atomic regions from SNP 69832 to 70433 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,000 DEBUG Processing 147/1127 atomic regions from SNP 43818 to 44418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,064 DEBUG Processing 86/363 atomic regions from SNP 25585 to 26186 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:17,085 DEBUG Processing 168/1016 atomic regions from SNP 50204 to 50804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,085 DEBUG Processing 24/642 atomic regions from SNP 6923 to 7524 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,091 DEBUG Processing 232/850 atomic regions from SNP 69409 to 70009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,180 DEBUG Processing 234/883 atomic regions from SNP 70133 to 70734 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,261 DEBUG Processing 148/1127 atomic regions from SNP 44118 to 44718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,290 DEBUG Processing 87/363 atomic regions from SNP 25886 to 26487 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:17,321 DEBUG Processing 233/850 atomic regions from SNP 69709 to 70309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,340 DEBUG Processing 25/642 atomic regions from SNP 7224 to 7825 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,344 DEBUG Processing 169/1016 atomic regions from SNP 50504 to 51104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,412 DEBUG Processing 235/883 atomic regions from SNP 70434 to 71035 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,522 DEBUG Processing 149/1127 atomic regions from SNP 44418 to 45018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,531 DEBUG Processing 88/363 atomic regions from SNP 26187 to 26788 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:17,551 DEBUG Processing 234/850 atomic regions from SNP 70009 to 70609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,598 DEBUG Processing 26/642 atomic regions from SNP 7525 to 8126 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,625 DEBUG Processing 170/1016 atomic regions from SNP 50804 to 51404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:17,646 DEBUG Processing 236/883 atomic regions from SNP 70735 to 71336 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,786 DEBUG Processing 235/850 atomic regions from SNP 70309 to 70909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:17,786 DEBUG Processing 150/1127 atomic regions from SNP 44718 to 45318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:17,788 DEBUG Processing 89/363 atomic regions from SNP 26488 to 27089 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:17,845 DEBUG Processing 27/642 atomic regions from SNP 7826 to 8427 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:17,880 DEBUG Processing 237/883 atomic regions from SNP 71036 to 71637 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:17,908 DEBUG Processing 171/1016 atomic regions from SNP 51104 to 51704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,025 DEBUG Processing 90/363 atomic regions from SNP 26789 to 27390 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:18,027 DEBUG Processing 236/850 atomic regions from SNP 70609 to 71209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,050 DEBUG Processing 151/1127 atomic regions from SNP 45018 to 45618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,086 DEBUG Processing 28/642 atomic regions from SNP 8127 to 8728 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,114 DEBUG Processing 238/883 atomic regions from SNP 71337 to 71938 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,179 DEBUG Processing 172/1016 atomic regions from SNP 51404 to 52004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,256 DEBUG Processing 91/363 atomic regions from SNP 27090 to 27691 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:18,263 DEBUG Processing 237/850 atomic regions from SNP 70909 to 71509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,316 DEBUG Processing 152/1127 atomic regions from SNP 45318 to 45918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,323 DEBUG Processing 29/642 atomic regions from SNP 8428 to 9029 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,354 DEBUG Processing 239/883 atomic regions from SNP 71638 to 72239 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,460 DEBUG Processing 173/1016 atomic regions from SNP 51704 to 52304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,484 DEBUG Processing 92/363 atomic regions from SNP 27391 to 27992 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:18,496 DEBUG Processing 238/850 atomic regions from SNP 71209 to 71809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,566 DEBUG Processing 30/642 atomic regions from SNP 8729 to 9330 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,593 DEBUG Processing 153/1127 atomic regions from SNP 45618 to 46218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,596 DEBUG Processing 240/883 atomic regions from SNP 71939 to 72540 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,707 DEBUG Processing 93/363 atomic regions from SNP 27692 to 28293 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:18,724 DEBUG Processing 239/850 atomic regions from SNP 71509 to 72109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:18,745 DEBUG Processing 174/1016 atomic regions from SNP 52004 to 52604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:18,803 DEBUG Processing 31/642 atomic regions from SNP 9030 to 9631 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:18,835 DEBUG Processing 241/883 atomic regions from SNP 72240 to 72841 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:18,857 DEBUG Processing 154/1127 atomic regions from SNP 45918 to 46518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:18,927 DEBUG Processing 94/363 atomic regions from SNP 27993 to 28594 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:18,952 DEBUG Processing 240/850 atomic regions from SNP 71809 to 72409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,032 DEBUG Processing 175/1016 atomic regions from SNP 52304 to 52904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,040 DEBUG Processing 32/642 atomic regions from SNP 9331 to 9932 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,074 DEBUG Processing 242/883 atomic regions from SNP 72541 to 73142 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,121 DEBUG Processing 155/1127 atomic regions from SNP 46218 to 46818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,152 DEBUG Processing 95/363 atomic regions from SNP 28294 to 28895 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:19,181 DEBUG Processing 241/850 atomic regions from SNP 72109 to 72709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,283 DEBUG Processing 33/642 atomic regions from SNP 9632 to 10233 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,315 DEBUG Processing 243/883 atomic regions from SNP 72842 to 73443 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,325 DEBUG Processing 176/1016 atomic regions from SNP 52604 to 53204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,384 DEBUG Processing 96/363 atomic regions from SNP 28595 to 29196 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:19,385 DEBUG Processing 156/1127 atomic regions from SNP 46518 to 47118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,415 DEBUG Processing 242/850 atomic regions from SNP 72409 to 73009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,543 DEBUG Processing 34/642 atomic regions from SNP 9933 to 10534 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,554 DEBUG Processing 244/883 atomic regions from SNP 73143 to 73744 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,621 DEBUG Processing 177/1016 atomic regions from SNP 52904 to 53504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,642 DEBUG Processing 97/363 atomic regions from SNP 28896 to 29497 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:19,646 DEBUG Processing 243/850 atomic regions from SNP 72709 to 73309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,665 DEBUG Processing 157/1127 atomic regions from SNP 46818 to 47418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:19,773 DEBUG Processing 35/642 atomic regions from SNP 10234 to 10835 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:19,790 DEBUG Processing 245/883 atomic regions from SNP 73444 to 74045 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:19,880 DEBUG Processing 244/850 atomic regions from SNP 73009 to 73609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:19,895 DEBUG Processing 98/363 atomic regions from SNP 29197 to 29798 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:19,917 DEBUG Processing 178/1016 atomic regions from SNP 53204 to 53804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:19,933 DEBUG Processing 158/1127 atomic regions from SNP 47118 to 47718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,004 DEBUG Processing 36/642 atomic regions from SNP 10535 to 11136 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,025 DEBUG Processing 246/883 atomic regions from SNP 73745 to 74346 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,113 DEBUG Processing 245/850 atomic regions from SNP 73309 to 73909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,155 DEBUG Processing 99/363 atomic regions from SNP 29498 to 30099 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:20,194 DEBUG Processing 179/1016 atomic regions from SNP 53504 to 54104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,200 DEBUG Processing 159/1127 atomic regions from SNP 47418 to 48018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,236 DEBUG Processing 37/642 atomic regions from SNP 10836 to 11437 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,262 DEBUG Processing 247/883 atomic regions from SNP 74046 to 74647 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,347 DEBUG Processing 246/850 atomic regions from SNP 73609 to 74209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,415 DEBUG Processing 100/363 atomic regions from SNP 29799 to 30400 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:20,459 DEBUG Processing 180/1016 atomic regions from SNP 53804 to 54404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,467 DEBUG Processing 160/1127 atomic regions from SNP 47718 to 48318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,472 DEBUG Processing 38/642 atomic regions from SNP 11137 to 11738 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,504 DEBUG Processing 248/883 atomic regions from SNP 74347 to 74948 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,576 DEBUG Processing 247/850 atomic regions from SNP 73909 to 74509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,680 DEBUG Processing 101/363 atomic regions from SNP 30100 to 30701 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:20,710 DEBUG Processing 39/642 atomic regions from SNP 11438 to 12039 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,721 DEBUG Processing 181/1016 atomic regions from SNP 54104 to 54704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,733 DEBUG Processing 161/1127 atomic regions from SNP 48018 to 48618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:20,745 DEBUG Processing 249/883 atomic regions from SNP 74648 to 75249 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:20,810 DEBUG Processing 248/850 atomic regions from SNP 74209 to 74809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:20,951 DEBUG Processing 102/363 atomic regions from SNP 30401 to 31002 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:20,957 DEBUG Processing 40/642 atomic regions from SNP 11739 to 12340 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:20,989 DEBUG Processing 182/1016 atomic regions from SNP 54404 to 55004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:20,994 DEBUG Processing 250/883 atomic regions from SNP 74949 to 75550 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,002 DEBUG Processing 162/1127 atomic regions from SNP 48318 to 48918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,040 DEBUG Processing 249/850 atomic regions from SNP 74509 to 75109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,191 DEBUG Processing 41/642 atomic regions from SNP 12040 to 12641 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,206 DEBUG Processing 103/363 atomic regions from SNP 30702 to 31303 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:21,238 DEBUG Processing 251/883 atomic regions from SNP 75250 to 75851 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,259 DEBUG Processing 183/1016 atomic regions from SNP 54704 to 55304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,272 DEBUG Processing 163/1127 atomic regions from SNP 48618 to 49218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,274 DEBUG Processing 250/850 atomic regions from SNP 74809 to 75409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,423 DEBUG Processing 42/642 atomic regions from SNP 12341 to 12942 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,468 DEBUG Processing 104/363 atomic regions from SNP 31003 to 31604 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:21,479 DEBUG Processing 252/883 atomic regions from SNP 75551 to 76152 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,513 DEBUG Processing 251/850 atomic regions from SNP 75109 to 75709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,542 DEBUG Processing 184/1016 atomic regions from SNP 55004 to 55604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,545 DEBUG Processing 164/1127 atomic regions from SNP 48918 to 49518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,653 DEBUG Processing 43/642 atomic regions from SNP 12642 to 13243 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,709 DEBUG Processing 105/363 atomic regions from SNP 31304 to 31905 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:21,720 DEBUG Processing 253/883 atomic regions from SNP 75852 to 76453 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,753 DEBUG Processing 252/850 atomic regions from SNP 75409 to 76009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:21,818 DEBUG Processing 185/1016 atomic regions from SNP 55304 to 55904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:21,822 DEBUG Processing 165/1127 atomic regions from SNP 49218 to 49818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:21,893 DEBUG Processing 44/642 atomic regions from SNP 12943 to 13544 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:21,942 DEBUG Processing 106/363 atomic regions from SNP 31605 to 32206 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:21,964 DEBUG Processing 254/883 atomic regions from SNP 76153 to 76754 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:21,988 DEBUG Processing 253/850 atomic regions from SNP 75709 to 76309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,080 DEBUG Processing 186/1016 atomic regions from SNP 55604 to 56204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,090 DEBUG Processing 166/1127 atomic regions from SNP 49518 to 50118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,125 DEBUG Processing 45/642 atomic regions from SNP 13244 to 13845 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,180 DEBUG Processing 107/363 atomic regions from SNP 31906 to 32507 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:22,199 DEBUG Processing 255/883 atomic regions from SNP 76454 to 77055 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,218 DEBUG Processing 254/850 atomic regions from SNP 76009 to 76609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,341 DEBUG Processing 187/1016 atomic regions from SNP 55904 to 56504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,360 DEBUG Processing 167/1127 atomic regions from SNP 49818 to 50418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,360 DEBUG Processing 46/642 atomic regions from SNP 13545 to 14146 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,411 DEBUG Processing 108/363 atomic regions from SNP 32207 to 32808 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:22,435 DEBUG Processing 256/883 atomic regions from SNP 76755 to 77356 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,448 DEBUG Processing 255/850 atomic regions from SNP 76309 to 76909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,601 DEBUG Processing 47/642 atomic regions from SNP 13846 to 14447 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,608 DEBUG Processing 188/1016 atomic regions from SNP 56204 to 56804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,636 DEBUG Processing 168/1127 atomic regions from SNP 50118 to 50718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,646 DEBUG Processing 109/363 atomic regions from SNP 32508 to 33109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:22,682 DEBUG Processing 257/883 atomic regions from SNP 77056 to 77657 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:22,690 DEBUG Processing 256/850 atomic regions from SNP 76609 to 77209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,843 DEBUG Processing 48/642 atomic regions from SNP 14147 to 14748 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:22,886 DEBUG Processing 189/1016 atomic regions from SNP 56504 to 57104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:22,905 DEBUG Processing 169/1127 atomic regions from SNP 50418 to 51018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:22,912 DEBUG Processing 110/363 atomic regions from SNP 32809 to 33409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:22,924 DEBUG Processing 257/850 atomic regions from SNP 76909 to 77509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:22,945 DEBUG Processing 258/883 atomic regions from SNP 77357 to 77958 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,073 DEBUG Processing 49/642 atomic regions from SNP 14448 to 15049 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,159 DEBUG Processing 111/363 atomic regions from SNP 33109 to 33709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:23,160 DEBUG Processing 258/850 atomic regions from SNP 77209 to 77809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,166 DEBUG Processing 170/1127 atomic regions from SNP 50718 to 51318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,171 DEBUG Processing 190/1016 atomic regions from SNP 56804 to 57404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,221 DEBUG Processing 259/883 atomic regions from SNP 77658 to 78259 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,301 DEBUG Processing 50/642 atomic regions from SNP 14749 to 15350 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,383 DEBUG Processing 112/363 atomic regions from SNP 33409 to 34009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:23,393 DEBUG Processing 259/850 atomic regions from SNP 77509 to 78109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,428 DEBUG Processing 171/1127 atomic regions from SNP 51018 to 51618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,445 DEBUG Processing 191/1016 atomic regions from SNP 57104 to 57704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,499 DEBUG Processing 260/883 atomic regions from SNP 77959 to 78560 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,536 DEBUG Processing 51/642 atomic regions from SNP 15050 to 15651 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,604 DEBUG Processing 113/363 atomic regions from SNP 33709 to 34309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:23,622 DEBUG Processing 260/850 atomic regions from SNP 77809 to 78409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,692 DEBUG Processing 172/1127 atomic regions from SNP 51318 to 51918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,714 DEBUG Processing 192/1016 atomic regions from SNP 57404 to 58004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:23,771 DEBUG Processing 52/642 atomic regions from SNP 15351 to 15952 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:23,782 DEBUG Processing 261/883 atomic regions from SNP 78260 to 78861 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:23,825 DEBUG Processing 114/363 atomic regions from SNP 34009 to 34609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:23,849 DEBUG Processing 261/850 atomic regions from SNP 78109 to 78709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:23,983 DEBUG Processing 173/1127 atomic regions from SNP 51618 to 52218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:23,996 DEBUG Processing 193/1016 atomic regions from SNP 57704 to 58304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,014 DEBUG Processing 53/642 atomic regions from SNP 15652 to 16253 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,049 DEBUG Processing 115/363 atomic regions from SNP 34309 to 34909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:24,052 DEBUG Processing 262/883 atomic regions from SNP 78561 to 79162 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,076 DEBUG Processing 262/850 atomic regions from SNP 78409 to 79009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,258 DEBUG Processing 54/642 atomic regions from SNP 15953 to 16554 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,264 DEBUG Processing 174/1127 atomic regions from SNP 51918 to 52518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,278 DEBUG Processing 116/363 atomic regions from SNP 34609 to 35209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:24,279 DEBUG Processing 194/1016 atomic regions from SNP 58004 to 58604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,295 DEBUG Processing 263/883 atomic regions from SNP 78862 to 79463 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,309 DEBUG Processing 263/850 atomic regions from SNP 78709 to 79309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,500 DEBUG Processing 55/642 atomic regions from SNP 16254 to 16855 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,511 DEBUG Processing 117/363 atomic regions from SNP 34909 to 35509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:24,536 DEBUG Processing 175/1127 atomic regions from SNP 52218 to 52818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,541 DEBUG Processing 264/883 atomic regions from SNP 79163 to 79764 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,546 DEBUG Processing 264/850 atomic regions from SNP 79009 to 79609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,555 DEBUG Processing 195/1016 atomic regions from SNP 58304 to 58904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,741 DEBUG Processing 56/642 atomic regions from SNP 16555 to 17156 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:24,742 DEBUG Processing 118/363 atomic regions from SNP 35209 to 35809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:24,785 DEBUG Processing 265/850 atomic regions from SNP 79309 to 79909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:24,788 DEBUG Processing 265/883 atomic regions from SNP 79464 to 80065 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:24,807 DEBUG Processing 176/1127 atomic regions from SNP 52518 to 53118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:24,814 DEBUG Processing 196/1016 atomic regions from SNP 58604 to 59204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:24,973 DEBUG Processing 119/363 atomic regions from SNP 35509 to 36109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:24,978 DEBUG Processing 57/642 atomic regions from SNP 16856 to 17457 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,024 DEBUG Processing 266/850 atomic regions from SNP 79609 to 80209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,033 DEBUG Processing 266/883 atomic regions from SNP 79765 to 80366 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,078 DEBUG Processing 197/1016 atomic regions from SNP 58904 to 59504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,098 DEBUG Processing 177/1127 atomic regions from SNP 52818 to 53418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,211 DEBUG Processing 58/642 atomic regions from SNP 17157 to 17758 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,218 DEBUG Processing 120/363 atomic regions from SNP 35809 to 36409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:25,257 DEBUG Processing 267/850 atomic regions from SNP 79909 to 80509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,274 DEBUG Processing 267/883 atomic regions from SNP 80066 to 80667 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,334 DEBUG Processing 198/1016 atomic regions from SNP 59204 to 59804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,382 DEBUG Processing 178/1127 atomic regions from SNP 53118 to 53718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,441 DEBUG Processing 121/363 atomic regions from SNP 36109 to 36709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:25,443 DEBUG Processing 59/642 atomic regions from SNP 17458 to 18059 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,490 DEBUG Processing 268/850 atomic regions from SNP 80209 to 80809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,513 DEBUG Processing 268/883 atomic regions from SNP 80367 to 80968 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,584 DEBUG Processing 199/1016 atomic regions from SNP 59504 to 60104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,661 DEBUG Processing 122/363 atomic regions from SNP 36409 to 37009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:25,666 DEBUG Processing 179/1127 atomic regions from SNP 53418 to 54018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,676 DEBUG Processing 60/642 atomic regions from SNP 17759 to 18360 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,722 DEBUG Processing 269/850 atomic regions from SNP 80509 to 81109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,747 DEBUG Processing 269/883 atomic regions from SNP 80668 to 81269 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:25,834 DEBUG Processing 200/1016 atomic regions from SNP 59804 to 60404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:25,885 DEBUG Processing 123/363 atomic regions from SNP 36709 to 37309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:25,911 DEBUG Processing 61/642 atomic regions from SNP 18060 to 18661 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:25,952 DEBUG Processing 270/850 atomic regions from SNP 80809 to 81409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:25,969 DEBUG Processing 180/1127 atomic regions from SNP 53718 to 54318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:25,984 DEBUG Processing 270/883 atomic regions from SNP 80969 to 81570 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,084 DEBUG Processing 201/1016 atomic regions from SNP 60104 to 60704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,106 DEBUG Processing 124/363 atomic regions from SNP 37009 to 37609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:26,144 DEBUG Processing 62/642 atomic regions from SNP 18361 to 18962 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,184 DEBUG Processing 271/850 atomic regions from SNP 81109 to 81709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,219 DEBUG Processing 271/883 atomic regions from SNP 81270 to 81871 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,239 DEBUG Processing 181/1127 atomic regions from SNP 54018 to 54618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,326 DEBUG Processing 125/363 atomic regions from SNP 37309 to 37909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:26,335 DEBUG Processing 202/1016 atomic regions from SNP 60404 to 61004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,377 DEBUG Processing 63/642 atomic regions from SNP 18662 to 19263 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,416 DEBUG Processing 272/850 atomic regions from SNP 81409 to 82009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,457 DEBUG Processing 272/883 atomic regions from SNP 81571 to 82172 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,503 DEBUG Processing 182/1127 atomic regions from SNP 54318 to 54918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,545 DEBUG Processing 126/363 atomic regions from SNP 37609 to 38209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:26,587 DEBUG Processing 203/1016 atomic regions from SNP 60704 to 61304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,609 DEBUG Processing 64/642 atomic regions from SNP 18963 to 19564 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,650 DEBUG Processing 273/850 atomic regions from SNP 81709 to 82309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,699 DEBUG Processing 273/883 atomic regions from SNP 81872 to 82473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,763 DEBUG Processing 127/363 atomic regions from SNP 37909 to 38509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:26,770 DEBUG Processing 183/1127 atomic regions from SNP 54618 to 55218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:26,838 DEBUG Processing 65/642 atomic regions from SNP 19264 to 19865 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:26,841 DEBUG Processing 204/1016 atomic regions from SNP 61004 to 61604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:26,885 DEBUG Processing 274/850 atomic regions from SNP 82009 to 82609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:26,949 DEBUG Processing 274/883 atomic regions from SNP 82173 to 82773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:26,997 DEBUG Processing 128/363 atomic regions from SNP 38209 to 38809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:27,045 DEBUG Processing 184/1127 atomic regions from SNP 54918 to 55518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,069 DEBUG Processing 66/642 atomic regions from SNP 19565 to 20166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,109 DEBUG Processing 275/850 atomic regions from SNP 82309 to 82909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,111 DEBUG Processing 205/1016 atomic regions from SNP 61304 to 61904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,190 DEBUG Processing 275/883 atomic regions from SNP 82473 to 83073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,231 DEBUG Processing 129/363 atomic regions from SNP 38509 to 39109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:27,300 DEBUG Processing 67/642 atomic regions from SNP 19866 to 20467 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,316 DEBUG Processing 185/1127 atomic regions from SNP 55218 to 55818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,332 DEBUG Processing 276/850 atomic regions from SNP 82609 to 83209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,373 DEBUG Processing 206/1016 atomic regions from SNP 61604 to 62204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,429 DEBUG Processing 276/883 atomic regions from SNP 82773 to 83373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,462 DEBUG Processing 130/363 atomic regions from SNP 38809 to 39409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:27,534 DEBUG Processing 68/642 atomic regions from SNP 20167 to 20768 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,556 DEBUG Processing 277/850 atomic regions from SNP 82909 to 83509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,582 DEBUG Processing 186/1127 atomic regions from SNP 55518 to 56118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,637 DEBUG Processing 207/1016 atomic regions from SNP 61904 to 62504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,666 DEBUG Processing 277/883 atomic regions from SNP 83073 to 83673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,689 DEBUG Processing 131/363 atomic regions from SNP 39109 to 39709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:27,768 DEBUG Processing 69/642 atomic regions from SNP 20468 to 21069 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:27,786 DEBUG Processing 278/850 atomic regions from SNP 83209 to 83809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:27,872 DEBUG Processing 187/1127 atomic regions from SNP 55818 to 56418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:27,904 DEBUG Processing 208/1016 atomic regions from SNP 62204 to 62804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:27,904 DEBUG Processing 278/883 atomic regions from SNP 83373 to 83973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:27,916 DEBUG Processing 132/363 atomic regions from SNP 39409 to 40009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:27,999 DEBUG Processing 70/642 atomic regions from SNP 20769 to 21370 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,014 DEBUG Processing 279/850 atomic regions from SNP 83509 to 84109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,149 DEBUG Processing 133/363 atomic regions from SNP 39709 to 40309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:28,154 DEBUG Processing 279/883 atomic regions from SNP 83673 to 84273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,173 DEBUG Processing 188/1127 atomic regions from SNP 56118 to 56718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,174 DEBUG Processing 209/1016 atomic regions from SNP 62504 to 63104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,240 DEBUG Processing 71/642 atomic regions from SNP 21070 to 21671 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,247 DEBUG Processing 280/850 atomic regions from SNP 83809 to 84409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,382 DEBUG Processing 134/363 atomic regions from SNP 40009 to 40609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:28,411 DEBUG Processing 280/883 atomic regions from SNP 83973 to 84573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,440 DEBUG Processing 210/1016 atomic regions from SNP 62804 to 63404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,474 DEBUG Processing 189/1127 atomic regions from SNP 56418 to 57018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,480 DEBUG Processing 72/642 atomic regions from SNP 21371 to 21972 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,481 DEBUG Processing 281/850 atomic regions from SNP 84109 to 84709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,610 DEBUG Processing 135/363 atomic regions from SNP 40309 to 40909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:28,664 DEBUG Processing 281/883 atomic regions from SNP 84273 to 84873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,703 DEBUG Processing 211/1016 atomic regions from SNP 63104 to 63704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:28,713 DEBUG Processing 282/850 atomic regions from SNP 84409 to 85009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,714 DEBUG Processing 73/642 atomic regions from SNP 21672 to 22273 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,780 DEBUG Processing 190/1127 atomic regions from SNP 56718 to 57318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:28,842 DEBUG Processing 136/363 atomic regions from SNP 40609 to 41209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:28,916 DEBUG Processing 282/883 atomic regions from SNP 84573 to 85173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:28,954 DEBUG Processing 283/850 atomic regions from SNP 84709 to 85309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:28,956 DEBUG Processing 74/642 atomic regions from SNP 21973 to 22574 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:28,969 DEBUG Processing 212/1016 atomic regions from SNP 63404 to 64004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,066 DEBUG Processing 137/363 atomic regions from SNP 40909 to 41509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:29,080 DEBUG Processing 191/1127 atomic regions from SNP 57018 to 57618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,158 DEBUG Processing 283/883 atomic regions from SNP 84873 to 85473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,192 DEBUG Processing 75/642 atomic regions from SNP 22274 to 22875 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,231 DEBUG Processing 284/850 atomic regions from SNP 85009 to 85609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,249 DEBUG Processing 213/1016 atomic regions from SNP 63704 to 64304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,289 DEBUG Processing 138/363 atomic regions from SNP 41209 to 41809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:29,365 DEBUG Processing 192/1127 atomic regions from SNP 57318 to 57918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,395 DEBUG Processing 284/883 atomic regions from SNP 85173 to 85773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,425 DEBUG Processing 76/642 atomic regions from SNP 22575 to 23176 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,478 DEBUG Processing 285/850 atomic regions from SNP 85309 to 85909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,508 DEBUG Processing 214/1016 atomic regions from SNP 64004 to 64604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,512 DEBUG Processing 139/363 atomic regions from SNP 41509 to 42109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:29,635 DEBUG Processing 285/883 atomic regions from SNP 85473 to 86073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,656 DEBUG Processing 193/1127 atomic regions from SNP 57618 to 58218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,661 DEBUG Processing 77/642 atomic regions from SNP 22876 to 23477 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,713 DEBUG Processing 286/850 atomic regions from SNP 85609 to 86209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,734 DEBUG Processing 140/363 atomic regions from SNP 41809 to 42409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:29,787 DEBUG Processing 215/1016 atomic regions from SNP 64304 to 64904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:29,880 DEBUG Processing 286/883 atomic regions from SNP 85773 to 86373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:29,909 DEBUG Processing 78/642 atomic regions from SNP 23177 to 23778 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:29,928 DEBUG Processing 194/1127 atomic regions from SNP 57918 to 58518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:29,957 DEBUG Processing 287/850 atomic regions from SNP 85909 to 86509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:29,966 DEBUG Processing 141/363 atomic regions from SNP 42109 to 42709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:30,049 DEBUG Processing 216/1016 atomic regions from SNP 64604 to 65204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,128 DEBUG Processing 287/883 atomic regions from SNP 86073 to 86673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,153 DEBUG Processing 79/642 atomic regions from SNP 23478 to 24079 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,193 DEBUG Processing 288/850 atomic regions from SNP 86209 to 86809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,193 DEBUG Processing 142/363 atomic regions from SNP 42409 to 43009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:30,209 DEBUG Processing 195/1127 atomic regions from SNP 58218 to 58818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,297 DEBUG Processing 217/1016 atomic regions from SNP 64904 to 65504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,369 DEBUG Processing 288/883 atomic regions from SNP 86373 to 86973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,397 DEBUG Processing 80/642 atomic regions from SNP 23779 to 24380 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,424 DEBUG Processing 143/363 atomic regions from SNP 42709 to 43309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:30,430 DEBUG Processing 289/850 atomic regions from SNP 86509 to 87109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,493 DEBUG Processing 196/1127 atomic regions from SNP 58518 to 59118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,548 DEBUG Processing 218/1016 atomic regions from SNP 65204 to 65804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,612 DEBUG Processing 289/883 atomic regions from SNP 86673 to 87273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,641 DEBUG Processing 81/642 atomic regions from SNP 24080 to 24681 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,657 DEBUG Processing 144/363 atomic regions from SNP 43009 to 43609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:30,670 DEBUG Processing 290/850 atomic regions from SNP 86809 to 87409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:30,760 DEBUG Processing 197/1127 atomic regions from SNP 58818 to 59418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:30,800 DEBUG Processing 219/1016 atomic regions from SNP 65504 to 66104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:30,849 DEBUG Processing 290/883 atomic regions from SNP 86973 to 87573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:30,881 DEBUG Processing 82/642 atomic regions from SNP 24381 to 24982 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:30,889 DEBUG Processing 145/363 atomic regions from SNP 43309 to 43909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:30,910 DEBUG Processing 291/850 atomic regions from SNP 87109 to 87709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,041 DEBUG Processing 198/1127 atomic regions from SNP 59118 to 59718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,058 DEBUG Processing 220/1016 atomic regions from SNP 65804 to 66404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,085 DEBUG Processing 291/883 atomic regions from SNP 87273 to 87873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,116 DEBUG Processing 83/642 atomic regions from SNP 24682 to 25283 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,118 DEBUG Processing 146/363 atomic regions from SNP 43609 to 44209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:31,143 DEBUG Processing 292/850 atomic regions from SNP 87409 to 88009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,316 DEBUG Processing 221/1016 atomic regions from SNP 66104 to 66704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,325 DEBUG Processing 292/883 atomic regions from SNP 87573 to 88173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,340 DEBUG Processing 199/1127 atomic regions from SNP 59418 to 60018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,346 DEBUG Processing 147/363 atomic regions from SNP 43909 to 44509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:31,354 DEBUG Processing 84/642 atomic regions from SNP 24983 to 25584 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,377 DEBUG Processing 293/850 atomic regions from SNP 87709 to 88309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,569 DEBUG Processing 293/883 atomic regions from SNP 87873 to 88473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,575 DEBUG Processing 222/1016 atomic regions from SNP 66404 to 67004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,577 DEBUG Processing 148/363 atomic regions from SNP 44209 to 44809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:31,600 DEBUG Processing 85/642 atomic regions from SNP 25284 to 25885 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,614 DEBUG Processing 294/850 atomic regions from SNP 88009 to 88609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,625 DEBUG Processing 200/1127 atomic regions from SNP 59718 to 60318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:31,808 DEBUG Processing 149/363 atomic regions from SNP 44509 to 45109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:31,816 DEBUG Processing 294/883 atomic regions from SNP 88173 to 88773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:31,831 DEBUG Processing 223/1016 atomic regions from SNP 66704 to 67304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:31,845 DEBUG Processing 86/642 atomic regions from SNP 25585 to 26186 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:31,855 DEBUG Processing 295/850 atomic regions from SNP 88309 to 88909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:31,901 DEBUG Processing 201/1127 atomic regions from SNP 60018 to 60618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,037 DEBUG Processing 150/363 atomic regions from SNP 44809 to 45409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:32,064 DEBUG Processing 295/883 atomic regions from SNP 88473 to 89073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,095 DEBUG Processing 87/642 atomic regions from SNP 25886 to 26487 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,095 DEBUG Processing 224/1016 atomic regions from SNP 67004 to 67604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,102 DEBUG Processing 296/850 atomic regions from SNP 88609 to 89209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,180 DEBUG Processing 202/1127 atomic regions from SNP 60318 to 60918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,263 DEBUG Processing 151/363 atomic regions from SNP 45109 to 45709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:32,309 DEBUG Processing 296/883 atomic regions from SNP 88773 to 89373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,340 DEBUG Processing 88/642 atomic regions from SNP 26187 to 26788 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,342 DEBUG Processing 297/850 atomic regions from SNP 88909 to 89509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,357 DEBUG Processing 225/1016 atomic regions from SNP 67304 to 67904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,449 DEBUG Processing 203/1127 atomic regions from SNP 60618 to 61218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,482 DEBUG Processing 152/363 atomic regions from SNP 45409 to 46009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:32,550 DEBUG Processing 297/883 atomic regions from SNP 89073 to 89673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,585 DEBUG Processing 298/850 atomic regions from SNP 89209 to 89809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,587 DEBUG Processing 89/642 atomic regions from SNP 26488 to 27089 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,625 DEBUG Processing 226/1016 atomic regions from SNP 67604 to 68204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,700 DEBUG Processing 153/363 atomic regions from SNP 45709 to 46309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:32,725 DEBUG Processing 204/1127 atomic regions from SNP 60918 to 61518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:32,787 DEBUG Processing 298/883 atomic regions from SNP 89373 to 89973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:32,823 DEBUG Processing 299/850 atomic regions from SNP 89509 to 90109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:32,847 DEBUG Processing 90/642 atomic regions from SNP 26789 to 27390 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:32,885 DEBUG Processing 227/1016 atomic regions from SNP 67904 to 68504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:32,925 DEBUG Processing 154/363 atomic regions from SNP 46009 to 46609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:33,015 DEBUG Processing 205/1127 atomic regions from SNP 61218 to 61818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,027 DEBUG Processing 299/883 atomic regions from SNP 89673 to 90273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,061 DEBUG Processing 300/850 atomic regions from SNP 89809 to 90409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,106 DEBUG Processing 91/642 atomic regions from SNP 27090 to 27691 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,140 DEBUG Processing 228/1016 atomic regions from SNP 68204 to 68804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,148 DEBUG Processing 155/363 atomic regions from SNP 46309 to 46909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:33,259 DEBUG Processing 300/883 atomic regions from SNP 89973 to 90573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,287 DEBUG Processing 206/1127 atomic regions from SNP 61518 to 62118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,294 DEBUG Processing 301/850 atomic regions from SNP 90109 to 90709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,356 DEBUG Processing 92/642 atomic regions from SNP 27391 to 27992 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,383 DEBUG Processing 156/363 atomic regions from SNP 46609 to 47209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:33,401 DEBUG Processing 229/1016 atomic regions from SNP 68504 to 69104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,494 DEBUG Processing 301/883 atomic regions from SNP 90273 to 90873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,531 DEBUG Processing 302/850 atomic regions from SNP 90409 to 91009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,560 DEBUG Processing 207/1127 atomic regions from SNP 61818 to 62418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,608 DEBUG Processing 93/642 atomic regions from SNP 27692 to 28293 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,619 DEBUG Processing 157/363 atomic regions from SNP 46909 to 47509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:33,666 DEBUG Processing 230/1016 atomic regions from SNP 68804 to 69404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,749 DEBUG Processing 302/883 atomic regions from SNP 90573 to 91173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,762 DEBUG Processing 303/850 atomic regions from SNP 90709 to 91309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:33,851 DEBUG Processing 208/1127 atomic regions from SNP 62118 to 62718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:33,852 DEBUG Processing 158/363 atomic regions from SNP 47209 to 47809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:33,854 DEBUG Processing 94/642 atomic regions from SNP 27993 to 28594 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:33,927 DEBUG Processing 231/1016 atomic regions from SNP 69104 to 69704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:33,980 DEBUG Processing 303/883 atomic regions from SNP 90873 to 91473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:33,992 DEBUG Processing 304/850 atomic regions from SNP 91009 to 91609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,080 DEBUG Processing 159/363 atomic regions from SNP 47509 to 48109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:34,095 DEBUG Processing 95/642 atomic regions from SNP 28294 to 28895 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,152 DEBUG Processing 209/1127 atomic regions from SNP 62418 to 63018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,185 DEBUG Processing 232/1016 atomic regions from SNP 69404 to 70004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,216 DEBUG Processing 304/883 atomic regions from SNP 91173 to 91773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,219 DEBUG Processing 305/850 atomic regions from SNP 91309 to 91909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,307 DEBUG Processing 160/363 atomic regions from SNP 47809 to 48409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:34,335 DEBUG Processing 96/642 atomic regions from SNP 28595 to 29196 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,434 DEBUG Processing 210/1127 atomic regions from SNP 62718 to 63318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,444 DEBUG Processing 233/1016 atomic regions from SNP 69704 to 70304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,449 DEBUG Processing 306/850 atomic regions from SNP 91609 to 92209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,453 DEBUG Processing 305/883 atomic regions from SNP 91473 to 92073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,535 DEBUG Processing 161/363 atomic regions from SNP 48109 to 48709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:34,599 DEBUG Processing 97/642 atomic regions from SNP 28896 to 29497 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,685 DEBUG Processing 307/850 atomic regions from SNP 91909 to 92509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,697 DEBUG Processing 306/883 atomic regions from SNP 91773 to 92373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,703 DEBUG Processing 234/1016 atomic regions from SNP 70004 to 70604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,709 DEBUG Processing 211/1127 atomic regions from SNP 63018 to 63618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,764 DEBUG Processing 162/363 atomic regions from SNP 48409 to 49009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:34,860 DEBUG Processing 98/642 atomic regions from SNP 29197 to 29798 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:34,918 DEBUG Processing 308/850 atomic regions from SNP 92209 to 92809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:34,936 DEBUG Processing 307/883 atomic regions from SNP 92073 to 92673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:34,960 DEBUG Processing 235/1016 atomic regions from SNP 70304 to 70904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:34,972 DEBUG Processing 212/1127 atomic regions from SNP 63318 to 63918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:34,990 DEBUG Processing 163/363 atomic regions from SNP 48709 to 49309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:35,116 DEBUG Processing 99/642 atomic regions from SNP 29498 to 30099 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,150 DEBUG Processing 309/850 atomic regions from SNP 92509 to 93109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,180 DEBUG Processing 308/883 atomic regions from SNP 92373 to 92973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,217 DEBUG Processing 236/1016 atomic regions from SNP 70604 to 71204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,222 DEBUG Processing 164/363 atomic regions from SNP 49009 to 49609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:35,238 DEBUG Processing 213/1127 atomic regions from SNP 63618 to 64218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,358 DEBUG Processing 100/642 atomic regions from SNP 29799 to 30400 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,383 DEBUG Processing 310/850 atomic regions from SNP 92809 to 93409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,420 DEBUG Processing 309/883 atomic regions from SNP 92673 to 93273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,453 DEBUG Processing 165/363 atomic regions from SNP 49309 to 49909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:35,474 DEBUG Processing 237/1016 atomic regions from SNP 70904 to 71504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,509 DEBUG Processing 214/1127 atomic regions from SNP 63918 to 64518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,607 DEBUG Processing 101/642 atomic regions from SNP 30100 to 30701 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,613 DEBUG Processing 311/850 atomic regions from SNP 93109 to 93709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,664 DEBUG Processing 310/883 atomic regions from SNP 92973 to 93573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,685 DEBUG Processing 166/363 atomic regions from SNP 49609 to 50209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:35,735 DEBUG Processing 238/1016 atomic regions from SNP 71204 to 71804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:35,779 DEBUG Processing 215/1127 atomic regions from SNP 64218 to 64818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:35,846 DEBUG Processing 312/850 atomic regions from SNP 93409 to 94009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:35,867 DEBUG Processing 102/642 atomic regions from SNP 30401 to 31002 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:35,904 DEBUG Processing 311/883 atomic regions from SNP 93273 to 93873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:35,916 DEBUG Processing 167/363 atomic regions from SNP 49909 to 50509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:35,994 DEBUG Processing 239/1016 atomic regions from SNP 71504 to 72104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,053 DEBUG Processing 216/1127 atomic regions from SNP 64518 to 65118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,080 DEBUG Processing 313/850 atomic regions from SNP 93709 to 94309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,123 DEBUG Processing 103/642 atomic regions from SNP 30702 to 31303 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,144 DEBUG Processing 168/363 atomic regions from SNP 50209 to 50809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:36,147 DEBUG Processing 312/883 atomic regions from SNP 93573 to 94173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,254 DEBUG Processing 240/1016 atomic regions from SNP 71804 to 72404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,309 DEBUG Processing 314/850 atomic regions from SNP 94009 to 94609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,319 DEBUG Processing 217/1127 atomic regions from SNP 64818 to 65418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,364 DEBUG Processing 104/642 atomic regions from SNP 31003 to 31604 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,373 DEBUG Processing 169/363 atomic regions from SNP 50509 to 51109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:36,392 DEBUG Processing 313/883 atomic regions from SNP 93873 to 94473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,515 DEBUG Processing 241/1016 atomic regions from SNP 72104 to 72704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,541 DEBUG Processing 315/850 atomic regions from SNP 94309 to 94909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,586 DEBUG Processing 218/1127 atomic regions from SNP 65118 to 65718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,604 DEBUG Processing 170/363 atomic regions from SNP 50809 to 51409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:36,609 DEBUG Processing 105/642 atomic regions from SNP 31304 to 31905 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,637 DEBUG Processing 314/883 atomic regions from SNP 94173 to 94773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,768 DEBUG Processing 316/850 atomic regions from SNP 94609 to 95209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:36,774 DEBUG Processing 242/1016 atomic regions from SNP 72404 to 73004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:36,838 DEBUG Processing 171/363 atomic regions from SNP 51109 to 51709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:36,857 DEBUG Processing 106/642 atomic regions from SNP 31605 to 32206 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:36,860 DEBUG Processing 219/1127 atomic regions from SNP 65418 to 66018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:36,887 DEBUG Processing 315/883 atomic regions from SNP 94473 to 95073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:36,996 DEBUG Processing 317/850 atomic regions from SNP 94909 to 95509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,040 DEBUG Processing 243/1016 atomic regions from SNP 72704 to 73304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,065 DEBUG Processing 172/363 atomic regions from SNP 51409 to 52009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:37,104 DEBUG Processing 107/642 atomic regions from SNP 31906 to 32507 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,126 DEBUG Processing 220/1127 atomic regions from SNP 65718 to 66318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,137 DEBUG Processing 316/883 atomic regions from SNP 94773 to 95373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,224 DEBUG Processing 318/850 atomic regions from SNP 95209 to 95809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,286 DEBUG Processing 173/363 atomic regions from SNP 51709 to 52309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:37,307 DEBUG Processing 244/1016 atomic regions from SNP 73004 to 73604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,371 DEBUG Processing 108/642 atomic regions from SNP 32207 to 32808 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,386 DEBUG Processing 317/883 atomic regions from SNP 95073 to 95673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,392 DEBUG Processing 221/1127 atomic regions from SNP 66018 to 66618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,457 DEBUG Processing 319/850 atomic regions from SNP 95509 to 96109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,506 DEBUG Processing 174/363 atomic regions from SNP 52009 to 52609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:37,576 DEBUG Processing 245/1016 atomic regions from SNP 73304 to 73904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,629 DEBUG Processing 109/642 atomic regions from SNP 32508 to 33109 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,633 DEBUG Processing 318/883 atomic regions from SNP 95373 to 95973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,660 DEBUG Processing 222/1127 atomic regions from SNP 66318 to 66918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,695 DEBUG Processing 320/850 atomic regions from SNP 95809 to 96409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,727 DEBUG Processing 175/363 atomic regions from SNP 52309 to 52909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:37,842 DEBUG Processing 246/1016 atomic regions from SNP 73604 to 74204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:37,872 DEBUG Processing 110/642 atomic regions from SNP 32809 to 33410 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:37,880 DEBUG Processing 319/883 atomic regions from SNP 95673 to 96273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:37,931 DEBUG Processing 223/1127 atomic regions from SNP 66618 to 67218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:37,935 DEBUG Processing 321/850 atomic regions from SNP 96109 to 96709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:37,955 DEBUG Processing 176/363 atomic regions from SNP 52609 to 53209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:38,107 DEBUG Processing 247/1016 atomic regions from SNP 73904 to 74504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,120 DEBUG Processing 111/642 atomic regions from SNP 33110 to 33711 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,128 DEBUG Processing 320/883 atomic regions from SNP 95973 to 96573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,176 DEBUG Processing 322/850 atomic regions from SNP 96409 to 97009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,187 DEBUG Processing 177/363 atomic regions from SNP 52909 to 53509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:38,217 DEBUG Processing 224/1127 atomic regions from SNP 66918 to 67518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,365 DEBUG Processing 112/642 atomic regions from SNP 33411 to 34012 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,370 DEBUG Processing 248/1016 atomic regions from SNP 74204 to 74804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,375 DEBUG Processing 321/883 atomic regions from SNP 96273 to 96873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,417 DEBUG Processing 323/850 atomic regions from SNP 96709 to 97309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,419 DEBUG Processing 178/363 atomic regions from SNP 53209 to 53809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:38,492 DEBUG Processing 225/1127 atomic regions from SNP 67218 to 67818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,617 DEBUG Processing 113/642 atomic regions from SNP 33712 to 34313 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,629 DEBUG Processing 322/883 atomic regions from SNP 96573 to 97173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,653 DEBUG Processing 249/1016 atomic regions from SNP 74504 to 75104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:38,656 DEBUG Processing 179/363 atomic regions from SNP 53509 to 54109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:38,661 DEBUG Processing 324/850 atomic regions from SNP 97009 to 97609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,766 DEBUG Processing 226/1127 atomic regions from SNP 67518 to 68118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:38,866 DEBUG Processing 114/642 atomic regions from SNP 34013 to 34614 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:38,883 DEBUG Processing 323/883 atomic regions from SNP 96873 to 97473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:38,892 DEBUG Processing 180/363 atomic regions from SNP 53809 to 54409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:38,906 DEBUG Processing 325/850 atomic regions from SNP 97309 to 97909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:38,941 DEBUG Processing 250/1016 atomic regions from SNP 74804 to 75404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,033 DEBUG Processing 227/1127 atomic regions from SNP 67818 to 68418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,112 DEBUG Processing 115/642 atomic regions from SNP 34314 to 34915 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,127 DEBUG Processing 181/363 atomic regions from SNP 54109 to 54709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:39,132 DEBUG Processing 324/883 atomic regions from SNP 97173 to 97773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,148 DEBUG Processing 326/850 atomic regions from SNP 97609 to 98209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,207 DEBUG Processing 251/1016 atomic regions from SNP 75104 to 75704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,301 DEBUG Processing 228/1127 atomic regions from SNP 68118 to 68718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,355 DEBUG Processing 116/642 atomic regions from SNP 34615 to 35216 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,359 DEBUG Processing 182/363 atomic regions from SNP 54409 to 55009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:39,379 DEBUG Processing 325/883 atomic regions from SNP 97473 to 98073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,387 DEBUG Processing 327/850 atomic regions from SNP 97909 to 98509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,471 DEBUG Processing 252/1016 atomic regions from SNP 75404 to 76004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,566 DEBUG Processing 229/1127 atomic regions from SNP 68418 to 69018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,590 DEBUG Processing 183/363 atomic regions from SNP 54709 to 55309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:39,603 DEBUG Processing 117/642 atomic regions from SNP 34916 to 35517 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,627 DEBUG Processing 326/883 atomic regions from SNP 97773 to 98373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:39,628 DEBUG Processing 328/850 atomic regions from SNP 98209 to 98809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,740 DEBUG Processing 253/1016 atomic regions from SNP 75704 to 76304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:39,825 DEBUG Processing 184/363 atomic regions from SNP 55009 to 55609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:39,841 DEBUG Processing 230/1127 atomic regions from SNP 68718 to 69318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:39,850 DEBUG Processing 118/642 atomic regions from SNP 35217 to 35818 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:39,869 DEBUG Processing 329/850 atomic regions from SNP 98509 to 99109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:39,877 DEBUG Processing 327/883 atomic regions from SNP 98073 to 98673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,003 DEBUG Processing 254/1016 atomic regions from SNP 76004 to 76604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,063 DEBUG Processing 185/363 atomic regions from SNP 55309 to 55909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:40,107 DEBUG Processing 119/642 atomic regions from SNP 35518 to 36119 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,120 DEBUG Processing 330/850 atomic regions from SNP 98809 to 99409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,124 DEBUG Processing 231/1127 atomic regions from SNP 69018 to 69618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,137 DEBUG Processing 328/883 atomic regions from SNP 98373 to 98973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,260 DEBUG Processing 255/1016 atomic regions from SNP 76304 to 76904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,286 DEBUG Processing 186/363 atomic regions from SNP 55609 to 56209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:40,362 DEBUG Processing 120/642 atomic regions from SNP 35819 to 36420 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,364 DEBUG Processing 331/850 atomic regions from SNP 99109 to 99709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,389 DEBUG Processing 329/883 atomic regions from SNP 98673 to 99273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,398 DEBUG Processing 232/1127 atomic regions from SNP 69318 to 69918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,507 DEBUG Processing 187/363 atomic regions from SNP 55909 to 56509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:40,515 DEBUG Processing 256/1016 atomic regions from SNP 76604 to 77204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,606 DEBUG Processing 332/850 atomic regions from SNP 99409 to 100009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,608 DEBUG Processing 121/642 atomic regions from SNP 36120 to 36721 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,640 DEBUG Processing 330/883 atomic regions from SNP 98973 to 99573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,675 DEBUG Processing 233/1127 atomic regions from SNP 69618 to 70218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,728 DEBUG Processing 188/363 atomic regions from SNP 56209 to 56809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:40,774 DEBUG Processing 257/1016 atomic regions from SNP 76904 to 77504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:40,847 DEBUG Processing 333/850 atomic regions from SNP 99709 to 100309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:40,852 DEBUG Processing 122/642 atomic regions from SNP 36421 to 37022 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:40,892 DEBUG Processing 331/883 atomic regions from SNP 99273 to 99873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:40,952 DEBUG Processing 234/1127 atomic regions from SNP 69918 to 70518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:40,958 DEBUG Processing 189/363 atomic regions from SNP 56509 to 57109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:41,033 DEBUG Processing 258/1016 atomic regions from SNP 77204 to 77804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,084 DEBUG Processing 334/850 atomic regions from SNP 100009 to 100609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,095 DEBUG Processing 123/642 atomic regions from SNP 36722 to 37323 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,146 DEBUG Processing 332/883 atomic regions from SNP 99573 to 100173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,190 DEBUG Processing 190/363 atomic regions from SNP 56809 to 57409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:41,222 DEBUG Processing 235/1127 atomic regions from SNP 70218 to 70818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,293 DEBUG Processing 259/1016 atomic regions from SNP 77504 to 78104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,317 DEBUG Processing 335/850 atomic regions from SNP 100309 to 100909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,335 DEBUG Processing 124/642 atomic regions from SNP 37023 to 37624 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,411 DEBUG Processing 333/883 atomic regions from SNP 99873 to 100473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,425 DEBUG Processing 191/363 atomic regions from SNP 57109 to 57709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:41,487 DEBUG Processing 236/1127 atomic regions from SNP 70518 to 71118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,544 DEBUG Processing 336/850 atomic regions from SNP 100609 to 101209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,545 DEBUG Processing 260/1016 atomic regions from SNP 77804 to 78404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,569 DEBUG Processing 125/642 atomic regions from SNP 37324 to 37925 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,653 DEBUG Processing 334/883 atomic regions from SNP 100173 to 100773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:41,655 DEBUG Processing 192/363 atomic regions from SNP 57409 to 58009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:41,775 DEBUG Processing 237/1127 atomic regions from SNP 70818 to 71418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:41,777 DEBUG Processing 337/850 atomic regions from SNP 100909 to 101509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:41,802 DEBUG Processing 261/1016 atomic regions from SNP 78104 to 78704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:41,806 DEBUG Processing 126/642 atomic regions from SNP 37625 to 38226 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:41,885 DEBUG Processing 193/363 atomic regions from SNP 57709 to 58309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:41,899 DEBUG Processing 335/883 atomic regions from SNP 100473 to 101073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,009 DEBUG Processing 338/850 atomic regions from SNP 101209 to 101809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,045 DEBUG Processing 127/642 atomic regions from SNP 37926 to 38527 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,062 DEBUG Processing 262/1016 atomic regions from SNP 78404 to 79004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,068 DEBUG Processing 238/1127 atomic regions from SNP 71118 to 71718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,124 DEBUG Processing 194/363 atomic regions from SNP 58009 to 58609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:42,147 DEBUG Processing 336/883 atomic regions from SNP 100773 to 101373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,244 DEBUG Processing 339/850 atomic regions from SNP 101509 to 102109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,287 DEBUG Processing 128/642 atomic regions from SNP 38227 to 38828 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,324 DEBUG Processing 263/1016 atomic regions from SNP 78704 to 79304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,341 DEBUG Processing 239/1127 atomic regions from SNP 71418 to 72018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,379 DEBUG Processing 195/363 atomic regions from SNP 58309 to 58909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:42,395 DEBUG Processing 337/883 atomic regions from SNP 101073 to 101673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,477 DEBUG Processing 340/850 atomic regions from SNP 101809 to 102409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,530 DEBUG Processing 129/642 atomic regions from SNP 38528 to 39129 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,595 DEBUG Processing 264/1016 atomic regions from SNP 79004 to 79604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,617 DEBUG Processing 196/363 atomic regions from SNP 58609 to 59209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:42,619 DEBUG Processing 240/1127 atomic regions from SNP 71718 to 72318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,648 DEBUG Processing 338/883 atomic regions from SNP 101373 to 101973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,713 DEBUG Processing 341/850 atomic regions from SNP 102109 to 102709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:42,771 DEBUG Processing 130/642 atomic regions from SNP 38829 to 39430 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:42,874 DEBUG Processing 265/1016 atomic regions from SNP 79304 to 79904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:42,890 DEBUG Processing 197/363 atomic regions from SNP 58909 to 59509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:42,909 DEBUG Processing 241/1127 atomic regions from SNP 72018 to 72618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:42,911 DEBUG Processing 339/883 atomic regions from SNP 101673 to 102273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:42,961 DEBUG Processing 342/850 atomic regions from SNP 102409 to 103009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,014 DEBUG Processing 131/642 atomic regions from SNP 39130 to 39731 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,137 DEBUG Processing 198/363 atomic regions from SNP 59209 to 59809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:43,142 DEBUG Processing 266/1016 atomic regions from SNP 79604 to 80204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,159 DEBUG Processing 340/883 atomic regions from SNP 101973 to 102573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,183 DEBUG Processing 242/1127 atomic regions from SNP 72318 to 72918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,203 DEBUG Processing 343/850 atomic regions from SNP 102709 to 103309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,257 DEBUG Processing 132/642 atomic regions from SNP 39431 to 40032 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,370 DEBUG Processing 199/363 atomic regions from SNP 59509 to 60109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:43,405 DEBUG Processing 341/883 atomic regions from SNP 102273 to 102873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,407 DEBUG Processing 267/1016 atomic regions from SNP 79904 to 80504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,445 DEBUG Processing 344/850 atomic regions from SNP 103009 to 103609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,456 DEBUG Processing 243/1127 atomic regions from SNP 72618 to 73218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,497 DEBUG Processing 133/642 atomic regions from SNP 39732 to 40333 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,596 DEBUG Processing 200/363 atomic regions from SNP 59809 to 60409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:43,652 DEBUG Processing 342/883 atomic regions from SNP 102573 to 103173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,672 DEBUG Processing 268/1016 atomic regions from SNP 80204 to 80804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,688 DEBUG Processing 345/850 atomic regions from SNP 103309 to 103909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,729 DEBUG Processing 244/1127 atomic regions from SNP 72918 to 73518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:43,741 DEBUG Processing 134/642 atomic regions from SNP 40033 to 40634 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:43,824 DEBUG Processing 201/363 atomic regions from SNP 60109 to 60709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:43,919 DEBUG Processing 343/883 atomic regions from SNP 102873 to 103473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:43,928 DEBUG Processing 346/850 atomic regions from SNP 103609 to 104209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:43,937 DEBUG Processing 269/1016 atomic regions from SNP 80504 to 81104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:43,997 DEBUG Processing 135/642 atomic regions from SNP 40334 to 40935 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,001 DEBUG Processing 245/1127 atomic regions from SNP 73218 to 73818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,051 DEBUG Processing 202/363 atomic regions from SNP 60409 to 61009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:44,165 DEBUG Processing 347/850 atomic regions from SNP 103909 to 104509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,181 DEBUG Processing 344/883 atomic regions from SNP 103173 to 103773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,203 DEBUG Processing 270/1016 atomic regions from SNP 80804 to 81404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,245 DEBUG Processing 136/642 atomic regions from SNP 40635 to 41236 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,271 DEBUG Processing 246/1127 atomic regions from SNP 73518 to 74118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,283 DEBUG Processing 203/363 atomic regions from SNP 60709 to 61309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:44,410 DEBUG Processing 348/850 atomic regions from SNP 104209 to 104809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,425 DEBUG Processing 345/883 atomic regions from SNP 103473 to 104073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,470 DEBUG Processing 271/1016 atomic regions from SNP 81104 to 81704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,491 DEBUG Processing 137/642 atomic regions from SNP 40936 to 41537 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,515 DEBUG Processing 204/363 atomic regions from SNP 61009 to 61609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:44,543 DEBUG Processing 247/1127 atomic regions from SNP 73818 to 74418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,670 DEBUG Processing 346/883 atomic regions from SNP 103773 to 104373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,673 DEBUG Processing 349/850 atomic regions from SNP 104509 to 105109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,736 DEBUG Processing 138/642 atomic regions from SNP 41237 to 41838 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:44,738 DEBUG Processing 272/1016 atomic regions from SNP 81404 to 82004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:44,746 DEBUG Processing 205/363 atomic regions from SNP 61309 to 61909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:44,815 DEBUG Processing 248/1127 atomic regions from SNP 74118 to 74718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:44,919 DEBUG Processing 347/883 atomic regions from SNP 104073 to 104673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:44,937 DEBUG Processing 350/850 atomic regions from SNP 104809 to 105409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:44,977 DEBUG Processing 206/363 atomic regions from SNP 61609 to 62209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:44,981 DEBUG Processing 139/642 atomic regions from SNP 41538 to 42139 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,007 DEBUG Processing 273/1016 atomic regions from SNP 81704 to 82304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,084 DEBUG Processing 249/1127 atomic regions from SNP 74418 to 75018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,168 DEBUG Processing 348/883 atomic regions from SNP 104373 to 104973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,200 DEBUG Processing 351/850 atomic regions from SNP 105109 to 105709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,222 DEBUG Processing 207/363 atomic regions from SNP 61909 to 62509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:45,230 DEBUG Processing 140/642 atomic regions from SNP 41839 to 42440 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,274 DEBUG Processing 274/1016 atomic regions from SNP 82004 to 82604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,352 DEBUG Processing 250/1127 atomic regions from SNP 74718 to 75318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,419 DEBUG Processing 349/883 atomic regions from SNP 104673 to 105273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,444 DEBUG Processing 352/850 atomic regions from SNP 105409 to 106009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,479 DEBUG Processing 208/363 atomic regions from SNP 62209 to 62809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:45,480 DEBUG Processing 141/642 atomic regions from SNP 42140 to 42741 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,541 DEBUG Processing 275/1016 atomic regions from SNP 82304 to 82904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,624 DEBUG Processing 251/1127 atomic regions from SNP 75018 to 75618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,666 DEBUG Processing 350/883 atomic regions from SNP 104973 to 105573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,689 DEBUG Processing 353/850 atomic regions from SNP 105709 to 106309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,729 DEBUG Processing 142/642 atomic regions from SNP 42441 to 43042 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:45,740 DEBUG Processing 209/363 atomic regions from SNP 62509 to 63109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:45,809 DEBUG Processing 276/1016 atomic regions from SNP 82604 to 83204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:45,896 DEBUG Processing 252/1127 atomic regions from SNP 75318 to 75918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:45,909 DEBUG Processing 351/883 atomic regions from SNP 105273 to 105873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:45,938 DEBUG Processing 354/850 atomic regions from SNP 106009 to 106609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:45,976 DEBUG Processing 143/642 atomic regions from SNP 42742 to 43343 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,004 DEBUG Processing 210/363 atomic regions from SNP 62809 to 63409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:46,075 DEBUG Processing 277/1016 atomic regions from SNP 82904 to 83504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,157 DEBUG Processing 352/883 atomic regions from SNP 105573 to 106173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,171 DEBUG Processing 253/1127 atomic regions from SNP 75618 to 76218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,179 DEBUG Processing 355/850 atomic regions from SNP 106309 to 106909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,225 DEBUG Processing 144/642 atomic regions from SNP 43043 to 43644 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,246 DEBUG Processing 211/363 atomic regions from SNP 63109 to 63709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:46,338 DEBUG Processing 278/1016 atomic regions from SNP 83204 to 83804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,416 DEBUG Processing 356/850 atomic regions from SNP 106609 to 107209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,417 DEBUG Processing 353/883 atomic regions from SNP 105873 to 106473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,447 DEBUG Processing 254/1127 atomic regions from SNP 75918 to 76518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,468 DEBUG Processing 145/642 atomic regions from SNP 43344 to 43945 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,480 DEBUG Processing 212/363 atomic regions from SNP 63409 to 64009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:46,605 DEBUG Processing 279/1016 atomic regions from SNP 83504 to 84104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,654 DEBUG Processing 357/850 atomic regions from SNP 106909 to 107509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,664 DEBUG Processing 354/883 atomic regions from SNP 106173 to 106773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,712 DEBUG Processing 146/642 atomic regions from SNP 43645 to 44246 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,729 DEBUG Processing 255/1127 atomic regions from SNP 76218 to 76818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:46,731 DEBUG Processing 213/363 atomic regions from SNP 63709 to 64309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:46,865 DEBUG Processing 280/1016 atomic regions from SNP 83804 to 84404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:46,899 DEBUG Processing 358/850 atomic regions from SNP 107209 to 107809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:46,916 DEBUG Processing 355/883 atomic regions from SNP 106473 to 107073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:46,959 DEBUG Processing 147/642 atomic regions from SNP 43946 to 44547 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:46,969 DEBUG Processing 214/363 atomic regions from SNP 64009 to 64609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:47,012 DEBUG Processing 256/1127 atomic regions from SNP 76518 to 77118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,120 DEBUG Processing 281/1016 atomic regions from SNP 84104 to 84704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,145 DEBUG Processing 359/850 atomic regions from SNP 107509 to 108109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,170 DEBUG Processing 356/883 atomic regions from SNP 106773 to 107373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,206 DEBUG Processing 215/363 atomic regions from SNP 64309 to 64909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:47,211 DEBUG Processing 148/642 atomic regions from SNP 44247 to 44848 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,294 DEBUG Processing 257/1127 atomic regions from SNP 76818 to 77418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,378 DEBUG Processing 282/1016 atomic regions from SNP 84404 to 85004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,425 DEBUG Processing 360/850 atomic regions from SNP 107809 to 108409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,427 DEBUG Processing 357/883 atomic regions from SNP 107073 to 107673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,449 DEBUG Processing 216/363 atomic regions from SNP 64609 to 65209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:47,465 DEBUG Processing 149/642 atomic regions from SNP 44548 to 45149 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,573 DEBUG Processing 258/1127 atomic regions from SNP 77118 to 77718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,647 DEBUG Processing 283/1016 atomic regions from SNP 84704 to 85304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,687 DEBUG Processing 361/850 atomic regions from SNP 108109 to 108709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,689 DEBUG Processing 358/883 atomic regions from SNP 107373 to 107973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,697 DEBUG Processing 217/363 atomic regions from SNP 64909 to 65509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:47,720 DEBUG Processing 150/642 atomic regions from SNP 44849 to 45450 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:47,845 DEBUG Processing 259/1127 atomic regions from SNP 77418 to 78018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:47,911 DEBUG Processing 284/1016 atomic regions from SNP 85004 to 85604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:47,937 DEBUG Processing 362/850 atomic regions from SNP 108409 to 109009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:47,948 DEBUG Processing 359/883 atomic regions from SNP 107673 to 108273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:47,957 DEBUG Processing 218/363 atomic regions from SNP 65209 to 65809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:47,977 DEBUG Processing 151/642 atomic regions from SNP 45150 to 45751 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,124 DEBUG Processing 260/1127 atomic regions from SNP 77718 to 78318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,179 DEBUG Processing 285/1016 atomic regions from SNP 85304 to 85904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,192 DEBUG Processing 363/850 atomic regions from SNP 108709 to 109309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,204 DEBUG Processing 360/883 atomic regions from SNP 107973 to 108573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,228 DEBUG Processing 219/363 atomic regions from SNP 65509 to 66109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:48,234 DEBUG Processing 152/642 atomic regions from SNP 45451 to 46052 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,394 DEBUG Processing 261/1127 atomic regions from SNP 78018 to 78618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,446 DEBUG Processing 364/850 atomic regions from SNP 109009 to 109609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,452 DEBUG Processing 286/1016 atomic regions from SNP 85604 to 86204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,470 DEBUG Processing 220/363 atomic regions from SNP 65809 to 66409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:48,475 DEBUG Processing 361/883 atomic regions from SNP 108273 to 108873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,487 DEBUG Processing 153/642 atomic regions from SNP 45752 to 46353 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,663 DEBUG Processing 262/1127 atomic regions from SNP 78318 to 78918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,680 DEBUG Processing 365/850 atomic regions from SNP 109309 to 109909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,704 DEBUG Processing 221/363 atomic regions from SNP 66109 to 66709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:48,723 DEBUG Processing 287/1016 atomic regions from SNP 85904 to 86504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:48,737 DEBUG Processing 154/642 atomic regions from SNP 46053 to 46654 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,741 DEBUG Processing 362/883 atomic regions from SNP 108573 to 109173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:48,918 DEBUG Processing 366/850 atomic regions from SNP 109609 to 110209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:48,935 DEBUG Processing 263/1127 atomic regions from SNP 78618 to 79218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:48,937 DEBUG Processing 222/363 atomic regions from SNP 66409 to 67009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:48,986 DEBUG Processing 155/642 atomic regions from SNP 46354 to 46955 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:48,998 DEBUG Processing 288/1016 atomic regions from SNP 86204 to 86804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,016 DEBUG Processing 363/883 atomic regions from SNP 108873 to 109473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,157 DEBUG Processing 367/850 atomic regions from SNP 109909 to 110509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,169 DEBUG Processing 223/363 atomic regions from SNP 66709 to 67309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:49,200 DEBUG Processing 264/1127 atomic regions from SNP 78918 to 79518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,231 DEBUG Processing 156/642 atomic regions from SNP 46655 to 47256 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,266 DEBUG Processing 289/1016 atomic regions from SNP 86504 to 87104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,280 DEBUG Processing 364/883 atomic regions from SNP 109173 to 109773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,400 DEBUG Processing 224/363 atomic regions from SNP 67009 to 67609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:49,401 DEBUG Processing 368/850 atomic regions from SNP 110209 to 110809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,468 DEBUG Processing 265/1127 atomic regions from SNP 79218 to 79818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,478 DEBUG Processing 157/642 atomic regions from SNP 46956 to 47557 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,531 DEBUG Processing 365/883 atomic regions from SNP 109473 to 110073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,534 DEBUG Processing 290/1016 atomic regions from SNP 86804 to 87404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,631 DEBUG Processing 225/363 atomic regions from SNP 67309 to 67909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:49,640 DEBUG Processing 369/850 atomic regions from SNP 110509 to 111109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,726 DEBUG Processing 158/642 atomic regions from SNP 47257 to 47858 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:49,737 DEBUG Processing 266/1127 atomic regions from SNP 79518 to 80118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:49,787 DEBUG Processing 366/883 atomic regions from SNP 109773 to 110373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:49,806 DEBUG Processing 291/1016 atomic regions from SNP 87104 to 87704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:49,860 DEBUG Processing 226/363 atomic regions from SNP 67609 to 68209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:49,878 DEBUG Processing 370/850 atomic regions from SNP 110809 to 111409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:49,973 DEBUG Processing 159/642 atomic regions from SNP 47558 to 48159 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,010 DEBUG Processing 267/1127 atomic regions from SNP 79818 to 80418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,048 DEBUG Processing 367/883 atomic regions from SNP 110073 to 110673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,078 DEBUG Processing 292/1016 atomic regions from SNP 87404 to 88004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,103 DEBUG Processing 227/363 atomic regions from SNP 67909 to 68509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:50,126 DEBUG Processing 371/850 atomic regions from SNP 111109 to 111709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,225 DEBUG Processing 160/642 atomic regions from SNP 47859 to 48460 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,299 DEBUG Processing 268/1127 atomic regions from SNP 80118 to 80718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,311 DEBUG Processing 368/883 atomic regions from SNP 110373 to 110973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,342 DEBUG Processing 228/363 atomic regions from SNP 68209 to 68809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:50,350 DEBUG Processing 293/1016 atomic regions from SNP 87704 to 88304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,368 DEBUG Processing 372/850 atomic regions from SNP 111409 to 112009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,465 DEBUG Processing 161/642 atomic regions from SNP 48160 to 48761 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,567 DEBUG Processing 369/883 atomic regions from SNP 110673 to 111273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,577 DEBUG Processing 269/1127 atomic regions from SNP 80418 to 81018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,580 DEBUG Processing 229/363 atomic regions from SNP 68509 to 69109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:50,610 DEBUG Processing 373/850 atomic regions from SNP 111709 to 112309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,620 DEBUG Processing 294/1016 atomic regions from SNP 88004 to 88604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,706 DEBUG Processing 162/642 atomic regions from SNP 48461 to 49062 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:50,823 DEBUG Processing 230/363 atomic regions from SNP 68809 to 69409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:50,825 DEBUG Processing 370/883 atomic regions from SNP 110973 to 111573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:50,858 DEBUG Processing 270/1127 atomic regions from SNP 80718 to 81318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:50,859 DEBUG Processing 374/850 atomic regions from SNP 112009 to 112609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:50,895 DEBUG Processing 295/1016 atomic regions from SNP 88304 to 88904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:50,953 DEBUG Processing 163/642 atomic regions from SNP 48762 to 49363 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,062 DEBUG Processing 231/363 atomic regions from SNP 69109 to 69709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:51,078 DEBUG Processing 371/883 atomic regions from SNP 111273 to 111873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,104 DEBUG Processing 375/850 atomic regions from SNP 112309 to 112909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,142 DEBUG Processing 271/1127 atomic regions from SNP 81018 to 81618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,170 DEBUG Processing 296/1016 atomic regions from SNP 88604 to 89204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,195 DEBUG Processing 164/642 atomic regions from SNP 49063 to 49664 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,307 DEBUG Processing 232/363 atomic regions from SNP 69409 to 70009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:51,332 DEBUG Processing 372/883 atomic regions from SNP 111573 to 112173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,349 DEBUG Processing 376/850 atomic regions from SNP 112609 to 113209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,423 DEBUG Processing 272/1127 atomic regions from SNP 81318 to 81918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,435 DEBUG Processing 165/642 atomic regions from SNP 49364 to 49965 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,442 DEBUG Processing 297/1016 atomic regions from SNP 88904 to 89504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,554 DEBUG Processing 233/363 atomic regions from SNP 69709 to 70309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:51,588 DEBUG Processing 373/883 atomic regions from SNP 111873 to 112473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,596 DEBUG Processing 377/850 atomic regions from SNP 112909 to 113509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,677 DEBUG Processing 166/642 atomic regions from SNP 49665 to 50266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,701 DEBUG Processing 273/1127 atomic regions from SNP 81618 to 82218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,714 DEBUG Processing 298/1016 atomic regions from SNP 89204 to 89804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:51,798 DEBUG Processing 234/363 atomic regions from SNP 70009 to 70609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:51,851 DEBUG Processing 374/883 atomic regions from SNP 112173 to 112773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:51,851 DEBUG Processing 378/850 atomic regions from SNP 113209 to 113809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:51,920 DEBUG Processing 167/642 atomic regions from SNP 49966 to 50566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:51,987 DEBUG Processing 274/1127 atomic regions from SNP 81918 to 82518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:51,992 DEBUG Processing 299/1016 atomic regions from SNP 89504 to 90104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,054 DEBUG Processing 235/363 atomic regions from SNP 70309 to 70909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:52,115 DEBUG Processing 379/850 atomic regions from SNP 113509 to 114109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,126 DEBUG Processing 375/883 atomic regions from SNP 112473 to 113073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,172 DEBUG Processing 168/642 atomic regions from SNP 50266 to 50866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,264 DEBUG Processing 300/1016 atomic regions from SNP 89804 to 90404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,266 DEBUG Processing 275/1127 atomic regions from SNP 82218 to 82818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,297 DEBUG Processing 236/363 atomic regions from SNP 70609 to 71209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:52,365 DEBUG Processing 380/850 atomic regions from SNP 113809 to 114409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,383 DEBUG Processing 376/883 atomic regions from SNP 112773 to 113373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,426 DEBUG Processing 169/642 atomic regions from SNP 50566 to 51166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,535 DEBUG Processing 237/363 atomic regions from SNP 70909 to 71509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:52,536 DEBUG Processing 301/1016 atomic regions from SNP 90104 to 90704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,548 DEBUG Processing 276/1127 atomic regions from SNP 82518 to 83118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,613 DEBUG Processing 381/850 atomic regions from SNP 114109 to 114709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,638 DEBUG Processing 377/883 atomic regions from SNP 113073 to 113673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,676 DEBUG Processing 170/642 atomic regions from SNP 50866 to 51466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:52,788 DEBUG Processing 238/363 atomic regions from SNP 71209 to 71809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:52,809 DEBUG Processing 302/1016 atomic regions from SNP 90404 to 91004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:52,832 DEBUG Processing 277/1127 atomic regions from SNP 82818 to 83418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:52,854 DEBUG Processing 382/850 atomic regions from SNP 114409 to 115009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:52,888 DEBUG Processing 378/883 atomic regions from SNP 113373 to 113973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:52,924 DEBUG Processing 171/642 atomic regions from SNP 51166 to 51766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,028 DEBUG Processing 239/363 atomic regions from SNP 71509 to 72109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:53,081 DEBUG Processing 303/1016 atomic regions from SNP 90704 to 91304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,094 DEBUG Processing 383/850 atomic regions from SNP 114709 to 115309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,111 DEBUG Processing 278/1127 atomic regions from SNP 83118 to 83718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,134 DEBUG Processing 379/883 atomic regions from SNP 113673 to 114273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,168 DEBUG Processing 172/642 atomic regions from SNP 51466 to 52066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,269 DEBUG Processing 240/363 atomic regions from SNP 71809 to 72409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:53,341 DEBUG Processing 384/850 atomic regions from SNP 115009 to 115609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,355 DEBUG Processing 304/1016 atomic regions from SNP 91004 to 91604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,385 DEBUG Processing 380/883 atomic regions from SNP 113973 to 114573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,391 DEBUG Processing 279/1127 atomic regions from SNP 83418 to 84018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,412 DEBUG Processing 173/642 atomic regions from SNP 51766 to 52366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,512 DEBUG Processing 241/363 atomic regions from SNP 72109 to 72709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:53,595 DEBUG Processing 385/850 atomic regions from SNP 115309 to 115909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,630 DEBUG Processing 305/1016 atomic regions from SNP 91304 to 91904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,639 DEBUG Processing 381/883 atomic regions from SNP 114273 to 114873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,661 DEBUG Processing 174/642 atomic regions from SNP 52066 to 52666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,675 DEBUG Processing 280/1127 atomic regions from SNP 83718 to 84318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,745 DEBUG Processing 242/363 atomic regions from SNP 72409 to 73009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:53,845 DEBUG Processing 386/850 atomic regions from SNP 115609 to 116209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:53,897 DEBUG Processing 382/883 atomic regions from SNP 114573 to 115173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:53,907 DEBUG Processing 306/1016 atomic regions from SNP 91604 to 92204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:53,914 DEBUG Processing 175/642 atomic regions from SNP 52366 to 52966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:53,971 DEBUG Processing 281/1127 atomic regions from SNP 84018 to 84618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:53,973 DEBUG Processing 243/363 atomic regions from SNP 72709 to 73309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:54,093 DEBUG Processing 387/850 atomic regions from SNP 115909 to 116509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,159 DEBUG Processing 383/883 atomic regions from SNP 114873 to 115473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,171 DEBUG Processing 176/642 atomic regions from SNP 52666 to 53266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,186 DEBUG Processing 307/1016 atomic regions from SNP 91904 to 92504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,210 DEBUG Processing 244/363 atomic regions from SNP 73009 to 73609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:54,267 DEBUG Processing 282/1127 atomic regions from SNP 84318 to 84918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,333 DEBUG Processing 388/850 atomic regions from SNP 116209 to 116809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,425 DEBUG Processing 384/883 atomic regions from SNP 115173 to 115773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,435 DEBUG Processing 177/642 atomic regions from SNP 52966 to 53566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,458 DEBUG Processing 245/363 atomic regions from SNP 73309 to 73909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:54,465 DEBUG Processing 308/1016 atomic regions from SNP 92204 to 92804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,546 DEBUG Processing 283/1127 atomic regions from SNP 84618 to 85218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,566 DEBUG Processing 389/850 atomic regions from SNP 116509 to 117109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,690 DEBUG Processing 385/883 atomic regions from SNP 115473 to 116073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,697 DEBUG Processing 178/642 atomic regions from SNP 53266 to 53866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,708 DEBUG Processing 246/363 atomic regions from SNP 73609 to 74209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:54,741 DEBUG Processing 309/1016 atomic regions from SNP 92504 to 93104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:54,795 DEBUG Processing 390/850 atomic regions from SNP 116809 to 117409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:54,821 DEBUG Processing 284/1127 atomic regions from SNP 84918 to 85518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:54,955 DEBUG Processing 386/883 atomic regions from SNP 115773 to 116373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:54,958 DEBUG Processing 179/642 atomic regions from SNP 53566 to 54166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:54,960 DEBUG Processing 247/363 atomic regions from SNP 73909 to 74509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:55,013 DEBUG Processing 310/1016 atomic regions from SNP 92804 to 93404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,036 DEBUG Processing 391/850 atomic regions from SNP 117109 to 117709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,095 DEBUG Processing 285/1127 atomic regions from SNP 85218 to 85818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,220 DEBUG Processing 180/642 atomic regions from SNP 53866 to 54466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,223 DEBUG Processing 387/883 atomic regions from SNP 116073 to 116673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,228 DEBUG Processing 248/363 atomic regions from SNP 74209 to 74809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:55,285 DEBUG Processing 311/1016 atomic regions from SNP 93104 to 93704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,286 DEBUG Processing 392/850 atomic regions from SNP 117409 to 118009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,374 DEBUG Processing 286/1127 atomic regions from SNP 85518 to 86118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,480 DEBUG Processing 181/642 atomic regions from SNP 54166 to 54766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,488 DEBUG Processing 388/883 atomic regions from SNP 116373 to 116973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,512 DEBUG Processing 249/363 atomic regions from SNP 74509 to 75109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:55,546 DEBUG Processing 393/850 atomic regions from SNP 117709 to 118309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,552 DEBUG Processing 312/1016 atomic regions from SNP 93404 to 94004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,657 DEBUG Processing 287/1127 atomic regions from SNP 85818 to 86418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,734 DEBUG Processing 182/642 atomic regions from SNP 54466 to 55066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:55,746 DEBUG Processing 389/883 atomic regions from SNP 116673 to 117273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:55,784 DEBUG Processing 250/363 atomic regions from SNP 74809 to 75409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:55,819 DEBUG Processing 394/850 atomic regions from SNP 118009 to 118609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:55,821 DEBUG Processing 313/1016 atomic regions from SNP 93704 to 94304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:55,940 DEBUG Processing 288/1127 atomic regions from SNP 86118 to 86718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:55,991 DEBUG Processing 183/642 atomic regions from SNP 54766 to 55366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,005 DEBUG Processing 390/883 atomic regions from SNP 116973 to 117573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,041 DEBUG Processing 251/363 atomic regions from SNP 75109 to 75709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:56,080 DEBUG Processing 395/850 atomic regions from SNP 118309 to 118909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,093 DEBUG Processing 314/1016 atomic regions from SNP 94004 to 94604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,219 DEBUG Processing 289/1127 atomic regions from SNP 86418 to 87018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,240 DEBUG Processing 184/642 atomic regions from SNP 55066 to 55666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,259 DEBUG Processing 391/883 atomic regions from SNP 117273 to 117873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,288 DEBUG Processing 252/363 atomic regions from SNP 75409 to 76009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:56,324 DEBUG Processing 396/850 atomic regions from SNP 118609 to 119209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,363 DEBUG Processing 315/1016 atomic regions from SNP 94304 to 94904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,495 DEBUG Processing 185/642 atomic regions from SNP 55366 to 55966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,501 DEBUG Processing 290/1127 atomic regions from SNP 86718 to 87318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,522 DEBUG Processing 392/883 atomic regions from SNP 117573 to 118173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,546 DEBUG Processing 253/363 atomic regions from SNP 75709 to 76309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:56,568 DEBUG Processing 397/850 atomic regions from SNP 118909 to 119509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,634 DEBUG Processing 316/1016 atomic regions from SNP 94604 to 95204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,748 DEBUG Processing 186/642 atomic regions from SNP 55666 to 56266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:56,779 DEBUG Processing 291/1127 atomic regions from SNP 87018 to 87618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:56,782 DEBUG Processing 393/883 atomic regions from SNP 117873 to 118473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:56,824 DEBUG Processing 254/363 atomic regions from SNP 76009 to 76609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:56,833 DEBUG Processing 398/850 atomic regions from SNP 119209 to 119809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:56,909 DEBUG Processing 317/1016 atomic regions from SNP 94904 to 95504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:56,998 DEBUG Processing 187/642 atomic regions from SNP 55966 to 56566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,040 DEBUG Processing 394/883 atomic regions from SNP 118173 to 118773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,059 DEBUG Processing 292/1127 atomic regions from SNP 87318 to 87918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,094 DEBUG Processing 255/363 atomic regions from SNP 76309 to 76909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:57,110 DEBUG Processing 399/850 atomic regions from SNP 119509 to 120109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,210 DEBUG Processing 318/1016 atomic regions from SNP 95204 to 95804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,243 DEBUG Processing 188/642 atomic regions from SNP 56266 to 56866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,300 DEBUG Processing 395/883 atomic regions from SNP 118473 to 119073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,337 DEBUG Processing 293/1127 atomic regions from SNP 87618 to 88218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,341 DEBUG Processing 256/363 atomic regions from SNP 76609 to 77209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:57,356 DEBUG Processing 400/850 atomic regions from SNP 119809 to 120409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,477 DEBUG Processing 319/1016 atomic regions from SNP 95504 to 96104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,485 DEBUG Processing 189/642 atomic regions from SNP 56566 to 57166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,557 DEBUG Processing 396/883 atomic regions from SNP 118773 to 119373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,584 DEBUG Processing 257/363 atomic regions from SNP 76909 to 77509 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:57,606 DEBUG Processing 401/850 atomic regions from SNP 120109 to 120709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,615 DEBUG Processing 294/1127 atomic regions from SNP 87918 to 88518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,725 DEBUG Processing 190/642 atomic regions from SNP 56866 to 57466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:57,740 DEBUG Processing 320/1016 atomic regions from SNP 95804 to 96404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:57,805 DEBUG Processing 397/883 atomic regions from SNP 119073 to 119673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:57,821 DEBUG Processing 258/363 atomic regions from SNP 77209 to 77809 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:57,852 DEBUG Processing 402/850 atomic regions from SNP 120409 to 121009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:57,897 DEBUG Processing 295/1127 atomic regions from SNP 88218 to 88818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:57,972 DEBUG Processing 191/642 atomic regions from SNP 57166 to 57766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,010 DEBUG Processing 321/1016 atomic regions from SNP 96104 to 96704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,055 DEBUG Processing 398/883 atomic regions from SNP 119373 to 119973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,055 DEBUG Processing 259/363 atomic regions from SNP 77509 to 78109 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:58,099 DEBUG Processing 403/850 atomic regions from SNP 120709 to 121309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,173 DEBUG Processing 296/1127 atomic regions from SNP 88518 to 89118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,216 DEBUG Processing 192/642 atomic regions from SNP 57466 to 58066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,283 DEBUG Processing 322/1016 atomic regions from SNP 96404 to 97004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,295 DEBUG Processing 260/363 atomic regions from SNP 77809 to 78409 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:58,307 DEBUG Processing 399/883 atomic regions from SNP 119673 to 120273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,341 DEBUG Processing 404/850 atomic regions from SNP 121009 to 121609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,449 DEBUG Processing 297/1127 atomic regions from SNP 88818 to 89418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,462 DEBUG Processing 193/642 atomic regions from SNP 57766 to 58366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,556 DEBUG Processing 261/363 atomic regions from SNP 78109 to 78709 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:58,562 DEBUG Processing 323/1016 atomic regions from SNP 96704 to 97304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,568 DEBUG Processing 400/883 atomic regions from SNP 119973 to 120573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,590 DEBUG Processing 405/850 atomic regions from SNP 121309 to 121909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,702 DEBUG Processing 194/642 atomic regions from SNP 58066 to 58666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:58,730 DEBUG Processing 298/1127 atomic regions from SNP 89118 to 89718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:58,828 DEBUG Processing 401/883 atomic regions from SNP 120273 to 120873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:58,833 DEBUG Processing 262/363 atomic regions from SNP 78409 to 79009 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:58,840 DEBUG Processing 324/1016 atomic regions from SNP 97004 to 97604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:58,843 DEBUG Processing 406/850 atomic regions from SNP 121609 to 122209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:58,942 DEBUG Processing 195/642 atomic regions from SNP 58366 to 58966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,040 DEBUG Processing 299/1127 atomic regions from SNP 89418 to 90018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,094 DEBUG Processing 402/883 atomic regions from SNP 120573 to 121173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,102 DEBUG Processing 407/850 atomic regions from SNP 121909 to 122509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,104 DEBUG Processing 263/363 atomic regions from SNP 78709 to 79309 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:59,127 DEBUG Processing 325/1016 atomic regions from SNP 97304 to 97904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,189 DEBUG Processing 196/642 atomic regions from SNP 58666 to 59266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,333 DEBUG Processing 300/1127 atomic regions from SNP 89718 to 90318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,355 DEBUG Processing 264/363 atomic regions from SNP 79009 to 79609 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:59,357 DEBUG Processing 403/883 atomic regions from SNP 120873 to 121473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,360 DEBUG Processing 408/850 atomic regions from SNP 122209 to 122809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,408 DEBUG Processing 326/1016 atomic regions from SNP 97604 to 98204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,435 DEBUG Processing 197/642 atomic regions from SNP 58966 to 59566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,606 DEBUG Processing 265/363 atomic regions from SNP 79309 to 79909 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:59,615 DEBUG Processing 409/850 atomic regions from SNP 122509 to 123109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,616 DEBUG Processing 301/1127 atomic regions from SNP 90018 to 90618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,622 DEBUG Processing 404/883 atomic regions from SNP 121173 to 121773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,690 DEBUG Processing 198/642 atomic regions from SNP 59266 to 59866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,693 DEBUG Processing 327/1016 atomic regions from SNP 97904 to 98504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:44:59,851 DEBUG Processing 266/363 atomic regions from SNP 79609 to 80209 for chrX (subchromosome 5 of 6). 2025-01-31 09:44:59,873 DEBUG Processing 410/850 atomic regions from SNP 122809 to 123409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:44:59,888 DEBUG Processing 405/883 atomic regions from SNP 121473 to 122073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:44:59,901 DEBUG Processing 302/1127 atomic regions from SNP 90318 to 90918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:44:59,953 DEBUG Processing 199/642 atomic regions from SNP 59566 to 60166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:44:59,978 DEBUG Processing 328/1016 atomic regions from SNP 98204 to 98804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,093 DEBUG Processing 267/363 atomic regions from SNP 79909 to 80509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:00,123 DEBUG Processing 411/850 atomic regions from SNP 123109 to 123709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,146 DEBUG Processing 406/883 atomic regions from SNP 121773 to 122373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,177 DEBUG Processing 303/1127 atomic regions from SNP 90618 to 91218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,209 DEBUG Processing 200/642 atomic regions from SNP 59866 to 60466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,257 DEBUG Processing 329/1016 atomic regions from SNP 98504 to 99104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,333 DEBUG Processing 268/363 atomic regions from SNP 80209 to 80809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:00,369 DEBUG Processing 412/850 atomic regions from SNP 123409 to 124009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,404 DEBUG Processing 407/883 atomic regions from SNP 122073 to 122673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,457 DEBUG Processing 304/1127 atomic regions from SNP 90918 to 91518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,458 DEBUG Processing 201/642 atomic regions from SNP 60166 to 60766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,524 DEBUG Processing 330/1016 atomic regions from SNP 98804 to 99404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,569 DEBUG Processing 269/363 atomic regions from SNP 80509 to 81109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:00,617 DEBUG Processing 413/850 atomic regions from SNP 123709 to 124309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,659 DEBUG Processing 408/883 atomic regions from SNP 122373 to 122973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,710 DEBUG Processing 202/642 atomic regions from SNP 60466 to 61066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:00,742 DEBUG Processing 305/1127 atomic regions from SNP 91218 to 91818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:00,796 DEBUG Processing 331/1016 atomic regions from SNP 99104 to 99704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:00,809 DEBUG Processing 270/363 atomic regions from SNP 80809 to 81409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:00,871 DEBUG Processing 414/850 atomic regions from SNP 124009 to 124609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:00,921 DEBUG Processing 409/883 atomic regions from SNP 122673 to 123273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:00,966 DEBUG Processing 203/642 atomic regions from SNP 60766 to 61366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,028 DEBUG Processing 306/1127 atomic regions from SNP 91518 to 92118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,057 DEBUG Processing 271/363 atomic regions from SNP 81109 to 81709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:01,088 DEBUG Processing 332/1016 atomic regions from SNP 99404 to 100004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,127 DEBUG Processing 415/850 atomic regions from SNP 124309 to 124909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,182 DEBUG Processing 410/883 atomic regions from SNP 122973 to 123573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,218 DEBUG Processing 204/642 atomic regions from SNP 61066 to 61666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,291 DEBUG Processing 272/363 atomic regions from SNP 81409 to 82009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:01,305 DEBUG Processing 307/1127 atomic regions from SNP 91818 to 92418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,361 DEBUG Processing 333/1016 atomic regions from SNP 99704 to 100304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,389 DEBUG Processing 416/850 atomic regions from SNP 124609 to 125209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,435 DEBUG Processing 411/883 atomic regions from SNP 123273 to 123873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,466 DEBUG Processing 205/642 atomic regions from SNP 61366 to 61966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,519 DEBUG Processing 273/363 atomic regions from SNP 81709 to 82309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:01,582 DEBUG Processing 308/1127 atomic regions from SNP 92118 to 92718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,635 DEBUG Processing 334/1016 atomic regions from SNP 100004 to 100604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,662 DEBUG Processing 417/850 atomic regions from SNP 124909 to 125509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,690 DEBUG Processing 412/883 atomic regions from SNP 123573 to 124173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,716 DEBUG Processing 206/642 atomic regions from SNP 61666 to 62266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,747 DEBUG Processing 274/363 atomic regions from SNP 82009 to 82609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:01,858 DEBUG Processing 309/1127 atomic regions from SNP 92418 to 93018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:01,913 DEBUG Processing 335/1016 atomic regions from SNP 100304 to 100904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:01,925 DEBUG Processing 418/850 atomic regions from SNP 125209 to 125809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:01,951 DEBUG Processing 413/883 atomic regions from SNP 123873 to 124473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:01,973 DEBUG Processing 207/642 atomic regions from SNP 61966 to 62566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:01,986 DEBUG Processing 275/363 atomic regions from SNP 82309 to 82909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:02,135 DEBUG Processing 310/1127 atomic regions from SNP 92718 to 93318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,181 DEBUG Processing 419/850 atomic regions from SNP 125509 to 126109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,212 DEBUG Processing 336/1016 atomic regions from SNP 100604 to 101204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,216 DEBUG Processing 414/883 atomic regions from SNP 124173 to 124773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,233 DEBUG Processing 208/642 atomic regions from SNP 62266 to 62866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,260 DEBUG Processing 276/363 atomic regions from SNP 82609 to 83209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:02,403 DEBUG Processing 311/1127 atomic regions from SNP 93018 to 93618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,426 DEBUG Processing 420/850 atomic regions from SNP 125809 to 126409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,479 DEBUG Processing 415/883 atomic regions from SNP 124473 to 125073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,492 DEBUG Processing 209/642 atomic regions from SNP 62566 to 63166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,497 DEBUG Processing 337/1016 atomic regions from SNP 100904 to 101504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,537 DEBUG Processing 277/363 atomic regions from SNP 82909 to 83509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:02,672 DEBUG Processing 421/850 atomic regions from SNP 126109 to 126709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,678 DEBUG Processing 312/1127 atomic regions from SNP 93318 to 93918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,741 DEBUG Processing 416/883 atomic regions from SNP 124773 to 125373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:02,755 DEBUG Processing 210/642 atomic regions from SNP 62866 to 63466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:02,783 DEBUG Processing 338/1016 atomic regions from SNP 101204 to 101804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:02,790 DEBUG Processing 278/363 atomic regions from SNP 83209 to 83809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:02,907 DEBUG Processing 422/850 atomic regions from SNP 126409 to 127009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:02,944 DEBUG Processing 313/1127 atomic regions from SNP 93618 to 94218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:02,997 DEBUG Processing 417/883 atomic regions from SNP 125073 to 125673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,007 DEBUG Processing 211/642 atomic regions from SNP 63166 to 63766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,040 DEBUG Processing 279/363 atomic regions from SNP 83509 to 84109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:03,069 DEBUG Processing 339/1016 atomic regions from SNP 101504 to 102104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,146 DEBUG Processing 423/850 atomic regions from SNP 126709 to 127309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,218 DEBUG Processing 314/1127 atomic regions from SNP 93918 to 94518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,256 DEBUG Processing 418/883 atomic regions from SNP 125373 to 125973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,262 DEBUG Processing 212/642 atomic regions from SNP 63466 to 64066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,280 DEBUG Processing 280/363 atomic regions from SNP 83809 to 84409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:03,342 DEBUG Processing 340/1016 atomic regions from SNP 101804 to 102404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,382 DEBUG Processing 424/850 atomic regions from SNP 127009 to 127609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,493 DEBUG Processing 315/1127 atomic regions from SNP 94218 to 94818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,514 DEBUG Processing 213/642 atomic regions from SNP 63766 to 64366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,522 DEBUG Processing 281/363 atomic regions from SNP 84109 to 84709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:03,525 DEBUG Processing 419/883 atomic regions from SNP 125673 to 126273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,614 DEBUG Processing 341/1016 atomic regions from SNP 102104 to 102704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:03,617 DEBUG Processing 425/850 atomic regions from SNP 127309 to 127909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,771 DEBUG Processing 282/363 atomic regions from SNP 84409 to 85009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:03,771 DEBUG Processing 214/642 atomic regions from SNP 64066 to 64666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:03,773 DEBUG Processing 316/1127 atomic regions from SNP 94518 to 95118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:03,806 DEBUG Processing 420/883 atomic regions from SNP 125973 to 126573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:03,860 DEBUG Processing 426/850 atomic regions from SNP 127609 to 128209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:03,886 DEBUG Processing 342/1016 atomic regions from SNP 102404 to 103004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,008 DEBUG Processing 283/363 atomic regions from SNP 84709 to 85309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:04,024 DEBUG Processing 215/642 atomic regions from SNP 64366 to 64966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,050 DEBUG Processing 317/1127 atomic regions from SNP 94818 to 95418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,073 DEBUG Processing 421/883 atomic regions from SNP 126273 to 126873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,102 DEBUG Processing 427/850 atomic regions from SNP 127909 to 128509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,156 DEBUG Processing 343/1016 atomic regions from SNP 102704 to 103304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,242 DEBUG Processing 284/363 atomic regions from SNP 85009 to 85609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:04,273 DEBUG Processing 216/642 atomic regions from SNP 64666 to 65266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,338 DEBUG Processing 422/883 atomic regions from SNP 126573 to 127173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,340 DEBUG Processing 318/1127 atomic regions from SNP 95118 to 95718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,349 DEBUG Processing 428/850 atomic regions from SNP 128209 to 128809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,427 DEBUG Processing 344/1016 atomic regions from SNP 103004 to 103604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,476 DEBUG Processing 285/363 atomic regions from SNP 85309 to 85909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:04,519 DEBUG Processing 217/642 atomic regions from SNP 64966 to 65566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,588 DEBUG Processing 423/883 atomic regions from SNP 126873 to 127473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,592 DEBUG Processing 429/850 atomic regions from SNP 128509 to 129109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,642 DEBUG Processing 319/1127 atomic regions from SNP 95418 to 96018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,696 DEBUG Processing 345/1016 atomic regions from SNP 103304 to 103904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:04,710 DEBUG Processing 286/363 atomic regions from SNP 85609 to 86209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:04,766 DEBUG Processing 218/642 atomic regions from SNP 65266 to 65866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:04,830 DEBUG Processing 430/850 atomic regions from SNP 128809 to 129409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:04,833 DEBUG Processing 424/883 atomic regions from SNP 127173 to 127773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:04,921 DEBUG Processing 320/1127 atomic regions from SNP 95718 to 96318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:04,947 DEBUG Processing 287/363 atomic regions from SNP 85909 to 86509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:04,969 DEBUG Processing 346/1016 atomic regions from SNP 103604 to 104204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,013 DEBUG Processing 219/642 atomic regions from SNP 65566 to 66166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,068 DEBUG Processing 431/850 atomic regions from SNP 129109 to 129709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,077 DEBUG Processing 425/883 atomic regions from SNP 127473 to 128073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,183 DEBUG Processing 288/363 atomic regions from SNP 86209 to 86809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:05,194 DEBUG Processing 321/1127 atomic regions from SNP 96018 to 96618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,247 DEBUG Processing 347/1016 atomic regions from SNP 103904 to 104504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,268 DEBUG Processing 220/642 atomic regions from SNP 65866 to 66466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,312 DEBUG Processing 432/850 atomic regions from SNP 129409 to 130009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,332 DEBUG Processing 426/883 atomic regions from SNP 127773 to 128373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,411 DEBUG Processing 289/363 atomic regions from SNP 86509 to 87109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:05,465 DEBUG Processing 322/1127 atomic regions from SNP 96318 to 96918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,522 DEBUG Processing 221/642 atomic regions from SNP 66166 to 66766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,529 DEBUG Processing 348/1016 atomic regions from SNP 104204 to 104804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,562 DEBUG Processing 433/850 atomic regions from SNP 129709 to 130309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,583 DEBUG Processing 427/883 atomic regions from SNP 128073 to 128673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,638 DEBUG Processing 290/363 atomic regions from SNP 86809 to 87409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:05,752 DEBUG Processing 323/1127 atomic regions from SNP 96618 to 97218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:05,787 DEBUG Processing 222/642 atomic regions from SNP 66466 to 67066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:05,820 DEBUG Processing 434/850 atomic regions from SNP 130009 to 130609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:05,820 DEBUG Processing 349/1016 atomic regions from SNP 104504 to 105104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:05,845 DEBUG Processing 428/883 atomic regions from SNP 128373 to 128973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:05,876 DEBUG Processing 291/363 atomic regions from SNP 87109 to 87709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:06,043 DEBUG Processing 223/642 atomic regions from SNP 66766 to 67366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,048 DEBUG Processing 324/1127 atomic regions from SNP 96918 to 97518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,075 DEBUG Processing 435/850 atomic regions from SNP 130309 to 130909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,102 DEBUG Processing 350/1016 atomic regions from SNP 104804 to 105404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,103 DEBUG Processing 429/883 atomic regions from SNP 128673 to 129273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,120 DEBUG Processing 292/363 atomic regions from SNP 87409 to 88009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:06,291 DEBUG Processing 224/642 atomic regions from SNP 67066 to 67666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,325 DEBUG Processing 436/850 atomic regions from SNP 130609 to 131209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,346 DEBUG Processing 325/1127 atomic regions from SNP 97218 to 97818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,362 DEBUG Processing 430/883 atomic regions from SNP 128973 to 129573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,363 DEBUG Processing 293/363 atomic regions from SNP 87709 to 88309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:06,379 DEBUG Processing 351/1016 atomic regions from SNP 105104 to 105704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,535 DEBUG Processing 225/642 atomic regions from SNP 67366 to 67966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,571 DEBUG Processing 437/850 atomic regions from SNP 130909 to 131509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,606 DEBUG Processing 294/363 atomic regions from SNP 88009 to 88609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:06,617 DEBUG Processing 431/883 atomic regions from SNP 129273 to 129873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,647 DEBUG Processing 326/1127 atomic regions from SNP 97518 to 98118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:06,657 DEBUG Processing 352/1016 atomic regions from SNP 105404 to 106004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,779 DEBUG Processing 226/642 atomic regions from SNP 67666 to 68266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:06,811 DEBUG Processing 438/850 atomic regions from SNP 131209 to 131809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:06,834 DEBUG Processing 295/363 atomic regions from SNP 88309 to 88909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:06,862 DEBUG Processing 432/883 atomic regions from SNP 129573 to 130173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:06,932 DEBUG Processing 353/1016 atomic regions from SNP 105704 to 106304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:06,934 DEBUG Processing 327/1127 atomic regions from SNP 97818 to 98418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,030 DEBUG Processing 227/642 atomic regions from SNP 67966 to 68566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,055 DEBUG Processing 439/850 atomic regions from SNP 131509 to 132109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,064 DEBUG Processing 296/363 atomic regions from SNP 88609 to 89209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:07,102 DEBUG Processing 433/883 atomic regions from SNP 129873 to 130473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,199 DEBUG Processing 354/1016 atomic regions from SNP 106004 to 106604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,225 DEBUG Processing 328/1127 atomic regions from SNP 98118 to 98718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,288 DEBUG Processing 228/642 atomic regions from SNP 68266 to 68866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,305 DEBUG Processing 297/363 atomic regions from SNP 88909 to 89509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:07,307 DEBUG Processing 440/850 atomic regions from SNP 131809 to 132409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,348 DEBUG Processing 434/883 atomic regions from SNP 130173 to 130773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,459 DEBUG Processing 355/1016 atomic regions from SNP 106304 to 106904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,525 DEBUG Processing 329/1127 atomic regions from SNP 98418 to 99018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,550 DEBUG Processing 229/642 atomic regions from SNP 68566 to 69166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,552 DEBUG Processing 298/363 atomic regions from SNP 89209 to 89809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:07,562 DEBUG Processing 441/850 atomic regions from SNP 132109 to 132709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,606 DEBUG Processing 435/883 atomic regions from SNP 130473 to 131073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,715 DEBUG Processing 356/1016 atomic regions from SNP 106604 to 107204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:07,796 DEBUG Processing 299/363 atomic regions from SNP 89509 to 90109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:07,806 DEBUG Processing 230/642 atomic regions from SNP 68866 to 69466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:07,818 DEBUG Processing 442/850 atomic regions from SNP 132409 to 133009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:07,824 DEBUG Processing 330/1127 atomic regions from SNP 98718 to 99318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:07,867 DEBUG Processing 436/883 atomic regions from SNP 130773 to 131373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:07,974 DEBUG Processing 357/1016 atomic regions from SNP 106904 to 107504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,030 DEBUG Processing 300/363 atomic regions from SNP 89809 to 90409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:08,058 DEBUG Processing 231/642 atomic regions from SNP 69166 to 69766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,065 DEBUG Processing 443/850 atomic regions from SNP 132709 to 133309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,106 DEBUG Processing 331/1127 atomic regions from SNP 99018 to 99618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,129 DEBUG Processing 437/883 atomic regions from SNP 131073 to 131673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,239 DEBUG Processing 358/1016 atomic regions from SNP 107204 to 107804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,260 DEBUG Processing 301/363 atomic regions from SNP 90109 to 90709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:08,303 DEBUG Processing 232/642 atomic regions from SNP 69466 to 70066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,306 DEBUG Processing 444/850 atomic regions from SNP 133009 to 133609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,381 DEBUG Processing 438/883 atomic regions from SNP 131373 to 131973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,386 DEBUG Processing 332/1127 atomic regions from SNP 99318 to 99918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,513 DEBUG Processing 302/363 atomic regions from SNP 90409 to 91009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:08,513 DEBUG Processing 359/1016 atomic regions from SNP 107504 to 108104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,544 DEBUG Processing 233/642 atomic regions from SNP 69766 to 70366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,545 DEBUG Processing 445/850 atomic regions from SNP 133309 to 133909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,625 DEBUG Processing 439/883 atomic regions from SNP 131673 to 132273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,664 DEBUG Processing 333/1127 atomic regions from SNP 99618 to 100218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:08,770 DEBUG Processing 303/363 atomic regions from SNP 90709 to 91309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:08,790 DEBUG Processing 446/850 atomic regions from SNP 133609 to 134209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:08,791 DEBUG Processing 360/1016 atomic regions from SNP 107804 to 108404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:08,794 DEBUG Processing 234/642 atomic regions from SNP 70066 to 70666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:08,863 DEBUG Processing 440/883 atomic regions from SNP 131973 to 132573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:08,935 DEBUG Processing 334/1127 atomic regions from SNP 99918 to 100518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,015 DEBUG Processing 304/363 atomic regions from SNP 91009 to 91609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:09,042 DEBUG Processing 447/850 atomic regions from SNP 133909 to 134509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,048 DEBUG Processing 235/642 atomic regions from SNP 70366 to 70966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,071 DEBUG Processing 361/1016 atomic regions from SNP 108104 to 108704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,106 DEBUG Processing 441/883 atomic regions from SNP 132273 to 132873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,209 DEBUG Processing 335/1127 atomic regions from SNP 100218 to 100818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,259 DEBUG Processing 305/363 atomic regions from SNP 91309 to 91909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:09,297 DEBUG Processing 448/850 atomic regions from SNP 134209 to 134809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,307 DEBUG Processing 236/642 atomic regions from SNP 70666 to 71266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,351 DEBUG Processing 362/1016 atomic regions from SNP 108404 to 109004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,356 DEBUG Processing 442/883 atomic regions from SNP 132573 to 133173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,485 DEBUG Processing 336/1127 atomic regions from SNP 100518 to 101118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,495 DEBUG Processing 306/363 atomic regions from SNP 91609 to 92209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:09,552 DEBUG Processing 449/850 atomic regions from SNP 134509 to 135109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,565 DEBUG Processing 237/642 atomic regions from SNP 70966 to 71566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,617 DEBUG Processing 443/883 atomic regions from SNP 132873 to 133473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,634 DEBUG Processing 363/1016 atomic regions from SNP 108704 to 109304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,721 DEBUG Processing 307/363 atomic regions from SNP 91909 to 92509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:09,762 DEBUG Processing 337/1127 atomic regions from SNP 100818 to 101418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:09,803 DEBUG Processing 450/850 atomic regions from SNP 134809 to 135409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:09,823 DEBUG Processing 238/642 atomic regions from SNP 71266 to 71866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:09,882 DEBUG Processing 444/883 atomic regions from SNP 133173 to 133773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:09,923 DEBUG Processing 364/1016 atomic regions from SNP 109004 to 109604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:09,949 DEBUG Processing 308/363 atomic regions from SNP 92209 to 92809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:10,036 DEBUG Processing 338/1127 atomic regions from SNP 101118 to 101718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,047 DEBUG Processing 451/850 atomic regions from SNP 135109 to 135709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,071 DEBUG Processing 239/642 atomic regions from SNP 71566 to 72166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,153 DEBUG Processing 445/883 atomic regions from SNP 133473 to 134073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,196 DEBUG Processing 309/363 atomic regions from SNP 92509 to 93109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:10,208 DEBUG Processing 365/1016 atomic regions from SNP 109304 to 109904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,282 DEBUG Processing 452/850 atomic regions from SNP 135409 to 136009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,305 DEBUG Processing 339/1127 atomic regions from SNP 101418 to 102018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,309 DEBUG Processing 240/642 atomic regions from SNP 71866 to 72466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,434 DEBUG Processing 446/883 atomic regions from SNP 133773 to 134373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,451 DEBUG Processing 310/363 atomic regions from SNP 92809 to 93409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:10,501 DEBUG Processing 366/1016 atomic regions from SNP 109604 to 110204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,530 DEBUG Processing 453/850 atomic regions from SNP 135709 to 136309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,556 DEBUG Processing 241/642 atomic regions from SNP 72166 to 72766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,584 DEBUG Processing 340/1127 atomic regions from SNP 101718 to 102318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,692 DEBUG Processing 311/363 atomic regions from SNP 93109 to 93709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:10,710 DEBUG Processing 447/883 atomic regions from SNP 134073 to 134673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:10,783 DEBUG Processing 454/850 atomic regions from SNP 136009 to 136609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:10,786 DEBUG Processing 367/1016 atomic regions from SNP 109904 to 110504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:10,831 DEBUG Processing 242/642 atomic regions from SNP 72466 to 73066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:10,856 DEBUG Processing 341/1127 atomic regions from SNP 102018 to 102618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:10,923 DEBUG Processing 312/363 atomic regions from SNP 93409 to 94009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:10,986 DEBUG Processing 448/883 atomic regions from SNP 134373 to 134973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,038 DEBUG Processing 455/850 atomic regions from SNP 136309 to 136909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,066 DEBUG Processing 368/1016 atomic regions from SNP 110204 to 110804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,090 DEBUG Processing 243/642 atomic regions from SNP 72766 to 73366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,130 DEBUG Processing 342/1127 atomic regions from SNP 102318 to 102918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,147 DEBUG Processing 313/363 atomic regions from SNP 93709 to 94309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:11,261 DEBUG Processing 449/883 atomic regions from SNP 134673 to 135273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,290 DEBUG Processing 456/850 atomic regions from SNP 136609 to 137209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,349 DEBUG Processing 244/642 atomic regions from SNP 73066 to 73666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,352 DEBUG Processing 369/1016 atomic regions from SNP 110504 to 111104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,382 DEBUG Processing 314/363 atomic regions from SNP 94009 to 94609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:11,410 DEBUG Processing 343/1127 atomic regions from SNP 102618 to 103218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,516 DEBUG Processing 450/883 atomic regions from SNP 134973 to 135573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,538 DEBUG Processing 457/850 atomic regions from SNP 136909 to 137509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,607 DEBUG Processing 245/642 atomic regions from SNP 73366 to 73966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,629 DEBUG Processing 315/363 atomic regions from SNP 94309 to 94909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:11,631 DEBUG Processing 370/1016 atomic regions from SNP 110804 to 111404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,685 DEBUG Processing 344/1127 atomic regions from SNP 102918 to 103518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,756 DEBUG Processing 451/883 atomic regions from SNP 135273 to 135873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:11,778 DEBUG Processing 458/850 atomic regions from SNP 137209 to 137809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:11,860 DEBUG Processing 246/642 atomic regions from SNP 73666 to 74266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:11,870 DEBUG Processing 316/363 atomic regions from SNP 94609 to 95209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:11,910 DEBUG Processing 371/1016 atomic regions from SNP 111104 to 111704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:11,982 DEBUG Processing 345/1127 atomic regions from SNP 103218 to 103818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:11,998 DEBUG Processing 452/883 atomic regions from SNP 135573 to 136173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,016 DEBUG Processing 459/850 atomic regions from SNP 137509 to 138109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,105 DEBUG Processing 247/642 atomic regions from SNP 73966 to 74566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,108 DEBUG Processing 317/363 atomic regions from SNP 94909 to 95509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:12,185 DEBUG Processing 372/1016 atomic regions from SNP 111404 to 112004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,245 DEBUG Processing 453/883 atomic regions from SNP 135873 to 136473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,256 DEBUG Processing 460/850 atomic regions from SNP 137809 to 138409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,275 DEBUG Processing 346/1127 atomic regions from SNP 103518 to 104118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,341 DEBUG Processing 318/363 atomic regions from SNP 95209 to 95809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:12,350 DEBUG Processing 248/642 atomic regions from SNP 74266 to 74866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,459 DEBUG Processing 373/1016 atomic regions from SNP 111704 to 112304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,501 DEBUG Processing 454/883 atomic regions from SNP 136173 to 136773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,504 DEBUG Processing 461/850 atomic regions from SNP 138109 to 138709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,565 DEBUG Processing 347/1127 atomic regions from SNP 103818 to 104418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:12,572 DEBUG Processing 319/363 atomic regions from SNP 95509 to 96109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:12,593 DEBUG Processing 249/642 atomic regions from SNP 74566 to 75166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,731 DEBUG Processing 374/1016 atomic regions from SNP 112004 to 112604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:12,751 DEBUG Processing 462/850 atomic regions from SNP 138409 to 139009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:12,763 DEBUG Processing 455/883 atomic regions from SNP 136473 to 137073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:12,811 DEBUG Processing 320/363 atomic regions from SNP 95809 to 96409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:12,845 DEBUG Processing 250/642 atomic regions from SNP 74866 to 75466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:12,873 DEBUG Processing 348/1127 atomic regions from SNP 104118 to 104718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,000 DEBUG Processing 463/850 atomic regions from SNP 138709 to 139309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,007 DEBUG Processing 375/1016 atomic regions from SNP 112304 to 112904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,046 DEBUG Processing 456/883 atomic regions from SNP 136773 to 137373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,050 DEBUG Processing 321/363 atomic regions from SNP 96109 to 96709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:13,094 DEBUG Processing 251/642 atomic regions from SNP 75166 to 75766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,156 DEBUG Processing 349/1127 atomic regions from SNP 104418 to 105018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,246 DEBUG Processing 464/850 atomic regions from SNP 139009 to 139609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,280 DEBUG Processing 376/1016 atomic regions from SNP 112604 to 113204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,294 DEBUG Processing 322/363 atomic regions from SNP 96409 to 97009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:13,330 DEBUG Processing 457/883 atomic regions from SNP 137073 to 137673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,349 DEBUG Processing 252/642 atomic regions from SNP 75466 to 76066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,440 DEBUG Processing 350/1127 atomic regions from SNP 104718 to 105318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,493 DEBUG Processing 465/850 atomic regions from SNP 139309 to 139909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,535 DEBUG Processing 323/363 atomic regions from SNP 96709 to 97309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:13,558 DEBUG Processing 377/1016 atomic regions from SNP 112904 to 113504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,604 DEBUG Processing 253/642 atomic regions from SNP 75766 to 76366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,613 DEBUG Processing 458/883 atomic regions from SNP 137373 to 137973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,717 DEBUG Processing 351/1127 atomic regions from SNP 105018 to 105618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:13,731 DEBUG Processing 466/850 atomic regions from SNP 139609 to 140209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:13,765 DEBUG Processing 324/363 atomic regions from SNP 97009 to 97609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:13,831 DEBUG Processing 378/1016 atomic regions from SNP 113204 to 113804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:13,861 DEBUG Processing 254/642 atomic regions from SNP 76066 to 76666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:13,898 DEBUG Processing 459/883 atomic regions from SNP 137673 to 138273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:13,981 DEBUG Processing 467/850 atomic regions from SNP 139909 to 140509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,000 DEBUG Processing 352/1127 atomic regions from SNP 105318 to 105918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,008 DEBUG Processing 325/363 atomic regions from SNP 97309 to 97909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:14,101 DEBUG Processing 379/1016 atomic regions from SNP 113504 to 114104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,110 DEBUG Processing 255/642 atomic regions from SNP 76366 to 76966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,156 DEBUG Processing 460/883 atomic regions from SNP 137973 to 138573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,226 DEBUG Processing 468/850 atomic regions from SNP 140209 to 140809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,244 DEBUG Processing 326/363 atomic regions from SNP 97609 to 98209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:14,275 DEBUG Processing 353/1127 atomic regions from SNP 105618 to 106218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,355 DEBUG Processing 256/642 atomic regions from SNP 76666 to 77266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,370 DEBUG Processing 380/1016 atomic regions from SNP 113804 to 114404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,428 DEBUG Processing 461/883 atomic regions from SNP 138273 to 138873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,468 DEBUG Processing 469/850 atomic regions from SNP 140509 to 141109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,482 DEBUG Processing 327/363 atomic regions from SNP 97909 to 98509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:14,580 DEBUG Processing 354/1127 atomic regions from SNP 105918 to 106518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,605 DEBUG Processing 257/642 atomic regions from SNP 76966 to 77566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,645 DEBUG Processing 381/1016 atomic regions from SNP 114104 to 114704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,701 DEBUG Processing 462/883 atomic regions from SNP 138573 to 139173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:14,710 DEBUG Processing 470/850 atomic regions from SNP 140809 to 141409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,714 DEBUG Processing 328/363 atomic regions from SNP 98209 to 98809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:14,856 DEBUG Processing 258/642 atomic regions from SNP 77266 to 77866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:14,864 DEBUG Processing 355/1127 atomic regions from SNP 106218 to 106818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:14,921 DEBUG Processing 382/1016 atomic regions from SNP 114404 to 115004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:14,948 DEBUG Processing 329/363 atomic regions from SNP 98509 to 99109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:14,954 DEBUG Processing 471/850 atomic regions from SNP 141109 to 141709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:14,974 DEBUG Processing 463/883 atomic regions from SNP 138873 to 139473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,103 DEBUG Processing 259/642 atomic regions from SNP 77566 to 78166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,152 DEBUG Processing 356/1127 atomic regions from SNP 106518 to 107118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,185 DEBUG Processing 330/363 atomic regions from SNP 98809 to 99409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:15,197 DEBUG Processing 383/1016 atomic regions from SNP 114704 to 115304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,199 DEBUG Processing 472/850 atomic regions from SNP 141409 to 142009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,229 DEBUG Processing 464/883 atomic regions from SNP 139173 to 139773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,351 DEBUG Processing 260/642 atomic regions from SNP 77866 to 78466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,425 DEBUG Processing 331/363 atomic regions from SNP 99109 to 99709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:15,446 DEBUG Processing 473/850 atomic regions from SNP 141709 to 142309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,458 DEBUG Processing 357/1127 atomic regions from SNP 106818 to 107418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,473 DEBUG Processing 384/1016 atomic regions from SNP 115004 to 115604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,480 DEBUG Processing 465/883 atomic regions from SNP 139473 to 140073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,599 DEBUG Processing 261/642 atomic regions from SNP 78166 to 78766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,667 DEBUG Processing 332/363 atomic regions from SNP 99409 to 100009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:15,692 DEBUG Processing 474/850 atomic regions from SNP 142009 to 142609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,730 DEBUG Processing 466/883 atomic regions from SNP 139773 to 140373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:15,743 DEBUG Processing 385/1016 atomic regions from SNP 115304 to 115904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:15,758 DEBUG Processing 358/1127 atomic regions from SNP 107118 to 107718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:15,843 DEBUG Processing 262/642 atomic regions from SNP 78466 to 79066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:15,907 DEBUG Processing 333/363 atomic regions from SNP 99709 to 100309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:15,940 DEBUG Processing 475/850 atomic regions from SNP 142309 to 142909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:15,992 DEBUG Processing 467/883 atomic regions from SNP 140073 to 140673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,016 DEBUG Processing 386/1016 atomic regions from SNP 115604 to 116204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,037 DEBUG Processing 359/1127 atomic regions from SNP 107418 to 108018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,088 DEBUG Processing 263/642 atomic regions from SNP 78766 to 79366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,144 DEBUG Processing 334/363 atomic regions from SNP 100009 to 100609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:16,187 DEBUG Processing 476/850 atomic regions from SNP 142609 to 143209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,258 DEBUG Processing 468/883 atomic regions from SNP 140373 to 140973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,289 DEBUG Processing 387/1016 atomic regions from SNP 115904 to 116504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,335 DEBUG Processing 264/642 atomic regions from SNP 79066 to 79666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,343 DEBUG Processing 360/1127 atomic regions from SNP 107718 to 108318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,385 DEBUG Processing 335/363 atomic regions from SNP 100309 to 100909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:16,433 DEBUG Processing 477/850 atomic regions from SNP 142909 to 143509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,533 DEBUG Processing 469/883 atomic regions from SNP 140673 to 141273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,561 DEBUG Processing 388/1016 atomic regions from SNP 116204 to 116804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,583 DEBUG Processing 265/642 atomic regions from SNP 79366 to 79966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,621 DEBUG Processing 336/363 atomic regions from SNP 100609 to 101209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:16,649 DEBUG Processing 361/1127 atomic regions from SNP 108018 to 108618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:16,676 DEBUG Processing 478/850 atomic regions from SNP 143209 to 143809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,816 DEBUG Processing 470/883 atomic regions from SNP 140973 to 141573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:16,831 DEBUG Processing 389/1016 atomic regions from SNP 116504 to 117104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:16,834 DEBUG Processing 266/642 atomic regions from SNP 79666 to 80266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:16,858 DEBUG Processing 337/363 atomic regions from SNP 100909 to 101509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:16,920 DEBUG Processing 479/850 atomic regions from SNP 143509 to 144109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:16,926 DEBUG Processing 362/1127 atomic regions from SNP 108318 to 108918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,087 DEBUG Processing 267/642 atomic regions from SNP 79966 to 80566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,099 DEBUG Processing 338/363 atomic regions from SNP 101209 to 101809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:17,105 DEBUG Processing 471/883 atomic regions from SNP 141273 to 141873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,111 DEBUG Processing 390/1016 atomic regions from SNP 116804 to 117404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,196 DEBUG Processing 480/850 atomic regions from SNP 143809 to 144409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,202 DEBUG Processing 363/1127 atomic regions from SNP 108618 to 109218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,340 DEBUG Processing 339/363 atomic regions from SNP 101509 to 102109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:17,341 DEBUG Processing 268/642 atomic regions from SNP 80266 to 80866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,392 DEBUG Processing 391/1016 atomic regions from SNP 117104 to 117704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,401 DEBUG Processing 472/883 atomic regions from SNP 141573 to 142173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,441 DEBUG Processing 481/850 atomic regions from SNP 144109 to 144709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,480 DEBUG Processing 364/1127 atomic regions from SNP 108918 to 109518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,575 DEBUG Processing 340/363 atomic regions from SNP 101809 to 102409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:17,592 DEBUG Processing 269/642 atomic regions from SNP 80566 to 81166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,672 DEBUG Processing 392/1016 atomic regions from SNP 117404 to 118004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,690 DEBUG Processing 482/850 atomic regions from SNP 144409 to 145009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,695 DEBUG Processing 473/883 atomic regions from SNP 141873 to 142473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:17,752 DEBUG Processing 365/1127 atomic regions from SNP 109218 to 109818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:17,805 DEBUG Processing 341/363 atomic regions from SNP 102109 to 102709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:17,834 DEBUG Processing 270/642 atomic regions from SNP 80866 to 81466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:17,934 DEBUG Processing 483/850 atomic regions from SNP 144709 to 145309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:17,967 DEBUG Processing 393/1016 atomic regions from SNP 117704 to 118304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:17,983 DEBUG Processing 474/883 atomic regions from SNP 142173 to 142773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,023 DEBUG Processing 366/1127 atomic regions from SNP 109518 to 110118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,039 DEBUG Processing 342/363 atomic regions from SNP 102409 to 103009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:18,080 DEBUG Processing 271/642 atomic regions from SNP 81166 to 81766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,176 DEBUG Processing 484/850 atomic regions from SNP 145009 to 145609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,266 DEBUG Processing 394/1016 atomic regions from SNP 118004 to 118604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,272 DEBUG Processing 475/883 atomic regions from SNP 142473 to 143073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,280 DEBUG Processing 343/363 atomic regions from SNP 102709 to 103309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:18,295 DEBUG Processing 367/1127 atomic regions from SNP 109818 to 110418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,330 DEBUG Processing 272/642 atomic regions from SNP 81466 to 82066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,413 DEBUG Processing 485/850 atomic regions from SNP 145309 to 145909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,525 DEBUG Processing 344/363 atomic regions from SNP 103009 to 103609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:18,549 DEBUG Processing 395/1016 atomic regions from SNP 118304 to 118904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,556 DEBUG Processing 476/883 atomic regions from SNP 142773 to 143373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,567 DEBUG Processing 368/1127 atomic regions from SNP 110118 to 110718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,587 DEBUG Processing 273/642 atomic regions from SNP 81766 to 82366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,652 DEBUG Processing 486/850 atomic regions from SNP 145609 to 146209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,756 DEBUG Processing 345/363 atomic regions from SNP 103309 to 103909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:18,831 DEBUG Processing 396/1016 atomic regions from SNP 118604 to 119204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:18,837 DEBUG Processing 369/1127 atomic regions from SNP 110418 to 111018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:18,841 DEBUG Processing 274/642 atomic regions from SNP 82066 to 82666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:18,844 DEBUG Processing 477/883 atomic regions from SNP 143073 to 143673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:18,900 DEBUG Processing 487/850 atomic regions from SNP 145909 to 146509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:18,984 DEBUG Processing 346/363 atomic regions from SNP 103609 to 104209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:19,089 DEBUG Processing 275/642 atomic regions from SNP 82366 to 82966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,107 DEBUG Processing 397/1016 atomic regions from SNP 118904 to 119504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,131 DEBUG Processing 370/1127 atomic regions from SNP 110718 to 111318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,135 DEBUG Processing 478/883 atomic regions from SNP 143373 to 143973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,149 DEBUG Processing 488/850 atomic regions from SNP 146209 to 146809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,212 DEBUG Processing 347/363 atomic regions from SNP 103909 to 104509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:19,333 DEBUG Processing 276/642 atomic regions from SNP 82666 to 83266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,383 DEBUG Processing 398/1016 atomic regions from SNP 119204 to 119804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,404 DEBUG Processing 489/850 atomic regions from SNP 146509 to 147109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,410 DEBUG Processing 371/1127 atomic regions from SNP 111018 to 111618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,426 DEBUG Processing 479/883 atomic regions from SNP 143673 to 144273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,453 DEBUG Processing 348/363 atomic regions from SNP 104209 to 104809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:19,569 DEBUG Processing 277/642 atomic regions from SNP 82966 to 83566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,654 DEBUG Processing 490/850 atomic regions from SNP 146809 to 147409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,658 DEBUG Processing 399/1016 atomic regions from SNP 119504 to 120104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,687 DEBUG Processing 372/1127 atomic regions from SNP 111318 to 111918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,697 DEBUG Processing 349/363 atomic regions from SNP 104509 to 105109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:19,711 DEBUG Processing 480/883 atomic regions from SNP 143973 to 144573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:19,808 DEBUG Processing 278/642 atomic regions from SNP 83266 to 83866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:19,896 DEBUG Processing 491/850 atomic regions from SNP 147109 to 147709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:19,933 DEBUG Processing 400/1016 atomic regions from SNP 119804 to 120404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:19,938 DEBUG Processing 350/363 atomic regions from SNP 104809 to 105409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:19,968 DEBUG Processing 373/1127 atomic regions from SNP 111618 to 112218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:19,993 DEBUG Processing 481/883 atomic regions from SNP 144273 to 144873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,054 DEBUG Processing 279/642 atomic regions from SNP 83566 to 84166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,134 DEBUG Processing 492/850 atomic regions from SNP 147409 to 148009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,169 DEBUG Processing 351/363 atomic regions from SNP 105109 to 105709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:20,208 DEBUG Processing 401/1016 atomic regions from SNP 120104 to 120704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,245 DEBUG Processing 374/1127 atomic regions from SNP 111918 to 112518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,273 DEBUG Processing 482/883 atomic regions from SNP 144573 to 145173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,309 DEBUG Processing 280/642 atomic regions from SNP 83866 to 84466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,378 DEBUG Processing 493/850 atomic regions from SNP 147709 to 148309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,401 DEBUG Processing 352/363 atomic regions from SNP 105409 to 106009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:20,483 DEBUG Processing 402/1016 atomic regions from SNP 120404 to 121004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,524 DEBUG Processing 375/1127 atomic regions from SNP 112218 to 112818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,561 DEBUG Processing 483/883 atomic regions from SNP 144873 to 145473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,562 DEBUG Processing 281/642 atomic regions from SNP 84166 to 84766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,626 DEBUG Processing 494/850 atomic regions from SNP 148009 to 148609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,638 DEBUG Processing 353/363 atomic regions from SNP 105709 to 106309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:20,778 DEBUG Processing 403/1016 atomic regions from SNP 120704 to 121304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:20,791 DEBUG Processing 376/1127 atomic regions from SNP 112518 to 113118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:20,807 DEBUG Processing 282/642 atomic regions from SNP 84466 to 85066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:20,840 DEBUG Processing 484/883 atomic regions from SNP 145173 to 145773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:20,873 DEBUG Processing 495/850 atomic regions from SNP 148309 to 148909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:20,881 DEBUG Processing 354/363 atomic regions from SNP 106009 to 106609 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:21,054 DEBUG Processing 283/642 atomic regions from SNP 84766 to 85366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,062 DEBUG Processing 377/1127 atomic regions from SNP 112818 to 113418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,074 DEBUG Processing 404/1016 atomic regions from SNP 121004 to 121604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,120 DEBUG Processing 355/363 atomic regions from SNP 106309 to 106909 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:21,120 DEBUG Processing 496/850 atomic regions from SNP 148609 to 149209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,129 DEBUG Processing 485/883 atomic regions from SNP 145473 to 146073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,298 DEBUG Processing 284/642 atomic regions from SNP 85066 to 85666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,331 DEBUG Processing 378/1127 atomic regions from SNP 113118 to 113718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,345 DEBUG Processing 405/1016 atomic regions from SNP 121304 to 121904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,356 DEBUG Processing 356/363 atomic regions from SNP 106609 to 107209 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:21,365 DEBUG Processing 497/850 atomic regions from SNP 148909 to 149509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,412 DEBUG Processing 486/883 atomic regions from SNP 145773 to 146373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,542 DEBUG Processing 285/642 atomic regions from SNP 85366 to 85966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,590 DEBUG Processing 357/363 atomic regions from SNP 106909 to 107509 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:21,599 DEBUG Processing 379/1127 atomic regions from SNP 113418 to 114018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,606 DEBUG Processing 498/850 atomic regions from SNP 149209 to 149809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,616 DEBUG Processing 406/1016 atomic regions from SNP 121604 to 122204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,665 DEBUG Processing 487/883 atomic regions from SNP 146073 to 146673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:21,788 DEBUG Processing 286/642 atomic regions from SNP 85666 to 86266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:21,825 DEBUG Processing 358/363 atomic regions from SNP 107209 to 107809 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:21,849 DEBUG Processing 499/850 atomic regions from SNP 149509 to 150109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:21,870 DEBUG Processing 380/1127 atomic regions from SNP 113718 to 114318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:21,888 DEBUG Processing 407/1016 atomic regions from SNP 121904 to 122504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:21,913 DEBUG Processing 488/883 atomic regions from SNP 146373 to 146973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,036 DEBUG Processing 287/642 atomic regions from SNP 85966 to 86566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,061 DEBUG Processing 359/363 atomic regions from SNP 107509 to 108109 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:22,108 DEBUG Processing 500/850 atomic regions from SNP 149809 to 150409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,144 DEBUG Processing 381/1127 atomic regions from SNP 114018 to 114618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,158 DEBUG Processing 489/883 atomic regions from SNP 146673 to 147273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,160 DEBUG Processing 408/1016 atomic regions from SNP 122204 to 122804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,281 DEBUG Processing 288/642 atomic regions from SNP 86266 to 86866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,297 DEBUG Processing 360/363 atomic regions from SNP 107809 to 108409 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:22,386 DEBUG Processing 501/850 atomic regions from SNP 150109 to 150709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,408 DEBUG Processing 490/883 atomic regions from SNP 146973 to 147573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,417 DEBUG Processing 382/1127 atomic regions from SNP 114318 to 114918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,434 DEBUG Processing 409/1016 atomic regions from SNP 122504 to 123104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,526 DEBUG Processing 289/642 atomic regions from SNP 86566 to 87166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,536 DEBUG Processing 361/363 atomic regions from SNP 108109 to 108709 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:22,635 DEBUG Processing 502/850 atomic regions from SNP 150409 to 151009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,664 DEBUG Processing 491/883 atomic regions from SNP 147273 to 147873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,707 DEBUG Processing 383/1127 atomic regions from SNP 114618 to 115218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,714 DEBUG Processing 410/1016 atomic regions from SNP 122804 to 123404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:22,768 DEBUG Processing 362/363 atomic regions from SNP 108409 to 109009 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:22,773 DEBUG Processing 290/642 atomic regions from SNP 86866 to 87466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:22,878 DEBUG Processing 503/850 atomic regions from SNP 150709 to 151309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:22,917 DEBUG Processing 492/883 atomic regions from SNP 147573 to 148173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:22,989 DEBUG Processing 384/1127 atomic regions from SNP 114918 to 115518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:22,992 DEBUG Processing 411/1016 atomic regions from SNP 123104 to 123704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,005 DEBUG Processing 363/363 atomic regions from SNP 108709 to 109309 for chrX (subchromosome 5 of 6). 2025-01-31 09:45:23,018 DEBUG Processing 291/642 atomic regions from SNP 87166 to 87766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,117 DEBUG Processing 504/850 atomic regions from SNP 151009 to 151609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,135 DEBUG Unique SNPs positions in subchromosome 5: 109310 2025-01-31 09:45:23,171 DEBUG Processing 493/883 atomic regions from SNP 147873 to 148473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,269 DEBUG Processing 292/642 atomic regions from SNP 87466 to 88066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,271 DEBUG Processing 412/1016 atomic regions from SNP 123404 to 124004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,280 DEBUG Processing 385/1127 atomic regions from SNP 115218 to 115818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,358 DEBUG Processing 505/850 atomic regions from SNP 151309 to 151909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,420 DEBUG Processing 494/883 atomic regions from SNP 148173 to 148773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,447 DEBUG Subchromosome time: 101.0996224799892, subchromosome SNPs: 109310 2025-01-31 09:45:23,466 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:45:23,522 DEBUG Processing 293/642 atomic regions from SNP 87766 to 88366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,567 DEBUG Processing 386/1127 atomic regions from SNP 115518 to 116118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,573 DEBUG Processing 413/1016 atomic regions from SNP 123704 to 124304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,597 DEBUG Processing 506/850 atomic regions from SNP 151609 to 152209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,672 DEBUG Processing 495/883 atomic regions from SNP 148473 to 149073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:23,767 DEBUG Processing 294/642 atomic regions from SNP 88066 to 88666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:23,836 DEBUG Processing 507/850 atomic regions from SNP 151909 to 152509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:23,846 DEBUG Processing 387/1127 atomic regions from SNP 115818 to 116418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:23,853 DEBUG Processing 414/1016 atomic regions from SNP 124004 to 124604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:23,913 DEBUG Processing 496/883 atomic regions from SNP 148773 to 149373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,016 DEBUG Processing 295/642 atomic regions from SNP 88366 to 88966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,071 DEBUG Processing 508/850 atomic regions from SNP 152209 to 152809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,121 DEBUG Processing 415/1016 atomic regions from SNP 124304 to 124904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,121 DEBUG Processing 388/1127 atomic regions from SNP 116118 to 116718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,154 DEBUG Processing 497/883 atomic regions from SNP 149073 to 149673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,265 DEBUG Processing 296/642 atomic regions from SNP 88666 to 89266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,313 DEBUG Processing 509/850 atomic regions from SNP 152509 to 153109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,396 DEBUG Processing 389/1127 atomic regions from SNP 116418 to 117018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,398 DEBUG Processing 498/883 atomic regions from SNP 149373 to 149973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,406 DEBUG Processing 416/1016 atomic regions from SNP 124604 to 125204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,514 DEBUG Processing 297/642 atomic regions from SNP 88966 to 89566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,555 DEBUG Processing 510/850 atomic regions from SNP 152809 to 153409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,641 DEBUG Processing 499/883 atomic regions from SNP 149673 to 150273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,678 DEBUG Processing 390/1127 atomic regions from SNP 116718 to 117318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,697 DEBUG Processing 417/1016 atomic regions from SNP 124904 to 125504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:24,758 DEBUG Processing 298/642 atomic regions from SNP 89266 to 89866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:24,794 DEBUG Processing 511/850 atomic regions from SNP 153109 to 153709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:24,887 DEBUG Processing 500/883 atomic regions from SNP 149973 to 150573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:24,951 DEBUG Processing 391/1127 atomic regions from SNP 117018 to 117618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:24,966 DEBUG Processing 418/1016 atomic regions from SNP 125204 to 125804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,003 DEBUG Processing 299/642 atomic regions from SNP 89566 to 90166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,040 DEBUG Processing 512/850 atomic regions from SNP 153409 to 154009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,133 DEBUG Processing 501/883 atomic regions from SNP 150273 to 150873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,231 DEBUG Processing 392/1127 atomic regions from SNP 117318 to 117918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,247 DEBUG Processing 300/642 atomic regions from SNP 89866 to 90466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,262 DEBUG Processing 419/1016 atomic regions from SNP 125504 to 126104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,281 DEBUG Processing 513/850 atomic regions from SNP 153709 to 154309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,379 DEBUG Processing 502/883 atomic regions from SNP 150573 to 151173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,493 DEBUG Processing 301/642 atomic regions from SNP 90166 to 90766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,517 DEBUG Processing 393/1127 atomic regions from SNP 117618 to 118218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,523 DEBUG Processing 514/850 atomic regions from SNP 154009 to 154609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,531 DEBUG Processing 420/1016 atomic regions from SNP 125804 to 126404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,625 DEBUG Processing 503/883 atomic regions from SNP 150873 to 151473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,738 DEBUG Processing 302/642 atomic regions from SNP 90466 to 91066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:25,768 DEBUG Processing 515/850 atomic regions from SNP 154309 to 154909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:25,805 DEBUG Processing 421/1016 atomic regions from SNP 126104 to 126704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:25,806 DEBUG Processing 394/1127 atomic regions from SNP 117918 to 118518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:25,878 DEBUG Processing 504/883 atomic regions from SNP 151173 to 151773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:25,993 DEBUG Processing 303/642 atomic regions from SNP 90766 to 91366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,029 DEBUG Processing 516/850 atomic regions from SNP 154609 to 155209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,081 DEBUG Processing 422/1016 atomic regions from SNP 126404 to 127004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,095 DEBUG Processing 395/1127 atomic regions from SNP 118218 to 118818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,135 DEBUG Processing 505/883 atomic regions from SNP 151473 to 152073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,250 DEBUG Processing 304/642 atomic regions from SNP 91066 to 91666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,288 DEBUG Processing 517/850 atomic regions from SNP 154909 to 155509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,353 DEBUG Processing 423/1016 atomic regions from SNP 126704 to 127304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,373 DEBUG Processing 396/1127 atomic regions from SNP 118518 to 119118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,405 DEBUG Processing 506/883 atomic regions from SNP 151773 to 152373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,512 DEBUG Processing 305/642 atomic regions from SNP 91366 to 91966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,535 DEBUG Processing 518/850 atomic regions from SNP 155209 to 155809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,626 DEBUG Processing 424/1016 atomic regions from SNP 127004 to 127604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,650 DEBUG Processing 397/1127 atomic regions from SNP 118818 to 119418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,682 DEBUG Processing 507/883 atomic regions from SNP 152073 to 152673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:26,759 DEBUG Processing 306/642 atomic regions from SNP 91666 to 92266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:26,780 DEBUG Processing 519/850 atomic regions from SNP 155509 to 156109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:26,894 DEBUG Processing 425/1016 atomic regions from SNP 127304 to 127904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:26,924 DEBUG Processing 398/1127 atomic regions from SNP 119118 to 119718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:26,965 DEBUG Processing 508/883 atomic regions from SNP 152373 to 152973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,005 DEBUG Processing 307/642 atomic regions from SNP 91966 to 92566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,022 DEBUG Processing 520/850 atomic regions from SNP 155809 to 156409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,166 DEBUG Processing 426/1016 atomic regions from SNP 127604 to 128204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,197 DEBUG Processing 399/1127 atomic regions from SNP 119418 to 120018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,249 DEBUG Processing 509/883 atomic regions from SNP 152673 to 153273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,250 DEBUG Processing 308/642 atomic regions from SNP 92266 to 92866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,264 DEBUG Processing 521/850 atomic regions from SNP 156109 to 156709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,434 DEBUG Processing 427/1016 atomic regions from SNP 127904 to 128504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,470 DEBUG Processing 400/1127 atomic regions from SNP 119718 to 120318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,501 DEBUG Processing 309/642 atomic regions from SNP 92566 to 93166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,511 DEBUG Processing 522/850 atomic regions from SNP 156409 to 157009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,540 DEBUG Processing 510/883 atomic regions from SNP 152973 to 153573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,708 DEBUG Processing 428/1016 atomic regions from SNP 128204 to 128804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:27,749 DEBUG Processing 401/1127 atomic regions from SNP 120018 to 120618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:27,753 DEBUG Processing 310/642 atomic regions from SNP 92866 to 93466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:27,759 DEBUG Processing 523/850 atomic regions from SNP 156709 to 157309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:27,824 DEBUG Processing 511/883 atomic regions from SNP 153273 to 153873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:27,982 DEBUG Processing 429/1016 atomic regions from SNP 128504 to 129104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,007 DEBUG Processing 524/850 atomic regions from SNP 157009 to 157609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,008 DEBUG Processing 311/642 atomic regions from SNP 93166 to 93766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,050 DEBUG Processing 402/1127 atomic regions from SNP 120318 to 120918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,100 DEBUG Processing 512/883 atomic regions from SNP 153573 to 154173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,257 DEBUG Processing 525/850 atomic regions from SNP 157309 to 157909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,265 DEBUG Processing 312/642 atomic regions from SNP 93466 to 94066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,288 DEBUG Processing 430/1016 atomic regions from SNP 128804 to 129404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,356 DEBUG Processing 403/1127 atomic regions from SNP 120618 to 121218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,384 DEBUG Processing 513/883 atomic regions from SNP 153873 to 154473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,503 DEBUG Processing 526/850 atomic regions from SNP 157609 to 158209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,518 DEBUG Processing 313/642 atomic regions from SNP 93766 to 94366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,585 DEBUG Processing 431/1016 atomic regions from SNP 129104 to 129704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,640 DEBUG Processing 404/1127 atomic regions from SNP 120918 to 121518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,663 DEBUG Processing 514/883 atomic regions from SNP 154173 to 154773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,742 DEBUG Processing 527/850 atomic regions from SNP 157909 to 158509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:28,763 DEBUG Processing 314/642 atomic regions from SNP 94066 to 94666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:28,865 DEBUG Processing 432/1016 atomic regions from SNP 129404 to 130004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:28,921 DEBUG Processing 405/1127 atomic regions from SNP 121218 to 121818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:28,946 DEBUG Processing 515/883 atomic regions from SNP 154473 to 155073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:28,981 DEBUG Processing 528/850 atomic regions from SNP 158209 to 158809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,010 DEBUG Processing 315/642 atomic regions from SNP 94366 to 94966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,136 DEBUG Processing 433/1016 atomic regions from SNP 129704 to 130304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,191 DEBUG Processing 406/1127 atomic regions from SNP 121518 to 122118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,223 DEBUG Processing 529/850 atomic regions from SNP 158509 to 159109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,226 DEBUG Processing 516/883 atomic regions from SNP 154773 to 155373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,254 DEBUG Processing 316/642 atomic regions from SNP 94666 to 95266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,413 DEBUG Processing 434/1016 atomic regions from SNP 130004 to 130604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,458 DEBUG Processing 407/1127 atomic regions from SNP 121818 to 122418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,478 DEBUG Processing 530/850 atomic regions from SNP 158809 to 159409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,507 DEBUG Processing 317/642 atomic regions from SNP 94966 to 95566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,519 DEBUG Processing 517/883 atomic regions from SNP 155073 to 155673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,682 DEBUG Processing 435/1016 atomic regions from SNP 130304 to 130904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,724 DEBUG Processing 408/1127 atomic regions from SNP 122118 to 122718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:29,726 DEBUG Processing 531/850 atomic regions from SNP 159109 to 159709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,761 DEBUG Processing 318/642 atomic regions from SNP 95266 to 95866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:29,812 DEBUG Processing 518/883 atomic regions from SNP 155373 to 155973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:29,978 DEBUG Processing 532/850 atomic regions from SNP 159409 to 160009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:29,981 DEBUG Processing 436/1016 atomic regions from SNP 130604 to 131204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:29,991 DEBUG Processing 409/1127 atomic regions from SNP 122418 to 123018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,022 DEBUG Processing 319/642 atomic regions from SNP 95566 to 96166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,105 DEBUG Processing 519/883 atomic regions from SNP 155673 to 156273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,234 DEBUG Processing 533/850 atomic regions from SNP 159709 to 160309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,270 DEBUG Processing 410/1127 atomic regions from SNP 122718 to 123318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,280 DEBUG Processing 437/1016 atomic regions from SNP 130904 to 131504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,289 DEBUG Processing 320/642 atomic regions from SNP 95866 to 96466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,384 DEBUG Processing 520/883 atomic regions from SNP 155973 to 156573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,477 DEBUG Processing 534/850 atomic regions from SNP 160009 to 160609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,545 DEBUG Processing 411/1127 atomic regions from SNP 123018 to 123618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,551 DEBUG Processing 321/642 atomic regions from SNP 96166 to 96766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,568 DEBUG Processing 438/1016 atomic regions from SNP 131204 to 131804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,665 DEBUG Processing 521/883 atomic regions from SNP 156273 to 156873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,745 DEBUG Processing 535/850 atomic regions from SNP 160309 to 160909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:30,805 DEBUG Processing 322/642 atomic regions from SNP 96466 to 97066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:30,832 DEBUG Processing 412/1127 atomic regions from SNP 123318 to 123918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:30,850 DEBUG Processing 439/1016 atomic regions from SNP 131504 to 132104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:30,943 DEBUG Processing 522/883 atomic regions from SNP 156573 to 157173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:30,998 DEBUG Processing 536/850 atomic regions from SNP 160609 to 161209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,052 DEBUG Processing 323/642 atomic regions from SNP 96766 to 97366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,119 DEBUG Processing 413/1127 atomic regions from SNP 123618 to 124218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,129 DEBUG Processing 440/1016 atomic regions from SNP 131804 to 132404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,194 DEBUG Processing 523/883 atomic regions from SNP 156873 to 157473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,257 DEBUG Processing 537/850 atomic regions from SNP 160909 to 161509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,296 DEBUG Processing 324/642 atomic regions from SNP 97066 to 97666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,411 DEBUG Processing 441/1016 atomic regions from SNP 132104 to 132704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,416 DEBUG Processing 414/1127 atomic regions from SNP 123918 to 124518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,456 DEBUG Processing 524/883 atomic regions from SNP 157173 to 157773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,524 DEBUG Processing 538/850 atomic regions from SNP 161209 to 161809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,563 DEBUG Processing 325/642 atomic regions from SNP 97366 to 97966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,715 DEBUG Processing 442/1016 atomic regions from SNP 132404 to 133004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:31,742 DEBUG Processing 415/1127 atomic regions from SNP 124218 to 124818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:31,749 DEBUG Processing 525/883 atomic regions from SNP 157473 to 158073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:31,791 DEBUG Processing 539/850 atomic regions from SNP 161509 to 162109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:31,841 DEBUG Processing 326/642 atomic regions from SNP 97666 to 98266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:31,990 DEBUG Processing 443/1016 atomic regions from SNP 132704 to 133304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,016 DEBUG Processing 526/883 atomic regions from SNP 157773 to 158373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,041 DEBUG Processing 540/850 atomic regions from SNP 161809 to 162409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,051 DEBUG Processing 416/1127 atomic regions from SNP 124518 to 125118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,103 DEBUG Processing 327/642 atomic regions from SNP 97966 to 98566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,183 DEBUG Segmenting atomic regions: 2025-01-31 09:45:32,264 DEBUG Processing 444/1016 atomic regions from SNP 133004 to 133604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,287 DEBUG Processing 541/850 atomic regions from SNP 162109 to 162709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,290 DEBUG Processing 527/883 atomic regions from SNP 158073 to 158673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,297 DEBUG Processing 1/229 atomic regions from SNP 0 to 602 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,353 DEBUG Processing 328/642 atomic regions from SNP 98266 to 98866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,356 DEBUG Processing 417/1127 atomic regions from SNP 124818 to 125418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,544 DEBUG Processing 542/850 atomic regions from SNP 162409 to 163009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,544 DEBUG Processing 445/1016 atomic regions from SNP 133304 to 133904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,555 DEBUG Processing 2/229 atomic regions from SNP 302 to 904 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,566 DEBUG Processing 528/883 atomic regions from SNP 158373 to 158973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,609 DEBUG Processing 329/642 atomic regions from SNP 98566 to 99166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,670 DEBUG Processing 418/1127 atomic regions from SNP 125118 to 125718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:32,797 DEBUG Processing 543/850 atomic regions from SNP 162709 to 163309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:32,810 DEBUG Processing 3/229 atomic regions from SNP 604 to 1206 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:32,832 DEBUG Processing 446/1016 atomic regions from SNP 133604 to 134204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:32,836 DEBUG Processing 529/883 atomic regions from SNP 158673 to 159273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:32,869 DEBUG Processing 330/642 atomic regions from SNP 98866 to 99466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:32,974 DEBUG Processing 419/1127 atomic regions from SNP 125418 to 126018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,048 DEBUG Processing 544/850 atomic regions from SNP 163009 to 163609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,062 DEBUG Processing 4/229 atomic regions from SNP 906 to 1508 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,103 DEBUG Processing 530/883 atomic regions from SNP 158973 to 159573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,121 DEBUG Processing 447/1016 atomic regions from SNP 133904 to 134504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,132 DEBUG Processing 331/642 atomic regions from SNP 99166 to 99766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,276 DEBUG Processing 420/1127 atomic regions from SNP 125718 to 126318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,291 DEBUG Processing 545/850 atomic regions from SNP 163309 to 163909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,302 DEBUG Processing 5/229 atomic regions from SNP 1208 to 1810 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,372 DEBUG Processing 531/883 atomic regions from SNP 159273 to 159873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,398 DEBUG Processing 332/642 atomic regions from SNP 99466 to 100066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,416 DEBUG Processing 448/1016 atomic regions from SNP 134204 to 134804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,530 DEBUG Processing 546/850 atomic regions from SNP 163609 to 164209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,535 DEBUG Processing 6/229 atomic regions from SNP 1510 to 2112 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,581 DEBUG Processing 421/1127 atomic regions from SNP 126018 to 126618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,637 DEBUG Processing 532/883 atomic regions from SNP 159573 to 160173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,659 DEBUG Processing 333/642 atomic regions from SNP 99766 to 100366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,701 DEBUG Processing 449/1016 atomic regions from SNP 134504 to 135104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:33,769 DEBUG Processing 547/850 atomic regions from SNP 163909 to 164509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:33,774 DEBUG Processing 7/229 atomic regions from SNP 1812 to 2414 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:33,887 DEBUG Processing 422/1127 atomic regions from SNP 126318 to 126918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:33,914 DEBUG Processing 334/642 atomic regions from SNP 100066 to 100666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:33,917 DEBUG Processing 533/883 atomic regions from SNP 159873 to 160473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:33,993 DEBUG Processing 450/1016 atomic regions from SNP 134804 to 135404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,025 DEBUG Processing 548/850 atomic regions from SNP 164209 to 164809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,028 DEBUG Processing 8/229 atomic regions from SNP 2114 to 2716 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,169 DEBUG Processing 335/642 atomic regions from SNP 100366 to 100966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,175 DEBUG Processing 534/883 atomic regions from SNP 160173 to 160773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,184 DEBUG Processing 423/1127 atomic regions from SNP 126618 to 127218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,280 DEBUG Processing 9/229 atomic regions from SNP 2416 to 3018 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,282 DEBUG Processing 549/850 atomic regions from SNP 164509 to 165109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,282 DEBUG Processing 451/1016 atomic regions from SNP 135104 to 135704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,420 DEBUG Processing 535/883 atomic regions from SNP 160473 to 161073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,428 DEBUG Processing 336/642 atomic regions from SNP 100666 to 101266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,467 DEBUG Processing 424/1127 atomic regions from SNP 126918 to 127518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,530 DEBUG Processing 10/229 atomic regions from SNP 2718 to 3320 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,538 DEBUG Processing 550/850 atomic regions from SNP 164809 to 165409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,567 DEBUG Processing 452/1016 atomic regions from SNP 135404 to 136004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,670 DEBUG Processing 536/883 atomic regions from SNP 160773 to 161373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,686 DEBUG Processing 337/642 atomic regions from SNP 100966 to 101566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:34,749 DEBUG Processing 425/1127 atomic regions from SNP 127218 to 127818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:34,770 DEBUG Processing 11/229 atomic regions from SNP 3020 to 3622 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:34,785 DEBUG Processing 551/850 atomic regions from SNP 165109 to 165709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:34,843 DEBUG Processing 453/1016 atomic regions from SNP 135704 to 136304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:34,921 DEBUG Processing 537/883 atomic regions from SNP 161073 to 161673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:34,934 DEBUG Processing 338/642 atomic regions from SNP 101266 to 101866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,011 DEBUG Processing 12/229 atomic regions from SNP 3322 to 3924 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,029 DEBUG Processing 426/1127 atomic regions from SNP 127518 to 128118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,033 DEBUG Processing 552/850 atomic regions from SNP 165409 to 166009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,121 DEBUG Processing 454/1016 atomic regions from SNP 136004 to 136604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,172 DEBUG Processing 538/883 atomic regions from SNP 161373 to 161973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,187 DEBUG Processing 339/642 atomic regions from SNP 101566 to 102166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,258 DEBUG Processing 13/229 atomic regions from SNP 3624 to 4226 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,282 DEBUG Processing 553/850 atomic regions from SNP 165709 to 166309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,306 DEBUG Processing 427/1127 atomic regions from SNP 127818 to 128418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,398 DEBUG Processing 455/1016 atomic regions from SNP 136304 to 136904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,427 DEBUG Processing 539/883 atomic regions from SNP 161673 to 162273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,437 DEBUG Processing 340/642 atomic regions from SNP 101866 to 102466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,505 DEBUG Processing 14/229 atomic regions from SNP 3926 to 4528 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,533 DEBUG Processing 554/850 atomic regions from SNP 166009 to 166609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,582 DEBUG Processing 428/1127 atomic regions from SNP 128118 to 128718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,672 DEBUG Processing 456/1016 atomic regions from SNP 136604 to 137204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,687 DEBUG Processing 341/642 atomic regions from SNP 102166 to 102766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,696 DEBUG Processing 540/883 atomic regions from SNP 161973 to 162573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,750 DEBUG Processing 15/229 atomic regions from SNP 4228 to 4830 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:35,780 DEBUG Processing 555/850 atomic regions from SNP 166309 to 166909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:35,864 DEBUG Processing 429/1127 atomic regions from SNP 128418 to 129018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:35,933 DEBUG Processing 342/642 atomic regions from SNP 102466 to 103066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:35,943 DEBUG Processing 457/1016 atomic regions from SNP 136904 to 137504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:35,973 DEBUG Processing 541/883 atomic regions from SNP 162273 to 162873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:35,990 DEBUG Processing 16/229 atomic regions from SNP 4530 to 5132 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,030 DEBUG Processing 556/850 atomic regions from SNP 166609 to 167209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,152 DEBUG Processing 430/1127 atomic regions from SNP 128718 to 129318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,186 DEBUG Processing 343/642 atomic regions from SNP 102766 to 103366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,231 DEBUG Processing 17/229 atomic regions from SNP 4832 to 5434 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,253 DEBUG Processing 542/883 atomic regions from SNP 162573 to 163173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,280 DEBUG Processing 458/1016 atomic regions from SNP 137204 to 137804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,298 DEBUG Processing 557/850 atomic regions from SNP 166909 to 167509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,435 DEBUG Processing 344/642 atomic regions from SNP 103066 to 103666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,443 DEBUG Processing 431/1127 atomic regions from SNP 129018 to 129618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,469 DEBUG Processing 18/229 atomic regions from SNP 5134 to 5736 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,529 DEBUG Processing 543/883 atomic regions from SNP 162873 to 163473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,572 DEBUG Processing 558/850 atomic regions from SNP 167209 to 167809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,585 DEBUG Processing 459/1016 atomic regions from SNP 137504 to 138104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,686 DEBUG Processing 345/642 atomic regions from SNP 103366 to 103966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,711 DEBUG Processing 19/229 atomic regions from SNP 5436 to 6038 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:36,732 DEBUG Processing 432/1127 atomic regions from SNP 129318 to 129918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:36,800 DEBUG Processing 544/883 atomic regions from SNP 163173 to 163773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:36,837 DEBUG Processing 559/850 atomic regions from SNP 167509 to 168109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:36,847 DEBUG Processing 460/1016 atomic regions from SNP 137804 to 138404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:36,939 DEBUG Processing 346/642 atomic regions from SNP 103666 to 104266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:36,952 DEBUG Processing 20/229 atomic regions from SNP 5738 to 6340 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,018 DEBUG Processing 433/1127 atomic regions from SNP 129618 to 130218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,059 DEBUG Processing 545/883 atomic regions from SNP 163473 to 164073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,089 DEBUG Processing 560/850 atomic regions from SNP 167809 to 168409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,117 DEBUG Processing 461/1016 atomic regions from SNP 138104 to 138704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,188 DEBUG Processing 347/642 atomic regions from SNP 103966 to 104566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,193 DEBUG Processing 21/229 atomic regions from SNP 6040 to 6642 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,305 DEBUG Processing 434/1127 atomic regions from SNP 129918 to 130518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,334 DEBUG Processing 561/850 atomic regions from SNP 168109 to 168709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,339 DEBUG Processing 546/883 atomic regions from SNP 163773 to 164373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,391 DEBUG Processing 462/1016 atomic regions from SNP 138404 to 139004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,426 DEBUG Processing 22/229 atomic regions from SNP 6342 to 6944 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,430 DEBUG Processing 348/642 atomic regions from SNP 104266 to 104866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,584 DEBUG Processing 562/850 atomic regions from SNP 168409 to 169009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,588 DEBUG Processing 435/1127 atomic regions from SNP 130218 to 130818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,628 DEBUG Processing 547/883 atomic regions from SNP 164073 to 164673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,660 DEBUG Processing 23/229 atomic regions from SNP 6644 to 7246 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,664 DEBUG Processing 463/1016 atomic regions from SNP 138704 to 139304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:37,673 DEBUG Processing 349/642 atomic regions from SNP 104566 to 105166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,839 DEBUG Processing 563/850 atomic regions from SNP 168709 to 169309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:37,878 DEBUG Processing 436/1127 atomic regions from SNP 130518 to 131118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:37,898 DEBUG Processing 24/229 atomic regions from SNP 6946 to 7548 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:37,912 DEBUG Processing 548/883 atomic regions from SNP 164373 to 164973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:37,919 DEBUG Processing 350/642 atomic regions from SNP 104866 to 105466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:37,935 DEBUG Processing 464/1016 atomic regions from SNP 139004 to 139604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,090 DEBUG Processing 564/850 atomic regions from SNP 169009 to 169609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,145 DEBUG Processing 25/229 atomic regions from SNP 7248 to 7850 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,171 DEBUG Processing 437/1127 atomic regions from SNP 130818 to 131418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,173 DEBUG Processing 351/642 atomic regions from SNP 105166 to 105766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,175 DEBUG Processing 549/883 atomic regions from SNP 164673 to 165273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,210 DEBUG Processing 465/1016 atomic regions from SNP 139304 to 139904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,334 DEBUG Processing 565/850 atomic regions from SNP 169309 to 169909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,390 DEBUG Processing 26/229 atomic regions from SNP 7550 to 8152 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,427 DEBUG Processing 352/642 atomic regions from SNP 105466 to 106066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,442 DEBUG Processing 550/883 atomic regions from SNP 164973 to 165573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,454 DEBUG Processing 438/1127 atomic regions from SNP 131118 to 131718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,485 DEBUG Processing 466/1016 atomic regions from SNP 139604 to 140204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,579 DEBUG Processing 566/850 atomic regions from SNP 169609 to 170209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,631 DEBUG Processing 27/229 atomic regions from SNP 7852 to 8454 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,676 DEBUG Processing 353/642 atomic regions from SNP 105766 to 106366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:38,730 DEBUG Processing 551/883 atomic regions from SNP 165273 to 165873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:38,735 DEBUG Processing 439/1127 atomic regions from SNP 131418 to 132018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:38,759 DEBUG Processing 467/1016 atomic regions from SNP 139904 to 140504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:38,840 DEBUG Processing 567/850 atomic regions from SNP 169909 to 170509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:38,867 DEBUG Processing 28/229 atomic regions from SNP 8154 to 8756 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:38,923 DEBUG Processing 354/642 atomic regions from SNP 106066 to 106666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,010 DEBUG Processing 552/883 atomic regions from SNP 165573 to 166173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,019 DEBUG Processing 440/1127 atomic regions from SNP 131718 to 132318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,038 DEBUG Processing 468/1016 atomic regions from SNP 140204 to 140804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,109 DEBUG Processing 29/229 atomic regions from SNP 8456 to 9058 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,116 DEBUG Processing 568/850 atomic regions from SNP 170209 to 170809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,167 DEBUG Processing 355/642 atomic regions from SNP 106366 to 106966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,262 DEBUG Processing 553/883 atomic regions from SNP 165873 to 166473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,302 DEBUG Processing 441/1127 atomic regions from SNP 132018 to 132618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,312 DEBUG Processing 469/1016 atomic regions from SNP 140504 to 141104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,358 DEBUG Processing 30/229 atomic regions from SNP 8758 to 9360 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,387 DEBUG Processing 569/850 atomic regions from SNP 170509 to 171109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,419 DEBUG Processing 356/642 atomic regions from SNP 106666 to 107266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,513 DEBUG Processing 554/883 atomic regions from SNP 166173 to 166773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,587 DEBUG Processing 442/1127 atomic regions from SNP 132318 to 132918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,592 DEBUG Processing 470/1016 atomic regions from SNP 140804 to 141404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,608 DEBUG Processing 31/229 atomic regions from SNP 9060 to 9662 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,639 DEBUG Processing 570/850 atomic regions from SNP 170809 to 171409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,682 DEBUG Processing 357/642 atomic regions from SNP 106966 to 107566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:39,756 DEBUG Processing 555/883 atomic regions from SNP 166473 to 167073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:39,855 DEBUG Processing 32/229 atomic regions from SNP 9362 to 9964 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:39,873 DEBUG Processing 471/1016 atomic regions from SNP 141104 to 141704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:39,876 DEBUG Processing 443/1127 atomic regions from SNP 132618 to 133218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:39,896 DEBUG Processing 571/850 atomic regions from SNP 171109 to 171709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:39,949 DEBUG Processing 358/642 atomic regions from SNP 107266 to 107866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,024 DEBUG Processing 556/883 atomic regions from SNP 166773 to 167373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,097 DEBUG Processing 33/229 atomic regions from SNP 9664 to 10266 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,150 DEBUG Processing 572/850 atomic regions from SNP 171409 to 172009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,156 DEBUG Processing 472/1016 atomic regions from SNP 141404 to 142004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,165 DEBUG Processing 444/1127 atomic regions from SNP 132918 to 133518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,222 DEBUG Processing 359/642 atomic regions from SNP 107566 to 108166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,309 DEBUG Processing 557/883 atomic regions from SNP 167073 to 167673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,330 DEBUG Processing 34/229 atomic regions from SNP 9966 to 10568 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,397 DEBUG Processing 573/850 atomic regions from SNP 171709 to 172309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,435 DEBUG Processing 473/1016 atomic regions from SNP 141704 to 142304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,457 DEBUG Processing 445/1127 atomic regions from SNP 133218 to 133818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,504 DEBUG Processing 360/642 atomic regions from SNP 107866 to 108466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,571 DEBUG Processing 35/229 atomic regions from SNP 10268 to 10870 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,605 DEBUG Processing 558/883 atomic regions from SNP 167373 to 167973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,642 DEBUG Processing 574/850 atomic regions from SNP 172009 to 172609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,715 DEBUG Processing 474/1016 atomic regions from SNP 142004 to 142604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:40,745 DEBUG Processing 446/1127 atomic regions from SNP 133518 to 134118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:40,791 DEBUG Processing 361/642 atomic regions from SNP 108166 to 108766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:40,828 DEBUG Processing 36/229 atomic regions from SNP 10570 to 11172 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:40,896 DEBUG Processing 559/883 atomic regions from SNP 167673 to 168273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:40,899 DEBUG Processing 575/850 atomic regions from SNP 172309 to 172909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:40,996 DEBUG Processing 475/1016 atomic regions from SNP 142304 to 142904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,037 DEBUG Processing 447/1127 atomic regions from SNP 133818 to 134418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,059 DEBUG Processing 362/642 atomic regions from SNP 108466 to 109066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,072 DEBUG Processing 37/229 atomic regions from SNP 10872 to 11474 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,147 DEBUG Processing 576/850 atomic regions from SNP 172609 to 173209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,164 DEBUG Processing 560/883 atomic regions from SNP 167973 to 168573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,267 DEBUG Processing 476/1016 atomic regions from SNP 142604 to 143204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,316 DEBUG Processing 38/229 atomic regions from SNP 11174 to 11776 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,326 DEBUG Processing 363/642 atomic regions from SNP 108766 to 109366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,329 DEBUG Processing 448/1127 atomic regions from SNP 134118 to 134718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,404 DEBUG Processing 577/850 atomic regions from SNP 172909 to 173509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,457 DEBUG Processing 561/883 atomic regions from SNP 168273 to 168873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,544 DEBUG Processing 477/1016 atomic regions from SNP 142904 to 143504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,557 DEBUG Processing 39/229 atomic regions from SNP 11476 to 12078 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,594 DEBUG Processing 364/642 atomic regions from SNP 109066 to 109666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,625 DEBUG Processing 449/1127 atomic regions from SNP 134418 to 135018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,663 DEBUG Processing 578/850 atomic regions from SNP 173209 to 173809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:41,740 DEBUG Processing 562/883 atomic regions from SNP 168573 to 169173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:41,786 DEBUG Processing 40/229 atomic regions from SNP 11778 to 12380 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:41,810 DEBUG Processing 478/1016 atomic regions from SNP 143204 to 143804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:41,870 DEBUG Processing 365/642 atomic regions from SNP 109366 to 109966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:41,915 DEBUG Processing 450/1127 atomic regions from SNP 134718 to 135318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:41,926 DEBUG Processing 579/850 atomic regions from SNP 173509 to 174109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,004 DEBUG Processing 563/883 atomic regions from SNP 168873 to 169473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,021 DEBUG Processing 41/229 atomic regions from SNP 12080 to 12682 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,077 DEBUG Processing 479/1016 atomic regions from SNP 143504 to 144104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,148 DEBUG Processing 366/642 atomic regions from SNP 109666 to 110266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,189 DEBUG Processing 580/850 atomic regions from SNP 173809 to 174409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,207 DEBUG Processing 451/1127 atomic regions from SNP 135018 to 135618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,266 DEBUG Processing 42/229 atomic regions from SNP 12382 to 12984 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,276 DEBUG Processing 564/883 atomic regions from SNP 169173 to 169773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,346 DEBUG Processing 480/1016 atomic regions from SNP 143804 to 144404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,408 DEBUG Processing 367/642 atomic regions from SNP 109966 to 110566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,434 DEBUG Processing 581/850 atomic regions from SNP 174109 to 174709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,491 DEBUG Processing 452/1127 atomic regions from SNP 135318 to 135918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,517 DEBUG Processing 43/229 atomic regions from SNP 12684 to 13286 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,553 DEBUG Processing 565/883 atomic regions from SNP 169473 to 170073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,618 DEBUG Processing 481/1016 atomic regions from SNP 144104 to 144704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,653 DEBUG Processing 368/642 atomic regions from SNP 110266 to 110866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,702 DEBUG Processing 582/850 atomic regions from SNP 174409 to 175009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:42,759 DEBUG Processing 44/229 atomic regions from SNP 12986 to 13588 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:42,774 DEBUG Processing 453/1127 atomic regions from SNP 135618 to 136218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:42,833 DEBUG Processing 566/883 atomic regions from SNP 169773 to 170373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:42,900 DEBUG Processing 369/642 atomic regions from SNP 110566 to 111166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:42,914 DEBUG Processing 482/1016 atomic regions from SNP 144404 to 145004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:42,976 DEBUG Processing 583/850 atomic regions from SNP 174709 to 175309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,007 DEBUG Processing 45/229 atomic regions from SNP 13288 to 13889 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,058 DEBUG Processing 454/1127 atomic regions from SNP 135918 to 136518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,121 DEBUG Processing 567/883 atomic regions from SNP 170073 to 170673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,146 DEBUG Processing 370/642 atomic regions from SNP 110866 to 111466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,222 DEBUG Processing 483/1016 atomic regions from SNP 144704 to 145304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,230 DEBUG Processing 584/850 atomic regions from SNP 175009 to 175609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,282 DEBUG Processing 46/229 atomic regions from SNP 13589 to 14190 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,344 DEBUG Processing 455/1127 atomic regions from SNP 136218 to 136818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,394 DEBUG Processing 568/883 atomic regions from SNP 170373 to 170973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,401 DEBUG Processing 371/642 atomic regions from SNP 111166 to 111766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,492 DEBUG Processing 585/850 atomic regions from SNP 175309 to 175909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,524 DEBUG Processing 47/229 atomic regions from SNP 13890 to 14491 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,531 DEBUG Processing 484/1016 atomic regions from SNP 145004 to 145604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,627 DEBUG Processing 456/1127 atomic regions from SNP 136518 to 137118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,662 DEBUG Processing 372/642 atomic regions from SNP 111466 to 112066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,671 DEBUG Processing 569/883 atomic regions from SNP 170673 to 171273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:43,750 DEBUG Processing 586/850 atomic regions from SNP 175609 to 176209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:43,775 DEBUG Processing 48/229 atomic regions from SNP 14191 to 14792 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:43,819 DEBUG Processing 485/1016 atomic regions from SNP 145304 to 145904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:43,907 DEBUG Processing 373/642 atomic regions from SNP 111766 to 112366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:43,911 DEBUG Processing 457/1127 atomic regions from SNP 136818 to 137418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:43,930 DEBUG Processing 570/883 atomic regions from SNP 170973 to 171573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,015 DEBUG Processing 49/229 atomic regions from SNP 14492 to 15093 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,028 DEBUG Processing 587/850 atomic regions from SNP 175909 to 176509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,093 DEBUG Processing 486/1016 atomic regions from SNP 145604 to 146204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,155 DEBUG Processing 374/642 atomic regions from SNP 112066 to 112666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,182 DEBUG Processing 571/883 atomic regions from SNP 171273 to 171873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,194 DEBUG Processing 458/1127 atomic regions from SNP 137118 to 137718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,256 DEBUG Processing 50/229 atomic regions from SNP 14793 to 15394 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,286 DEBUG Processing 588/850 atomic regions from SNP 176209 to 176809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,368 DEBUG Processing 487/1016 atomic regions from SNP 145904 to 146504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,425 DEBUG Processing 375/642 atomic regions from SNP 112366 to 112966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,454 DEBUG Processing 572/883 atomic regions from SNP 171573 to 172173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,482 DEBUG Processing 459/1127 atomic regions from SNP 137418 to 138018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,504 DEBUG Processing 51/229 atomic regions from SNP 15094 to 15695 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,533 DEBUG Processing 589/850 atomic regions from SNP 176509 to 177109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,639 DEBUG Processing 488/1016 atomic regions from SNP 146204 to 146804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,690 DEBUG Processing 376/642 atomic regions from SNP 112666 to 113266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,735 DEBUG Processing 573/883 atomic regions from SNP 171873 to 172473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:44,746 DEBUG Processing 52/229 atomic regions from SNP 15395 to 15996 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:44,766 DEBUG Processing 460/1127 atomic regions from SNP 137718 to 138318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:44,783 DEBUG Processing 590/850 atomic regions from SNP 176809 to 177409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:44,917 DEBUG Processing 489/1016 atomic regions from SNP 146504 to 147104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:44,963 DEBUG Processing 377/642 atomic regions from SNP 112966 to 113566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:44,988 DEBUG Processing 53/229 atomic regions from SNP 15696 to 16297 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,023 DEBUG Processing 574/883 atomic regions from SNP 172173 to 172773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,038 DEBUG Processing 591/850 atomic regions from SNP 177109 to 177709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,048 DEBUG Processing 461/1127 atomic regions from SNP 138018 to 138618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,188 DEBUG Processing 490/1016 atomic regions from SNP 146804 to 147404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,208 DEBUG Processing 378/642 atomic regions from SNP 113266 to 113866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,222 DEBUG Processing 54/229 atomic regions from SNP 15997 to 16598 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,284 DEBUG Processing 592/850 atomic regions from SNP 177409 to 178009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,297 DEBUG Processing 575/883 atomic regions from SNP 172473 to 173073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,325 DEBUG Processing 462/1127 atomic regions from SNP 138318 to 138918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,456 DEBUG Processing 379/642 atomic regions from SNP 113566 to 114166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,459 DEBUG Processing 491/1016 atomic regions from SNP 147104 to 147704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,459 DEBUG Processing 55/229 atomic regions from SNP 16298 to 16899 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,529 DEBUG Processing 593/850 atomic regions from SNP 177709 to 178309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,549 DEBUG Processing 576/883 atomic regions from SNP 172773 to 173373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,606 DEBUG Processing 463/1127 atomic regions from SNP 138618 to 139218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,703 DEBUG Processing 56/229 atomic regions from SNP 16599 to 17200 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,713 DEBUG Processing 380/642 atomic regions from SNP 113866 to 114466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:45,733 DEBUG Processing 492/1016 atomic regions from SNP 147404 to 148004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:45,801 DEBUG Processing 594/850 atomic regions from SNP 178009 to 178609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:45,803 DEBUG Processing 577/883 atomic regions from SNP 173073 to 173673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:45,890 DEBUG Processing 464/1127 atomic regions from SNP 138918 to 139518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:45,943 DEBUG Processing 57/229 atomic regions from SNP 16900 to 17501 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:45,966 DEBUG Processing 381/642 atomic regions from SNP 114166 to 114766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,007 DEBUG Processing 493/1016 atomic regions from SNP 147704 to 148304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,061 DEBUG Processing 578/883 atomic regions from SNP 173373 to 173973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,082 DEBUG Processing 595/850 atomic regions from SNP 178309 to 178909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,179 DEBUG Processing 465/1127 atomic regions from SNP 139218 to 139818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,180 DEBUG Processing 58/229 atomic regions from SNP 17201 to 17802 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,217 DEBUG Processing 382/642 atomic regions from SNP 114466 to 115066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,276 DEBUG Processing 494/1016 atomic regions from SNP 148004 to 148604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,325 DEBUG Processing 579/883 atomic regions from SNP 173673 to 174273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,357 DEBUG Processing 596/850 atomic regions from SNP 178609 to 179209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,412 DEBUG Processing 59/229 atomic regions from SNP 17502 to 18103 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,461 DEBUG Processing 383/642 atomic regions from SNP 114766 to 115366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,486 DEBUG Processing 466/1127 atomic regions from SNP 139518 to 140118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,541 DEBUG Processing 495/1016 atomic regions from SNP 148304 to 148904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,581 DEBUG Processing 580/883 atomic regions from SNP 173973 to 174573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,641 DEBUG Processing 597/850 atomic regions from SNP 178909 to 179509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,650 DEBUG Processing 60/229 atomic regions from SNP 17803 to 18404 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,710 DEBUG Processing 384/642 atomic regions from SNP 115066 to 115666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:46,763 DEBUG Processing 467/1127 atomic regions from SNP 139818 to 140418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:46,806 DEBUG Processing 496/1016 atomic regions from SNP 148604 to 149204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:46,833 DEBUG Processing 581/883 atomic regions from SNP 174273 to 174873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:46,899 DEBUG Processing 61/229 atomic regions from SNP 18104 to 18705 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:46,917 DEBUG Processing 598/850 atomic regions from SNP 179209 to 179809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:46,967 DEBUG Processing 385/642 atomic regions from SNP 115366 to 115966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,047 DEBUG Processing 468/1127 atomic regions from SNP 140118 to 140718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,075 DEBUG Processing 497/1016 atomic regions from SNP 148904 to 149504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,097 DEBUG Processing 582/883 atomic regions from SNP 174573 to 175173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,137 DEBUG Processing 62/229 atomic regions from SNP 18405 to 19006 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,183 DEBUG Processing 599/850 atomic regions from SNP 179509 to 180109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,216 DEBUG Processing 386/642 atomic regions from SNP 115666 to 116266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,326 DEBUG Processing 469/1127 atomic regions from SNP 140418 to 141018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,347 DEBUG Processing 498/1016 atomic regions from SNP 149204 to 149804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,376 DEBUG Processing 63/229 atomic regions from SNP 18706 to 19307 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,384 DEBUG Processing 583/883 atomic regions from SNP 174873 to 175473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,431 DEBUG Processing 600/850 atomic regions from SNP 179809 to 180409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,469 DEBUG Processing 387/642 atomic regions from SNP 115966 to 116566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,607 DEBUG Processing 470/1127 atomic regions from SNP 140718 to 141318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,612 DEBUG Processing 64/229 atomic regions from SNP 19007 to 19608 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,615 DEBUG Processing 499/1016 atomic regions from SNP 149504 to 150104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,661 DEBUG Processing 584/883 atomic regions from SNP 175173 to 175773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,687 DEBUG Processing 601/850 atomic regions from SNP 180109 to 180709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,719 DEBUG Processing 388/642 atomic regions from SNP 116266 to 116866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:47,850 DEBUG Processing 65/229 atomic regions from SNP 19308 to 19909 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:47,888 DEBUG Processing 471/1127 atomic regions from SNP 141018 to 141618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:47,890 DEBUG Processing 500/1016 atomic regions from SNP 149804 to 150404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:47,935 DEBUG Processing 585/883 atomic regions from SNP 175473 to 176073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:47,947 DEBUG Processing 602/850 atomic regions from SNP 180409 to 181009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:47,972 DEBUG Processing 389/642 atomic regions from SNP 116566 to 117166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,094 DEBUG Processing 66/229 atomic regions from SNP 19609 to 20210 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,170 DEBUG Processing 501/1016 atomic regions from SNP 150104 to 150704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,177 DEBUG Processing 472/1127 atomic regions from SNP 141318 to 141918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,198 DEBUG Processing 603/850 atomic regions from SNP 180709 to 181309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,221 DEBUG Processing 586/883 atomic regions from SNP 175773 to 176373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,223 DEBUG Processing 390/642 atomic regions from SNP 116866 to 117466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,326 DEBUG Processing 67/229 atomic regions from SNP 19910 to 20511 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,447 DEBUG Processing 604/850 atomic regions from SNP 181009 to 181609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,453 DEBUG Processing 502/1016 atomic regions from SNP 150404 to 151004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,464 DEBUG Processing 473/1127 atomic regions from SNP 141618 to 142218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,480 DEBUG Processing 391/642 atomic regions from SNP 117166 to 117766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,518 DEBUG Processing 587/883 atomic regions from SNP 176073 to 176673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,557 DEBUG Processing 68/229 atomic regions from SNP 20211 to 20812 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,694 DEBUG Processing 605/850 atomic regions from SNP 181309 to 181909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,729 DEBUG Processing 503/1016 atomic regions from SNP 150704 to 151304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:48,737 DEBUG Processing 392/642 atomic regions from SNP 117466 to 118066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:48,751 DEBUG Processing 474/1127 atomic regions from SNP 141918 to 142518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:48,800 DEBUG Processing 69/229 atomic regions from SNP 20512 to 21113 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:48,817 DEBUG Processing 588/883 atomic regions from SNP 176373 to 176973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:48,937 DEBUG Processing 606/850 atomic regions from SNP 181609 to 182209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:48,992 DEBUG Processing 393/642 atomic regions from SNP 117766 to 118366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,009 DEBUG Processing 504/1016 atomic regions from SNP 151004 to 151604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,038 DEBUG Processing 475/1127 atomic regions from SNP 142218 to 142818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,044 DEBUG Processing 70/229 atomic regions from SNP 20813 to 21414 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,117 DEBUG Processing 589/883 atomic regions from SNP 176673 to 177273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,178 DEBUG Processing 607/850 atomic regions from SNP 181909 to 182509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,238 DEBUG Processing 394/642 atomic regions from SNP 118066 to 118666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,281 DEBUG Processing 505/1016 atomic regions from SNP 151304 to 151904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,283 DEBUG Processing 71/229 atomic regions from SNP 21114 to 21715 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,316 DEBUG Processing 476/1127 atomic regions from SNP 142518 to 143118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,410 DEBUG Processing 590/883 atomic regions from SNP 176973 to 177573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,458 DEBUG Processing 608/850 atomic regions from SNP 182209 to 182809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,487 DEBUG Processing 395/642 atomic regions from SNP 118366 to 118966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,517 DEBUG Processing 72/229 atomic regions from SNP 21415 to 22016 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,548 DEBUG Processing 506/1016 atomic regions from SNP 151604 to 152204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,597 DEBUG Processing 477/1127 atomic regions from SNP 142818 to 143418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,703 DEBUG Processing 591/883 atomic regions from SNP 177273 to 177873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:49,734 DEBUG Processing 609/850 atomic regions from SNP 182509 to 183109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,746 DEBUG Processing 396/642 atomic regions from SNP 118666 to 119266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:49,758 DEBUG Processing 73/229 atomic regions from SNP 21716 to 22317 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:49,813 DEBUG Processing 507/1016 atomic regions from SNP 151904 to 152504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:49,897 DEBUG Processing 478/1127 atomic regions from SNP 143118 to 143718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:49,992 DEBUG Processing 610/850 atomic regions from SNP 182809 to 183409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:49,996 DEBUG Processing 592/883 atomic regions from SNP 177573 to 178173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,006 DEBUG Processing 74/229 atomic regions from SNP 22017 to 22618 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,008 DEBUG Processing 397/642 atomic regions from SNP 118966 to 119566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,076 DEBUG Processing 508/1016 atomic regions from SNP 152204 to 152804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,194 DEBUG Processing 479/1127 atomic regions from SNP 143418 to 144018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,252 DEBUG Processing 611/850 atomic regions from SNP 183109 to 183709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,260 DEBUG Processing 75/229 atomic regions from SNP 22318 to 22919 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,271 DEBUG Processing 398/642 atomic regions from SNP 119266 to 119866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,286 DEBUG Processing 593/883 atomic regions from SNP 177873 to 178473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,341 DEBUG Processing 509/1016 atomic regions from SNP 152504 to 153104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,478 DEBUG Processing 480/1127 atomic regions from SNP 143718 to 144318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,503 DEBUG Processing 612/850 atomic regions from SNP 183409 to 184009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,505 DEBUG Processing 76/229 atomic regions from SNP 22619 to 23220 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,530 DEBUG Processing 399/642 atomic regions from SNP 119566 to 120166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,549 DEBUG Processing 594/883 atomic regions from SNP 178173 to 178773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,601 DEBUG Processing 510/1016 atomic regions from SNP 152804 to 153404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:50,741 DEBUG Processing 77/229 atomic regions from SNP 22920 to 23521 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:50,749 DEBUG Processing 613/850 atomic regions from SNP 183709 to 184309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:50,766 DEBUG Processing 481/1127 atomic regions from SNP 144018 to 144618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:50,788 DEBUG Processing 400/642 atomic regions from SNP 119866 to 120466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:50,817 DEBUG Processing 595/883 atomic regions from SNP 178473 to 179073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:50,864 DEBUG Processing 511/1016 atomic regions from SNP 153104 to 153704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,002 DEBUG Processing 614/850 atomic regions from SNP 184009 to 184609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,007 DEBUG Processing 78/229 atomic regions from SNP 23221 to 23822 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,046 DEBUG Processing 401/642 atomic regions from SNP 120166 to 120766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,057 DEBUG Processing 482/1127 atomic regions from SNP 144318 to 144918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,080 DEBUG Processing 596/883 atomic regions from SNP 178773 to 179373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,127 DEBUG Processing 512/1016 atomic regions from SNP 153404 to 154004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,249 DEBUG Processing 615/850 atomic regions from SNP 184309 to 184909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,252 DEBUG Processing 79/229 atomic regions from SNP 23522 to 24123 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,296 DEBUG Processing 402/642 atomic regions from SNP 120466 to 121066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,330 DEBUG Processing 597/883 atomic regions from SNP 179073 to 179673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,364 DEBUG Processing 483/1127 atomic regions from SNP 144618 to 145218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,400 DEBUG Processing 513/1016 atomic regions from SNP 153704 to 154304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,494 DEBUG Processing 80/229 atomic regions from SNP 23823 to 24424 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,498 DEBUG Processing 616/850 atomic regions from SNP 184609 to 185209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,547 DEBUG Processing 403/642 atomic regions from SNP 120766 to 121366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,580 DEBUG Processing 598/883 atomic regions from SNP 179373 to 179973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,669 DEBUG Processing 484/1127 atomic regions from SNP 144918 to 145518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,680 DEBUG Processing 514/1016 atomic regions from SNP 154004 to 154604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,741 DEBUG Processing 81/229 atomic regions from SNP 24124 to 24725 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:51,763 DEBUG Processing 617/850 atomic regions from SNP 184909 to 185509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:51,828 DEBUG Processing 404/642 atomic regions from SNP 121066 to 121666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:51,832 DEBUG Processing 599/883 atomic regions from SNP 179673 to 180273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:51,981 DEBUG Processing 485/1127 atomic regions from SNP 145218 to 145818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:51,986 DEBUG Processing 515/1016 atomic regions from SNP 154304 to 154904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:51,987 DEBUG Processing 82/229 atomic regions from SNP 24425 to 25026 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,048 DEBUG Processing 618/850 atomic regions from SNP 185209 to 185809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,102 DEBUG Processing 600/883 atomic regions from SNP 179973 to 180573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,103 DEBUG Processing 405/642 atomic regions from SNP 121366 to 121966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,226 DEBUG Processing 83/229 atomic regions from SNP 24726 to 25327 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,290 DEBUG Processing 486/1127 atomic regions from SNP 145518 to 146118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,296 DEBUG Processing 516/1016 atomic regions from SNP 154604 to 155204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,333 DEBUG Processing 619/850 atomic regions from SNP 185509 to 186109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,366 DEBUG Processing 406/642 atomic regions from SNP 121666 to 122266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,368 DEBUG Processing 601/883 atomic regions from SNP 180273 to 180873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,453 DEBUG Processing 84/229 atomic regions from SNP 25027 to 25628 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,564 DEBUG Processing 487/1127 atomic regions from SNP 145818 to 146418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,582 DEBUG Processing 517/1016 atomic regions from SNP 154904 to 155504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,620 DEBUG Processing 620/850 atomic regions from SNP 185809 to 186409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,629 DEBUG Processing 407/642 atomic regions from SNP 121966 to 122566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,636 DEBUG Processing 602/883 atomic regions from SNP 180573 to 181173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,698 DEBUG Processing 85/229 atomic regions from SNP 25328 to 25929 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:52,840 DEBUG Processing 488/1127 atomic regions from SNP 146118 to 146718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:52,853 DEBUG Processing 518/1016 atomic regions from SNP 155204 to 155804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:52,905 DEBUG Processing 621/850 atomic regions from SNP 186109 to 186709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:52,909 DEBUG Processing 603/883 atomic regions from SNP 180873 to 181473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:52,917 DEBUG Processing 408/642 atomic regions from SNP 122266 to 122866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:52,945 DEBUG Processing 86/229 atomic regions from SNP 25629 to 26230 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,120 DEBUG Processing 519/1016 atomic regions from SNP 155504 to 156104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,132 DEBUG Processing 489/1127 atomic regions from SNP 146418 to 147018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,180 DEBUG Processing 604/883 atomic regions from SNP 181173 to 181773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,194 DEBUG Processing 622/850 atomic regions from SNP 186409 to 187009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,199 DEBUG Processing 87/229 atomic regions from SNP 25930 to 26531 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,202 DEBUG Processing 409/642 atomic regions from SNP 122566 to 123166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,395 DEBUG Processing 520/1016 atomic regions from SNP 155804 to 156404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,416 DEBUG Processing 490/1127 atomic regions from SNP 146718 to 147318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,448 DEBUG Processing 605/883 atomic regions from SNP 181473 to 182073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,454 DEBUG Processing 88/229 atomic regions from SNP 26231 to 26832 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,483 DEBUG Processing 623/850 atomic regions from SNP 186709 to 187309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,497 DEBUG Processing 410/642 atomic regions from SNP 122866 to 123466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,677 DEBUG Processing 521/1016 atomic regions from SNP 156104 to 156704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,694 DEBUG Processing 491/1127 atomic regions from SNP 147018 to 147618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:53,712 DEBUG Processing 89/229 atomic regions from SNP 26532 to 27133 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,714 DEBUG Processing 606/883 atomic regions from SNP 181773 to 182373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,766 DEBUG Processing 411/642 atomic regions from SNP 123166 to 123766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:53,773 DEBUG Processing 624/850 atomic regions from SNP 187009 to 187609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:53,971 DEBUG Processing 522/1016 atomic regions from SNP 156404 to 157004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:53,973 DEBUG Processing 607/883 atomic regions from SNP 182073 to 182673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:53,983 DEBUG Processing 90/229 atomic regions from SNP 26833 to 27434 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:53,995 DEBUG Processing 492/1127 atomic regions from SNP 147318 to 147918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,040 DEBUG Processing 412/642 atomic regions from SNP 123466 to 124066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,052 DEBUG Processing 625/850 atomic regions from SNP 187309 to 187909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,229 DEBUG Processing 91/229 atomic regions from SNP 27134 to 27735 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,234 DEBUG Processing 608/883 atomic regions from SNP 182373 to 182973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,252 DEBUG Processing 523/1016 atomic regions from SNP 156704 to 157304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,292 DEBUG Processing 493/1127 atomic regions from SNP 147618 to 148218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,327 DEBUG Processing 413/642 atomic regions from SNP 123766 to 124366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,338 DEBUG Processing 626/850 atomic regions from SNP 187609 to 188209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,470 DEBUG Processing 92/229 atomic regions from SNP 27435 to 28036 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,489 DEBUG Processing 609/883 atomic regions from SNP 182673 to 183273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,542 DEBUG Processing 524/1016 atomic regions from SNP 157004 to 157604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,581 DEBUG Processing 494/1127 atomic regions from SNP 147918 to 148518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,609 DEBUG Processing 414/642 atomic regions from SNP 124066 to 124666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,624 DEBUG Processing 627/850 atomic regions from SNP 187909 to 188509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,716 DEBUG Processing 93/229 atomic regions from SNP 27736 to 28337 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:54,747 DEBUG Processing 610/883 atomic regions from SNP 182973 to 183573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:54,828 DEBUG Processing 525/1016 atomic regions from SNP 157304 to 157904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:54,866 DEBUG Processing 495/1127 atomic regions from SNP 148218 to 148818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:54,880 DEBUG Processing 415/642 atomic regions from SNP 124366 to 124966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:54,903 DEBUG Processing 628/850 atomic regions from SNP 188209 to 188809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:54,962 DEBUG Processing 94/229 atomic regions from SNP 28037 to 28638 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,004 DEBUG Processing 611/883 atomic regions from SNP 183273 to 183873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,080 DEBUG Processing 526/1016 atomic regions from SNP 157604 to 158204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,161 DEBUG Processing 416/642 atomic regions from SNP 124666 to 125266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,162 DEBUG Processing 496/1127 atomic regions from SNP 148518 to 149118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,185 DEBUG Processing 629/850 atomic regions from SNP 188509 to 189109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,206 DEBUG Processing 95/229 atomic regions from SNP 28338 to 28939 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,263 DEBUG Processing 612/883 atomic regions from SNP 183573 to 184173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,333 DEBUG Processing 527/1016 atomic regions from SNP 157904 to 158504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,452 DEBUG Processing 417/642 atomic regions from SNP 124966 to 125566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,453 DEBUG Processing 96/229 atomic regions from SNP 28639 to 29240 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,461 DEBUG Processing 630/850 atomic regions from SNP 188809 to 189409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,461 DEBUG Processing 497/1127 atomic regions from SNP 148818 to 149418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,522 DEBUG Processing 613/883 atomic regions from SNP 183873 to 184473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,588 DEBUG Processing 528/1016 atomic regions from SNP 158204 to 158804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,697 DEBUG Processing 97/229 atomic regions from SNP 28940 to 29541 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,716 DEBUG Processing 631/850 atomic regions from SNP 189109 to 189709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:55,731 DEBUG Processing 418/642 atomic regions from SNP 125266 to 125866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:55,754 DEBUG Processing 498/1127 atomic regions from SNP 149118 to 149718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:55,781 DEBUG Processing 614/883 atomic regions from SNP 184173 to 184773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:55,853 DEBUG Processing 529/1016 atomic regions from SNP 158504 to 159104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:55,941 DEBUG Processing 98/229 atomic regions from SNP 29241 to 29842 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:55,986 DEBUG Processing 632/850 atomic regions from SNP 189409 to 190009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,005 DEBUG Processing 419/642 atomic regions from SNP 125566 to 126166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,042 DEBUG Processing 499/1127 atomic regions from SNP 149418 to 150018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,044 DEBUG Processing 615/883 atomic regions from SNP 184473 to 185073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,118 DEBUG Processing 530/1016 atomic regions from SNP 158804 to 159404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,172 DEBUG Processing 99/229 atomic regions from SNP 29542 to 30143 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,233 DEBUG Processing 633/850 atomic regions from SNP 189709 to 190309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,283 DEBUG Processing 420/642 atomic regions from SNP 125866 to 126466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,307 DEBUG Processing 616/883 atomic regions from SNP 184773 to 185373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,326 DEBUG Processing 500/1127 atomic regions from SNP 149718 to 150318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,389 DEBUG Processing 531/1016 atomic regions from SNP 159104 to 159704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,400 DEBUG Processing 100/229 atomic regions from SNP 29843 to 30444 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,468 DEBUG Processing 634/850 atomic regions from SNP 190009 to 190609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,572 DEBUG Processing 421/642 atomic regions from SNP 126166 to 126766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,574 DEBUG Processing 617/883 atomic regions from SNP 185073 to 185673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,614 DEBUG Processing 501/1127 atomic regions from SNP 150018 to 150618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,641 DEBUG Processing 101/229 atomic regions from SNP 30144 to 30745 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,666 DEBUG Processing 532/1016 atomic regions from SNP 159404 to 160004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,701 DEBUG Processing 635/850 atomic regions from SNP 190309 to 190909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:56,840 DEBUG Processing 618/883 atomic regions from SNP 185373 to 185973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:56,846 DEBUG Processing 422/642 atomic regions from SNP 126466 to 127066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:56,897 DEBUG Processing 102/229 atomic regions from SNP 30445 to 31046 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:56,910 DEBUG Processing 502/1127 atomic regions from SNP 150318 to 150918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:56,944 DEBUG Processing 533/1016 atomic regions from SNP 159704 to 160304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:56,946 DEBUG Processing 636/850 atomic regions from SNP 190609 to 191209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,095 DEBUG Processing 619/883 atomic regions from SNP 185673 to 186273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,118 DEBUG Processing 423/642 atomic regions from SNP 126766 to 127366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,152 DEBUG Processing 103/229 atomic regions from SNP 30746 to 31347 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,197 DEBUG Processing 637/850 atomic regions from SNP 190909 to 191509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,199 DEBUG Processing 503/1127 atomic regions from SNP 150618 to 151218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,220 DEBUG Processing 534/1016 atomic regions from SNP 160004 to 160604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,347 DEBUG Processing 620/883 atomic regions from SNP 185973 to 186573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,388 DEBUG Processing 424/642 atomic regions from SNP 127066 to 127666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,401 DEBUG Processing 104/229 atomic regions from SNP 31047 to 31648 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,452 DEBUG Processing 638/850 atomic regions from SNP 191209 to 191809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,484 DEBUG Processing 504/1127 atomic regions from SNP 150918 to 151518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,493 DEBUG Processing 535/1016 atomic regions from SNP 160304 to 160904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,595 DEBUG Processing 621/883 atomic regions from SNP 186273 to 186873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,641 DEBUG Processing 105/229 atomic regions from SNP 31348 to 31949 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,651 DEBUG Processing 425/642 atomic regions from SNP 127366 to 127966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:57,728 DEBUG Processing 639/850 atomic regions from SNP 191509 to 192109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:57,766 DEBUG Processing 505/1127 atomic regions from SNP 151218 to 151818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:57,772 DEBUG Processing 536/1016 atomic regions from SNP 160604 to 161204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:57,850 DEBUG Processing 622/883 atomic regions from SNP 186573 to 187173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:57,876 DEBUG Processing 106/229 atomic regions from SNP 31649 to 32250 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:57,900 DEBUG Processing 426/642 atomic regions from SNP 127666 to 128266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,004 DEBUG Processing 640/850 atomic regions from SNP 191809 to 192409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,049 DEBUG Processing 537/1016 atomic regions from SNP 160904 to 161504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,050 DEBUG Processing 506/1127 atomic regions from SNP 151518 to 152118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,105 DEBUG Processing 623/883 atomic regions from SNP 186873 to 187473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,117 DEBUG Processing 107/229 atomic regions from SNP 31950 to 32551 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,153 DEBUG Processing 427/642 atomic regions from SNP 127966 to 128566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,267 DEBUG Processing 641/850 atomic regions from SNP 192109 to 192709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,329 DEBUG Processing 538/1016 atomic regions from SNP 161204 to 161804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,347 DEBUG Processing 507/1127 atomic regions from SNP 151818 to 152418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,365 DEBUG Processing 108/229 atomic regions from SNP 32251 to 32852 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,368 DEBUG Processing 624/883 atomic regions from SNP 187173 to 187773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,442 DEBUG Processing 428/642 atomic regions from SNP 128266 to 128866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,508 DEBUG Processing 642/850 atomic regions from SNP 192409 to 193009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,613 DEBUG Processing 539/1016 atomic regions from SNP 161504 to 162104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,619 DEBUG Processing 109/229 atomic regions from SNP 32552 to 33153 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,635 DEBUG Processing 625/883 atomic regions from SNP 187473 to 188073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,669 DEBUG Processing 508/1127 atomic regions from SNP 152118 to 152718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,729 DEBUG Processing 429/642 atomic regions from SNP 128566 to 129166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:58,746 DEBUG Processing 643/850 atomic regions from SNP 192709 to 193309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,870 DEBUG Processing 110/229 atomic regions from SNP 32853 to 33454 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:58,894 DEBUG Processing 540/1016 atomic regions from SNP 161804 to 162404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:58,903 DEBUG Processing 626/883 atomic regions from SNP 187773 to 188373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:58,983 DEBUG Processing 509/1127 atomic regions from SNP 152418 to 153018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:58,990 DEBUG Processing 644/850 atomic regions from SNP 193009 to 193609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:58,994 DEBUG Processing 430/642 atomic regions from SNP 128866 to 129466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,114 DEBUG Processing 111/229 atomic regions from SNP 33154 to 33755 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,164 DEBUG Processing 627/883 atomic regions from SNP 188073 to 188673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,171 DEBUG Processing 541/1016 atomic regions from SNP 162104 to 162704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,244 DEBUG Processing 431/642 atomic regions from SNP 129166 to 129766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,245 DEBUG Processing 645/850 atomic regions from SNP 193309 to 193909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,275 DEBUG Processing 510/1127 atomic regions from SNP 152718 to 153318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,348 DEBUG Processing 112/229 atomic regions from SNP 33455 to 34056 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,419 DEBUG Processing 628/883 atomic regions from SNP 188373 to 188973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,449 DEBUG Processing 542/1016 atomic regions from SNP 162404 to 163004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,492 DEBUG Processing 432/642 atomic regions from SNP 129466 to 130066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,505 DEBUG Processing 646/850 atomic regions from SNP 193609 to 194209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,559 DEBUG Processing 511/1127 atomic regions from SNP 153018 to 153618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,584 DEBUG Processing 113/229 atomic regions from SNP 33756 to 34357 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,670 DEBUG Processing 629/883 atomic regions from SNP 188673 to 189273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,723 DEBUG Processing 543/1016 atomic regions from SNP 162704 to 163304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,741 DEBUG Processing 433/642 atomic regions from SNP 129766 to 130366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:45:59,771 DEBUG Processing 647/850 atomic regions from SNP 193909 to 194509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:45:59,822 DEBUG Processing 114/229 atomic regions from SNP 34057 to 34658 for chrX (subchromosome 6 of 6). 2025-01-31 09:45:59,831 DEBUG Processing 512/1127 atomic regions from SNP 153318 to 153918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:45:59,941 DEBUG Processing 630/883 atomic regions from SNP 188973 to 189573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:45:59,995 DEBUG Processing 544/1016 atomic regions from SNP 163004 to 163604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:45:59,999 DEBUG Processing 434/642 atomic regions from SNP 130066 to 130666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,057 DEBUG Processing 648/850 atomic regions from SNP 194209 to 194809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,076 DEBUG Processing 115/229 atomic regions from SNP 34358 to 34959 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,114 DEBUG Processing 513/1127 atomic regions from SNP 153618 to 154218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,208 DEBUG Processing 631/883 atomic regions from SNP 189273 to 189873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,253 DEBUG Processing 435/642 atomic regions from SNP 130366 to 130966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,266 DEBUG Processing 545/1016 atomic regions from SNP 163304 to 163904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,317 DEBUG Processing 649/850 atomic regions from SNP 194509 to 195109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,321 DEBUG Processing 116/229 atomic regions from SNP 34659 to 35260 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,418 DEBUG Processing 514/1127 atomic regions from SNP 153918 to 154518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,463 DEBUG Processing 632/883 atomic regions from SNP 189573 to 190173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,517 DEBUG Processing 436/642 atomic regions from SNP 130666 to 131266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,543 DEBUG Processing 546/1016 atomic regions from SNP 163604 to 164204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:00,564 DEBUG Processing 117/229 atomic regions from SNP 34960 to 35561 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,566 DEBUG Processing 650/850 atomic regions from SNP 194809 to 195409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,723 DEBUG Processing 633/883 atomic regions from SNP 189873 to 190473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:00,737 DEBUG Processing 515/1127 atomic regions from SNP 154218 to 154818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:00,774 DEBUG Processing 437/642 atomic regions from SNP 130966 to 131566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:00,810 DEBUG Processing 118/229 atomic regions from SNP 35261 to 35862 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:00,816 DEBUG Processing 651/850 atomic regions from SNP 195109 to 195709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:00,822 DEBUG Processing 547/1016 atomic regions from SNP 163904 to 164504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,008 DEBUG Processing 634/883 atomic regions from SNP 190173 to 190773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,054 DEBUG Processing 119/229 atomic regions from SNP 35562 to 36163 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,055 DEBUG Processing 516/1127 atomic regions from SNP 154518 to 155118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,063 DEBUG Processing 438/642 atomic regions from SNP 131266 to 131866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,069 DEBUG Processing 652/850 atomic regions from SNP 195409 to 196009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,103 DEBUG Processing 548/1016 atomic regions from SNP 164204 to 164804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,297 DEBUG Processing 635/883 atomic regions from SNP 190473 to 191073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,302 DEBUG Processing 120/229 atomic regions from SNP 35863 to 36464 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,324 DEBUG Processing 653/850 atomic regions from SNP 195709 to 196309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,359 DEBUG Processing 439/642 atomic regions from SNP 131566 to 132166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,369 DEBUG Processing 517/1127 atomic regions from SNP 154818 to 155418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,392 DEBUG Processing 549/1016 atomic regions from SNP 164504 to 165104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,553 DEBUG Processing 121/229 atomic regions from SNP 36164 to 36765 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,574 DEBUG Processing 654/850 atomic regions from SNP 196009 to 196609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,581 DEBUG Processing 636/883 atomic regions from SNP 190773 to 191373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,646 DEBUG Processing 440/642 atomic regions from SNP 131866 to 132466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,677 DEBUG Processing 518/1127 atomic regions from SNP 155118 to 155718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:01,679 DEBUG Processing 550/1016 atomic regions from SNP 164804 to 165404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,779 DEBUG Processing 122/229 atomic regions from SNP 36465 to 37066 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:01,812 DEBUG Processing 655/850 atomic regions from SNP 196309 to 196909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:01,855 DEBUG Processing 637/883 atomic regions from SNP 191073 to 191673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:01,917 DEBUG Processing 441/642 atomic regions from SNP 132166 to 132766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:01,965 DEBUG Processing 551/1016 atomic regions from SNP 165104 to 165704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:01,982 DEBUG Processing 519/1127 atomic regions from SNP 155418 to 156018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,011 DEBUG Processing 123/229 atomic regions from SNP 36766 to 37367 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,051 DEBUG Processing 656/850 atomic regions from SNP 196609 to 197209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,107 DEBUG Processing 638/883 atomic regions from SNP 191373 to 191973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,174 DEBUG Processing 442/642 atomic regions from SNP 132466 to 133066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,247 DEBUG Processing 552/1016 atomic regions from SNP 165404 to 166004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,263 DEBUG Processing 124/229 atomic regions from SNP 37067 to 37668 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,284 DEBUG Processing 520/1127 atomic regions from SNP 155718 to 156318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,297 DEBUG Processing 657/850 atomic regions from SNP 196909 to 197509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,355 DEBUG Processing 639/883 atomic regions from SNP 191673 to 192273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,427 DEBUG Processing 443/642 atomic regions from SNP 132766 to 133366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,513 DEBUG Processing 125/229 atomic regions from SNP 37368 to 37969 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,535 DEBUG Processing 553/1016 atomic regions from SNP 165704 to 166304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,580 DEBUG Processing 658/850 atomic regions from SNP 197209 to 197809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,587 DEBUG Processing 521/1127 atomic regions from SNP 156018 to 156618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,615 DEBUG Processing 640/883 atomic regions from SNP 191973 to 192573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,675 DEBUG Processing 444/642 atomic regions from SNP 133066 to 133666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,752 DEBUG Processing 126/229 atomic regions from SNP 37669 to 38270 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:02,811 DEBUG Processing 554/1016 atomic regions from SNP 166004 to 166604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:02,855 DEBUG Processing 659/850 atomic regions from SNP 197509 to 198109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:02,873 DEBUG Processing 641/883 atomic regions from SNP 192273 to 192873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:02,880 DEBUG Processing 522/1127 atomic regions from SNP 156318 to 156918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:02,926 DEBUG Processing 445/642 atomic regions from SNP 133366 to 133966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:02,984 DEBUG Processing 127/229 atomic regions from SNP 37970 to 38571 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,090 DEBUG Processing 555/1016 atomic regions from SNP 166304 to 166904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,135 DEBUG Processing 660/850 atomic regions from SNP 197809 to 198409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,137 DEBUG Processing 642/883 atomic regions from SNP 192573 to 193173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,183 DEBUG Processing 446/642 atomic regions from SNP 133666 to 134266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,188 DEBUG Processing 523/1127 atomic regions from SNP 156618 to 157218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,219 DEBUG Processing 128/229 atomic regions from SNP 38271 to 38872 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,370 DEBUG Processing 556/1016 atomic regions from SNP 166604 to 167204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,405 DEBUG Processing 643/883 atomic regions from SNP 192873 to 193473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,422 DEBUG Processing 661/850 atomic regions from SNP 198109 to 198709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,466 DEBUG Processing 129/229 atomic regions from SNP 38572 to 39173 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,469 DEBUG Processing 447/642 atomic regions from SNP 133966 to 134566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,494 DEBUG Processing 524/1127 atomic regions from SNP 156918 to 157518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,652 DEBUG Processing 557/1016 atomic regions from SNP 166904 to 167504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,670 DEBUG Processing 644/883 atomic regions from SNP 193173 to 193773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,716 DEBUG Processing 662/850 atomic regions from SNP 198409 to 199009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,726 DEBUG Processing 130/229 atomic regions from SNP 38873 to 39474 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:03,740 DEBUG Processing 448/642 atomic regions from SNP 134266 to 134866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:03,800 DEBUG Processing 525/1127 atomic regions from SNP 157218 to 157818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:03,927 DEBUG Processing 645/883 atomic regions from SNP 193473 to 194073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:03,930 DEBUG Processing 558/1016 atomic regions from SNP 167204 to 167804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:03,988 DEBUG Processing 663/850 atomic regions from SNP 198709 to 199309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:03,990 DEBUG Processing 131/229 atomic regions from SNP 39174 to 39775 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,014 DEBUG Processing 449/642 atomic regions from SNP 134566 to 135166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,100 DEBUG Processing 526/1127 atomic regions from SNP 157518 to 158118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,187 DEBUG Processing 646/883 atomic regions from SNP 193773 to 194373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,211 DEBUG Processing 559/1016 atomic regions from SNP 167504 to 168104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,243 DEBUG Processing 132/229 atomic regions from SNP 39475 to 40076 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,251 DEBUG Processing 664/850 atomic regions from SNP 199009 to 199609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,280 DEBUG Processing 450/642 atomic regions from SNP 134866 to 135466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,407 DEBUG Processing 527/1127 atomic regions from SNP 157818 to 158418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,445 DEBUG Processing 647/883 atomic regions from SNP 194073 to 194673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,496 DEBUG Processing 560/1016 atomic regions from SNP 167804 to 168404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,500 DEBUG Processing 133/229 atomic regions from SNP 39776 to 40377 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,540 DEBUG Processing 665/850 atomic regions from SNP 199309 to 199909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,547 DEBUG Processing 451/642 atomic regions from SNP 135166 to 135766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,702 DEBUG Processing 648/883 atomic regions from SNP 194373 to 194973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:04,723 DEBUG Processing 528/1127 atomic regions from SNP 158118 to 158718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:04,763 DEBUG Processing 134/229 atomic regions from SNP 40077 to 40678 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:04,807 DEBUG Processing 561/1016 atomic regions from SNP 168104 to 168704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:04,824 DEBUG Processing 452/642 atomic regions from SNP 135466 to 136066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:04,829 DEBUG Processing 666/850 atomic regions from SNP 199609 to 200209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:04,950 DEBUG Processing 649/883 atomic regions from SNP 194673 to 195273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,010 DEBUG Processing 135/229 atomic regions from SNP 40378 to 40979 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,084 DEBUG Processing 529/1127 atomic regions from SNP 158418 to 159018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,102 DEBUG Processing 453/642 atomic regions from SNP 135766 to 136366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,112 DEBUG Processing 667/850 atomic regions from SNP 199909 to 200509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,125 DEBUG Processing 562/1016 atomic regions from SNP 168404 to 169004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,197 DEBUG Processing 650/883 atomic regions from SNP 194973 to 195573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,249 DEBUG Processing 136/229 atomic regions from SNP 40679 to 41280 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,361 DEBUG Processing 454/642 atomic regions from SNP 136066 to 136666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,394 DEBUG Processing 668/850 atomic regions from SNP 200209 to 200809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,407 DEBUG Processing 530/1127 atomic regions from SNP 158718 to 159318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,407 DEBUG Processing 563/1016 atomic regions from SNP 168704 to 169304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,447 DEBUG Processing 651/883 atomic regions from SNP 195273 to 195873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,484 DEBUG Processing 137/229 atomic regions from SNP 40980 to 41581 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,613 DEBUG Processing 455/642 atomic regions from SNP 136366 to 136966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,672 DEBUG Processing 669/850 atomic regions from SNP 200509 to 201109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,689 DEBUG Processing 564/1016 atomic regions from SNP 169004 to 169604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:05,701 DEBUG Processing 652/883 atomic regions from SNP 195573 to 196173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,722 DEBUG Processing 531/1127 atomic regions from SNP 159018 to 159618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:05,723 DEBUG Processing 138/229 atomic regions from SNP 41281 to 41882 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,859 DEBUG Processing 456/642 atomic regions from SNP 136666 to 137266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:05,943 DEBUG Processing 670/850 atomic regions from SNP 200809 to 201409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:05,961 DEBUG Processing 653/883 atomic regions from SNP 195873 to 196473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:05,968 DEBUG Processing 139/229 atomic regions from SNP 41582 to 42183 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:05,970 DEBUG Processing 565/1016 atomic regions from SNP 169304 to 169904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,013 DEBUG Processing 532/1127 atomic regions from SNP 159318 to 159918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,108 DEBUG Processing 457/642 atomic regions from SNP 136966 to 137566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,211 DEBUG Processing 140/229 atomic regions from SNP 41883 to 42484 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,219 DEBUG Processing 654/883 atomic regions from SNP 196173 to 196773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,223 DEBUG Processing 671/850 atomic regions from SNP 201109 to 201709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,246 DEBUG Processing 566/1016 atomic regions from SNP 169604 to 170204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,299 DEBUG Processing 533/1127 atomic regions from SNP 159618 to 160218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,385 DEBUG Processing 458/642 atomic regions from SNP 137266 to 137866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,453 DEBUG Processing 141/229 atomic regions from SNP 42184 to 42785 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,473 DEBUG Processing 655/883 atomic regions from SNP 196473 to 197073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,502 DEBUG Processing 672/850 atomic regions from SNP 201409 to 202009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,513 DEBUG Processing 567/1016 atomic regions from SNP 169904 to 170504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,585 DEBUG Processing 534/1127 atomic regions from SNP 159918 to 160518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,666 DEBUG Processing 459/642 atomic regions from SNP 137566 to 138166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,699 DEBUG Processing 142/229 atomic regions from SNP 42485 to 43086 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,730 DEBUG Processing 656/883 atomic regions from SNP 196773 to 197373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:06,780 DEBUG Processing 568/1016 atomic regions from SNP 170204 to 170804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:06,781 DEBUG Processing 673/850 atomic regions from SNP 201709 to 202309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:06,871 DEBUG Processing 535/1127 atomic regions from SNP 160218 to 160818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:06,944 DEBUG Processing 143/229 atomic regions from SNP 42786 to 43387 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:06,948 DEBUG Processing 460/642 atomic regions from SNP 137866 to 138466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:06,989 DEBUG Processing 657/883 atomic regions from SNP 197073 to 197673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,044 DEBUG Processing 569/1016 atomic regions from SNP 170504 to 171104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,056 DEBUG Processing 674/850 atomic regions from SNP 202009 to 202609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,154 DEBUG Processing 536/1127 atomic regions from SNP 160518 to 161118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,189 DEBUG Processing 144/229 atomic regions from SNP 43087 to 43688 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,230 DEBUG Processing 461/642 atomic regions from SNP 138166 to 138766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,251 DEBUG Processing 658/883 atomic regions from SNP 197373 to 197973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,316 DEBUG Processing 570/1016 atomic regions from SNP 170804 to 171404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,325 DEBUG Processing 675/850 atomic regions from SNP 202309 to 202909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,423 DEBUG Processing 145/229 atomic regions from SNP 43388 to 43989 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,435 DEBUG Processing 537/1127 atomic regions from SNP 160818 to 161418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,492 DEBUG Processing 462/642 atomic regions from SNP 138466 to 139066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,512 DEBUG Processing 659/883 atomic regions from SNP 197673 to 198273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,593 DEBUG Processing 571/1016 atomic regions from SNP 171104 to 171704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,597 DEBUG Processing 676/850 atomic regions from SNP 202609 to 203209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,653 DEBUG Processing 146/229 atomic regions from SNP 43689 to 44290 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,710 DEBUG Processing 538/1127 atomic regions from SNP 161118 to 161718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:07,759 DEBUG Processing 463/642 atomic regions from SNP 138766 to 139366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:07,767 DEBUG Processing 660/883 atomic regions from SNP 197973 to 198573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:07,871 DEBUG Processing 572/1016 atomic regions from SNP 171404 to 172004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:07,877 DEBUG Processing 677/850 atomic regions from SNP 202909 to 203509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:07,891 DEBUG Processing 147/229 atomic regions from SNP 43990 to 44591 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:07,986 DEBUG Processing 539/1127 atomic regions from SNP 161418 to 162018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,010 DEBUG Processing 464/642 atomic regions from SNP 139066 to 139666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,018 DEBUG Processing 661/883 atomic regions from SNP 198273 to 198873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,135 DEBUG Processing 148/229 atomic regions from SNP 44291 to 44892 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,149 DEBUG Processing 573/1016 atomic regions from SNP 171704 to 172304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,156 DEBUG Processing 678/850 atomic regions from SNP 203209 to 203809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,259 DEBUG Processing 465/642 atomic regions from SNP 139366 to 139966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,264 DEBUG Processing 540/1127 atomic regions from SNP 161718 to 162318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,268 DEBUG Processing 662/883 atomic regions from SNP 198573 to 199173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,378 DEBUG Processing 149/229 atomic regions from SNP 44592 to 45193 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,423 DEBUG Processing 574/1016 atomic regions from SNP 172004 to 172604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,428 DEBUG Processing 679/850 atomic regions from SNP 203509 to 204109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,505 DEBUG Processing 466/642 atomic regions from SNP 139666 to 140266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,547 DEBUG Processing 663/883 atomic regions from SNP 198873 to 199473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,551 DEBUG Processing 541/1127 atomic regions from SNP 162018 to 162618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,618 DEBUG Processing 150/229 atomic regions from SNP 44893 to 45494 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,682 DEBUG Processing 680/850 atomic regions from SNP 203809 to 204409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,692 DEBUG Processing 575/1016 atomic regions from SNP 172304 to 172904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:08,780 DEBUG Processing 467/642 atomic regions from SNP 139966 to 140566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:08,807 DEBUG Processing 664/883 atomic regions from SNP 199173 to 199773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:08,838 DEBUG Processing 542/1127 atomic regions from SNP 162318 to 162918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:08,860 DEBUG Processing 151/229 atomic regions from SNP 45194 to 45795 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:08,935 DEBUG Processing 681/850 atomic regions from SNP 204109 to 204709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:08,961 DEBUG Processing 576/1016 atomic regions from SNP 172604 to 173204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,059 DEBUG Processing 468/642 atomic regions from SNP 140266 to 140866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,060 DEBUG Processing 665/883 atomic regions from SNP 199473 to 200073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,103 DEBUG Processing 152/229 atomic regions from SNP 45495 to 46096 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,122 DEBUG Processing 543/1127 atomic regions from SNP 162618 to 163218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,208 DEBUG Processing 682/850 atomic regions from SNP 204409 to 205009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,233 DEBUG Processing 577/1016 atomic regions from SNP 172904 to 173504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,323 DEBUG Processing 469/642 atomic regions from SNP 140566 to 141166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,329 DEBUG Processing 666/883 atomic regions from SNP 199773 to 200373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,343 DEBUG Processing 153/229 atomic regions from SNP 45796 to 46397 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,402 DEBUG Processing 544/1127 atomic regions from SNP 162918 to 163518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,488 DEBUG Processing 683/850 atomic regions from SNP 204709 to 205309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,508 DEBUG Processing 578/1016 atomic regions from SNP 173204 to 173804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,578 DEBUG Processing 470/642 atomic regions from SNP 140866 to 141466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,585 DEBUG Processing 154/229 atomic regions from SNP 46097 to 46698 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,599 DEBUG Processing 667/883 atomic regions from SNP 200073 to 200673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,678 DEBUG Processing 545/1127 atomic regions from SNP 163218 to 163818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:09,770 DEBUG Processing 684/850 atomic regions from SNP 205009 to 205609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:09,787 DEBUG Processing 579/1016 atomic regions from SNP 173504 to 174104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:09,832 DEBUG Processing 155/229 atomic regions from SNP 46398 to 46999 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:09,838 DEBUG Processing 471/642 atomic regions from SNP 141166 to 141766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:09,874 DEBUG Processing 668/883 atomic regions from SNP 200373 to 200973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:09,952 DEBUG Processing 546/1127 atomic regions from SNP 163518 to 164118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,056 DEBUG Processing 685/850 atomic regions from SNP 205309 to 205909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,067 DEBUG Processing 580/1016 atomic regions from SNP 173804 to 174404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,081 DEBUG Processing 156/229 atomic regions from SNP 46699 to 47300 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,103 DEBUG Processing 472/642 atomic regions from SNP 141466 to 142066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,181 DEBUG Processing 669/883 atomic regions from SNP 200673 to 201273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,229 DEBUG Processing 547/1127 atomic regions from SNP 163818 to 164418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,318 DEBUG Processing 157/229 atomic regions from SNP 47000 to 47601 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,340 DEBUG Processing 686/850 atomic regions from SNP 205609 to 206209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,345 DEBUG Processing 581/1016 atomic regions from SNP 174104 to 174704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,372 DEBUG Processing 473/642 atomic regions from SNP 141766 to 142366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,465 DEBUG Processing 670/883 atomic regions from SNP 200973 to 201573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,504 DEBUG Processing 548/1127 atomic regions from SNP 164118 to 164718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,557 DEBUG Processing 158/229 atomic regions from SNP 47301 to 47902 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,610 DEBUG Processing 687/850 atomic regions from SNP 205909 to 206509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,624 DEBUG Processing 582/1016 atomic regions from SNP 174404 to 175004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,624 DEBUG Processing 474/642 atomic regions from SNP 142066 to 142666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,730 DEBUG Processing 671/883 atomic regions from SNP 201273 to 201873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:10,782 DEBUG Processing 549/1127 atomic regions from SNP 164418 to 165018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:10,792 DEBUG Processing 159/229 atomic regions from SNP 47602 to 48203 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:10,872 DEBUG Processing 475/642 atomic regions from SNP 142366 to 142966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:10,874 DEBUG Processing 688/850 atomic regions from SNP 206209 to 206809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:10,897 DEBUG Processing 583/1016 atomic regions from SNP 174704 to 175304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:10,984 DEBUG Processing 672/883 atomic regions from SNP 201573 to 202173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,031 DEBUG Processing 160/229 atomic regions from SNP 47903 to 48504 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,064 DEBUG Processing 550/1127 atomic regions from SNP 164718 to 165318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,123 DEBUG Processing 476/642 atomic regions from SNP 142666 to 143266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,138 DEBUG Processing 689/850 atomic regions from SNP 206509 to 207109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,168 DEBUG Processing 584/1016 atomic regions from SNP 175004 to 175604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,244 DEBUG Processing 673/883 atomic regions from SNP 201873 to 202473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,272 DEBUG Processing 161/229 atomic regions from SNP 48204 to 48805 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,369 DEBUG Processing 551/1127 atomic regions from SNP 165018 to 165618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,387 DEBUG Processing 477/642 atomic regions from SNP 142966 to 143566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,418 DEBUG Processing 690/850 atomic regions from SNP 206809 to 207409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,461 DEBUG Processing 585/1016 atomic regions from SNP 175304 to 175904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,522 DEBUG Processing 162/229 atomic regions from SNP 48505 to 49106 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,533 DEBUG Processing 674/883 atomic regions from SNP 202173 to 202773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,639 DEBUG Processing 478/642 atomic regions from SNP 143266 to 143866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,696 DEBUG Processing 552/1127 atomic regions from SNP 165318 to 165918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:11,700 DEBUG Processing 691/850 atomic regions from SNP 207109 to 207709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:11,753 DEBUG Processing 586/1016 atomic regions from SNP 175604 to 176204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:11,768 DEBUG Processing 163/229 atomic regions from SNP 48806 to 49407 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:11,798 DEBUG Processing 675/883 atomic regions from SNP 202473 to 203073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:11,889 DEBUG Processing 479/642 atomic regions from SNP 143566 to 144166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:11,972 DEBUG Processing 692/850 atomic regions from SNP 207409 to 208009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,000 DEBUG Processing 553/1127 atomic regions from SNP 165618 to 166218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,007 DEBUG Processing 164/229 atomic regions from SNP 49107 to 49708 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,048 DEBUG Processing 587/1016 atomic regions from SNP 175904 to 176504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,067 DEBUG Processing 676/883 atomic regions from SNP 202773 to 203373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,142 DEBUG Processing 480/642 atomic regions from SNP 143866 to 144466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,219 DEBUG Processing 693/850 atomic regions from SNP 207709 to 208309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,245 DEBUG Processing 165/229 atomic regions from SNP 49408 to 50009 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,274 DEBUG Processing 554/1127 atomic regions from SNP 165918 to 166518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,329 DEBUG Processing 677/883 atomic regions from SNP 203073 to 203673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,334 DEBUG Processing 588/1016 atomic regions from SNP 176204 to 176804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,394 DEBUG Processing 481/642 atomic regions from SNP 144166 to 144766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,468 DEBUG Processing 694/850 atomic regions from SNP 208009 to 208609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,486 DEBUG Processing 166/229 atomic regions from SNP 49709 to 50310 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,549 DEBUG Processing 555/1127 atomic regions from SNP 166218 to 166818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,577 DEBUG Processing 678/883 atomic regions from SNP 203373 to 203973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,613 DEBUG Processing 589/1016 atomic regions from SNP 176504 to 177104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,644 DEBUG Processing 482/642 atomic regions from SNP 144466 to 145066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,720 DEBUG Processing 695/850 atomic regions from SNP 208309 to 208909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,729 DEBUG Processing 167/229 atomic regions from SNP 50010 to 50611 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:12,822 DEBUG Processing 679/883 atomic regions from SNP 203673 to 204273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:12,826 DEBUG Processing 556/1127 atomic regions from SNP 166518 to 167118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:12,879 DEBUG Processing 590/1016 atomic regions from SNP 176804 to 177404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:12,905 DEBUG Processing 483/642 atomic regions from SNP 144766 to 145366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:12,977 DEBUG Processing 696/850 atomic regions from SNP 208609 to 209209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:12,979 DEBUG Processing 168/229 atomic regions from SNP 50311 to 50912 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,073 DEBUG Processing 680/883 atomic regions from SNP 203973 to 204573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,104 DEBUG Processing 557/1127 atomic regions from SNP 166818 to 167418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,148 DEBUG Processing 591/1016 atomic regions from SNP 177104 to 177704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,174 DEBUG Processing 484/642 atomic regions from SNP 145066 to 145666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,232 DEBUG Processing 697/850 atomic regions from SNP 208909 to 209509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,239 DEBUG Processing 169/229 atomic regions from SNP 50612 to 51213 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,331 DEBUG Processing 681/883 atomic regions from SNP 204273 to 204873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,395 DEBUG Processing 558/1127 atomic regions from SNP 167118 to 167718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,426 DEBUG Processing 592/1016 atomic regions from SNP 177404 to 178004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,460 DEBUG Processing 485/642 atomic regions from SNP 145366 to 145966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,490 DEBUG Processing 698/850 atomic regions from SNP 209209 to 209809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,496 DEBUG Processing 170/229 atomic regions from SNP 50913 to 51514 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,592 DEBUG Processing 682/883 atomic regions from SNP 204573 to 205173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,678 DEBUG Processing 559/1127 atomic regions from SNP 167418 to 168018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,701 DEBUG Processing 593/1016 atomic regions from SNP 177704 to 178304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,743 DEBUG Processing 699/850 atomic regions from SNP 209509 to 210109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:13,743 DEBUG Processing 171/229 atomic regions from SNP 51214 to 51815 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,744 DEBUG Processing 486/642 atomic regions from SNP 145666 to 146266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:13,851 DEBUG Processing 683/883 atomic regions from SNP 204873 to 205473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:13,966 DEBUG Processing 560/1127 atomic regions from SNP 167718 to 168318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:13,978 DEBUG Processing 594/1016 atomic regions from SNP 178004 to 178604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:13,991 DEBUG Processing 172/229 atomic regions from SNP 51515 to 52116 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:13,999 DEBUG Processing 700/850 atomic regions from SNP 209809 to 210409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,033 DEBUG Processing 487/642 atomic regions from SNP 145966 to 146566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,102 DEBUG Processing 684/883 atomic regions from SNP 205173 to 205773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,237 DEBUG Processing 173/229 atomic regions from SNP 51816 to 52417 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,251 DEBUG Processing 701/850 atomic regions from SNP 210109 to 210709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,255 DEBUG Processing 595/1016 atomic regions from SNP 178304 to 178904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,256 DEBUG Processing 561/1127 atomic regions from SNP 168018 to 168618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,312 DEBUG Processing 488/642 atomic regions from SNP 146266 to 146866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,352 DEBUG Processing 685/883 atomic regions from SNP 205473 to 206073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,481 DEBUG Processing 174/229 atomic regions from SNP 52117 to 52718 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,504 DEBUG Processing 702/850 atomic regions from SNP 210409 to 211009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,534 DEBUG Processing 596/1016 atomic regions from SNP 178604 to 179204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,544 DEBUG Processing 562/1127 atomic regions from SNP 168318 to 168918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,606 DEBUG Processing 489/642 atomic regions from SNP 146566 to 147166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,606 DEBUG Processing 686/883 atomic regions from SNP 205773 to 206373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,725 DEBUG Processing 175/229 atomic regions from SNP 52418 to 53019 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:14,757 DEBUG Processing 703/850 atomic regions from SNP 210709 to 211309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:14,811 DEBUG Processing 597/1016 atomic regions from SNP 178904 to 179504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:14,828 DEBUG Processing 563/1127 atomic regions from SNP 168618 to 169218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:14,854 DEBUG Processing 687/883 atomic regions from SNP 206073 to 206673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:14,879 DEBUG Processing 490/642 atomic regions from SNP 146866 to 147466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:14,966 DEBUG Processing 176/229 atomic regions from SNP 52719 to 53320 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,009 DEBUG Processing 704/850 atomic regions from SNP 211009 to 211609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,082 DEBUG Processing 598/1016 atomic regions from SNP 179204 to 179804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,103 DEBUG Processing 688/883 atomic regions from SNP 206373 to 206973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,104 DEBUG Processing 564/1127 atomic regions from SNP 168918 to 169518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,136 DEBUG Processing 491/642 atomic regions from SNP 147166 to 147766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,203 DEBUG Processing 177/229 atomic regions from SNP 53020 to 53621 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,262 DEBUG Processing 705/850 atomic regions from SNP 211309 to 211909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,351 DEBUG Processing 599/1016 atomic regions from SNP 179504 to 180104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,357 DEBUG Processing 689/883 atomic regions from SNP 206673 to 207273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,380 DEBUG Processing 565/1127 atomic regions from SNP 169218 to 169818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,400 DEBUG Processing 492/642 atomic regions from SNP 147466 to 148066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,461 DEBUG Processing 178/229 atomic regions from SNP 53321 to 53922 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,512 DEBUG Processing 706/850 atomic regions from SNP 211609 to 212209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,611 DEBUG Processing 690/883 atomic regions from SNP 206973 to 207573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,617 DEBUG Processing 600/1016 atomic regions from SNP 179804 to 180404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,655 DEBUG Processing 566/1127 atomic regions from SNP 169518 to 170118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,659 DEBUG Processing 493/642 atomic regions from SNP 147766 to 148366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,741 DEBUG Processing 179/229 atomic regions from SNP 53622 to 54223 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:15,759 DEBUG Processing 707/850 atomic regions from SNP 211909 to 212509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:15,865 DEBUG Processing 691/883 atomic regions from SNP 207273 to 207873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:15,888 DEBUG Processing 601/1016 atomic regions from SNP 180104 to 180704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:15,916 DEBUG Processing 494/642 atomic regions from SNP 148066 to 148666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:15,930 DEBUG Processing 567/1127 atomic regions from SNP 169818 to 170418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:15,979 DEBUG Processing 180/229 atomic regions from SNP 53923 to 54524 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,008 DEBUG Processing 708/850 atomic regions from SNP 212209 to 212809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,120 DEBUG Processing 692/883 atomic regions from SNP 207573 to 208173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,159 DEBUG Processing 602/1016 atomic regions from SNP 180404 to 181004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,174 DEBUG Processing 495/642 atomic regions from SNP 148366 to 148966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,204 DEBUG Processing 568/1127 atomic regions from SNP 170118 to 170718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,214 DEBUG Processing 181/229 atomic regions from SNP 54224 to 54825 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,255 DEBUG Processing 709/850 atomic regions from SNP 212509 to 213109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,375 DEBUG Processing 693/883 atomic regions from SNP 207873 to 208473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,430 DEBUG Processing 496/642 atomic regions from SNP 148666 to 149266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,430 DEBUG Processing 603/1016 atomic regions from SNP 180704 to 181304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,453 DEBUG Processing 182/229 atomic regions from SNP 54525 to 55126 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,476 DEBUG Processing 569/1127 atomic regions from SNP 170418 to 171018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,502 DEBUG Processing 710/850 atomic regions from SNP 212809 to 213409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,626 DEBUG Processing 694/883 atomic regions from SNP 208173 to 208773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,679 DEBUG Processing 497/642 atomic regions from SNP 148966 to 149566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,686 DEBUG Processing 183/229 atomic regions from SNP 54826 to 55427 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,701 DEBUG Processing 604/1016 atomic regions from SNP 181004 to 181604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,747 DEBUG Processing 711/850 atomic regions from SNP 213109 to 213709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:16,767 DEBUG Processing 570/1127 atomic regions from SNP 170718 to 171318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:16,880 DEBUG Processing 695/883 atomic regions from SNP 208473 to 209073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:16,922 DEBUG Processing 184/229 atomic regions from SNP 55127 to 55728 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:16,930 DEBUG Processing 498/642 atomic regions from SNP 149266 to 149866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:16,975 DEBUG Processing 605/1016 atomic regions from SNP 181304 to 181904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:16,992 DEBUG Processing 712/850 atomic regions from SNP 213409 to 214009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,053 DEBUG Processing 571/1127 atomic regions from SNP 171018 to 171618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,135 DEBUG Processing 696/883 atomic regions from SNP 208773 to 209373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,164 DEBUG Processing 185/229 atomic regions from SNP 55428 to 56029 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,182 DEBUG Processing 499/642 atomic regions from SNP 149566 to 150166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,245 DEBUG Processing 606/1016 atomic regions from SNP 181604 to 182204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,255 DEBUG Processing 713/850 atomic regions from SNP 213709 to 214309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,337 DEBUG Processing 572/1127 atomic regions from SNP 171318 to 171918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,398 DEBUG Processing 697/883 atomic regions from SNP 209073 to 209673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,410 DEBUG Processing 186/229 atomic regions from SNP 55729 to 56330 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,440 DEBUG Processing 500/642 atomic regions from SNP 149866 to 150466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,513 DEBUG Processing 714/850 atomic regions from SNP 214009 to 214609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,520 DEBUG Processing 607/1016 atomic regions from SNP 181904 to 182504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,620 DEBUG Processing 573/1127 atomic regions from SNP 171618 to 172218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,660 DEBUG Processing 698/883 atomic regions from SNP 209373 to 209973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,660 DEBUG Processing 187/229 atomic regions from SNP 56030 to 56631 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,699 DEBUG Processing 501/642 atomic regions from SNP 150166 to 150766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:17,757 DEBUG Processing 715/850 atomic regions from SNP 214309 to 214909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:17,790 DEBUG Processing 608/1016 atomic regions from SNP 182204 to 182804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:17,903 DEBUG Processing 574/1127 atomic regions from SNP 171918 to 172518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:17,908 DEBUG Processing 188/229 atomic regions from SNP 56331 to 56932 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:17,934 DEBUG Processing 699/883 atomic regions from SNP 209673 to 210273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:17,983 DEBUG Processing 502/642 atomic regions from SNP 150466 to 151066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,004 DEBUG Processing 716/850 atomic regions from SNP 214609 to 215209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,055 DEBUG Processing 609/1016 atomic regions from SNP 182504 to 183104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,169 DEBUG Processing 189/229 atomic regions from SNP 56632 to 57233 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,181 DEBUG Processing 575/1127 atomic regions from SNP 172218 to 172818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,211 DEBUG Processing 700/883 atomic regions from SNP 209973 to 210573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,265 DEBUG Processing 717/850 atomic regions from SNP 214909 to 215509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,269 DEBUG Processing 503/642 atomic regions from SNP 150766 to 151366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,320 DEBUG Processing 610/1016 atomic regions from SNP 182804 to 183404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,402 DEBUG Processing 190/229 atomic regions from SNP 56933 to 57534 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,465 DEBUG Processing 576/1127 atomic regions from SNP 172518 to 173118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,505 DEBUG Processing 701/883 atomic regions from SNP 210273 to 210873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,558 DEBUG Processing 718/850 atomic regions from SNP 215209 to 215809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,560 DEBUG Processing 504/642 atomic regions from SNP 151066 to 151666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,588 DEBUG Processing 611/1016 atomic regions from SNP 183104 to 183704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,634 DEBUG Processing 191/229 atomic regions from SNP 57234 to 57835 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:18,745 DEBUG Processing 577/1127 atomic regions from SNP 172818 to 173418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:18,785 DEBUG Processing 702/883 atomic regions from SNP 210573 to 211173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:18,854 DEBUG Processing 719/850 atomic regions from SNP 215509 to 216109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:18,856 DEBUG Processing 505/642 atomic regions from SNP 151366 to 151966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:18,857 DEBUG Processing 612/1016 atomic regions from SNP 183404 to 184004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:18,875 DEBUG Processing 192/229 atomic regions from SNP 57535 to 58136 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,031 DEBUG Processing 578/1127 atomic regions from SNP 173118 to 173718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,069 DEBUG Processing 703/883 atomic regions from SNP 210873 to 211473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,126 DEBUG Processing 613/1016 atomic regions from SNP 183704 to 184304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,128 DEBUG Processing 193/229 atomic regions from SNP 57836 to 58437 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,149 DEBUG Processing 720/850 atomic regions from SNP 215809 to 216409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,158 DEBUG Processing 506/642 atomic regions from SNP 151666 to 152266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,316 DEBUG Processing 579/1127 atomic regions from SNP 173418 to 174018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,335 DEBUG Processing 704/883 atomic regions from SNP 211173 to 211773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,382 DEBUG Processing 194/229 atomic regions from SNP 58137 to 58738 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,397 DEBUG Processing 614/1016 atomic regions from SNP 184004 to 184604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,438 DEBUG Processing 721/850 atomic regions from SNP 216109 to 216709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,448 DEBUG Processing 507/642 atomic regions from SNP 151966 to 152566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,588 DEBUG Processing 705/883 atomic regions from SNP 211473 to 212073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,604 DEBUG Processing 580/1127 atomic regions from SNP 173718 to 174318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,632 DEBUG Processing 195/229 atomic regions from SNP 58438 to 59039 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,669 DEBUG Processing 615/1016 atomic regions from SNP 184304 to 184904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,693 DEBUG Processing 722/850 atomic regions from SNP 216409 to 217009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,719 DEBUG Processing 508/642 atomic regions from SNP 152266 to 152866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:19,836 DEBUG Processing 706/883 atomic regions from SNP 211773 to 212373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:19,886 DEBUG Processing 581/1127 atomic regions from SNP 174018 to 174618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:19,887 DEBUG Processing 196/229 atomic regions from SNP 58739 to 59340 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:19,944 DEBUG Processing 616/1016 atomic regions from SNP 184604 to 185204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:19,945 DEBUG Processing 723/850 atomic regions from SNP 216709 to 217309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:19,997 DEBUG Processing 509/642 atomic regions from SNP 152566 to 153166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,083 DEBUG Processing 707/883 atomic regions from SNP 212073 to 212673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,155 DEBUG Processing 197/229 atomic regions from SNP 59040 to 59641 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,169 DEBUG Processing 582/1127 atomic regions from SNP 174318 to 174918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,203 DEBUG Processing 724/850 atomic regions from SNP 217009 to 217609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,225 DEBUG Processing 617/1016 atomic regions from SNP 184904 to 185504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,289 DEBUG Processing 510/642 atomic regions from SNP 152866 to 153466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,337 DEBUG Processing 708/883 atomic regions from SNP 212373 to 212973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,395 DEBUG Processing 198/229 atomic regions from SNP 59341 to 59942 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,450 DEBUG Processing 583/1127 atomic regions from SNP 174618 to 175218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,451 DEBUG Processing 725/850 atomic regions from SNP 217309 to 217909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,507 DEBUG Processing 618/1016 atomic regions from SNP 185204 to 185804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,574 DEBUG Processing 511/642 atomic regions from SNP 153166 to 153766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,590 DEBUG Processing 709/883 atomic regions from SNP 212673 to 213273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,634 DEBUG Processing 199/229 atomic regions from SNP 59642 to 60243 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,695 DEBUG Processing 726/850 atomic regions from SNP 217609 to 218209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:20,744 DEBUG Processing 584/1127 atomic regions from SNP 174918 to 175518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:20,791 DEBUG Processing 619/1016 atomic regions from SNP 185504 to 186104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:20,846 DEBUG Processing 710/883 atomic regions from SNP 212973 to 213573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:20,860 DEBUG Processing 512/642 atomic regions from SNP 153466 to 154066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:20,882 DEBUG Processing 200/229 atomic regions from SNP 59943 to 60544 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:20,939 DEBUG Processing 727/850 atomic regions from SNP 217909 to 218509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,025 DEBUG Processing 585/1127 atomic regions from SNP 175218 to 175818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,073 DEBUG Processing 620/1016 atomic regions from SNP 185804 to 186404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,103 DEBUG Processing 711/883 atomic regions from SNP 213273 to 213873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,131 DEBUG Processing 201/229 atomic regions from SNP 60244 to 60845 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,147 DEBUG Processing 513/642 atomic regions from SNP 153766 to 154366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,192 DEBUG Processing 728/850 atomic regions from SNP 218209 to 218809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,306 DEBUG Processing 586/1127 atomic regions from SNP 175518 to 176118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,353 DEBUG Processing 621/1016 atomic regions from SNP 186104 to 186704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,368 DEBUG Processing 712/883 atomic regions from SNP 213573 to 214173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,375 DEBUG Processing 202/229 atomic regions from SNP 60545 to 61146 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,442 DEBUG Processing 514/642 atomic regions from SNP 154066 to 154666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,450 DEBUG Processing 729/850 atomic regions from SNP 218509 to 219109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,584 DEBUG Processing 587/1127 atomic regions from SNP 175818 to 176418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,611 DEBUG Processing 203/229 atomic regions from SNP 60846 to 61447 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,630 DEBUG Processing 622/1016 atomic regions from SNP 186404 to 187004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,652 DEBUG Processing 713/883 atomic regions from SNP 213873 to 214473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,705 DEBUG Processing 730/850 atomic regions from SNP 218809 to 219409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:21,736 DEBUG Processing 515/642 atomic regions from SNP 154366 to 154966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:21,844 DEBUG Processing 204/229 atomic regions from SNP 61147 to 61748 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:21,872 DEBUG Processing 588/1127 atomic regions from SNP 176118 to 176718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:21,910 DEBUG Processing 623/1016 atomic regions from SNP 186704 to 187304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:21,940 DEBUG Processing 714/883 atomic regions from SNP 214173 to 214773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:21,963 DEBUG Processing 731/850 atomic regions from SNP 219109 to 219709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,027 DEBUG Processing 516/642 atomic regions from SNP 154666 to 155266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,082 DEBUG Processing 205/229 atomic regions from SNP 61448 to 62049 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,156 DEBUG Processing 589/1127 atomic regions from SNP 176418 to 177018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,181 DEBUG Processing 624/1016 atomic regions from SNP 187004 to 187604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,211 DEBUG Processing 732/850 atomic regions from SNP 219409 to 220009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,227 DEBUG Processing 715/883 atomic regions from SNP 214473 to 215073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,316 DEBUG Processing 517/642 atomic regions from SNP 154966 to 155566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,324 DEBUG Processing 206/229 atomic regions from SNP 61749 to 62350 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,433 DEBUG Processing 590/1127 atomic regions from SNP 176718 to 177318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,450 DEBUG Processing 625/1016 atomic regions from SNP 187304 to 187904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,455 DEBUG Processing 733/850 atomic regions from SNP 219709 to 220309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,509 DEBUG Processing 716/883 atomic regions from SNP 214773 to 215373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,582 DEBUG Processing 207/229 atomic regions from SNP 62050 to 62651 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,612 DEBUG Processing 518/642 atomic regions from SNP 155266 to 155866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,700 DEBUG Processing 734/850 atomic regions from SNP 220009 to 220609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,716 DEBUG Processing 591/1127 atomic regions from SNP 177018 to 177618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:22,721 DEBUG Processing 626/1016 atomic regions from SNP 187604 to 188204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,767 DEBUG Processing 717/883 atomic regions from SNP 215073 to 215673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:22,825 DEBUG Processing 208/229 atomic regions from SNP 62351 to 62952 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:22,901 DEBUG Processing 519/642 atomic regions from SNP 155566 to 156166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:22,943 DEBUG Processing 735/850 atomic regions from SNP 220309 to 220909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:22,992 DEBUG Processing 627/1016 atomic regions from SNP 187904 to 188504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:22,992 DEBUG Processing 592/1127 atomic regions from SNP 177318 to 177918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,024 DEBUG Processing 718/883 atomic regions from SNP 215373 to 215973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,068 DEBUG Processing 209/229 atomic regions from SNP 62652 to 63253 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,186 DEBUG Processing 736/850 atomic regions from SNP 220609 to 221209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,186 DEBUG Processing 520/642 atomic regions from SNP 155866 to 156466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,264 DEBUG Processing 628/1016 atomic regions from SNP 188204 to 188804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,273 DEBUG Processing 593/1127 atomic regions from SNP 177618 to 178218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,281 DEBUG Processing 719/883 atomic regions from SNP 215673 to 216273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,311 DEBUG Processing 210/229 atomic regions from SNP 62953 to 63554 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,427 DEBUG Processing 737/850 atomic regions from SNP 220909 to 221509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,471 DEBUG Processing 521/642 atomic regions from SNP 156166 to 156766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,542 DEBUG Processing 629/1016 atomic regions from SNP 188504 to 189104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,552 DEBUG Processing 720/883 atomic regions from SNP 215973 to 216573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,555 DEBUG Processing 211/229 atomic regions from SNP 63254 to 63855 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,560 DEBUG Processing 594/1127 atomic regions from SNP 177918 to 178518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,670 DEBUG Processing 738/850 atomic regions from SNP 221209 to 221809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:23,754 DEBUG Processing 522/642 atomic regions from SNP 156466 to 157066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:23,797 DEBUG Processing 212/229 atomic regions from SNP 63555 to 64156 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:23,817 DEBUG Processing 630/1016 atomic regions from SNP 188804 to 189404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:23,832 DEBUG Processing 721/883 atomic regions from SNP 216273 to 216873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:23,847 DEBUG Processing 595/1127 atomic regions from SNP 178218 to 178818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:23,914 DEBUG Processing 739/850 atomic regions from SNP 221509 to 222109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,020 DEBUG Processing 523/642 atomic regions from SNP 156766 to 157366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,037 DEBUG Processing 213/229 atomic regions from SNP 63856 to 64457 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,090 DEBUG Processing 722/883 atomic regions from SNP 216573 to 217173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,091 DEBUG Processing 631/1016 atomic regions from SNP 189104 to 189704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,135 DEBUG Processing 596/1127 atomic regions from SNP 178518 to 179118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,160 DEBUG Processing 740/850 atomic regions from SNP 221809 to 222409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,276 DEBUG Processing 214/229 atomic regions from SNP 64157 to 64758 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,306 DEBUG Processing 524/642 atomic regions from SNP 157066 to 157666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,344 DEBUG Processing 723/883 atomic regions from SNP 216873 to 217473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,367 DEBUG Processing 632/1016 atomic regions from SNP 189404 to 190004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,401 DEBUG Processing 741/850 atomic regions from SNP 222109 to 222709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,425 DEBUG Processing 597/1127 atomic regions from SNP 178818 to 179418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,520 DEBUG Processing 215/229 atomic regions from SNP 64458 to 65059 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,602 DEBUG Processing 525/642 atomic regions from SNP 157366 to 157966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,603 DEBUG Processing 724/883 atomic regions from SNP 217173 to 217773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,647 DEBUG Processing 742/850 atomic regions from SNP 222409 to 223009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,649 DEBUG Processing 633/1016 atomic regions from SNP 189704 to 190304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,747 DEBUG Processing 598/1127 atomic regions from SNP 179118 to 179718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:24,754 DEBUG Processing 216/229 atomic regions from SNP 64759 to 65360 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:24,864 DEBUG Processing 725/883 atomic regions from SNP 217473 to 218073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:24,891 DEBUG Processing 526/642 atomic regions from SNP 157666 to 158266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:24,892 DEBUG Processing 743/850 atomic regions from SNP 222709 to 223309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:24,927 DEBUG Processing 634/1016 atomic regions from SNP 190004 to 190604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:24,989 DEBUG Processing 217/229 atomic regions from SNP 65060 to 65661 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,062 DEBUG Processing 599/1127 atomic regions from SNP 179418 to 180018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,136 DEBUG Processing 726/883 atomic regions from SNP 217773 to 218373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,144 DEBUG Processing 744/850 atomic regions from SNP 223009 to 223609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,168 DEBUG Processing 527/642 atomic regions from SNP 157966 to 158566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,214 DEBUG Processing 635/1016 atomic regions from SNP 190304 to 190904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,223 DEBUG Processing 218/229 atomic regions from SNP 65361 to 65962 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,358 DEBUG Processing 600/1127 atomic regions from SNP 179718 to 180318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,391 DEBUG Processing 727/883 atomic regions from SNP 218073 to 218673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,417 DEBUG Processing 745/850 atomic regions from SNP 223309 to 223909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,456 DEBUG Processing 528/642 atomic regions from SNP 158266 to 158866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,460 DEBUG Processing 219/229 atomic regions from SNP 65662 to 66263 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,510 DEBUG Processing 636/1016 atomic regions from SNP 190604 to 191204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,639 DEBUG Processing 601/1127 atomic regions from SNP 180018 to 180618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,645 DEBUG Processing 728/883 atomic regions from SNP 218373 to 218973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,699 DEBUG Processing 746/850 atomic regions from SNP 223609 to 224209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:25,702 DEBUG Processing 220/229 atomic regions from SNP 65963 to 66564 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,741 DEBUG Processing 529/642 atomic regions from SNP 158566 to 159166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:25,798 DEBUG Processing 637/1016 atomic regions from SNP 190904 to 191504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:25,893 DEBUG Processing 729/883 atomic regions from SNP 218673 to 219273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:25,930 DEBUG Processing 602/1127 atomic regions from SNP 180318 to 180918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:25,946 DEBUG Processing 221/229 atomic regions from SNP 66264 to 66865 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:25,960 DEBUG Processing 747/850 atomic regions from SNP 223909 to 224509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,036 DEBUG Processing 530/642 atomic regions from SNP 158866 to 159466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,061 DEBUG Processing 638/1016 atomic regions from SNP 191204 to 191804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,141 DEBUG Processing 730/883 atomic regions from SNP 218973 to 219573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,181 DEBUG Processing 222/229 atomic regions from SNP 66565 to 67166 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,228 DEBUG Processing 748/850 atomic regions from SNP 224209 to 224809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,240 DEBUG Processing 603/1127 atomic regions from SNP 180618 to 181218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,317 DEBUG Processing 531/642 atomic regions from SNP 159166 to 159766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,330 DEBUG Processing 639/1016 atomic regions from SNP 191504 to 192104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,393 DEBUG Processing 731/883 atomic regions from SNP 219273 to 219873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,414 DEBUG Processing 223/229 atomic regions from SNP 66866 to 67467 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,485 DEBUG Processing 749/850 atomic regions from SNP 224509 to 225109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,528 DEBUG Processing 604/1127 atomic regions from SNP 180918 to 181518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,582 DEBUG Processing 532/642 atomic regions from SNP 159466 to 160066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,602 DEBUG Processing 640/1016 atomic regions from SNP 191804 to 192404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,648 DEBUG Processing 732/883 atomic regions from SNP 219573 to 220173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:26,652 DEBUG Processing 224/229 atomic regions from SNP 67167 to 67768 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,766 DEBUG Processing 750/850 atomic regions from SNP 224809 to 225409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:26,822 DEBUG Processing 605/1127 atomic regions from SNP 181218 to 181818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:26,847 DEBUG Processing 533/642 atomic regions from SNP 159766 to 160366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:26,872 DEBUG Processing 641/1016 atomic regions from SNP 192104 to 192704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:26,896 DEBUG Processing 225/229 atomic regions from SNP 67468 to 68069 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:26,906 DEBUG Processing 733/883 atomic regions from SNP 219873 to 220473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,048 DEBUG Processing 751/850 atomic regions from SNP 225109 to 225709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,104 DEBUG Processing 606/1127 atomic regions from SNP 181518 to 182118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,110 DEBUG Processing 534/642 atomic regions from SNP 160066 to 160666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,139 DEBUG Processing 226/229 atomic regions from SNP 67769 to 68370 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,144 DEBUG Processing 642/1016 atomic regions from SNP 192404 to 193004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,167 DEBUG Processing 734/883 atomic regions from SNP 220173 to 220773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,327 DEBUG Processing 752/850 atomic regions from SNP 225409 to 226009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,381 DEBUG Processing 535/642 atomic regions from SNP 160366 to 160966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,384 DEBUG Processing 607/1127 atomic regions from SNP 181818 to 182418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,385 DEBUG Processing 227/229 atomic regions from SNP 68070 to 68671 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,420 DEBUG Processing 735/883 atomic regions from SNP 220473 to 221073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,421 DEBUG Processing 643/1016 atomic regions from SNP 192704 to 193304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,587 DEBUG Processing 753/850 atomic regions from SNP 225709 to 226309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,628 DEBUG Processing 228/229 atomic regions from SNP 68371 to 68972 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,646 DEBUG Processing 536/642 atomic regions from SNP 160666 to 161266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,665 DEBUG Processing 608/1127 atomic regions from SNP 182118 to 182718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,670 DEBUG Processing 736/883 atomic regions from SNP 220773 to 221373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,696 DEBUG Processing 644/1016 atomic regions from SNP 193004 to 193604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:27,840 DEBUG Processing 754/850 atomic regions from SNP 226009 to 226609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:27,871 DEBUG Processing 229/229 atomic regions from SNP 68672 to 69273 for chrX (subchromosome 6 of 6). 2025-01-31 09:46:27,914 DEBUG Processing 537/642 atomic regions from SNP 160966 to 161566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:27,922 DEBUG Processing 737/883 atomic regions from SNP 221073 to 221673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:27,941 DEBUG Processing 609/1127 atomic regions from SNP 182418 to 183018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:27,970 DEBUG Processing 645/1016 atomic regions from SNP 193304 to 193904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,010 DEBUG Unique SNPs positions in subchromosome 6: 69274 2025-01-31 09:46:28,111 DEBUG Processing 755/850 atomic regions from SNP 226309 to 226909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,133 DEBUG Subchromosome time: 64.66793479700573, subchromosome SNPs: 69274 2025-01-31 09:46:28,134 DEBUG Estimated BADs: [1.39, 6.93, 2.77, 5.55, 1.39, 0.00, 0.00, 2.77, 0.69, 2.77, 1.39, 5.55, 1.39, 0.69, 2.77, 1.39, 2.77, 1.39, 13.87, 0.46, 0.46, 1.39, 13.87] SNP counts: [3446, 3855, 4037, 3509, 17927, 2, 51, 6141, 14533, 10411, 28790, 4077, 2753, 22628, 7142, 5635, 11727, 7757, 99, 18702, 12523, 56714, 37] SNP IDs counts: [3446, 3855, 4037, 3509, 17927, 2, 51, 6141, 14533, 10411, 28790, 4077, 2753, 22628, 7142, 5635, 11727, 7757, 99, 18702, 12523, 56714, 37] Critical gap: 752664bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.32Mbp, 9.75Mbp, 11.97Mbp, 13.88Mbp, 26.91Mbp[1.11Mbp], 28.03Mbp[1.53Mbp], 29.91Mbp[1.22Mbp], 39.32Mbp, 48.12Mbp, 54.46Mbp[0.79Mbp], 72.98Mbp, 75.67Mbp, 77.43Mbp, 91.30Mbp, 95.96Mbp, 99.35Mbp, 106.07Mbp, 110.79Mbp, 110.85Mbp, 124.24Mbp[1.79Mbp], 134.05Mbp, 169.97Mbp, 171.03Mbp] 2025-01-31 09:46:28,134 DEBUG chrX time: 64.66853791405447 s 2025-01-31 09:46:28,178 DEBUG Processing 738/883 atomic regions from SNP 221373 to 221973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,181 DEBUG Processing 538/642 atomic regions from SNP 161266 to 161866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,214 DEBUG Processing 610/1127 atomic regions from SNP 182718 to 183318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,240 DEBUG Processing 646/1016 atomic regions from SNP 193604 to 194204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,309 DEBUG chrX: Fitting background model for 21 segments 2025-01-31 09:46:28,393 DEBUG Processing 756/850 atomic regions from SNP 226609 to 227209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,431 DEBUG Processing 739/883 atomic regions from SNP 221673 to 222273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,448 DEBUG Processing 539/642 atomic regions from SNP 161566 to 162166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,488 DEBUG Processing 611/1127 atomic regions from SNP 183018 to 183618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,509 DEBUG Processing 647/1016 atomic regions from SNP 193904 to 194504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,694 DEBUG Processing 757/850 atomic regions from SNP 226909 to 227509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:28,700 DEBUG Processing 740/883 atomic regions from SNP 221973 to 222573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,738 DEBUG Processing 540/642 atomic regions from SNP 161866 to 162466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:28,762 DEBUG Processing 612/1127 atomic regions from SNP 183318 to 183918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:28,782 DEBUG Processing 648/1016 atomic regions from SNP 194204 to 194804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:28,957 DEBUG Processing 741/883 atomic regions from SNP 222273 to 222873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:28,969 DEBUG Processing 758/850 atomic regions from SNP 227209 to 227809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,022 DEBUG Processing 541/642 atomic regions from SNP 162166 to 162766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,040 DEBUG Processing 613/1127 atomic regions from SNP 183618 to 184218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,059 DEBUG Processing 649/1016 atomic regions from SNP 194504 to 195104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,206 DEBUG Processing 742/883 atomic regions from SNP 222573 to 223173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,214 DEBUG Processing 759/850 atomic regions from SNP 227509 to 228109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,293 DEBUG Processing 542/642 atomic regions from SNP 162466 to 163066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,324 DEBUG Processing 614/1127 atomic regions from SNP 183918 to 184518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,342 DEBUG Processing 650/1016 atomic regions from SNP 194804 to 195404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,452 DEBUG Processing 743/883 atomic regions from SNP 222873 to 223473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,452 DEBUG Processing 760/850 atomic regions from SNP 227809 to 228409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,579 DEBUG Processing 543/642 atomic regions from SNP 162766 to 163366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,612 DEBUG Processing 615/1127 atomic regions from SNP 184218 to 184818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,624 DEBUG Processing 651/1016 atomic regions from SNP 195104 to 195704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,697 DEBUG Processing 761/850 atomic regions from SNP 228109 to 228709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,703 DEBUG Processing 744/883 atomic regions from SNP 223173 to 223773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:29,863 DEBUG Processing 544/642 atomic regions from SNP 163066 to 163666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:29,900 DEBUG Processing 616/1127 atomic regions from SNP 184518 to 185118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:29,906 DEBUG Processing 652/1016 atomic regions from SNP 195404 to 196004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:29,960 DEBUG Processing 762/850 atomic regions from SNP 228409 to 229009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:29,960 DEBUG Processing 745/883 atomic regions from SNP 223473 to 224073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,120 DEBUG Processing 545/642 atomic regions from SNP 163366 to 163966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,184 DEBUG Processing 653/1016 atomic regions from SNP 195704 to 196304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,185 DEBUG Processing 617/1127 atomic regions from SNP 184818 to 185418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,226 DEBUG Processing 746/883 atomic regions from SNP 223773 to 224373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,247 DEBUG Processing 763/850 atomic regions from SNP 228709 to 229309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,371 DEBUG Processing 546/642 atomic regions from SNP 163666 to 164266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,468 DEBUG Processing 654/1016 atomic regions from SNP 196004 to 196604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,474 DEBUG Processing 618/1127 atomic regions from SNP 185118 to 185718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,514 DEBUG Processing 747/883 atomic regions from SNP 224073 to 224673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,538 DEBUG Processing 764/850 atomic regions from SNP 229009 to 229609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,625 DEBUG Processing 547/642 atomic regions from SNP 163966 to 164566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:30,745 DEBUG Processing 655/1016 atomic regions from SNP 196304 to 196904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:30,761 DEBUG Processing 619/1127 atomic regions from SNP 185418 to 186018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:30,813 DEBUG Processing 748/883 atomic regions from SNP 224373 to 224973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:30,825 DEBUG Processing 765/850 atomic regions from SNP 229309 to 229909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:30,890 DEBUG Processing 548/642 atomic regions from SNP 164266 to 164866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,019 DEBUG Processing 656/1016 atomic regions from SNP 196604 to 197204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,045 DEBUG Processing 620/1127 atomic regions from SNP 185718 to 186318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,109 DEBUG Processing 749/883 atomic regions from SNP 224673 to 225273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,121 DEBUG Processing 766/850 atomic regions from SNP 229609 to 230209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,175 DEBUG Processing 549/642 atomic regions from SNP 164566 to 165166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,300 DEBUG Processing 657/1016 atomic regions from SNP 196904 to 197504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,343 DEBUG Processing 621/1127 atomic regions from SNP 186018 to 186618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,401 DEBUG Processing 750/883 atomic regions from SNP 224973 to 225573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,421 DEBUG Processing 767/850 atomic regions from SNP 229909 to 230509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,458 DEBUG Processing 550/642 atomic regions from SNP 164866 to 165466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,572 DEBUG Processing 658/1016 atomic regions from SNP 197204 to 197804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,632 DEBUG Processing 622/1127 atomic regions from SNP 186318 to 186918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,690 DEBUG Processing 751/883 atomic regions from SNP 225273 to 225873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,707 DEBUG Processing 768/850 atomic regions from SNP 230209 to 230809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:31,735 DEBUG Processing 551/642 atomic regions from SNP 165166 to 165766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:31,843 DEBUG Processing 659/1016 atomic regions from SNP 197504 to 198104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:31,920 DEBUG Processing 623/1127 atomic regions from SNP 186618 to 187218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:31,951 DEBUG Processing 752/883 atomic regions from SNP 225573 to 226173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:31,985 DEBUG Processing 769/850 atomic regions from SNP 230509 to 231109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,017 DEBUG Processing 552/642 atomic regions from SNP 165466 to 166066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,113 DEBUG Processing 660/1016 atomic regions from SNP 197804 to 198404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,208 DEBUG Processing 624/1127 atomic regions from SNP 186918 to 187518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,210 DEBUG Processing 753/883 atomic regions from SNP 225873 to 226473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,271 DEBUG Processing 770/850 atomic regions from SNP 230809 to 231409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,308 DEBUG Processing 553/642 atomic regions from SNP 165766 to 166366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,389 DEBUG Processing 661/1016 atomic regions from SNP 198104 to 198704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,464 DEBUG Processing 754/883 atomic regions from SNP 226173 to 226773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,501 DEBUG Processing 625/1127 atomic regions from SNP 187218 to 187818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,530 DEBUG Processing 771/850 atomic regions from SNP 231109 to 231709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,588 DEBUG Processing 554/642 atomic regions from SNP 166066 to 166666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,663 DEBUG Processing 662/1016 atomic regions from SNP 198404 to 199004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,714 DEBUG Processing 755/883 atomic regions from SNP 226473 to 227073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:32,781 DEBUG Processing 772/850 atomic regions from SNP 231409 to 232009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:32,786 DEBUG Processing 626/1127 atomic regions from SNP 187518 to 188118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:32,850 DEBUG Processing 555/642 atomic regions from SNP 166366 to 166966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:32,941 DEBUG Processing 663/1016 atomic regions from SNP 198704 to 199304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:32,966 DEBUG Processing 756/883 atomic regions from SNP 226773 to 227373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,029 DEBUG Processing 773/850 atomic regions from SNP 231709 to 232309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,070 DEBUG Processing 627/1127 atomic regions from SNP 187818 to 188418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,111 DEBUG Processing 556/642 atomic regions from SNP 166666 to 167266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,218 DEBUG Processing 757/883 atomic regions from SNP 227073 to 227673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,218 DEBUG Processing 664/1016 atomic regions from SNP 199004 to 199604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,275 DEBUG Processing 774/850 atomic regions from SNP 232009 to 232609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,350 DEBUG Processing 628/1127 atomic regions from SNP 188118 to 188718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,370 DEBUG Processing 557/642 atomic regions from SNP 166966 to 167566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,473 DEBUG Processing 758/883 atomic regions from SNP 227373 to 227973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,502 DEBUG Processing 665/1016 atomic regions from SNP 199304 to 199904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,539 DEBUG Processing 775/850 atomic regions from SNP 232309 to 232909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,631 DEBUG Processing 629/1127 atomic regions from SNP 188418 to 189018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,648 DEBUG Processing 558/642 atomic regions from SNP 167266 to 167866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,730 DEBUG Processing 759/883 atomic regions from SNP 227673 to 228273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:33,780 DEBUG Processing 666/1016 atomic regions from SNP 199604 to 200204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:33,817 DEBUG Processing 776/850 atomic regions from SNP 232609 to 233209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:33,908 DEBUG Processing 630/1127 atomic regions from SNP 188718 to 189318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:33,940 DEBUG Processing 559/642 atomic regions from SNP 167566 to 168166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:33,990 DEBUG Processing 760/883 atomic regions from SNP 227973 to 228573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,057 DEBUG Processing 667/1016 atomic regions from SNP 199904 to 200504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,091 DEBUG Processing 777/850 atomic regions from SNP 232909 to 233509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,190 DEBUG Processing 631/1127 atomic regions from SNP 189018 to 189618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,228 DEBUG Processing 560/642 atomic regions from SNP 167866 to 168466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,251 DEBUG Processing 761/883 atomic regions from SNP 228273 to 228873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,327 DEBUG Processing 668/1016 atomic regions from SNP 200204 to 200804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,346 DEBUG Processing 778/850 atomic regions from SNP 233209 to 233809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,478 DEBUG Processing 632/1127 atomic regions from SNP 189318 to 189918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,512 DEBUG Processing 762/883 atomic regions from SNP 228573 to 229173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,527 DEBUG Processing 561/642 atomic regions from SNP 168166 to 168766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,593 DEBUG Processing 669/1016 atomic regions from SNP 200504 to 201104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,631 DEBUG Processing 779/850 atomic regions from SNP 233509 to 234109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:34,765 DEBUG Processing 633/1127 atomic regions from SNP 189618 to 190218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:34,787 DEBUG Processing 763/883 atomic regions from SNP 228873 to 229473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:34,811 DEBUG Processing 562/642 atomic regions from SNP 168466 to 169066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:34,857 DEBUG Processing 670/1016 atomic regions from SNP 200804 to 201404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:34,908 DEBUG Processing 780/850 atomic regions from SNP 233809 to 234409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,042 DEBUG Processing 764/883 atomic regions from SNP 229173 to 229773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,047 DEBUG Processing 634/1127 atomic regions from SNP 189918 to 190518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,080 DEBUG Processing 563/642 atomic regions from SNP 168766 to 169366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,129 DEBUG Processing 671/1016 atomic regions from SNP 201104 to 201704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,180 DEBUG Processing 781/850 atomic regions from SNP 234109 to 234709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,293 DEBUG Processing 765/883 atomic regions from SNP 229473 to 230073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,325 DEBUG Processing 635/1127 atomic regions from SNP 190218 to 190818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,364 DEBUG Processing 564/642 atomic regions from SNP 169066 to 169666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,403 DEBUG Processing 672/1016 atomic regions from SNP 201404 to 202004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,448 DEBUG Processing 782/850 atomic regions from SNP 234409 to 235009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,543 DEBUG Processing 766/883 atomic regions from SNP 229773 to 230373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,603 DEBUG Processing 636/1127 atomic regions from SNP 190518 to 191118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,639 DEBUG Processing 565/642 atomic regions from SNP 169366 to 169966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,682 DEBUG Processing 673/1016 atomic regions from SNP 201704 to 202304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:35,737 DEBUG Processing 783/850 atomic regions from SNP 234709 to 235309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:35,795 DEBUG Processing 767/883 atomic regions from SNP 230073 to 230673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:35,881 DEBUG Processing 637/1127 atomic regions from SNP 190818 to 191418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:35,910 DEBUG Processing 566/642 atomic regions from SNP 169666 to 170266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:35,975 DEBUG Processing 674/1016 atomic regions from SNP 202004 to 202604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,024 DEBUG Processing 784/850 atomic regions from SNP 235009 to 235609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,055 DEBUG Processing 768/883 atomic regions from SNP 230373 to 230973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,156 DEBUG Processing 567/642 atomic regions from SNP 169966 to 170566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,164 DEBUG Processing 638/1127 atomic regions from SNP 191118 to 191718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,283 DEBUG Processing 675/1016 atomic regions from SNP 202304 to 202904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,312 DEBUG Processing 785/850 atomic regions from SNP 235309 to 235909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,319 DEBUG Processing 769/883 atomic regions from SNP 230673 to 231273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,405 DEBUG Processing 568/642 atomic regions from SNP 170266 to 170866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,448 DEBUG Processing 639/1127 atomic regions from SNP 191418 to 192018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,580 DEBUG Processing 786/850 atomic regions from SNP 235609 to 236209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,584 DEBUG Processing 770/883 atomic regions from SNP 230973 to 231573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,589 DEBUG Processing 676/1016 atomic regions from SNP 202604 to 203204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,668 DEBUG Processing 569/642 atomic regions from SNP 170566 to 171166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:36,733 DEBUG Processing 640/1127 atomic regions from SNP 191718 to 192318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:36,828 DEBUG Processing 787/850 atomic regions from SNP 235909 to 236509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:36,841 DEBUG Processing 771/883 atomic regions from SNP 231273 to 231873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:36,893 DEBUG Processing 677/1016 atomic regions from SNP 202904 to 203504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:36,930 DEBUG Processing 570/642 atomic regions from SNP 170866 to 171466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,017 DEBUG Processing 641/1127 atomic regions from SNP 192018 to 192618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,065 DEBUG Processing 788/850 atomic regions from SNP 236209 to 236809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,088 DEBUG Processing 772/883 atomic regions from SNP 231573 to 232173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,193 DEBUG Processing 571/642 atomic regions from SNP 171166 to 171766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,199 DEBUG Processing 678/1016 atomic regions from SNP 203204 to 203804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,300 DEBUG Processing 642/1127 atomic regions from SNP 192318 to 192918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,312 DEBUG Processing 789/850 atomic regions from SNP 236509 to 237109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,334 DEBUG Processing 773/883 atomic regions from SNP 231873 to 232473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,455 DEBUG Processing 572/642 atomic regions from SNP 171466 to 172066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,501 DEBUG Processing 679/1016 atomic regions from SNP 203504 to 204104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,559 DEBUG Processing 790/850 atomic regions from SNP 236809 to 237409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,584 DEBUG Processing 643/1127 atomic regions from SNP 192618 to 193218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,585 DEBUG Processing 774/883 atomic regions from SNP 232173 to 232773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,712 DEBUG Processing 573/642 atomic regions from SNP 171766 to 172366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:37,788 DEBUG Processing 680/1016 atomic regions from SNP 203804 to 204404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:37,810 DEBUG Processing 791/850 atomic regions from SNP 237109 to 237709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:37,842 DEBUG Processing 775/883 atomic regions from SNP 232473 to 233073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:37,870 DEBUG Processing 644/1127 atomic regions from SNP 192918 to 193518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:37,963 DEBUG Processing 574/642 atomic regions from SNP 172066 to 172666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,062 DEBUG Processing 792/850 atomic regions from SNP 237409 to 238009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,069 DEBUG Processing 681/1016 atomic regions from SNP 204104 to 204704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,101 DEBUG Processing 776/883 atomic regions from SNP 232773 to 233373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,159 DEBUG Processing 645/1127 atomic regions from SNP 193218 to 193818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,217 DEBUG Processing 575/642 atomic regions from SNP 172366 to 172966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,306 DEBUG Processing 793/850 atomic regions from SNP 237709 to 238309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,342 DEBUG Processing 682/1016 atomic regions from SNP 204404 to 205004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,356 DEBUG Processing 777/883 atomic regions from SNP 233073 to 233673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,450 DEBUG Processing 646/1127 atomic regions from SNP 193518 to 194118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,472 DEBUG Processing 576/642 atomic regions from SNP 172666 to 173266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,551 DEBUG Processing 794/850 atomic regions from SNP 238009 to 238609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,604 DEBUG Processing 778/883 atomic regions from SNP 233373 to 233973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,627 DEBUG Processing 683/1016 atomic regions from SNP 204704 to 205304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,732 DEBUG Processing 577/642 atomic regions from SNP 172966 to 173566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:38,743 DEBUG Processing 647/1127 atomic regions from SNP 193818 to 194418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:38,800 DEBUG Processing 795/850 atomic regions from SNP 238309 to 238909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:38,849 DEBUG Processing 779/883 atomic regions from SNP 233673 to 234273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:38,904 DEBUG Processing 684/1016 atomic regions from SNP 205004 to 205604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:38,992 DEBUG Processing 578/642 atomic regions from SNP 173266 to 173866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,037 DEBUG Processing 648/1127 atomic regions from SNP 194118 to 194718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,080 DEBUG Processing 796/850 atomic regions from SNP 238609 to 239209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,097 DEBUG Processing 780/883 atomic regions from SNP 233973 to 234573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,165 DEBUG Processing 685/1016 atomic regions from SNP 205304 to 205904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,252 DEBUG Processing 579/642 atomic regions from SNP 173566 to 174166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,331 DEBUG Processing 649/1127 atomic regions from SNP 194418 to 195018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,354 DEBUG Processing 781/883 atomic regions from SNP 234273 to 234873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,355 DEBUG Processing 797/850 atomic regions from SNP 238909 to 239509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,432 DEBUG Processing 686/1016 atomic regions from SNP 205604 to 206204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,506 DEBUG Processing 580/642 atomic regions from SNP 173866 to 174466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,615 DEBUG Processing 782/883 atomic regions from SNP 234573 to 235173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,627 DEBUG Processing 650/1127 atomic regions from SNP 194718 to 195318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,643 DEBUG Processing 798/850 atomic regions from SNP 239209 to 239809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:39,724 DEBUG Processing 687/1016 atomic regions from SNP 205904 to 206504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:39,764 DEBUG Processing 581/642 atomic regions from SNP 174166 to 174766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:39,891 DEBUG Processing 783/883 atomic regions from SNP 234873 to 235473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:39,927 DEBUG Processing 651/1127 atomic regions from SNP 195018 to 195618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:39,947 DEBUG Processing 799/850 atomic regions from SNP 239509 to 240109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,006 DEBUG Processing 688/1016 atomic regions from SNP 206204 to 206804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,018 DEBUG Processing 582/642 atomic regions from SNP 174466 to 175066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,146 DEBUG Processing 784/883 atomic regions from SNP 235173 to 235773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,218 DEBUG Processing 652/1127 atomic regions from SNP 195318 to 195918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,225 DEBUG Processing 800/850 atomic regions from SNP 239809 to 240409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,295 DEBUG Processing 583/642 atomic regions from SNP 174766 to 175366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,301 DEBUG Processing 689/1016 atomic regions from SNP 206504 to 207104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,399 DEBUG Processing 785/883 atomic regions from SNP 235473 to 236073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,510 DEBUG Processing 653/1127 atomic regions from SNP 195618 to 196218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,512 DEBUG Processing 801/850 atomic regions from SNP 240109 to 240709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,570 DEBUG Processing 584/642 atomic regions from SNP 175066 to 175666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,588 DEBUG Processing 690/1016 atomic regions from SNP 206804 to 207404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,653 DEBUG Processing 786/883 atomic regions from SNP 235773 to 236373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:40,796 DEBUG Processing 802/850 atomic regions from SNP 240409 to 241009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:40,797 DEBUG Processing 654/1127 atomic regions from SNP 195918 to 196518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:40,825 DEBUG Processing 585/642 atomic regions from SNP 175366 to 175966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:40,864 DEBUG Processing 691/1016 atomic regions from SNP 207104 to 207704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:40,910 DEBUG Processing 787/883 atomic regions from SNP 236073 to 236673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,078 DEBUG Processing 586/642 atomic regions from SNP 175666 to 176266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,082 DEBUG Processing 655/1127 atomic regions from SNP 196218 to 196818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,082 DEBUG Processing 803/850 atomic regions from SNP 240709 to 241309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,160 DEBUG Processing 788/883 atomic regions from SNP 236373 to 236973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,163 DEBUG Processing 692/1016 atomic regions from SNP 207404 to 208004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,334 DEBUG Processing 587/642 atomic regions from SNP 175966 to 176566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,360 DEBUG Processing 656/1127 atomic regions from SNP 196518 to 197118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,368 DEBUG Processing 804/850 atomic regions from SNP 241009 to 241609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,415 DEBUG Processing 789/883 atomic regions from SNP 236673 to 237273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,447 DEBUG Processing 693/1016 atomic regions from SNP 207704 to 208304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,590 DEBUG Processing 588/642 atomic regions from SNP 176266 to 176866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,638 DEBUG Processing 657/1127 atomic regions from SNP 196818 to 197418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,645 DEBUG Processing 805/850 atomic regions from SNP 241309 to 241909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,672 DEBUG Processing 790/883 atomic regions from SNP 236973 to 237573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:41,725 DEBUG Processing 694/1016 atomic regions from SNP 208004 to 208604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:41,846 DEBUG Processing 589/642 atomic regions from SNP 176566 to 177166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:41,912 DEBUG Processing 806/850 atomic regions from SNP 241609 to 242209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:41,919 DEBUG Processing 658/1127 atomic regions from SNP 197118 to 197718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:41,930 DEBUG Processing 791/883 atomic regions from SNP 237273 to 237873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,006 DEBUG Processing 695/1016 atomic regions from SNP 208304 to 208904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,104 DEBUG Processing 590/642 atomic regions from SNP 176866 to 177466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,190 DEBUG Processing 792/883 atomic regions from SNP 237573 to 238173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,190 DEBUG Processing 807/850 atomic regions from SNP 241909 to 242509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,203 DEBUG Processing 659/1127 atomic regions from SNP 197418 to 198018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,286 DEBUG Processing 696/1016 atomic regions from SNP 208604 to 209204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,384 DEBUG Processing 591/642 atomic regions from SNP 177166 to 177766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,448 DEBUG Processing 808/850 atomic regions from SNP 242209 to 242809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,450 DEBUG Processing 793/883 atomic regions from SNP 237873 to 238473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,487 DEBUG Processing 660/1127 atomic regions from SNP 197718 to 198318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,586 DEBUG Processing 697/1016 atomic regions from SNP 208904 to 209504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,687 DEBUG Processing 592/642 atomic regions from SNP 177466 to 178066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,713 DEBUG Processing 809/850 atomic regions from SNP 242509 to 243109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,724 DEBUG Processing 794/883 atomic regions from SNP 238173 to 238773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:42,778 DEBUG Processing 661/1127 atomic regions from SNP 198018 to 198618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:42,895 DEBUG Processing 698/1016 atomic regions from SNP 209204 to 209804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:42,969 DEBUG Processing 593/642 atomic regions from SNP 177766 to 178366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:42,978 DEBUG Processing 810/850 atomic regions from SNP 242809 to 243409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:42,991 DEBUG Processing 795/883 atomic regions from SNP 238473 to 239073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,059 DEBUG Processing 662/1127 atomic regions from SNP 198318 to 198918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,165 DEBUG Processing 699/1016 atomic regions from SNP 209504 to 210104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,249 DEBUG Processing 594/642 atomic regions from SNP 178066 to 178666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,250 DEBUG Processing 811/850 atomic regions from SNP 243109 to 243709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,255 DEBUG Processing 796/883 atomic regions from SNP 238773 to 239373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,335 DEBUG Processing 663/1127 atomic regions from SNP 198618 to 199218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,439 DEBUG Processing 700/1016 atomic regions from SNP 209804 to 210404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,519 DEBUG Processing 797/883 atomic regions from SNP 239073 to 239673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,531 DEBUG Processing 812/850 atomic regions from SNP 243409 to 244009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,537 DEBUG Processing 595/642 atomic regions from SNP 178366 to 178966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,608 DEBUG Processing 664/1127 atomic regions from SNP 198918 to 199518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,712 DEBUG Processing 701/1016 atomic regions from SNP 210104 to 210704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:43,778 DEBUG Processing 798/883 atomic regions from SNP 239373 to 239973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:43,821 DEBUG Processing 813/850 atomic regions from SNP 243709 to 244309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:43,824 DEBUG Processing 596/642 atomic regions from SNP 178666 to 179266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:43,877 DEBUG Processing 665/1127 atomic regions from SNP 199218 to 199818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:43,988 DEBUG Processing 702/1016 atomic regions from SNP 210404 to 211004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,030 DEBUG Processing 799/883 atomic regions from SNP 239673 to 240273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,075 DEBUG Processing 814/850 atomic regions from SNP 244009 to 244609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,114 DEBUG Processing 597/642 atomic regions from SNP 178966 to 179566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,172 DEBUG Processing 666/1127 atomic regions from SNP 199518 to 200118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,261 DEBUG Processing 703/1016 atomic regions from SNP 210704 to 211304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,276 DEBUG Processing 800/883 atomic regions from SNP 239973 to 240573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,324 DEBUG Processing 815/850 atomic regions from SNP 244309 to 244909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,402 DEBUG Processing 598/642 atomic regions from SNP 179266 to 179866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,479 DEBUG Processing 667/1127 atomic regions from SNP 199818 to 200418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,524 DEBUG Processing 801/883 atomic regions from SNP 240273 to 240873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,532 DEBUG Processing 704/1016 atomic regions from SNP 211004 to 211604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,568 DEBUG Processing 816/850 atomic regions from SNP 244609 to 245209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,687 DEBUG Processing 599/642 atomic regions from SNP 179566 to 180166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:44,753 DEBUG Processing 668/1127 atomic regions from SNP 200118 to 200718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:44,777 DEBUG Processing 802/883 atomic regions from SNP 240573 to 241173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:44,804 DEBUG Processing 705/1016 atomic regions from SNP 211304 to 211904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:44,815 DEBUG Processing 817/850 atomic regions from SNP 244909 to 245509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:44,960 DEBUG Processing 600/642 atomic regions from SNP 179866 to 180466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,027 DEBUG Processing 669/1127 atomic regions from SNP 200418 to 201018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,037 DEBUG Processing 803/883 atomic regions from SNP 240873 to 241473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,078 DEBUG Processing 706/1016 atomic regions from SNP 211604 to 212204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,094 DEBUG Processing 818/850 atomic regions from SNP 245209 to 245809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,227 DEBUG Processing 601/642 atomic regions from SNP 180166 to 180766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,296 DEBUG Processing 804/883 atomic regions from SNP 241173 to 241773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,298 DEBUG Processing 670/1127 atomic regions from SNP 200718 to 201318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,352 DEBUG Processing 707/1016 atomic regions from SNP 211904 to 212504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,359 DEBUG Processing 819/850 atomic regions from SNP 245509 to 246109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,493 DEBUG Processing 602/642 atomic regions from SNP 180466 to 181066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,550 DEBUG Processing 805/883 atomic regions from SNP 241473 to 242073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,571 DEBUG Processing 671/1127 atomic regions from SNP 201018 to 201618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,618 DEBUG Processing 820/850 atomic regions from SNP 245809 to 246409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,629 DEBUG Processing 708/1016 atomic regions from SNP 212204 to 212804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:45,758 DEBUG Processing 603/642 atomic regions from SNP 180766 to 181366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:45,795 DEBUG Processing 806/883 atomic regions from SNP 241773 to 242373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:45,851 DEBUG Processing 672/1127 atomic regions from SNP 201318 to 201918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:45,890 DEBUG Processing 821/850 atomic regions from SNP 246109 to 246709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:45,902 DEBUG Processing 709/1016 atomic regions from SNP 212504 to 213104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,023 DEBUG Processing 604/642 atomic regions from SNP 181066 to 181666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,036 DEBUG Processing 807/883 atomic regions from SNP 242073 to 242673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,152 DEBUG Processing 673/1127 atomic regions from SNP 201618 to 202218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,166 DEBUG Processing 822/850 atomic regions from SNP 246409 to 247009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,171 DEBUG Processing 710/1016 atomic regions from SNP 212804 to 213404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,281 DEBUG Processing 808/883 atomic regions from SNP 242373 to 242973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,304 DEBUG Processing 605/642 atomic regions from SNP 181366 to 181966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,433 DEBUG Processing 823/850 atomic regions from SNP 246709 to 247309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,440 DEBUG Processing 711/1016 atomic regions from SNP 213104 to 213704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,456 DEBUG Processing 674/1127 atomic regions from SNP 201918 to 202518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,533 DEBUG Processing 809/883 atomic regions from SNP 242673 to 243273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,581 DEBUG Processing 606/642 atomic regions from SNP 181666 to 182266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,691 DEBUG Processing 824/850 atomic regions from SNP 247009 to 247609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,709 DEBUG Processing 712/1016 atomic regions from SNP 213404 to 214004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:46,738 DEBUG Processing 675/1127 atomic regions from SNP 202218 to 202818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:46,791 DEBUG Processing 810/883 atomic regions from SNP 242973 to 243573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:46,845 DEBUG Processing 607/642 atomic regions from SNP 181966 to 182566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:46,942 DEBUG Processing 825/850 atomic regions from SNP 247309 to 247909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:46,983 DEBUG Processing 713/1016 atomic regions from SNP 213704 to 214304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,040 DEBUG Processing 676/1127 atomic regions from SNP 202518 to 203118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,051 DEBUG Processing 811/883 atomic regions from SNP 243273 to 243873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,120 DEBUG Processing 608/642 atomic regions from SNP 182266 to 182866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,191 DEBUG Processing 826/850 atomic regions from SNP 247609 to 248209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,252 DEBUG Processing 714/1016 atomic regions from SNP 214004 to 214604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,304 DEBUG Processing 812/883 atomic regions from SNP 243573 to 244173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,334 DEBUG Processing 677/1127 atomic regions from SNP 202818 to 203418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,387 DEBUG Processing 609/642 atomic regions from SNP 182566 to 183166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,445 DEBUG Processing 827/850 atomic regions from SNP 247909 to 248509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,513 DEBUG Processing 715/1016 atomic regions from SNP 214304 to 214904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,550 DEBUG Processing 813/883 atomic regions from SNP 243873 to 244473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,635 DEBUG Processing 678/1127 atomic regions from SNP 203118 to 203718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,670 DEBUG Processing 610/642 atomic regions from SNP 182866 to 183466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:47,727 DEBUG Processing 828/850 atomic regions from SNP 248209 to 248809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:47,776 DEBUG Processing 716/1016 atomic regions from SNP 214604 to 215204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:47,792 DEBUG Processing 814/883 atomic regions from SNP 244173 to 244773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:47,932 DEBUG Processing 679/1127 atomic regions from SNP 203418 to 204018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:47,962 DEBUG Processing 611/642 atomic regions from SNP 183166 to 183766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,004 DEBUG Processing 829/850 atomic regions from SNP 248509 to 249109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,056 DEBUG Processing 717/1016 atomic regions from SNP 214904 to 215504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,060 DEBUG Processing 815/883 atomic regions from SNP 244473 to 245073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,226 DEBUG Processing 680/1127 atomic regions from SNP 203718 to 204318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,235 DEBUG Processing 612/642 atomic regions from SNP 183466 to 184066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,271 DEBUG Processing 830/850 atomic regions from SNP 248809 to 249409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,316 DEBUG Processing 816/883 atomic regions from SNP 244773 to 245373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,334 DEBUG Processing 718/1016 atomic regions from SNP 215204 to 215804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,499 DEBUG Processing 613/642 atomic regions from SNP 183766 to 184366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,517 DEBUG Processing 681/1127 atomic regions from SNP 204018 to 204618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,549 DEBUG Processing 831/850 atomic regions from SNP 249109 to 249709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,582 DEBUG Processing 817/883 atomic regions from SNP 245073 to 245673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,612 DEBUG Processing 719/1016 atomic regions from SNP 215504 to 216104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:48,756 DEBUG Processing 614/642 atomic regions from SNP 184066 to 184666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:48,805 DEBUG Processing 682/1127 atomic regions from SNP 204318 to 204918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:48,817 DEBUG Processing 832/850 atomic regions from SNP 249409 to 250009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:48,849 DEBUG Processing 818/883 atomic regions from SNP 245373 to 245973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:48,885 DEBUG Processing 720/1016 atomic regions from SNP 215804 to 216404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,010 DEBUG Processing 615/642 atomic regions from SNP 184366 to 184966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,078 DEBUG Processing 833/850 atomic regions from SNP 249709 to 250309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,097 DEBUG Processing 683/1127 atomic regions from SNP 204618 to 205218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,111 DEBUG Processing 819/883 atomic regions from SNP 245673 to 246273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,159 DEBUG Processing 721/1016 atomic regions from SNP 216104 to 216704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,293 DEBUG Processing 616/642 atomic regions from SNP 184666 to 185266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,339 DEBUG Processing 834/850 atomic regions from SNP 250009 to 250609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,373 DEBUG Processing 820/883 atomic regions from SNP 245973 to 246573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,376 DEBUG Processing 684/1127 atomic regions from SNP 204918 to 205518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,430 DEBUG Processing 722/1016 atomic regions from SNP 216404 to 217004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,581 DEBUG Processing 617/642 atomic regions from SNP 184966 to 185566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,615 DEBUG Processing 835/850 atomic regions from SNP 250309 to 250909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,631 DEBUG Processing 821/883 atomic regions from SNP 246273 to 246873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,653 DEBUG Processing 685/1127 atomic regions from SNP 205218 to 205818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,705 DEBUG Processing 723/1016 atomic regions from SNP 216704 to 217304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:49,863 DEBUG Processing 618/642 atomic regions from SNP 185266 to 185866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:49,892 DEBUG Processing 822/883 atomic regions from SNP 246573 to 247173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:49,895 DEBUG Processing 836/850 atomic regions from SNP 250609 to 251209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:49,930 DEBUG Processing 686/1127 atomic regions from SNP 205518 to 206118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:49,975 DEBUG Processing 724/1016 atomic regions from SNP 217004 to 217604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,143 DEBUG Processing 619/642 atomic regions from SNP 185566 to 186166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,151 DEBUG Processing 823/883 atomic regions from SNP 246873 to 247473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,166 DEBUG Processing 837/850 atomic regions from SNP 250909 to 251509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,206 DEBUG Processing 687/1127 atomic regions from SNP 205818 to 206418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,242 DEBUG Processing 725/1016 atomic regions from SNP 217304 to 217904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,401 DEBUG Processing 620/642 atomic regions from SNP 185866 to 186466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,412 DEBUG Processing 824/883 atomic regions from SNP 247173 to 247773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,418 DEBUG Processing 838/850 atomic regions from SNP 251209 to 251809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,483 DEBUG Processing 688/1127 atomic regions from SNP 206118 to 206718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,520 DEBUG Processing 726/1016 atomic regions from SNP 217604 to 218204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,666 DEBUG Processing 621/642 atomic regions from SNP 186166 to 186766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,683 DEBUG Processing 825/883 atomic regions from SNP 247473 to 248073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,710 DEBUG Processing 839/850 atomic regions from SNP 251509 to 252109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:50,760 DEBUG Processing 689/1127 atomic regions from SNP 206418 to 207018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:50,813 DEBUG Processing 727/1016 atomic regions from SNP 217904 to 218504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:50,918 DEBUG Processing 622/642 atomic regions from SNP 186466 to 187066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:50,939 DEBUG Processing 826/883 atomic regions from SNP 247773 to 248373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:50,970 DEBUG Processing 840/850 atomic regions from SNP 251809 to 252409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,031 DEBUG Processing 690/1127 atomic regions from SNP 206718 to 207318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,103 DEBUG Processing 728/1016 atomic regions from SNP 218204 to 218804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,165 DEBUG Processing 623/642 atomic regions from SNP 186766 to 187366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,190 DEBUG Processing 827/883 atomic regions from SNP 248073 to 248673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,213 DEBUG Processing 841/850 atomic regions from SNP 252109 to 252709 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,300 DEBUG Processing 691/1127 atomic regions from SNP 207018 to 207618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,393 DEBUG Processing 729/1016 atomic regions from SNP 218504 to 219104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,412 DEBUG Processing 624/642 atomic regions from SNP 187066 to 187666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,439 DEBUG Processing 828/883 atomic regions from SNP 248373 to 248973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,456 DEBUG Processing 842/850 atomic regions from SNP 252409 to 253009 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,568 DEBUG Processing 692/1127 atomic regions from SNP 207318 to 207918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,665 DEBUG Processing 730/1016 atomic regions from SNP 218804 to 219404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,669 DEBUG Processing 625/642 atomic regions from SNP 187366 to 187966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,692 DEBUG Processing 829/883 atomic regions from SNP 248673 to 249273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,723 DEBUG Processing 843/850 atomic regions from SNP 252709 to 253309 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:51,839 DEBUG Processing 693/1127 atomic regions from SNP 207618 to 208218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:51,923 DEBUG Processing 626/642 atomic regions from SNP 187666 to 188266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:51,933 DEBUG Processing 731/1016 atomic regions from SNP 219104 to 219704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:51,947 DEBUG Processing 830/883 atomic regions from SNP 248973 to 249573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:51,983 DEBUG Processing 844/850 atomic regions from SNP 253009 to 253609 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,123 DEBUG Processing 694/1127 atomic regions from SNP 207918 to 208518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,183 DEBUG Processing 627/642 atomic regions from SNP 187966 to 188566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,211 DEBUG Processing 831/883 atomic regions from SNP 249273 to 249873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,212 DEBUG Processing 732/1016 atomic regions from SNP 219404 to 220004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,245 DEBUG Processing 845/850 atomic regions from SNP 253309 to 253909 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,406 DEBUG Processing 695/1127 atomic regions from SNP 208218 to 208818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,434 DEBUG Processing 628/642 atomic regions from SNP 188266 to 188866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,465 DEBUG Processing 832/883 atomic regions from SNP 249573 to 250173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,489 DEBUG Processing 733/1016 atomic regions from SNP 219704 to 220304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,489 DEBUG Processing 846/850 atomic regions from SNP 253609 to 254209 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,688 DEBUG Processing 696/1127 atomic regions from SNP 208518 to 209118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,717 DEBUG Processing 629/642 atomic regions from SNP 188566 to 189166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:52,729 DEBUG Processing 833/883 atomic regions from SNP 249873 to 250473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:52,741 DEBUG Processing 847/850 atomic regions from SNP 253909 to 254509 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:52,784 DEBUG Processing 734/1016 atomic regions from SNP 220004 to 220604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:52,969 DEBUG Processing 697/1127 atomic regions from SNP 208818 to 209418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:52,997 DEBUG Processing 834/883 atomic regions from SNP 250173 to 250773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,002 DEBUG Processing 848/850 atomic regions from SNP 254209 to 254809 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,020 DEBUG Processing 630/642 atomic regions from SNP 188866 to 189466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,065 DEBUG Processing 735/1016 atomic regions from SNP 220304 to 220904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,246 DEBUG Processing 698/1127 atomic regions from SNP 209118 to 209718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,259 DEBUG Processing 835/883 atomic regions from SNP 250473 to 251073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,261 DEBUG Processing 849/850 atomic regions from SNP 254509 to 255109 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,307 DEBUG Processing 631/642 atomic regions from SNP 189166 to 189766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,340 DEBUG Processing 736/1016 atomic regions from SNP 220604 to 221204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,514 DEBUG Processing 836/883 atomic regions from SNP 250773 to 251373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,525 DEBUG Processing 699/1127 atomic regions from SNP 209418 to 210018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,538 DEBUG Processing 850/850 atomic regions from SNP 254809 to 255409 for chr5 (subchromosome 1 of 1). 2025-01-31 09:46:53,578 DEBUG Processing 632/642 atomic regions from SNP 189466 to 190066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,629 DEBUG Processing 737/1016 atomic regions from SNP 220904 to 221504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:53,689 DEBUG Unique SNPs positions in subchromosome 1: 255410 2025-01-31 09:46:53,766 DEBUG Processing 837/883 atomic regions from SNP 251073 to 251673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:53,806 DEBUG Processing 700/1127 atomic regions from SNP 209718 to 210318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:53,852 DEBUG Processing 633/642 atomic regions from SNP 189766 to 190366 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:53,923 DEBUG Processing 738/1016 atomic regions from SNP 221204 to 221804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,011 DEBUG Processing 838/883 atomic regions from SNP 251373 to 251973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,084 DEBUG Processing 701/1127 atomic regions from SNP 210018 to 210618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,111 DEBUG Processing 634/642 atomic regions from SNP 190066 to 190666 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,217 DEBUG Processing 739/1016 atomic regions from SNP 221504 to 222104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,266 DEBUG Processing 839/883 atomic regions from SNP 251673 to 252273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,363 DEBUG Processing 702/1127 atomic regions from SNP 210318 to 210918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,385 DEBUG Processing 635/642 atomic regions from SNP 190366 to 190966 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,505 DEBUG Processing 740/1016 atomic regions from SNP 221804 to 222404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,521 DEBUG Processing 840/883 atomic regions from SNP 251973 to 252573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,642 DEBUG Processing 703/1127 atomic regions from SNP 210618 to 211218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,672 DEBUG Processing 636/642 atomic regions from SNP 190666 to 191266 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:54,776 DEBUG Processing 741/1016 atomic regions from SNP 222104 to 222704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:54,778 DEBUG Processing 841/883 atomic regions from SNP 252273 to 252873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:54,919 DEBUG Processing 704/1127 atomic regions from SNP 210918 to 211518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:54,938 DEBUG Processing 637/642 atomic regions from SNP 190966 to 191566 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,034 DEBUG Processing 842/883 atomic regions from SNP 252573 to 253173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,048 DEBUG Processing 742/1016 atomic regions from SNP 222404 to 223004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,195 DEBUG Processing 638/642 atomic regions from SNP 191266 to 191866 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,201 DEBUG Processing 705/1127 atomic regions from SNP 211218 to 211818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,288 DEBUG Processing 843/883 atomic regions from SNP 252873 to 253473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,314 DEBUG Processing 743/1016 atomic regions from SNP 222704 to 223304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,470 DEBUG Processing 639/642 atomic regions from SNP 191566 to 192166 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,478 DEBUG Processing 706/1127 atomic regions from SNP 211518 to 212118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,535 DEBUG Processing 844/883 atomic regions from SNP 253173 to 253773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,579 DEBUG Processing 744/1016 atomic regions from SNP 223004 to 223604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:55,757 DEBUG Processing 640/642 atomic regions from SNP 191866 to 192466 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:55,762 DEBUG Processing 707/1127 atomic regions from SNP 211818 to 212418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:55,787 DEBUG Processing 845/883 atomic regions from SNP 253473 to 254073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:55,855 DEBUG Processing 745/1016 atomic regions from SNP 223304 to 223904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,046 DEBUG Processing 846/883 atomic regions from SNP 253773 to 254373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,047 DEBUG Processing 708/1127 atomic regions from SNP 212118 to 212718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,048 DEBUG Processing 641/642 atomic regions from SNP 192166 to 192766 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,147 DEBUG Processing 746/1016 atomic regions from SNP 223604 to 224204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,309 DEBUG Processing 847/883 atomic regions from SNP 254073 to 254673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,339 DEBUG Processing 709/1127 atomic regions from SNP 212418 to 213018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,341 DEBUG Processing 642/642 atomic regions from SNP 192466 to 193066 for chr4 (subchromosome 2 of 2). 2025-01-31 09:46:56,446 DEBUG Processing 747/1016 atomic regions from SNP 223904 to 224504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,495 DEBUG Unique SNPs positions in subchromosome 2: 193067 2025-01-31 09:46:56,570 DEBUG Processing 848/883 atomic regions from SNP 254373 to 254973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,621 DEBUG Processing 710/1127 atomic regions from SNP 212718 to 213318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:56,756 DEBUG Processing 748/1016 atomic regions from SNP 224204 to 224804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:56,836 DEBUG Processing 849/883 atomic regions from SNP 254673 to 255273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:56,900 DEBUG Processing 711/1127 atomic regions from SNP 213018 to 213618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,049 DEBUG Processing 749/1016 atomic regions from SNP 224504 to 225104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,095 DEBUG Processing 850/883 atomic regions from SNP 254973 to 255573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,177 DEBUG Processing 712/1127 atomic regions from SNP 213318 to 213918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,358 DEBUG Processing 750/1016 atomic regions from SNP 224804 to 225404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,364 DEBUG Processing 851/883 atomic regions from SNP 255273 to 255873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,456 DEBUG Processing 713/1127 atomic regions from SNP 213618 to 214218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,620 DEBUG Processing 852/883 atomic regions from SNP 255573 to 256173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,664 DEBUG Processing 751/1016 atomic regions from SNP 225104 to 225704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:57,731 DEBUG Processing 714/1127 atomic regions from SNP 213918 to 214518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:57,874 DEBUG Processing 853/883 atomic regions from SNP 255873 to 256473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:57,966 DEBUG Processing 752/1016 atomic regions from SNP 225404 to 226004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,010 DEBUG Processing 715/1127 atomic regions from SNP 214218 to 214818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,125 DEBUG Processing 854/883 atomic regions from SNP 256173 to 256773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,243 DEBUG Processing 753/1016 atomic regions from SNP 225704 to 226304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,292 DEBUG Processing 716/1127 atomic regions from SNP 214518 to 215118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,372 DEBUG Processing 855/883 atomic regions from SNP 256473 to 257073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,514 DEBUG Processing 754/1016 atomic regions from SNP 226004 to 226604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,575 DEBUG Processing 717/1127 atomic regions from SNP 214818 to 215418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,620 DEBUG Processing 856/883 atomic regions from SNP 256773 to 257373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:58,785 DEBUG Processing 755/1016 atomic regions from SNP 226304 to 226904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:58,860 DEBUG Processing 718/1127 atomic regions from SNP 215118 to 215718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:58,869 DEBUG Processing 857/883 atomic regions from SNP 257073 to 257673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,067 DEBUG Processing 756/1016 atomic regions from SNP 226604 to 227204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,125 DEBUG Processing 858/883 atomic regions from SNP 257373 to 257973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,151 DEBUG Processing 719/1127 atomic regions from SNP 215418 to 216018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,346 DEBUG Processing 757/1016 atomic regions from SNP 226904 to 227504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,385 DEBUG Processing 859/883 atomic regions from SNP 257673 to 258273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,444 DEBUG Processing 720/1127 atomic regions from SNP 215718 to 216318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,646 DEBUG Processing 860/883 atomic regions from SNP 257973 to 258573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,655 DEBUG Processing 758/1016 atomic regions from SNP 227204 to 227804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:46:59,741 DEBUG Processing 721/1127 atomic regions from SNP 216018 to 216618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:46:59,901 DEBUG Processing 861/883 atomic regions from SNP 258273 to 258873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:46:59,947 DEBUG Processing 759/1016 atomic regions from SNP 227504 to 228104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,028 DEBUG Processing 722/1127 atomic regions from SNP 216318 to 216918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,151 DEBUG Processing 862/883 atomic regions from SNP 258573 to 259173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,230 DEBUG Processing 760/1016 atomic regions from SNP 227804 to 228404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,319 DEBUG Processing 723/1127 atomic regions from SNP 216618 to 217218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,401 DEBUG Processing 863/883 atomic regions from SNP 258873 to 259473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,515 DEBUG Processing 761/1016 atomic regions from SNP 228104 to 228704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,616 DEBUG Processing 724/1127 atomic regions from SNP 216918 to 217518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:00,653 DEBUG Processing 864/883 atomic regions from SNP 259173 to 259773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,790 DEBUG Processing 762/1016 atomic regions from SNP 228404 to 229004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:00,915 DEBUG Processing 865/883 atomic regions from SNP 259473 to 260073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:00,939 DEBUG Processing 725/1127 atomic regions from SNP 217218 to 217818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,062 DEBUG Processing 763/1016 atomic regions from SNP 228704 to 229304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,173 DEBUG Processing 866/883 atomic regions from SNP 259773 to 260373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,266 DEBUG Processing 726/1127 atomic regions from SNP 217518 to 218118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,334 DEBUG Processing 764/1016 atomic regions from SNP 229004 to 229604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,423 DEBUG Processing 867/883 atomic regions from SNP 260073 to 260673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,589 DEBUG Processing 727/1127 atomic regions from SNP 217818 to 218418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,609 DEBUG Processing 765/1016 atomic regions from SNP 229304 to 229904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,672 DEBUG Processing 868/883 atomic regions from SNP 260373 to 260973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:01,889 DEBUG Processing 766/1016 atomic regions from SNP 229604 to 230204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:01,891 DEBUG Processing 728/1127 atomic regions from SNP 218118 to 218718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:01,923 DEBUG Processing 869/883 atomic regions from SNP 260673 to 261273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,167 DEBUG Processing 767/1016 atomic regions from SNP 229904 to 230504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,176 DEBUG Processing 870/883 atomic regions from SNP 260973 to 261573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,177 DEBUG Processing 729/1127 atomic regions from SNP 218418 to 219018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,435 DEBUG Processing 871/883 atomic regions from SNP 261273 to 261873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,448 DEBUG Processing 768/1016 atomic regions from SNP 230204 to 230804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,462 DEBUG Processing 730/1127 atomic regions from SNP 218718 to 219318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,688 DEBUG Processing 872/883 atomic regions from SNP 261573 to 262173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,723 DEBUG Processing 769/1016 atomic regions from SNP 230504 to 231104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:02,747 DEBUG Processing 731/1127 atomic regions from SNP 219018 to 219618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:02,942 DEBUG Processing 873/883 atomic regions from SNP 261873 to 262473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:02,991 DEBUG Processing 770/1016 atomic regions from SNP 230804 to 231404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,028 DEBUG Processing 732/1127 atomic regions from SNP 219318 to 219918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,196 DEBUG Processing 874/883 atomic regions from SNP 262173 to 262773 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,264 DEBUG Processing 771/1016 atomic regions from SNP 231104 to 231704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,318 DEBUG Processing 733/1127 atomic regions from SNP 219618 to 220218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,454 DEBUG Processing 875/883 atomic regions from SNP 262473 to 263073 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,538 DEBUG Processing 772/1016 atomic regions from SNP 231404 to 232004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,612 DEBUG Processing 734/1127 atomic regions from SNP 219918 to 220518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,712 DEBUG Processing 876/883 atomic regions from SNP 262773 to 263373 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:03,815 DEBUG Processing 773/1016 atomic regions from SNP 231704 to 232304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:03,903 DEBUG Processing 735/1127 atomic regions from SNP 220218 to 220818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:03,971 DEBUG Processing 877/883 atomic regions from SNP 263073 to 263673 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,091 DEBUG Processing 774/1016 atomic regions from SNP 232004 to 232604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,195 DEBUG Processing 736/1127 atomic regions from SNP 220518 to 221118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,221 DEBUG Processing 878/883 atomic regions from SNP 263373 to 263973 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,366 DEBUG Processing 775/1016 atomic regions from SNP 232304 to 232904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,461 DEBUG Processing 879/883 atomic regions from SNP 263673 to 264273 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,479 DEBUG Processing 737/1127 atomic regions from SNP 220818 to 221418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,642 DEBUG Processing 776/1016 atomic regions from SNP 232604 to 233204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,718 DEBUG Processing 880/883 atomic regions from SNP 263973 to 264573 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:04,765 DEBUG Processing 738/1127 atomic regions from SNP 221118 to 221718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:04,917 DEBUG Processing 777/1016 atomic regions from SNP 232904 to 233504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:04,968 DEBUG Processing 881/883 atomic regions from SNP 264273 to 264873 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,048 DEBUG Processing 739/1127 atomic regions from SNP 221418 to 222018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,193 DEBUG Processing 778/1016 atomic regions from SNP 233204 to 233804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,223 DEBUG Processing 882/883 atomic regions from SNP 264573 to 265173 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,334 DEBUG Processing 740/1127 atomic regions from SNP 221718 to 222318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,471 DEBUG Processing 779/1016 atomic regions from SNP 233504 to 234104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,486 DEBUG Processing 883/883 atomic regions from SNP 264873 to 265473 for chr3 (subchromosome 1 of 1). 2025-01-31 09:47:05,631 DEBUG Unique SNPs positions in subchromosome 1: 265474 2025-01-31 09:47:05,639 DEBUG Processing 741/1127 atomic regions from SNP 222018 to 222618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:05,753 DEBUG Processing 780/1016 atomic regions from SNP 233804 to 234404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:05,915 DEBUG Processing 742/1127 atomic regions from SNP 222318 to 222918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,033 DEBUG Processing 781/1016 atomic regions from SNP 234104 to 234704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,229 DEBUG Processing 743/1127 atomic regions from SNP 222618 to 223218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,307 DEBUG Processing 782/1016 atomic regions from SNP 234404 to 235004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,539 DEBUG Processing 744/1127 atomic regions from SNP 222918 to 223518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,583 DEBUG Processing 783/1016 atomic regions from SNP 234704 to 235304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:06,832 DEBUG Processing 745/1127 atomic regions from SNP 223218 to 223818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:06,857 DEBUG Processing 784/1016 atomic regions from SNP 235004 to 235604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,132 DEBUG Processing 785/1016 atomic regions from SNP 235304 to 235904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,141 DEBUG Processing 746/1127 atomic regions from SNP 223518 to 224118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,413 DEBUG Processing 786/1016 atomic regions from SNP 235604 to 236204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,450 DEBUG Processing 747/1127 atomic regions from SNP 223818 to 224418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,700 DEBUG Processing 787/1016 atomic regions from SNP 235904 to 236504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:07,769 DEBUG Processing 748/1127 atomic regions from SNP 224118 to 224718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:07,977 DEBUG Processing 788/1016 atomic regions from SNP 236204 to 236804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,084 DEBUG Processing 749/1127 atomic regions from SNP 224418 to 225018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,252 DEBUG Processing 789/1016 atomic regions from SNP 236504 to 237104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,393 DEBUG Processing 750/1127 atomic regions from SNP 224718 to 225318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,530 DEBUG Processing 790/1016 atomic regions from SNP 236804 to 237404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:08,721 DEBUG Processing 751/1127 atomic regions from SNP 225018 to 225618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:08,806 DEBUG Processing 791/1016 atomic regions from SNP 237104 to 237704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,030 DEBUG Processing 752/1127 atomic regions from SNP 225318 to 225918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,088 DEBUG Processing 792/1016 atomic regions from SNP 237404 to 238004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,332 DEBUG Processing 753/1127 atomic regions from SNP 225618 to 226218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,377 DEBUG Processing 793/1016 atomic regions from SNP 237704 to 238304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,627 DEBUG Processing 754/1127 atomic regions from SNP 225918 to 226518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:09,658 DEBUG Processing 794/1016 atomic regions from SNP 238004 to 238604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,939 DEBUG Processing 795/1016 atomic regions from SNP 238304 to 238904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:09,946 DEBUG Processing 755/1127 atomic regions from SNP 226218 to 226818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,219 DEBUG Processing 796/1016 atomic regions from SNP 238604 to 239204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,265 DEBUG Processing 756/1127 atomic regions from SNP 226518 to 227118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,492 DEBUG Processing 797/1016 atomic regions from SNP 238904 to 239504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,568 DEBUG Processing 757/1127 atomic regions from SNP 226818 to 227418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:10,690 DEBUG Subchromosome time: 204.08329681493342, subchromosome SNPs: 193067 2025-01-31 09:47:10,691 DEBUG Estimated BADs: [1.95, 0.65, 1.95, 0.33, 0.98, 1.95, 0.49, 1.95, 0.65, 5.85, 5.85, 1.95, 0.49, 1.95, 0.49, 1.95, 0.28, 0.98, 1.95, 3.90, 0.39, 0.98, 5.85, 3.90, 9.76, 5.85, 1.95, 5.85] SNP counts: [6139, 2882, 13128, 4766, 4109, 1652, 16577, 3945, 8537, 3041, 8224, 4545, 5382, 16902, 27290, 15314, 4767, 7221, 17752, 6582, 5048, 1975, 10661, 18625, 8707, 10470, 7476, 16126] SNP IDs counts: [6139, 2882, 13128, 4766, 4109, 1652, 16577, 3945, 8537, 3041, 8224, 4545, 5382, 16902, 27290, 15314, 4767, 7221, 17752, 6582, 5048, 1975, 10661, 18625, 8707, 10470, 7476, 16126] Critical gap: 689776bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 6.89Mbp, 8.64Mbp, 16.17Mbp, 19.22Mbp, 21.71Mbp, 22.63Mbp, 32.66Mbp, 34.83Mbp, 40.13Mbp, 41.86Mbp[0.85Mbp], 47.17Mbp, 49.70Mbp, 52.98Mbp, 64.02Mbp, 80.98Mbp, 89.69Mbp, 92.74Mbp, 96.96Mbp, 106.74Mbp, 110.29Mbp, 113.75Mbp, 114.99Mbp, 120.85Mbp, 131.71Mbp, 136.28Mbp, 141.75Mbp, 147.85Mbp, 156.51Mbp] 2025-01-31 09:47:10,691 DEBUG chr4 time: 204.0838036199566 s 2025-01-31 09:47:10,762 DEBUG Processing 798/1016 atomic regions from SNP 239204 to 239804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:10,852 DEBUG chr4: Fitting background model for 28 segments 2025-01-31 09:47:10,867 DEBUG Processing 758/1127 atomic regions from SNP 227118 to 227718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,038 DEBUG Processing 799/1016 atomic regions from SNP 239504 to 240104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,163 DEBUG Processing 759/1127 atomic regions from SNP 227418 to 228018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,309 DEBUG Processing 800/1016 atomic regions from SNP 239804 to 240404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,484 DEBUG Processing 760/1127 atomic regions from SNP 227718 to 228318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,574 DEBUG Processing 801/1016 atomic regions from SNP 240104 to 240704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:11,806 DEBUG Processing 761/1127 atomic regions from SNP 228018 to 228618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:11,848 DEBUG Processing 802/1016 atomic regions from SNP 240404 to 241004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,125 DEBUG Processing 803/1016 atomic regions from SNP 240704 to 241304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,128 DEBUG Processing 762/1127 atomic regions from SNP 228318 to 228918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,400 DEBUG Processing 804/1016 atomic regions from SNP 241004 to 241604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,443 DEBUG Processing 763/1127 atomic regions from SNP 228618 to 229218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,470 DEBUG chr6: Estimating proportion of background vs signal 2025-01-31 09:47:12,678 DEBUG Processing 805/1016 atomic regions from SNP 241304 to 241904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:12,764 DEBUG Processing 764/1127 atomic regions from SNP 228918 to 229518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:12,956 DEBUG Processing 806/1016 atomic regions from SNP 241604 to 242204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,090 DEBUG Processing 765/1127 atomic regions from SNP 229218 to 229818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,228 DEBUG Processing 807/1016 atomic regions from SNP 241904 to 242504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,398 DEBUG Processing 766/1127 atomic regions from SNP 229518 to 230118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,513 DEBUG Processing 808/1016 atomic regions from SNP 242204 to 242804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,685 DEBUG Processing 767/1127 atomic regions from SNP 229818 to 230418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:13,798 DEBUG Processing 809/1016 atomic regions from SNP 242504 to 243104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:13,987 DEBUG Processing 768/1127 atomic regions from SNP 230118 to 230718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,087 DEBUG Processing 810/1016 atomic regions from SNP 242804 to 243404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,294 DEBUG Processing 769/1127 atomic regions from SNP 230418 to 231018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,375 DEBUG Processing 811/1016 atomic regions from SNP 243104 to 243704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,583 DEBUG Processing 770/1127 atomic regions from SNP 230718 to 231318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,662 DEBUG Processing 812/1016 atomic regions from SNP 243404 to 244004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:14,867 DEBUG Processing 771/1127 atomic regions from SNP 231018 to 231618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:14,948 DEBUG Processing 813/1016 atomic regions from SNP 243704 to 244304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,172 DEBUG Processing 772/1127 atomic regions from SNP 231318 to 231918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,237 DEBUG Processing 814/1016 atomic regions from SNP 244004 to 244604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,491 DEBUG Processing 773/1127 atomic regions from SNP 231618 to 232218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:15,521 DEBUG Processing 815/1016 atomic regions from SNP 244304 to 244904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,814 DEBUG Processing 816/1016 atomic regions from SNP 244604 to 245204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:15,819 DEBUG Processing 774/1127 atomic regions from SNP 231918 to 232518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,093 DEBUG Processing 817/1016 atomic regions from SNP 244904 to 245504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,132 DEBUG Processing 775/1127 atomic regions from SNP 232218 to 232818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,382 DEBUG Processing 818/1016 atomic regions from SNP 245204 to 245804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,435 DEBUG Processing 776/1127 atomic regions from SNP 232518 to 233118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,641 DEBUG Processing 819/1016 atomic regions from SNP 245504 to 246104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:16,752 DEBUG Processing 777/1127 atomic regions from SNP 232818 to 233418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:16,903 DEBUG Processing 820/1016 atomic regions from SNP 245804 to 246404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,055 DEBUG Processing 778/1127 atomic regions from SNP 233118 to 233718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,163 DEBUG Processing 821/1016 atomic regions from SNP 246104 to 246704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,353 DEBUG Processing 779/1127 atomic regions from SNP 233418 to 234018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,434 DEBUG Processing 822/1016 atomic regions from SNP 246404 to 247004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,643 DEBUG Processing 780/1127 atomic regions from SNP 233718 to 234318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,702 DEBUG Processing 823/1016 atomic regions from SNP 246704 to 247304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:17,931 DEBUG Processing 781/1127 atomic regions from SNP 234018 to 234618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:17,976 DEBUG Processing 824/1016 atomic regions from SNP 247004 to 247604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,217 DEBUG Processing 782/1127 atomic regions from SNP 234318 to 234918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,244 DEBUG Processing 825/1016 atomic regions from SNP 247304 to 247904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,494 DEBUG Processing 783/1127 atomic regions from SNP 234618 to 235218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,506 DEBUG Processing 826/1016 atomic regions from SNP 247604 to 248204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:18,773 DEBUG Processing 784/1127 atomic regions from SNP 234918 to 235518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:18,791 DEBUG Processing 827/1016 atomic regions from SNP 247904 to 248504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,057 DEBUG Processing 785/1127 atomic regions from SNP 235218 to 235818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,088 DEBUG Processing 828/1016 atomic regions from SNP 248204 to 248804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,341 DEBUG Processing 786/1127 atomic regions from SNP 235518 to 236118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,368 DEBUG Processing 829/1016 atomic regions from SNP 248504 to 249104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,630 DEBUG Processing 787/1127 atomic regions from SNP 235818 to 236418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,652 DEBUG Processing 830/1016 atomic regions from SNP 248804 to 249404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:19,918 DEBUG Processing 788/1127 atomic regions from SNP 236118 to 236718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:19,929 DEBUG Processing 831/1016 atomic regions from SNP 249104 to 249704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,202 DEBUG Processing 832/1016 atomic regions from SNP 249404 to 250004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,203 DEBUG Processing 789/1127 atomic regions from SNP 236418 to 237018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,475 DEBUG Processing 833/1016 atomic regions from SNP 249704 to 250304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,486 DEBUG Processing 790/1127 atomic regions from SNP 236718 to 237318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:20,748 DEBUG Processing 834/1016 atomic regions from SNP 250004 to 250604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:20,769 DEBUG Processing 791/1127 atomic regions from SNP 237018 to 237618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,022 DEBUG Processing 835/1016 atomic regions from SNP 250304 to 250904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,066 DEBUG Processing 792/1127 atomic regions from SNP 237318 to 237918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,291 DEBUG Processing 836/1016 atomic regions from SNP 250604 to 251204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,352 DEBUG Processing 793/1127 atomic regions from SNP 237618 to 238218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,554 DEBUG Processing 837/1016 atomic regions from SNP 250904 to 251504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,629 DEBUG Processing 794/1127 atomic regions from SNP 237918 to 238518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:21,811 DEBUG Processing 838/1016 atomic regions from SNP 251204 to 251804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:21,905 DEBUG Processing 795/1127 atomic regions from SNP 238218 to 238818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,072 DEBUG Processing 839/1016 atomic regions from SNP 251504 to 252104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,183 DEBUG Processing 796/1127 atomic regions from SNP 238518 to 239118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,337 DEBUG Processing 840/1016 atomic regions from SNP 251804 to 252404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,456 DEBUG Processing 797/1127 atomic regions from SNP 238818 to 239418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,607 DEBUG Processing 841/1016 atomic regions from SNP 252104 to 252704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:22,637 DEBUG Subchromosome time: 275.691681582015, subchromosome SNPs: 255410 2025-01-31 09:47:22,638 DEBUG Estimated BADs: [1.83, 0.46, 1.83, 5.49, 1.83, 10.97, 3.66, 0.46, 1.83, 0.46, 1.83, 0.26, 1.83, 0.30, 1.83, 0.26, 0.61, 1.83, 14.63, 3.66, 7.31, 3.66, 7.31, 1.83, 10.97, 0.91, 5.49, 0.91, 3.66] SNP counts: [4911, 22119, 4467, 3989, 8517, 1381, 14501, 6012, 5708, 8679, 6339, 14051, 9298, 5132, 11398, 9302, 7922, 23248, 336, 17716, 3584, 8546, 10045, 7954, 757, 7376, 20492, 1440, 10190] SNP IDs counts: [4911, 22119, 4467, 3989, 8517, 1381, 14501, 6012, 5708, 8679, 6339, 14051, 9298, 5132, 11398, 9302, 7922, 23248, 336, 17716, 3584, 8546, 10045, 7954, 757, 7376, 20492, 1440, 10190] Critical gap: 676102bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.90Mbp, 20.87Mbp, 23.40Mbp, 25.55Mbp, 30.52Mbp, 31.24Mbp, 39.06Mbp, 42.67Mbp, 45.94Mbp, 51.01Mbp, 54.43Mbp, 63.39Mbp, 68.47Mbp, 71.70Mbp, 77.91Mbp, 83.76Mbp, 88.53Mbp, 103.65Mbp, 103.83Mbp, 113.73Mbp, 115.60Mbp, 120.08Mbp, 125.43Mbp, 129.72Mbp, 130.17Mbp, 134.14Mbp, 145.24Mbp, 146.22Mbp, 151.83Mbp] 2025-01-31 09:47:22,638 DEBUG chr5 time: 275.6922996659996 s 2025-01-31 09:47:22,728 DEBUG Processing 798/1127 atomic regions from SNP 239118 to 239718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:22,792 DEBUG chr5: Fitting background model for 29 segments 2025-01-31 09:47:22,874 DEBUG Processing 842/1016 atomic regions from SNP 252404 to 253004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,000 DEBUG Processing 799/1127 atomic regions from SNP 239418 to 240018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,141 DEBUG Processing 843/1016 atomic regions from SNP 252704 to 253304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,273 DEBUG Processing 800/1127 atomic regions from SNP 239718 to 240318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,409 DEBUG Processing 844/1016 atomic regions from SNP 253004 to 253604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,550 DEBUG Processing 801/1127 atomic regions from SNP 240018 to 240618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,673 DEBUG Processing 845/1016 atomic regions from SNP 253304 to 253904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:23,821 DEBUG Processing 802/1127 atomic regions from SNP 240318 to 240918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:23,942 DEBUG Processing 846/1016 atomic regions from SNP 253604 to 254204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,101 DEBUG Processing 803/1127 atomic regions from SNP 240618 to 241218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,213 DEBUG Processing 847/1016 atomic regions from SNP 253904 to 254504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,376 DEBUG Processing 804/1127 atomic regions from SNP 240918 to 241518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,483 DEBUG Processing 848/1016 atomic regions from SNP 254204 to 254804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,654 DEBUG Processing 805/1127 atomic regions from SNP 241218 to 241818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:24,751 DEBUG Processing 849/1016 atomic regions from SNP 254504 to 255104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:24,927 DEBUG Processing 806/1127 atomic regions from SNP 241518 to 242118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,021 DEBUG Processing 850/1016 atomic regions from SNP 254804 to 255404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,197 DEBUG Processing 807/1127 atomic regions from SNP 241818 to 242418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,295 DEBUG Processing 851/1016 atomic regions from SNP 255104 to 255704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,464 DEBUG Processing 808/1127 atomic regions from SNP 242118 to 242718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,568 DEBUG Processing 852/1016 atomic regions from SNP 255404 to 256004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,729 DEBUG Processing 809/1127 atomic regions from SNP 242418 to 243018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:25,849 DEBUG Processing 853/1016 atomic regions from SNP 255704 to 256304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:25,995 DEBUG Processing 810/1127 atomic regions from SNP 242718 to 243318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,116 DEBUG Processing 854/1016 atomic regions from SNP 256004 to 256604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,264 DEBUG Processing 811/1127 atomic regions from SNP 243018 to 243618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,332 DEBUG Subchromosome time: 280.93245800805744, subchromosome SNPs: 265474 2025-01-31 09:47:26,332 DEBUG Estimated BADs: [0.68, 4.05, 1.01, 4.05, 1.01, 2.03, 0.29, 2.03, 0.68, 4.05, 20.25, 2.03, 0.68, 2.03, 6.08, 16.20, 2.03, 20.25, 6.08, 18.23, 4.05, 0.68, 4.05, 1.01, 4.05, 1.01, 4.05, 2.03, 0.25, 2.03, 0.29, 2.03, 0.68] SNP counts: [9365, 2469, 13832, 1532, 13836, 17434, 3027, 2990, 12100, 872, 886, 33304, 14009, 8028, 6922, 4959, 6053, 4167, 20384, 973, 3273, 7158, 4495, 5101, 7498, 1792, 21030, 3675, 4104, 8729, 7766, 5405, 8306] SNP IDs counts: [9365, 2469, 13832, 1532, 13836, 17434, 3027, 2990, 12100, 872, 886, 33304, 14009, 8028, 6922, 4959, 6053, 4167, 20384, 973, 3273, 7158, 4495, 5101, 7498, 1792, 21030, 3675, 4104, 8729, 7766, 5405, 8306] Critical gap: 699786bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 8.90Mbp, 10.27Mbp, 19.16Mbp, 20.02Mbp, 28.30Mbp, 38.14Mbp, 40.05Mbp, 41.83Mbp, 50.66Mbp, 51.19Mbp, 51.66Mbp, 70.88Mbp, 79.45Mbp, 84.01Mbp, 87.72Mbp, 90.39Mbp, 94.44Mbp, 96.76Mbp, 108.04Mbp, 108.55Mbp, 110.38Mbp, 114.96Mbp, 117.45Mbp, 120.29Mbp, 124.39Mbp, 125.41Mbp, 137.10Mbp, 139.17Mbp, 142.08Mbp, 146.94Mbp, 151.76Mbp, 154.71Mbp, 160.04Mbp] 2025-01-31 09:47:26,332 DEBUG chr3 time: 280.93307734199334 s 2025-01-31 09:47:26,383 DEBUG Processing 855/1016 atomic regions from SNP 256304 to 256904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,479 DEBUG chr3: Fitting background model for 33 segments 2025-01-31 09:47:26,538 DEBUG Processing 812/1127 atomic regions from SNP 243318 to 243918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,653 DEBUG Processing 856/1016 atomic regions from SNP 256604 to 257204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:26,815 DEBUG Processing 813/1127 atomic regions from SNP 243618 to 244218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:26,928 DEBUG Processing 857/1016 atomic regions from SNP 256904 to 257504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,095 DEBUG Processing 814/1127 atomic regions from SNP 243918 to 244518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,199 DEBUG Processing 858/1016 atomic regions from SNP 257204 to 257804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,377 DEBUG Processing 815/1127 atomic regions from SNP 244218 to 244818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,468 DEBUG Processing 859/1016 atomic regions from SNP 257504 to 258104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,661 DEBUG Processing 816/1127 atomic regions from SNP 244518 to 245118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:27,737 DEBUG Processing 860/1016 atomic regions from SNP 257804 to 258404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:27,936 DEBUG Processing 817/1127 atomic regions from SNP 244818 to 245418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,002 DEBUG Processing 861/1016 atomic regions from SNP 258104 to 258704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,229 DEBUG Processing 818/1127 atomic regions from SNP 245118 to 245718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,271 DEBUG Processing 862/1016 atomic regions from SNP 258404 to 259004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,515 DEBUG Processing 819/1127 atomic regions from SNP 245418 to 246018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,539 DEBUG Processing 863/1016 atomic regions from SNP 258704 to 259304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:28,793 DEBUG Processing 820/1127 atomic regions from SNP 245718 to 246318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:28,813 DEBUG Processing 864/1016 atomic regions from SNP 259004 to 259604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,077 DEBUG Processing 821/1127 atomic regions from SNP 246018 to 246618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,088 DEBUG Processing 865/1016 atomic regions from SNP 259304 to 259904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,361 DEBUG Processing 822/1127 atomic regions from SNP 246318 to 246918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,364 DEBUG Processing 866/1016 atomic regions from SNP 259604 to 260204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,648 DEBUG Processing 867/1016 atomic regions from SNP 259904 to 260504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,654 DEBUG Processing 823/1127 atomic regions from SNP 246618 to 247218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:29,932 DEBUG Processing 868/1016 atomic regions from SNP 260204 to 260804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:29,944 DEBUG Processing 824/1127 atomic regions from SNP 246918 to 247518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,104 DEBUG chr6:0-149736546: Signal thresholds approximated 2025-01-31 09:47:30,106 DEBUG chr6: Signal quantile: 0.992. signal threshold: 13. Best RMSEA: 0.018 2025-01-31 09:47:30,236 DEBUG Processing 825/1127 atomic regions from SNP 247218 to 247818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,245 DEBUG Processing 869/1016 atomic regions from SNP 260504 to 261104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,521 DEBUG Processing 826/1127 atomic regions from SNP 247518 to 248118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:30,526 DEBUG Processing 870/1016 atomic regions from SNP 260804 to 261404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,803 DEBUG Processing 871/1016 atomic regions from SNP 261104 to 261704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:30,805 DEBUG Processing 827/1127 atomic regions from SNP 247818 to 248418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,095 DEBUG Processing 872/1016 atomic regions from SNP 261404 to 262004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,099 DEBUG Processing 828/1127 atomic regions from SNP 248118 to 248718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,389 DEBUG Processing 873/1016 atomic regions from SNP 261704 to 262304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,392 DEBUG Processing 829/1127 atomic regions from SNP 248418 to 249018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,679 DEBUG Processing 830/1127 atomic regions from SNP 248718 to 249318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,685 DEBUG Processing 874/1016 atomic regions from SNP 262004 to 262604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:31,964 DEBUG Processing 831/1127 atomic regions from SNP 249018 to 249618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:31,979 DEBUG Processing 875/1016 atomic regions from SNP 262304 to 262904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,250 DEBUG Processing 832/1127 atomic regions from SNP 249318 to 249918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,282 DEBUG Processing 876/1016 atomic regions from SNP 262604 to 263204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,533 DEBUG Processing 833/1127 atomic regions from SNP 249618 to 250218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,583 DEBUG Processing 877/1016 atomic regions from SNP 262904 to 263504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,812 DEBUG Processing 834/1127 atomic regions from SNP 249918 to 250518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:32,876 DEBUG Processing 878/1016 atomic regions from SNP 263204 to 263804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:32,948 DEBUG chr6 total SNP count: 254595 2025-01-31 09:47:32,948 DEBUG chr6 length: 149736546 2025-01-31 09:47:32,948 DEBUG ----------------------------------------- 2025-01-31 09:47:32,948 INFO Processing SNPs in chr6 2025-01-31 09:47:33,093 DEBUG Processing 835/1127 atomic regions from SNP 250218 to 250818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,184 DEBUG Processing 879/1016 atomic regions from SNP 263504 to 264104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,226 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 254595)] 2025-01-31 09:47:33,366 DEBUG Processing 836/1127 atomic regions from SNP 250518 to 251118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,410 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:47:33,473 DEBUG Processing 880/1016 atomic regions from SNP 263804 to 264404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,645 DEBUG Processing 837/1127 atomic regions from SNP 250818 to 251418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:33,749 DEBUG Processing 881/1016 atomic regions from SNP 264104 to 264704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:33,924 DEBUG Processing 838/1127 atomic regions from SNP 251118 to 251718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,035 DEBUG Processing 882/1016 atomic regions from SNP 264404 to 265004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,210 DEBUG Processing 839/1127 atomic regions from SNP 251418 to 252018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,324 DEBUG Processing 883/1016 atomic regions from SNP 264704 to 265304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,496 DEBUG Processing 840/1127 atomic regions from SNP 251718 to 252318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,619 DEBUG Processing 884/1016 atomic regions from SNP 265004 to 265604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:34,778 DEBUG Processing 841/1127 atomic regions from SNP 252018 to 252618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:34,903 DEBUG Processing 885/1016 atomic regions from SNP 265304 to 265904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,052 DEBUG Processing 842/1127 atomic regions from SNP 252318 to 252918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,177 DEBUG Processing 886/1016 atomic regions from SNP 265604 to 266204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,331 DEBUG Processing 843/1127 atomic regions from SNP 252618 to 253218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,451 DEBUG Processing 887/1016 atomic regions from SNP 265904 to 266504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,611 DEBUG Processing 844/1127 atomic regions from SNP 252918 to 253518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:35,725 DEBUG Processing 888/1016 atomic regions from SNP 266204 to 266804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:35,891 DEBUG Processing 845/1127 atomic regions from SNP 253218 to 253818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,014 DEBUG Processing 889/1016 atomic regions from SNP 266504 to 267104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,167 DEBUG Processing 846/1127 atomic regions from SNP 253518 to 254118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,307 DEBUG Processing 890/1016 atomic regions from SNP 266804 to 267404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,441 DEBUG Processing 847/1127 atomic regions from SNP 253818 to 254418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,605 DEBUG Processing 891/1016 atomic regions from SNP 267104 to 267704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:36,723 DEBUG Processing 848/1127 atomic regions from SNP 254118 to 254718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:36,889 DEBUG Processing 892/1016 atomic regions from SNP 267404 to 268004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,007 DEBUG Processing 849/1127 atomic regions from SNP 254418 to 255018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,169 DEBUG Processing 893/1016 atomic regions from SNP 267704 to 268304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,287 DEBUG Processing 850/1127 atomic regions from SNP 254718 to 255318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,441 DEBUG Processing 894/1016 atomic regions from SNP 268004 to 268604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,571 DEBUG Processing 851/1127 atomic regions from SNP 255018 to 255618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,711 DEBUG Processing 895/1016 atomic regions from SNP 268304 to 268904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:37,858 DEBUG Processing 852/1127 atomic regions from SNP 255318 to 255918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:37,992 DEBUG Processing 896/1016 atomic regions from SNP 268604 to 269204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,145 DEBUG Processing 853/1127 atomic regions from SNP 255618 to 256218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,283 DEBUG Processing 897/1016 atomic regions from SNP 268904 to 269504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,456 DEBUG Processing 854/1127 atomic regions from SNP 255918 to 256518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,582 DEBUG Processing 898/1016 atomic regions from SNP 269204 to 269804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:38,769 DEBUG Processing 855/1127 atomic regions from SNP 256218 to 256818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:38,866 DEBUG Processing 899/1016 atomic regions from SNP 269504 to 270104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,050 DEBUG Processing 856/1127 atomic regions from SNP 256518 to 257118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,160 DEBUG Processing 900/1016 atomic regions from SNP 269804 to 270404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,335 DEBUG Processing 857/1127 atomic regions from SNP 256818 to 257418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,455 DEBUG Processing 901/1016 atomic regions from SNP 270104 to 270704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,638 DEBUG Processing 858/1127 atomic regions from SNP 257118 to 257718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:39,742 DEBUG Processing 902/1016 atomic regions from SNP 270404 to 271004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:39,953 DEBUG Processing 859/1127 atomic regions from SNP 257418 to 258018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,042 DEBUG Processing 903/1016 atomic regions from SNP 270704 to 271304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,263 DEBUG Processing 860/1127 atomic regions from SNP 257718 to 258318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,355 DEBUG Processing 904/1016 atomic regions from SNP 271004 to 271604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,567 DEBUG Processing 861/1127 atomic regions from SNP 258018 to 258618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,655 DEBUG Processing 905/1016 atomic regions from SNP 271304 to 271904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:40,855 DEBUG Processing 862/1127 atomic regions from SNP 258318 to 258918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:40,956 DEBUG Processing 906/1016 atomic regions from SNP 271604 to 272204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,151 DEBUG Processing 863/1127 atomic regions from SNP 258618 to 259218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,258 DEBUG Processing 907/1016 atomic regions from SNP 271904 to 272504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,473 DEBUG Processing 864/1127 atomic regions from SNP 258918 to 259518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,566 DEBUG Processing 908/1016 atomic regions from SNP 272204 to 272804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:41,764 DEBUG Processing 865/1127 atomic regions from SNP 259218 to 259818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:41,870 DEBUG Processing 909/1016 atomic regions from SNP 272504 to 273104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,048 DEBUG Processing 866/1127 atomic regions from SNP 259518 to 260118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,156 DEBUG Processing 910/1016 atomic regions from SNP 272804 to 273404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,342 DEBUG Processing 867/1127 atomic regions from SNP 259818 to 260418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,435 DEBUG Processing 911/1016 atomic regions from SNP 273104 to 273704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,633 DEBUG Processing 868/1127 atomic regions from SNP 260118 to 260718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:42,721 DEBUG Processing 912/1016 atomic regions from SNP 273404 to 274004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:42,921 DEBUG Processing 869/1127 atomic regions from SNP 260418 to 261018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,023 DEBUG Processing 913/1016 atomic regions from SNP 273704 to 274304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,233 DEBUG Processing 870/1127 atomic regions from SNP 260718 to 261318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,321 DEBUG Processing 914/1016 atomic regions from SNP 274004 to 274604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,521 DEBUG Processing 871/1127 atomic regions from SNP 261018 to 261618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,625 DEBUG Processing 915/1016 atomic regions from SNP 274304 to 274904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:43,826 DEBUG Processing 872/1127 atomic regions from SNP 261318 to 261918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:43,933 DEBUG Processing 916/1016 atomic regions from SNP 274604 to 275204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,121 DEBUG Processing 873/1127 atomic regions from SNP 261618 to 262218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,233 DEBUG Processing 917/1016 atomic regions from SNP 274904 to 275504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,411 DEBUG Processing 874/1127 atomic regions from SNP 261918 to 262518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,515 DEBUG Processing 918/1016 atomic regions from SNP 275204 to 275804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,698 DEBUG Processing 875/1127 atomic regions from SNP 262218 to 262818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:44,797 DEBUG Processing 919/1016 atomic regions from SNP 275504 to 276104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:44,985 DEBUG Processing 876/1127 atomic regions from SNP 262518 to 263118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,078 DEBUG Processing 920/1016 atomic regions from SNP 275804 to 276404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,273 DEBUG Processing 877/1127 atomic regions from SNP 262818 to 263418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,364 DEBUG Processing 921/1016 atomic regions from SNP 276104 to 276704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,550 DEBUG Processing 878/1127 atomic regions from SNP 263118 to 263718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,667 DEBUG Processing 922/1016 atomic regions from SNP 276404 to 277004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:45,822 DEBUG Processing 879/1127 atomic regions from SNP 263418 to 264018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:45,949 DEBUG Processing 923/1016 atomic regions from SNP 276704 to 277304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,100 DEBUG Processing 880/1127 atomic regions from SNP 263718 to 264318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,228 DEBUG Processing 924/1016 atomic regions from SNP 277004 to 277604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,381 DEBUG Processing 881/1127 atomic regions from SNP 264018 to 264618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,510 DEBUG Processing 925/1016 atomic regions from SNP 277304 to 277904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,672 DEBUG Processing 882/1127 atomic regions from SNP 264318 to 264918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:46,787 DEBUG Processing 926/1016 atomic regions from SNP 277604 to 278204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:46,989 DEBUG Processing 883/1127 atomic regions from SNP 264618 to 265218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,058 DEBUG Processing 927/1016 atomic regions from SNP 277904 to 278504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,309 DEBUG Processing 884/1127 atomic regions from SNP 264918 to 265518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,345 DEBUG Processing 928/1016 atomic regions from SNP 278204 to 278804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,623 DEBUG Processing 885/1127 atomic regions from SNP 265218 to 265818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:47,635 DEBUG Processing 929/1016 atomic regions from SNP 278504 to 279104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,922 DEBUG Processing 930/1016 atomic regions from SNP 278804 to 279404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:47,933 DEBUG Processing 886/1127 atomic regions from SNP 265518 to 266118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,210 DEBUG Processing 931/1016 atomic regions from SNP 279104 to 279704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,251 DEBUG Processing 887/1127 atomic regions from SNP 265818 to 266418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,494 DEBUG Processing 932/1016 atomic regions from SNP 279404 to 280004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,560 DEBUG Processing 888/1127 atomic regions from SNP 266118 to 266718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:48,775 DEBUG Processing 933/1016 atomic regions from SNP 279704 to 280304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:48,877 DEBUG Processing 889/1127 atomic regions from SNP 266418 to 267018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,060 DEBUG Processing 934/1016 atomic regions from SNP 280004 to 280604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,199 DEBUG Processing 890/1127 atomic regions from SNP 266718 to 267318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,365 DEBUG Processing 935/1016 atomic regions from SNP 280304 to 280904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,500 DEBUG Processing 891/1127 atomic regions from SNP 267018 to 267618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,646 DEBUG Processing 936/1016 atomic regions from SNP 280604 to 281204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:49,800 DEBUG Processing 892/1127 atomic regions from SNP 267318 to 267918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:49,928 DEBUG Processing 937/1016 atomic regions from SNP 280904 to 281504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,122 DEBUG Processing 893/1127 atomic regions from SNP 267618 to 268218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,209 DEBUG Processing 938/1016 atomic regions from SNP 281204 to 281804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,445 DEBUG Processing 894/1127 atomic regions from SNP 267918 to 268518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,497 DEBUG Processing 939/1016 atomic regions from SNP 281504 to 282104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:50,790 DEBUG Processing 895/1127 atomic regions from SNP 268218 to 268818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:50,804 DEBUG Processing 940/1016 atomic regions from SNP 281804 to 282404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,094 DEBUG Processing 941/1016 atomic regions from SNP 282104 to 282704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,113 DEBUG Processing 896/1127 atomic regions from SNP 268518 to 269118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,403 DEBUG Processing 942/1016 atomic regions from SNP 282404 to 283004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,408 DEBUG Processing 897/1127 atomic regions from SNP 268818 to 269418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,700 DEBUG Processing 943/1016 atomic regions from SNP 282704 to 283304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:51,707 DEBUG Processing 898/1127 atomic regions from SNP 269118 to 269718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:51,999 DEBUG Processing 944/1016 atomic regions from SNP 283004 to 283604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,006 DEBUG Processing 899/1127 atomic regions from SNP 269418 to 270018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,299 DEBUG Processing 900/1127 atomic regions from SNP 269718 to 270318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,303 DEBUG Processing 945/1016 atomic regions from SNP 283304 to 283904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,595 DEBUG Processing 901/1127 atomic regions from SNP 270018 to 270618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,616 DEBUG Processing 946/1016 atomic regions from SNP 283604 to 284204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:52,897 DEBUG Processing 902/1127 atomic regions from SNP 270318 to 270918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:52,931 DEBUG Processing 947/1016 atomic regions from SNP 283904 to 284504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,198 DEBUG Processing 903/1127 atomic regions from SNP 270618 to 271218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,222 DEBUG Processing 948/1016 atomic regions from SNP 284204 to 284804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,495 DEBUG Processing 904/1127 atomic regions from SNP 270918 to 271518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,525 DEBUG Processing 949/1016 atomic regions from SNP 284504 to 285104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:53,798 DEBUG Processing 905/1127 atomic regions from SNP 271218 to 271818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:53,820 DEBUG Processing 950/1016 atomic regions from SNP 284804 to 285404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,096 DEBUG Processing 906/1127 atomic regions from SNP 271518 to 272118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,118 DEBUG Processing 951/1016 atomic regions from SNP 285104 to 285704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,410 DEBUG Processing 907/1127 atomic regions from SNP 271818 to 272418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,430 DEBUG Processing 952/1016 atomic regions from SNP 285404 to 286004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:54,711 DEBUG Processing 908/1127 atomic regions from SNP 272118 to 272718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:54,757 DEBUG Processing 953/1016 atomic regions from SNP 285704 to 286304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,013 DEBUG Processing 909/1127 atomic regions from SNP 272418 to 273018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,095 DEBUG Processing 954/1016 atomic regions from SNP 286004 to 286604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,318 DEBUG Processing 910/1127 atomic regions from SNP 272718 to 273318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,413 DEBUG Processing 955/1016 atomic regions from SNP 286304 to 286904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,614 DEBUG Processing 911/1127 atomic regions from SNP 273018 to 273618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:55,712 DEBUG Processing 956/1016 atomic regions from SNP 286604 to 287204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:55,913 DEBUG Processing 912/1127 atomic regions from SNP 273318 to 273918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,021 DEBUG Processing 957/1016 atomic regions from SNP 286904 to 287504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,207 DEBUG Processing 913/1127 atomic regions from SNP 273618 to 274218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,328 DEBUG Processing 958/1016 atomic regions from SNP 287204 to 287804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,526 DEBUG Processing 914/1127 atomic regions from SNP 273918 to 274518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,630 DEBUG Processing 959/1016 atomic regions from SNP 287504 to 288104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:56,838 DEBUG Processing 915/1127 atomic regions from SNP 274218 to 274818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:56,950 DEBUG Processing 960/1016 atomic regions from SNP 287804 to 288404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,149 DEBUG Processing 916/1127 atomic regions from SNP 274518 to 275118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,279 DEBUG Processing 961/1016 atomic regions from SNP 288104 to 288704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,456 DEBUG Processing 917/1127 atomic regions from SNP 274818 to 275418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,598 DEBUG Processing 962/1016 atomic regions from SNP 288404 to 289004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:57,759 DEBUG Processing 918/1127 atomic regions from SNP 275118 to 275718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:57,891 DEBUG Processing 963/1016 atomic regions from SNP 288704 to 289304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,077 DEBUG Processing 919/1127 atomic regions from SNP 275418 to 276018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,193 DEBUG Processing 964/1016 atomic regions from SNP 289004 to 289604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,394 DEBUG Processing 920/1127 atomic regions from SNP 275718 to 276318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,504 DEBUG Processing 965/1016 atomic regions from SNP 289304 to 289904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:58,714 DEBUG Processing 921/1127 atomic regions from SNP 276018 to 276618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:58,812 DEBUG Processing 966/1016 atomic regions from SNP 289604 to 290204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,025 DEBUG Processing 922/1127 atomic regions from SNP 276318 to 276918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,125 DEBUG Processing 967/1016 atomic regions from SNP 289904 to 290504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,318 DEBUG Processing 923/1127 atomic regions from SNP 276618 to 277218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,442 DEBUG Processing 968/1016 atomic regions from SNP 290204 to 290804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,620 DEBUG Processing 924/1127 atomic regions from SNP 276918 to 277518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:47:59,757 DEBUG Processing 969/1016 atomic regions from SNP 290504 to 291104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:47:59,920 DEBUG Processing 925/1127 atomic regions from SNP 277218 to 277818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,078 DEBUG Processing 970/1016 atomic regions from SNP 290804 to 291404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,225 DEBUG Processing 926/1127 atomic regions from SNP 277518 to 278118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,401 DEBUG Processing 971/1016 atomic regions from SNP 291104 to 291704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,530 DEBUG Processing 927/1127 atomic regions from SNP 277818 to 278418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:00,726 DEBUG Processing 972/1016 atomic regions from SNP 291404 to 292004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:00,817 DEBUG Processing 928/1127 atomic regions from SNP 278118 to 278718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,048 DEBUG Processing 973/1016 atomic regions from SNP 291704 to 292304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,117 DEBUG Processing 929/1127 atomic regions from SNP 278418 to 279018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,364 DEBUG Processing 974/1016 atomic regions from SNP 292004 to 292604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,434 DEBUG Processing 930/1127 atomic regions from SNP 278718 to 279318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,679 DEBUG Processing 975/1016 atomic regions from SNP 292304 to 292904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:01,737 DEBUG Processing 931/1127 atomic regions from SNP 279018 to 279618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:01,975 DEBUG Processing 976/1016 atomic regions from SNP 292604 to 293204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,042 DEBUG Processing 932/1127 atomic regions from SNP 279318 to 279918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,273 DEBUG Processing 977/1016 atomic regions from SNP 292904 to 293504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,351 DEBUG Processing 933/1127 atomic regions from SNP 279618 to 280218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,566 DEBUG Processing 978/1016 atomic regions from SNP 293204 to 293804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,653 DEBUG Processing 934/1127 atomic regions from SNP 279918 to 280518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:02,851 DEBUG Processing 979/1016 atomic regions from SNP 293504 to 294104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:02,956 DEBUG Processing 935/1127 atomic regions from SNP 280218 to 280818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,144 DEBUG Processing 980/1016 atomic regions from SNP 293804 to 294404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,273 DEBUG Processing 936/1127 atomic regions from SNP 280518 to 281118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,437 DEBUG Processing 981/1016 atomic regions from SNP 294104 to 294704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,574 DEBUG Processing 937/1127 atomic regions from SNP 280818 to 281418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:03,731 DEBUG Processing 982/1016 atomic regions from SNP 294404 to 295004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:03,876 DEBUG Processing 938/1127 atomic regions from SNP 281118 to 281718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,023 DEBUG Processing 983/1016 atomic regions from SNP 294704 to 295304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,175 DEBUG Processing 939/1127 atomic regions from SNP 281418 to 282018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,311 DEBUG Processing 984/1016 atomic regions from SNP 295004 to 295604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,496 DEBUG Processing 940/1127 atomic regions from SNP 281718 to 282318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,600 DEBUG Processing 985/1016 atomic regions from SNP 295304 to 295904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:04,807 DEBUG Processing 941/1127 atomic regions from SNP 282018 to 282618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:04,897 DEBUG Processing 986/1016 atomic regions from SNP 295604 to 296204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,117 DEBUG Processing 942/1127 atomic regions from SNP 282318 to 282918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,201 DEBUG Processing 987/1016 atomic regions from SNP 295904 to 296504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,356 DEBUG Segmenting atomic regions: 2025-01-31 09:48:05,422 DEBUG Processing 943/1127 atomic regions from SNP 282618 to 283218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,480 DEBUG Processing 1/847 atomic regions from SNP 0 to 601 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,529 DEBUG Processing 988/1016 atomic regions from SNP 296204 to 296804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,728 DEBUG Processing 944/1127 atomic regions from SNP 282918 to 283518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:05,737 DEBUG Processing 2/847 atomic regions from SNP 301 to 902 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:05,820 DEBUG Processing 989/1016 atomic regions from SNP 296504 to 297104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:05,995 DEBUG Processing 3/847 atomic regions from SNP 602 to 1203 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,051 DEBUG Processing 945/1127 atomic regions from SNP 283218 to 283818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,109 DEBUG Processing 990/1016 atomic regions from SNP 296804 to 297404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,253 DEBUG Processing 4/847 atomic regions from SNP 903 to 1504 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,383 DEBUG Processing 946/1127 atomic regions from SNP 283518 to 284118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,400 DEBUG Processing 991/1016 atomic regions from SNP 297104 to 297704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,511 DEBUG Processing 5/847 atomic regions from SNP 1204 to 1805 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,694 DEBUG Processing 992/1016 atomic regions from SNP 297404 to 298004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:06,722 DEBUG Processing 947/1127 atomic regions from SNP 283818 to 284418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:06,767 DEBUG Processing 6/847 atomic regions from SNP 1505 to 2106 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:06,986 DEBUG Processing 993/1016 atomic regions from SNP 297704 to 298304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,027 DEBUG Processing 7/847 atomic regions from SNP 1806 to 2407 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,057 DEBUG Processing 948/1127 atomic regions from SNP 284118 to 284718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,278 DEBUG Processing 994/1016 atomic regions from SNP 298004 to 298604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,286 DEBUG Processing 8/847 atomic regions from SNP 2107 to 2708 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,403 DEBUG Processing 949/1127 atomic regions from SNP 284418 to 285018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,543 DEBUG Processing 9/847 atomic regions from SNP 2408 to 3009 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,568 DEBUG Processing 995/1016 atomic regions from SNP 298304 to 298904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:07,738 DEBUG Processing 950/1127 atomic regions from SNP 284718 to 285318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:07,823 DEBUG Processing 10/847 atomic regions from SNP 2709 to 3310 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:07,856 DEBUG Processing 996/1016 atomic regions from SNP 298604 to 299204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,064 DEBUG Processing 951/1127 atomic regions from SNP 285018 to 285618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,085 DEBUG Processing 11/847 atomic regions from SNP 3010 to 3611 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,144 DEBUG Processing 997/1016 atomic regions from SNP 298904 to 299504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,352 DEBUG Processing 12/847 atomic regions from SNP 3311 to 3912 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,368 DEBUG Processing 952/1127 atomic regions from SNP 285318 to 285918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,437 DEBUG Processing 998/1016 atomic regions from SNP 299204 to 299804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,623 DEBUG Processing 13/847 atomic regions from SNP 3612 to 4213 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,678 DEBUG Processing 953/1127 atomic regions from SNP 285618 to 286218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:08,740 DEBUG Processing 999/1016 atomic regions from SNP 299504 to 300104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:08,893 DEBUG Processing 14/847 atomic regions from SNP 3913 to 4514 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:08,979 DEBUG Processing 954/1127 atomic regions from SNP 285918 to 286518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,027 DEBUG Processing 1000/1016 atomic regions from SNP 299804 to 300404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,143 DEBUG Processing 15/847 atomic regions from SNP 4214 to 4815 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,273 DEBUG Processing 955/1127 atomic regions from SNP 286218 to 286818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,346 DEBUG Processing 1001/1016 atomic regions from SNP 300104 to 300704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,397 DEBUG Processing 16/847 atomic regions from SNP 4515 to 5116 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,585 DEBUG Processing 956/1127 atomic regions from SNP 286518 to 287118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,666 DEBUG Processing 1002/1016 atomic regions from SNP 300404 to 301004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:09,670 DEBUG Processing 17/847 atomic regions from SNP 4816 to 5417 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,889 DEBUG Processing 957/1127 atomic regions from SNP 286818 to 287418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:09,928 DEBUG Processing 18/847 atomic regions from SNP 5117 to 5718 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:09,955 DEBUG Processing 1003/1016 atomic regions from SNP 300704 to 301304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,186 DEBUG Processing 19/847 atomic regions from SNP 5418 to 6019 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,219 DEBUG Processing 958/1127 atomic regions from SNP 287118 to 287718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,244 DEBUG Processing 1004/1016 atomic regions from SNP 301004 to 301604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,442 DEBUG Processing 20/847 atomic regions from SNP 5719 to 6320 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,542 DEBUG Processing 959/1127 atomic regions from SNP 287418 to 288018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,562 DEBUG Processing 1005/1016 atomic regions from SNP 301304 to 301904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,695 DEBUG Processing 21/847 atomic regions from SNP 6020 to 6621 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:10,845 DEBUG Processing 960/1127 atomic regions from SNP 287718 to 288318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:10,877 DEBUG Processing 1006/1016 atomic regions from SNP 301604 to 302204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:10,957 DEBUG Processing 22/847 atomic regions from SNP 6321 to 6922 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,161 DEBUG Processing 961/1127 atomic regions from SNP 288018 to 288618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,177 DEBUG Processing 1007/1016 atomic regions from SNP 301904 to 302504 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,224 DEBUG Processing 23/847 atomic regions from SNP 6622 to 7223 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,464 DEBUG Processing 962/1127 atomic regions from SNP 288318 to 288918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,475 DEBUG Processing 1008/1016 atomic regions from SNP 302204 to 302804 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,485 DEBUG Processing 24/847 atomic regions from SNP 6923 to 7524 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,742 DEBUG Processing 25/847 atomic regions from SNP 7224 to 7825 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:11,765 DEBUG Processing 963/1127 atomic regions from SNP 288618 to 289218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:11,769 DEBUG Processing 1009/1016 atomic regions from SNP 302504 to 303104 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:11,996 DEBUG Processing 26/847 atomic regions from SNP 7525 to 8126 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,063 DEBUG Processing 1010/1016 atomic regions from SNP 302804 to 303404 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,088 DEBUG Processing 964/1127 atomic regions from SNP 288918 to 289518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,256 DEBUG Processing 27/847 atomic regions from SNP 7826 to 8427 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,346 DEBUG Processing 1011/1016 atomic regions from SNP 303104 to 303704 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,406 DEBUG Processing 965/1127 atomic regions from SNP 289218 to 289818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,525 DEBUG Processing 28/847 atomic regions from SNP 8127 to 8728 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,635 DEBUG Processing 1012/1016 atomic regions from SNP 303404 to 304004 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:12,713 DEBUG Processing 966/1127 atomic regions from SNP 289518 to 290118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:12,789 DEBUG Processing 29/847 atomic regions from SNP 8428 to 9029 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:12,942 DEBUG Processing 1013/1016 atomic regions from SNP 303704 to 304304 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,018 DEBUG Processing 967/1127 atomic regions from SNP 289818 to 290418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,041 DEBUG Processing 30/847 atomic regions from SNP 8729 to 9330 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,267 DEBUG Processing 1014/1016 atomic regions from SNP 304004 to 304604 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,293 DEBUG Processing 31/847 atomic regions from SNP 9030 to 9631 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,319 DEBUG Processing 968/1127 atomic regions from SNP 290118 to 290718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,563 DEBUG Processing 32/847 atomic regions from SNP 9331 to 9932 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,574 DEBUG Processing 1015/1016 atomic regions from SNP 304304 to 304904 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,621 DEBUG Processing 969/1127 atomic regions from SNP 290418 to 291018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:13,812 DEBUG Processing 33/847 atomic regions from SNP 9632 to 10233 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:13,864 DEBUG Processing 1016/1016 atomic regions from SNP 304604 to 305204 for chr2 (subchromosome 1 of 2). 2025-01-31 09:48:13,921 DEBUG Processing 970/1127 atomic regions from SNP 290718 to 291318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,033 DEBUG Unique SNPs positions in subchromosome 1: 305205 2025-01-31 09:48:14,075 DEBUG Processing 34/847 atomic regions from SNP 9933 to 10534 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,227 DEBUG Processing 971/1127 atomic regions from SNP 291018 to 291618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,336 DEBUG Processing 35/847 atomic regions from SNP 10234 to 10835 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,520 DEBUG Processing 972/1127 atomic regions from SNP 291318 to 291918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,592 DEBUG Processing 36/847 atomic regions from SNP 10535 to 11136 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:14,817 DEBUG Processing 973/1127 atomic regions from SNP 291618 to 292218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:14,840 DEBUG Processing 37/847 atomic regions from SNP 10836 to 11437 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,086 DEBUG Processing 38/847 atomic regions from SNP 11137 to 11738 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,114 DEBUG Processing 974/1127 atomic regions from SNP 291918 to 292518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,342 DEBUG Processing 39/847 atomic regions from SNP 11438 to 12039 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,421 DEBUG Processing 975/1127 atomic regions from SNP 292218 to 292818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,607 DEBUG Processing 40/847 atomic regions from SNP 11739 to 12340 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:15,745 DEBUG Processing 976/1127 atomic regions from SNP 292518 to 293118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:15,865 DEBUG Processing 41/847 atomic regions from SNP 12040 to 12641 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,046 DEBUG Processing 977/1127 atomic regions from SNP 292818 to 293418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,118 DEBUG Processing 42/847 atomic regions from SNP 12341 to 12942 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,352 DEBUG Processing 978/1127 atomic regions from SNP 293118 to 293718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,363 DEBUG Processing 43/847 atomic regions from SNP 12642 to 13243 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,614 DEBUG Processing 44/847 atomic regions from SNP 12943 to 13544 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,664 DEBUG Processing 979/1127 atomic regions from SNP 293418 to 294018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:16,867 DEBUG Processing 45/847 atomic regions from SNP 13244 to 13845 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:16,990 DEBUG Processing 980/1127 atomic regions from SNP 293718 to 294318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,123 DEBUG Processing 46/847 atomic regions from SNP 13545 to 14146 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,317 DEBUG Processing 981/1127 atomic regions from SNP 294018 to 294618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,374 DEBUG Processing 47/847 atomic regions from SNP 13846 to 14447 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,624 DEBUG Processing 48/847 atomic regions from SNP 14147 to 14748 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,652 DEBUG Processing 982/1127 atomic regions from SNP 294318 to 294918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:17,876 DEBUG Processing 49/847 atomic regions from SNP 14448 to 15049 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:17,988 DEBUG Processing 983/1127 atomic regions from SNP 294618 to 295218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,127 DEBUG Processing 50/847 atomic regions from SNP 14749 to 15350 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,314 DEBUG Processing 984/1127 atomic regions from SNP 294918 to 295518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,383 DEBUG Processing 51/847 atomic regions from SNP 15050 to 15651 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,617 DEBUG Processing 985/1127 atomic regions from SNP 295218 to 295818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:18,644 DEBUG Processing 52/847 atomic regions from SNP 15351 to 15952 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,900 DEBUG Processing 53/847 atomic regions from SNP 15652 to 16253 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:18,930 DEBUG Processing 986/1127 atomic regions from SNP 295518 to 296118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,147 DEBUG Processing 54/847 atomic regions from SNP 15953 to 16554 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,255 DEBUG Processing 987/1127 atomic regions from SNP 295818 to 296418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,393 DEBUG Processing 55/847 atomic regions from SNP 16254 to 16855 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,588 DEBUG Processing 988/1127 atomic regions from SNP 296118 to 296718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:19,645 DEBUG Processing 56/847 atomic regions from SNP 16555 to 17156 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,903 DEBUG Processing 57/847 atomic regions from SNP 16856 to 17457 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:19,917 DEBUG Processing 989/1127 atomic regions from SNP 296418 to 297018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,157 DEBUG Processing 58/847 atomic regions from SNP 17157 to 17758 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,224 DEBUG Processing 990/1127 atomic regions from SNP 296718 to 297318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,408 DEBUG Processing 59/847 atomic regions from SNP 17458 to 18059 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,533 DEBUG Processing 991/1127 atomic regions from SNP 297018 to 297618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,663 DEBUG Processing 60/847 atomic regions from SNP 17759 to 18360 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:20,847 DEBUG Processing 992/1127 atomic regions from SNP 297318 to 297918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:20,922 DEBUG Processing 61/847 atomic regions from SNP 18060 to 18661 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,154 DEBUG Processing 993/1127 atomic regions from SNP 297618 to 298218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,179 DEBUG Processing 62/847 atomic regions from SNP 18361 to 18962 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,435 DEBUG Processing 63/847 atomic regions from SNP 18662 to 19263 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,456 DEBUG Processing 994/1127 atomic regions from SNP 297918 to 298518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,680 DEBUG Processing 64/847 atomic regions from SNP 18963 to 19564 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:21,759 DEBUG Processing 995/1127 atomic regions from SNP 298218 to 298818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:21,924 DEBUG Processing 65/847 atomic regions from SNP 19264 to 19865 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,060 DEBUG Processing 996/1127 atomic regions from SNP 298518 to 299118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,174 DEBUG Processing 66/847 atomic regions from SNP 19565 to 20166 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,363 DEBUG Processing 997/1127 atomic regions from SNP 298818 to 299418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,430 DEBUG Processing 67/847 atomic regions from SNP 19866 to 20467 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,667 DEBUG Processing 998/1127 atomic regions from SNP 299118 to 299718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:22,692 DEBUG Processing 68/847 atomic regions from SNP 20167 to 20768 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,949 DEBUG Processing 69/847 atomic regions from SNP 20468 to 21069 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:22,966 DEBUG Processing 999/1127 atomic regions from SNP 299418 to 300018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,194 DEBUG Processing 70/847 atomic regions from SNP 20769 to 21370 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,270 DEBUG Processing 1000/1127 atomic regions from SNP 299718 to 300318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,447 DEBUG Processing 71/847 atomic regions from SNP 21070 to 21671 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,580 DEBUG Processing 1001/1127 atomic regions from SNP 300018 to 300618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,703 DEBUG Processing 72/847 atomic regions from SNP 21371 to 21972 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:23,886 DEBUG Processing 1002/1127 atomic regions from SNP 300318 to 300918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:23,968 DEBUG Processing 73/847 atomic regions from SNP 21672 to 22273 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,193 DEBUG Processing 1003/1127 atomic regions from SNP 300618 to 301218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,225 DEBUG Processing 74/847 atomic regions from SNP 21973 to 22574 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,481 DEBUG Processing 75/847 atomic regions from SNP 22274 to 22875 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,494 DEBUG Processing 1004/1127 atomic regions from SNP 300918 to 301518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,729 DEBUG Processing 76/847 atomic regions from SNP 22575 to 23176 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:24,805 DEBUG Processing 1005/1127 atomic regions from SNP 301218 to 301818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:24,983 DEBUG Processing 77/847 atomic regions from SNP 22876 to 23477 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,111 DEBUG Processing 1006/1127 atomic regions from SNP 301518 to 302118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,235 DEBUG Processing 78/847 atomic regions from SNP 23177 to 23778 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,413 DEBUG Processing 1007/1127 atomic regions from SNP 301818 to 302418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,491 DEBUG Processing 79/847 atomic regions from SNP 23478 to 24079 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,710 DEBUG Processing 1008/1127 atomic regions from SNP 302118 to 302718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:25,744 DEBUG Processing 80/847 atomic regions from SNP 23779 to 24380 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:25,998 DEBUG Processing 81/847 atomic regions from SNP 24080 to 24681 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,011 DEBUG Processing 1009/1127 atomic regions from SNP 302418 to 303018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,267 DEBUG Processing 82/847 atomic regions from SNP 24381 to 24982 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,314 DEBUG Processing 1010/1127 atomic regions from SNP 302718 to 303318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,557 DEBUG Processing 83/847 atomic regions from SNP 24682 to 25283 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,628 DEBUG Processing 1011/1127 atomic regions from SNP 303018 to 303618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:26,817 DEBUG Processing 84/847 atomic regions from SNP 24983 to 25584 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:26,927 DEBUG Processing 1012/1127 atomic regions from SNP 303318 to 303918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,075 DEBUG Processing 85/847 atomic regions from SNP 25284 to 25885 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,227 DEBUG Processing 1013/1127 atomic regions from SNP 303618 to 304218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,330 DEBUG Processing 86/847 atomic regions from SNP 25585 to 26186 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,529 DEBUG Processing 1014/1127 atomic regions from SNP 303918 to 304518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:27,587 DEBUG Processing 87/847 atomic regions from SNP 25886 to 26487 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,843 DEBUG Processing 88/847 atomic regions from SNP 26187 to 26788 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:27,862 DEBUG Processing 1015/1127 atomic regions from SNP 304218 to 304818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,105 DEBUG Processing 89/847 atomic regions from SNP 26488 to 27089 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,167 DEBUG Processing 1016/1127 atomic regions from SNP 304518 to 305118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,365 DEBUG Processing 90/847 atomic regions from SNP 26789 to 27390 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,466 DEBUG Processing 1017/1127 atomic regions from SNP 304818 to 305418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,630 DEBUG Processing 91/847 atomic regions from SNP 27090 to 27691 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:28,767 DEBUG Processing 1018/1127 atomic regions from SNP 305118 to 305718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:28,889 DEBUG Processing 92/847 atomic regions from SNP 27391 to 27992 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,065 DEBUG Processing 1019/1127 atomic regions from SNP 305418 to 306018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,140 DEBUG Processing 93/847 atomic regions from SNP 27692 to 28293 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,363 DEBUG Processing 1020/1127 atomic regions from SNP 305718 to 306318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,393 DEBUG Processing 94/847 atomic regions from SNP 27993 to 28594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,647 DEBUG Processing 95/847 atomic regions from SNP 28294 to 28895 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,661 DEBUG Processing 1021/1127 atomic regions from SNP 306018 to 306618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:29,911 DEBUG Processing 96/847 atomic regions from SNP 28595 to 29196 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:29,963 DEBUG Processing 1022/1127 atomic regions from SNP 306318 to 306918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,176 DEBUG Processing 97/847 atomic regions from SNP 28896 to 29497 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,282 DEBUG Processing 1023/1127 atomic regions from SNP 306618 to 307218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,437 DEBUG Processing 98/847 atomic regions from SNP 29197 to 29798 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,608 DEBUG Processing 1024/1127 atomic regions from SNP 306918 to 307518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,699 DEBUG Processing 99/847 atomic regions from SNP 29498 to 30099 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:30,934 DEBUG Processing 1025/1127 atomic regions from SNP 307218 to 307818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:30,969 DEBUG Processing 100/847 atomic regions from SNP 29799 to 30400 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,225 DEBUG Processing 101/847 atomic regions from SNP 30100 to 30701 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,233 DEBUG Processing 1026/1127 atomic regions from SNP 307518 to 308118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,491 DEBUG Processing 102/847 atomic regions from SNP 30401 to 31002 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,533 DEBUG Processing 1027/1127 atomic regions from SNP 307818 to 308418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:31,758 DEBUG Processing 103/847 atomic regions from SNP 30702 to 31303 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:31,836 DEBUG Processing 1028/1127 atomic regions from SNP 308118 to 308718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,021 DEBUG Processing 104/847 atomic regions from SNP 31003 to 31604 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,128 DEBUG Processing 1029/1127 atomic regions from SNP 308418 to 309018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,284 DEBUG Processing 105/847 atomic regions from SNP 31304 to 31905 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,422 DEBUG Processing 1030/1127 atomic regions from SNP 308718 to 309318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,547 DEBUG Processing 106/847 atomic regions from SNP 31605 to 32206 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:32,760 DEBUG Processing 1031/1127 atomic regions from SNP 309018 to 309618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:32,826 DEBUG Processing 107/847 atomic regions from SNP 31906 to 32507 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,091 DEBUG Processing 108/847 atomic regions from SNP 32207 to 32808 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,106 DEBUG Processing 1032/1127 atomic regions from SNP 309318 to 309918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,343 DEBUG Processing 109/847 atomic regions from SNP 32508 to 33109 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,436 DEBUG Processing 1033/1127 atomic regions from SNP 309618 to 310218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,596 DEBUG Processing 110/847 atomic regions from SNP 32809 to 33410 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:33,743 DEBUG Processing 1034/1127 atomic regions from SNP 309918 to 310518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:33,855 DEBUG Processing 111/847 atomic regions from SNP 33110 to 33711 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,062 DEBUG Processing 1035/1127 atomic regions from SNP 310218 to 310818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,123 DEBUG Processing 112/847 atomic regions from SNP 33411 to 34012 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,383 DEBUG Processing 113/847 atomic regions from SNP 33712 to 34313 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,409 DEBUG Processing 1036/1127 atomic regions from SNP 310518 to 311118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,653 DEBUG Processing 114/847 atomic regions from SNP 34013 to 34614 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:34,763 DEBUG Processing 1037/1127 atomic regions from SNP 310818 to 311418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:34,907 DEBUG Processing 115/847 atomic regions from SNP 34314 to 34915 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,097 DEBUG Processing 1038/1127 atomic regions from SNP 311118 to 311718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,159 DEBUG Processing 116/847 atomic regions from SNP 34615 to 35216 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,418 DEBUG Processing 117/847 atomic regions from SNP 34916 to 35517 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,440 DEBUG Processing 1039/1127 atomic regions from SNP 311418 to 312018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,679 DEBUG Processing 118/847 atomic regions from SNP 35217 to 35818 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:35,782 DEBUG Processing 1040/1127 atomic regions from SNP 311718 to 312318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:35,937 DEBUG Processing 119/847 atomic regions from SNP 35518 to 36119 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,121 DEBUG Processing 1041/1127 atomic regions from SNP 312018 to 312618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,196 DEBUG Processing 120/847 atomic regions from SNP 35819 to 36420 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,455 DEBUG Processing 121/847 atomic regions from SNP 36120 to 36721 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,456 DEBUG Processing 1042/1127 atomic regions from SNP 312318 to 312918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,705 DEBUG Processing 122/847 atomic regions from SNP 36421 to 37022 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:36,800 DEBUG Processing 1043/1127 atomic regions from SNP 312618 to 313218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:36,956 DEBUG Processing 123/847 atomic regions from SNP 36722 to 37323 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,107 DEBUG Processing 1044/1127 atomic regions from SNP 312918 to 313518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,208 DEBUG Processing 124/847 atomic regions from SNP 37023 to 37624 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,411 DEBUG Processing 1045/1127 atomic regions from SNP 313218 to 313818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,466 DEBUG Processing 125/847 atomic regions from SNP 37324 to 37925 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,717 DEBUG Processing 126/847 atomic regions from SNP 37625 to 38226 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:37,729 DEBUG Processing 1046/1127 atomic regions from SNP 313518 to 314118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:37,968 DEBUG Processing 127/847 atomic regions from SNP 37926 to 38527 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,039 DEBUG Processing 1047/1127 atomic regions from SNP 313818 to 314418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,229 DEBUG Processing 128/847 atomic regions from SNP 38227 to 38828 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,358 DEBUG Processing 1048/1127 atomic regions from SNP 314118 to 314718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,483 DEBUG Processing 129/847 atomic regions from SNP 38528 to 39129 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,681 DEBUG Processing 1049/1127 atomic regions from SNP 314418 to 315018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,739 DEBUG Processing 130/847 atomic regions from SNP 38829 to 39430 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:38,992 DEBUG Processing 1050/1127 atomic regions from SNP 314718 to 315318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:38,996 DEBUG Processing 131/847 atomic regions from SNP 39130 to 39731 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,260 DEBUG Processing 132/847 atomic regions from SNP 39431 to 40032 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,299 DEBUG Processing 1051/1127 atomic regions from SNP 315018 to 315618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,518 DEBUG Processing 133/847 atomic regions from SNP 39732 to 40333 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,593 DEBUG Processing 1052/1127 atomic regions from SNP 315318 to 315918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:39,777 DEBUG Processing 134/847 atomic regions from SNP 40033 to 40634 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:39,891 DEBUG Processing 1053/1127 atomic regions from SNP 315618 to 316218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,038 DEBUG Processing 135/847 atomic regions from SNP 40334 to 40935 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,198 DEBUG Processing 1054/1127 atomic regions from SNP 315918 to 316518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,296 DEBUG Processing 136/847 atomic regions from SNP 40635 to 41236 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,534 DEBUG Processing 1055/1127 atomic regions from SNP 316218 to 316818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:40,561 DEBUG Processing 137/847 atomic regions from SNP 40936 to 41537 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,826 DEBUG Processing 138/847 atomic regions from SNP 41237 to 41838 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:40,857 DEBUG Processing 1056/1127 atomic regions from SNP 316518 to 317118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,085 DEBUG Processing 139/847 atomic regions from SNP 41538 to 42139 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,154 DEBUG Processing 1057/1127 atomic regions from SNP 316818 to 317418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,339 DEBUG Processing 140/847 atomic regions from SNP 41839 to 42440 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,448 DEBUG Processing 1058/1127 atomic regions from SNP 317118 to 317718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,598 DEBUG Processing 141/847 atomic regions from SNP 42140 to 42741 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:41,743 DEBUG Processing 1059/1127 atomic regions from SNP 317418 to 318018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:41,867 DEBUG Processing 142/847 atomic regions from SNP 42441 to 43042 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,049 DEBUG Processing 1060/1127 atomic regions from SNP 317718 to 318318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,135 DEBUG Processing 143/847 atomic regions from SNP 42742 to 43343 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,357 DEBUG Processing 1061/1127 atomic regions from SNP 318018 to 318618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,391 DEBUG Processing 144/847 atomic regions from SNP 43043 to 43644 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,659 DEBUG Processing 145/847 atomic regions from SNP 43344 to 43945 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:42,682 DEBUG Processing 1062/1127 atomic regions from SNP 318318 to 318918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:42,920 DEBUG Processing 146/847 atomic regions from SNP 43645 to 44246 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,004 DEBUG Processing 1063/1127 atomic regions from SNP 318618 to 319218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,186 DEBUG Processing 147/847 atomic regions from SNP 43946 to 44547 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,326 DEBUG Processing 1064/1127 atomic regions from SNP 318918 to 319518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,456 DEBUG Processing 148/847 atomic regions from SNP 44247 to 44848 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,626 DEBUG Processing 1065/1127 atomic regions from SNP 319218 to 319818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,721 DEBUG Processing 149/847 atomic regions from SNP 44548 to 45149 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:43,943 DEBUG Processing 1066/1127 atomic regions from SNP 319518 to 320118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:43,981 DEBUG Processing 150/847 atomic regions from SNP 44849 to 45450 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,259 DEBUG Processing 151/847 atomic regions from SNP 45150 to 45751 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,280 DEBUG Processing 1067/1127 atomic regions from SNP 319818 to 320418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,538 DEBUG Processing 152/847 atomic regions from SNP 45451 to 46052 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,619 DEBUG Processing 1068/1127 atomic regions from SNP 320118 to 320718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:44,812 DEBUG Processing 153/847 atomic regions from SNP 45752 to 46353 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:44,934 DEBUG Processing 1069/1127 atomic regions from SNP 320418 to 321018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,090 DEBUG Processing 154/847 atomic regions from SNP 46053 to 46654 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,233 DEBUG Processing 1070/1127 atomic regions from SNP 320718 to 321318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,362 DEBUG Processing 155/847 atomic regions from SNP 46354 to 46955 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,535 DEBUG Processing 1071/1127 atomic regions from SNP 321018 to 321618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,620 DEBUG Processing 156/847 atomic regions from SNP 46655 to 47256 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:45,827 DEBUG Processing 1072/1127 atomic regions from SNP 321318 to 321918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:45,867 DEBUG Processing 157/847 atomic regions from SNP 46956 to 47557 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,105 DEBUG Processing 158/847 atomic regions from SNP 47257 to 47858 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,115 DEBUG Processing 1073/1127 atomic regions from SNP 321618 to 322218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,362 DEBUG Processing 159/847 atomic regions from SNP 47558 to 48159 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,401 DEBUG Processing 1074/1127 atomic regions from SNP 321918 to 322518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,615 DEBUG Processing 160/847 atomic regions from SNP 47859 to 48460 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,683 DEBUG Processing 1075/1127 atomic regions from SNP 322218 to 322818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:46,857 DEBUG Processing 161/847 atomic regions from SNP 48160 to 48761 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:46,968 DEBUG Processing 1076/1127 atomic regions from SNP 322518 to 323118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,128 DEBUG Processing 162/847 atomic regions from SNP 48461 to 49062 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,260 DEBUG Processing 1077/1127 atomic regions from SNP 322818 to 323418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,392 DEBUG Processing 163/847 atomic regions from SNP 48762 to 49363 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,520 DEBUG chr10: Estimating proportion of background vs signal 2025-01-31 09:48:47,539 DEBUG Processing 1078/1127 atomic regions from SNP 323118 to 323718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,641 DEBUG Processing 164/847 atomic regions from SNP 49063 to 49664 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:47,814 DEBUG Processing 1079/1127 atomic regions from SNP 323418 to 324018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:47,886 DEBUG Processing 165/847 atomic regions from SNP 49364 to 49965 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,094 DEBUG Processing 1080/1127 atomic regions from SNP 323718 to 324318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,127 DEBUG chr7: Estimating proportion of background vs signal 2025-01-31 09:48:48,131 DEBUG Processing 166/847 atomic regions from SNP 49665 to 50266 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,374 DEBUG Processing 167/847 atomic regions from SNP 49966 to 50567 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,382 DEBUG Processing 1081/1127 atomic regions from SNP 324018 to 324618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,616 DEBUG Processing 168/847 atomic regions from SNP 50267 to 50868 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,686 DEBUG Processing 1082/1127 atomic regions from SNP 324318 to 324918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:48,866 DEBUG Processing 169/847 atomic regions from SNP 50568 to 51169 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:48,980 DEBUG Processing 1083/1127 atomic regions from SNP 324618 to 325218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,111 DEBUG Processing 170/847 atomic regions from SNP 50869 to 51470 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,275 DEBUG Processing 1084/1127 atomic regions from SNP 324918 to 325518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,367 DEBUG Processing 171/847 atomic regions from SNP 51170 to 51771 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,570 DEBUG Processing 1085/1127 atomic regions from SNP 325218 to 325818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,621 DEBUG Processing 172/847 atomic regions from SNP 51471 to 52072 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:49,856 DEBUG Processing 1086/1127 atomic regions from SNP 325518 to 326118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:49,866 DEBUG Processing 173/847 atomic regions from SNP 51772 to 52373 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,121 DEBUG Processing 174/847 atomic regions from SNP 52073 to 52674 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,153 DEBUG Processing 1087/1127 atomic regions from SNP 325818 to 326418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,366 DEBUG Processing 175/847 atomic regions from SNP 52374 to 52975 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,449 DEBUG Processing 1088/1127 atomic regions from SNP 326118 to 326718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,625 DEBUG Processing 176/847 atomic regions from SNP 52675 to 53276 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:50,741 DEBUG Processing 1089/1127 atomic regions from SNP 326418 to 327018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:50,871 DEBUG Processing 177/847 atomic regions from SNP 52976 to 53577 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,031 DEBUG Processing 1090/1127 atomic regions from SNP 326718 to 327318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,112 DEBUG Processing 178/847 atomic regions from SNP 53277 to 53878 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,319 DEBUG Processing 1091/1127 atomic regions from SNP 327018 to 327618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,369 DEBUG Processing 179/847 atomic regions from SNP 53578 to 54179 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,613 DEBUG Processing 1092/1127 atomic regions from SNP 327318 to 327918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:51,643 DEBUG Processing 180/847 atomic regions from SNP 53879 to 54480 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,903 DEBUG Processing 181/847 atomic regions from SNP 54180 to 54781 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:51,911 DEBUG Processing 1093/1127 atomic regions from SNP 327618 to 328218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,179 DEBUG Processing 182/847 atomic regions from SNP 54481 to 55082 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,226 DEBUG Processing 1094/1127 atomic regions from SNP 327918 to 328518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,449 DEBUG Processing 183/847 atomic regions from SNP 54782 to 55383 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,545 DEBUG Processing 1095/1127 atomic regions from SNP 328218 to 328818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,699 DEBUG Processing 184/847 atomic regions from SNP 55083 to 55684 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:52,851 DEBUG Processing 1096/1127 atomic regions from SNP 328518 to 329118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:52,963 DEBUG Processing 185/847 atomic regions from SNP 55384 to 55985 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,138 DEBUG Processing 1097/1127 atomic regions from SNP 328818 to 329418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,208 DEBUG Processing 186/847 atomic regions from SNP 55685 to 56286 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,431 DEBUG Processing 1098/1127 atomic regions from SNP 329118 to 329718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,457 DEBUG Processing 187/847 atomic regions from SNP 55986 to 56587 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,703 DEBUG Processing 188/847 atomic regions from SNP 56287 to 56888 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:53,726 DEBUG Processing 1099/1127 atomic regions from SNP 329418 to 330018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:53,950 DEBUG Processing 189/847 atomic regions from SNP 56588 to 57189 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,015 DEBUG Processing 1100/1127 atomic regions from SNP 329718 to 330318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,196 DEBUG Processing 190/847 atomic regions from SNP 56889 to 57490 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,323 DEBUG Processing 1101/1127 atomic regions from SNP 330018 to 330618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,439 DEBUG Processing 191/847 atomic regions from SNP 57190 to 57791 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,648 DEBUG Processing 1102/1127 atomic regions from SNP 330318 to 330918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:54,673 DEBUG Processing 192/847 atomic regions from SNP 57491 to 58092 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,903 DEBUG Processing 193/847 atomic regions from SNP 57792 to 58393 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:54,967 DEBUG Processing 1103/1127 atomic regions from SNP 330618 to 331218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,142 DEBUG Processing 194/847 atomic regions from SNP 58093 to 58694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,292 DEBUG Processing 1104/1127 atomic regions from SNP 330918 to 331518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,394 DEBUG Processing 195/847 atomic regions from SNP 58394 to 58994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,610 DEBUG Processing 1105/1127 atomic regions from SNP 331218 to 331818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:55,641 DEBUG Processing 196/847 atomic regions from SNP 58694 to 59294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,884 DEBUG Processing 197/847 atomic regions from SNP 58994 to 59594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:55,922 DEBUG Processing 1106/1127 atomic regions from SNP 331518 to 332118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,126 DEBUG Processing 198/847 atomic regions from SNP 59294 to 59894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,226 DEBUG Processing 1107/1127 atomic regions from SNP 331818 to 332418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,365 DEBUG Processing 199/847 atomic regions from SNP 59594 to 60194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,555 DEBUG Processing 1108/1127 atomic regions from SNP 332118 to 332718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:56,609 DEBUG Processing 200/847 atomic regions from SNP 59894 to 60494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,853 DEBUG Processing 201/847 atomic regions from SNP 60194 to 60794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:56,877 DEBUG Processing 1109/1127 atomic regions from SNP 332418 to 333018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,107 DEBUG Processing 202/847 atomic regions from SNP 60494 to 61094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,187 DEBUG Processing 1110/1127 atomic regions from SNP 332718 to 333318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,364 DEBUG Processing 203/847 atomic regions from SNP 60794 to 61394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,475 DEBUG Processing 1111/1127 atomic regions from SNP 333018 to 333618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,630 DEBUG Processing 204/847 atomic regions from SNP 61094 to 61694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:57,759 DEBUG Processing 1112/1127 atomic regions from SNP 333318 to 333918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:57,881 DEBUG Processing 205/847 atomic regions from SNP 61394 to 61994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,054 DEBUG Processing 1113/1127 atomic regions from SNP 333618 to 334218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,150 DEBUG Processing 206/847 atomic regions from SNP 61694 to 62294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,330 DEBUG Processing 1114/1127 atomic regions from SNP 333918 to 334518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,412 DEBUG Processing 207/847 atomic regions from SNP 61994 to 62594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,636 DEBUG Processing 1115/1127 atomic regions from SNP 334218 to 334818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:58,658 DEBUG Processing 208/847 atomic regions from SNP 62294 to 62894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,915 DEBUG Processing 209/847 atomic regions from SNP 62594 to 63194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:58,936 DEBUG Processing 1116/1127 atomic regions from SNP 334518 to 335118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,196 DEBUG Processing 210/847 atomic regions from SNP 62894 to 63494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,231 DEBUG Processing 1117/1127 atomic regions from SNP 334818 to 335418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,460 DEBUG Processing 211/847 atomic regions from SNP 63194 to 63794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,528 DEBUG Processing 1118/1127 atomic regions from SNP 335118 to 335718 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,710 DEBUG Processing 212/847 atomic regions from SNP 63494 to 64094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:48:59,855 DEBUG Processing 1119/1127 atomic regions from SNP 335418 to 336018 for chr1 (subchromosome 1 of 1). 2025-01-31 09:48:59,909 DEBUG Subchromosome time: 368.6439285160741, subchromosome SNPs: 305205 2025-01-31 09:48:59,912 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:48:59,957 DEBUG Processing 213/847 atomic regions from SNP 63794 to 64394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,154 DEBUG Processing 1120/1127 atomic regions from SNP 335718 to 336318 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,208 DEBUG Processing 214/847 atomic regions from SNP 64094 to 64694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,443 DEBUG Processing 1121/1127 atomic regions from SNP 336018 to 336618 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,450 DEBUG Processing 215/847 atomic regions from SNP 64394 to 64994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,624 DEBUG chr8: Estimating proportion of background vs signal 2025-01-31 09:49:00,691 DEBUG Processing 216/847 atomic regions from SNP 64694 to 65294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:00,724 DEBUG Processing 1122/1127 atomic regions from SNP 336318 to 336918 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:00,874 DEBUG Segmenting atomic regions: 2025-01-31 09:49:00,942 DEBUG Processing 217/847 atomic regions from SNP 64994 to 65594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,017 DEBUG Processing 1/25 atomic regions from SNP 0 to 603 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:01,018 DEBUG Processing 1123/1127 atomic regions from SNP 336618 to 337218 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,192 DEBUG Processing 218/847 atomic regions from SNP 65294 to 65894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,303 DEBUG Processing 2/25 atomic regions from SNP 303 to 906 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:01,342 DEBUG Processing 1124/1127 atomic regions from SNP 336918 to 337518 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,434 DEBUG Processing 219/847 atomic regions from SNP 65594 to 66194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,597 DEBUG Processing 3/25 atomic regions from SNP 606 to 1209 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:01,678 DEBUG Processing 1125/1127 atomic regions from SNP 337218 to 337818 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:01,692 DEBUG Processing 220/847 atomic regions from SNP 65894 to 66494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,889 DEBUG Processing 4/25 atomic regions from SNP 909 to 1512 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:01,950 DEBUG Processing 221/847 atomic regions from SNP 66194 to 66794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:01,988 DEBUG Processing 1126/1127 atomic regions from SNP 337518 to 338118 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,187 DEBUG Processing 5/25 atomic regions from SNP 1212 to 1815 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:02,210 DEBUG Processing 222/847 atomic regions from SNP 66494 to 67094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,292 DEBUG Processing 1127/1127 atomic regions from SNP 337818 to 338418 for chr1 (subchromosome 1 of 1). 2025-01-31 09:49:02,456 DEBUG Processing 223/847 atomic regions from SNP 66794 to 67394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,456 DEBUG Unique SNPs positions in subchromosome 1: 338419 2025-01-31 09:49:02,461 DEBUG Processing 6/25 atomic regions from SNP 1515 to 2118 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:02,699 DEBUG Processing 224/847 atomic regions from SNP 67094 to 67694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,730 DEBUG Processing 7/25 atomic regions from SNP 1818 to 2421 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:02,938 DEBUG Processing 225/847 atomic regions from SNP 67394 to 67994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:02,996 DEBUG Processing 8/25 atomic regions from SNP 2121 to 2724 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:03,188 DEBUG Processing 226/847 atomic regions from SNP 67694 to 68294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,267 DEBUG Processing 9/25 atomic regions from SNP 2424 to 3027 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:03,444 DEBUG Processing 227/847 atomic regions from SNP 67994 to 68594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,542 DEBUG Processing 10/25 atomic regions from SNP 2727 to 3330 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:03,694 DEBUG Processing 228/847 atomic regions from SNP 68294 to 68894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:03,811 DEBUG Processing 11/25 atomic regions from SNP 3030 to 3633 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:03,938 DEBUG Processing 229/847 atomic regions from SNP 68594 to 69194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,079 DEBUG Processing 12/25 atomic regions from SNP 3333 to 3936 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:04,184 DEBUG Processing 230/847 atomic regions from SNP 68894 to 69494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,358 DEBUG chr10:0-130694993: Signal thresholds approximated 2025-01-31 09:49:04,360 DEBUG chr10: Signal quantile: 0.991. signal threshold: 14. Best RMSEA: 0.014 2025-01-31 09:49:04,362 DEBUG Processing 13/25 atomic regions from SNP 3636 to 4239 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:04,428 DEBUG Processing 231/847 atomic regions from SNP 69194 to 69794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,656 DEBUG Processing 14/25 atomic regions from SNP 3939 to 4541 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:04,667 DEBUG Processing 232/847 atomic regions from SNP 69494 to 70094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,904 DEBUG Processing 233/847 atomic regions from SNP 69794 to 70394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:04,947 DEBUG Processing 15/25 atomic regions from SNP 4241 to 4843 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:05,146 DEBUG Processing 234/847 atomic regions from SNP 70094 to 70694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,242 DEBUG Processing 16/25 atomic regions from SNP 4543 to 5145 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:05,387 DEBUG Processing 235/847 atomic regions from SNP 70394 to 70994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,543 DEBUG Processing 17/25 atomic regions from SNP 4845 to 5447 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:05,625 DEBUG Processing 236/847 atomic regions from SNP 70694 to 71294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:05,833 DEBUG Processing 18/25 atomic regions from SNP 5147 to 5749 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:05,857 DEBUG Processing 237/847 atomic regions from SNP 70994 to 71594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,096 DEBUG Processing 238/847 atomic regions from SNP 71294 to 71894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,135 DEBUG Processing 19/25 atomic regions from SNP 5449 to 6051 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:06,322 DEBUG Processing 239/847 atomic regions from SNP 71594 to 72194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,425 DEBUG Processing 20/25 atomic regions from SNP 5751 to 6353 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:06,563 DEBUG Processing 240/847 atomic regions from SNP 71894 to 72494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,681 DEBUG chr10 total SNP count: 222856 2025-01-31 09:49:06,681 DEBUG chr10 length: 130694993 2025-01-31 09:49:06,681 DEBUG ----------------------------------------- 2025-01-31 09:49:06,681 INFO Processing SNPs in chr10 2025-01-31 09:49:06,715 DEBUG Processing 21/25 atomic regions from SNP 6053 to 6655 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:06,800 DEBUG Processing 241/847 atomic regions from SNP 72194 to 72794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:06,921 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 222856)] 2025-01-31 09:49:07,002 DEBUG Processing 22/25 atomic regions from SNP 6355 to 6957 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:07,031 DEBUG Processing 242/847 atomic regions from SNP 72494 to 73094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,083 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:07,269 DEBUG Processing 243/847 atomic regions from SNP 72794 to 73394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,299 DEBUG Processing 23/25 atomic regions from SNP 6657 to 7259 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:07,501 DEBUG Processing 244/847 atomic regions from SNP 73094 to 73694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,604 DEBUG Processing 24/25 atomic regions from SNP 6959 to 7561 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:07,743 DEBUG Processing 245/847 atomic regions from SNP 73394 to 73994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:07,913 DEBUG Processing 25/25 atomic regions from SNP 7261 to 7863 for chr2 (subchromosome 2 of 2). 2025-01-31 09:49:07,997 DEBUG Processing 246/847 atomic regions from SNP 73694 to 74294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,057 DEBUG Unique SNPs positions in subchromosome 2: 7864 2025-01-31 09:49:08,068 DEBUG Subchromosome time: 8.15578272100538, subchromosome SNPs: 7864 2025-01-31 09:49:08,068 DEBUG Estimated BADs: [2.04, 0.41, 2.04, 0.51, 2.04, 6.13, 0.41, 4.09, 0.34, 2.04, 0.34, 1.02, 0.34, 4.09, 1.02, 4.09, 2.04, 0.41, 2.04, 10.22, 0.29, 2.04, 4.09, 0.29, 2.04, 0.68, 2.04, 1.02, 6.13, 0.68, 2.04, 4.09, 2.04, 1.02, 2.04, 6.13, 2.04, 6.13, 2.04, 4.09, 2.04, 10.22] SNP counts: [8218, 2416, 11227, 4367, 11836, 21465, 1265, 4233, 8071, 2400, 3889, 9624, 6180, 704, 21908, 6951, 13733, 3291, 2658, 1248, 6300, 2122, 7504, 9286, 12594, 7017, 4402, 6910, 7352, 2816, 5501, 9736, 7271, 13395, 12623, 13893, 7972, 9722, 7929, 5176, 3745, 4119] SNP IDs counts: [8218, 2416, 11227, 4367, 11836, 21465, 1265, 4233, 8071, 2400, 3889, 9624, 6180, 704, 21908, 6951, 13733, 3291, 2658, 1248, 6300, 2122, 7504, 9286, 12594, 7017, 4402, 6910, 7352, 2816, 5501, 9736, 7271, 13395, 12623, 13893, 7972, 9722, 7929, 5176, 3745, 4119] Critical gap: 728713bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 7.56Mbp, 9.01Mbp, 15.39Mbp, 18.03Mbp, 24.92Mbp, 36.24Mbp, 37.05Mbp, 39.37Mbp, 44.23Mbp, 45.51Mbp, 47.90Mbp, 53.20Mbp, 57.11Mbp, 57.49Mbp, 69.82Mbp, 73.49Mbp, 80.94Mbp, 82.96Mbp, 84.65Mbp, 85.33Mbp, 89.38Mbp, 90.85Mbp, 94.79Mbp, 101.10Mbp, 107.98Mbp, 112.24Mbp, 114.69Mbp, 118.48Mbp, 122.38Mbp, 124.04Mbp, 127.05Mbp, 132.24Mbp, 136.23Mbp, 143.83Mbp, 150.90Mbp, 158.59Mbp, 162.93Mbp, 168.08Mbp, 172.29Mbp, 175.18Mbp[1.52Mbp], 179.82Mbp, 182.11Mbp] 2025-01-31 09:49:08,069 DEBUG chr2 time: 8.156568114995025 s 2025-01-31 09:49:08,243 DEBUG Processing 247/847 atomic regions from SNP 73994 to 74594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,251 DEBUG chr2: Fitting background model for 42 segments 2025-01-31 09:49:08,487 DEBUG Processing 248/847 atomic regions from SNP 74294 to 74894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,723 DEBUG Processing 249/847 atomic regions from SNP 74594 to 75194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:08,971 DEBUG Processing 250/847 atomic regions from SNP 74894 to 75494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,222 DEBUG Processing 251/847 atomic regions from SNP 75194 to 75794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,470 DEBUG Processing 252/847 atomic regions from SNP 75494 to 76094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,707 DEBUG Processing 253/847 atomic regions from SNP 75794 to 76394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:09,947 DEBUG Processing 254/847 atomic regions from SNP 76094 to 76694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,184 DEBUG Processing 255/847 atomic regions from SNP 76394 to 76994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,473 DEBUG Processing 256/847 atomic regions from SNP 76694 to 77294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:10,749 DEBUG Processing 257/847 atomic regions from SNP 76994 to 77594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,008 DEBUG Processing 258/847 atomic regions from SNP 77294 to 77894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,247 DEBUG Processing 259/847 atomic regions from SNP 77594 to 78194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,483 DEBUG Processing 260/847 atomic regions from SNP 77894 to 78494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,726 DEBUG Processing 261/847 atomic regions from SNP 78194 to 78794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:11,971 DEBUG Processing 262/847 atomic regions from SNP 78494 to 79094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,227 DEBUG Processing 263/847 atomic regions from SNP 78794 to 79394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,482 DEBUG Processing 264/847 atomic regions from SNP 79094 to 79694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:12,749 DEBUG Processing 265/847 atomic regions from SNP 79394 to 79994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,014 DEBUG Processing 266/847 atomic regions from SNP 79694 to 80294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,248 DEBUG Processing 267/847 atomic regions from SNP 79994 to 80594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,252 DEBUG chr7:0-145441459: Signal thresholds approximated 2025-01-31 09:49:13,254 DEBUG chr7: Signal quantile: 0.988. signal threshold: 14. Best RMSEA: 0.012 2025-01-31 09:49:13,486 DEBUG Processing 268/847 atomic regions from SNP 80294 to 80894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,723 DEBUG Processing 269/847 atomic regions from SNP 80594 to 81194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:13,967 DEBUG Processing 270/847 atomic regions from SNP 80894 to 81494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,203 DEBUG Processing 271/847 atomic regions from SNP 81194 to 81794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,436 DEBUG Processing 272/847 atomic regions from SNP 81494 to 82094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,672 DEBUG Processing 273/847 atomic regions from SNP 81794 to 82394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:14,914 DEBUG Processing 274/847 atomic regions from SNP 82094 to 82694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,154 DEBUG Processing 275/847 atomic regions from SNP 82394 to 82994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,389 DEBUG Processing 276/847 atomic regions from SNP 82694 to 83294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,636 DEBUG Processing 277/847 atomic regions from SNP 82994 to 83594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,881 DEBUG Processing 278/847 atomic regions from SNP 83294 to 83894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:15,932 DEBUG chr7 total SNP count: 230503 2025-01-31 09:49:15,932 DEBUG chr7 length: 145441459 2025-01-31 09:49:15,932 DEBUG ----------------------------------------- 2025-01-31 09:49:15,932 INFO Processing SNPs in chr7 2025-01-31 09:49:16,146 DEBUG Processing 279/847 atomic regions from SNP 83594 to 84194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,320 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 20548), (20548, 20571), (20571, 230503)] 2025-01-31 09:49:16,384 DEBUG Processing 280/847 atomic regions from SNP 83894 to 84494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,435 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:16,647 DEBUG Processing 281/847 atomic regions from SNP 84194 to 84794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:16,894 DEBUG Processing 282/847 atomic regions from SNP 84494 to 85094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,139 DEBUG Processing 283/847 atomic regions from SNP 84794 to 85394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,167 DEBUG chr8:0-129401213: Signal thresholds approximated 2025-01-31 09:49:17,169 DEBUG chr8: Signal quantile: 0.991. signal threshold: 16. Best RMSEA: 0.015 2025-01-31 09:49:17,377 DEBUG Processing 284/847 atomic regions from SNP 85094 to 85694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,624 DEBUG Processing 285/847 atomic regions from SNP 85394 to 85994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:17,877 DEBUG Processing 286/847 atomic regions from SNP 85694 to 86294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,124 DEBUG Processing 287/847 atomic regions from SNP 85994 to 86594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,368 DEBUG Processing 288/847 atomic regions from SNP 86294 to 86894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,611 DEBUG Processing 289/847 atomic regions from SNP 86594 to 87194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,855 DEBUG Processing 290/847 atomic regions from SNP 86894 to 87494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:18,967 DEBUG Segmenting atomic regions: 2025-01-31 09:49:19,075 DEBUG Processing 1/67 atomic regions from SNP 0 to 603 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,110 DEBUG Processing 291/847 atomic regions from SNP 87194 to 87794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,307 DEBUG Processing 2/67 atomic regions from SNP 303 to 906 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,352 DEBUG Processing 292/847 atomic regions from SNP 87494 to 88094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,540 DEBUG Processing 3/67 atomic regions from SNP 606 to 1209 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,546 DEBUG chr8 total SNP count: 218497 2025-01-31 09:49:19,546 DEBUG chr8 length: 129401213 2025-01-31 09:49:19,546 DEBUG ----------------------------------------- 2025-01-31 09:49:19,546 INFO Processing SNPs in chr8 2025-01-31 09:49:19,601 DEBUG Processing 293/847 atomic regions from SNP 87794 to 88394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,780 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 218497)] 2025-01-31 09:49:19,797 DEBUG Processing 4/67 atomic regions from SNP 909 to 1512 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:19,838 DEBUG Processing 294/847 atomic regions from SNP 88094 to 88694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:19,938 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:20,042 DEBUG Processing 5/67 atomic regions from SNP 1212 to 1815 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,085 DEBUG Processing 295/847 atomic regions from SNP 88394 to 88994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,291 DEBUG Processing 6/67 atomic regions from SNP 1515 to 2118 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,336 DEBUG Processing 296/847 atomic regions from SNP 88694 to 89294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,534 DEBUG Processing 7/67 atomic regions from SNP 1818 to 2421 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,585 DEBUG Processing 297/847 atomic regions from SNP 88994 to 89594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:20,789 DEBUG Processing 8/67 atomic regions from SNP 2121 to 2724 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:20,842 DEBUG Processing 298/847 atomic regions from SNP 89294 to 89894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,052 DEBUG Processing 9/67 atomic regions from SNP 2424 to 3027 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,112 DEBUG Processing 299/847 atomic regions from SNP 89594 to 90194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,318 DEBUG Processing 10/67 atomic regions from SNP 2727 to 3330 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,372 DEBUG Processing 300/847 atomic regions from SNP 89894 to 90494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,577 DEBUG Processing 11/67 atomic regions from SNP 3030 to 3633 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,619 DEBUG Processing 301/847 atomic regions from SNP 90194 to 90794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:21,808 DEBUG Processing 12/67 atomic regions from SNP 3333 to 3936 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:21,859 DEBUG Processing 302/847 atomic regions from SNP 90494 to 91094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,037 DEBUG Processing 13/67 atomic regions from SNP 3636 to 4239 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,092 DEBUG Processing 303/847 atomic regions from SNP 90794 to 91394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,268 DEBUG Processing 14/67 atomic regions from SNP 3939 to 4541 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,330 DEBUG Processing 304/847 atomic regions from SNP 91094 to 91694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,509 DEBUG Processing 15/67 atomic regions from SNP 4241 to 4843 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,577 DEBUG Processing 305/847 atomic regions from SNP 91394 to 91994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:22,760 DEBUG Processing 16/67 atomic regions from SNP 4543 to 5145 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:22,819 DEBUG Processing 306/847 atomic regions from SNP 91694 to 92294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,027 DEBUG Processing 17/67 atomic regions from SNP 4845 to 5447 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,056 DEBUG Processing 307/847 atomic regions from SNP 91994 to 92594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,281 DEBUG Processing 18/67 atomic regions from SNP 5147 to 5749 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,289 DEBUG Processing 308/847 atomic regions from SNP 92294 to 92894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,528 DEBUG Processing 309/847 atomic regions from SNP 92594 to 93194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,529 DEBUG Processing 19/67 atomic regions from SNP 5449 to 6051 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:23,777 DEBUG Processing 310/847 atomic regions from SNP 92894 to 93494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:23,794 DEBUG Processing 20/67 atomic regions from SNP 5751 to 6353 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,028 DEBUG Processing 311/847 atomic regions from SNP 93194 to 93794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,052 DEBUG Processing 21/67 atomic regions from SNP 6053 to 6655 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,289 DEBUG Processing 22/67 atomic regions from SNP 6355 to 6957 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,291 DEBUG Processing 312/847 atomic regions from SNP 93494 to 94094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,520 DEBUG Processing 23/67 atomic regions from SNP 6657 to 7259 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,533 DEBUG Processing 313/847 atomic regions from SNP 93794 to 94394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,750 DEBUG Processing 24/67 atomic regions from SNP 6959 to 7561 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:24,770 DEBUG Processing 314/847 atomic regions from SNP 94094 to 94694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:24,987 DEBUG Processing 25/67 atomic regions from SNP 7261 to 7863 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,011 DEBUG Processing 315/847 atomic regions from SNP 94394 to 94994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,222 DEBUG Processing 26/67 atomic regions from SNP 7563 to 8165 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,257 DEBUG Processing 316/847 atomic regions from SNP 94694 to 95294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,456 DEBUG Processing 27/67 atomic regions from SNP 7865 to 8467 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,513 DEBUG Processing 317/847 atomic regions from SNP 94994 to 95594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,682 DEBUG Processing 28/67 atomic regions from SNP 8167 to 8769 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,750 DEBUG Processing 318/847 atomic regions from SNP 95294 to 95894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:25,908 DEBUG Processing 29/67 atomic regions from SNP 8469 to 9071 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:25,982 DEBUG Processing 319/847 atomic regions from SNP 95594 to 96194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,136 DEBUG Processing 30/67 atomic regions from SNP 8771 to 9373 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,219 DEBUG Processing 320/847 atomic regions from SNP 95894 to 96494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,363 DEBUG Processing 31/67 atomic regions from SNP 9073 to 9675 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,459 DEBUG Processing 321/847 atomic regions from SNP 96194 to 96794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,589 DEBUG Processing 32/67 atomic regions from SNP 9375 to 9977 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,696 DEBUG Processing 322/847 atomic regions from SNP 96494 to 97094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:26,826 DEBUG Processing 33/67 atomic regions from SNP 9677 to 10279 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:26,931 DEBUG Processing 323/847 atomic regions from SNP 96794 to 97394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,071 DEBUG Processing 34/67 atomic regions from SNP 9979 to 10581 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,174 DEBUG Processing 324/847 atomic regions from SNP 97094 to 97694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,332 DEBUG Processing 35/67 atomic regions from SNP 10281 to 10883 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,413 DEBUG Processing 325/847 atomic regions from SNP 97394 to 97994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,603 DEBUG Processing 36/67 atomic regions from SNP 10583 to 11185 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,656 DEBUG Processing 326/847 atomic regions from SNP 97694 to 98294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:27,836 DEBUG Processing 37/67 atomic regions from SNP 10885 to 11487 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:27,900 DEBUG Processing 327/847 atomic regions from SNP 97994 to 98594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,068 DEBUG Processing 38/67 atomic regions from SNP 11187 to 11789 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,144 DEBUG Processing 328/847 atomic regions from SNP 98294 to 98894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,304 DEBUG Processing 39/67 atomic regions from SNP 11489 to 12091 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,383 DEBUG Processing 329/847 atomic regions from SNP 98594 to 99194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,534 DEBUG Processing 40/67 atomic regions from SNP 11791 to 12393 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,620 DEBUG Processing 330/847 atomic regions from SNP 98894 to 99494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,764 DEBUG Processing 41/67 atomic regions from SNP 12093 to 12695 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:28,854 DEBUG Processing 331/847 atomic regions from SNP 99194 to 99794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:28,999 DEBUG Processing 42/67 atomic regions from SNP 12395 to 12997 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,085 DEBUG Processing 332/847 atomic regions from SNP 99494 to 100094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,241 DEBUG Processing 43/67 atomic regions from SNP 12697 to 13299 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,325 DEBUG Processing 333/847 atomic regions from SNP 99794 to 100394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,479 DEBUG Processing 44/67 atomic regions from SNP 12999 to 13601 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,566 DEBUG Processing 334/847 atomic regions from SNP 100094 to 100694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,706 DEBUG Processing 45/67 atomic regions from SNP 13301 to 13903 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:29,804 DEBUG Processing 335/847 atomic regions from SNP 100394 to 100994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:29,933 DEBUG Processing 46/67 atomic regions from SNP 13603 to 14205 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,036 DEBUG Processing 336/847 atomic regions from SNP 100694 to 101294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,198 DEBUG Processing 47/67 atomic regions from SNP 13905 to 14507 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,268 DEBUG Processing 337/847 atomic regions from SNP 100994 to 101594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,465 DEBUG Processing 48/67 atomic regions from SNP 14207 to 14809 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,502 DEBUG Processing 338/847 atomic regions from SNP 101294 to 101894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,741 DEBUG Processing 49/67 atomic regions from SNP 14509 to 15111 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:30,752 DEBUG Processing 339/847 atomic regions from SNP 101594 to 102194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:30,999 DEBUG Processing 340/847 atomic regions from SNP 101894 to 102494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,016 DEBUG Processing 50/67 atomic regions from SNP 14811 to 15413 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,243 DEBUG Processing 341/847 atomic regions from SNP 102194 to 102794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,263 DEBUG Processing 51/67 atomic regions from SNP 15113 to 15715 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,491 DEBUG Processing 342/847 atomic regions from SNP 102494 to 103094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,528 DEBUG Processing 52/67 atomic regions from SNP 15415 to 16017 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,722 DEBUG Processing 343/847 atomic regions from SNP 102794 to 103394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:31,785 DEBUG Processing 53/67 atomic regions from SNP 15717 to 16319 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:31,961 DEBUG Processing 344/847 atomic regions from SNP 103094 to 103694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,036 DEBUG Processing 54/67 atomic regions from SNP 16019 to 16621 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,205 DEBUG Processing 345/847 atomic regions from SNP 103394 to 103994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,261 DEBUG Processing 55/67 atomic regions from SNP 16321 to 16923 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,452 DEBUG Processing 346/847 atomic regions from SNP 103694 to 104294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,498 DEBUG Processing 56/67 atomic regions from SNP 16623 to 17225 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,699 DEBUG Processing 347/847 atomic regions from SNP 103994 to 104594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,736 DEBUG Processing 57/67 atomic regions from SNP 16925 to 17527 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:32,938 DEBUG Processing 348/847 atomic regions from SNP 104294 to 104894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:32,976 DEBUG Processing 58/67 atomic regions from SNP 17227 to 17829 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:33,175 DEBUG Processing 349/847 atomic regions from SNP 104594 to 105194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,208 DEBUG Processing 59/67 atomic regions from SNP 17529 to 18131 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:33,413 DEBUG Processing 350/847 atomic regions from SNP 104894 to 105494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,437 DEBUG Processing 60/67 atomic regions from SNP 17831 to 18433 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:33,656 DEBUG Processing 351/847 atomic regions from SNP 105194 to 105794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,670 DEBUG Processing 61/67 atomic regions from SNP 18133 to 18735 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:33,893 DEBUG Processing 352/847 atomic regions from SNP 105494 to 106094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:33,924 DEBUG Processing 62/67 atomic regions from SNP 18435 to 19037 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:34,133 DEBUG Processing 353/847 atomic regions from SNP 105794 to 106394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,197 DEBUG Processing 63/67 atomic regions from SNP 18737 to 19339 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:34,379 DEBUG Processing 354/847 atomic regions from SNP 106094 to 106694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,467 DEBUG Processing 64/67 atomic regions from SNP 19039 to 19641 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:34,614 DEBUG Processing 355/847 atomic regions from SNP 106394 to 106994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,728 DEBUG Processing 65/67 atomic regions from SNP 19341 to 19943 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:34,745 DEBUG Segmenting atomic regions: 2025-01-31 09:49:34,845 DEBUG Processing 356/847 atomic regions from SNP 106694 to 107294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:34,851 DEBUG Processing 1/741 atomic regions from SNP 0 to 601 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:34,993 DEBUG Processing 66/67 atomic regions from SNP 19643 to 20245 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:35,070 DEBUG Processing 2/741 atomic regions from SNP 301 to 902 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,079 DEBUG Processing 357/847 atomic regions from SNP 106994 to 107594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,242 DEBUG Processing 67/67 atomic regions from SNP 19945 to 20547 for chr7 (subchromosome 1 of 3). 2025-01-31 09:49:35,293 DEBUG Processing 3/741 atomic regions from SNP 602 to 1203 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,312 DEBUG Processing 358/847 atomic regions from SNP 107294 to 107894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,369 DEBUG Unique SNPs positions in subchromosome 1: 20548 2025-01-31 09:49:35,432 DEBUG Subchromosome time: 18.997227117069997, subchromosome SNPs: 20548 2025-01-31 09:49:35,485 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:49:35,523 DEBUG Processing 4/741 atomic regions from SNP 903 to 1504 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,553 DEBUG Processing 359/847 atomic regions from SNP 107594 to 108194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,746 DEBUG Processing 5/741 atomic regions from SNP 1204 to 1805 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:35,800 DEBUG Processing 360/847 atomic regions from SNP 107894 to 108494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:35,964 DEBUG Processing 6/741 atomic regions from SNP 1505 to 2106 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,033 DEBUG Processing 361/847 atomic regions from SNP 108194 to 108794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,187 DEBUG Processing 7/741 atomic regions from SNP 1806 to 2407 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,261 DEBUG Processing 362/847 atomic regions from SNP 108494 to 109094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,428 DEBUG Processing 8/741 atomic regions from SNP 2107 to 2708 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,492 DEBUG Processing 363/847 atomic regions from SNP 108794 to 109394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,675 DEBUG Processing 9/741 atomic regions from SNP 2408 to 3009 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,725 DEBUG Processing 364/847 atomic regions from SNP 109094 to 109694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:36,896 DEBUG Processing 10/741 atomic regions from SNP 2709 to 3310 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:36,957 DEBUG Processing 365/847 atomic regions from SNP 109394 to 109994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,115 DEBUG Processing 11/741 atomic regions from SNP 3010 to 3611 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,190 DEBUG Processing 366/847 atomic regions from SNP 109694 to 110294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,333 DEBUG Processing 12/741 atomic regions from SNP 3311 to 3912 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,422 DEBUG Processing 367/847 atomic regions from SNP 109994 to 110594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,555 DEBUG Processing 13/741 atomic regions from SNP 3612 to 4213 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,700 DEBUG Processing 368/847 atomic regions from SNP 110294 to 110894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,774 DEBUG Processing 14/741 atomic regions from SNP 3913 to 4514 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:37,957 DEBUG Processing 369/847 atomic regions from SNP 110594 to 111194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:37,999 DEBUG Processing 15/741 atomic regions from SNP 4214 to 4815 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,194 DEBUG Processing 370/847 atomic regions from SNP 110894 to 111494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,230 DEBUG Processing 16/741 atomic regions from SNP 4515 to 5116 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,425 DEBUG Processing 371/847 atomic regions from SNP 111194 to 111794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,481 DEBUG Processing 17/741 atomic regions from SNP 4816 to 5417 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,656 DEBUG Processing 372/847 atomic regions from SNP 111494 to 112094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,703 DEBUG Processing 18/741 atomic regions from SNP 5117 to 5718 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:38,884 DEBUG Processing 373/847 atomic regions from SNP 111794 to 112394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:38,921 DEBUG Processing 19/741 atomic regions from SNP 5418 to 6019 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,115 DEBUG Processing 374/847 atomic regions from SNP 112094 to 112694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,142 DEBUG Processing 20/741 atomic regions from SNP 5719 to 6320 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,344 DEBUG Processing 375/847 atomic regions from SNP 112394 to 112994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,361 DEBUG Processing 21/741 atomic regions from SNP 6020 to 6621 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,574 DEBUG Processing 376/847 atomic regions from SNP 112694 to 113294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:39,579 DEBUG Processing 22/741 atomic regions from SNP 6321 to 6922 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,797 DEBUG Processing 23/741 atomic regions from SNP 6622 to 7223 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:39,806 DEBUG Processing 377/847 atomic regions from SNP 112994 to 113594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,016 DEBUG Processing 24/741 atomic regions from SNP 6923 to 7524 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,038 DEBUG Processing 378/847 atomic regions from SNP 113294 to 113894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,233 DEBUG Processing 25/741 atomic regions from SNP 7224 to 7825 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,272 DEBUG Processing 379/847 atomic regions from SNP 113594 to 114194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,458 DEBUG Processing 26/741 atomic regions from SNP 7525 to 8126 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,506 DEBUG Processing 380/847 atomic regions from SNP 113894 to 114494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,705 DEBUG Processing 27/741 atomic regions from SNP 7826 to 8427 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,747 DEBUG Processing 381/847 atomic regions from SNP 114194 to 114794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:40,926 DEBUG Processing 28/741 atomic regions from SNP 8127 to 8728 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:40,976 DEBUG Processing 382/847 atomic regions from SNP 114494 to 115094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,146 DEBUG Processing 29/741 atomic regions from SNP 8428 to 9029 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,210 DEBUG Processing 383/847 atomic regions from SNP 114794 to 115394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,371 DEBUG Processing 30/741 atomic regions from SNP 8729 to 9330 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,447 DEBUG Processing 384/847 atomic regions from SNP 115094 to 115694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,580 DEBUG Processing 31/741 atomic regions from SNP 9030 to 9631 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,675 DEBUG Processing 385/847 atomic regions from SNP 115394 to 115994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:41,790 DEBUG Processing 32/741 atomic regions from SNP 9331 to 9932 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:41,907 DEBUG Processing 386/847 atomic regions from SNP 115694 to 116294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,006 DEBUG Processing 33/741 atomic regions from SNP 9632 to 10233 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,162 DEBUG Processing 387/847 atomic regions from SNP 115994 to 116594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,222 DEBUG Processing 34/741 atomic regions from SNP 9933 to 10534 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,391 DEBUG Processing 388/847 atomic regions from SNP 116294 to 116894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,439 DEBUG Processing 35/741 atomic regions from SNP 10234 to 10835 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,621 DEBUG Processing 389/847 atomic regions from SNP 116594 to 117194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,659 DEBUG Processing 36/741 atomic regions from SNP 10535 to 11136 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:42,854 DEBUG Processing 390/847 atomic regions from SNP 116894 to 117494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:42,877 DEBUG Processing 37/741 atomic regions from SNP 10836 to 11437 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,096 DEBUG Processing 38/741 atomic regions from SNP 11137 to 11738 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,111 DEBUG Processing 391/847 atomic regions from SNP 117194 to 117794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,313 DEBUG Processing 39/741 atomic regions from SNP 11438 to 12039 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,355 DEBUG Processing 392/847 atomic regions from SNP 117494 to 118094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,524 DEBUG Processing 40/741 atomic regions from SNP 11739 to 12340 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,603 DEBUG Processing 393/847 atomic regions from SNP 117794 to 118394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,735 DEBUG Processing 41/741 atomic regions from SNP 12040 to 12641 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:43,841 DEBUG Processing 394/847 atomic regions from SNP 118094 to 118694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:43,951 DEBUG Processing 42/741 atomic regions from SNP 12341 to 12942 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,094 DEBUG Processing 395/847 atomic regions from SNP 118394 to 118994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,171 DEBUG Processing 43/741 atomic regions from SNP 12642 to 13243 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,348 DEBUG Processing 396/847 atomic regions from SNP 118694 to 119294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,389 DEBUG Processing 44/741 atomic regions from SNP 12943 to 13544 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,613 DEBUG Processing 45/741 atomic regions from SNP 13244 to 13845 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,619 DEBUG Processing 397/847 atomic regions from SNP 118994 to 119594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:44,834 DEBUG Processing 46/741 atomic regions from SNP 13545 to 14146 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:44,883 DEBUG Processing 398/847 atomic regions from SNP 119294 to 119894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,041 DEBUG Subchromosome time: 412.6412454210222, subchromosome SNPs: 338419 2025-01-31 09:49:45,041 DEBUG Estimated BADs: [0.69, 4.17, 1.04, 0.52, 6.25, 0.69, 4.17, 2.08, 20.84, 0.69, 2.08, 6.25, 2.08, 6.25, 1.04, 20.84, 2.08, 12.51, 2.08, 6.25, 1.04, 2.08, 0.52, 2.08, 0.42, 4.17, 2.08, 6.25, 2.08, 0.42, 2.08, 0.52, 4.17, 2.08, 8.34, 2.08, 8.34, 4.17, 20.84, 2.08, 8.34, 4.17] SNP counts: [10682, 836, 11415, 23655, 399, 4170, 11064, 8740, 120, 13043, 11270, 2826, 5051, 4657, 12503, 170, 3545, 1970, 16944, 15965, 6152, 1712, 9608, 6319, 16627, 3476, 19029, 10678, 5892, 4877, 3015, 9651, 32787, 4786, 2608, 10545, 5632, 7514, 224, 9821, 2251, 6190] SNP IDs counts: [10682, 836, 11415, 23655, 399, 4170, 11064, 8740, 120, 13043, 11270, 2826, 5051, 4657, 12503, 170, 3545, 1970, 16944, 15965, 6152, 1712, 9608, 6319, 16627, 3476, 19029, 10678, 5892, 4877, 3015, 9651, 32787, 4786, 2608, 10545, 5632, 7514, 224, 9821, 2251, 6190] Critical gap: 759921bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 9.54Mbp, 9.98Mbp, 16.62Mbp, 30.77Mbp, 31.00Mbp, 33.47Mbp, 39.40Mbp, 44.10Mbp, 44.17Mbp, 52.10Mbp, 58.39Mbp, 59.92Mbp, 62.69Mbp, 65.21Mbp, 72.22Mbp, 72.31Mbp, 74.24Mbp, 75.34Mbp, 84.84Mbp, 93.84Mbp, 97.63Mbp, 98.64Mbp, 104.47Mbp, 108.04Mbp, 118.29Mbp, 120.11Mbp, 130.71Mbp, 136.32Mbp, 139.56Mbp, 142.62Mbp, 144.45Mbp, 150.39Mbp, 168.21Mbp, 170.83Mbp, 172.27Mbp, 178.30Mbp, 181.28Mbp, 185.40Mbp, 185.52Mbp, 190.76Mbp, 191.95Mbp, 195.47Mbp] 2025-01-31 09:49:45,041 DEBUG chr1 time: 412.6420073440531 s 2025-01-31 09:49:45,047 DEBUG Processing 47/741 atomic regions from SNP 13846 to 14447 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,125 DEBUG Processing 399/847 atomic regions from SNP 119594 to 120194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,236 DEBUG chr1: Fitting background model for 42 segments 2025-01-31 09:49:45,258 DEBUG Processing 48/741 atomic regions from SNP 14147 to 14748 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,365 DEBUG Processing 400/847 atomic regions from SNP 119894 to 120494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,472 DEBUG Processing 49/741 atomic regions from SNP 14448 to 15049 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,605 DEBUG Processing 401/847 atomic regions from SNP 120194 to 120794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,730 DEBUG Processing 50/741 atomic regions from SNP 14749 to 15350 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:45,840 DEBUG Processing 402/847 atomic regions from SNP 120494 to 121094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:45,942 DEBUG Processing 51/741 atomic regions from SNP 15050 to 15651 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,073 DEBUG Processing 403/847 atomic regions from SNP 120794 to 121394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,154 DEBUG Processing 52/741 atomic regions from SNP 15351 to 15952 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,303 DEBUG Processing 404/847 atomic regions from SNP 121094 to 121694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,375 DEBUG Processing 53/741 atomic regions from SNP 15652 to 16253 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,529 DEBUG Processing 405/847 atomic regions from SNP 121394 to 121994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,593 DEBUG Processing 54/741 atomic regions from SNP 15953 to 16554 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,752 DEBUG Processing 406/847 atomic regions from SNP 121694 to 122294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:46,803 DEBUG Processing 55/741 atomic regions from SNP 16254 to 16855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:46,986 DEBUG Processing 407/847 atomic regions from SNP 121994 to 122594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,017 DEBUG Processing 56/741 atomic regions from SNP 16555 to 17156 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,111 DEBUG Segmenting atomic regions: 2025-01-31 09:49:47,213 DEBUG Processing 1/727 atomic regions from SNP 0 to 601 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,223 DEBUG Processing 408/847 atomic regions from SNP 122294 to 122894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,254 DEBUG Processing 57/741 atomic regions from SNP 16856 to 17457 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,446 DEBUG Processing 2/727 atomic regions from SNP 301 to 902 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,462 DEBUG Processing 409/847 atomic regions from SNP 122594 to 123194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,498 DEBUG Processing 58/741 atomic regions from SNP 17157 to 17758 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,690 DEBUG Processing 3/727 atomic regions from SNP 602 to 1203 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,701 DEBUG Processing 410/847 atomic regions from SNP 122894 to 123494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,720 DEBUG Processing 59/741 atomic regions from SNP 17458 to 18059 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:47,943 DEBUG Processing 4/727 atomic regions from SNP 903 to 1504 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:47,945 DEBUG Processing 411/847 atomic regions from SNP 123194 to 123794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:47,949 DEBUG Processing 60/741 atomic regions from SNP 17759 to 18360 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,178 DEBUG Processing 5/727 atomic regions from SNP 1204 to 1805 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,185 DEBUG Processing 61/741 atomic regions from SNP 18060 to 18661 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,195 DEBUG Processing 412/847 atomic regions from SNP 123494 to 124094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,405 DEBUG Processing 6/727 atomic regions from SNP 1505 to 2106 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,410 DEBUG Processing 62/741 atomic regions from SNP 18361 to 18962 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,435 DEBUG Processing 413/847 atomic regions from SNP 123794 to 124394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,632 DEBUG Processing 63/741 atomic regions from SNP 18662 to 19263 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,636 DEBUG Processing 7/727 atomic regions from SNP 1806 to 2407 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,669 DEBUG Processing 414/847 atomic regions from SNP 124094 to 124694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:48,883 DEBUG Processing 8/727 atomic regions from SNP 2107 to 2708 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:48,883 DEBUG Processing 64/741 atomic regions from SNP 18963 to 19564 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:48,908 DEBUG Processing 415/847 atomic regions from SNP 124394 to 124994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,102 DEBUG Processing 9/727 atomic regions from SNP 2408 to 3009 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,102 DEBUG Processing 65/741 atomic regions from SNP 19264 to 19865 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,143 DEBUG Processing 416/847 atomic regions from SNP 124694 to 125294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,322 DEBUG Processing 10/727 atomic regions from SNP 2709 to 3310 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,323 DEBUG Processing 66/741 atomic regions from SNP 19565 to 20166 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,375 DEBUG Processing 417/847 atomic regions from SNP 124994 to 125594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,544 DEBUG Processing 11/727 atomic regions from SNP 3010 to 3611 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,546 DEBUG Processing 67/741 atomic regions from SNP 19866 to 20467 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,608 DEBUG Processing 418/847 atomic regions from SNP 125294 to 125894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,764 DEBUG Processing 12/727 atomic regions from SNP 3311 to 3912 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,769 DEBUG Processing 68/741 atomic regions from SNP 20167 to 20768 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:49,847 DEBUG Processing 419/847 atomic regions from SNP 125594 to 126194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:49,985 DEBUG Processing 13/727 atomic regions from SNP 3612 to 4213 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:49,989 DEBUG Processing 69/741 atomic regions from SNP 20468 to 21069 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,082 DEBUG Processing 420/847 atomic regions from SNP 125894 to 126494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,208 DEBUG Processing 14/727 atomic regions from SNP 3913 to 4514 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,214 DEBUG Processing 70/741 atomic regions from SNP 20769 to 21370 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,315 DEBUG Processing 421/847 atomic regions from SNP 126194 to 126794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,431 DEBUG Processing 15/727 atomic regions from SNP 4214 to 4815 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,438 DEBUG Processing 71/741 atomic regions from SNP 21070 to 21671 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,543 DEBUG Processing 422/847 atomic regions from SNP 126494 to 127094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,650 DEBUG Processing 16/727 atomic regions from SNP 4515 to 5116 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,659 DEBUG Processing 72/741 atomic regions from SNP 21371 to 21972 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:50,772 DEBUG Processing 423/847 atomic regions from SNP 126794 to 127394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:50,873 DEBUG Processing 17/727 atomic regions from SNP 4816 to 5417 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:50,883 DEBUG Processing 73/741 atomic regions from SNP 21672 to 22273 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,004 DEBUG Processing 424/847 atomic regions from SNP 127094 to 127694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,096 DEBUG Processing 18/727 atomic regions from SNP 5117 to 5718 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,104 DEBUG Processing 74/741 atomic regions from SNP 21973 to 22574 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,235 DEBUG Processing 425/847 atomic regions from SNP 127394 to 127994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,316 DEBUG Processing 19/727 atomic regions from SNP 5418 to 6019 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,327 DEBUG Processing 75/741 atomic regions from SNP 22274 to 22875 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,468 DEBUG Processing 426/847 atomic regions from SNP 127694 to 128294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,542 DEBUG Processing 20/727 atomic regions from SNP 5719 to 6320 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,553 DEBUG Processing 76/741 atomic regions from SNP 22575 to 23176 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,699 DEBUG Processing 427/847 atomic regions from SNP 127994 to 128594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,771 DEBUG Processing 21/727 atomic regions from SNP 6020 to 6621 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,776 DEBUG Processing 77/741 atomic regions from SNP 22876 to 23477 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:51,934 DEBUG Processing 428/847 atomic regions from SNP 128294 to 128894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:51,991 DEBUG Processing 22/727 atomic regions from SNP 6321 to 6922 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:51,995 DEBUG Processing 78/741 atomic regions from SNP 23177 to 23778 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,176 DEBUG Processing 429/847 atomic regions from SNP 128594 to 129194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,212 DEBUG Processing 23/727 atomic regions from SNP 6622 to 7223 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,217 DEBUG Processing 79/741 atomic regions from SNP 23478 to 24079 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,420 DEBUG Processing 430/847 atomic regions from SNP 128894 to 129494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,437 DEBUG Processing 24/727 atomic regions from SNP 6923 to 7524 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,442 DEBUG Processing 80/741 atomic regions from SNP 23779 to 24380 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,659 DEBUG Processing 431/847 atomic regions from SNP 129194 to 129794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:52,664 DEBUG Processing 25/727 atomic regions from SNP 7224 to 7825 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,667 DEBUG Processing 81/741 atomic regions from SNP 24080 to 24681 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,886 DEBUG Processing 26/727 atomic regions from SNP 7525 to 8126 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:52,889 DEBUG Processing 82/741 atomic regions from SNP 24381 to 24982 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:52,896 DEBUG Processing 432/847 atomic regions from SNP 129494 to 130094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,110 DEBUG Processing 27/727 atomic regions from SNP 7826 to 8427 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,114 DEBUG Processing 83/741 atomic regions from SNP 24682 to 25283 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,135 DEBUG Processing 433/847 atomic regions from SNP 129794 to 130394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,340 DEBUG Processing 28/727 atomic regions from SNP 8127 to 8728 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,346 DEBUG Processing 84/741 atomic regions from SNP 24983 to 25584 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,377 DEBUG Processing 434/847 atomic regions from SNP 130094 to 130694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,577 DEBUG Processing 29/727 atomic regions from SNP 8428 to 9029 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,581 DEBUG Processing 85/741 atomic regions from SNP 25284 to 25885 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,621 DEBUG Processing 435/847 atomic regions from SNP 130394 to 130994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:53,800 DEBUG Processing 30/727 atomic regions from SNP 8729 to 9330 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:53,805 DEBUG Processing 86/741 atomic regions from SNP 25585 to 26186 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:53,862 DEBUG Processing 436/847 atomic regions from SNP 130694 to 131294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,019 DEBUG Processing 31/727 atomic regions from SNP 9030 to 9631 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,026 DEBUG Processing 87/741 atomic regions from SNP 25886 to 26487 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,099 DEBUG Processing 437/847 atomic regions from SNP 130994 to 131594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,236 DEBUG Processing 32/727 atomic regions from SNP 9331 to 9932 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,244 DEBUG Processing 88/741 atomic regions from SNP 26187 to 26788 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,332 DEBUG Processing 438/847 atomic regions from SNP 131294 to 131894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,457 DEBUG Processing 33/727 atomic regions from SNP 9632 to 10233 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,472 DEBUG Processing 89/741 atomic regions from SNP 26488 to 27089 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,572 DEBUG Processing 439/847 atomic regions from SNP 131594 to 132194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,677 DEBUG Processing 34/727 atomic regions from SNP 9933 to 10534 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,694 DEBUG Processing 90/741 atomic regions from SNP 26789 to 27390 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:54,809 DEBUG Processing 440/847 atomic regions from SNP 131894 to 132494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:54,888 DEBUG Processing 35/727 atomic regions from SNP 10234 to 10835 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:54,906 DEBUG Processing 91/741 atomic regions from SNP 27090 to 27691 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,051 DEBUG Processing 441/847 atomic regions from SNP 132194 to 132794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,111 DEBUG Processing 36/727 atomic regions from SNP 10535 to 11136 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,122 DEBUG Processing 92/741 atomic regions from SNP 27391 to 27992 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,295 DEBUG Processing 442/847 atomic regions from SNP 132494 to 133094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,344 DEBUG Processing 37/727 atomic regions from SNP 10836 to 11437 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,367 DEBUG Processing 93/741 atomic regions from SNP 27692 to 28293 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,537 DEBUG Processing 443/847 atomic regions from SNP 132794 to 133394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,581 DEBUG Processing 38/727 atomic regions from SNP 11137 to 11738 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,597 DEBUG Processing 94/741 atomic regions from SNP 27993 to 28594 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:55,783 DEBUG Processing 444/847 atomic regions from SNP 133094 to 133694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:55,813 DEBUG Processing 39/727 atomic regions from SNP 11438 to 12039 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:55,830 DEBUG Processing 95/741 atomic regions from SNP 28294 to 28895 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,020 DEBUG Processing 445/847 atomic regions from SNP 133394 to 133994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,042 DEBUG Processing 40/727 atomic regions from SNP 11739 to 12340 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,055 DEBUG Processing 96/741 atomic regions from SNP 28595 to 29196 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,265 DEBUG Processing 446/847 atomic regions from SNP 133694 to 134294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,270 DEBUG Processing 41/727 atomic regions from SNP 12040 to 12641 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,288 DEBUG Processing 97/741 atomic regions from SNP 28896 to 29497 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,516 DEBUG Processing 42/727 atomic regions from SNP 12341 to 12942 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,527 DEBUG Processing 447/847 atomic regions from SNP 133994 to 134594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,544 DEBUG Processing 98/741 atomic regions from SNP 29197 to 29798 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,745 DEBUG Processing 43/727 atomic regions from SNP 12642 to 13243 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:56,779 DEBUG Processing 448/847 atomic regions from SNP 134294 to 134894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:56,783 DEBUG Processing 99/741 atomic regions from SNP 29498 to 30099 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:56,966 DEBUG Processing 44/727 atomic regions from SNP 12943 to 13544 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,021 DEBUG Processing 449/847 atomic regions from SNP 134594 to 135194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,023 DEBUG Processing 100/741 atomic regions from SNP 29799 to 30400 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,210 DEBUG Processing 45/727 atomic regions from SNP 13244 to 13845 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,267 DEBUG Processing 450/847 atomic regions from SNP 134894 to 135494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,280 DEBUG Processing 101/741 atomic regions from SNP 30100 to 30701 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,430 DEBUG Processing 46/727 atomic regions from SNP 13545 to 14146 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,505 DEBUG Processing 451/847 atomic regions from SNP 135194 to 135794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,508 DEBUG Processing 102/741 atomic regions from SNP 30401 to 31002 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,656 DEBUG Processing 47/727 atomic regions from SNP 13846 to 14447 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,739 DEBUG Processing 103/741 atomic regions from SNP 30702 to 31303 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:57,749 DEBUG Processing 452/847 atomic regions from SNP 135494 to 136094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:57,919 DEBUG Processing 48/727 atomic regions from SNP 14147 to 14748 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:57,978 DEBUG Processing 104/741 atomic regions from SNP 31003 to 31604 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,009 DEBUG Processing 453/847 atomic regions from SNP 135794 to 136394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,178 DEBUG Processing 49/727 atomic regions from SNP 14448 to 15049 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,204 DEBUG Processing 105/741 atomic regions from SNP 31304 to 31905 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,256 DEBUG Processing 454/847 atomic regions from SNP 136094 to 136694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,398 DEBUG Processing 50/727 atomic regions from SNP 14749 to 15350 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,430 DEBUG Processing 106/741 atomic regions from SNP 31605 to 32206 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,513 DEBUG Processing 455/847 atomic regions from SNP 136394 to 136994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,633 DEBUG Processing 51/727 atomic regions from SNP 15050 to 15651 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,667 DEBUG Processing 107/741 atomic regions from SNP 31906 to 32507 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:58,762 DEBUG Processing 456/847 atomic regions from SNP 136694 to 137294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:58,871 DEBUG Processing 52/727 atomic regions from SNP 15351 to 15952 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:58,905 DEBUG Processing 108/741 atomic regions from SNP 32207 to 32808 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,041 DEBUG Processing 457/847 atomic regions from SNP 136994 to 137594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,104 DEBUG Processing 53/727 atomic regions from SNP 15652 to 16253 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,152 DEBUG Processing 109/741 atomic regions from SNP 32508 to 33109 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,325 DEBUG Processing 458/847 atomic regions from SNP 137294 to 137894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,339 DEBUG Processing 54/727 atomic regions from SNP 15953 to 16554 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,386 DEBUG Processing 110/741 atomic regions from SNP 32809 to 33410 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,584 DEBUG Processing 55/727 atomic regions from SNP 16254 to 16855 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,615 DEBUG Processing 459/847 atomic regions from SNP 137594 to 138194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:49:59,622 DEBUG Processing 111/741 atomic regions from SNP 33110 to 33711 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,820 DEBUG Processing 56/727 atomic regions from SNP 16555 to 17156 for chr8 (subchromosome 1 of 1). 2025-01-31 09:49:59,862 DEBUG Processing 112/741 atomic regions from SNP 33411 to 34012 for chr10 (subchromosome 1 of 1). 2025-01-31 09:49:59,899 DEBUG Processing 460/847 atomic regions from SNP 137894 to 138494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,057 DEBUG Processing 57/727 atomic regions from SNP 16856 to 17457 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,097 DEBUG Processing 113/741 atomic regions from SNP 33712 to 34313 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,166 DEBUG Processing 461/847 atomic regions from SNP 138194 to 138794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,317 DEBUG Processing 58/727 atomic regions from SNP 17157 to 17758 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,332 DEBUG Processing 114/741 atomic regions from SNP 34013 to 34614 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,430 DEBUG Processing 462/847 atomic regions from SNP 138494 to 139094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,576 DEBUG Processing 115/741 atomic regions from SNP 34314 to 34915 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,591 DEBUG Processing 59/727 atomic regions from SNP 17458 to 18059 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,691 DEBUG Processing 463/847 atomic regions from SNP 138794 to 139394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:00,832 DEBUG Processing 116/741 atomic regions from SNP 34615 to 35216 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:00,875 DEBUG Processing 60/727 atomic regions from SNP 17759 to 18360 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:00,950 DEBUG Processing 464/847 atomic regions from SNP 139094 to 139694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,070 DEBUG Processing 117/741 atomic regions from SNP 34916 to 35517 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,122 DEBUG Processing 61/727 atomic regions from SNP 18060 to 18661 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,214 DEBUG Processing 465/847 atomic regions from SNP 139394 to 139994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,316 DEBUG Processing 118/741 atomic regions from SNP 35217 to 35818 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,373 DEBUG Processing 62/727 atomic regions from SNP 18361 to 18962 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,476 DEBUG Processing 466/847 atomic regions from SNP 139694 to 140294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,541 DEBUG Segmenting atomic regions: 2025-01-31 09:50:01,570 DEBUG Processing 119/741 atomic regions from SNP 35518 to 36119 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,645 DEBUG Processing 63/727 atomic regions from SNP 18662 to 19263 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,661 DEBUG Processing 1/698 atomic regions from SNP 0 to 601 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:01,739 DEBUG Processing 467/847 atomic regions from SNP 139994 to 140594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:01,813 DEBUG Processing 120/741 atomic regions from SNP 35819 to 36420 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:01,894 DEBUG Processing 64/727 atomic regions from SNP 18963 to 19564 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:01,923 DEBUG Processing 2/698 atomic regions from SNP 301 to 902 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,006 DEBUG Processing 468/847 atomic regions from SNP 140294 to 140894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,065 DEBUG Processing 121/741 atomic regions from SNP 36120 to 36721 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,138 DEBUG Processing 65/727 atomic regions from SNP 19264 to 19865 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,182 DEBUG Processing 3/698 atomic regions from SNP 602 to 1203 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,277 DEBUG Processing 469/847 atomic regions from SNP 140594 to 141194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,317 DEBUG Processing 122/741 atomic regions from SNP 36421 to 37022 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,384 DEBUG Processing 66/727 atomic regions from SNP 19565 to 20166 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,431 DEBUG Processing 4/698 atomic regions from SNP 903 to 1504 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,539 DEBUG Processing 470/847 atomic regions from SNP 140894 to 141494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,575 DEBUG Processing 123/741 atomic regions from SNP 36722 to 37323 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,638 DEBUG Processing 67/727 atomic regions from SNP 19866 to 20467 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,687 DEBUG Processing 5/698 atomic regions from SNP 1204 to 1805 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:02,822 DEBUG Processing 471/847 atomic regions from SNP 141194 to 141794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:02,830 DEBUG Processing 124/741 atomic regions from SNP 37023 to 37624 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:02,894 DEBUG Processing 68/727 atomic regions from SNP 20167 to 20768 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:02,963 DEBUG Processing 6/698 atomic regions from SNP 1505 to 2106 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,084 DEBUG Processing 125/741 atomic regions from SNP 37324 to 37925 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,118 DEBUG Processing 472/847 atomic regions from SNP 141494 to 142094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,175 DEBUG Processing 69/727 atomic regions from SNP 20468 to 21069 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,255 DEBUG Processing 7/698 atomic regions from SNP 1806 to 2407 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,341 DEBUG Processing 126/741 atomic regions from SNP 37625 to 38226 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,383 DEBUG Processing 473/847 atomic regions from SNP 141794 to 142394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,443 DEBUG Processing 70/727 atomic regions from SNP 20769 to 21370 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,527 DEBUG Processing 8/698 atomic regions from SNP 2107 to 2708 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,593 DEBUG Processing 127/741 atomic regions from SNP 37926 to 38527 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,672 DEBUG Processing 474/847 atomic regions from SNP 142094 to 142694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:03,696 DEBUG Processing 71/727 atomic regions from SNP 21070 to 21671 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,802 DEBUG Processing 9/698 atomic regions from SNP 2408 to 3009 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:03,842 DEBUG Processing 128/741 atomic regions from SNP 38227 to 38828 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:03,947 DEBUG Processing 72/727 atomic regions from SNP 21371 to 21972 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:03,958 DEBUG Processing 475/847 atomic regions from SNP 142394 to 142994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,093 DEBUG Processing 129/741 atomic regions from SNP 38528 to 39129 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,107 DEBUG Processing 10/698 atomic regions from SNP 2709 to 3310 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,200 DEBUG Processing 73/727 atomic regions from SNP 21672 to 22273 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,229 DEBUG Processing 476/847 atomic regions from SNP 142694 to 143294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,342 DEBUG Processing 130/741 atomic regions from SNP 38829 to 39430 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,390 DEBUG Processing 11/698 atomic regions from SNP 3010 to 3611 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,446 DEBUG Processing 74/727 atomic regions from SNP 21973 to 22574 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,518 DEBUG Processing 477/847 atomic regions from SNP 142994 to 143594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,594 DEBUG Processing 131/741 atomic regions from SNP 39130 to 39731 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,684 DEBUG Processing 12/698 atomic regions from SNP 3311 to 3912 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:04,703 DEBUG Processing 75/727 atomic regions from SNP 22274 to 22875 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,827 DEBUG Processing 478/847 atomic regions from SNP 143294 to 143894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:04,837 DEBUG Processing 132/741 atomic regions from SNP 39431 to 40032 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:04,952 DEBUG Processing 76/727 atomic regions from SNP 22575 to 23176 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:04,956 DEBUG Processing 13/698 atomic regions from SNP 3612 to 4213 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,083 DEBUG Processing 133/741 atomic regions from SNP 39732 to 40333 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,121 DEBUG Processing 479/847 atomic regions from SNP 143594 to 144194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,199 DEBUG Processing 77/727 atomic regions from SNP 22876 to 23477 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,235 DEBUG Processing 14/698 atomic regions from SNP 3913 to 4514 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,335 DEBUG Processing 134/741 atomic regions from SNP 40033 to 40634 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,408 DEBUG Processing 480/847 atomic regions from SNP 143894 to 144494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,446 DEBUG Processing 78/727 atomic regions from SNP 23177 to 23778 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,511 DEBUG Processing 15/698 atomic regions from SNP 4214 to 4815 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,588 DEBUG Processing 135/741 atomic regions from SNP 40334 to 40935 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,689 DEBUG Processing 481/847 atomic regions from SNP 144194 to 144794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:05,692 DEBUG Processing 79/727 atomic regions from SNP 23478 to 24079 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,777 DEBUG Processing 16/698 atomic regions from SNP 4515 to 5116 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:05,841 DEBUG Processing 136/741 atomic regions from SNP 40635 to 41236 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:05,947 DEBUG Processing 80/727 atomic regions from SNP 23779 to 24380 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:05,982 DEBUG Processing 482/847 atomic regions from SNP 144494 to 145094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,026 DEBUG Processing 17/698 atomic regions from SNP 4816 to 5417 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,088 DEBUG Processing 137/741 atomic regions from SNP 40936 to 41537 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,188 DEBUG Processing 81/727 atomic regions from SNP 24080 to 24681 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,247 DEBUG Processing 483/847 atomic regions from SNP 144794 to 145394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,276 DEBUG Processing 18/698 atomic regions from SNP 5117 to 5718 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,341 DEBUG Processing 138/741 atomic regions from SNP 41237 to 41838 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,434 DEBUG Processing 82/727 atomic regions from SNP 24381 to 24982 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,507 DEBUG Processing 484/847 atomic regions from SNP 145094 to 145694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,527 DEBUG Processing 19/698 atomic regions from SNP 5418 to 6019 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,594 DEBUG Processing 139/741 atomic regions from SNP 41538 to 42139 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,685 DEBUG Processing 83/727 atomic regions from SNP 24682 to 25283 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:06,777 DEBUG Processing 20/698 atomic regions from SNP 5719 to 6320 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:06,783 DEBUG Processing 485/847 atomic regions from SNP 145394 to 145994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:06,837 DEBUG Processing 140/741 atomic regions from SNP 41839 to 42440 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:06,922 DEBUG Processing 84/727 atomic regions from SNP 24983 to 25584 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,019 DEBUG Processing 21/698 atomic regions from SNP 6020 to 6621 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,067 DEBUG Processing 486/847 atomic regions from SNP 145694 to 146294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,077 DEBUG Processing 141/741 atomic regions from SNP 42140 to 42741 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,177 DEBUG Processing 85/727 atomic regions from SNP 25284 to 25885 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,306 DEBUG Processing 22/698 atomic regions from SNP 6321 to 6922 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,325 DEBUG Processing 142/741 atomic regions from SNP 42441 to 43042 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,353 DEBUG Processing 487/847 atomic regions from SNP 145994 to 146594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,423 DEBUG Processing 86/727 atomic regions from SNP 25585 to 26186 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,566 DEBUG Processing 143/741 atomic regions from SNP 42742 to 43343 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,591 DEBUG Processing 23/698 atomic regions from SNP 6622 to 7223 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,638 DEBUG Processing 488/847 atomic regions from SNP 146294 to 146894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,672 DEBUG Processing 87/727 atomic regions from SNP 25886 to 26487 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:07,808 DEBUG Processing 144/741 atomic regions from SNP 43043 to 43644 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:07,870 DEBUG Processing 24/698 atomic regions from SNP 6923 to 7524 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:07,917 DEBUG Processing 489/847 atomic regions from SNP 146594 to 147194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:07,922 DEBUG Processing 88/727 atomic regions from SNP 26187 to 26788 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,053 DEBUG Processing 145/741 atomic regions from SNP 43344 to 43945 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,154 DEBUG Processing 25/698 atomic regions from SNP 7224 to 7825 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,167 DEBUG Processing 89/727 atomic regions from SNP 26488 to 27089 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,188 DEBUG Processing 490/847 atomic regions from SNP 146894 to 147494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,298 DEBUG Processing 146/741 atomic regions from SNP 43645 to 44246 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,412 DEBUG Processing 90/727 atomic regions from SNP 26789 to 27390 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,416 DEBUG Processing 26/698 atomic regions from SNP 7525 to 8126 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,465 DEBUG Processing 491/847 atomic regions from SNP 147194 to 147794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,543 DEBUG Processing 147/741 atomic regions from SNP 43946 to 44547 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,663 DEBUG Processing 91/727 atomic regions from SNP 27090 to 27691 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,672 DEBUG Processing 27/698 atomic regions from SNP 7826 to 8427 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:08,769 DEBUG Processing 492/847 atomic regions from SNP 147494 to 148094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:08,794 DEBUG Processing 148/741 atomic regions from SNP 44247 to 44848 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:08,928 DEBUG Processing 92/727 atomic regions from SNP 27391 to 27992 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:08,947 DEBUG Processing 28/698 atomic regions from SNP 8127 to 8728 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,039 DEBUG Processing 149/741 atomic regions from SNP 44548 to 45149 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,086 DEBUG Processing 493/847 atomic regions from SNP 147794 to 148394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,173 DEBUG Processing 93/727 atomic regions from SNP 27692 to 28293 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,228 DEBUG Processing 29/698 atomic regions from SNP 8428 to 9029 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,286 DEBUG Processing 150/741 atomic regions from SNP 44849 to 45450 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,356 DEBUG Processing 494/847 atomic regions from SNP 148094 to 148694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,410 DEBUG Processing 94/727 atomic regions from SNP 27993 to 28594 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,498 DEBUG Processing 30/698 atomic regions from SNP 8729 to 9330 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,525 DEBUG Processing 151/741 atomic regions from SNP 45150 to 45751 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,621 DEBUG Processing 495/847 atomic regions from SNP 148394 to 148994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,657 DEBUG Processing 95/727 atomic regions from SNP 28294 to 28895 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:09,763 DEBUG Processing 31/698 atomic regions from SNP 9030 to 9631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:09,764 DEBUG Processing 152/741 atomic regions from SNP 45451 to 46052 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:09,897 DEBUG Processing 496/847 atomic regions from SNP 148694 to 149294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:09,904 DEBUG Processing 96/727 atomic regions from SNP 28595 to 29196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,000 DEBUG Processing 153/741 atomic regions from SNP 45752 to 46353 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,040 DEBUG Processing 32/698 atomic regions from SNP 9331 to 9932 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,158 DEBUG Processing 97/727 atomic regions from SNP 28896 to 29496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,169 DEBUG Processing 497/847 atomic regions from SNP 148994 to 149594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,241 DEBUG Processing 154/741 atomic regions from SNP 46053 to 46654 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,317 DEBUG Processing 33/698 atomic regions from SNP 9632 to 10233 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,402 DEBUG Processing 98/727 atomic regions from SNP 29196 to 29796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,435 DEBUG Processing 498/847 atomic regions from SNP 149294 to 149894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,479 DEBUG Processing 155/741 atomic regions from SNP 46354 to 46955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,590 DEBUG Processing 34/698 atomic regions from SNP 9933 to 10534 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,656 DEBUG Processing 99/727 atomic regions from SNP 29496 to 30096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,701 DEBUG Processing 499/847 atomic regions from SNP 149594 to 150194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,721 DEBUG Processing 156/741 atomic regions from SNP 46655 to 47256 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:10,874 DEBUG Processing 35/698 atomic regions from SNP 10234 to 10835 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:10,911 DEBUG Processing 100/727 atomic regions from SNP 29796 to 30396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:10,967 DEBUG Processing 500/847 atomic regions from SNP 149894 to 150494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:10,968 DEBUG Processing 157/741 atomic regions from SNP 46956 to 47557 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,131 DEBUG Processing 36/698 atomic regions from SNP 10535 to 11136 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,195 DEBUG Processing 101/727 atomic regions from SNP 30096 to 30696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,221 DEBUG Processing 158/741 atomic regions from SNP 47257 to 47858 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,243 DEBUG Processing 501/847 atomic regions from SNP 150194 to 150794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,371 DEBUG Processing 37/698 atomic regions from SNP 10836 to 11437 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,463 DEBUG Processing 102/727 atomic regions from SNP 30396 to 30996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,483 DEBUG Processing 159/741 atomic regions from SNP 47558 to 48159 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,526 DEBUG Processing 502/847 atomic regions from SNP 150494 to 151094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,641 DEBUG Processing 38/698 atomic regions from SNP 11137 to 11738 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,733 DEBUG Processing 160/741 atomic regions from SNP 47859 to 48460 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,734 DEBUG Processing 103/727 atomic regions from SNP 30696 to 31296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:11,817 DEBUG Processing 503/847 atomic regions from SNP 150794 to 151394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:11,899 DEBUG Processing 39/698 atomic regions from SNP 11438 to 12039 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:11,986 DEBUG Processing 161/741 atomic regions from SNP 48160 to 48761 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:11,995 DEBUG Processing 104/727 atomic regions from SNP 30996 to 31596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,096 DEBUG Processing 504/847 atomic regions from SNP 151094 to 151694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,171 DEBUG Processing 40/698 atomic regions from SNP 11739 to 12340 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,243 DEBUG Processing 162/741 atomic regions from SNP 48461 to 49062 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,279 DEBUG Processing 105/727 atomic regions from SNP 31296 to 31896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,373 DEBUG Processing 505/847 atomic regions from SNP 151394 to 151994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,462 DEBUG Processing 41/698 atomic regions from SNP 12040 to 12641 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,503 DEBUG Processing 163/741 atomic regions from SNP 48762 to 49363 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,563 DEBUG Processing 106/727 atomic regions from SNP 31596 to 32196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,667 DEBUG Processing 506/847 atomic regions from SNP 151694 to 152294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:12,754 DEBUG Processing 42/698 atomic regions from SNP 12341 to 12942 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:12,758 DEBUG Processing 164/741 atomic regions from SNP 49063 to 49664 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:12,846 DEBUG Processing 107/727 atomic regions from SNP 31896 to 32496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:12,960 DEBUG Processing 507/847 atomic regions from SNP 151994 to 152594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,026 DEBUG Processing 165/741 atomic regions from SNP 49364 to 49965 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,061 DEBUG Processing 43/698 atomic regions from SNP 12642 to 13243 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,126 DEBUG Processing 108/727 atomic regions from SNP 32196 to 32796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,239 DEBUG Processing 508/847 atomic regions from SNP 152294 to 152894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,283 DEBUG Processing 166/741 atomic regions from SNP 49665 to 50266 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,342 DEBUG Processing 44/698 atomic regions from SNP 12943 to 13544 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,380 DEBUG Processing 109/727 atomic regions from SNP 32496 to 33096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,527 DEBUG Processing 509/847 atomic regions from SNP 152594 to 153194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,536 DEBUG Processing 167/741 atomic regions from SNP 49966 to 50567 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,619 DEBUG Processing 45/698 atomic regions from SNP 13244 to 13845 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,634 DEBUG Processing 110/727 atomic regions from SNP 32796 to 33396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:13,784 DEBUG Processing 168/741 atomic regions from SNP 50267 to 50868 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:13,808 DEBUG Processing 510/847 atomic regions from SNP 152894 to 153494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:13,878 DEBUG Processing 46/698 atomic regions from SNP 13545 to 14146 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:13,885 DEBUG Processing 111/727 atomic regions from SNP 33096 to 33696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,026 DEBUG Processing 169/741 atomic regions from SNP 50568 to 51169 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,071 DEBUG Processing 511/847 atomic regions from SNP 153194 to 153794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,132 DEBUG Processing 47/698 atomic regions from SNP 13846 to 14447 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,132 DEBUG Processing 112/727 atomic regions from SNP 33396 to 33996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,273 DEBUG Processing 170/741 atomic regions from SNP 50869 to 51470 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,353 DEBUG Processing 512/847 atomic regions from SNP 153494 to 154094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,382 DEBUG Processing 113/727 atomic regions from SNP 33696 to 34296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,386 DEBUG Processing 48/698 atomic regions from SNP 14147 to 14748 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,526 DEBUG Processing 171/741 atomic regions from SNP 51170 to 51771 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,638 DEBUG Processing 114/727 atomic regions from SNP 33996 to 34596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,639 DEBUG Processing 513/847 atomic regions from SNP 153794 to 154394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:14,646 DEBUG Processing 49/698 atomic regions from SNP 14448 to 15049 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,772 DEBUG Processing 172/741 atomic regions from SNP 51471 to 52072 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:14,889 DEBUG Processing 115/727 atomic regions from SNP 34296 to 34896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:14,903 DEBUG Processing 50/698 atomic regions from SNP 14749 to 15350 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:14,903 DEBUG Processing 514/847 atomic regions from SNP 154094 to 154694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,017 DEBUG Processing 173/741 atomic regions from SNP 51772 to 52373 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,140 DEBUG Processing 116/727 atomic regions from SNP 34596 to 35196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,169 DEBUG Processing 515/847 atomic regions from SNP 154394 to 154994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,176 DEBUG Processing 51/698 atomic regions from SNP 15050 to 15651 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,262 DEBUG Processing 174/741 atomic regions from SNP 52073 to 52674 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,388 DEBUG Processing 117/727 atomic regions from SNP 34896 to 35496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,433 DEBUG Processing 516/847 atomic regions from SNP 154694 to 155294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,436 DEBUG Processing 52/698 atomic regions from SNP 15351 to 15952 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,513 DEBUG Processing 175/741 atomic regions from SNP 52374 to 52975 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,639 DEBUG Processing 118/727 atomic regions from SNP 35196 to 35796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,701 DEBUG Processing 53/698 atomic regions from SNP 15652 to 16253 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:15,705 DEBUG Processing 517/847 atomic regions from SNP 154994 to 155594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,775 DEBUG Processing 176/741 atomic regions from SNP 52675 to 53276 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:15,914 DEBUG Processing 119/727 atomic regions from SNP 35496 to 36096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:15,970 DEBUG Processing 518/847 atomic regions from SNP 155294 to 155894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:15,979 DEBUG Processing 54/698 atomic regions from SNP 15953 to 16554 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,025 DEBUG Processing 177/741 atomic regions from SNP 52976 to 53577 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,166 DEBUG Processing 120/727 atomic regions from SNP 35796 to 36396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,236 DEBUG Processing 519/847 atomic regions from SNP 155594 to 156194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,258 DEBUG Processing 55/698 atomic regions from SNP 16254 to 16855 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,271 DEBUG Processing 178/741 atomic regions from SNP 53277 to 53878 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,421 DEBUG Processing 121/727 atomic regions from SNP 36096 to 36696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,503 DEBUG Processing 520/847 atomic regions from SNP 155894 to 156494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,515 DEBUG Processing 56/698 atomic regions from SNP 16555 to 17156 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,523 DEBUG Processing 179/741 atomic regions from SNP 53578 to 54179 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,706 DEBUG Processing 122/727 atomic regions from SNP 36396 to 36996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:16,779 DEBUG Processing 521/847 atomic regions from SNP 156194 to 156794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:16,783 DEBUG Processing 57/698 atomic regions from SNP 16856 to 17457 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:16,785 DEBUG Processing 180/741 atomic regions from SNP 53879 to 54480 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:16,987 DEBUG Processing 123/727 atomic regions from SNP 36696 to 37296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,043 DEBUG Processing 181/741 atomic regions from SNP 54180 to 54781 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,047 DEBUG Processing 522/847 atomic regions from SNP 156494 to 157094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,047 DEBUG Processing 58/698 atomic regions from SNP 17157 to 17758 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,248 DEBUG Processing 124/727 atomic regions from SNP 36996 to 37596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,295 DEBUG Processing 182/741 atomic regions from SNP 54481 to 55082 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,303 DEBUG Processing 59/698 atomic regions from SNP 17458 to 18059 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,314 DEBUG Processing 523/847 atomic regions from SNP 156794 to 157394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,509 DEBUG Processing 125/727 atomic regions from SNP 37296 to 37896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,557 DEBUG Processing 183/741 atomic regions from SNP 54782 to 55383 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,557 DEBUG Processing 60/698 atomic regions from SNP 17759 to 18360 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,572 DEBUG Processing 524/847 atomic regions from SNP 157094 to 157694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:17,767 DEBUG Processing 126/727 atomic regions from SNP 37596 to 38196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:17,804 DEBUG Processing 184/741 atomic regions from SNP 55083 to 55684 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:17,831 DEBUG Processing 61/698 atomic regions from SNP 18060 to 18661 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:17,839 DEBUG Processing 525/847 atomic regions from SNP 157394 to 157994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,015 DEBUG Processing 127/727 atomic regions from SNP 37896 to 38496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,054 DEBUG Processing 185/741 atomic regions from SNP 55384 to 55985 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,104 DEBUG Processing 526/847 atomic regions from SNP 157694 to 158294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,106 DEBUG Processing 62/698 atomic regions from SNP 18361 to 18962 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,262 DEBUG Processing 128/727 atomic regions from SNP 38196 to 38796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,302 DEBUG Processing 186/741 atomic regions from SNP 55685 to 56286 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,365 DEBUG Processing 527/847 atomic regions from SNP 157994 to 158594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,385 DEBUG Processing 63/698 atomic regions from SNP 18662 to 19263 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,497 DEBUG Processing 129/727 atomic regions from SNP 38496 to 39096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,544 DEBUG Processing 187/741 atomic regions from SNP 55986 to 56587 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,628 DEBUG Processing 528/847 atomic regions from SNP 158294 to 158894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:18,643 DEBUG Processing 64/698 atomic regions from SNP 18963 to 19564 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,736 DEBUG Processing 130/727 atomic regions from SNP 38796 to 39396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:18,780 DEBUG Processing 188/741 atomic regions from SNP 56287 to 56888 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:18,888 DEBUG Processing 65/698 atomic regions from SNP 19264 to 19865 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:18,899 DEBUG Processing 529/847 atomic regions from SNP 158594 to 159194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,009 DEBUG Processing 131/727 atomic regions from SNP 39096 to 39696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,024 DEBUG Processing 189/741 atomic regions from SNP 56588 to 57189 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,136 DEBUG Processing 66/698 atomic regions from SNP 19565 to 20166 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,162 DEBUG Processing 530/847 atomic regions from SNP 158894 to 159494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,268 DEBUG Processing 190/741 atomic regions from SNP 56889 to 57490 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,289 DEBUG Processing 132/727 atomic regions from SNP 39396 to 39996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,384 DEBUG Processing 67/698 atomic regions from SNP 19866 to 20467 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,428 DEBUG Processing 531/847 atomic regions from SNP 159194 to 159794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,511 DEBUG Processing 191/741 atomic regions from SNP 57190 to 57791 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,556 DEBUG Processing 133/727 atomic regions from SNP 39696 to 40296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,635 DEBUG Processing 68/698 atomic regions from SNP 20167 to 20768 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,695 DEBUG Processing 532/847 atomic regions from SNP 159494 to 160094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,755 DEBUG Processing 192/741 atomic regions from SNP 57491 to 58092 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:19,801 DEBUG Processing 134/727 atomic regions from SNP 39996 to 40596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:19,891 DEBUG Processing 69/698 atomic regions from SNP 20468 to 21069 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:19,953 DEBUG Processing 533/847 atomic regions from SNP 159794 to 160394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:19,994 DEBUG Processing 193/741 atomic regions from SNP 57792 to 58393 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,038 DEBUG Processing 135/727 atomic regions from SNP 40296 to 40896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,148 DEBUG Processing 70/698 atomic regions from SNP 20769 to 21370 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,220 DEBUG Processing 534/847 atomic regions from SNP 160094 to 160694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,243 DEBUG Processing 194/741 atomic regions from SNP 58093 to 58694 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,286 DEBUG Processing 136/727 atomic regions from SNP 40596 to 41196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,402 DEBUG Processing 71/698 atomic regions from SNP 21070 to 21671 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,480 DEBUG Processing 535/847 atomic regions from SNP 160394 to 160994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,487 DEBUG Processing 195/741 atomic regions from SNP 58394 to 58995 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,529 DEBUG Processing 137/727 atomic regions from SNP 40896 to 41496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,655 DEBUG Processing 72/698 atomic regions from SNP 21371 to 21972 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,735 DEBUG Processing 196/741 atomic regions from SNP 58695 to 59296 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:20,743 DEBUG Processing 536/847 atomic regions from SNP 160694 to 161294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:20,775 DEBUG Processing 138/727 atomic regions from SNP 41196 to 41796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:20,914 DEBUG Processing 73/698 atomic regions from SNP 21672 to 22273 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:20,984 DEBUG Processing 197/741 atomic regions from SNP 58996 to 59597 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,006 DEBUG Processing 537/847 atomic regions from SNP 160994 to 161594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,021 DEBUG Processing 139/727 atomic regions from SNP 41496 to 42096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,173 DEBUG Processing 74/698 atomic regions from SNP 21973 to 22574 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,235 DEBUG Processing 198/741 atomic regions from SNP 59297 to 59898 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,272 DEBUG Processing 538/847 atomic regions from SNP 161294 to 161894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,274 DEBUG Processing 140/727 atomic regions from SNP 41796 to 42396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,423 DEBUG Processing 75/698 atomic regions from SNP 22274 to 22875 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,480 DEBUG Processing 199/741 atomic regions from SNP 59598 to 60199 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,523 DEBUG Processing 141/727 atomic regions from SNP 42096 to 42696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,537 DEBUG Processing 539/847 atomic regions from SNP 161594 to 162194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,671 DEBUG Processing 76/698 atomic regions from SNP 22575 to 23176 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,728 DEBUG Processing 200/741 atomic regions from SNP 59899 to 60500 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:21,778 DEBUG Processing 142/727 atomic regions from SNP 42396 to 42996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:21,803 DEBUG Processing 540/847 atomic regions from SNP 161894 to 162494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:21,922 DEBUG Processing 77/698 atomic regions from SNP 22876 to 23477 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:21,972 DEBUG Processing 201/741 atomic regions from SNP 60200 to 60801 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,024 DEBUG Processing 143/727 atomic regions from SNP 42696 to 43296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,061 DEBUG Processing 541/847 atomic regions from SNP 162194 to 162794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,183 DEBUG Processing 78/698 atomic regions from SNP 23177 to 23778 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,218 DEBUG Processing 202/741 atomic regions from SNP 60501 to 61102 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,266 DEBUG Processing 144/727 atomic regions from SNP 42996 to 43596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,314 DEBUG Processing 542/847 atomic regions from SNP 162494 to 163094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,463 DEBUG Processing 79/698 atomic regions from SNP 23478 to 24079 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,464 DEBUG Processing 203/741 atomic regions from SNP 60802 to 61403 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,512 DEBUG Processing 145/727 atomic regions from SNP 43296 to 43896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,583 DEBUG Processing 543/847 atomic regions from SNP 162794 to 163394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,715 DEBUG Processing 204/741 atomic regions from SNP 61103 to 61704 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,718 DEBUG Processing 80/698 atomic regions from SNP 23779 to 24380 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:22,760 DEBUG Processing 146/727 atomic regions from SNP 43596 to 44196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:22,868 DEBUG Processing 544/847 atomic regions from SNP 163094 to 163694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:22,963 DEBUG Processing 205/741 atomic regions from SNP 61404 to 62005 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:22,973 DEBUG Processing 81/698 atomic regions from SNP 24080 to 24681 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,003 DEBUG Processing 147/727 atomic regions from SNP 43896 to 44496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,121 DEBUG Processing 545/847 atomic regions from SNP 163394 to 163994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,215 DEBUG Processing 206/741 atomic regions from SNP 61705 to 62306 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,250 DEBUG Processing 82/698 atomic regions from SNP 24381 to 24982 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,256 DEBUG Processing 148/727 atomic regions from SNP 44196 to 44796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,374 DEBUG Processing 546/847 atomic regions from SNP 163694 to 164294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,469 DEBUG Processing 207/741 atomic regions from SNP 62006 to 62607 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,508 DEBUG Processing 149/727 atomic regions from SNP 44496 to 45096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,509 DEBUG Processing 83/698 atomic regions from SNP 24682 to 25283 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,621 DEBUG Processing 547/847 atomic regions from SNP 163994 to 164594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,717 DEBUG Processing 208/741 atomic regions from SNP 62307 to 62908 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:23,758 DEBUG Processing 150/727 atomic regions from SNP 44796 to 45396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:23,770 DEBUG Processing 84/698 atomic regions from SNP 24983 to 25584 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:23,869 DEBUG Processing 548/847 atomic regions from SNP 164294 to 164894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:23,974 DEBUG Processing 209/741 atomic regions from SNP 62608 to 63209 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,015 DEBUG Processing 151/727 atomic regions from SNP 45096 to 45696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,036 DEBUG Processing 85/698 atomic regions from SNP 25284 to 25885 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,117 DEBUG Processing 549/847 atomic regions from SNP 164594 to 165194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,219 DEBUG Processing 210/741 atomic regions from SNP 62909 to 63510 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,268 DEBUG Processing 152/727 atomic regions from SNP 45396 to 45996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,298 DEBUG Processing 86/698 atomic regions from SNP 25585 to 26186 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,372 DEBUG Processing 550/847 atomic regions from SNP 164894 to 165494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,470 DEBUG Processing 211/741 atomic regions from SNP 63210 to 63811 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,523 DEBUG Processing 153/727 atomic regions from SNP 45696 to 46296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,560 DEBUG Processing 87/698 atomic regions from SNP 25886 to 26487 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,627 DEBUG Processing 551/847 atomic regions from SNP 165194 to 165794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,714 DEBUG Processing 212/741 atomic regions from SNP 63511 to 64112 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:24,786 DEBUG Processing 154/727 atomic regions from SNP 45996 to 46596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:24,829 DEBUG Processing 88/698 atomic regions from SNP 26187 to 26788 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:24,889 DEBUG Processing 552/847 atomic regions from SNP 165494 to 166094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:24,946 DEBUG Processing 213/741 atomic regions from SNP 63812 to 64413 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,030 DEBUG Processing 155/727 atomic regions from SNP 46296 to 46896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,089 DEBUG Processing 89/698 atomic regions from SNP 26488 to 27089 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,159 DEBUG Processing 553/847 atomic regions from SNP 165794 to 166394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,211 DEBUG Processing 214/741 atomic regions from SNP 64113 to 64714 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,281 DEBUG Processing 156/727 atomic regions from SNP 46596 to 47196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,344 DEBUG Processing 90/698 atomic regions from SNP 26789 to 27390 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,411 DEBUG Processing 554/847 atomic regions from SNP 166094 to 166694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,490 DEBUG Processing 215/741 atomic regions from SNP 64414 to 65015 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,527 DEBUG Processing 157/727 atomic regions from SNP 46896 to 47496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,601 DEBUG Processing 91/698 atomic regions from SNP 27090 to 27691 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,669 DEBUG Processing 555/847 atomic regions from SNP 166394 to 166994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:25,770 DEBUG Processing 216/741 atomic regions from SNP 64715 to 65316 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:25,774 DEBUG Processing 158/727 atomic regions from SNP 47196 to 47796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:25,864 DEBUG Processing 92/698 atomic regions from SNP 27391 to 27992 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:25,926 DEBUG Processing 556/847 atomic regions from SNP 166694 to 167294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,009 DEBUG Processing 217/741 atomic regions from SNP 65016 to 65617 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,016 DEBUG Processing 159/727 atomic regions from SNP 47496 to 48096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,117 DEBUG Processing 93/698 atomic regions from SNP 27692 to 28293 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,182 DEBUG Processing 557/847 atomic regions from SNP 166994 to 167594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,254 DEBUG Processing 218/741 atomic regions from SNP 65317 to 65918 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,263 DEBUG Processing 160/727 atomic regions from SNP 47796 to 48396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,385 DEBUG Processing 94/698 atomic regions from SNP 27993 to 28594 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,435 DEBUG Processing 558/847 atomic regions from SNP 167294 to 167894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,496 DEBUG Processing 219/741 atomic regions from SNP 65618 to 66219 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,512 DEBUG Processing 161/727 atomic regions from SNP 48096 to 48696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,637 DEBUG Processing 95/698 atomic regions from SNP 28294 to 28895 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,691 DEBUG Processing 559/847 atomic regions from SNP 167594 to 168194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:26,742 DEBUG Processing 220/741 atomic regions from SNP 65919 to 66520 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:26,759 DEBUG Processing 162/727 atomic regions from SNP 48396 to 48996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:26,892 DEBUG Processing 96/698 atomic regions from SNP 28595 to 29196 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:26,948 DEBUG Processing 560/847 atomic regions from SNP 167894 to 168494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,002 DEBUG Processing 221/741 atomic regions from SNP 66220 to 66821 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,002 DEBUG Processing 163/727 atomic regions from SNP 48696 to 49296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,142 DEBUG Processing 97/698 atomic regions from SNP 28896 to 29497 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,208 DEBUG Processing 561/847 atomic regions from SNP 168194 to 168794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,252 DEBUG Processing 164/727 atomic regions from SNP 48996 to 49596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,265 DEBUG Processing 222/741 atomic regions from SNP 66521 to 67122 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,392 DEBUG Processing 98/698 atomic regions from SNP 29197 to 29798 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,472 DEBUG Processing 562/847 atomic regions from SNP 168494 to 169094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,508 DEBUG Processing 165/727 atomic regions from SNP 49296 to 49896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,538 DEBUG Processing 223/741 atomic regions from SNP 66822 to 67423 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,635 DEBUG Processing 99/698 atomic regions from SNP 29498 to 30099 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,741 DEBUG Processing 563/847 atomic regions from SNP 168794 to 169394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:27,775 DEBUG Processing 166/727 atomic regions from SNP 49596 to 50196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:27,834 DEBUG Processing 224/741 atomic regions from SNP 67123 to 67724 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:27,896 DEBUG Processing 100/698 atomic regions from SNP 29799 to 30400 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:27,997 DEBUG Processing 564/847 atomic regions from SNP 169094 to 169694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,016 DEBUG Processing 167/727 atomic regions from SNP 49896 to 50496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,094 DEBUG Processing 225/741 atomic regions from SNP 67424 to 68025 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,140 DEBUG Processing 101/698 atomic regions from SNP 30100 to 30701 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,255 DEBUG Processing 565/847 atomic regions from SNP 169394 to 169994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,275 DEBUG Processing 168/727 atomic regions from SNP 50196 to 50796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,340 DEBUG Processing 226/741 atomic regions from SNP 67725 to 68326 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,384 DEBUG Processing 102/698 atomic regions from SNP 30401 to 31002 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,512 DEBUG Processing 566/847 atomic regions from SNP 169694 to 170294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,538 DEBUG Processing 169/727 atomic regions from SNP 50496 to 51096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,610 DEBUG Processing 227/741 atomic regions from SNP 68026 to 68627 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:28,628 DEBUG Processing 103/698 atomic regions from SNP 30702 to 31303 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,765 DEBUG Processing 567/847 atomic regions from SNP 169994 to 170594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:28,804 DEBUG Processing 170/727 atomic regions from SNP 50796 to 51396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:28,883 DEBUG Processing 104/698 atomic regions from SNP 31003 to 31604 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:28,898 DEBUG Processing 228/741 atomic regions from SNP 68327 to 68928 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,013 DEBUG Processing 568/847 atomic regions from SNP 170294 to 170894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,064 DEBUG Processing 171/727 atomic regions from SNP 51096 to 51696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,129 DEBUG Processing 105/698 atomic regions from SNP 31304 to 31905 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,174 DEBUG Processing 229/741 atomic regions from SNP 68628 to 69229 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,265 DEBUG Processing 569/847 atomic regions from SNP 170594 to 171194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,308 DEBUG Processing 172/727 atomic regions from SNP 51396 to 51996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,386 DEBUG Processing 106/698 atomic regions from SNP 31605 to 32206 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,450 DEBUG Processing 230/741 atomic regions from SNP 68929 to 69530 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,519 DEBUG Processing 570/847 atomic regions from SNP 170894 to 171494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,550 DEBUG Processing 173/727 atomic regions from SNP 51696 to 52296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,632 DEBUG Processing 107/698 atomic regions from SNP 31906 to 32507 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,693 DEBUG Processing 231/741 atomic regions from SNP 69230 to 69831 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:29,773 DEBUG Processing 571/847 atomic regions from SNP 171194 to 171794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:29,791 DEBUG Processing 174/727 atomic regions from SNP 51996 to 52596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:29,914 DEBUG Processing 108/698 atomic regions from SNP 32207 to 32808 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:29,935 DEBUG Processing 232/741 atomic regions from SNP 69531 to 70132 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,021 DEBUG Processing 572/847 atomic regions from SNP 171494 to 172094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,022 DEBUG Processing 175/727 atomic regions from SNP 52296 to 52896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,178 DEBUG Processing 233/741 atomic regions from SNP 69832 to 70433 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,197 DEBUG Processing 109/698 atomic regions from SNP 32508 to 33109 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,255 DEBUG Processing 176/727 atomic regions from SNP 52596 to 53196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,266 DEBUG Processing 573/847 atomic regions from SNP 171794 to 172394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,435 DEBUG Processing 234/741 atomic regions from SNP 70133 to 70734 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,479 DEBUG Processing 110/698 atomic regions from SNP 32809 to 33410 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,493 DEBUG Processing 177/727 atomic regions from SNP 52896 to 53496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,516 DEBUG Processing 574/847 atomic regions from SNP 172094 to 172694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,711 DEBUG Processing 235/741 atomic regions from SNP 70434 to 71035 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,754 DEBUG Processing 178/727 atomic regions from SNP 53196 to 53796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:30,772 DEBUG Processing 111/698 atomic regions from SNP 33110 to 33711 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:30,782 DEBUG Processing 575/847 atomic regions from SNP 172394 to 172994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:30,987 DEBUG Processing 236/741 atomic regions from SNP 70735 to 71336 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:30,996 DEBUG Processing 179/727 atomic regions from SNP 53496 to 54096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,033 DEBUG Processing 576/847 atomic regions from SNP 172694 to 173294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,054 DEBUG Processing 112/698 atomic regions from SNP 33411 to 34012 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,233 DEBUG Processing 237/741 atomic regions from SNP 71036 to 71637 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,244 DEBUG Processing 180/727 atomic regions from SNP 53796 to 54396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,286 DEBUG Processing 577/847 atomic regions from SNP 172994 to 173594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,338 DEBUG Processing 113/698 atomic regions from SNP 33712 to 34313 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,484 DEBUG Processing 238/741 atomic regions from SNP 71337 to 71938 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,499 DEBUG Processing 181/727 atomic regions from SNP 54096 to 54696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,537 DEBUG Processing 578/847 atomic regions from SNP 173294 to 173894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,607 DEBUG Processing 114/698 atomic regions from SNP 34013 to 34614 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,723 DEBUG Processing 239/741 atomic regions from SNP 71638 to 72239 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,738 DEBUG Processing 182/727 atomic regions from SNP 54396 to 54996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:31,788 DEBUG Processing 579/847 atomic regions from SNP 173594 to 174194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:31,886 DEBUG Processing 115/698 atomic regions from SNP 34314 to 34915 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:31,966 DEBUG Processing 240/741 atomic regions from SNP 71939 to 72540 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:31,983 DEBUG Processing 183/727 atomic regions from SNP 54696 to 55296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,043 DEBUG Processing 580/847 atomic regions from SNP 173894 to 174494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,169 DEBUG Processing 116/698 atomic regions from SNP 34615 to 35216 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,210 DEBUG Processing 241/741 atomic regions from SNP 72240 to 72841 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,244 DEBUG Processing 184/727 atomic regions from SNP 54996 to 55596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,300 DEBUG Processing 581/847 atomic regions from SNP 174194 to 174794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,448 DEBUG Processing 117/698 atomic regions from SNP 34916 to 35517 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,453 DEBUG Processing 242/741 atomic regions from SNP 72541 to 73142 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,516 DEBUG Processing 185/727 atomic regions from SNP 55296 to 55896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,557 DEBUG Processing 582/847 atomic regions from SNP 174494 to 175094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,702 DEBUG Processing 243/741 atomic regions from SNP 72842 to 73443 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,713 DEBUG Processing 118/698 atomic regions from SNP 35217 to 35818 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:32,760 DEBUG Processing 186/727 atomic regions from SNP 55596 to 56196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:32,818 DEBUG Processing 583/847 atomic regions from SNP 174794 to 175394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:32,942 DEBUG Processing 244/741 atomic regions from SNP 73143 to 73744 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:32,966 DEBUG Processing 119/698 atomic regions from SNP 35518 to 36119 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,009 DEBUG Processing 187/727 atomic regions from SNP 55896 to 56496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,084 DEBUG Processing 584/847 atomic regions from SNP 175094 to 175694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,188 DEBUG Processing 245/741 atomic regions from SNP 73444 to 74045 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,219 DEBUG Processing 120/698 atomic regions from SNP 35819 to 36420 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,263 DEBUG Processing 188/727 atomic regions from SNP 56196 to 56796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,356 DEBUG Processing 585/847 atomic regions from SNP 175394 to 175994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,439 DEBUG Processing 246/741 atomic regions from SNP 73745 to 74346 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,475 DEBUG Processing 121/698 atomic regions from SNP 36120 to 36721 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,512 DEBUG Processing 189/727 atomic regions from SNP 56496 to 57096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,615 DEBUG Processing 586/847 atomic regions from SNP 175694 to 176294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,681 DEBUG Processing 247/741 atomic regions from SNP 74046 to 74647 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,717 DEBUG Processing 122/698 atomic regions from SNP 36421 to 37022 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,747 DEBUG Processing 190/727 atomic regions from SNP 56796 to 57396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:33,868 DEBUG Processing 587/847 atomic regions from SNP 175994 to 176594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:33,921 DEBUG Processing 248/741 atomic regions from SNP 74347 to 74948 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:33,976 DEBUG Processing 123/698 atomic regions from SNP 36722 to 37323 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:33,989 DEBUG Processing 191/727 atomic regions from SNP 57096 to 57696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,128 DEBUG Processing 588/847 atomic regions from SNP 176294 to 176894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,166 DEBUG Processing 249/741 atomic regions from SNP 74648 to 75249 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,229 DEBUG Processing 192/727 atomic regions from SNP 57396 to 57996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,252 DEBUG Processing 124/698 atomic regions from SNP 37023 to 37624 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,384 DEBUG Processing 589/847 atomic regions from SNP 176594 to 177194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,410 DEBUG Processing 250/741 atomic regions from SNP 74949 to 75550 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,485 DEBUG Processing 193/727 atomic regions from SNP 57696 to 58296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,528 DEBUG Processing 125/698 atomic regions from SNP 37324 to 37925 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,640 DEBUG Processing 590/847 atomic regions from SNP 176894 to 177494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,656 DEBUG Processing 251/741 atomic regions from SNP 75250 to 75851 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,731 DEBUG Processing 194/727 atomic regions from SNP 57996 to 58596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:34,773 DEBUG Processing 126/698 atomic regions from SNP 37625 to 38226 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:34,892 DEBUG Processing 591/847 atomic regions from SNP 177194 to 177794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:34,898 DEBUG Processing 252/741 atomic regions from SNP 75551 to 76152 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:34,976 DEBUG Processing 195/727 atomic regions from SNP 58296 to 58896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,019 DEBUG Processing 127/698 atomic regions from SNP 37926 to 38527 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,140 DEBUG Processing 253/741 atomic regions from SNP 75852 to 76453 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,149 DEBUG Processing 592/847 atomic regions from SNP 177494 to 178094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,222 DEBUG Processing 196/727 atomic regions from SNP 58596 to 59196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,269 DEBUG Processing 128/698 atomic regions from SNP 38227 to 38828 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,384 DEBUG Processing 254/741 atomic regions from SNP 76153 to 76754 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,408 DEBUG Processing 593/847 atomic regions from SNP 177794 to 178394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,468 DEBUG Processing 197/727 atomic regions from SNP 58896 to 59496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,519 DEBUG Processing 129/698 atomic regions from SNP 38528 to 39129 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,625 DEBUG Processing 255/741 atomic regions from SNP 76454 to 77055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,661 DEBUG Processing 594/847 atomic regions from SNP 178094 to 178694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,711 DEBUG Processing 198/727 atomic regions from SNP 59196 to 59796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:35,768 DEBUG Processing 130/698 atomic regions from SNP 38829 to 39430 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:35,866 DEBUG Processing 256/741 atomic regions from SNP 76755 to 77355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:35,916 DEBUG Processing 595/847 atomic regions from SNP 178394 to 178994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:35,953 DEBUG Processing 199/727 atomic regions from SNP 59496 to 60096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,012 DEBUG Processing 131/698 atomic regions from SNP 39130 to 39731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,114 DEBUG Processing 257/741 atomic regions from SNP 77055 to 77655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,176 DEBUG Processing 596/847 atomic regions from SNP 178694 to 179294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,199 DEBUG Processing 200/727 atomic regions from SNP 59796 to 60396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,262 DEBUG Processing 132/698 atomic regions from SNP 39431 to 40032 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,367 DEBUG Processing 258/741 atomic regions from SNP 77355 to 77955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,441 DEBUG Processing 597/847 atomic regions from SNP 178994 to 179594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,444 DEBUG Processing 201/727 atomic regions from SNP 60096 to 60696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,514 DEBUG Processing 133/698 atomic regions from SNP 39732 to 40333 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,615 DEBUG Processing 259/741 atomic regions from SNP 77655 to 78255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,689 DEBUG Processing 202/727 atomic regions from SNP 60396 to 60996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,701 DEBUG Processing 598/847 atomic regions from SNP 179294 to 179894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:36,765 DEBUG Processing 134/698 atomic regions from SNP 40033 to 40634 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:36,864 DEBUG Processing 260/741 atomic regions from SNP 77955 to 78555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:36,935 DEBUG Processing 203/727 atomic regions from SNP 60696 to 61296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:36,960 DEBUG Processing 599/847 atomic regions from SNP 179594 to 180194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,031 DEBUG Processing 135/698 atomic regions from SNP 40334 to 40935 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,107 DEBUG Processing 261/741 atomic regions from SNP 78255 to 78855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,175 DEBUG Processing 204/727 atomic regions from SNP 60996 to 61596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,214 DEBUG Processing 600/847 atomic regions from SNP 179894 to 180494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,295 DEBUG Processing 136/698 atomic regions from SNP 40635 to 41236 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,354 DEBUG Processing 262/741 atomic regions from SNP 78555 to 79155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,422 DEBUG Processing 205/727 atomic regions from SNP 61296 to 61896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,472 DEBUG Processing 601/847 atomic regions from SNP 180194 to 180794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,553 DEBUG Processing 137/698 atomic regions from SNP 40936 to 41537 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,599 DEBUG Processing 263/741 atomic regions from SNP 78855 to 79455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,661 DEBUG Processing 206/727 atomic regions from SNP 61596 to 62196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,723 DEBUG Processing 602/847 atomic regions from SNP 180494 to 181094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:37,796 DEBUG Processing 138/698 atomic regions from SNP 41237 to 41838 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:37,840 DEBUG Processing 264/741 atomic regions from SNP 79155 to 79755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:37,904 DEBUG Processing 207/727 atomic regions from SNP 61896 to 62496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:37,978 DEBUG Processing 603/847 atomic regions from SNP 180794 to 181394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,061 DEBUG Processing 139/698 atomic regions from SNP 41538 to 42139 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,107 DEBUG Processing 265/741 atomic regions from SNP 79455 to 80055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,149 DEBUG Processing 208/727 atomic regions from SNP 62196 to 62796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,241 DEBUG Processing 604/847 atomic regions from SNP 181094 to 181694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,323 DEBUG Processing 140/698 atomic regions from SNP 41839 to 42440 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,358 DEBUG Processing 266/741 atomic regions from SNP 79755 to 80355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,400 DEBUG Processing 209/727 atomic regions from SNP 62496 to 63096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,498 DEBUG Processing 605/847 atomic regions from SNP 181394 to 181994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,581 DEBUG Processing 141/698 atomic regions from SNP 42140 to 42741 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,604 DEBUG Processing 267/741 atomic regions from SNP 80055 to 80655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,648 DEBUG Processing 210/727 atomic regions from SNP 62796 to 63396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:38,748 DEBUG Processing 606/847 atomic regions from SNP 181694 to 182294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:38,824 DEBUG Processing 142/698 atomic regions from SNP 42441 to 43042 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:38,845 DEBUG Processing 268/741 atomic regions from SNP 80355 to 80955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:38,889 DEBUG Processing 211/727 atomic regions from SNP 63096 to 63696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,003 DEBUG Processing 607/847 atomic regions from SNP 181994 to 182594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,070 DEBUG Processing 143/698 atomic regions from SNP 42742 to 43343 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,087 DEBUG Processing 269/741 atomic regions from SNP 80655 to 81255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,130 DEBUG Processing 212/727 atomic regions from SNP 63396 to 63996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,259 DEBUG Processing 608/847 atomic regions from SNP 182294 to 182894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,319 DEBUG Processing 144/698 atomic regions from SNP 43043 to 43644 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,331 DEBUG Processing 270/741 atomic regions from SNP 80955 to 81555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,370 DEBUG Processing 213/727 atomic regions from SNP 63696 to 64296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,509 DEBUG Processing 609/847 atomic regions from SNP 182594 to 183194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,567 DEBUG Processing 145/698 atomic regions from SNP 43344 to 43945 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,578 DEBUG Processing 271/741 atomic regions from SNP 81255 to 81855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,608 DEBUG Processing 214/727 atomic regions from SNP 63996 to 64596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:39,762 DEBUG Processing 610/847 atomic regions from SNP 182894 to 183494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:39,822 DEBUG Processing 146/698 atomic regions from SNP 43645 to 44246 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:39,828 DEBUG Processing 272/741 atomic regions from SNP 81555 to 82155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:39,854 DEBUG Processing 215/727 atomic regions from SNP 64296 to 64896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,014 DEBUG Processing 611/847 atomic regions from SNP 183194 to 183794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,074 DEBUG Processing 147/698 atomic regions from SNP 43946 to 44547 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,097 DEBUG Processing 273/741 atomic regions from SNP 81855 to 82455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,100 DEBUG Processing 216/727 atomic regions from SNP 64596 to 65196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,264 DEBUG Processing 612/847 atomic regions from SNP 183494 to 184094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,325 DEBUG Processing 148/698 atomic regions from SNP 44247 to 44848 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,348 DEBUG Processing 217/727 atomic regions from SNP 64896 to 65496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,349 DEBUG Processing 274/741 atomic regions from SNP 82155 to 82755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,524 DEBUG Processing 613/847 atomic regions from SNP 183794 to 184394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,585 DEBUG Processing 149/698 atomic regions from SNP 44548 to 45149 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,601 DEBUG Processing 218/727 atomic regions from SNP 65196 to 65796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,604 DEBUG Processing 275/741 atomic regions from SNP 82455 to 83055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:40,777 DEBUG Processing 614/847 atomic regions from SNP 184094 to 184694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:40,837 DEBUG Processing 150/698 atomic regions from SNP 44849 to 45450 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:40,847 DEBUG Processing 219/727 atomic regions from SNP 65496 to 66096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:40,853 DEBUG Processing 276/741 atomic regions from SNP 82755 to 83355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,026 DEBUG Processing 615/847 atomic regions from SNP 184394 to 184994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,086 DEBUG Processing 151/698 atomic regions from SNP 45150 to 45751 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,090 DEBUG Processing 220/727 atomic regions from SNP 65796 to 66396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,100 DEBUG Processing 277/741 atomic regions from SNP 83055 to 83655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,279 DEBUG Processing 616/847 atomic regions from SNP 184694 to 185294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,338 DEBUG Processing 221/727 atomic regions from SNP 66096 to 66696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,340 DEBUG Processing 152/698 atomic regions from SNP 45451 to 46052 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,348 DEBUG Processing 278/741 atomic regions from SNP 83355 to 83955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,531 DEBUG Processing 617/847 atomic regions from SNP 184994 to 185594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,587 DEBUG Processing 222/727 atomic regions from SNP 66396 to 66996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,594 DEBUG Processing 153/698 atomic regions from SNP 45752 to 46353 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:41,595 DEBUG Processing 279/741 atomic regions from SNP 83655 to 84255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,780 DEBUG Processing 618/847 atomic regions from SNP 185294 to 185894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:41,836 DEBUG Processing 223/727 atomic regions from SNP 66696 to 67296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:41,843 DEBUG Processing 280/741 atomic regions from SNP 83955 to 84555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:41,847 DEBUG Processing 154/698 atomic regions from SNP 46053 to 46654 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,029 DEBUG Processing 619/847 atomic regions from SNP 185594 to 186194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,081 DEBUG Processing 224/727 atomic regions from SNP 66996 to 67596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,089 DEBUG Processing 281/741 atomic regions from SNP 84255 to 84855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,100 DEBUG Processing 155/698 atomic regions from SNP 46354 to 46955 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,277 DEBUG Processing 620/847 atomic regions from SNP 185894 to 186494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,325 DEBUG Processing 225/727 atomic regions from SNP 67296 to 67896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,340 DEBUG Processing 282/741 atomic regions from SNP 84555 to 85155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,351 DEBUG Processing 156/698 atomic regions from SNP 46655 to 47256 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,529 DEBUG Processing 621/847 atomic regions from SNP 186194 to 186794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,575 DEBUG Processing 226/727 atomic regions from SNP 67596 to 68196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,591 DEBUG Processing 283/741 atomic regions from SNP 84855 to 85455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,611 DEBUG Processing 157/698 atomic regions from SNP 46956 to 47557 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:42,775 DEBUG Processing 622/847 atomic regions from SNP 186494 to 187094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:42,820 DEBUG Processing 227/727 atomic regions from SNP 67896 to 68496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:42,840 DEBUG Processing 284/741 atomic regions from SNP 85155 to 85755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:42,867 DEBUG Processing 158/698 atomic regions from SNP 47257 to 47858 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,021 DEBUG Processing 623/847 atomic regions from SNP 186794 to 187394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,065 DEBUG Processing 228/727 atomic regions from SNP 68196 to 68796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,090 DEBUG Processing 285/741 atomic regions from SNP 85455 to 86055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,124 DEBUG Processing 159/698 atomic regions from SNP 47558 to 48159 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,268 DEBUG Processing 624/847 atomic regions from SNP 187094 to 187694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,304 DEBUG Processing 229/727 atomic regions from SNP 68496 to 69096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,337 DEBUG Processing 286/741 atomic regions from SNP 85755 to 86355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,375 DEBUG Processing 160/698 atomic regions from SNP 47859 to 48460 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,513 DEBUG Processing 625/847 atomic regions from SNP 187394 to 187994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,541 DEBUG Processing 230/727 atomic regions from SNP 68796 to 69396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,583 DEBUG Processing 287/741 atomic regions from SNP 86055 to 86655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,628 DEBUG Processing 161/698 atomic regions from SNP 48160 to 48761 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:43,769 DEBUG Processing 626/847 atomic regions from SNP 187694 to 188294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:43,784 DEBUG Processing 231/727 atomic regions from SNP 69096 to 69696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:43,844 DEBUG Processing 288/741 atomic regions from SNP 86355 to 86955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:43,879 DEBUG Processing 162/698 atomic regions from SNP 48461 to 49062 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,016 DEBUG Processing 627/847 atomic regions from SNP 187994 to 188594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,020 DEBUG Processing 232/727 atomic regions from SNP 69396 to 69996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,095 DEBUG Processing 289/741 atomic regions from SNP 86655 to 87255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,134 DEBUG Processing 163/698 atomic regions from SNP 48762 to 49363 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,261 DEBUG Processing 233/727 atomic regions from SNP 69696 to 70296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,270 DEBUG Processing 628/847 atomic regions from SNP 188294 to 188894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,345 DEBUG Processing 290/741 atomic regions from SNP 86955 to 87555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,392 DEBUG Processing 164/698 atomic regions from SNP 49063 to 49664 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,503 DEBUG Processing 234/727 atomic regions from SNP 69996 to 70596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,524 DEBUG Processing 629/847 atomic regions from SNP 188594 to 189194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,604 DEBUG Processing 291/741 atomic regions from SNP 87255 to 87855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,642 DEBUG Processing 165/698 atomic regions from SNP 49364 to 49965 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,737 DEBUG Processing 235/727 atomic regions from SNP 70296 to 70896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:44,774 DEBUG Processing 630/847 atomic regions from SNP 188894 to 189494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:44,857 DEBUG Processing 292/741 atomic regions from SNP 87555 to 88155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:44,890 DEBUG Processing 166/698 atomic regions from SNP 49665 to 50266 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:44,971 DEBUG Processing 236/727 atomic regions from SNP 70596 to 71196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,024 DEBUG Processing 631/847 atomic regions from SNP 189194 to 189794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,105 DEBUG Processing 293/741 atomic regions from SNP 87855 to 88455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,144 DEBUG Processing 167/698 atomic regions from SNP 49966 to 50567 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,206 DEBUG Processing 237/727 atomic regions from SNP 70896 to 71496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,271 DEBUG Processing 632/847 atomic regions from SNP 189494 to 190094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,350 DEBUG Processing 294/741 atomic regions from SNP 88155 to 88755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,393 DEBUG Processing 168/698 atomic regions from SNP 50267 to 50868 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,441 DEBUG Processing 238/727 atomic regions from SNP 71196 to 71796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,520 DEBUG Processing 633/847 atomic regions from SNP 189794 to 190394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,600 DEBUG Processing 295/741 atomic regions from SNP 88455 to 89055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,647 DEBUG Processing 169/698 atomic regions from SNP 50568 to 51169 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,688 DEBUG Processing 239/727 atomic regions from SNP 71496 to 72096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:45,787 DEBUG Processing 634/847 atomic regions from SNP 190094 to 190694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:45,850 DEBUG Processing 296/741 atomic regions from SNP 88755 to 89355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:45,903 DEBUG Processing 170/698 atomic regions from SNP 50869 to 51470 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:45,938 DEBUG Processing 240/727 atomic regions from SNP 71796 to 72396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,070 DEBUG Processing 635/847 atomic regions from SNP 190394 to 190994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,101 DEBUG Processing 297/741 atomic regions from SNP 89055 to 89655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,157 DEBUG Processing 171/698 atomic regions from SNP 51170 to 51771 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,192 DEBUG Processing 241/727 atomic regions from SNP 72096 to 72696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,346 DEBUG Processing 298/741 atomic regions from SNP 89355 to 89955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,354 DEBUG Processing 636/847 atomic regions from SNP 190694 to 191294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,407 DEBUG Processing 172/698 atomic regions from SNP 51471 to 52072 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,435 DEBUG Processing 242/727 atomic regions from SNP 72396 to 72996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,595 DEBUG Processing 299/741 atomic regions from SNP 89655 to 90255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,651 DEBUG Processing 637/847 atomic regions from SNP 190994 to 191594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:46,664 DEBUG Processing 173/698 atomic regions from SNP 51772 to 52373 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,691 DEBUG Processing 243/727 atomic regions from SNP 72696 to 73296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,845 DEBUG Processing 300/741 atomic regions from SNP 89955 to 90555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:46,947 DEBUG Processing 174/698 atomic regions from SNP 52073 to 52674 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:46,948 DEBUG Processing 244/727 atomic regions from SNP 72996 to 73596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:46,949 DEBUG Processing 638/847 atomic regions from SNP 191294 to 191894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,090 DEBUG Processing 301/741 atomic regions from SNP 90255 to 90855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,197 DEBUG Processing 245/727 atomic regions from SNP 73296 to 73896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,203 DEBUG Processing 175/698 atomic regions from SNP 52374 to 52975 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,250 DEBUG Processing 639/847 atomic regions from SNP 191594 to 192194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,328 DEBUG Processing 302/741 atomic regions from SNP 90555 to 91155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,437 DEBUG Processing 246/727 atomic regions from SNP 73596 to 74196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,461 DEBUG Processing 176/698 atomic regions from SNP 52675 to 53276 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,537 DEBUG Processing 640/847 atomic regions from SNP 191894 to 192494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,565 DEBUG Processing 303/741 atomic regions from SNP 90855 to 91455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,683 DEBUG Processing 247/727 atomic regions from SNP 73896 to 74496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,715 DEBUG Processing 177/698 atomic regions from SNP 52976 to 53577 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:47,804 DEBUG Processing 641/847 atomic regions from SNP 192194 to 192794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:47,811 DEBUG Processing 304/741 atomic regions from SNP 91155 to 91755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:47,924 DEBUG Processing 248/727 atomic regions from SNP 74196 to 74796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:47,967 DEBUG Processing 178/698 atomic regions from SNP 53277 to 53878 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,051 DEBUG Processing 305/741 atomic regions from SNP 91455 to 92055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,055 DEBUG Processing 642/847 atomic regions from SNP 192494 to 193094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,182 DEBUG Processing 249/727 atomic regions from SNP 74496 to 75096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,223 DEBUG Processing 179/698 atomic regions from SNP 53578 to 54179 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,298 DEBUG Processing 306/741 atomic regions from SNP 91755 to 92355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,313 DEBUG Processing 643/847 atomic regions from SNP 192794 to 193394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,448 DEBUG Processing 250/727 atomic regions from SNP 74796 to 75396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,478 DEBUG Processing 180/698 atomic regions from SNP 53879 to 54480 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,543 DEBUG Processing 307/741 atomic regions from SNP 92055 to 92655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,568 DEBUG Processing 644/847 atomic regions from SNP 193094 to 193694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,697 DEBUG Processing 251/727 atomic regions from SNP 75096 to 75696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,736 DEBUG Processing 181/698 atomic regions from SNP 54180 to 54781 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:48,790 DEBUG Processing 308/741 atomic regions from SNP 92355 to 92955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:48,825 DEBUG Processing 645/847 atomic regions from SNP 193394 to 193994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:48,945 DEBUG Processing 252/727 atomic regions from SNP 75396 to 75996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:48,992 DEBUG Processing 182/698 atomic regions from SNP 54481 to 55082 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,034 DEBUG Processing 309/741 atomic regions from SNP 92655 to 93255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,092 DEBUG Processing 646/847 atomic regions from SNP 193694 to 194294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,192 DEBUG Processing 253/727 atomic regions from SNP 75696 to 76296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,257 DEBUG Processing 183/698 atomic regions from SNP 54782 to 55383 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,294 DEBUG Processing 310/741 atomic regions from SNP 92955 to 93555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,373 DEBUG Processing 647/847 atomic regions from SNP 193994 to 194594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,450 DEBUG Processing 254/727 atomic regions from SNP 75996 to 76596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,518 DEBUG Processing 184/698 atomic regions from SNP 55083 to 55684 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,543 DEBUG Processing 311/741 atomic regions from SNP 93255 to 93855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,624 DEBUG Processing 648/847 atomic regions from SNP 194294 to 194894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,696 DEBUG Processing 255/727 atomic regions from SNP 76296 to 76896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:49,775 DEBUG Processing 185/698 atomic regions from SNP 55384 to 55985 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:49,793 DEBUG Processing 312/741 atomic regions from SNP 93555 to 94155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:49,880 DEBUG Processing 649/847 atomic regions from SNP 194594 to 195194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:49,938 DEBUG Processing 256/727 atomic regions from SNP 76596 to 77196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,030 DEBUG Processing 186/698 atomic regions from SNP 55685 to 56286 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,043 DEBUG Processing 313/741 atomic regions from SNP 93855 to 94455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,152 DEBUG Processing 650/847 atomic regions from SNP 194894 to 195494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,177 DEBUG Processing 257/727 atomic regions from SNP 76896 to 77496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,283 DEBUG Processing 187/698 atomic regions from SNP 55986 to 56587 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,295 DEBUG Processing 314/741 atomic regions from SNP 94155 to 94755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,419 DEBUG Processing 258/727 atomic regions from SNP 77196 to 77796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,440 DEBUG Processing 651/847 atomic regions from SNP 195194 to 195794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,541 DEBUG Processing 188/698 atomic regions from SNP 56287 to 56888 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,548 DEBUG Processing 315/741 atomic regions from SNP 94455 to 95055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,670 DEBUG Processing 259/727 atomic regions from SNP 77496 to 78096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:50,742 DEBUG Processing 652/847 atomic regions from SNP 195494 to 196094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:50,796 DEBUG Processing 189/698 atomic regions from SNP 56588 to 57189 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:50,816 DEBUG Processing 316/741 atomic regions from SNP 94755 to 95355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:50,912 DEBUG Processing 260/727 atomic regions from SNP 77796 to 78396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,034 DEBUG Processing 653/847 atomic regions from SNP 195794 to 196394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,057 DEBUG Processing 190/698 atomic regions from SNP 56889 to 57490 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,058 DEBUG Processing 317/741 atomic regions from SNP 95055 to 95655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,153 DEBUG Processing 261/727 atomic regions from SNP 78096 to 78696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,297 DEBUG Processing 654/847 atomic regions from SNP 196094 to 196694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,300 DEBUG Processing 318/741 atomic regions from SNP 95355 to 95955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,305 DEBUG Processing 191/698 atomic regions from SNP 57190 to 57791 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,396 DEBUG Processing 262/727 atomic regions from SNP 78396 to 78996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,542 DEBUG Processing 319/741 atomic regions from SNP 95655 to 96255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,553 DEBUG Processing 192/698 atomic regions from SNP 57491 to 58092 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,556 DEBUG Processing 655/847 atomic regions from SNP 196394 to 196994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,643 DEBUG Processing 263/727 atomic regions from SNP 78696 to 79296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:51,786 DEBUG Processing 320/741 atomic regions from SNP 95955 to 96555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:51,803 DEBUG Processing 193/698 atomic regions from SNP 57792 to 58393 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:51,809 DEBUG Processing 656/847 atomic regions from SNP 196694 to 197294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:51,895 DEBUG Processing 264/727 atomic regions from SNP 78996 to 79596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,043 DEBUG Processing 321/741 atomic regions from SNP 96255 to 96855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,056 DEBUG Processing 194/698 atomic regions from SNP 58093 to 58694 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,068 DEBUG Processing 657/847 atomic regions from SNP 196994 to 197594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,142 DEBUG Processing 265/727 atomic regions from SNP 79296 to 79896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,307 DEBUG Processing 195/698 atomic regions from SNP 58394 to 58995 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,315 DEBUG Processing 322/741 atomic regions from SNP 96555 to 97155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,325 DEBUG Processing 658/847 atomic regions from SNP 197294 to 197894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,386 DEBUG Processing 266/727 atomic regions from SNP 79596 to 80196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,554 DEBUG Processing 196/698 atomic regions from SNP 58695 to 59296 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,558 DEBUG Processing 323/741 atomic regions from SNP 96855 to 97455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,581 DEBUG Processing 659/847 atomic regions from SNP 197594 to 198194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,630 DEBUG Processing 267/727 atomic regions from SNP 79896 to 80496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:52,804 DEBUG Processing 197/698 atomic regions from SNP 58996 to 59597 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:52,804 DEBUG Processing 324/741 atomic regions from SNP 97155 to 97755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:52,840 DEBUG Processing 660/847 atomic regions from SNP 197894 to 198494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:52,879 DEBUG Processing 268/727 atomic regions from SNP 80196 to 80796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,056 DEBUG Processing 198/698 atomic regions from SNP 59297 to 59898 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,077 DEBUG Processing 325/741 atomic regions from SNP 97455 to 98055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,097 DEBUG Processing 661/847 atomic regions from SNP 198194 to 198794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,123 DEBUG Processing 269/727 atomic regions from SNP 80496 to 81096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,307 DEBUG Processing 199/698 atomic regions from SNP 59598 to 60199 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,351 DEBUG Processing 662/847 atomic regions from SNP 198494 to 199094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,357 DEBUG Processing 326/741 atomic regions from SNP 97755 to 98355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,369 DEBUG Processing 270/727 atomic regions from SNP 80796 to 81396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,559 DEBUG Processing 200/698 atomic regions from SNP 59899 to 60500 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,608 DEBUG Processing 663/847 atomic regions from SNP 198794 to 199394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:53,614 DEBUG Processing 271/727 atomic regions from SNP 81096 to 81696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,626 DEBUG Processing 327/741 atomic regions from SNP 98055 to 98655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,810 DEBUG Processing 201/698 atomic regions from SNP 60200 to 60801 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:53,859 DEBUG Processing 272/727 atomic regions from SNP 81396 to 81996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:53,886 DEBUG Processing 328/741 atomic regions from SNP 98355 to 98955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:53,895 DEBUG Processing 664/847 atomic regions from SNP 199094 to 199694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,062 DEBUG Processing 202/698 atomic regions from SNP 60501 to 61102 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,105 DEBUG Processing 273/727 atomic regions from SNP 81696 to 82296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,142 DEBUG Processing 329/741 atomic regions from SNP 98655 to 99255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,185 DEBUG Processing 665/847 atomic regions from SNP 199394 to 199994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,310 DEBUG Processing 203/698 atomic regions from SNP 60802 to 61403 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,352 DEBUG Processing 274/727 atomic regions from SNP 81996 to 82596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,395 DEBUG Processing 330/741 atomic regions from SNP 98955 to 99555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,442 DEBUG Processing 666/847 atomic regions from SNP 199694 to 200294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,561 DEBUG Processing 204/698 atomic regions from SNP 61103 to 61704 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,598 DEBUG Processing 275/727 atomic regions from SNP 82296 to 82896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,647 DEBUG Processing 331/741 atomic regions from SNP 99255 to 99855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,703 DEBUG Processing 667/847 atomic regions from SNP 199994 to 200594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:54,813 DEBUG Processing 205/698 atomic regions from SNP 61404 to 62005 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:54,846 DEBUG Processing 276/727 atomic regions from SNP 82596 to 83196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:54,896 DEBUG Processing 332/741 atomic regions from SNP 99555 to 100155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:54,962 DEBUG Processing 668/847 atomic regions from SNP 200294 to 200894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,062 DEBUG Processing 206/698 atomic regions from SNP 61705 to 62306 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,090 DEBUG Processing 277/727 atomic regions from SNP 82896 to 83496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,148 DEBUG Processing 333/741 atomic regions from SNP 99855 to 100455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,221 DEBUG Processing 669/847 atomic regions from SNP 200594 to 201194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,311 DEBUG Processing 207/698 atomic regions from SNP 62006 to 62607 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,336 DEBUG Processing 278/727 atomic regions from SNP 83196 to 83796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,400 DEBUG Processing 334/741 atomic regions from SNP 100155 to 100755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,479 DEBUG Processing 670/847 atomic regions from SNP 200894 to 201494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,562 DEBUG Processing 208/698 atomic regions from SNP 62307 to 62908 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,580 DEBUG Processing 279/727 atomic regions from SNP 83496 to 84096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,674 DEBUG Processing 335/741 atomic regions from SNP 100455 to 101055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:55,737 DEBUG Processing 671/847 atomic regions from SNP 201194 to 201794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:55,810 DEBUG Processing 209/698 atomic regions from SNP 62608 to 63209 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:55,826 DEBUG Processing 280/727 atomic regions from SNP 83796 to 84396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:55,956 DEBUG Processing 336/741 atomic regions from SNP 100755 to 101355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,015 DEBUG Processing 672/847 atomic regions from SNP 201494 to 202094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,068 DEBUG Processing 210/698 atomic regions from SNP 62909 to 63510 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,077 DEBUG Processing 281/727 atomic regions from SNP 84096 to 84696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,240 DEBUG Processing 337/741 atomic regions from SNP 101055 to 101655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,301 DEBUG Processing 673/847 atomic regions from SNP 201794 to 202394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,322 DEBUG Processing 211/698 atomic regions from SNP 63210 to 63811 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,324 DEBUG Processing 282/727 atomic regions from SNP 84396 to 84996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,502 DEBUG Processing 338/741 atomic regions from SNP 101355 to 101955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,574 DEBUG Processing 283/727 atomic regions from SNP 84696 to 85296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,575 DEBUG Processing 212/698 atomic regions from SNP 63511 to 64112 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,593 DEBUG Processing 674/847 atomic regions from SNP 202094 to 202694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:56,759 DEBUG Processing 339/741 atomic regions from SNP 101655 to 102255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:56,821 DEBUG Processing 284/727 atomic regions from SNP 84996 to 85596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:56,849 DEBUG Processing 213/698 atomic regions from SNP 63812 to 64413 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:56,874 DEBUG Processing 675/847 atomic regions from SNP 202394 to 202994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,028 DEBUG Processing 340/741 atomic regions from SNP 101955 to 102555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,070 DEBUG Processing 285/727 atomic regions from SNP 85296 to 85896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,130 DEBUG Processing 676/847 atomic regions from SNP 202694 to 203294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,135 DEBUG Processing 214/698 atomic regions from SNP 64113 to 64714 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,314 DEBUG Processing 341/741 atomic regions from SNP 102255 to 102855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,319 DEBUG Processing 286/727 atomic regions from SNP 85596 to 86196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,404 DEBUG Processing 677/847 atomic regions from SNP 202994 to 203594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,416 DEBUG Processing 215/698 atomic regions from SNP 64414 to 65015 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,570 DEBUG Processing 287/727 atomic regions from SNP 85896 to 86496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,595 DEBUG Processing 342/741 atomic regions from SNP 102555 to 103155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,671 DEBUG Processing 216/698 atomic regions from SNP 64715 to 65316 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,696 DEBUG Processing 678/847 atomic regions from SNP 203294 to 203894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:57,816 DEBUG Processing 288/727 atomic regions from SNP 86196 to 86796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:57,871 DEBUG Processing 343/741 atomic regions from SNP 102855 to 103455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:57,927 DEBUG Processing 217/698 atomic regions from SNP 65016 to 65617 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:57,986 DEBUG Processing 679/847 atomic regions from SNP 203594 to 204194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,058 DEBUG Processing 289/727 atomic regions from SNP 86496 to 87096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,134 DEBUG Processing 344/741 atomic regions from SNP 103155 to 103755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,182 DEBUG Processing 218/698 atomic regions from SNP 65317 to 65918 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,275 DEBUG Processing 680/847 atomic regions from SNP 203894 to 204494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,303 DEBUG Processing 290/727 atomic regions from SNP 86796 to 87396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,412 DEBUG Processing 345/741 atomic regions from SNP 103455 to 104055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,443 DEBUG Processing 219/698 atomic regions from SNP 65618 to 66219 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,559 DEBUG Processing 291/727 atomic regions from SNP 87096 to 87696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,571 DEBUG Processing 681/847 atomic regions from SNP 204194 to 204794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,684 DEBUG Processing 346/741 atomic regions from SNP 103755 to 104355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,707 DEBUG Processing 220/698 atomic regions from SNP 65919 to 66520 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:58,807 DEBUG Processing 292/727 atomic regions from SNP 87396 to 87996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:58,855 DEBUG Processing 682/847 atomic regions from SNP 204494 to 205094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:58,956 DEBUG Processing 347/741 atomic regions from SNP 104055 to 104655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:58,961 DEBUG Processing 221/698 atomic regions from SNP 66220 to 66821 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,054 DEBUG Processing 293/727 atomic regions from SNP 87696 to 88296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,152 DEBUG Processing 683/847 atomic regions from SNP 204794 to 205394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,228 DEBUG Processing 222/698 atomic regions from SNP 66521 to 67122 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,236 DEBUG Processing 348/741 atomic regions from SNP 104355 to 104955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,303 DEBUG Processing 294/727 atomic regions from SNP 87996 to 88596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,447 DEBUG Processing 684/847 atomic regions from SNP 205094 to 205694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,484 DEBUG Processing 223/698 atomic regions from SNP 66822 to 67423 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,488 DEBUG Processing 349/741 atomic regions from SNP 104655 to 105255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,550 DEBUG Processing 295/727 atomic regions from SNP 88296 to 88896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,736 DEBUG Processing 685/847 atomic regions from SNP 205394 to 205994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:50:59,739 DEBUG Processing 224/698 atomic regions from SNP 67123 to 67724 for chr7 (subchromosome 3 of 3). 2025-01-31 09:50:59,740 DEBUG Processing 350/741 atomic regions from SNP 104955 to 105555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,798 DEBUG Processing 296/727 atomic regions from SNP 88596 to 89196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:50:59,995 DEBUG Processing 351/741 atomic regions from SNP 105255 to 105855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:50:59,997 DEBUG Processing 225/698 atomic regions from SNP 67424 to 68025 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,013 DEBUG Processing 686/847 atomic regions from SNP 205694 to 206294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,051 DEBUG Processing 297/727 atomic regions from SNP 88896 to 89496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,249 DEBUG Processing 352/741 atomic regions from SNP 105555 to 106155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,279 DEBUG Processing 226/698 atomic regions from SNP 67725 to 68326 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,280 DEBUG Processing 687/847 atomic regions from SNP 205994 to 206594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,303 DEBUG Processing 298/727 atomic regions from SNP 89196 to 89796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,507 DEBUG Processing 353/741 atomic regions from SNP 105855 to 106455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,546 DEBUG Processing 688/847 atomic regions from SNP 206294 to 206894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,556 DEBUG Processing 227/698 atomic regions from SNP 68026 to 68627 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:00,556 DEBUG Processing 299/727 atomic regions from SNP 89496 to 90096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,764 DEBUG Processing 354/741 atomic regions from SNP 106155 to 106755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:00,812 DEBUG Processing 300/727 atomic regions from SNP 89796 to 90396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:00,816 DEBUG Processing 689/847 atomic regions from SNP 206594 to 207194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:00,818 DEBUG Processing 228/698 atomic regions from SNP 68327 to 68928 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,017 DEBUG Processing 355/741 atomic regions from SNP 106455 to 107055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,078 DEBUG Processing 301/727 atomic regions from SNP 90096 to 90696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,083 DEBUG Processing 690/847 atomic regions from SNP 206894 to 207494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,086 DEBUG Processing 229/698 atomic regions from SNP 68628 to 69229 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,268 DEBUG Processing 356/741 atomic regions from SNP 106755 to 107355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,332 DEBUG Processing 302/727 atomic regions from SNP 90396 to 90996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,346 DEBUG Processing 230/698 atomic regions from SNP 68929 to 69530 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,371 DEBUG Processing 691/847 atomic regions from SNP 207194 to 207794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,527 DEBUG Processing 357/741 atomic regions from SNP 107055 to 107655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,607 DEBUG Processing 231/698 atomic regions from SNP 69230 to 69831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,620 DEBUG Processing 303/727 atomic regions from SNP 90696 to 91296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,656 DEBUG Processing 692/847 atomic regions from SNP 207494 to 208094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:01,776 DEBUG Processing 358/741 atomic regions from SNP 107355 to 107955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:01,860 DEBUG Processing 232/698 atomic regions from SNP 69531 to 70131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:01,891 DEBUG Processing 304/727 atomic regions from SNP 90996 to 91596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:01,941 DEBUG Processing 693/847 atomic regions from SNP 207794 to 208394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,026 DEBUG Processing 359/741 atomic regions from SNP 107655 to 108255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,117 DEBUG Processing 233/698 atomic regions from SNP 69831 to 70431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,141 DEBUG Processing 305/727 atomic regions from SNP 91296 to 91896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,235 DEBUG Processing 694/847 atomic regions from SNP 208094 to 208694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,278 DEBUG Processing 360/741 atomic regions from SNP 107955 to 108555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,378 DEBUG Processing 234/698 atomic regions from SNP 70131 to 70731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,396 DEBUG Processing 306/727 atomic regions from SNP 91596 to 92196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,539 DEBUG Processing 695/847 atomic regions from SNP 208394 to 208994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,545 DEBUG Processing 361/741 atomic regions from SNP 108255 to 108855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,638 DEBUG Processing 235/698 atomic regions from SNP 70431 to 71031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:02,651 DEBUG Processing 307/727 atomic regions from SNP 91896 to 92496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,797 DEBUG Processing 362/741 atomic regions from SNP 108555 to 109155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:02,806 DEBUG Processing 696/847 atomic regions from SNP 208694 to 209294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:02,903 DEBUG Processing 308/727 atomic regions from SNP 92196 to 92796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:02,911 DEBUG Processing 236/698 atomic regions from SNP 70731 to 71331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,047 DEBUG Processing 363/741 atomic regions from SNP 108855 to 109455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,072 DEBUG Processing 697/847 atomic regions from SNP 208994 to 209594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,155 DEBUG Processing 309/727 atomic regions from SNP 92496 to 93096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,168 DEBUG Processing 237/698 atomic regions from SNP 71031 to 71631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,297 DEBUG Processing 364/741 atomic regions from SNP 109155 to 109755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,339 DEBUG Processing 698/847 atomic regions from SNP 209294 to 209894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,410 DEBUG Processing 310/727 atomic regions from SNP 92796 to 93396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,451 DEBUG Processing 238/698 atomic regions from SNP 71331 to 71931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,542 DEBUG Processing 365/741 atomic regions from SNP 109455 to 110055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,605 DEBUG Processing 699/847 atomic regions from SNP 209594 to 210194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,666 DEBUG Processing 311/727 atomic regions from SNP 93096 to 93696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,718 DEBUG Processing 239/698 atomic regions from SNP 71631 to 72231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:03,791 DEBUG Processing 366/741 atomic regions from SNP 109755 to 110355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:03,866 DEBUG Processing 700/847 atomic regions from SNP 209894 to 210494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:03,923 DEBUG Processing 312/727 atomic regions from SNP 93396 to 93996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:03,974 DEBUG Processing 240/698 atomic regions from SNP 71931 to 72531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,036 DEBUG Processing 367/741 atomic regions from SNP 110055 to 110655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,132 DEBUG Processing 701/847 atomic regions from SNP 210194 to 210794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,177 DEBUG Processing 313/727 atomic regions from SNP 93696 to 94296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,229 DEBUG Processing 241/698 atomic regions from SNP 72231 to 72831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,287 DEBUG Processing 368/741 atomic regions from SNP 110355 to 110955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,411 DEBUG Processing 702/847 atomic regions from SNP 210494 to 211094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,426 DEBUG Processing 314/727 atomic regions from SNP 93996 to 94596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,488 DEBUG Processing 242/698 atomic regions from SNP 72531 to 73131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,538 DEBUG Processing 369/741 atomic regions from SNP 110655 to 111255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,680 DEBUG Processing 315/727 atomic regions from SNP 94296 to 94896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:04,707 DEBUG Processing 703/847 atomic regions from SNP 210794 to 211394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:04,751 DEBUG Processing 243/698 atomic regions from SNP 72831 to 73431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:04,792 DEBUG Processing 370/741 atomic regions from SNP 110955 to 111555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:04,928 DEBUG Processing 316/727 atomic regions from SNP 94596 to 95196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,011 DEBUG Processing 244/698 atomic regions from SNP 73131 to 73731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,011 DEBUG Processing 704/847 atomic regions from SNP 211094 to 211694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,047 DEBUG Processing 371/741 atomic regions from SNP 111255 to 111855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,167 DEBUG Processing 317/727 atomic regions from SNP 94896 to 95496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,272 DEBUG Processing 245/698 atomic regions from SNP 73431 to 74031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,307 DEBUG Processing 372/741 atomic regions from SNP 111555 to 112155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,319 DEBUG Processing 705/847 atomic regions from SNP 211394 to 211994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,406 DEBUG Processing 318/727 atomic regions from SNP 95196 to 95796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,534 DEBUG Processing 246/698 atomic regions from SNP 73731 to 74331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,567 DEBUG Processing 373/741 atomic regions from SNP 111855 to 112455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,626 DEBUG Processing 706/847 atomic regions from SNP 211694 to 212294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:05,650 DEBUG Processing 319/727 atomic regions from SNP 95496 to 96096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,789 DEBUG Processing 247/698 atomic regions from SNP 74031 to 74631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:05,830 DEBUG Processing 374/741 atomic regions from SNP 112155 to 112755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:05,905 DEBUG Processing 320/727 atomic regions from SNP 95796 to 96396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:05,920 DEBUG Processing 707/847 atomic regions from SNP 211994 to 212594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,037 DEBUG Processing 248/698 atomic regions from SNP 74331 to 74931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,084 DEBUG Processing 375/741 atomic regions from SNP 112455 to 113055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,162 DEBUG Processing 321/727 atomic regions from SNP 96096 to 96696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,227 DEBUG Processing 708/847 atomic regions from SNP 212294 to 212894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,286 DEBUG Processing 249/698 atomic regions from SNP 74631 to 75231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,338 DEBUG Processing 376/741 atomic regions from SNP 112755 to 113355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,446 DEBUG Processing 322/727 atomic regions from SNP 96396 to 96996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,512 DEBUG Processing 709/847 atomic regions from SNP 212594 to 213194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,534 DEBUG Processing 250/698 atomic regions from SNP 74931 to 75531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,588 DEBUG Processing 377/741 atomic regions from SNP 113055 to 113655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,716 DEBUG Processing 323/727 atomic regions from SNP 96696 to 97296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:06,773 DEBUG Processing 710/847 atomic regions from SNP 212894 to 213494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:06,786 DEBUG Processing 251/698 atomic regions from SNP 75231 to 75831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:06,840 DEBUG Processing 378/741 atomic regions from SNP 113355 to 113955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:06,972 DEBUG Processing 324/727 atomic regions from SNP 96996 to 97596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,040 DEBUG Processing 711/847 atomic regions from SNP 213194 to 213794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,041 DEBUG Processing 252/698 atomic regions from SNP 75531 to 76131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,090 DEBUG Processing 379/741 atomic regions from SNP 113655 to 114255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,226 DEBUG Processing 325/727 atomic regions from SNP 97296 to 97896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,298 DEBUG Processing 253/698 atomic regions from SNP 75831 to 76431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,311 DEBUG Processing 712/847 atomic regions from SNP 213494 to 214094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,343 DEBUG Processing 380/741 atomic regions from SNP 113955 to 114555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,474 DEBUG Processing 326/727 atomic regions from SNP 97596 to 98196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,552 DEBUG Processing 254/698 atomic regions from SNP 76131 to 76731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,575 DEBUG Processing 713/847 atomic regions from SNP 213794 to 214394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,614 DEBUG Processing 381/741 atomic regions from SNP 114255 to 114855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,727 DEBUG Processing 327/727 atomic regions from SNP 97896 to 98496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:07,810 DEBUG Processing 255/698 atomic regions from SNP 76431 to 77031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:07,845 DEBUG Processing 714/847 atomic regions from SNP 214094 to 214694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:07,869 DEBUG Processing 382/741 atomic regions from SNP 114555 to 115155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:07,981 DEBUG Processing 328/727 atomic regions from SNP 98196 to 98796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,058 DEBUG Processing 256/698 atomic regions from SNP 76731 to 77331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,105 DEBUG Processing 715/847 atomic regions from SNP 214394 to 214994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,125 DEBUG Processing 383/741 atomic regions from SNP 114855 to 115455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,235 DEBUG Processing 329/727 atomic regions from SNP 98496 to 99096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,314 DEBUG Processing 257/698 atomic regions from SNP 77031 to 77631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,373 DEBUG Processing 716/847 atomic regions from SNP 214694 to 215294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,384 DEBUG Processing 384/741 atomic regions from SNP 115155 to 115755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,488 DEBUG Processing 330/727 atomic regions from SNP 98796 to 99396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,568 DEBUG Processing 258/698 atomic regions from SNP 77331 to 77931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,635 DEBUG Processing 717/847 atomic regions from SNP 214994 to 215594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,641 DEBUG Processing 385/741 atomic regions from SNP 115455 to 116055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,740 DEBUG Processing 331/727 atomic regions from SNP 99096 to 99696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:08,817 DEBUG Processing 259/698 atomic regions from SNP 77631 to 78231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:08,896 DEBUG Processing 718/847 atomic regions from SNP 215294 to 215894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:08,913 DEBUG Processing 386/741 atomic regions from SNP 115755 to 116355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:08,997 DEBUG Processing 332/727 atomic regions from SNP 99396 to 99996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,072 DEBUG Processing 260/698 atomic regions from SNP 77931 to 78531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,159 DEBUG Processing 719/847 atomic regions from SNP 215594 to 216194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,173 DEBUG Processing 387/741 atomic regions from SNP 116055 to 116655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,255 DEBUG Processing 333/727 atomic regions from SNP 99696 to 100296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,332 DEBUG Processing 261/698 atomic regions from SNP 78231 to 78831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,426 DEBUG Processing 388/741 atomic regions from SNP 116355 to 116955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,434 DEBUG Processing 720/847 atomic regions from SNP 215894 to 216494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,508 DEBUG Processing 334/727 atomic regions from SNP 99996 to 100596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,599 DEBUG Processing 262/698 atomic regions from SNP 78531 to 79131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,679 DEBUG Processing 389/741 atomic regions from SNP 116655 to 117255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:09,727 DEBUG Processing 721/847 atomic regions from SNP 216194 to 216794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:09,765 DEBUG Processing 335/727 atomic regions from SNP 100296 to 100896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:09,865 DEBUG Processing 263/698 atomic regions from SNP 78831 to 79431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:09,935 DEBUG Processing 390/741 atomic regions from SNP 116955 to 117555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,006 DEBUG Processing 722/847 atomic regions from SNP 216494 to 217094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,033 DEBUG Processing 336/727 atomic regions from SNP 100596 to 101196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,126 DEBUG Processing 264/698 atomic regions from SNP 79131 to 79731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,192 DEBUG Processing 391/741 atomic regions from SNP 117255 to 117855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,271 DEBUG Processing 723/847 atomic regions from SNP 216794 to 217394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,287 DEBUG Processing 337/727 atomic regions from SNP 100896 to 101496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,390 DEBUG Processing 265/698 atomic regions from SNP 79431 to 80031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,449 DEBUG Processing 392/741 atomic regions from SNP 117555 to 118155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,543 DEBUG Processing 338/727 atomic regions from SNP 101196 to 101796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,545 DEBUG Processing 724/847 atomic regions from SNP 217094 to 217694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,649 DEBUG Processing 266/698 atomic regions from SNP 79731 to 80331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:10,725 DEBUG Processing 393/741 atomic regions from SNP 117855 to 118455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:10,799 DEBUG Processing 339/727 atomic regions from SNP 101496 to 102096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:10,820 DEBUG Processing 725/847 atomic regions from SNP 217394 to 217994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:10,912 DEBUG Processing 267/698 atomic regions from SNP 80031 to 80631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,027 DEBUG Processing 394/741 atomic regions from SNP 118155 to 118755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,054 DEBUG Processing 340/727 atomic regions from SNP 101796 to 102396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,115 DEBUG Processing 726/847 atomic regions from SNP 217694 to 218294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,162 DEBUG Processing 268/698 atomic regions from SNP 80331 to 80931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,281 DEBUG Processing 395/741 atomic regions from SNP 118455 to 119055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,309 DEBUG Processing 341/727 atomic regions from SNP 102096 to 102696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,411 DEBUG Processing 727/847 atomic regions from SNP 217994 to 218594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,413 DEBUG Processing 269/698 atomic regions from SNP 80631 to 81231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,539 DEBUG Processing 396/741 atomic regions from SNP 118755 to 119355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,565 DEBUG Processing 342/727 atomic regions from SNP 102396 to 102996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,663 DEBUG Processing 270/698 atomic regions from SNP 80931 to 81531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,676 DEBUG Processing 728/847 atomic regions from SNP 218294 to 218894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:11,801 DEBUG Processing 397/741 atomic regions from SNP 119055 to 119655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:11,824 DEBUG Processing 343/727 atomic regions from SNP 102696 to 103296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:11,942 DEBUG Processing 271/698 atomic regions from SNP 81231 to 81831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:11,966 DEBUG Processing 729/847 atomic regions from SNP 218594 to 219194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,055 DEBUG Processing 398/741 atomic regions from SNP 119355 to 119955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,081 DEBUG Processing 344/727 atomic regions from SNP 102996 to 103596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,223 DEBUG Processing 272/698 atomic regions from SNP 81531 to 82131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,227 DEBUG Processing 730/847 atomic regions from SNP 218894 to 219494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,310 DEBUG Processing 399/741 atomic regions from SNP 119655 to 120255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,336 DEBUG Processing 345/727 atomic regions from SNP 103296 to 103896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,473 DEBUG Processing 273/698 atomic regions from SNP 81831 to 82431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,483 DEBUG Processing 731/847 atomic regions from SNP 219194 to 219794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,569 DEBUG Processing 400/741 atomic regions from SNP 119955 to 120555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,593 DEBUG Processing 346/727 atomic regions from SNP 103596 to 104196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,729 DEBUG Processing 274/698 atomic regions from SNP 82131 to 82731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:12,748 DEBUG Processing 732/847 atomic regions from SNP 219494 to 220094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:12,831 DEBUG Processing 401/741 atomic regions from SNP 120255 to 120855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:12,855 DEBUG Processing 347/727 atomic regions from SNP 103896 to 104496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:12,982 DEBUG Processing 275/698 atomic regions from SNP 82431 to 83031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,016 DEBUG Processing 733/847 atomic regions from SNP 219794 to 220394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,082 DEBUG Processing 402/741 atomic regions from SNP 120555 to 121155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,107 DEBUG Processing 348/727 atomic regions from SNP 104196 to 104796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,239 DEBUG Processing 276/698 atomic regions from SNP 82731 to 83331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,281 DEBUG Processing 734/847 atomic regions from SNP 220094 to 220694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,344 DEBUG Processing 403/741 atomic regions from SNP 120855 to 121455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,366 DEBUG Processing 349/727 atomic regions from SNP 104496 to 105096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,502 DEBUG Processing 277/698 atomic regions from SNP 83031 to 83631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,551 DEBUG Processing 735/847 atomic regions from SNP 220394 to 220994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,607 DEBUG Processing 404/741 atomic regions from SNP 121155 to 121755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,628 DEBUG Processing 350/727 atomic regions from SNP 104796 to 105396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:13,754 DEBUG Processing 278/698 atomic regions from SNP 83331 to 83931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:13,815 DEBUG Processing 736/847 atomic regions from SNP 220694 to 221294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:13,858 DEBUG Processing 405/741 atomic regions from SNP 121455 to 122055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:13,882 DEBUG Processing 351/727 atomic regions from SNP 105096 to 105696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,008 DEBUG Processing 279/698 atomic regions from SNP 83631 to 84231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,074 DEBUG Processing 737/847 atomic regions from SNP 220994 to 221594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,112 DEBUG Processing 406/741 atomic regions from SNP 121755 to 122355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,135 DEBUG Processing 352/727 atomic regions from SNP 105396 to 105996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,254 DEBUG Processing 280/698 atomic regions from SNP 83931 to 84531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,329 DEBUG Processing 738/847 atomic regions from SNP 221294 to 221894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,365 DEBUG Processing 407/741 atomic regions from SNP 122055 to 122655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,386 DEBUG Processing 353/727 atomic regions from SNP 105696 to 106296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,504 DEBUG Processing 281/698 atomic regions from SNP 84231 to 84831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,591 DEBUG Processing 739/847 atomic regions from SNP 221594 to 222194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,616 DEBUG Processing 408/741 atomic regions from SNP 122355 to 122955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,641 DEBUG Processing 354/727 atomic regions from SNP 105996 to 106596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:14,755 DEBUG Processing 282/698 atomic regions from SNP 84531 to 85131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:14,848 DEBUG Processing 740/847 atomic regions from SNP 221894 to 222494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:14,865 DEBUG Processing 409/741 atomic regions from SNP 122655 to 123255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:14,888 DEBUG Processing 355/727 atomic regions from SNP 106296 to 106896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,009 DEBUG Processing 283/698 atomic regions from SNP 84831 to 85431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,106 DEBUG Processing 741/847 atomic regions from SNP 222194 to 222794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,114 DEBUG Processing 410/741 atomic regions from SNP 122955 to 123555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,139 DEBUG Processing 356/727 atomic regions from SNP 106596 to 107196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,263 DEBUG Processing 284/698 atomic regions from SNP 85131 to 85731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,365 DEBUG Processing 742/847 atomic regions from SNP 222494 to 223094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,379 DEBUG Processing 411/741 atomic regions from SNP 123255 to 123855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,387 DEBUG Processing 357/727 atomic regions from SNP 106896 to 107496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,535 DEBUG Processing 285/698 atomic regions from SNP 85431 to 86031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,624 DEBUG Processing 412/741 atomic regions from SNP 123555 to 124155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,624 DEBUG Processing 743/847 atomic regions from SNP 222794 to 223394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,637 DEBUG Processing 358/727 atomic regions from SNP 107196 to 107796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:15,785 DEBUG Processing 286/698 atomic regions from SNP 85731 to 86331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:15,875 DEBUG Processing 413/741 atomic regions from SNP 123855 to 124455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:15,885 DEBUG Processing 744/847 atomic regions from SNP 223094 to 223694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:15,888 DEBUG Processing 359/727 atomic regions from SNP 107496 to 108096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,038 DEBUG Processing 287/698 atomic regions from SNP 86031 to 86631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,122 DEBUG Processing 414/741 atomic regions from SNP 124155 to 124755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,139 DEBUG Processing 360/727 atomic regions from SNP 107796 to 108396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,145 DEBUG Processing 745/847 atomic regions from SNP 223394 to 223994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,289 DEBUG Processing 288/698 atomic regions from SNP 86331 to 86931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,367 DEBUG Processing 415/741 atomic regions from SNP 124455 to 125055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,387 DEBUG Processing 361/727 atomic regions from SNP 108096 to 108696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,404 DEBUG Processing 746/847 atomic regions from SNP 223694 to 224294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,547 DEBUG Processing 289/698 atomic regions from SNP 86631 to 87231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,618 DEBUG Processing 416/741 atomic regions from SNP 124755 to 125355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,638 DEBUG Processing 362/727 atomic regions from SNP 108396 to 108996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,665 DEBUG Processing 747/847 atomic regions from SNP 223994 to 224594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:16,806 DEBUG Processing 290/698 atomic regions from SNP 86931 to 87531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:16,868 DEBUG Processing 417/741 atomic regions from SNP 125055 to 125655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:16,884 DEBUG Processing 363/727 atomic regions from SNP 108696 to 109296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:16,923 DEBUG Processing 748/847 atomic regions from SNP 224294 to 224894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,070 DEBUG Processing 291/698 atomic regions from SNP 87231 to 87831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,129 DEBUG Processing 418/741 atomic regions from SNP 125355 to 125955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,132 DEBUG Processing 364/727 atomic regions from SNP 108996 to 109596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,181 DEBUG Processing 749/847 atomic regions from SNP 224594 to 225194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,332 DEBUG Processing 292/698 atomic regions from SNP 87531 to 88131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,387 DEBUG Processing 365/727 atomic regions from SNP 109296 to 109896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,410 DEBUG Processing 419/741 atomic regions from SNP 125655 to 126255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,438 DEBUG Processing 750/847 atomic regions from SNP 224894 to 225494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,583 DEBUG Processing 293/698 atomic regions from SNP 87831 to 88431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,646 DEBUG Processing 366/727 atomic regions from SNP 109596 to 110196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,697 DEBUG Processing 420/741 atomic regions from SNP 125955 to 126555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:17,699 DEBUG Processing 751/847 atomic regions from SNP 225194 to 225794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,831 DEBUG Processing 294/698 atomic regions from SNP 88131 to 88731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:17,892 DEBUG Processing 367/727 atomic regions from SNP 109896 to 110496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:17,955 DEBUG Processing 752/847 atomic regions from SNP 225494 to 226094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:17,960 DEBUG Processing 421/741 atomic regions from SNP 126255 to 126855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,080 DEBUG Processing 295/698 atomic regions from SNP 88431 to 89031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,139 DEBUG Processing 368/727 atomic regions from SNP 110196 to 110796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,204 DEBUG Processing 422/741 atomic regions from SNP 126555 to 127155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,210 DEBUG Processing 753/847 atomic regions from SNP 225794 to 226394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,331 DEBUG Processing 296/698 atomic regions from SNP 88731 to 89331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,387 DEBUG Processing 369/727 atomic regions from SNP 110496 to 111096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,459 DEBUG Processing 423/741 atomic regions from SNP 126855 to 127455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,468 DEBUG Processing 754/847 atomic regions from SNP 226094 to 226694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,588 DEBUG Processing 297/698 atomic regions from SNP 89031 to 89631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,644 DEBUG Processing 370/727 atomic regions from SNP 110796 to 111396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,724 DEBUG Processing 755/847 atomic regions from SNP 226394 to 226994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:18,726 DEBUG Processing 424/741 atomic regions from SNP 127155 to 127755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,838 DEBUG Processing 298/698 atomic regions from SNP 89331 to 89931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:18,892 DEBUG Processing 371/727 atomic regions from SNP 111096 to 111696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:18,979 DEBUG Processing 425/741 atomic regions from SNP 127455 to 128055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:18,984 DEBUG Processing 756/847 atomic regions from SNP 226694 to 227294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,091 DEBUG Processing 299/698 atomic regions from SNP 89631 to 90231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,164 DEBUG Processing 372/727 atomic regions from SNP 111396 to 111996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,225 DEBUG Processing 426/741 atomic regions from SNP 127755 to 128355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,241 DEBUG Processing 757/847 atomic regions from SNP 226994 to 227594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,341 DEBUG Processing 300/698 atomic regions from SNP 89931 to 90531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,440 DEBUG Processing 373/727 atomic regions from SNP 111696 to 112296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,482 DEBUG Processing 427/741 atomic regions from SNP 128055 to 128655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,507 DEBUG Processing 758/847 atomic regions from SNP 227294 to 227894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,592 DEBUG Processing 301/698 atomic regions from SNP 90231 to 90831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:19,724 DEBUG Processing 374/727 atomic regions from SNP 111996 to 112596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:19,755 DEBUG Processing 428/741 atomic regions from SNP 128355 to 128955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:19,783 DEBUG Processing 759/847 atomic regions from SNP 227594 to 228194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:19,843 DEBUG Processing 302/698 atomic regions from SNP 90531 to 91131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,016 DEBUG Processing 375/727 atomic regions from SNP 112296 to 112896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,038 DEBUG Processing 429/741 atomic regions from SNP 128655 to 129255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,098 DEBUG Processing 760/847 atomic regions from SNP 227894 to 228494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,118 DEBUG Processing 303/698 atomic regions from SNP 90831 to 91431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,307 DEBUG Processing 376/727 atomic regions from SNP 112596 to 113196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,310 DEBUG Processing 430/741 atomic regions from SNP 128955 to 129555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,376 DEBUG Processing 304/698 atomic regions from SNP 91131 to 91731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,390 DEBUG Processing 761/847 atomic regions from SNP 228194 to 228794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,593 DEBUG Processing 377/727 atomic regions from SNP 112896 to 113496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,594 DEBUG Processing 431/741 atomic regions from SNP 129255 to 129855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,645 DEBUG Processing 305/698 atomic regions from SNP 91431 to 92031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,671 DEBUG Processing 762/847 atomic regions from SNP 228494 to 229094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:20,848 DEBUG Processing 432/741 atomic regions from SNP 129555 to 130155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:20,877 DEBUG Processing 378/727 atomic regions from SNP 113196 to 113796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:20,924 DEBUG Processing 306/698 atomic regions from SNP 91731 to 92331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:20,941 DEBUG Processing 763/847 atomic regions from SNP 228794 to 229394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,120 DEBUG Processing 433/741 atomic regions from SNP 129855 to 130455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,150 DEBUG Processing 379/727 atomic regions from SNP 113496 to 114096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,195 DEBUG Processing 307/698 atomic regions from SNP 92031 to 92631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,205 DEBUG Processing 764/847 atomic regions from SNP 229094 to 229694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,395 DEBUG Processing 434/741 atomic regions from SNP 130155 to 130755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,404 DEBUG Processing 380/727 atomic regions from SNP 113796 to 114396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,482 DEBUG Processing 308/698 atomic regions from SNP 92331 to 92931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,484 DEBUG Processing 765/847 atomic regions from SNP 229394 to 229994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,671 DEBUG Processing 435/741 atomic regions from SNP 130455 to 131055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,694 DEBUG Processing 381/727 atomic regions from SNP 114096 to 114696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:21,759 DEBUG Processing 766/847 atomic regions from SNP 229694 to 230294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:21,763 DEBUG Processing 309/698 atomic regions from SNP 92631 to 93231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:21,962 DEBUG Processing 436/741 atomic regions from SNP 130755 to 131355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:21,992 DEBUG Processing 382/727 atomic regions from SNP 114396 to 114996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,034 DEBUG Processing 767/847 atomic regions from SNP 229994 to 230594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,049 DEBUG Processing 310/698 atomic regions from SNP 92931 to 93531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,223 DEBUG Processing 437/741 atomic regions from SNP 131055 to 131655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,273 DEBUG Processing 383/727 atomic regions from SNP 114696 to 115296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,305 DEBUG Processing 768/847 atomic regions from SNP 230294 to 230894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,341 DEBUG Processing 311/698 atomic regions from SNP 93231 to 93831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,466 DEBUG Processing 438/741 atomic regions from SNP 131355 to 131955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,527 DEBUG Processing 384/727 atomic regions from SNP 114996 to 115596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,571 DEBUG Processing 769/847 atomic regions from SNP 230594 to 231194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,634 DEBUG Processing 312/698 atomic regions from SNP 93531 to 94131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,704 DEBUG Processing 439/741 atomic regions from SNP 131655 to 132255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:22,781 DEBUG Processing 385/727 atomic regions from SNP 115296 to 115896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:22,852 DEBUG Processing 770/847 atomic regions from SNP 230894 to 231494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:22,917 DEBUG Processing 313/698 atomic regions from SNP 93831 to 94431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:22,947 DEBUG Processing 440/741 atomic regions from SNP 131955 to 132555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,049 DEBUG Processing 386/727 atomic regions from SNP 115596 to 116196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,139 DEBUG Processing 771/847 atomic regions from SNP 231194 to 231794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,169 DEBUG Processing 314/698 atomic regions from SNP 94131 to 94731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,183 DEBUG Processing 441/741 atomic regions from SNP 132255 to 132855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,323 DEBUG Processing 387/727 atomic regions from SNP 115896 to 116496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,432 DEBUG Processing 315/698 atomic regions from SNP 94431 to 95031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,436 DEBUG Processing 772/847 atomic regions from SNP 231494 to 232094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,437 DEBUG Processing 442/741 atomic regions from SNP 132555 to 133155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,604 DEBUG Processing 388/727 atomic regions from SNP 116196 to 116796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,692 DEBUG Processing 316/698 atomic regions from SNP 94731 to 95331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,700 DEBUG Processing 773/847 atomic regions from SNP 231794 to 232394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,708 DEBUG Processing 443/741 atomic regions from SNP 132855 to 133455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:23,852 DEBUG Processing 389/727 atomic regions from SNP 116496 to 117096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:23,952 DEBUG Processing 774/847 atomic regions from SNP 232094 to 232694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:23,958 DEBUG Processing 317/698 atomic regions from SNP 95031 to 95631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:23,992 DEBUG Processing 444/741 atomic regions from SNP 133155 to 133755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,095 DEBUG Processing 390/727 atomic regions from SNP 116796 to 117396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,205 DEBUG Processing 775/847 atomic regions from SNP 232394 to 232994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,213 DEBUG Processing 318/698 atomic regions from SNP 95331 to 95931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,279 DEBUG Processing 445/741 atomic regions from SNP 133455 to 134055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,339 DEBUG Processing 391/727 atomic regions from SNP 117096 to 117696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,459 DEBUG Processing 776/847 atomic regions from SNP 232694 to 233294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,462 DEBUG Processing 319/698 atomic regions from SNP 95631 to 96231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,565 DEBUG Processing 446/741 atomic regions from SNP 133755 to 134355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,587 DEBUG Processing 392/727 atomic regions from SNP 117396 to 117996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,714 DEBUG Processing 777/847 atomic regions from SNP 232994 to 233594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:24,718 DEBUG Processing 320/698 atomic regions from SNP 95931 to 96531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,833 DEBUG Processing 393/727 atomic regions from SNP 117696 to 118296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:24,852 DEBUG Processing 447/741 atomic regions from SNP 134055 to 134655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:24,979 DEBUG Processing 321/698 atomic regions from SNP 96231 to 96831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:24,980 DEBUG Processing 778/847 atomic regions from SNP 233294 to 233894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,081 DEBUG Processing 394/727 atomic regions from SNP 117996 to 118596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,142 DEBUG Processing 448/741 atomic regions from SNP 134355 to 134955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,230 DEBUG Processing 322/698 atomic regions from SNP 96531 to 97131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,238 DEBUG Processing 779/847 atomic regions from SNP 233594 to 234194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,321 DEBUG Processing 395/727 atomic regions from SNP 118296 to 118896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,424 DEBUG Processing 449/741 atomic regions from SNP 134655 to 135255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,484 DEBUG Processing 323/698 atomic regions from SNP 96831 to 97431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,496 DEBUG Processing 780/847 atomic regions from SNP 233894 to 234494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,565 DEBUG Processing 396/727 atomic regions from SNP 118596 to 119196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,710 DEBUG Processing 450/741 atomic regions from SNP 134955 to 135555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:25,738 DEBUG Processing 324/698 atomic regions from SNP 97131 to 97731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,754 DEBUG Processing 781/847 atomic regions from SNP 234194 to 234794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:25,808 DEBUG Processing 397/727 atomic regions from SNP 118896 to 119496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:25,991 DEBUG Processing 325/698 atomic regions from SNP 97431 to 98031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:25,995 DEBUG Processing 451/741 atomic regions from SNP 135255 to 135855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,012 DEBUG Processing 782/847 atomic regions from SNP 234494 to 235094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,050 DEBUG Processing 398/727 atomic regions from SNP 119196 to 119796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,243 DEBUG Processing 326/698 atomic regions from SNP 97731 to 98331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,277 DEBUG Processing 783/847 atomic regions from SNP 234794 to 235394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,279 DEBUG Processing 452/741 atomic regions from SNP 135555 to 136155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,298 DEBUG Processing 399/727 atomic regions from SNP 119496 to 120096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,507 DEBUG Processing 327/698 atomic regions from SNP 98031 to 98631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,549 DEBUG Processing 784/847 atomic regions from SNP 235094 to 235694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,553 DEBUG Processing 400/727 atomic regions from SNP 119796 to 120396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,571 DEBUG Processing 453/741 atomic regions from SNP 135855 to 136455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:26,760 DEBUG Processing 328/698 atomic regions from SNP 98331 to 98931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:26,809 DEBUG Processing 785/847 atomic regions from SNP 235394 to 235994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:26,826 DEBUG Processing 401/727 atomic regions from SNP 120096 to 120696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:26,856 DEBUG Processing 454/741 atomic regions from SNP 136155 to 136755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,012 DEBUG Processing 329/698 atomic regions from SNP 98631 to 99231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,073 DEBUG Processing 786/847 atomic regions from SNP 235694 to 236294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,105 DEBUG Processing 402/727 atomic regions from SNP 120396 to 120996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,156 DEBUG Processing 455/741 atomic regions from SNP 136455 to 137055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,266 DEBUG Processing 330/698 atomic regions from SNP 98931 to 99531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,327 DEBUG Processing 787/847 atomic regions from SNP 235994 to 236594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,349 DEBUG Processing 403/727 atomic regions from SNP 120696 to 121296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,422 DEBUG Processing 456/741 atomic regions from SNP 136755 to 137355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,526 DEBUG Processing 331/698 atomic regions from SNP 99231 to 99831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,586 DEBUG Processing 788/847 atomic regions from SNP 236294 to 236894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,592 DEBUG Processing 404/727 atomic regions from SNP 120996 to 121596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,673 DEBUG Processing 457/741 atomic regions from SNP 137055 to 137655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:27,782 DEBUG Processing 332/698 atomic regions from SNP 99531 to 100131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:27,835 DEBUG Processing 405/727 atomic regions from SNP 121296 to 121896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:27,847 DEBUG Processing 789/847 atomic regions from SNP 236594 to 237194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:27,933 DEBUG Processing 458/741 atomic regions from SNP 137355 to 137955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,108 DEBUG Processing 406/727 atomic regions from SNP 121596 to 122196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,118 DEBUG Processing 333/698 atomic regions from SNP 99831 to 100431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,167 DEBUG Processing 790/847 atomic regions from SNP 236894 to 237494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,229 DEBUG Processing 459/741 atomic regions from SNP 137655 to 138255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,348 DEBUG Processing 407/727 atomic regions from SNP 121896 to 122496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,415 DEBUG Processing 334/698 atomic regions from SNP 100131 to 100731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,420 DEBUG Processing 791/847 atomic regions from SNP 237194 to 237794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,495 DEBUG Processing 460/741 atomic regions from SNP 137955 to 138555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,589 DEBUG Processing 408/727 atomic regions from SNP 122196 to 122796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,679 DEBUG Processing 335/698 atomic regions from SNP 100431 to 101031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,685 DEBUG Processing 792/847 atomic regions from SNP 237494 to 238094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:28,764 DEBUG Processing 461/741 atomic regions from SNP 138255 to 138855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:28,839 DEBUG Processing 409/727 atomic regions from SNP 122496 to 123096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:28,948 DEBUG Processing 336/698 atomic regions from SNP 100731 to 101331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:28,954 DEBUG Processing 793/847 atomic regions from SNP 237794 to 238394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,016 DEBUG Processing 462/741 atomic regions from SNP 138555 to 139155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,087 DEBUG Processing 410/727 atomic regions from SNP 122796 to 123396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,199 DEBUG Processing 337/698 atomic regions from SNP 101031 to 101631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,212 DEBUG Processing 794/847 atomic regions from SNP 238094 to 238694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,272 DEBUG Processing 463/741 atomic regions from SNP 138855 to 139455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,334 DEBUG Processing 411/727 atomic regions from SNP 123096 to 123696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,455 DEBUG Processing 338/698 atomic regions from SNP 101331 to 101931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,472 DEBUG Processing 795/847 atomic regions from SNP 238394 to 238994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,528 DEBUG Processing 464/741 atomic regions from SNP 139155 to 139755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,585 DEBUG Processing 412/727 atomic regions from SNP 123396 to 123996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,724 DEBUG Processing 339/698 atomic regions from SNP 101631 to 102231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,731 DEBUG Processing 796/847 atomic regions from SNP 238694 to 239294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:29,776 DEBUG Processing 465/741 atomic regions from SNP 139455 to 140055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:29,836 DEBUG Processing 413/727 atomic regions from SNP 123696 to 124296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:29,983 DEBUG Processing 340/698 atomic regions from SNP 101931 to 102531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:29,997 DEBUG Processing 797/847 atomic regions from SNP 238994 to 239594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,037 DEBUG Processing 466/741 atomic regions from SNP 139755 to 140355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,100 DEBUG Processing 414/727 atomic regions from SNP 123996 to 124596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,243 DEBUG Processing 341/698 atomic regions from SNP 102231 to 102831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,265 DEBUG Processing 798/847 atomic regions from SNP 239294 to 239894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,293 DEBUG Processing 467/741 atomic regions from SNP 140055 to 140655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,356 DEBUG Processing 415/727 atomic regions from SNP 124296 to 124896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,495 DEBUG Processing 342/698 atomic regions from SNP 102531 to 103131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,529 DEBUG Processing 799/847 atomic regions from SNP 239594 to 240194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,547 DEBUG Processing 468/741 atomic regions from SNP 140355 to 140955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,606 DEBUG Processing 416/727 atomic regions from SNP 124596 to 125196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:30,760 DEBUG Processing 343/698 atomic regions from SNP 102831 to 103431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:30,791 DEBUG Processing 800/847 atomic regions from SNP 239894 to 240494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:30,795 DEBUG Processing 469/741 atomic regions from SNP 140655 to 141255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:30,854 DEBUG Processing 417/727 atomic regions from SNP 124896 to 125496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,009 DEBUG Processing 344/698 atomic regions from SNP 103131 to 103731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,049 DEBUG Processing 470/741 atomic regions from SNP 140955 to 141555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,049 DEBUG Processing 801/847 atomic regions from SNP 240194 to 240794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,099 DEBUG Processing 418/727 atomic regions from SNP 125196 to 125796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,257 DEBUG Processing 345/698 atomic regions from SNP 103431 to 104031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,310 DEBUG Processing 802/847 atomic regions from SNP 240494 to 241094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,318 DEBUG Processing 471/741 atomic regions from SNP 141255 to 141855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,348 DEBUG Processing 419/727 atomic regions from SNP 125496 to 126096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,516 DEBUG Processing 346/698 atomic regions from SNP 103731 to 104331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,569 DEBUG Processing 803/847 atomic regions from SNP 240794 to 241394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,579 DEBUG Processing 472/741 atomic regions from SNP 141555 to 142155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:31,595 DEBUG Processing 420/727 atomic regions from SNP 125796 to 126396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,767 DEBUG Processing 347/698 atomic regions from SNP 104031 to 104631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:31,831 DEBUG Processing 804/847 atomic regions from SNP 241094 to 241694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:31,844 DEBUG Processing 421/727 atomic regions from SNP 126096 to 126696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:31,854 DEBUG Processing 473/741 atomic regions from SNP 141855 to 142455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,017 DEBUG Processing 348/698 atomic regions from SNP 104331 to 104931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,092 DEBUG Processing 805/847 atomic regions from SNP 241394 to 241994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,093 DEBUG Processing 422/727 atomic regions from SNP 126396 to 126996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,109 DEBUG Processing 474/741 atomic regions from SNP 142155 to 142755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,268 DEBUG Processing 349/698 atomic regions from SNP 104631 to 105231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,346 DEBUG Processing 423/727 atomic regions from SNP 126696 to 127296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,357 DEBUG Processing 806/847 atomic regions from SNP 241694 to 242294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,366 DEBUG Processing 475/741 atomic regions from SNP 142455 to 143055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,519 DEBUG Processing 350/698 atomic regions from SNP 104931 to 105531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,595 DEBUG Processing 424/727 atomic regions from SNP 126996 to 127596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,619 DEBUG Processing 476/741 atomic regions from SNP 142755 to 143355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,621 DEBUG Processing 807/847 atomic regions from SNP 241994 to 242594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:32,767 DEBUG Processing 351/698 atomic regions from SNP 105231 to 105831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:32,844 DEBUG Processing 425/727 atomic regions from SNP 127296 to 127896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:32,874 DEBUG Processing 477/741 atomic regions from SNP 143055 to 143655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:32,884 DEBUG Processing 808/847 atomic regions from SNP 242294 to 242894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,017 DEBUG Processing 352/698 atomic regions from SNP 105531 to 106131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,091 DEBUG Processing 426/727 atomic regions from SNP 127596 to 128196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,124 DEBUG Processing 478/741 atomic regions from SNP 143355 to 143955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,146 DEBUG Processing 809/847 atomic regions from SNP 242594 to 243194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,266 DEBUG Processing 353/698 atomic regions from SNP 105831 to 106431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,336 DEBUG Processing 427/727 atomic regions from SNP 127896 to 128496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,390 DEBUG Processing 479/741 atomic regions from SNP 143655 to 144255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,404 DEBUG Processing 810/847 atomic regions from SNP 242894 to 243494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,513 DEBUG Processing 354/698 atomic regions from SNP 106131 to 106731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,603 DEBUG Processing 428/727 atomic regions from SNP 128196 to 128796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,636 DEBUG Processing 480/741 atomic regions from SNP 143955 to 144555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,662 DEBUG Processing 811/847 atomic regions from SNP 243194 to 243794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,753 DEBUG Processing 355/698 atomic regions from SNP 106431 to 107031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:33,868 DEBUG Processing 429/727 atomic regions from SNP 128496 to 129096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:33,885 DEBUG Processing 481/741 atomic regions from SNP 144255 to 144855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:33,917 DEBUG Processing 812/847 atomic regions from SNP 243494 to 244094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:33,993 DEBUG Processing 356/698 atomic regions from SNP 106731 to 107331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,114 DEBUG Processing 430/727 atomic regions from SNP 128796 to 129396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,134 DEBUG Processing 482/741 atomic regions from SNP 144555 to 145155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,175 DEBUG Processing 813/847 atomic regions from SNP 243794 to 244394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,236 DEBUG Processing 357/698 atomic regions from SNP 107031 to 107631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,363 DEBUG Processing 431/727 atomic regions from SNP 129096 to 129696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,393 DEBUG Processing 483/741 atomic regions from SNP 144855 to 145455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,432 DEBUG Processing 814/847 atomic regions from SNP 244094 to 244694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,481 DEBUG Processing 358/698 atomic regions from SNP 107331 to 107931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,604 DEBUG Processing 432/727 atomic regions from SNP 129396 to 129996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,652 DEBUG Processing 484/741 atomic regions from SNP 145155 to 145755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,689 DEBUG Processing 815/847 atomic regions from SNP 244394 to 244994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,728 DEBUG Processing 359/698 atomic regions from SNP 107631 to 108231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:34,843 DEBUG Processing 433/727 atomic regions from SNP 129696 to 130296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:34,899 DEBUG Processing 485/741 atomic regions from SNP 145455 to 146055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:34,947 DEBUG Processing 816/847 atomic regions from SNP 244694 to 245294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:34,980 DEBUG Processing 360/698 atomic regions from SNP 107931 to 108531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,111 DEBUG Processing 434/727 atomic regions from SNP 129996 to 130596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,153 DEBUG Processing 486/741 atomic regions from SNP 145755 to 146355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,206 DEBUG Processing 817/847 atomic regions from SNP 244994 to 245594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,228 DEBUG Processing 361/698 atomic regions from SNP 108231 to 108831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,365 DEBUG Processing 435/727 atomic regions from SNP 130296 to 130896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,396 DEBUG Processing 487/741 atomic regions from SNP 146055 to 146655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,456 DEBUG Processing 818/847 atomic regions from SNP 245294 to 245894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,472 DEBUG Processing 362/698 atomic regions from SNP 108531 to 109131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,624 DEBUG Processing 436/727 atomic regions from SNP 130596 to 131196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,629 DEBUG Processing 488/741 atomic regions from SNP 146355 to 146955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,704 DEBUG Processing 819/847 atomic regions from SNP 245594 to 246194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:35,711 DEBUG Processing 363/698 atomic regions from SNP 108831 to 109431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,858 DEBUG Processing 437/727 atomic regions from SNP 130896 to 131496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:35,865 DEBUG Processing 489/741 atomic regions from SNP 146655 to 147255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:35,959 DEBUG Processing 364/698 atomic regions from SNP 109131 to 109731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:35,959 DEBUG Processing 820/847 atomic regions from SNP 245894 to 246494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,101 DEBUG Processing 438/727 atomic regions from SNP 131196 to 131796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,106 DEBUG Processing 490/741 atomic regions from SNP 146955 to 147555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,213 DEBUG Processing 365/698 atomic regions from SNP 109431 to 110031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,220 DEBUG Processing 821/847 atomic regions from SNP 246194 to 246794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,337 DEBUG Processing 439/727 atomic regions from SNP 131496 to 132096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,347 DEBUG Processing 491/741 atomic regions from SNP 147255 to 147855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,472 DEBUG Processing 366/698 atomic regions from SNP 109731 to 110331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,480 DEBUG Processing 822/847 atomic regions from SNP 246494 to 247094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,571 DEBUG Processing 440/727 atomic regions from SNP 131796 to 132396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,586 DEBUG Processing 492/741 atomic regions from SNP 147555 to 148155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,705 DEBUG Processing 367/698 atomic regions from SNP 110031 to 110631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:36,724 DEBUG Processing 823/847 atomic regions from SNP 246794 to 247394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,814 DEBUG Processing 441/727 atomic regions from SNP 132096 to 132696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:36,830 DEBUG Processing 493/741 atomic regions from SNP 147855 to 148455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:36,966 DEBUG Processing 824/847 atomic regions from SNP 247094 to 247694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:36,970 DEBUG Processing 368/698 atomic regions from SNP 110331 to 110931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,060 DEBUG Processing 442/727 atomic regions from SNP 132396 to 132996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,084 DEBUG Processing 494/741 atomic regions from SNP 148155 to 148755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,212 DEBUG Processing 369/698 atomic regions from SNP 110631 to 111231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,214 DEBUG Processing 825/847 atomic regions from SNP 247394 to 247994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,315 DEBUG Processing 443/727 atomic regions from SNP 132696 to 133296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,340 DEBUG Processing 495/741 atomic regions from SNP 148455 to 149055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,463 DEBUG Processing 370/698 atomic regions from SNP 110931 to 111531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,474 DEBUG Processing 826/847 atomic regions from SNP 247694 to 248294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,572 DEBUG Processing 444/727 atomic regions from SNP 132996 to 133596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,598 DEBUG Processing 496/741 atomic regions from SNP 148755 to 149355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,717 DEBUG Processing 371/698 atomic regions from SNP 111231 to 111831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,735 DEBUG Processing 827/847 atomic regions from SNP 247994 to 248594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:37,818 DEBUG Processing 445/727 atomic regions from SNP 133296 to 133896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:37,847 DEBUG Processing 497/741 atomic regions from SNP 149055 to 149655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:37,968 DEBUG Processing 372/698 atomic regions from SNP 111531 to 112131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:37,993 DEBUG Processing 828/847 atomic regions from SNP 248294 to 248894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,066 DEBUG Processing 446/727 atomic regions from SNP 133596 to 134196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,096 DEBUG Processing 498/741 atomic regions from SNP 149355 to 149955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,220 DEBUG Processing 373/698 atomic regions from SNP 111831 to 112431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,254 DEBUG Processing 829/847 atomic regions from SNP 248594 to 249194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,310 DEBUG Processing 447/727 atomic regions from SNP 133896 to 134496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,337 DEBUG Processing 499/741 atomic regions from SNP 149655 to 150255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,464 DEBUG Processing 374/698 atomic regions from SNP 112131 to 112731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,511 DEBUG Processing 830/847 atomic regions from SNP 248894 to 249494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,547 DEBUG Processing 448/727 atomic regions from SNP 134196 to 134796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,573 DEBUG Processing 500/741 atomic regions from SNP 149955 to 150555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,712 DEBUG Processing 375/698 atomic regions from SNP 112431 to 113031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:38,790 DEBUG Processing 449/727 atomic regions from SNP 134496 to 135096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:38,794 DEBUG Processing 831/847 atomic regions from SNP 249194 to 249794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:38,833 DEBUG Processing 501/741 atomic regions from SNP 150255 to 150855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:38,955 DEBUG Processing 376/698 atomic regions from SNP 112731 to 113331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,036 DEBUG Processing 450/727 atomic regions from SNP 134796 to 135396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,057 DEBUG Processing 832/847 atomic regions from SNP 249494 to 250094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,071 DEBUG Processing 502/741 atomic regions from SNP 150555 to 151155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,196 DEBUG Processing 377/698 atomic regions from SNP 113031 to 113631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,290 DEBUG Processing 451/727 atomic regions from SNP 135096 to 135696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,313 DEBUG Processing 503/741 atomic regions from SNP 150855 to 151455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,313 DEBUG Processing 833/847 atomic regions from SNP 249794 to 250394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,435 DEBUG Processing 378/698 atomic regions from SNP 113331 to 113931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,554 DEBUG Processing 504/741 atomic regions from SNP 151155 to 151755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,562 DEBUG Processing 452/727 atomic regions from SNP 135396 to 135996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,563 DEBUG Processing 834/847 atomic regions from SNP 250094 to 250694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,675 DEBUG Processing 379/698 atomic regions from SNP 113631 to 114231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:39,799 DEBUG Processing 505/741 atomic regions from SNP 151455 to 152055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:39,816 DEBUG Processing 835/847 atomic regions from SNP 250394 to 250994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:39,826 DEBUG Processing 453/727 atomic regions from SNP 135696 to 136296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:39,918 DEBUG Processing 380/698 atomic regions from SNP 113931 to 114531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,040 DEBUG Processing 506/741 atomic regions from SNP 151755 to 152355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,071 DEBUG Processing 836/847 atomic regions from SNP 250694 to 251294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,101 DEBUG Processing 454/727 atomic regions from SNP 135996 to 136596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,156 DEBUG Processing 381/698 atomic regions from SNP 114231 to 114831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,287 DEBUG Processing 507/741 atomic regions from SNP 152055 to 152655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,333 DEBUG Processing 837/847 atomic regions from SNP 250994 to 251594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,385 DEBUG Processing 455/727 atomic regions from SNP 136296 to 136896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,401 DEBUG Processing 382/698 atomic regions from SNP 114531 to 115131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,530 DEBUG Processing 508/741 atomic regions from SNP 152355 to 152955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,588 DEBUG Processing 838/847 atomic regions from SNP 251294 to 251894 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,644 DEBUG Processing 383/698 atomic regions from SNP 114831 to 115431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:40,650 DEBUG Processing 456/727 atomic regions from SNP 136596 to 137196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,771 DEBUG Processing 509/741 atomic regions from SNP 152655 to 153255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:40,843 DEBUG Processing 839/847 atomic regions from SNP 251594 to 252194 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:40,892 DEBUG Processing 457/727 atomic regions from SNP 136896 to 137496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:40,899 DEBUG Processing 384/698 atomic regions from SNP 115131 to 115731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,042 DEBUG Processing 510/741 atomic regions from SNP 152955 to 153555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,097 DEBUG Processing 840/847 atomic regions from SNP 251894 to 252494 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,157 DEBUG Processing 458/727 atomic regions from SNP 137196 to 137796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,176 DEBUG Processing 385/698 atomic regions from SNP 115431 to 116031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,310 DEBUG Processing 511/741 atomic regions from SNP 153255 to 153855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,351 DEBUG Processing 841/847 atomic regions from SNP 252194 to 252794 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,420 DEBUG Processing 386/698 atomic regions from SNP 115731 to 116331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,439 DEBUG Processing 459/727 atomic regions from SNP 137496 to 138096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,558 DEBUG Processing 512/741 atomic regions from SNP 153555 to 154155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,611 DEBUG Processing 842/847 atomic regions from SNP 252494 to 253094 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,671 DEBUG Processing 387/698 atomic regions from SNP 116031 to 116631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,722 DEBUG Processing 460/727 atomic regions from SNP 137796 to 138396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:41,803 DEBUG Processing 513/741 atomic regions from SNP 153855 to 154455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:41,868 DEBUG Processing 843/847 atomic regions from SNP 252794 to 253394 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:41,911 DEBUG Processing 388/698 atomic regions from SNP 116331 to 116931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:41,992 DEBUG Processing 461/727 atomic regions from SNP 138096 to 138696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,042 DEBUG Processing 514/741 atomic regions from SNP 154155 to 154755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,110 DEBUG Processing 844/847 atomic regions from SNP 253094 to 253694 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,141 DEBUG Processing 389/698 atomic regions from SNP 116631 to 117231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,234 DEBUG Processing 462/727 atomic regions from SNP 138396 to 138996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,286 DEBUG Processing 515/741 atomic regions from SNP 154455 to 155055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,367 DEBUG Processing 845/847 atomic regions from SNP 253394 to 253994 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,376 DEBUG Processing 390/698 atomic regions from SNP 116931 to 117531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,482 DEBUG Processing 463/727 atomic regions from SNP 138696 to 139296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,537 DEBUG Processing 516/741 atomic regions from SNP 154755 to 155355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,627 DEBUG Processing 391/698 atomic regions from SNP 117231 to 117831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,640 DEBUG Processing 846/847 atomic regions from SNP 253694 to 254294 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,729 DEBUG Processing 464/727 atomic regions from SNP 138996 to 139596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:42,787 DEBUG Processing 517/741 atomic regions from SNP 155055 to 155655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:42,872 DEBUG Processing 392/698 atomic regions from SNP 117531 to 118131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:42,894 DEBUG Processing 847/847 atomic regions from SNP 253994 to 254594 for chr6 (subchromosome 1 of 1). 2025-01-31 09:51:42,971 DEBUG Processing 465/727 atomic regions from SNP 139296 to 139896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,041 DEBUG Processing 518/741 atomic regions from SNP 155355 to 155955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,042 DEBUG Unique SNPs positions in subchromosome 1: 254595 2025-01-31 09:51:43,132 DEBUG Processing 393/698 atomic regions from SNP 117831 to 118431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,210 DEBUG Processing 466/727 atomic regions from SNP 139596 to 140196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,290 DEBUG Processing 519/741 atomic regions from SNP 155655 to 156255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,388 DEBUG Processing 394/698 atomic regions from SNP 118131 to 118731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,455 DEBUG Processing 467/727 atomic regions from SNP 139896 to 140496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,546 DEBUG Processing 520/741 atomic regions from SNP 155955 to 156555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,638 DEBUG Processing 395/698 atomic regions from SNP 118431 to 119031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,688 DEBUG Processing 468/727 atomic regions from SNP 140196 to 140796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:43,784 DEBUG Processing 521/741 atomic regions from SNP 156255 to 156855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:43,882 DEBUG Processing 396/698 atomic regions from SNP 118731 to 119331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:43,924 DEBUG Processing 469/727 atomic regions from SNP 140496 to 141096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,032 DEBUG Processing 522/741 atomic regions from SNP 156555 to 157155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,124 DEBUG Processing 397/698 atomic regions from SNP 119031 to 119631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,161 DEBUG Processing 470/727 atomic regions from SNP 140796 to 141396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,283 DEBUG Processing 523/741 atomic regions from SNP 156855 to 157455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,368 DEBUG Processing 398/698 atomic regions from SNP 119331 to 119931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,405 DEBUG Processing 471/727 atomic regions from SNP 141096 to 141696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,529 DEBUG Processing 524/741 atomic regions from SNP 157155 to 157755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,611 DEBUG Processing 399/698 atomic regions from SNP 119631 to 120231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,645 DEBUG Processing 472/727 atomic regions from SNP 141396 to 141996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:44,787 DEBUG Processing 525/741 atomic regions from SNP 157455 to 158055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:44,844 DEBUG Processing 400/698 atomic regions from SNP 119931 to 120531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:44,884 DEBUG Processing 473/727 atomic regions from SNP 141696 to 142296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,051 DEBUG Processing 526/741 atomic regions from SNP 157755 to 158355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,104 DEBUG Processing 401/698 atomic regions from SNP 120231 to 120831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,126 DEBUG Processing 474/727 atomic regions from SNP 141996 to 142596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,303 DEBUG Processing 527/741 atomic regions from SNP 158055 to 158655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,354 DEBUG Processing 402/698 atomic regions from SNP 120531 to 121131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,371 DEBUG Processing 475/727 atomic regions from SNP 142296 to 142896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,548 DEBUG Processing 528/741 atomic regions from SNP 158355 to 158955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,595 DEBUG Processing 403/698 atomic regions from SNP 120831 to 121431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,609 DEBUG Processing 476/727 atomic regions from SNP 142596 to 143196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:45,617 DEBUG chr14: Estimating proportion of background vs signal 2025-01-31 09:51:45,781 DEBUG Processing 529/741 atomic regions from SNP 158655 to 159255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:45,831 DEBUG Processing 404/698 atomic regions from SNP 121131 to 121731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:45,845 DEBUG Processing 477/727 atomic regions from SNP 142896 to 143496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,024 DEBUG Processing 530/741 atomic regions from SNP 158955 to 159555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,077 DEBUG Processing 405/698 atomic regions from SNP 121431 to 122031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,088 DEBUG Processing 478/727 atomic regions from SNP 143196 to 143796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,268 DEBUG Processing 531/741 atomic regions from SNP 159255 to 159855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,321 DEBUG Processing 406/698 atomic regions from SNP 121731 to 122331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,327 DEBUG Processing 479/727 atomic regions from SNP 143496 to 144096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,509 DEBUG Processing 532/741 atomic regions from SNP 159555 to 160155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,570 DEBUG Processing 407/698 atomic regions from SNP 122031 to 122631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,585 DEBUG Processing 480/727 atomic regions from SNP 143796 to 144396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,750 DEBUG Processing 533/741 atomic regions from SNP 159855 to 160455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:46,813 DEBUG Processing 408/698 atomic regions from SNP 122331 to 122931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:46,835 DEBUG Processing 481/727 atomic regions from SNP 144096 to 144696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:46,993 DEBUG Processing 534/741 atomic regions from SNP 160155 to 160755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,054 DEBUG Processing 409/698 atomic regions from SNP 122631 to 123231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,073 DEBUG Processing 482/727 atomic regions from SNP 144396 to 144996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,228 DEBUG Processing 535/741 atomic regions from SNP 160455 to 161055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,309 DEBUG Processing 483/727 atomic regions from SNP 144696 to 145296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,318 DEBUG Processing 410/698 atomic regions from SNP 122931 to 123531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,463 DEBUG Processing 536/741 atomic regions from SNP 160755 to 161355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,547 DEBUG Processing 484/727 atomic regions from SNP 144996 to 145596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,562 DEBUG Processing 411/698 atomic regions from SNP 123231 to 123831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,697 DEBUG Processing 537/741 atomic regions from SNP 161055 to 161655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:47,788 DEBUG Processing 485/727 atomic regions from SNP 145296 to 145896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:47,813 DEBUG Processing 412/698 atomic regions from SNP 123531 to 124131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:47,942 DEBUG Processing 538/741 atomic regions from SNP 161355 to 161955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,028 DEBUG Processing 486/727 atomic regions from SNP 145596 to 146196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,056 DEBUG Processing 413/698 atomic regions from SNP 123831 to 124431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,165 DEBUG Processing 539/741 atomic regions from SNP 161655 to 162255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,264 DEBUG Processing 487/727 atomic regions from SNP 145896 to 146496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,302 DEBUG Processing 414/698 atomic regions from SNP 124131 to 124731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,395 DEBUG Processing 540/741 atomic regions from SNP 161955 to 162555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,503 DEBUG Processing 488/727 atomic regions from SNP 146196 to 146796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,569 DEBUG Processing 415/698 atomic regions from SNP 124431 to 125031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,631 DEBUG Processing 541/741 atomic regions from SNP 162255 to 162855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,738 DEBUG Processing 489/727 atomic regions from SNP 146496 to 147096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:48,841 DEBUG Processing 416/698 atomic regions from SNP 124731 to 125331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:48,872 DEBUG Processing 542/741 atomic regions from SNP 162555 to 163155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:48,972 DEBUG Processing 490/727 atomic regions from SNP 146796 to 147396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,091 DEBUG Processing 417/698 atomic regions from SNP 125031 to 125631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,113 DEBUG Processing 543/741 atomic regions from SNP 162855 to 163455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,208 DEBUG Processing 491/727 atomic regions from SNP 147096 to 147696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,329 DEBUG Processing 418/698 atomic regions from SNP 125331 to 125931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,348 DEBUG Processing 544/741 atomic regions from SNP 163155 to 163755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,443 DEBUG Processing 492/727 atomic regions from SNP 147396 to 147996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,592 DEBUG Processing 545/741 atomic regions from SNP 163455 to 164055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,603 DEBUG Processing 419/698 atomic regions from SNP 125631 to 126231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,681 DEBUG Processing 493/727 atomic regions from SNP 147696 to 148296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:49,828 DEBUG Processing 546/741 atomic regions from SNP 163755 to 164355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:49,846 DEBUG Processing 420/698 atomic regions from SNP 125931 to 126531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:49,918 DEBUG Processing 494/727 atomic regions from SNP 147996 to 148596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,061 DEBUG Processing 547/741 atomic regions from SNP 164055 to 164655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,100 DEBUG Processing 421/698 atomic regions from SNP 126231 to 126831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,150 DEBUG Processing 495/727 atomic regions from SNP 148296 to 148896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,296 DEBUG Processing 548/741 atomic regions from SNP 164355 to 164955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,349 DEBUG Processing 422/698 atomic regions from SNP 126531 to 127131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,385 DEBUG Processing 496/727 atomic regions from SNP 148596 to 149196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,532 DEBUG Processing 549/741 atomic regions from SNP 164655 to 165255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,612 DEBUG Processing 423/698 atomic regions from SNP 126831 to 127431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,618 DEBUG Processing 497/727 atomic regions from SNP 148896 to 149496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,765 DEBUG Processing 550/741 atomic regions from SNP 164955 to 165555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:50,858 DEBUG Processing 498/727 atomic regions from SNP 149196 to 149796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:50,876 DEBUG Processing 424/698 atomic regions from SNP 127131 to 127731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:50,998 DEBUG Processing 551/741 atomic regions from SNP 165255 to 165855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,099 DEBUG Processing 499/727 atomic regions from SNP 149496 to 150096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,120 DEBUG Processing 425/698 atomic regions from SNP 127431 to 128031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,232 DEBUG Processing 552/741 atomic regions from SNP 165555 to 166155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,342 DEBUG Processing 500/727 atomic regions from SNP 149796 to 150396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,378 DEBUG Processing 426/698 atomic regions from SNP 127731 to 128331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,470 DEBUG Processing 553/741 atomic regions from SNP 165855 to 166455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,588 DEBUG Processing 501/727 atomic regions from SNP 150096 to 150696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,625 DEBUG Processing 427/698 atomic regions from SNP 128031 to 128631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,700 DEBUG Processing 554/741 atomic regions from SNP 166155 to 166755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:51,831 DEBUG Processing 502/727 atomic regions from SNP 150396 to 150996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:51,873 DEBUG Processing 428/698 atomic regions from SNP 128331 to 128931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:51,933 DEBUG Processing 555/741 atomic regions from SNP 166455 to 167055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,068 DEBUG Processing 503/727 atomic regions from SNP 150696 to 151296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,125 DEBUG Processing 429/698 atomic regions from SNP 128631 to 129231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,165 DEBUG Processing 556/741 atomic regions from SNP 166755 to 167355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,303 DEBUG Processing 504/727 atomic regions from SNP 150996 to 151596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,391 DEBUG Processing 430/698 atomic regions from SNP 128931 to 129531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,400 DEBUG Processing 557/741 atomic regions from SNP 167055 to 167655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,535 DEBUG Processing 505/727 atomic regions from SNP 151296 to 151896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,641 DEBUG Processing 431/698 atomic regions from SNP 129231 to 129831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,659 DEBUG Processing 558/741 atomic regions from SNP 167355 to 167955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,767 DEBUG Processing 506/727 atomic regions from SNP 151596 to 152196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:52,891 DEBUG Processing 559/741 atomic regions from SNP 167655 to 168255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:52,897 DEBUG Processing 432/698 atomic regions from SNP 129531 to 130131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:52,994 DEBUG Processing 507/727 atomic regions from SNP 151896 to 152496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,123 DEBUG Processing 560/741 atomic regions from SNP 167955 to 168555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,143 DEBUG Processing 433/698 atomic regions from SNP 129831 to 130431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,230 DEBUG Processing 508/727 atomic regions from SNP 152196 to 152796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,360 DEBUG Processing 561/741 atomic regions from SNP 168255 to 168855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,379 DEBUG Processing 434/698 atomic regions from SNP 130131 to 130731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,454 DEBUG Processing 509/727 atomic regions from SNP 152496 to 153096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,601 DEBUG Processing 562/741 atomic regions from SNP 168555 to 169155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,641 DEBUG Processing 435/698 atomic regions from SNP 130431 to 131031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,680 DEBUG Processing 510/727 atomic regions from SNP 152796 to 153396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:53,840 DEBUG Processing 563/741 atomic regions from SNP 168855 to 169455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:53,893 DEBUG Processing 436/698 atomic regions from SNP 130731 to 131331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:53,910 DEBUG Processing 511/727 atomic regions from SNP 153096 to 153696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,080 DEBUG Processing 564/741 atomic regions from SNP 169155 to 169755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,142 DEBUG Processing 512/727 atomic regions from SNP 153396 to 153996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,142 DEBUG Processing 437/698 atomic regions from SNP 131031 to 131631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,327 DEBUG Processing 565/741 atomic regions from SNP 169455 to 170055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,380 DEBUG Processing 513/727 atomic regions from SNP 153696 to 154296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,407 DEBUG Processing 438/698 atomic regions from SNP 131331 to 131931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,563 DEBUG Processing 566/741 atomic regions from SNP 169755 to 170355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,616 DEBUG Processing 514/727 atomic regions from SNP 153996 to 154596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,675 DEBUG Processing 439/698 atomic regions from SNP 131631 to 132231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:54,798 DEBUG Processing 567/741 atomic regions from SNP 170055 to 170655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:54,849 DEBUG Processing 515/727 atomic regions from SNP 154296 to 154896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:54,923 DEBUG Processing 440/698 atomic regions from SNP 131931 to 132531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,030 DEBUG Processing 568/741 atomic regions from SNP 170355 to 170955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,095 DEBUG Processing 516/727 atomic regions from SNP 154596 to 155196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,184 DEBUG Processing 441/698 atomic regions from SNP 132231 to 132831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,263 DEBUG Processing 569/741 atomic regions from SNP 170655 to 171255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,357 DEBUG Processing 517/727 atomic regions from SNP 154896 to 155496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,412 DEBUG Processing 442/698 atomic regions from SNP 132531 to 133131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,495 DEBUG Processing 570/741 atomic regions from SNP 170955 to 171555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,617 DEBUG Processing 518/727 atomic regions from SNP 155196 to 155796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,645 DEBUG Processing 443/698 atomic regions from SNP 132831 to 133431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,720 DEBUG Processing 571/741 atomic regions from SNP 171255 to 171855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:55,868 DEBUG Processing 519/727 atomic regions from SNP 155496 to 156096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:55,887 DEBUG Processing 444/698 atomic regions from SNP 133131 to 133731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:55,951 DEBUG Processing 572/741 atomic regions from SNP 171555 to 172155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,005 DEBUG Subchromosome time: 262.59531453694217, subchromosome SNPs: 254595 2025-01-31 09:51:56,006 DEBUG Estimated BADs: [1.74, 0.87, 3.48, 1.74, 6.97, 1.74, 0.44, 3.48, 1.74, 0.87, 1.74, 0.44, 5.22, 1.74, 0.35, 0.87, 5.22, 1.74, 0.58, 8.71, 3.48, 5.22, 1.74, 17.42, 3.48, 0.87, 3.48, 0.87, 3.48] SNP counts: [11558, 30686, 12997, 5392, 2086, 8062, 3897, 8947, 14436, 12146, 3168, 2429, 3284, 3291, 8685, 5803, 16521, 21797, 14708, 1806, 9967, 6736, 2434, 954, 8753, 7214, 3944, 17412, 5482] SNP IDs counts: [11558, 30686, 12997, 5392, 2086, 8062, 3897, 8947, 14436, 12146, 3168, 2429, 3284, 3291, 8685, 5803, 16521, 21797, 14708, 1806, 9967, 6736, 2434, 954, 8753, 7214, 3944, 17412, 5482] Critical gap: 667182bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 9.84Mbp, 28.26Mbp, 35.23Mbp, 38.29Mbp, 39.37Mbp, 44.08Mbp, 46.41Mbp, 51.50Mbp, 59.63Mbp, 67.00Mbp, 68.95Mbp, 70.71Mbp, 72.45Mbp, 74.30Mbp, 79.66Mbp, 83.00Mbp, 91.96Mbp, 103.94Mbp, 112.70Mbp, 113.65Mbp, 119.17Mbp, 122.90Mbp, 124.66Mbp, 125.17Mbp, 129.95Mbp, 134.77Mbp, 136.86Mbp, 146.58Mbp, 149.74Mbp] 2025-01-31 09:51:56,006 DEBUG chr6 time: 262.5959336369997 s 2025-01-31 09:51:56,127 DEBUG Processing 520/727 atomic regions from SNP 155796 to 156396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,138 DEBUG Processing 445/698 atomic regions from SNP 133431 to 134031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,175 DEBUG chr6: Fitting background model for 29 segments 2025-01-31 09:51:56,198 DEBUG Processing 573/741 atomic regions from SNP 171855 to 172455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,378 DEBUG Processing 446/698 atomic regions from SNP 133731 to 134331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,393 DEBUG Processing 521/727 atomic regions from SNP 156096 to 156696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,438 DEBUG Processing 574/741 atomic regions from SNP 172155 to 172755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,618 DEBUG Processing 447/698 atomic regions from SNP 134031 to 134631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,665 DEBUG Processing 522/727 atomic regions from SNP 156396 to 156996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:56,681 DEBUG Processing 575/741 atomic regions from SNP 172455 to 173055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,861 DEBUG Processing 448/698 atomic regions from SNP 134331 to 134931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:56,926 DEBUG Processing 576/741 atomic regions from SNP 172755 to 173355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:56,933 DEBUG Processing 523/727 atomic regions from SNP 156696 to 157296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,101 DEBUG Processing 449/698 atomic regions from SNP 134631 to 135231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,164 DEBUG Processing 577/741 atomic regions from SNP 173055 to 173655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,186 DEBUG Processing 524/727 atomic regions from SNP 156996 to 157596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,337 DEBUG Processing 450/698 atomic regions from SNP 134931 to 135531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,400 DEBUG Processing 578/741 atomic regions from SNP 173355 to 173955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,446 DEBUG Processing 525/727 atomic regions from SNP 157296 to 157896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,571 DEBUG Processing 451/698 atomic regions from SNP 135231 to 135831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,632 DEBUG Processing 579/741 atomic regions from SNP 173655 to 174255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,681 DEBUG Processing 526/727 atomic regions from SNP 157596 to 158196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:57,805 DEBUG Processing 452/698 atomic regions from SNP 135531 to 136131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:57,862 DEBUG Processing 580/741 atomic regions from SNP 173955 to 174555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:57,933 DEBUG Processing 527/727 atomic regions from SNP 157896 to 158496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,046 DEBUG Processing 453/698 atomic regions from SNP 135831 to 136431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,095 DEBUG Processing 581/741 atomic regions from SNP 174255 to 174855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,190 DEBUG Processing 528/727 atomic regions from SNP 158196 to 158796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,291 DEBUG Processing 454/698 atomic regions from SNP 136131 to 136731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,338 DEBUG Processing 582/741 atomic regions from SNP 174555 to 175155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,433 DEBUG Processing 529/727 atomic regions from SNP 158496 to 159096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,544 DEBUG Processing 455/698 atomic regions from SNP 136431 to 137031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,588 DEBUG Processing 583/741 atomic regions from SNP 174855 to 175455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,680 DEBUG Processing 530/727 atomic regions from SNP 158796 to 159396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:58,791 DEBUG Processing 456/698 atomic regions from SNP 136731 to 137331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:58,832 DEBUG Processing 584/741 atomic regions from SNP 175155 to 175755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:58,925 DEBUG Processing 531/727 atomic regions from SNP 159096 to 159696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,038 DEBUG Processing 457/698 atomic regions from SNP 137031 to 137631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,072 DEBUG Processing 585/741 atomic regions from SNP 175455 to 176055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,172 DEBUG Processing 532/727 atomic regions from SNP 159396 to 159996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,283 DEBUG Processing 458/698 atomic regions from SNP 137331 to 137931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,306 DEBUG Processing 586/741 atomic regions from SNP 175755 to 176355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,412 DEBUG Processing 533/727 atomic regions from SNP 159696 to 160296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,543 DEBUG Processing 587/741 atomic regions from SNP 176055 to 176655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,546 DEBUG Processing 459/698 atomic regions from SNP 137631 to 138231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,605 DEBUG chr14:0-124902244: Signal thresholds approximated 2025-01-31 09:51:59,606 DEBUG chr14: Signal quantile: 0.994. signal threshold: 14. Best RMSEA: 0.019 2025-01-31 09:51:59,655 DEBUG Processing 534/727 atomic regions from SNP 159996 to 160596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:51:59,790 DEBUG Processing 588/741 atomic regions from SNP 176355 to 176955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:51:59,801 DEBUG Processing 460/698 atomic regions from SNP 137931 to 138531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:51:59,898 DEBUG Processing 535/727 atomic regions from SNP 160296 to 160896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,038 DEBUG Processing 589/741 atomic regions from SNP 176655 to 177255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,050 DEBUG Processing 461/698 atomic regions from SNP 138231 to 138831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,143 DEBUG Processing 536/727 atomic regions from SNP 160596 to 161196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,288 DEBUG Processing 590/741 atomic regions from SNP 176955 to 177555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,299 DEBUG Processing 462/698 atomic regions from SNP 138531 to 139131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,379 DEBUG Processing 537/727 atomic regions from SNP 160896 to 161496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,537 DEBUG Processing 591/741 atomic regions from SNP 177255 to 177855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,552 DEBUG Processing 463/698 atomic regions from SNP 138831 to 139431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,620 DEBUG Processing 538/727 atomic regions from SNP 161196 to 161796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:00,786 DEBUG Processing 592/741 atomic regions from SNP 177555 to 178155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:00,803 DEBUG Processing 464/698 atomic regions from SNP 139131 to 139731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:00,864 DEBUG Processing 539/727 atomic regions from SNP 161496 to 162096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,052 DEBUG Processing 593/741 atomic regions from SNP 177855 to 178455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,056 DEBUG Processing 465/698 atomic regions from SNP 139431 to 140031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,120 DEBUG Processing 540/727 atomic regions from SNP 161796 to 162396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,301 DEBUG Processing 594/741 atomic regions from SNP 178155 to 178755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,310 DEBUG Processing 466/698 atomic regions from SNP 139731 to 140331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,366 DEBUG Processing 541/727 atomic regions from SNP 162096 to 162696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,549 DEBUG Processing 595/741 atomic regions from SNP 178455 to 179055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,559 DEBUG Processing 467/698 atomic regions from SNP 140031 to 140631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,612 DEBUG Processing 542/727 atomic regions from SNP 162396 to 162996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:01,791 DEBUG Processing 596/741 atomic regions from SNP 178755 to 179355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:01,806 DEBUG Processing 468/698 atomic regions from SNP 140331 to 140931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:01,859 DEBUG Processing 543/727 atomic regions from SNP 162696 to 163296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,013 DEBUG chr14 total SNP count: 197775 2025-01-31 09:52:02,014 DEBUG chr14 length: 124902244 2025-01-31 09:52:02,014 DEBUG ----------------------------------------- 2025-01-31 09:52:02,014 INFO Processing SNPs in chr14 2025-01-31 09:52:02,036 DEBUG Processing 597/741 atomic regions from SNP 179055 to 179655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,055 DEBUG Processing 469/698 atomic regions from SNP 140631 to 141231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,108 DEBUG Processing 544/727 atomic regions from SNP 162996 to 163596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,278 DEBUG Processing 598/741 atomic regions from SNP 179355 to 179955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,303 DEBUG Processing 470/698 atomic regions from SNP 140931 to 141531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,348 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 153), (153, 197775)] 2025-01-31 09:52:02,359 DEBUG Processing 545/727 atomic regions from SNP 163296 to 163896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,439 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:02,459 DEBUG Segmenting atomic regions: 2025-01-31 09:52:02,514 DEBUG Processing 599/741 atomic regions from SNP 179655 to 180255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,543 DEBUG Processing 471/698 atomic regions from SNP 141231 to 141831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,553 DEBUG Processing 1/1 atomic regions from SNP 0 to 152 for chr14 (subchromosome 1 of 2). 2025-01-31 09:52:02,560 DEBUG Unique SNPs positions in subchromosome 1: 153 2025-01-31 09:52:02,561 DEBUG Subchromosome time: 0.12189600896090269, subchromosome SNPs: 153 2025-01-31 09:52:02,606 DEBUG Processing 546/727 atomic regions from SNP 163596 to 164196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,612 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:02,747 DEBUG Processing 600/741 atomic regions from SNP 179955 to 180555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:02,778 DEBUG Processing 472/698 atomic regions from SNP 141531 to 142131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:02,845 DEBUG Processing 547/727 atomic regions from SNP 163896 to 164496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:02,983 DEBUG Processing 601/741 atomic regions from SNP 180255 to 180855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,016 DEBUG Processing 473/698 atomic regions from SNP 141831 to 142431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,088 DEBUG Processing 548/727 atomic regions from SNP 164196 to 164796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,218 DEBUG Processing 602/741 atomic regions from SNP 180555 to 181155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,250 DEBUG Processing 474/698 atomic regions from SNP 142131 to 142731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,328 DEBUG Processing 549/727 atomic regions from SNP 164496 to 165096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,452 DEBUG Processing 603/741 atomic regions from SNP 180855 to 181455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,487 DEBUG Processing 475/698 atomic regions from SNP 142431 to 143031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,572 DEBUG Processing 550/727 atomic regions from SNP 164796 to 165396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,700 DEBUG Processing 604/741 atomic regions from SNP 181155 to 181755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:03,763 DEBUG Processing 476/698 atomic regions from SNP 142731 to 143331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:03,823 DEBUG Processing 551/727 atomic regions from SNP 165096 to 165696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:03,943 DEBUG Processing 605/741 atomic regions from SNP 181455 to 182055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,012 DEBUG Processing 477/698 atomic regions from SNP 143031 to 143631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,070 DEBUG Processing 552/727 atomic regions from SNP 165396 to 165996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,184 DEBUG Processing 606/741 atomic regions from SNP 181755 to 182355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,253 DEBUG Processing 478/698 atomic regions from SNP 143331 to 143931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,314 DEBUG Processing 553/727 atomic regions from SNP 165696 to 166296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,421 DEBUG Processing 607/741 atomic regions from SNP 182055 to 182655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,497 DEBUG Processing 479/698 atomic regions from SNP 143631 to 144231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,558 DEBUG Processing 554/727 atomic regions from SNP 165996 to 166596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,664 DEBUG Processing 608/741 atomic regions from SNP 182355 to 182955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:04,758 DEBUG Processing 480/698 atomic regions from SNP 143931 to 144531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:04,796 DEBUG Processing 555/727 atomic regions from SNP 166296 to 166896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:04,906 DEBUG Processing 609/741 atomic regions from SNP 182655 to 183255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,012 DEBUG Processing 481/698 atomic regions from SNP 144231 to 144831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,032 DEBUG Processing 556/727 atomic regions from SNP 166596 to 167196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,152 DEBUG Processing 610/741 atomic regions from SNP 182955 to 183555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,265 DEBUG Processing 557/727 atomic regions from SNP 166896 to 167496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,275 DEBUG Processing 482/698 atomic regions from SNP 144531 to 145131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,407 DEBUG Processing 611/741 atomic regions from SNP 183255 to 183855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,508 DEBUG Processing 558/727 atomic regions from SNP 167196 to 167796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,531 DEBUG Processing 483/698 atomic regions from SNP 144831 to 145431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,659 DEBUG Processing 612/741 atomic regions from SNP 183555 to 184155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,747 DEBUG Processing 559/727 atomic regions from SNP 167496 to 168096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:05,768 DEBUG Processing 484/698 atomic regions from SNP 145131 to 145731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:05,918 DEBUG Processing 613/741 atomic regions from SNP 183855 to 184455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:05,995 DEBUG Processing 560/727 atomic regions from SNP 167796 to 168396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,017 DEBUG Processing 485/698 atomic regions from SNP 145431 to 146031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,174 DEBUG Processing 614/741 atomic regions from SNP 184155 to 184755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,250 DEBUG Processing 561/727 atomic regions from SNP 168096 to 168696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,290 DEBUG Processing 486/698 atomic regions from SNP 145731 to 146331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,406 DEBUG Processing 615/741 atomic regions from SNP 184455 to 185055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,484 DEBUG Processing 562/727 atomic regions from SNP 168396 to 168996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,548 DEBUG Processing 487/698 atomic regions from SNP 146031 to 146631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,649 DEBUG Processing 616/741 atomic regions from SNP 184755 to 185355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,723 DEBUG Processing 563/727 atomic regions from SNP 168696 to 169296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:06,816 DEBUG Processing 488/698 atomic regions from SNP 146331 to 146931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:06,885 DEBUG Processing 617/741 atomic regions from SNP 185055 to 185655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:06,952 DEBUG Processing 564/727 atomic regions from SNP 168996 to 169596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,081 DEBUG Processing 489/698 atomic regions from SNP 146631 to 147231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,121 DEBUG Processing 618/741 atomic regions from SNP 185355 to 185955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,174 DEBUG Processing 565/727 atomic regions from SNP 169296 to 169896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,327 DEBUG Processing 490/698 atomic regions from SNP 146931 to 147531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,364 DEBUG Processing 619/741 atomic regions from SNP 185655 to 186255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,406 DEBUG Processing 566/727 atomic regions from SNP 169596 to 170196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,579 DEBUG Processing 491/698 atomic regions from SNP 147231 to 147831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,611 DEBUG Processing 620/741 atomic regions from SNP 185955 to 186555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,642 DEBUG Processing 567/727 atomic regions from SNP 169896 to 170496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:07,825 DEBUG Processing 492/698 atomic regions from SNP 147531 to 148131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:07,852 DEBUG Processing 621/741 atomic regions from SNP 186255 to 186855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:07,876 DEBUG Processing 568/727 atomic regions from SNP 170196 to 170796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,068 DEBUG Processing 493/698 atomic regions from SNP 147831 to 148431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,094 DEBUG Processing 622/741 atomic regions from SNP 186555 to 187155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,116 DEBUG Processing 569/727 atomic regions from SNP 170496 to 171096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,322 DEBUG Processing 494/698 atomic regions from SNP 148131 to 148731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,332 DEBUG Processing 623/741 atomic regions from SNP 186855 to 187455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,355 DEBUG Processing 570/727 atomic regions from SNP 170796 to 171396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,572 DEBUG Processing 495/698 atomic regions from SNP 148431 to 149031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,578 DEBUG Processing 624/741 atomic regions from SNP 187155 to 187755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,601 DEBUG Processing 571/727 atomic regions from SNP 171096 to 171696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:08,809 DEBUG Processing 496/698 atomic regions from SNP 148731 to 149331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:08,817 DEBUG Processing 625/741 atomic regions from SNP 187455 to 188055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:08,855 DEBUG Processing 572/727 atomic regions from SNP 171396 to 171996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,050 DEBUG Processing 497/698 atomic regions from SNP 149031 to 149631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,061 DEBUG Processing 626/741 atomic regions from SNP 187755 to 188355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,100 DEBUG Processing 573/727 atomic regions from SNP 171696 to 172296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,290 DEBUG Processing 498/698 atomic regions from SNP 149331 to 149931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,306 DEBUG Processing 627/741 atomic regions from SNP 188055 to 188655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,343 DEBUG Processing 574/727 atomic regions from SNP 171996 to 172596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,533 DEBUG Processing 499/698 atomic regions from SNP 149631 to 150231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,551 DEBUG Processing 628/741 atomic regions from SNP 188355 to 188955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,555 DEBUG chr9: Estimating proportion of background vs signal 2025-01-31 09:52:09,584 DEBUG Processing 575/727 atomic regions from SNP 172296 to 172896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:09,785 DEBUG Processing 500/698 atomic regions from SNP 149931 to 150531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:09,804 DEBUG Processing 629/741 atomic regions from SNP 188655 to 189255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:09,839 DEBUG Processing 576/727 atomic regions from SNP 172596 to 173196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,032 DEBUG Processing 501/698 atomic regions from SNP 150231 to 150831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,052 DEBUG Processing 630/741 atomic regions from SNP 188955 to 189555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,102 DEBUG Processing 577/727 atomic regions from SNP 172896 to 173496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,275 DEBUG Processing 502/698 atomic regions from SNP 150531 to 151131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,295 DEBUG Processing 631/741 atomic regions from SNP 189255 to 189855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,363 DEBUG Processing 578/727 atomic regions from SNP 173196 to 173796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,522 DEBUG Processing 503/698 atomic regions from SNP 150831 to 151431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,546 DEBUG Processing 632/741 atomic regions from SNP 189555 to 190155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,609 DEBUG Processing 579/727 atomic regions from SNP 173496 to 174096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:10,768 DEBUG Processing 504/698 atomic regions from SNP 151131 to 151731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:10,791 DEBUG Processing 633/741 atomic regions from SNP 189855 to 190455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:10,854 DEBUG Processing 580/727 atomic regions from SNP 173796 to 174396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,018 DEBUG Processing 505/698 atomic regions from SNP 151431 to 152031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,040 DEBUG Processing 634/741 atomic regions from SNP 190155 to 190755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,126 DEBUG Processing 581/727 atomic regions from SNP 174096 to 174696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,253 DEBUG Processing 506/698 atomic regions from SNP 151731 to 152331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,277 DEBUG Processing 635/741 atomic regions from SNP 190455 to 191055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,398 DEBUG Processing 582/727 atomic regions from SNP 174396 to 174996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,492 DEBUG Processing 507/698 atomic regions from SNP 152031 to 152631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,515 DEBUG Processing 636/741 atomic regions from SNP 190755 to 191355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,679 DEBUG Processing 583/727 atomic regions from SNP 174696 to 175296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,736 DEBUG Processing 508/698 atomic regions from SNP 152331 to 152931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:11,758 DEBUG Processing 637/741 atomic regions from SNP 191055 to 191655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:11,953 DEBUG Processing 584/727 atomic regions from SNP 174996 to 175596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:11,980 DEBUG Processing 509/698 atomic regions from SNP 152631 to 153231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,002 DEBUG Processing 638/741 atomic regions from SNP 191355 to 191955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,225 DEBUG Processing 585/727 atomic regions from SNP 175296 to 175896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,228 DEBUG Processing 510/698 atomic regions from SNP 152931 to 153531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,246 DEBUG Processing 639/741 atomic regions from SNP 191655 to 192255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,473 DEBUG Processing 511/698 atomic regions from SNP 153231 to 153831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,491 DEBUG Processing 640/741 atomic regions from SNP 191955 to 192555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,496 DEBUG Processing 586/727 atomic regions from SNP 175596 to 176196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,720 DEBUG Processing 512/698 atomic regions from SNP 153531 to 154131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,736 DEBUG Processing 641/741 atomic regions from SNP 192255 to 192855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:12,773 DEBUG Processing 587/727 atomic regions from SNP 175896 to 176496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:12,964 DEBUG Processing 513/698 atomic regions from SNP 153831 to 154431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:12,978 DEBUG Processing 642/741 atomic regions from SNP 192555 to 193155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,019 DEBUG Processing 588/727 atomic regions from SNP 176196 to 176796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,209 DEBUG Processing 514/698 atomic regions from SNP 154131 to 154731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,222 DEBUG Processing 643/741 atomic regions from SNP 192855 to 193455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,269 DEBUG Processing 589/727 atomic regions from SNP 176496 to 177096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,449 DEBUG Processing 515/698 atomic regions from SNP 154431 to 155031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,463 DEBUG Processing 644/741 atomic regions from SNP 193155 to 193755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,515 DEBUG Processing 590/727 atomic regions from SNP 176796 to 177396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,694 DEBUG Processing 516/698 atomic regions from SNP 154731 to 155331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,705 DEBUG Processing 645/741 atomic regions from SNP 193455 to 194055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:13,758 DEBUG Processing 591/727 atomic regions from SNP 177096 to 177696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:13,934 DEBUG Processing 517/698 atomic regions from SNP 155031 to 155631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:13,944 DEBUG Processing 646/741 atomic regions from SNP 193755 to 194355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,023 DEBUG Processing 592/727 atomic regions from SNP 177396 to 177996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,173 DEBUG Processing 518/698 atomic regions from SNP 155331 to 155931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,182 DEBUG Processing 647/741 atomic regions from SNP 194055 to 194655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,283 DEBUG Processing 593/727 atomic regions from SNP 177696 to 178296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,431 DEBUG Processing 648/741 atomic regions from SNP 194355 to 194955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,446 DEBUG Processing 519/698 atomic regions from SNP 155631 to 156231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,546 DEBUG Processing 594/727 atomic regions from SNP 177996 to 178596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,666 DEBUG Processing 649/741 atomic regions from SNP 194655 to 195255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,702 DEBUG Processing 520/698 atomic regions from SNP 155931 to 156531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:14,807 DEBUG Processing 595/727 atomic regions from SNP 178296 to 178896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:14,902 DEBUG Processing 650/741 atomic regions from SNP 194955 to 195555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:14,954 DEBUG Processing 521/698 atomic regions from SNP 156231 to 156831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,048 DEBUG Processing 596/727 atomic regions from SNP 178596 to 179196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,139 DEBUG Processing 651/741 atomic regions from SNP 195255 to 195855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,190 DEBUG Processing 522/698 atomic regions from SNP 156531 to 157131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,285 DEBUG Processing 597/727 atomic regions from SNP 178896 to 179496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,404 DEBUG Processing 652/741 atomic regions from SNP 195555 to 196155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,429 DEBUG Processing 523/698 atomic regions from SNP 156831 to 157431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,526 DEBUG Processing 598/727 atomic regions from SNP 179196 to 179796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,642 DEBUG Processing 653/741 atomic regions from SNP 195855 to 196455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,665 DEBUG Processing 524/698 atomic regions from SNP 157131 to 157731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:15,765 DEBUG Processing 599/727 atomic regions from SNP 179496 to 180096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:15,876 DEBUG Processing 654/741 atomic regions from SNP 196155 to 196755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:15,903 DEBUG Processing 525/698 atomic regions from SNP 157431 to 158031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,006 DEBUG Processing 600/727 atomic regions from SNP 179796 to 180396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,115 DEBUG Processing 655/741 atomic regions from SNP 196455 to 197055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,139 DEBUG Processing 526/698 atomic regions from SNP 157731 to 158331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,244 DEBUG Processing 601/727 atomic regions from SNP 180096 to 180696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,350 DEBUG Processing 656/741 atomic regions from SNP 196755 to 197355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,382 DEBUG Processing 527/698 atomic regions from SNP 158031 to 158631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,484 DEBUG Processing 602/727 atomic regions from SNP 180396 to 180996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,593 DEBUG Processing 657/741 atomic regions from SNP 197055 to 197655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,624 DEBUG Processing 528/698 atomic regions from SNP 158331 to 158931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,723 DEBUG Processing 603/727 atomic regions from SNP 180696 to 181296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:16,833 DEBUG Processing 658/741 atomic regions from SNP 197355 to 197955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:16,862 DEBUG Processing 529/698 atomic regions from SNP 158631 to 159231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:16,960 DEBUG Processing 604/727 atomic regions from SNP 180996 to 181596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,077 DEBUG Processing 659/741 atomic regions from SNP 197655 to 198255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,105 DEBUG Processing 530/698 atomic regions from SNP 158931 to 159531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,198 DEBUG Processing 605/727 atomic regions from SNP 181296 to 181896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,319 DEBUG Processing 660/741 atomic regions from SNP 197955 to 198555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,348 DEBUG Processing 531/698 atomic regions from SNP 159231 to 159831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,435 DEBUG Processing 606/727 atomic regions from SNP 181596 to 182196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,561 DEBUG Processing 661/741 atomic regions from SNP 198255 to 198855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,591 DEBUG Processing 532/698 atomic regions from SNP 159531 to 160131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,677 DEBUG Processing 607/727 atomic regions from SNP 181896 to 182496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:17,810 DEBUG Processing 662/741 atomic regions from SNP 198555 to 199155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:17,831 DEBUG Processing 533/698 atomic regions from SNP 159831 to 160431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:17,924 DEBUG Processing 608/727 atomic regions from SNP 182196 to 182796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,070 DEBUG Processing 663/741 atomic regions from SNP 198855 to 199455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,072 DEBUG Processing 534/698 atomic regions from SNP 160131 to 160731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,206 DEBUG Processing 609/727 atomic regions from SNP 182496 to 183096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,312 DEBUG Processing 664/741 atomic regions from SNP 199155 to 199755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,314 DEBUG Processing 535/698 atomic regions from SNP 160431 to 161031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,450 DEBUG Processing 610/727 atomic regions from SNP 182796 to 183396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,557 DEBUG Processing 665/741 atomic regions from SNP 199455 to 200055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,576 DEBUG Processing 536/698 atomic regions from SNP 160731 to 161331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,694 DEBUG Processing 611/727 atomic regions from SNP 183096 to 183696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:18,815 DEBUG Processing 666/741 atomic regions from SNP 199755 to 200355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:18,818 DEBUG Processing 537/698 atomic regions from SNP 161031 to 161631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:18,939 DEBUG Processing 612/727 atomic regions from SNP 183396 to 183996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,061 DEBUG Processing 538/698 atomic regions from SNP 161331 to 161931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,083 DEBUG Processing 667/741 atomic regions from SNP 200055 to 200655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,182 DEBUG Processing 613/727 atomic regions from SNP 183696 to 184296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,305 DEBUG Processing 539/698 atomic regions from SNP 161631 to 162231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,328 DEBUG Processing 668/741 atomic regions from SNP 200355 to 200955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,426 DEBUG Processing 614/727 atomic regions from SNP 183996 to 184596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,546 DEBUG Processing 540/698 atomic regions from SNP 161931 to 162531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,568 DEBUG Processing 669/741 atomic regions from SNP 200655 to 201255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,681 DEBUG Processing 615/727 atomic regions from SNP 184296 to 184896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:19,791 DEBUG Processing 541/698 atomic regions from SNP 162231 to 162831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:19,811 DEBUG Processing 670/741 atomic regions from SNP 200955 to 201555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:19,942 DEBUG Processing 616/727 atomic regions from SNP 184596 to 185196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,031 DEBUG Processing 542/698 atomic regions from SNP 162531 to 163131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,053 DEBUG Processing 671/741 atomic regions from SNP 201255 to 201855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,214 DEBUG Processing 617/727 atomic regions from SNP 184896 to 185496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,273 DEBUG Processing 543/698 atomic regions from SNP 162831 to 163431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,297 DEBUG Processing 672/741 atomic regions from SNP 201555 to 202155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,476 DEBUG Processing 618/727 atomic regions from SNP 185196 to 185796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,525 DEBUG Processing 544/698 atomic regions from SNP 163131 to 163731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,545 DEBUG Processing 673/741 atomic regions from SNP 201855 to 202455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:20,758 DEBUG Processing 619/727 atomic regions from SNP 185496 to 186096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:20,777 DEBUG Processing 545/698 atomic regions from SNP 163431 to 164031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:20,814 DEBUG Processing 674/741 atomic regions from SNP 202155 to 202755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,028 DEBUG Processing 546/698 atomic regions from SNP 163731 to 164331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,029 DEBUG Processing 620/727 atomic regions from SNP 185796 to 186396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,089 DEBUG Processing 675/741 atomic regions from SNP 202455 to 203055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,272 DEBUG Processing 547/698 atomic regions from SNP 164031 to 164631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,302 DEBUG Processing 621/727 atomic regions from SNP 186096 to 186696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,350 DEBUG Processing 676/741 atomic regions from SNP 202755 to 203355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,541 DEBUG Processing 548/698 atomic regions from SNP 164331 to 164931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,571 DEBUG Processing 622/727 atomic regions from SNP 186396 to 186996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:21,595 DEBUG Processing 677/741 atomic regions from SNP 203055 to 203655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,816 DEBUG Processing 549/698 atomic regions from SNP 164631 to 165231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:21,840 DEBUG Processing 678/741 atomic regions from SNP 203355 to 203955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:21,850 DEBUG Processing 623/727 atomic regions from SNP 186696 to 187296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,067 DEBUG Processing 550/698 atomic regions from SNP 164931 to 165531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,086 DEBUG Processing 679/741 atomic regions from SNP 203655 to 204255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,104 DEBUG Processing 624/727 atomic regions from SNP 186996 to 187596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,307 DEBUG Processing 551/698 atomic regions from SNP 165231 to 165831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,330 DEBUG Processing 680/741 atomic regions from SNP 203955 to 204555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,348 DEBUG Processing 625/727 atomic regions from SNP 187296 to 187896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,556 DEBUG Processing 552/698 atomic regions from SNP 165531 to 166131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,586 DEBUG Processing 681/741 atomic regions from SNP 204255 to 204855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,595 DEBUG Processing 626/727 atomic regions from SNP 187596 to 188196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:22,797 DEBUG Processing 553/698 atomic regions from SNP 165831 to 166431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:22,829 DEBUG Processing 682/741 atomic regions from SNP 204555 to 205155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:22,839 DEBUG Processing 627/727 atomic regions from SNP 187896 to 188496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,040 DEBUG Processing 554/698 atomic regions from SNP 166131 to 166731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,069 DEBUG Processing 683/741 atomic regions from SNP 204855 to 205455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,096 DEBUG Processing 628/727 atomic regions from SNP 188196 to 188796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,285 DEBUG Processing 555/698 atomic regions from SNP 166431 to 167031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,314 DEBUG Processing 684/741 atomic regions from SNP 205155 to 205755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,341 DEBUG Processing 629/727 atomic regions from SNP 188496 to 189096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,545 DEBUG Processing 556/698 atomic regions from SNP 166731 to 167331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,560 DEBUG Processing 685/741 atomic regions from SNP 205455 to 206055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,584 DEBUG Processing 630/727 atomic regions from SNP 188796 to 189396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:23,797 DEBUG Processing 557/698 atomic regions from SNP 167031 to 167631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:23,813 DEBUG Processing 686/741 atomic regions from SNP 205755 to 206355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:23,834 DEBUG Processing 631/727 atomic regions from SNP 189096 to 189696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,049 DEBUG Processing 558/698 atomic regions from SNP 167331 to 167931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,065 DEBUG Processing 687/741 atomic regions from SNP 206055 to 206655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,083 DEBUG Processing 632/727 atomic regions from SNP 189396 to 189996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,301 DEBUG Processing 559/698 atomic regions from SNP 167631 to 168231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,319 DEBUG Processing 688/741 atomic regions from SNP 206355 to 206955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,335 DEBUG Processing 633/727 atomic regions from SNP 189696 to 190296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,549 DEBUG Processing 560/698 atomic regions from SNP 167931 to 168531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,569 DEBUG Processing 689/741 atomic regions from SNP 206655 to 207255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,581 DEBUG Processing 634/727 atomic regions from SNP 189996 to 190596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:24,796 DEBUG Processing 561/698 atomic regions from SNP 168231 to 168831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:24,817 DEBUG Processing 690/741 atomic regions from SNP 206955 to 207555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:24,838 DEBUG Processing 635/727 atomic regions from SNP 190296 to 190896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,042 DEBUG Processing 562/698 atomic regions from SNP 168531 to 169131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,066 DEBUG Processing 691/741 atomic regions from SNP 207255 to 207855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,084 DEBUG Processing 636/727 atomic regions from SNP 190596 to 191196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,286 DEBUG Processing 563/698 atomic regions from SNP 168831 to 169431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,312 DEBUG Processing 692/741 atomic regions from SNP 207555 to 208155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,329 DEBUG Processing 637/727 atomic regions from SNP 190896 to 191496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,557 DEBUG Processing 693/741 atomic regions from SNP 207855 to 208455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,565 DEBUG Processing 564/698 atomic regions from SNP 169131 to 169731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,585 DEBUG Processing 638/727 atomic regions from SNP 191196 to 191796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:25,798 DEBUG Processing 694/741 atomic regions from SNP 208155 to 208755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:25,824 DEBUG Processing 565/698 atomic regions from SNP 169431 to 170031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:25,830 DEBUG Processing 639/727 atomic regions from SNP 191496 to 192096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,045 DEBUG Processing 695/741 atomic regions from SNP 208455 to 209055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,076 DEBUG Processing 640/727 atomic regions from SNP 191796 to 192396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,077 DEBUG Processing 566/698 atomic regions from SNP 169731 to 170331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,303 DEBUG Processing 696/741 atomic regions from SNP 208755 to 209355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,335 DEBUG Processing 567/698 atomic regions from SNP 170031 to 170631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,337 DEBUG Processing 641/727 atomic regions from SNP 192096 to 192696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,565 DEBUG Processing 697/741 atomic regions from SNP 209055 to 209655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,583 DEBUG Processing 642/727 atomic regions from SNP 192396 to 192996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,586 DEBUG Processing 568/698 atomic regions from SNP 170331 to 170931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:26,807 DEBUG Processing 698/741 atomic regions from SNP 209355 to 209955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:26,822 DEBUG Processing 643/727 atomic regions from SNP 192696 to 193296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:26,828 DEBUG Processing 569/698 atomic regions from SNP 170631 to 171231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,051 DEBUG Processing 699/741 atomic regions from SNP 209655 to 210255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,055 DEBUG Processing 644/727 atomic regions from SNP 192996 to 193596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,069 DEBUG Processing 570/698 atomic regions from SNP 170931 to 171531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,287 DEBUG Processing 645/727 atomic regions from SNP 193296 to 193896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,306 DEBUG Processing 700/741 atomic regions from SNP 209955 to 210555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,307 DEBUG Processing 571/698 atomic regions from SNP 171231 to 171831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,523 DEBUG Processing 646/727 atomic regions from SNP 193596 to 194196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,544 DEBUG Processing 701/741 atomic regions from SNP 210255 to 210855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,547 DEBUG Processing 572/698 atomic regions from SNP 171531 to 172131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,557 DEBUG Segmenting atomic regions: 2025-01-31 09:52:27,651 DEBUG Processing 1/657 atomic regions from SNP 0 to 601 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:27,759 DEBUG Processing 647/727 atomic regions from SNP 193896 to 194496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:27,786 DEBUG Processing 702/741 atomic regions from SNP 210555 to 211155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:27,789 DEBUG Processing 573/698 atomic regions from SNP 171831 to 172431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:27,873 DEBUG Processing 2/657 atomic regions from SNP 301 to 902 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,001 DEBUG Processing 648/727 atomic regions from SNP 194196 to 194796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,027 DEBUG Processing 703/741 atomic regions from SNP 210855 to 211455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,030 DEBUG Processing 574/698 atomic regions from SNP 172131 to 172731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,098 DEBUG Processing 3/657 atomic regions from SNP 602 to 1203 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,243 DEBUG Processing 649/727 atomic regions from SNP 194496 to 195096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,271 DEBUG Processing 704/741 atomic regions from SNP 211155 to 211755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,288 DEBUG Processing 575/698 atomic regions from SNP 172431 to 173031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,322 DEBUG Processing 4/657 atomic regions from SNP 903 to 1504 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,483 DEBUG Processing 650/727 atomic regions from SNP 194796 to 195396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,512 DEBUG Processing 705/741 atomic regions from SNP 211455 to 212055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,534 DEBUG Processing 576/698 atomic regions from SNP 172731 to 173331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,569 DEBUG Processing 5/657 atomic regions from SNP 1204 to 1805 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,726 DEBUG Processing 651/727 atomic regions from SNP 195096 to 195696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:28,752 DEBUG Processing 706/741 atomic regions from SNP 211755 to 212355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,795 DEBUG Processing 6/657 atomic regions from SNP 1505 to 2106 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:28,800 DEBUG Processing 577/698 atomic regions from SNP 173031 to 173631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:28,826 DEBUG chr9:0-124595110: Signal thresholds approximated 2025-01-31 09:52:28,828 DEBUG chr9: Signal quantile: 0.989. signal threshold: 13. Best RMSEA: 0.013 2025-01-31 09:52:28,991 DEBUG Processing 707/741 atomic regions from SNP 212055 to 212655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:28,999 DEBUG Processing 652/727 atomic regions from SNP 195396 to 195996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,020 DEBUG Processing 7/657 atomic regions from SNP 1806 to 2407 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,056 DEBUG Processing 578/698 atomic regions from SNP 173331 to 173931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,235 DEBUG Processing 708/741 atomic regions from SNP 212355 to 212955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,246 DEBUG Processing 8/657 atomic regions from SNP 2107 to 2708 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,268 DEBUG Processing 653/727 atomic regions from SNP 195696 to 196296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,307 DEBUG Processing 579/698 atomic regions from SNP 173631 to 174231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,470 DEBUG Processing 9/657 atomic regions from SNP 2408 to 3009 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,478 DEBUG Processing 709/741 atomic regions from SNP 212655 to 213255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,544 DEBUG Processing 654/727 atomic regions from SNP 195996 to 196596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,567 DEBUG Processing 580/698 atomic regions from SNP 173931 to 174531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,691 DEBUG Processing 10/657 atomic regions from SNP 2709 to 3310 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,721 DEBUG Processing 710/741 atomic regions from SNP 212955 to 213555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:29,817 DEBUG Processing 655/727 atomic regions from SNP 196296 to 196896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:29,826 DEBUG Processing 581/698 atomic regions from SNP 174231 to 174831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:29,919 DEBUG Processing 11/657 atomic regions from SNP 3010 to 3611 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:29,974 DEBUG Processing 711/741 atomic regions from SNP 213255 to 213855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,086 DEBUG Processing 656/727 atomic regions from SNP 196596 to 197196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,121 DEBUG Processing 582/698 atomic regions from SNP 174531 to 175131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,165 DEBUG Processing 12/657 atomic regions from SNP 3311 to 3912 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,220 DEBUG Processing 712/741 atomic regions from SNP 213555 to 214155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,341 DEBUG Processing 657/727 atomic regions from SNP 196896 to 197496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,391 DEBUG Processing 13/657 atomic regions from SNP 3612 to 4213 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,408 DEBUG Processing 583/698 atomic regions from SNP 174831 to 175431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,458 DEBUG Processing 713/741 atomic regions from SNP 213855 to 214455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,587 DEBUG Processing 658/727 atomic regions from SNP 197196 to 197796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,627 DEBUG Processing 14/657 atomic regions from SNP 3913 to 4514 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,696 DEBUG Processing 584/698 atomic regions from SNP 175131 to 175731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:30,699 DEBUG Processing 714/741 atomic regions from SNP 214155 to 214755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,830 DEBUG Processing 659/727 atomic regions from SNP 197496 to 198096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:30,858 DEBUG Processing 15/657 atomic regions from SNP 4214 to 4815 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:30,947 DEBUG Processing 715/741 atomic regions from SNP 214455 to 215055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:30,985 DEBUG Processing 585/698 atomic regions from SNP 175431 to 176031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,072 DEBUG Processing 660/727 atomic regions from SNP 197796 to 198396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,089 DEBUG Processing 16/657 atomic regions from SNP 4515 to 5116 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,191 DEBUG Processing 716/741 atomic regions from SNP 214755 to 215355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,271 DEBUG Processing 586/698 atomic regions from SNP 175731 to 176331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,314 DEBUG Processing 661/727 atomic regions from SNP 198096 to 198696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,316 DEBUG Processing 17/657 atomic regions from SNP 4816 to 5417 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,324 DEBUG chr9 total SNP count: 216556 2025-01-31 09:52:31,324 DEBUG chr9 length: 124595110 2025-01-31 09:52:31,324 DEBUG ----------------------------------------- 2025-01-31 09:52:31,324 INFO Processing SNPs in chr9 2025-01-31 09:52:31,438 DEBUG Processing 717/741 atomic regions from SNP 215055 to 215655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,536 DEBUG Processing 18/657 atomic regions from SNP 5117 to 5718 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,547 DEBUG Processing 587/698 atomic regions from SNP 176031 to 176631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,555 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 216556)] 2025-01-31 09:52:31,559 DEBUG Processing 662/727 atomic regions from SNP 198396 to 198996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,674 DEBUG Processing 718/741 atomic regions from SNP 215355 to 215955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,711 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:52:31,753 DEBUG Processing 19/657 atomic regions from SNP 5418 to 6019 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:31,816 DEBUG Processing 663/727 atomic regions from SNP 198696 to 199296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:31,817 DEBUG Processing 588/698 atomic regions from SNP 176331 to 176931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:31,912 DEBUG Processing 719/741 atomic regions from SNP 215655 to 216255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:31,981 DEBUG Processing 20/657 atomic regions from SNP 5719 to 6320 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,068 DEBUG Processing 664/727 atomic regions from SNP 198996 to 199596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,096 DEBUG Processing 589/698 atomic regions from SNP 176631 to 177231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,151 DEBUG Processing 720/741 atomic regions from SNP 215955 to 216555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,199 DEBUG Processing 21/657 atomic regions from SNP 6020 to 6621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,308 DEBUG Processing 665/727 atomic regions from SNP 199296 to 199896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,374 DEBUG Processing 590/698 atomic regions from SNP 176931 to 177531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,392 DEBUG Processing 721/741 atomic regions from SNP 216255 to 216855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,418 DEBUG Processing 22/657 atomic regions from SNP 6321 to 6922 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,543 DEBUG Processing 666/727 atomic regions from SNP 199596 to 200196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,638 DEBUG Processing 23/657 atomic regions from SNP 6622 to 7223 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,657 DEBUG Processing 591/698 atomic regions from SNP 177231 to 177831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,669 DEBUG Processing 722/741 atomic regions from SNP 216555 to 217155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:32,803 DEBUG Processing 667/727 atomic regions from SNP 199896 to 200496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:32,854 DEBUG Processing 24/657 atomic regions from SNP 6923 to 7524 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:32,934 DEBUG Processing 592/698 atomic regions from SNP 177531 to 178131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:32,944 DEBUG Processing 723/741 atomic regions from SNP 216855 to 217455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,066 DEBUG Processing 25/657 atomic regions from SNP 7224 to 7825 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,078 DEBUG Processing 668/727 atomic regions from SNP 200196 to 200796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,192 DEBUG Processing 593/698 atomic regions from SNP 177831 to 178431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,223 DEBUG Processing 724/741 atomic regions from SNP 217155 to 217755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,288 DEBUG Processing 26/657 atomic regions from SNP 7525 to 8126 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,350 DEBUG Processing 669/727 atomic regions from SNP 200496 to 201096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,451 DEBUG Processing 594/698 atomic regions from SNP 178131 to 178731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,495 DEBUG Processing 725/741 atomic regions from SNP 217455 to 218055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,511 DEBUG Processing 27/657 atomic regions from SNP 7826 to 8427 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,610 DEBUG Processing 670/727 atomic regions from SNP 200796 to 201396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,712 DEBUG Processing 595/698 atomic regions from SNP 178431 to 179031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:33,735 DEBUG Processing 28/657 atomic regions from SNP 8127 to 8728 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,768 DEBUG Processing 726/741 atomic regions from SNP 217755 to 218355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:33,877 DEBUG Processing 671/727 atomic regions from SNP 201096 to 201696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:33,957 DEBUG Processing 29/657 atomic regions from SNP 8428 to 9029 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:33,975 DEBUG Processing 596/698 atomic regions from SNP 178731 to 179331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,029 DEBUG Processing 727/741 atomic regions from SNP 218055 to 218655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,152 DEBUG Processing 672/727 atomic regions from SNP 201396 to 201996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,178 DEBUG Processing 30/657 atomic regions from SNP 8729 to 9330 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,245 DEBUG Processing 597/698 atomic regions from SNP 179031 to 179631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,282 DEBUG Processing 728/741 atomic regions from SNP 218355 to 218955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,395 DEBUG Processing 31/657 atomic regions from SNP 9030 to 9631 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,426 DEBUG Processing 673/727 atomic regions from SNP 201696 to 202296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,498 DEBUG Processing 598/698 atomic regions from SNP 179331 to 179931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,561 DEBUG Processing 729/741 atomic regions from SNP 218655 to 219255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,614 DEBUG Processing 32/657 atomic regions from SNP 9331 to 9932 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,697 DEBUG Processing 674/727 atomic regions from SNP 201996 to 202596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,731 DEBUG Processing 599/698 atomic regions from SNP 179631 to 180231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:34,839 DEBUG Processing 33/657 atomic regions from SNP 9632 to 10233 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:34,842 DEBUG Processing 730/741 atomic regions from SNP 218955 to 219555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:34,959 DEBUG Processing 675/727 atomic regions from SNP 202296 to 202896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:34,961 DEBUG Processing 600/698 atomic regions from SNP 179931 to 180531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,065 DEBUG Processing 34/657 atomic regions from SNP 9933 to 10534 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,126 DEBUG Processing 731/741 atomic regions from SNP 219255 to 219855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,193 DEBUG Processing 601/698 atomic regions from SNP 180231 to 180831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,221 DEBUG Processing 676/727 atomic regions from SNP 202596 to 203196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,288 DEBUG Processing 35/657 atomic regions from SNP 10234 to 10835 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,402 DEBUG Processing 732/741 atomic regions from SNP 219555 to 220155 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,426 DEBUG Processing 602/698 atomic regions from SNP 180531 to 181131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,473 DEBUG Processing 677/727 atomic regions from SNP 202896 to 203496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,516 DEBUG Processing 36/657 atomic regions from SNP 10535 to 11136 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,661 DEBUG Processing 603/698 atomic regions from SNP 180831 to 181431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,674 DEBUG Processing 733/741 atomic regions from SNP 219855 to 220455 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,731 DEBUG Processing 678/727 atomic regions from SNP 203196 to 203796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:35,739 DEBUG Processing 37/657 atomic regions from SNP 10836 to 11437 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,899 DEBUG Processing 604/698 atomic regions from SNP 181131 to 181731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:35,934 DEBUG Processing 734/741 atomic regions from SNP 220155 to 220755 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:35,966 DEBUG Processing 38/657 atomic regions from SNP 11137 to 11738 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:35,993 DEBUG Processing 679/727 atomic regions from SNP 203496 to 204096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,134 DEBUG Processing 605/698 atomic regions from SNP 181431 to 182031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,173 DEBUG Processing 735/741 atomic regions from SNP 220455 to 221055 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,190 DEBUG Processing 39/657 atomic regions from SNP 11438 to 12039 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,253 DEBUG Processing 680/727 atomic regions from SNP 203796 to 204396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,392 DEBUG Processing 606/698 atomic regions from SNP 181731 to 182331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,412 DEBUG Processing 736/741 atomic regions from SNP 220755 to 221355 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,412 DEBUG Processing 40/657 atomic regions from SNP 11739 to 12340 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,531 DEBUG Processing 681/727 atomic regions from SNP 204096 to 204696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,634 DEBUG Processing 41/657 atomic regions from SNP 12040 to 12641 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,635 DEBUG Processing 607/698 atomic regions from SNP 182031 to 182631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,652 DEBUG Processing 737/741 atomic regions from SNP 221055 to 221655 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:36,799 DEBUG Processing 682/727 atomic regions from SNP 204396 to 204996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:36,857 DEBUG Processing 42/657 atomic regions from SNP 12341 to 12942 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:36,880 DEBUG Processing 608/698 atomic regions from SNP 182331 to 182931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:36,894 DEBUG Processing 738/741 atomic regions from SNP 221355 to 221955 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,069 DEBUG Processing 683/727 atomic regions from SNP 204696 to 205296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,080 DEBUG Processing 43/657 atomic regions from SNP 12642 to 13243 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,145 DEBUG Processing 609/698 atomic regions from SNP 182631 to 183231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,145 DEBUG Processing 739/741 atomic regions from SNP 221655 to 222255 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,304 DEBUG Processing 44/657 atomic regions from SNP 12943 to 13544 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,340 DEBUG Processing 684/727 atomic regions from SNP 204996 to 205596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,390 DEBUG Processing 740/741 atomic regions from SNP 221955 to 222555 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,415 DEBUG Processing 610/698 atomic regions from SNP 182931 to 183531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,523 DEBUG Processing 45/657 atomic regions from SNP 13244 to 13845 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,609 DEBUG Processing 685/727 atomic regions from SNP 205296 to 205896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,634 DEBUG Processing 741/741 atomic regions from SNP 222255 to 222855 for chr10 (subchromosome 1 of 1). 2025-01-31 09:52:37,669 DEBUG Processing 611/698 atomic regions from SNP 183231 to 183831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,758 DEBUG Processing 46/657 atomic regions from SNP 13545 to 14146 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:37,781 DEBUG Unique SNPs positions in subchromosome 1: 222856 2025-01-31 09:52:37,883 DEBUG Processing 686/727 atomic regions from SNP 205596 to 206196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:37,919 DEBUG Processing 612/698 atomic regions from SNP 183531 to 184131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:37,972 DEBUG Processing 47/657 atomic regions from SNP 13846 to 14447 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,161 DEBUG Processing 687/727 atomic regions from SNP 205896 to 206496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,164 DEBUG Processing 613/698 atomic regions from SNP 183831 to 184431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,192 DEBUG Processing 48/657 atomic regions from SNP 14147 to 14748 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,416 DEBUG Processing 614/698 atomic regions from SNP 184131 to 184731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,418 DEBUG Processing 49/657 atomic regions from SNP 14448 to 15049 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,446 DEBUG Processing 688/727 atomic regions from SNP 206196 to 206796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,646 DEBUG Processing 50/657 atomic regions from SNP 14749 to 15350 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,665 DEBUG Processing 615/698 atomic regions from SNP 184431 to 185031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:38,727 DEBUG Processing 689/727 atomic regions from SNP 206496 to 207096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:38,870 DEBUG Processing 51/657 atomic regions from SNP 15050 to 15651 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:38,915 DEBUG Processing 616/698 atomic regions from SNP 184731 to 185331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,003 DEBUG Processing 690/727 atomic regions from SNP 206796 to 207396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,091 DEBUG Processing 52/657 atomic regions from SNP 15351 to 15952 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,166 DEBUG Processing 617/698 atomic regions from SNP 185031 to 185631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,274 DEBUG Processing 691/727 atomic regions from SNP 207096 to 207696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,320 DEBUG Processing 53/657 atomic regions from SNP 15652 to 16253 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,426 DEBUG Processing 618/698 atomic regions from SNP 185331 to 185931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,546 DEBUG Processing 54/657 atomic regions from SNP 15953 to 16554 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,554 DEBUG Processing 692/727 atomic regions from SNP 207396 to 207996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,677 DEBUG Processing 619/698 atomic regions from SNP 185631 to 186231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,767 DEBUG Processing 55/657 atomic regions from SNP 16254 to 16855 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:39,832 DEBUG Processing 693/727 atomic regions from SNP 207696 to 208296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:39,928 DEBUG Processing 620/698 atomic regions from SNP 185931 to 186531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:39,999 DEBUG Processing 56/657 atomic regions from SNP 16555 to 17156 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,124 DEBUG Processing 694/727 atomic regions from SNP 207996 to 208596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,210 DEBUG Processing 621/698 atomic regions from SNP 186231 to 186831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,227 DEBUG Processing 57/657 atomic regions from SNP 16856 to 17457 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,403 DEBUG Processing 695/727 atomic regions from SNP 208296 to 208896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,459 DEBUG Processing 58/657 atomic regions from SNP 17157 to 17758 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,482 DEBUG Processing 622/698 atomic regions from SNP 186531 to 187131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,685 DEBUG Processing 59/657 atomic regions from SNP 17458 to 18059 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,688 DEBUG Processing 696/727 atomic regions from SNP 208596 to 209196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:40,753 DEBUG Processing 623/698 atomic regions from SNP 186831 to 187431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:40,913 DEBUG Processing 60/657 atomic regions from SNP 17759 to 18360 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:40,967 DEBUG Processing 697/727 atomic regions from SNP 208896 to 209496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,017 DEBUG Processing 624/698 atomic regions from SNP 187131 to 187731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,133 DEBUG Processing 61/657 atomic regions from SNP 18060 to 18661 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,242 DEBUG Processing 698/727 atomic regions from SNP 209196 to 209796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,283 DEBUG Processing 625/698 atomic regions from SNP 187431 to 188031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,355 DEBUG Processing 62/657 atomic regions from SNP 18361 to 18962 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,509 DEBUG Processing 699/727 atomic regions from SNP 209496 to 210096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,537 DEBUG Processing 626/698 atomic regions from SNP 187731 to 188331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,592 DEBUG Processing 63/657 atomic regions from SNP 18662 to 19263 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:41,766 DEBUG Processing 700/727 atomic regions from SNP 209796 to 210396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:41,789 DEBUG Processing 627/698 atomic regions from SNP 188031 to 188631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:41,838 DEBUG Processing 64/657 atomic regions from SNP 18963 to 19564 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,032 DEBUG Processing 701/727 atomic regions from SNP 210096 to 210696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,063 DEBUG Processing 628/698 atomic regions from SNP 188331 to 188931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,066 DEBUG Processing 65/657 atomic regions from SNP 19264 to 19865 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,293 DEBUG Processing 66/657 atomic regions from SNP 19565 to 20166 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,300 DEBUG Processing 702/727 atomic regions from SNP 210396 to 210996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,323 DEBUG Processing 629/698 atomic regions from SNP 188631 to 189231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,515 DEBUG Processing 67/657 atomic regions from SNP 19866 to 20467 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,558 DEBUG Processing 703/727 atomic regions from SNP 210696 to 211296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,576 DEBUG Processing 630/698 atomic regions from SNP 188931 to 189531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,727 DEBUG Processing 68/657 atomic regions from SNP 20167 to 20768 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:42,808 DEBUG Processing 704/727 atomic regions from SNP 210996 to 211596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:42,826 DEBUG Processing 631/698 atomic regions from SNP 189231 to 189831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:42,942 DEBUG Processing 69/657 atomic regions from SNP 20468 to 21069 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,061 DEBUG Processing 705/727 atomic regions from SNP 211296 to 211896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,071 DEBUG Processing 632/698 atomic regions from SNP 189531 to 190131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,167 DEBUG Processing 70/657 atomic regions from SNP 20769 to 21370 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,321 DEBUG Processing 706/727 atomic regions from SNP 211596 to 212196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,328 DEBUG Processing 633/698 atomic regions from SNP 189831 to 190431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,431 DEBUG Processing 71/657 atomic regions from SNP 21070 to 21671 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,578 DEBUG Processing 634/698 atomic regions from SNP 190131 to 190731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,578 DEBUG Processing 707/727 atomic regions from SNP 211896 to 212496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,689 DEBUG Processing 72/657 atomic regions from SNP 21371 to 21972 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:43,820 DEBUG Processing 635/698 atomic regions from SNP 190431 to 191031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:43,832 DEBUG Processing 708/727 atomic regions from SNP 212196 to 212796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:43,954 DEBUG Processing 73/657 atomic regions from SNP 21672 to 22273 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,061 DEBUG Processing 636/698 atomic regions from SNP 190731 to 191331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,076 DEBUG Processing 709/727 atomic regions from SNP 212496 to 213096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,211 DEBUG Processing 74/657 atomic regions from SNP 21973 to 22574 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,304 DEBUG Processing 637/698 atomic regions from SNP 191031 to 191631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,340 DEBUG Processing 710/727 atomic regions from SNP 212796 to 213396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,477 DEBUG Processing 75/657 atomic regions from SNP 22274 to 22875 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,557 DEBUG Processing 638/698 atomic regions from SNP 191331 to 191931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,600 DEBUG Processing 711/727 atomic regions from SNP 213096 to 213696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:44,743 DEBUG Processing 76/657 atomic regions from SNP 22575 to 23176 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:44,807 DEBUG Processing 639/698 atomic regions from SNP 191631 to 192231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:44,879 DEBUG Processing 712/727 atomic regions from SNP 213396 to 213996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,050 DEBUG Processing 77/657 atomic regions from SNP 22876 to 23477 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,194 DEBUG Processing 640/698 atomic regions from SNP 191931 to 192531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,255 DEBUG Processing 713/727 atomic regions from SNP 213696 to 214296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,306 DEBUG Processing 78/657 atomic regions from SNP 23177 to 23778 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,457 DEBUG Processing 641/698 atomic regions from SNP 192231 to 192831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,511 DEBUG Processing 714/727 atomic regions from SNP 213996 to 214596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,565 DEBUG Processing 79/657 atomic regions from SNP 23478 to 24079 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,701 DEBUG Processing 642/698 atomic regions from SNP 192531 to 193131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:45,789 DEBUG Processing 715/727 atomic regions from SNP 214296 to 214896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:45,810 DEBUG Processing 80/657 atomic regions from SNP 23779 to 24380 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:45,940 DEBUG Processing 643/698 atomic regions from SNP 192831 to 193431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,036 DEBUG Processing 81/657 atomic regions from SNP 24080 to 24681 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,037 DEBUG Processing 716/727 atomic regions from SNP 214596 to 215196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,158 DEBUG Subchromosome time: 219.07429826108273, subchromosome SNPs: 222856 2025-01-31 09:52:46,158 DEBUG Estimated BADs: [0.94, 3.77, 0.94, 1.88, 0.47, 1.88, 0.63, 1.88, 5.65, 1.88, 0.27, 0.94, 5.65, 0.27, 1.88, 0.94, 5.65, 18.85, 1.88, 3.77, 0.94, 0.63, 1.88, 0.94, 11.31, 1.88] SNP counts: [1457, 3408, 12106, 3586, 2996, 26487, 11140, 2988, 6383, 6006, 5078, 14673, 9329, 2392, 10002, 7242, 7446, 3845, 19958, 7031, 6900, 15571, 25217, 5158, 3556, 2901] SNP IDs counts: [1457, 3408, 12106, 3586, 2996, 26487, 11140, 2988, 6383, 6006, 5078, 14673, 9329, 2392, 10002, 7242, 7446, 3845, 19958, 7031, 6900, 15571, 25217, 5158, 3556, 2901] Critical gap: 620340bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.95Mbp, 5.85Mbp, 12.92Mbp, 14.88Mbp, 16.76Mbp, 31.79Mbp, 38.41Mbp, 40.11Mbp, 43.51Mbp, 46.83Mbp, 50.14Mbp, 59.22Mbp, 64.19Mbp, 65.87Mbp, 71.32Mbp, 75.50Mbp, 79.65Mbp, 81.65Mbp, 93.04Mbp, 96.77Mbp, 100.74Mbp, 109.98Mbp, 123.97Mbp, 126.89Mbp, 128.77Mbp, 130.69Mbp] 2025-01-31 09:52:46,158 DEBUG chr10 time: 219.074949564063 s 2025-01-31 09:52:46,190 DEBUG Processing 644/698 atomic regions from SNP 193131 to 193731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,292 DEBUG Processing 717/727 atomic regions from SNP 214896 to 215496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,307 DEBUG Processing 82/657 atomic regions from SNP 24381 to 24982 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,323 DEBUG chr10: Fitting background model for 26 segments 2025-01-31 09:52:46,449 DEBUG Processing 645/698 atomic regions from SNP 193431 to 194031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,535 DEBUG Processing 718/727 atomic regions from SNP 215196 to 215796 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,561 DEBUG Processing 83/657 atomic regions from SNP 24682 to 25283 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,700 DEBUG Processing 646/698 atomic regions from SNP 193731 to 194331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:46,782 DEBUG Processing 719/727 atomic regions from SNP 215496 to 216096 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:46,825 DEBUG Processing 84/657 atomic regions from SNP 24983 to 25584 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:46,955 DEBUG Processing 647/698 atomic regions from SNP 194031 to 194631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,022 DEBUG Processing 720/727 atomic regions from SNP 215796 to 216396 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,082 DEBUG Processing 85/657 atomic regions from SNP 25284 to 25885 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,205 DEBUG Processing 648/698 atomic regions from SNP 194331 to 194931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,258 DEBUG Processing 721/727 atomic regions from SNP 216096 to 216696 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,311 DEBUG Processing 86/657 atomic regions from SNP 25585 to 26186 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,453 DEBUG Processing 649/698 atomic regions from SNP 194631 to 195231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,496 DEBUG Processing 722/727 atomic regions from SNP 216396 to 216996 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,532 DEBUG Processing 87/657 atomic regions from SNP 25886 to 26487 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,698 DEBUG Processing 650/698 atomic regions from SNP 194931 to 195531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,735 DEBUG Processing 723/727 atomic regions from SNP 216696 to 217296 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,755 DEBUG Processing 88/657 atomic regions from SNP 26187 to 26788 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:47,939 DEBUG Processing 651/698 atomic regions from SNP 195231 to 195831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:47,977 DEBUG Processing 724/727 atomic regions from SNP 216996 to 217596 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:47,978 DEBUG Processing 89/657 atomic regions from SNP 26488 to 27089 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,181 DEBUG Processing 652/698 atomic regions from SNP 195531 to 196131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,205 DEBUG Processing 90/657 atomic regions from SNP 26789 to 27390 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,223 DEBUG Processing 725/727 atomic regions from SNP 217296 to 217896 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,423 DEBUG Processing 653/698 atomic regions from SNP 195831 to 196431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,430 DEBUG Processing 91/657 atomic regions from SNP 27090 to 27691 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,477 DEBUG Processing 726/727 atomic regions from SNP 217596 to 218196 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,656 DEBUG Processing 92/657 atomic regions from SNP 27391 to 27992 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,669 DEBUG Processing 654/698 atomic regions from SNP 196131 to 196731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:48,731 DEBUG Processing 727/727 atomic regions from SNP 217896 to 218496 for chr8 (subchromosome 1 of 1). 2025-01-31 09:52:48,865 DEBUG Processing 93/657 atomic regions from SNP 27692 to 28293 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:48,883 DEBUG Unique SNPs positions in subchromosome 1: 218497 2025-01-31 09:52:48,901 DEBUG Processing 655/698 atomic regions from SNP 196431 to 197031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,081 DEBUG Processing 94/657 atomic regions from SNP 27993 to 28594 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,130 DEBUG Processing 656/698 atomic regions from SNP 196731 to 197331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,299 DEBUG Processing 95/657 atomic regions from SNP 28294 to 28895 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,363 DEBUG Processing 657/698 atomic regions from SNP 197031 to 197631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,526 DEBUG Processing 96/657 atomic regions from SNP 28595 to 29196 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,604 DEBUG Processing 658/698 atomic regions from SNP 197331 to 197931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,752 DEBUG Processing 97/657 atomic regions from SNP 28896 to 29497 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:49,842 DEBUG Processing 659/698 atomic regions from SNP 197631 to 198231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:49,966 DEBUG Processing 98/657 atomic regions from SNP 29197 to 29798 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,104 DEBUG Processing 660/698 atomic regions from SNP 197931 to 198531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,186 DEBUG Processing 99/657 atomic regions from SNP 29498 to 30099 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,348 DEBUG Processing 661/698 atomic regions from SNP 198231 to 198831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,429 DEBUG Processing 100/657 atomic regions from SNP 29799 to 30400 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,588 DEBUG Processing 662/698 atomic regions from SNP 198531 to 199131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,669 DEBUG Processing 101/657 atomic regions from SNP 30100 to 30701 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:50,823 DEBUG Processing 663/698 atomic regions from SNP 198831 to 199431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:50,880 DEBUG Processing 102/657 atomic regions from SNP 30401 to 31002 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,061 DEBUG Processing 664/698 atomic regions from SNP 199131 to 199731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,094 DEBUG Processing 103/657 atomic regions from SNP 30702 to 31303 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,301 DEBUG Processing 665/698 atomic regions from SNP 199431 to 200031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,313 DEBUG Processing 104/657 atomic regions from SNP 31003 to 31604 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,533 DEBUG Processing 105/657 atomic regions from SNP 31304 to 31905 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,541 DEBUG Processing 666/698 atomic regions from SNP 199731 to 200331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,758 DEBUG Processing 106/657 atomic regions from SNP 31605 to 32206 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:51,782 DEBUG Processing 667/698 atomic regions from SNP 200031 to 200631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:51,992 DEBUG Processing 107/657 atomic regions from SNP 31906 to 32507 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,055 DEBUG Processing 668/698 atomic regions from SNP 200331 to 200931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,216 DEBUG Processing 108/657 atomic regions from SNP 32207 to 32808 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,304 DEBUG Processing 669/698 atomic regions from SNP 200631 to 201231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,438 DEBUG Processing 109/657 atomic regions from SNP 32508 to 33109 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,556 DEBUG Processing 670/698 atomic regions from SNP 200931 to 201531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,679 DEBUG Processing 110/657 atomic regions from SNP 32809 to 33410 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:52,795 DEBUG Processing 671/698 atomic regions from SNP 201231 to 201831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:52,923 DEBUG Processing 111/657 atomic regions from SNP 33110 to 33711 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,066 DEBUG Processing 672/698 atomic regions from SNP 201531 to 202131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,155 DEBUG Processing 112/657 atomic regions from SNP 33411 to 34012 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,337 DEBUG Processing 673/698 atomic regions from SNP 201831 to 202431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,377 DEBUG Processing 113/657 atomic regions from SNP 33712 to 34313 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,599 DEBUG Processing 114/657 atomic regions from SNP 34013 to 34614 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,616 DEBUG Processing 674/698 atomic regions from SNP 202131 to 202731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:53,829 DEBUG Processing 115/657 atomic regions from SNP 34314 to 34915 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:53,906 DEBUG Processing 675/698 atomic regions from SNP 202431 to 203031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,048 DEBUG Processing 116/657 atomic regions from SNP 34615 to 35216 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,187 DEBUG Processing 676/698 atomic regions from SNP 202731 to 203331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,269 DEBUG Processing 117/657 atomic regions from SNP 34916 to 35517 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,464 DEBUG Processing 677/698 atomic regions from SNP 203031 to 203631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,493 DEBUG Processing 118/657 atomic regions from SNP 35217 to 35818 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,720 DEBUG Processing 119/657 atomic regions from SNP 35518 to 36119 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:54,738 DEBUG Processing 678/698 atomic regions from SNP 203331 to 203931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:54,957 DEBUG Processing 120/657 atomic regions from SNP 35819 to 36420 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,025 DEBUG Processing 679/698 atomic regions from SNP 203631 to 204231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,186 DEBUG Processing 121/657 atomic regions from SNP 36120 to 36721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,307 DEBUG Processing 680/698 atomic regions from SNP 203931 to 204531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,411 DEBUG Processing 122/657 atomic regions from SNP 36421 to 37022 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,581 DEBUG Processing 681/698 atomic regions from SNP 204231 to 204831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,639 DEBUG Processing 123/657 atomic regions from SNP 36722 to 37323 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:55,881 DEBUG Processing 682/698 atomic regions from SNP 204531 to 205131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:55,887 DEBUG Processing 124/657 atomic regions from SNP 37023 to 37624 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,117 DEBUG Processing 125/657 atomic regions from SNP 37324 to 37925 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,145 DEBUG Processing 683/698 atomic regions from SNP 204831 to 205431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,363 DEBUG Processing 126/657 atomic regions from SNP 37625 to 38226 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,402 DEBUG Processing 684/698 atomic regions from SNP 205131 to 205731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,583 DEBUG Processing 127/657 atomic regions from SNP 37926 to 38527 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,652 DEBUG Processing 685/698 atomic regions from SNP 205431 to 206031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:56,806 DEBUG Processing 128/657 atomic regions from SNP 38227 to 38828 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:56,905 DEBUG Processing 686/698 atomic regions from SNP 205731 to 206331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,035 DEBUG Processing 129/657 atomic regions from SNP 38528 to 39129 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,162 DEBUG Processing 687/698 atomic regions from SNP 206031 to 206631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,267 DEBUG Processing 130/657 atomic regions from SNP 38829 to 39430 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,421 DEBUG Processing 688/698 atomic regions from SNP 206331 to 206931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,508 DEBUG Processing 131/657 atomic regions from SNP 39130 to 39731 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:57,694 DEBUG Processing 689/698 atomic regions from SNP 206631 to 207231 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:57,796 DEBUG Processing 132/657 atomic regions from SNP 39431 to 40032 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,077 DEBUG Processing 690/698 atomic regions from SNP 206931 to 207531 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,103 DEBUG Processing 133/657 atomic regions from SNP 39732 to 40333 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,364 DEBUG Processing 691/698 atomic regions from SNP 207231 to 207831 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,374 DEBUG Processing 134/657 atomic regions from SNP 40033 to 40634 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,613 DEBUG Processing 692/698 atomic regions from SNP 207531 to 208131 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,636 DEBUG Processing 135/657 atomic regions from SNP 40334 to 40935 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:58,871 DEBUG Processing 693/698 atomic regions from SNP 207831 to 208431 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:58,905 DEBUG Processing 136/657 atomic regions from SNP 40635 to 41236 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,074 DEBUG Segmenting atomic regions: 2025-01-31 09:52:59,122 DEBUG Processing 694/698 atomic regions from SNP 208131 to 208731 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,153 DEBUG Processing 137/657 atomic regions from SNP 40936 to 41537 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,177 DEBUG Processing 1/720 atomic regions from SNP 0 to 601 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,383 DEBUG Processing 695/698 atomic regions from SNP 208431 to 209031 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,411 DEBUG Processing 2/720 atomic regions from SNP 301 to 902 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,412 DEBUG Processing 138/657 atomic regions from SNP 41237 to 41838 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,637 DEBUG Processing 696/698 atomic regions from SNP 208731 to 209331 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,653 DEBUG Processing 3/720 atomic regions from SNP 602 to 1203 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,679 DEBUG Processing 139/657 atomic regions from SNP 41538 to 42139 for chr14 (subchromosome 2 of 2). 2025-01-31 09:52:59,890 DEBUG Processing 697/698 atomic regions from SNP 209031 to 209631 for chr7 (subchromosome 3 of 3). 2025-01-31 09:52:59,891 DEBUG Processing 4/720 atomic regions from SNP 903 to 1504 for chr9 (subchromosome 1 of 1). 2025-01-31 09:52:59,942 DEBUG Processing 140/657 atomic regions from SNP 41839 to 42440 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,125 DEBUG Processing 5/720 atomic regions from SNP 1204 to 1805 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,153 DEBUG Processing 698/698 atomic regions from SNP 209331 to 209931 for chr7 (subchromosome 3 of 3). 2025-01-31 09:53:00,218 DEBUG Processing 141/657 atomic regions from SNP 42140 to 42741 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,303 DEBUG Unique SNPs positions in subchromosome 3: 209932 2025-01-31 09:53:00,358 DEBUG Processing 6/720 atomic regions from SNP 1505 to 2106 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,461 DEBUG Processing 142/657 atomic regions from SNP 42441 to 43042 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,591 DEBUG Processing 7/720 atomic regions from SNP 1806 to 2407 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,692 DEBUG Processing 143/657 atomic regions from SNP 42742 to 43343 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:00,823 DEBUG Processing 8/720 atomic regions from SNP 2107 to 2708 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:00,947 DEBUG Processing 144/657 atomic regions from SNP 43043 to 43644 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,054 DEBUG Processing 9/720 atomic regions from SNP 2408 to 3009 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,203 DEBUG Processing 145/657 atomic regions from SNP 43344 to 43945 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,277 DEBUG Processing 10/720 atomic regions from SNP 2709 to 3310 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,450 DEBUG Processing 146/657 atomic regions from SNP 43645 to 44246 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,502 DEBUG Processing 11/720 atomic regions from SNP 3010 to 3611 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,680 DEBUG Processing 147/657 atomic regions from SNP 43946 to 44547 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,735 DEBUG Processing 12/720 atomic regions from SNP 3311 to 3912 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:01,910 DEBUG Processing 148/657 atomic regions from SNP 44247 to 44848 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:01,971 DEBUG Processing 13/720 atomic regions from SNP 3612 to 4213 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,131 DEBUG Processing 149/657 atomic regions from SNP 44548 to 45149 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,201 DEBUG Processing 14/720 atomic regions from SNP 3913 to 4514 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,370 DEBUG Processing 150/657 atomic regions from SNP 44849 to 45450 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,436 DEBUG Processing 15/720 atomic regions from SNP 4214 to 4815 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,598 DEBUG Processing 151/657 atomic regions from SNP 45150 to 45751 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,662 DEBUG Processing 16/720 atomic regions from SNP 4515 to 5116 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:02,828 DEBUG Processing 152/657 atomic regions from SNP 45451 to 46052 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:02,887 DEBUG Processing 17/720 atomic regions from SNP 4816 to 5417 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,054 DEBUG Processing 153/657 atomic regions from SNP 45752 to 46353 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,111 DEBUG Processing 18/720 atomic regions from SNP 5117 to 5718 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,288 DEBUG Processing 154/657 atomic regions from SNP 46053 to 46654 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,344 DEBUG Processing 19/720 atomic regions from SNP 5418 to 6019 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,525 DEBUG Processing 155/657 atomic regions from SNP 46354 to 46955 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,577 DEBUG Processing 20/720 atomic regions from SNP 5719 to 6320 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,755 DEBUG Processing 156/657 atomic regions from SNP 46655 to 47256 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:03,826 DEBUG Processing 21/720 atomic regions from SNP 6020 to 6621 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:03,986 DEBUG Processing 157/657 atomic regions from SNP 46956 to 47557 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,061 DEBUG Processing 22/720 atomic regions from SNP 6321 to 6922 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,236 DEBUG Processing 158/657 atomic regions from SNP 47257 to 47858 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,299 DEBUG Processing 23/720 atomic regions from SNP 6622 to 7223 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,460 DEBUG Processing 159/657 atomic regions from SNP 47558 to 48159 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,526 DEBUG Processing 24/720 atomic regions from SNP 6923 to 7524 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,707 DEBUG Processing 160/657 atomic regions from SNP 47859 to 48460 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,756 DEBUG Processing 25/720 atomic regions from SNP 7224 to 7825 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:04,969 DEBUG Processing 161/657 atomic regions from SNP 48160 to 48761 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:04,985 DEBUG Processing 26/720 atomic regions from SNP 7525 to 8126 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,201 DEBUG Processing 162/657 atomic regions from SNP 48461 to 49062 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,225 DEBUG Processing 27/720 atomic regions from SNP 7826 to 8427 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,426 DEBUG Processing 163/657 atomic regions from SNP 48762 to 49363 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,462 DEBUG Processing 28/720 atomic regions from SNP 8127 to 8728 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,668 DEBUG Processing 164/657 atomic regions from SNP 49063 to 49664 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,702 DEBUG Processing 29/720 atomic regions from SNP 8428 to 9029 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:05,898 DEBUG Processing 165/657 atomic regions from SNP 49364 to 49965 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:05,931 DEBUG Processing 30/720 atomic regions from SNP 8729 to 9330 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,129 DEBUG Processing 166/657 atomic regions from SNP 49665 to 50266 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,169 DEBUG Processing 31/720 atomic regions from SNP 9030 to 9631 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,358 DEBUG Processing 167/657 atomic regions from SNP 49966 to 50567 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,403 DEBUG Processing 32/720 atomic regions from SNP 9331 to 9932 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,602 DEBUG Processing 168/657 atomic regions from SNP 50267 to 50868 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,655 DEBUG Processing 33/720 atomic regions from SNP 9632 to 10233 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:06,824 DEBUG Processing 169/657 atomic regions from SNP 50568 to 51169 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:06,891 DEBUG Processing 34/720 atomic regions from SNP 9933 to 10534 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,043 DEBUG Processing 170/657 atomic regions from SNP 50869 to 51470 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,131 DEBUG Processing 35/720 atomic regions from SNP 10234 to 10835 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,265 DEBUG Processing 171/657 atomic regions from SNP 51170 to 51771 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,372 DEBUG Processing 36/720 atomic regions from SNP 10535 to 11136 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,486 DEBUG Processing 172/657 atomic regions from SNP 51471 to 52072 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,609 DEBUG Processing 37/720 atomic regions from SNP 10836 to 11437 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,712 DEBUG Processing 173/657 atomic regions from SNP 51772 to 52373 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:07,843 DEBUG Processing 38/720 atomic regions from SNP 11137 to 11738 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:07,938 DEBUG Processing 174/657 atomic regions from SNP 52073 to 52674 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,065 DEBUG Processing 39/720 atomic regions from SNP 11438 to 12039 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,158 DEBUG Processing 175/657 atomic regions from SNP 52374 to 52975 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,286 DEBUG Processing 40/720 atomic regions from SNP 11739 to 12340 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,293 DEBUG chr11: Estimating proportion of background vs signal 2025-01-31 09:53:08,379 DEBUG Processing 176/657 atomic regions from SNP 52675 to 53276 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,522 DEBUG Processing 41/720 atomic regions from SNP 12040 to 12641 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,596 DEBUG Processing 177/657 atomic regions from SNP 52976 to 53577 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,754 DEBUG Processing 42/720 atomic regions from SNP 12341 to 12942 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:08,819 DEBUG Processing 178/657 atomic regions from SNP 53277 to 53878 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:08,983 DEBUG Processing 43/720 atomic regions from SNP 12642 to 13243 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,047 DEBUG Processing 179/657 atomic regions from SNP 53578 to 54179 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,145 DEBUG Subchromosome time: 229.2074860839639, subchromosome SNPs: 218497 2025-01-31 09:53:09,146 DEBUG Estimated BADs: [4.54, 0.25, 1.14, 4.54, 2.27, 0.57, 2.27, 0.76, 2.27, 0.32, 1.14, 0.45, 2.27, 0.57, 4.54, 0.57, 22.72, 1.14, 20.44, 6.81, 2.27, 13.63, 2.27, 6.81, 0.38, 1.14, 6.81, 2.27, 6.81, 2.27, 4.54, 15.90, 6.81, 2.27] SNP counts: [2848, 4144, 3836, 6746, 5089, 2708, 17418, 5991, 8690, 3619, 2985, 3607, 9609, 13524, 876, 4717, 99, 14760, 2240, 2484, 19252, 2952, 16750, 4230, 10574, 3192, 5196, 6262, 2189, 8689, 4704, 8713, 5504, 4300] SNP IDs counts: [2848, 4144, 3836, 6746, 5089, 2708, 17418, 5991, 8690, 3619, 2985, 3607, 9609, 13524, 876, 4717, 99, 14760, 2240, 2484, 19252, 2952, 16750, 4230, 10574, 3192, 5196, 6262, 2189, 8689, 4704, 8713, 5504, 4300] Critical gap: 620280bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.07Mbp], 4.78Mbp, 7.57Mbp, 9.72Mbp, 13.28Mbp, 16.15Mbp, 17.68Mbp, 29.16Mbp, 32.72Mbp, 37.51Mbp, 39.72Mbp, 41.49Mbp, 43.77Mbp, 49.05Mbp, 57.49Mbp, 57.96Mbp, 60.94Mbp, 60.99Mbp, 69.75Mbp, 70.91Mbp, 72.46Mbp, 83.57Mbp, 85.10Mbp, 94.16Mbp, 96.45Mbp, 102.79Mbp, 104.53Mbp, 107.38Mbp, 110.70Mbp, 111.85Mbp, 116.87Mbp, 119.36Mbp, 124.00Mbp, 126.90Mbp, 129.40Mbp] 2025-01-31 09:53:09,146 DEBUG chr8 time: 229.2081309739733 s 2025-01-31 09:53:09,213 DEBUG Processing 44/720 atomic regions from SNP 12943 to 13544 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,285 DEBUG Processing 180/657 atomic regions from SNP 53879 to 54480 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,333 DEBUG chr8: Fitting background model for 34 segments 2025-01-31 09:53:09,442 DEBUG Processing 45/720 atomic regions from SNP 13244 to 13845 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,510 DEBUG Processing 181/657 atomic regions from SNP 54180 to 54781 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,685 DEBUG Processing 46/720 atomic regions from SNP 13545 to 14146 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,732 DEBUG Processing 182/657 atomic regions from SNP 54481 to 55082 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:09,918 DEBUG Processing 47/720 atomic regions from SNP 13846 to 14447 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:09,950 DEBUG Processing 183/657 atomic regions from SNP 54782 to 55383 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,143 DEBUG Processing 48/720 atomic regions from SNP 14147 to 14748 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,170 DEBUG Processing 184/657 atomic regions from SNP 55083 to 55684 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,377 DEBUG Processing 49/720 atomic regions from SNP 14448 to 15049 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,400 DEBUG Processing 185/657 atomic regions from SNP 55384 to 55985 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,627 DEBUG Processing 50/720 atomic regions from SNP 14749 to 15350 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:10,632 DEBUG Processing 186/657 atomic regions from SNP 55685 to 56286 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,854 DEBUG Processing 187/657 atomic regions from SNP 55986 to 56587 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:10,864 DEBUG Processing 51/720 atomic regions from SNP 15050 to 15651 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,087 DEBUG Processing 188/657 atomic regions from SNP 56287 to 56888 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,103 DEBUG Processing 52/720 atomic regions from SNP 15351 to 15952 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,311 DEBUG Processing 189/657 atomic regions from SNP 56588 to 57189 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,342 DEBUG Processing 53/720 atomic regions from SNP 15652 to 16253 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,537 DEBUG Processing 190/657 atomic regions from SNP 56889 to 57490 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,572 DEBUG Processing 54/720 atomic regions from SNP 15953 to 16554 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,757 DEBUG Processing 191/657 atomic regions from SNP 57190 to 57791 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:11,799 DEBUG Processing 55/720 atomic regions from SNP 16254 to 16855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:11,984 DEBUG Processing 192/657 atomic regions from SNP 57491 to 58092 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,021 DEBUG Processing 56/720 atomic regions from SNP 16555 to 17156 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,206 DEBUG Processing 193/657 atomic regions from SNP 57792 to 58393 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,238 DEBUG Processing 57/720 atomic regions from SNP 16856 to 17457 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,424 DEBUG Processing 194/657 atomic regions from SNP 58093 to 58694 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,456 DEBUG Processing 58/720 atomic regions from SNP 17157 to 17758 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,642 DEBUG Processing 195/657 atomic regions from SNP 58394 to 58995 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,675 DEBUG Processing 59/720 atomic regions from SNP 17458 to 18059 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:12,866 DEBUG Processing 196/657 atomic regions from SNP 58695 to 59296 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:12,903 DEBUG Processing 60/720 atomic regions from SNP 17759 to 18360 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,102 DEBUG Processing 197/657 atomic regions from SNP 58996 to 59597 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,121 DEBUG Processing 61/720 atomic regions from SNP 18060 to 18661 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,327 DEBUG Processing 198/657 atomic regions from SNP 59297 to 59898 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,338 DEBUG Processing 62/720 atomic regions from SNP 18361 to 18962 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,541 DEBUG Processing 199/657 atomic regions from SNP 59598 to 60199 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,561 DEBUG Processing 63/720 atomic regions from SNP 18662 to 19263 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,761 DEBUG Processing 200/657 atomic regions from SNP 59899 to 60500 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:13,780 DEBUG Processing 64/720 atomic regions from SNP 18963 to 19564 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:13,974 DEBUG Processing 201/657 atomic regions from SNP 60200 to 60801 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,000 DEBUG Processing 65/720 atomic regions from SNP 19264 to 19865 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,188 DEBUG Processing 202/657 atomic regions from SNP 60501 to 61102 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,220 DEBUG Processing 66/720 atomic regions from SNP 19565 to 20166 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,407 DEBUG Processing 203/657 atomic regions from SNP 60802 to 61403 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,473 DEBUG Processing 67/720 atomic regions from SNP 19866 to 20467 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,624 DEBUG Processing 204/657 atomic regions from SNP 61103 to 61704 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,721 DEBUG Processing 68/720 atomic regions from SNP 20167 to 20768 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:14,843 DEBUG Processing 205/657 atomic regions from SNP 61404 to 62005 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:14,940 DEBUG Processing 69/720 atomic regions from SNP 20468 to 21069 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,099 DEBUG Processing 206/657 atomic regions from SNP 61705 to 62306 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,164 DEBUG Processing 70/720 atomic regions from SNP 20769 to 21370 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,345 DEBUG Processing 207/657 atomic regions from SNP 62006 to 62607 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,387 DEBUG Processing 71/720 atomic regions from SNP 21070 to 21671 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,592 DEBUG Processing 208/657 atomic regions from SNP 62307 to 62908 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,615 DEBUG Processing 72/720 atomic regions from SNP 21371 to 21972 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:15,829 DEBUG Processing 209/657 atomic regions from SNP 62608 to 63209 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:15,844 DEBUG Processing 73/720 atomic regions from SNP 21672 to 22273 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,059 DEBUG Processing 210/657 atomic regions from SNP 62909 to 63510 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,075 DEBUG Processing 74/720 atomic regions from SNP 21973 to 22574 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,287 DEBUG Processing 211/657 atomic regions from SNP 63210 to 63811 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,305 DEBUG Processing 75/720 atomic regions from SNP 22274 to 22875 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,517 DEBUG Processing 212/657 atomic regions from SNP 63511 to 64112 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,539 DEBUG Processing 76/720 atomic regions from SNP 22575 to 23176 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,737 DEBUG Processing 213/657 atomic regions from SNP 63812 to 64413 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:16,773 DEBUG Processing 77/720 atomic regions from SNP 22876 to 23477 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:16,957 DEBUG Processing 214/657 atomic regions from SNP 64113 to 64714 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,006 DEBUG Processing 78/720 atomic regions from SNP 23177 to 23778 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,198 DEBUG Processing 215/657 atomic regions from SNP 64414 to 65015 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,235 DEBUG Processing 79/720 atomic regions from SNP 23478 to 24079 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,427 DEBUG Processing 216/657 atomic regions from SNP 64715 to 65316 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,465 DEBUG Processing 80/720 atomic regions from SNP 23779 to 24380 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,670 DEBUG Processing 217/657 atomic regions from SNP 65016 to 65617 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,691 DEBUG Processing 81/720 atomic regions from SNP 24080 to 24681 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,910 DEBUG Processing 218/657 atomic regions from SNP 65317 to 65918 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:17,917 DEBUG Processing 82/720 atomic regions from SNP 24381 to 24982 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:17,925 DEBUG Subchromosome time: 222.43989222706296, subchromosome SNPs: 209932 2025-01-31 09:53:17,926 DEBUG Estimated BADs: [0.95, 7.64, 0.48, 3.82, 0.38, 1.91, 15.27, 0.48, 7.64, 0.95, 9.55, 0.00, 0.64, 7.64, 0.95, 5.73, 0.32, 3.82, 0.95, 7.64, 0.95, 3.82, 15.27, 5.73, 0.48, 3.82, 0.38, 1.91, 0.27, 1.91, 0.38, 5.73, 1.91, 0.64, 1.91, 0.48, 1.91, 5.73, 1.91, 0.27, 1.91, 0.64, 7.64, 0.27, 1.91, 3.82, 1.91, 0.64, 3.82, 1.91, 9.55, 1.91, 3.82, 1.91, 9.55, 3.82] SNP counts: [888, 2316, 799, 2531, 2914, 943, 266, 3211, 2257, 2449, 1974, 23, 1479, 2989, 1845, 7327, 1778, 3945, 4014, 421, 7604, 1692, 1653, 2803, 1965, 2800, 2315, 1021, 5304, 2128, 10773, 1249, 8419, 7815, 5140, 2635, 2425, 3324, 7160, 5724, 3612, 3988, 184, 4191, 5705, 6708, 5919, 4612, 3464, 28315, 4559, 3432, 5688, 13366, 1653, 6789] SNP IDs counts: [888, 2316, 799, 2531, 2914, 943, 266, 3211, 2257, 2449, 1974, 23, 1479, 2989, 1845, 7327, 1778, 3945, 4014, 421, 7604, 1692, 1653, 2803, 1965, 2800, 2315, 1021, 5304, 2128, 10773, 1249, 8419, 7815, 5140, 2635, 2425, 3324, 7160, 5724, 3612, 3988, 184, 4191, 5705, 6708, 5919, 4612, 3464, 28315, 4559, 3432, 5688, 13366, 1653, 6789] Critical gap: 670574bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 3.61Mbp, 5.13Mbp, 5.73Mbp, 7.30Mbp, 12.29Mbp, 12.92Mbp, 13.06Mbp, 15.91Mbp, 17.10Mbp, 19.00Mbp, 20.07Mbp[0.71Mbp], 21.30Mbp[1.48Mbp], 24.29Mbp, 25.92Mbp, 27.16Mbp, 31.17Mbp, 33.79Mbp, 35.93Mbp, 38.07Mbp, 38.29Mbp, 43.88Mbp, 44.81Mbp, 45.68Mbp, 47.15Mbp, 48.46Mbp, 49.99Mbp, 51.46Mbp, 52.02Mbp, 55.35Mbp, 56.63Mbp, 63.85Mbp, 64.56Mbp, 69.13Mbp, 73.52Mbp, 76.41Mbp, 77.92Mbp, 79.23Mbp, 80.99Mbp, 84.92Mbp, 88.56Mbp, 90.61Mbp, 92.87Mbp, 92.98Mbp, 95.60Mbp, 98.69Mbp, 102.21Mbp, 105.82Mbp, 109.09Mbp, 110.92Mbp, 126.24Mbp, 128.66Mbp, 130.53Mbp, 133.56Mbp, 140.82Mbp, 141.69Mbp, 145.44Mbp] 2025-01-31 09:53:17,926 DEBUG chr7 time: 222.44067718007136 s 2025-01-31 09:53:18,099 DEBUG chr7: Fitting background model for 55 segments 2025-01-31 09:53:18,152 DEBUG Processing 83/720 atomic regions from SNP 24682 to 25283 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,159 DEBUG Processing 219/657 atomic regions from SNP 65618 to 66219 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,396 DEBUG Processing 84/720 atomic regions from SNP 24983 to 25584 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,423 DEBUG Processing 220/657 atomic regions from SNP 65919 to 66520 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,642 DEBUG Processing 85/720 atomic regions from SNP 25284 to 25885 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,659 DEBUG Processing 221/657 atomic regions from SNP 66220 to 66821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:18,881 DEBUG Processing 86/720 atomic regions from SNP 25585 to 26186 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:18,890 DEBUG Processing 222/657 atomic regions from SNP 66521 to 67121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,129 DEBUG Processing 87/720 atomic regions from SNP 25886 to 26487 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,148 DEBUG Processing 223/657 atomic regions from SNP 66821 to 67421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,362 DEBUG Processing 88/720 atomic regions from SNP 26187 to 26788 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,381 DEBUG Processing 224/657 atomic regions from SNP 67121 to 67721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,595 DEBUG Processing 89/720 atomic regions from SNP 26488 to 27089 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,616 DEBUG Processing 225/657 atomic regions from SNP 67421 to 68021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:19,832 DEBUG Processing 90/720 atomic regions from SNP 26789 to 27390 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:19,867 DEBUG Processing 226/657 atomic regions from SNP 67721 to 68321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,062 DEBUG Processing 91/720 atomic regions from SNP 27090 to 27691 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,093 DEBUG Processing 227/657 atomic regions from SNP 68021 to 68621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,299 DEBUG Processing 92/720 atomic regions from SNP 27391 to 27992 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,327 DEBUG Processing 228/657 atomic regions from SNP 68321 to 68921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,536 DEBUG Processing 93/720 atomic regions from SNP 27692 to 28293 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,566 DEBUG Processing 229/657 atomic regions from SNP 68621 to 69221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:20,776 DEBUG Processing 94/720 atomic regions from SNP 27993 to 28594 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:20,793 DEBUG Processing 230/657 atomic regions from SNP 68921 to 69521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,017 DEBUG Processing 95/720 atomic regions from SNP 28294 to 28895 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,018 DEBUG Processing 231/657 atomic regions from SNP 69221 to 69821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,243 DEBUG Processing 232/657 atomic regions from SNP 69521 to 70121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,250 DEBUG Processing 96/720 atomic regions from SNP 28595 to 29196 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,462 DEBUG Processing 233/657 atomic regions from SNP 69821 to 70421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,480 DEBUG Processing 97/720 atomic regions from SNP 28896 to 29497 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,688 DEBUG Processing 234/657 atomic regions from SNP 70121 to 70721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,734 DEBUG Processing 98/720 atomic regions from SNP 29197 to 29798 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:21,902 DEBUG Processing 235/657 atomic regions from SNP 70421 to 71021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:21,986 DEBUG Processing 99/720 atomic regions from SNP 29498 to 30099 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,117 DEBUG Processing 236/657 atomic regions from SNP 70721 to 71321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,245 DEBUG Processing 100/720 atomic regions from SNP 29799 to 30400 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,337 DEBUG Processing 237/657 atomic regions from SNP 71021 to 71621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,511 DEBUG Processing 101/720 atomic regions from SNP 30100 to 30701 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,569 DEBUG Processing 238/657 atomic regions from SNP 71321 to 71921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:22,779 DEBUG Processing 102/720 atomic regions from SNP 30401 to 31002 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:22,829 DEBUG Processing 239/657 atomic regions from SNP 71621 to 72221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,048 DEBUG Processing 103/720 atomic regions from SNP 30702 to 31303 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,097 DEBUG Processing 240/657 atomic regions from SNP 71921 to 72521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,316 DEBUG Processing 104/720 atomic regions from SNP 31003 to 31604 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,342 DEBUG Processing 241/657 atomic regions from SNP 72221 to 72821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,571 DEBUG Processing 242/657 atomic regions from SNP 72521 to 73121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,579 DEBUG Processing 105/720 atomic regions from SNP 31304 to 31905 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:23,804 DEBUG Processing 243/657 atomic regions from SNP 72821 to 73421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:23,852 DEBUG Processing 106/720 atomic regions from SNP 31605 to 32206 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,024 DEBUG Processing 244/657 atomic regions from SNP 73121 to 73721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,123 DEBUG Processing 107/720 atomic regions from SNP 31906 to 32507 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,288 DEBUG Processing 245/657 atomic regions from SNP 73421 to 74021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,371 DEBUG Processing 108/720 atomic regions from SNP 32207 to 32808 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,544 DEBUG Processing 246/657 atomic regions from SNP 73721 to 74321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,624 DEBUG Processing 109/720 atomic regions from SNP 32508 to 33109 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:24,809 DEBUG Processing 247/657 atomic regions from SNP 74021 to 74621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:24,868 DEBUG Processing 110/720 atomic regions from SNP 32809 to 33410 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,036 DEBUG Processing 248/657 atomic regions from SNP 74321 to 74921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,095 DEBUG Processing 111/720 atomic regions from SNP 33110 to 33711 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,263 DEBUG Processing 249/657 atomic regions from SNP 74621 to 75221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,329 DEBUG Processing 112/720 atomic regions from SNP 33411 to 34012 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,491 DEBUG Processing 250/657 atomic regions from SNP 74921 to 75521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,564 DEBUG Processing 113/720 atomic regions from SNP 33712 to 34313 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,712 DEBUG Processing 251/657 atomic regions from SNP 75221 to 75821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:25,796 DEBUG Processing 114/720 atomic regions from SNP 34013 to 34614 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:25,930 DEBUG Processing 252/657 atomic regions from SNP 75521 to 76121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,034 DEBUG Processing 115/720 atomic regions from SNP 34314 to 34915 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,153 DEBUG Processing 253/657 atomic regions from SNP 75821 to 76421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,266 DEBUG Processing 116/720 atomic regions from SNP 34615 to 35216 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,399 DEBUG Processing 254/657 atomic regions from SNP 76121 to 76721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,494 DEBUG Processing 117/720 atomic regions from SNP 34916 to 35517 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,646 DEBUG Processing 255/657 atomic regions from SNP 76421 to 77021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,714 DEBUG Processing 118/720 atomic regions from SNP 35217 to 35818 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:26,903 DEBUG Processing 256/657 atomic regions from SNP 76721 to 77321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:26,934 DEBUG Processing 119/720 atomic regions from SNP 35518 to 36119 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,168 DEBUG Processing 120/720 atomic regions from SNP 35819 to 36420 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,169 DEBUG Processing 257/657 atomic regions from SNP 77021 to 77621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,405 DEBUG Processing 121/720 atomic regions from SNP 36120 to 36721 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,430 DEBUG Processing 258/657 atomic regions from SNP 77321 to 77921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,643 DEBUG Processing 122/720 atomic regions from SNP 36421 to 37022 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,692 DEBUG Processing 259/657 atomic regions from SNP 77621 to 78221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:27,881 DEBUG Processing 123/720 atomic regions from SNP 36722 to 37323 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:27,950 DEBUG Processing 260/657 atomic regions from SNP 77921 to 78521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,136 DEBUG Processing 124/720 atomic regions from SNP 37023 to 37624 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,182 DEBUG Processing 261/657 atomic regions from SNP 78221 to 78821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,376 DEBUG Processing 125/720 atomic regions from SNP 37324 to 37925 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,440 DEBUG Processing 262/657 atomic regions from SNP 78521 to 79121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,603 DEBUG Processing 126/720 atomic regions from SNP 37625 to 38226 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,702 DEBUG Processing 263/657 atomic regions from SNP 78821 to 79421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:28,830 DEBUG Processing 127/720 atomic regions from SNP 37926 to 38527 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:28,959 DEBUG Processing 264/657 atomic regions from SNP 79121 to 79721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,062 DEBUG Processing 128/720 atomic regions from SNP 38227 to 38828 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,187 DEBUG Processing 265/657 atomic regions from SNP 79421 to 80021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,294 DEBUG Processing 129/720 atomic regions from SNP 38528 to 39129 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,409 DEBUG Processing 266/657 atomic regions from SNP 79721 to 80321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,520 DEBUG Processing 130/720 atomic regions from SNP 38829 to 39430 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,633 DEBUG Processing 267/657 atomic regions from SNP 80021 to 80621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,744 DEBUG Processing 131/720 atomic regions from SNP 39130 to 39731 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:29,854 DEBUG Processing 268/657 atomic regions from SNP 80321 to 80921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:29,966 DEBUG Processing 132/720 atomic regions from SNP 39431 to 40032 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,072 DEBUG Processing 269/657 atomic regions from SNP 80621 to 81221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,188 DEBUG Processing 133/720 atomic regions from SNP 39732 to 40333 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,310 DEBUG Processing 270/657 atomic regions from SNP 80921 to 81521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,432 DEBUG Processing 134/720 atomic regions from SNP 40033 to 40634 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,548 DEBUG Processing 271/657 atomic regions from SNP 81221 to 81821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,669 DEBUG Processing 135/720 atomic regions from SNP 40334 to 40935 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,762 DEBUG Processing 272/657 atomic regions from SNP 81521 to 82121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:30,900 DEBUG Processing 136/720 atomic regions from SNP 40635 to 41236 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:30,981 DEBUG Processing 273/657 atomic regions from SNP 81821 to 82421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,135 DEBUG Processing 137/720 atomic regions from SNP 40936 to 41537 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,204 DEBUG Processing 274/657 atomic regions from SNP 82121 to 82721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,369 DEBUG Processing 138/720 atomic regions from SNP 41237 to 41838 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,430 DEBUG Processing 275/657 atomic regions from SNP 82421 to 83021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,594 DEBUG Processing 139/720 atomic regions from SNP 41538 to 42139 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,674 DEBUG Processing 276/657 atomic regions from SNP 82721 to 83321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:31,824 DEBUG Processing 140/720 atomic regions from SNP 41839 to 42440 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:31,931 DEBUG Processing 277/657 atomic regions from SNP 83021 to 83621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,055 DEBUG Processing 141/720 atomic regions from SNP 42140 to 42741 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,162 DEBUG Processing 278/657 atomic regions from SNP 83321 to 83921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,285 DEBUG Processing 142/720 atomic regions from SNP 42441 to 43042 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,398 DEBUG Processing 279/657 atomic regions from SNP 83621 to 84221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,517 DEBUG Processing 143/720 atomic regions from SNP 42742 to 43343 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,626 DEBUG Processing 280/657 atomic regions from SNP 83921 to 84521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,753 DEBUG Processing 144/720 atomic regions from SNP 43043 to 43644 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:32,856 DEBUG Processing 281/657 atomic regions from SNP 84221 to 84821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:32,986 DEBUG Processing 145/720 atomic regions from SNP 43344 to 43945 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,074 DEBUG Processing 282/657 atomic regions from SNP 84521 to 85121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,215 DEBUG Processing 146/720 atomic regions from SNP 43645 to 44246 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,297 DEBUG Processing 283/657 atomic regions from SNP 84821 to 85421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,444 DEBUG Processing 147/720 atomic regions from SNP 43946 to 44547 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,519 DEBUG Processing 284/657 atomic regions from SNP 85121 to 85721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,680 DEBUG Processing 148/720 atomic regions from SNP 44247 to 44848 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,736 DEBUG Processing 285/657 atomic regions from SNP 85421 to 86021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:33,913 DEBUG Processing 149/720 atomic regions from SNP 44548 to 45149 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:33,950 DEBUG Processing 286/657 atomic regions from SNP 85721 to 86321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,140 DEBUG Processing 150/720 atomic regions from SNP 44849 to 45450 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,170 DEBUG Processing 287/657 atomic regions from SNP 86021 to 86621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,375 DEBUG Processing 151/720 atomic regions from SNP 45150 to 45751 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,403 DEBUG Processing 288/657 atomic regions from SNP 86321 to 86921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,623 DEBUG Processing 152/720 atomic regions from SNP 45451 to 46052 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:34,635 DEBUG Processing 289/657 atomic regions from SNP 86621 to 87221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,859 DEBUG Processing 290/657 atomic regions from SNP 86921 to 87521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:34,866 DEBUG Processing 153/720 atomic regions from SNP 45752 to 46353 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,103 DEBUG Processing 154/720 atomic regions from SNP 46053 to 46654 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,104 DEBUG Processing 291/657 atomic regions from SNP 87221 to 87821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,328 DEBUG Processing 292/657 atomic regions from SNP 87521 to 88121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,339 DEBUG Processing 155/720 atomic regions from SNP 46354 to 46955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,557 DEBUG Processing 293/657 atomic regions from SNP 87821 to 88421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,587 DEBUG Processing 156/720 atomic regions from SNP 46655 to 47256 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:35,785 DEBUG Processing 294/657 atomic regions from SNP 88121 to 88721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:35,827 DEBUG Processing 157/720 atomic regions from SNP 46956 to 47557 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,011 DEBUG Processing 295/657 atomic regions from SNP 88421 to 89021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,066 DEBUG Processing 158/720 atomic regions from SNP 47257 to 47858 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,227 DEBUG Processing 296/657 atomic regions from SNP 88721 to 89321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,308 DEBUG Processing 159/720 atomic regions from SNP 47558 to 48159 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,465 DEBUG Processing 297/657 atomic regions from SNP 89021 to 89621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,554 DEBUG Processing 160/720 atomic regions from SNP 47859 to 48460 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,689 DEBUG Processing 298/657 atomic regions from SNP 89321 to 89921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:36,811 DEBUG Processing 161/720 atomic regions from SNP 48160 to 48761 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:36,931 DEBUG Processing 299/657 atomic regions from SNP 89621 to 90221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,069 DEBUG Processing 162/720 atomic regions from SNP 48461 to 49062 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,170 DEBUG Processing 300/657 atomic regions from SNP 89921 to 90521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,211 DEBUG chr11:0-122082543: Signal thresholds approximated 2025-01-31 09:53:37,212 DEBUG chr11: Signal quantile: 0.984. signal threshold: 15. Best RMSEA: 0.011 2025-01-31 09:53:37,306 DEBUG Processing 163/720 atomic regions from SNP 48762 to 49363 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,386 DEBUG Processing 301/657 atomic regions from SNP 90221 to 90821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,545 DEBUG Processing 164/720 atomic regions from SNP 49063 to 49664 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,597 DEBUG Processing 302/657 atomic regions from SNP 90521 to 91121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:37,775 DEBUG Processing 165/720 atomic regions from SNP 49364 to 49965 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:37,809 DEBUG Processing 303/657 atomic regions from SNP 90821 to 91421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,012 DEBUG Processing 166/720 atomic regions from SNP 49665 to 50266 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,026 DEBUG Processing 304/657 atomic regions from SNP 91121 to 91721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,246 DEBUG Processing 305/657 atomic regions from SNP 91421 to 92021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,252 DEBUG Processing 167/720 atomic regions from SNP 49966 to 50567 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,491 DEBUG Processing 306/657 atomic regions from SNP 91721 to 92321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,503 DEBUG Processing 168/720 atomic regions from SNP 50267 to 50868 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,734 DEBUG Processing 307/657 atomic regions from SNP 92021 to 92621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,743 DEBUG Processing 169/720 atomic regions from SNP 50568 to 51169 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:38,968 DEBUG Processing 308/657 atomic regions from SNP 92321 to 92921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:38,978 DEBUG Processing 170/720 atomic regions from SNP 50869 to 51470 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,209 DEBUG Processing 309/657 atomic regions from SNP 92621 to 93221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,217 DEBUG Processing 171/720 atomic regions from SNP 51170 to 51771 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,445 DEBUG Processing 310/657 atomic regions from SNP 92921 to 93521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,464 DEBUG Processing 172/720 atomic regions from SNP 51471 to 52072 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,493 DEBUG chr11 total SNP count: 211647 2025-01-31 09:53:39,493 DEBUG chr11 length: 122082543 2025-01-31 09:53:39,493 DEBUG ----------------------------------------- 2025-01-31 09:53:39,494 INFO Processing SNPs in chr11 2025-01-31 09:53:39,673 DEBUG Processing 311/657 atomic regions from SNP 93221 to 93821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,700 DEBUG Processing 173/720 atomic regions from SNP 51772 to 52373 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:39,722 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 211647)] 2025-01-31 09:53:39,877 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:53:39,894 DEBUG Processing 312/657 atomic regions from SNP 93521 to 94121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:39,937 DEBUG Processing 174/720 atomic regions from SNP 52073 to 52674 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,118 DEBUG Processing 313/657 atomic regions from SNP 93821 to 94421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,171 DEBUG Processing 175/720 atomic regions from SNP 52374 to 52975 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,342 DEBUG Processing 314/657 atomic regions from SNP 94121 to 94721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,406 DEBUG Processing 176/720 atomic regions from SNP 52675 to 53276 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,579 DEBUG Processing 315/657 atomic regions from SNP 94421 to 95021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,655 DEBUG Processing 177/720 atomic regions from SNP 52976 to 53577 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:40,804 DEBUG Processing 316/657 atomic regions from SNP 94721 to 95321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:40,900 DEBUG Processing 178/720 atomic regions from SNP 53277 to 53878 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,044 DEBUG Processing 317/657 atomic regions from SNP 95021 to 95621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,143 DEBUG Processing 179/720 atomic regions from SNP 53578 to 54179 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,268 DEBUG Processing 318/657 atomic regions from SNP 95321 to 95921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,384 DEBUG Processing 180/720 atomic regions from SNP 53879 to 54480 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,483 DEBUG Processing 319/657 atomic regions from SNP 95621 to 96221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,623 DEBUG Processing 181/720 atomic regions from SNP 54180 to 54781 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,696 DEBUG Processing 320/657 atomic regions from SNP 95921 to 96521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:41,858 DEBUG Processing 182/720 atomic regions from SNP 54481 to 55082 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:41,941 DEBUG Processing 321/657 atomic regions from SNP 96221 to 96821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,092 DEBUG Processing 183/720 atomic regions from SNP 54782 to 55383 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,188 DEBUG Processing 322/657 atomic regions from SNP 96521 to 97121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,327 DEBUG Processing 184/720 atomic regions from SNP 55083 to 55684 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,428 DEBUG Processing 323/657 atomic regions from SNP 96821 to 97421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,582 DEBUG Processing 185/720 atomic regions from SNP 55384 to 55985 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,645 DEBUG Processing 324/657 atomic regions from SNP 97121 to 97721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:42,816 DEBUG Processing 186/720 atomic regions from SNP 55685 to 56286 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:42,859 DEBUG Processing 325/657 atomic regions from SNP 97421 to 98021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,062 DEBUG Processing 187/720 atomic regions from SNP 55986 to 56587 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,089 DEBUG Processing 326/657 atomic regions from SNP 97721 to 98321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,300 DEBUG Processing 188/720 atomic regions from SNP 56287 to 56888 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,303 DEBUG Processing 327/657 atomic regions from SNP 98021 to 98621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,515 DEBUG Processing 328/657 atomic regions from SNP 98321 to 98921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,531 DEBUG Processing 189/720 atomic regions from SNP 56588 to 57189 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,730 DEBUG Processing 329/657 atomic regions from SNP 98621 to 99221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,762 DEBUG Processing 190/720 atomic regions from SNP 56889 to 57490 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:43,940 DEBUG Processing 330/657 atomic regions from SNP 98921 to 99521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:43,986 DEBUG Processing 191/720 atomic regions from SNP 57190 to 57791 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,155 DEBUG Processing 331/657 atomic regions from SNP 99221 to 99821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,223 DEBUG Processing 192/720 atomic regions from SNP 57491 to 58092 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,366 DEBUG Processing 332/657 atomic regions from SNP 99521 to 100121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,463 DEBUG Processing 193/720 atomic regions from SNP 57792 to 58393 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,604 DEBUG Processing 333/657 atomic regions from SNP 99821 to 100421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,696 DEBUG Processing 194/720 atomic regions from SNP 58093 to 58694 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:44,815 DEBUG Processing 334/657 atomic regions from SNP 100121 to 100721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:44,924 DEBUG chr13: Estimating proportion of background vs signal 2025-01-31 09:53:44,934 DEBUG Processing 195/720 atomic regions from SNP 58394 to 58995 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,015 DEBUG Processing 335/657 atomic regions from SNP 100421 to 101021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,175 DEBUG Processing 196/720 atomic regions from SNP 58695 to 59296 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,226 DEBUG Processing 336/657 atomic regions from SNP 100721 to 101321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,413 DEBUG Processing 197/720 atomic regions from SNP 58996 to 59597 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,436 DEBUG Processing 337/657 atomic regions from SNP 101021 to 101621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,644 DEBUG Processing 198/720 atomic regions from SNP 59297 to 59898 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:45,644 DEBUG Processing 338/657 atomic regions from SNP 101321 to 101921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,863 DEBUG Processing 339/657 atomic regions from SNP 101621 to 102221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:45,878 DEBUG Processing 199/720 atomic regions from SNP 59598 to 60199 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,082 DEBUG Processing 340/657 atomic regions from SNP 101921 to 102521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,118 DEBUG Processing 200/720 atomic regions from SNP 59899 to 60500 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,305 DEBUG Processing 341/657 atomic regions from SNP 102221 to 102821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,357 DEBUG Processing 201/720 atomic regions from SNP 60200 to 60801 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,523 DEBUG Processing 342/657 atomic regions from SNP 102521 to 103121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,598 DEBUG Processing 202/720 atomic regions from SNP 60501 to 61102 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,740 DEBUG Processing 343/657 atomic regions from SNP 102821 to 103421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:46,840 DEBUG Processing 203/720 atomic regions from SNP 60802 to 61403 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:46,955 DEBUG Processing 344/657 atomic regions from SNP 103121 to 103721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,072 DEBUG Processing 204/720 atomic regions from SNP 61103 to 61704 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,166 DEBUG Processing 345/657 atomic regions from SNP 103421 to 104021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,298 DEBUG Processing 205/720 atomic regions from SNP 61404 to 62005 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,371 DEBUG Processing 346/657 atomic regions from SNP 103721 to 104321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,533 DEBUG Processing 206/720 atomic regions from SNP 61705 to 62306 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,602 DEBUG Processing 347/657 atomic regions from SNP 104021 to 104621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,761 DEBUG Processing 207/720 atomic regions from SNP 62006 to 62607 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:47,813 DEBUG Processing 348/657 atomic regions from SNP 104321 to 104921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:47,992 DEBUG Processing 208/720 atomic regions from SNP 62307 to 62908 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,032 DEBUG Processing 349/657 atomic regions from SNP 104621 to 105221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,220 DEBUG Processing 209/720 atomic regions from SNP 62608 to 63209 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,254 DEBUG Processing 350/657 atomic regions from SNP 104921 to 105521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,456 DEBUG Processing 210/720 atomic regions from SNP 62909 to 63510 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,473 DEBUG Processing 351/657 atomic regions from SNP 105221 to 105821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,695 DEBUG Processing 211/720 atomic regions from SNP 63210 to 63811 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,708 DEBUG Processing 352/657 atomic regions from SNP 105521 to 106121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:48,934 DEBUG Processing 212/720 atomic regions from SNP 63511 to 64112 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:48,947 DEBUG Processing 353/657 atomic regions from SNP 105821 to 106421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,170 DEBUG Processing 213/720 atomic regions from SNP 63812 to 64413 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,171 DEBUG Processing 354/657 atomic regions from SNP 106121 to 106721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,390 DEBUG Processing 355/657 atomic regions from SNP 106421 to 107021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,412 DEBUG Processing 214/720 atomic regions from SNP 64113 to 64714 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,606 DEBUG Processing 356/657 atomic regions from SNP 106721 to 107321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,661 DEBUG Processing 215/720 atomic regions from SNP 64414 to 65015 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:49,819 DEBUG Processing 357/657 atomic regions from SNP 107021 to 107621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:49,915 DEBUG Processing 216/720 atomic regions from SNP 64715 to 65316 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,030 DEBUG Processing 358/657 atomic regions from SNP 107321 to 107921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,173 DEBUG Processing 217/720 atomic regions from SNP 65016 to 65617 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,242 DEBUG Processing 359/657 atomic regions from SNP 107621 to 108221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,406 DEBUG Processing 218/720 atomic regions from SNP 65317 to 65918 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,459 DEBUG Processing 360/657 atomic regions from SNP 107921 to 108521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,640 DEBUG Processing 219/720 atomic regions from SNP 65618 to 66219 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,678 DEBUG Processing 361/657 atomic regions from SNP 108221 to 108821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:50,877 DEBUG Processing 220/720 atomic regions from SNP 65919 to 66520 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:50,896 DEBUG Processing 362/657 atomic regions from SNP 108521 to 109121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,102 DEBUG Processing 221/720 atomic regions from SNP 66220 to 66821 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,105 DEBUG Processing 363/657 atomic regions from SNP 108821 to 109421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,317 DEBUG Processing 364/657 atomic regions from SNP 109121 to 109721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,341 DEBUG Processing 222/720 atomic regions from SNP 66521 to 67122 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,535 DEBUG Processing 365/657 atomic regions from SNP 109421 to 110021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,570 DEBUG Processing 223/720 atomic regions from SNP 66822 to 67423 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,748 DEBUG Processing 366/657 atomic regions from SNP 109721 to 110321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:51,801 DEBUG Processing 224/720 atomic regions from SNP 67123 to 67724 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:51,975 DEBUG Processing 367/657 atomic regions from SNP 110021 to 110621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,040 DEBUG Processing 225/720 atomic regions from SNP 67424 to 68025 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,208 DEBUG Processing 368/657 atomic regions from SNP 110321 to 110921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,280 DEBUG Processing 226/720 atomic regions from SNP 67725 to 68326 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,441 DEBUG Processing 369/657 atomic regions from SNP 110621 to 111221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,518 DEBUG Processing 227/720 atomic regions from SNP 68026 to 68627 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,654 DEBUG Processing 370/657 atomic regions from SNP 110921 to 111521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:52,758 DEBUG Processing 228/720 atomic regions from SNP 68327 to 68928 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:52,867 DEBUG Processing 371/657 atomic regions from SNP 111221 to 111821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,000 DEBUG Processing 229/720 atomic regions from SNP 68628 to 69229 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,085 DEBUG Processing 372/657 atomic regions from SNP 111521 to 112121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,249 DEBUG Processing 230/720 atomic regions from SNP 68929 to 69530 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,307 DEBUG Processing 373/657 atomic regions from SNP 111821 to 112421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,495 DEBUG Processing 231/720 atomic regions from SNP 69230 to 69831 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,539 DEBUG Processing 374/657 atomic regions from SNP 112121 to 112721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,762 DEBUG Processing 232/720 atomic regions from SNP 69531 to 70132 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:53,776 DEBUG Processing 375/657 atomic regions from SNP 112421 to 113021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:53,999 DEBUG Processing 376/657 atomic regions from SNP 112721 to 113321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,015 DEBUG Processing 233/720 atomic regions from SNP 69832 to 70433 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,212 DEBUG Processing 377/657 atomic regions from SNP 113021 to 113621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,242 DEBUG Processing 234/720 atomic regions from SNP 70133 to 70734 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,426 DEBUG Processing 378/657 atomic regions from SNP 113321 to 113921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,475 DEBUG Processing 235/720 atomic regions from SNP 70434 to 71035 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,652 DEBUG Processing 379/657 atomic regions from SNP 113621 to 114221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,709 DEBUG Processing 236/720 atomic regions from SNP 70735 to 71336 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:54,875 DEBUG Processing 380/657 atomic regions from SNP 113921 to 114521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:54,974 DEBUG Processing 237/720 atomic regions from SNP 71036 to 71637 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,112 DEBUG Processing 381/657 atomic regions from SNP 114221 to 114821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,247 DEBUG Processing 238/720 atomic regions from SNP 71337 to 71938 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,335 DEBUG Processing 382/657 atomic regions from SNP 114521 to 115121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,519 DEBUG Processing 239/720 atomic regions from SNP 71638 to 72239 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,575 DEBUG Processing 383/657 atomic regions from SNP 114821 to 115421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:55,794 DEBUG Processing 240/720 atomic regions from SNP 71939 to 72540 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:55,831 DEBUG Processing 384/657 atomic regions from SNP 115121 to 115721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,052 DEBUG Processing 241/720 atomic regions from SNP 72240 to 72841 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,060 DEBUG Processing 385/657 atomic regions from SNP 115421 to 116021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,296 DEBUG Processing 386/657 atomic regions from SNP 115721 to 116321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,297 DEBUG Processing 242/720 atomic regions from SNP 72541 to 73142 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,524 DEBUG Processing 387/657 atomic regions from SNP 116021 to 116621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,534 DEBUG Processing 243/720 atomic regions from SNP 72842 to 73443 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,768 DEBUG Processing 388/657 atomic regions from SNP 116321 to 116921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:56,773 DEBUG Processing 244/720 atomic regions from SNP 73143 to 73744 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:56,994 DEBUG Processing 389/657 atomic regions from SNP 116621 to 117221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,010 DEBUG Processing 245/720 atomic regions from SNP 73444 to 74045 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,213 DEBUG Processing 390/657 atomic regions from SNP 116921 to 117521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,244 DEBUG Processing 246/720 atomic regions from SNP 73745 to 74346 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,426 DEBUG Processing 391/657 atomic regions from SNP 117221 to 117821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,478 DEBUG Processing 247/720 atomic regions from SNP 74046 to 74647 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,635 DEBUG Processing 392/657 atomic regions from SNP 117521 to 118121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,733 DEBUG Processing 248/720 atomic regions from SNP 74347 to 74948 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:57,850 DEBUG Processing 393/657 atomic regions from SNP 117821 to 118421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:57,990 DEBUG Processing 249/720 atomic regions from SNP 74648 to 75249 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,062 DEBUG Processing 394/657 atomic regions from SNP 118121 to 118721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,235 DEBUG Processing 250/720 atomic regions from SNP 74949 to 75550 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,282 DEBUG Processing 395/657 atomic regions from SNP 118421 to 119021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,477 DEBUG Processing 251/720 atomic regions from SNP 75250 to 75851 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,510 DEBUG Processing 396/657 atomic regions from SNP 118721 to 119321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,719 DEBUG Processing 252/720 atomic regions from SNP 75551 to 76152 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,733 DEBUG Processing 397/657 atomic regions from SNP 119021 to 119621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:58,952 DEBUG Processing 253/720 atomic regions from SNP 75852 to 76453 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:58,954 DEBUG Processing 398/657 atomic regions from SNP 119321 to 119921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,175 DEBUG Processing 399/657 atomic regions from SNP 119621 to 120221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,185 DEBUG Processing 254/720 atomic regions from SNP 76153 to 76754 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,393 DEBUG Processing 400/657 atomic regions from SNP 119921 to 120521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,418 DEBUG Processing 255/720 atomic regions from SNP 76454 to 77055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,608 DEBUG Processing 401/657 atomic regions from SNP 120221 to 120821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,652 DEBUG Processing 256/720 atomic regions from SNP 76755 to 77355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:53:59,826 DEBUG Processing 402/657 atomic regions from SNP 120521 to 121121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:53:59,888 DEBUG Processing 257/720 atomic regions from SNP 77055 to 77655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,044 DEBUG Processing 403/657 atomic regions from SNP 120821 to 121421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,116 DEBUG Processing 258/720 atomic regions from SNP 77355 to 77955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,268 DEBUG Processing 404/657 atomic regions from SNP 121121 to 121721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,351 DEBUG Processing 259/720 atomic regions from SNP 77655 to 78255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,506 DEBUG Processing 405/657 atomic regions from SNP 121421 to 122021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,584 DEBUG Processing 260/720 atomic regions from SNP 77955 to 78555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:00,758 DEBUG Processing 406/657 atomic regions from SNP 121721 to 122321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:00,824 DEBUG Processing 261/720 atomic regions from SNP 78255 to 78855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,007 DEBUG Processing 407/657 atomic regions from SNP 122021 to 122621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,062 DEBUG Processing 262/720 atomic regions from SNP 78555 to 79155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,223 DEBUG Processing 408/657 atomic regions from SNP 122321 to 122921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,299 DEBUG Processing 263/720 atomic regions from SNP 78855 to 79455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,369 DEBUG chr13:0-120421639: Signal thresholds approximated 2025-01-31 09:54:01,371 DEBUG chr13: Signal quantile: 0.990. signal threshold: 15. Best RMSEA: 0.012 2025-01-31 09:54:01,439 DEBUG Processing 409/657 atomic regions from SNP 122621 to 123221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,531 DEBUG Processing 264/720 atomic regions from SNP 79155 to 79755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,656 DEBUG Processing 410/657 atomic regions from SNP 122921 to 123521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,765 DEBUG Processing 265/720 atomic regions from SNP 79455 to 80055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:01,877 DEBUG Processing 411/657 atomic regions from SNP 123221 to 123821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:01,995 DEBUG Processing 266/720 atomic regions from SNP 79755 to 80355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,097 DEBUG Processing 412/657 atomic regions from SNP 123521 to 124121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,231 DEBUG Processing 267/720 atomic regions from SNP 80055 to 80655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,322 DEBUG Processing 413/657 atomic regions from SNP 123821 to 124421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,473 DEBUG Processing 268/720 atomic regions from SNP 80355 to 80955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,545 DEBUG Processing 414/657 atomic regions from SNP 124121 to 124721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,715 DEBUG Processing 269/720 atomic regions from SNP 80655 to 81255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,760 DEBUG Processing 415/657 atomic regions from SNP 124421 to 125021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:02,951 DEBUG Processing 270/720 atomic regions from SNP 80955 to 81555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:02,979 DEBUG Processing 416/657 atomic regions from SNP 124721 to 125321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,183 DEBUG Processing 271/720 atomic regions from SNP 81255 to 81855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,192 DEBUG Processing 417/657 atomic regions from SNP 125021 to 125621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,406 DEBUG Processing 418/657 atomic regions from SNP 125321 to 125921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,419 DEBUG Processing 272/720 atomic regions from SNP 81555 to 82155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,590 DEBUG chr13 total SNP count: 202960 2025-01-31 09:54:03,591 DEBUG chr13 length: 120421639 2025-01-31 09:54:03,591 DEBUG ----------------------------------------- 2025-01-31 09:54:03,591 INFO Processing SNPs in chr13 2025-01-31 09:54:03,632 DEBUG Processing 419/657 atomic regions from SNP 125621 to 126221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,652 DEBUG Processing 273/720 atomic regions from SNP 81855 to 82455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,809 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 202960)] 2025-01-31 09:54:03,844 DEBUG Processing 420/657 atomic regions from SNP 125921 to 126521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:03,885 DEBUG Processing 274/720 atomic regions from SNP 82155 to 82755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:03,957 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:04,056 DEBUG Processing 421/657 atomic regions from SNP 126221 to 126821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,121 DEBUG Processing 275/720 atomic regions from SNP 82455 to 83055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,267 DEBUG Processing 422/657 atomic regions from SNP 126521 to 127121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,350 DEBUG Processing 276/720 atomic regions from SNP 82755 to 83355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,481 DEBUG Processing 423/657 atomic regions from SNP 126821 to 127421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,577 DEBUG Processing 277/720 atomic regions from SNP 83055 to 83655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,696 DEBUG Processing 424/657 atomic regions from SNP 127121 to 127721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:04,816 DEBUG Processing 278/720 atomic regions from SNP 83355 to 83955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:04,915 DEBUG Processing 425/657 atomic regions from SNP 127421 to 128021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,070 DEBUG Processing 279/720 atomic regions from SNP 83655 to 84255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,132 DEBUG Processing 426/657 atomic regions from SNP 127721 to 128321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,318 DEBUG Processing 280/720 atomic regions from SNP 83955 to 84555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,348 DEBUG Processing 427/657 atomic regions from SNP 128021 to 128621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,554 DEBUG Processing 281/720 atomic regions from SNP 84255 to 84855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,568 DEBUG Processing 428/657 atomic regions from SNP 128321 to 128921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:05,784 DEBUG Processing 282/720 atomic regions from SNP 84555 to 85155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:05,786 DEBUG Processing 429/657 atomic regions from SNP 128621 to 129221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,002 DEBUG Processing 430/657 atomic regions from SNP 128921 to 129521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,016 DEBUG Processing 283/720 atomic regions from SNP 84855 to 85455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,029 DEBUG Segmenting atomic regions: 2025-01-31 09:54:06,130 DEBUG Processing 1/704 atomic regions from SNP 0 to 601 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,213 DEBUG Processing 431/657 atomic regions from SNP 129221 to 129821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,241 DEBUG Processing 284/720 atomic regions from SNP 85155 to 85755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,387 DEBUG Processing 2/704 atomic regions from SNP 301 to 902 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,429 DEBUG Processing 432/657 atomic regions from SNP 129521 to 130121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,467 DEBUG Processing 285/720 atomic regions from SNP 85455 to 86055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,627 DEBUG Processing 3/704 atomic regions from SNP 602 to 1203 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,652 DEBUG Processing 433/657 atomic regions from SNP 129821 to 130421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,698 DEBUG Processing 286/720 atomic regions from SNP 85755 to 86355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:06,855 DEBUG Processing 4/704 atomic regions from SNP 903 to 1504 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:06,869 DEBUG Processing 434/657 atomic regions from SNP 130121 to 130721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:06,925 DEBUG Processing 287/720 atomic regions from SNP 86055 to 86655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,085 DEBUG Processing 5/704 atomic regions from SNP 1204 to 1805 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,089 DEBUG Processing 435/657 atomic regions from SNP 130421 to 131021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,155 DEBUG Processing 288/720 atomic regions from SNP 86355 to 86955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,314 DEBUG Processing 436/657 atomic regions from SNP 130721 to 131321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,325 DEBUG Processing 6/704 atomic regions from SNP 1505 to 2106 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,383 DEBUG Processing 289/720 atomic regions from SNP 86655 to 87255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,544 DEBUG Processing 437/657 atomic regions from SNP 131021 to 131621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,586 DEBUG Processing 7/704 atomic regions from SNP 1806 to 2407 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,619 DEBUG Processing 290/720 atomic regions from SNP 86955 to 87555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,764 DEBUG Processing 438/657 atomic regions from SNP 131321 to 131921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:07,842 DEBUG Processing 8/704 atomic regions from SNP 2107 to 2708 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:07,852 DEBUG Processing 291/720 atomic regions from SNP 87255 to 87855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:07,986 DEBUG Processing 439/657 atomic regions from SNP 131621 to 132221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,071 DEBUG Processing 9/704 atomic regions from SNP 2408 to 3009 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,079 DEBUG Processing 292/720 atomic regions from SNP 87555 to 88155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,196 DEBUG Processing 440/657 atomic regions from SNP 131921 to 132521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,298 DEBUG Processing 10/704 atomic regions from SNP 2709 to 3310 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,308 DEBUG Processing 293/720 atomic regions from SNP 87855 to 88455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,410 DEBUG Processing 441/657 atomic regions from SNP 132221 to 132821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,533 DEBUG Processing 294/720 atomic regions from SNP 88155 to 88755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,536 DEBUG Processing 11/704 atomic regions from SNP 3010 to 3611 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,621 DEBUG Processing 442/657 atomic regions from SNP 132521 to 133121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,758 DEBUG Processing 295/720 atomic regions from SNP 88455 to 89055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:08,780 DEBUG Processing 12/704 atomic regions from SNP 3311 to 3912 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:08,835 DEBUG Processing 443/657 atomic regions from SNP 132821 to 133421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:08,982 DEBUG Processing 296/720 atomic regions from SNP 88755 to 89355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,031 DEBUG Processing 13/704 atomic regions from SNP 3612 to 4213 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,051 DEBUG Processing 444/657 atomic regions from SNP 133121 to 133721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,203 DEBUG Processing 297/720 atomic regions from SNP 89055 to 89655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,262 DEBUG Processing 14/704 atomic regions from SNP 3913 to 4514 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,270 DEBUG Processing 445/657 atomic regions from SNP 133421 to 134021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,440 DEBUG Processing 298/720 atomic regions from SNP 89355 to 89955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,495 DEBUG Processing 446/657 atomic regions from SNP 133721 to 134321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,498 DEBUG Processing 15/704 atomic regions from SNP 4214 to 4815 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,665 DEBUG Processing 299/720 atomic regions from SNP 89655 to 90255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,714 DEBUG Processing 447/657 atomic regions from SNP 134021 to 134621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,731 DEBUG Processing 16/704 atomic regions from SNP 4515 to 5116 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:09,891 DEBUG Processing 300/720 atomic regions from SNP 89955 to 90555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:09,929 DEBUG Processing 448/657 atomic regions from SNP 134321 to 134921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:09,963 DEBUG Processing 17/704 atomic regions from SNP 4816 to 5417 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,139 DEBUG Processing 301/720 atomic regions from SNP 90255 to 90855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,152 DEBUG Processing 449/657 atomic regions from SNP 134621 to 135221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,225 DEBUG Processing 18/704 atomic regions from SNP 5117 to 5718 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,366 DEBUG Processing 450/657 atomic regions from SNP 134921 to 135521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,396 DEBUG Processing 302/720 atomic regions from SNP 90555 to 91155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,460 DEBUG Processing 19/704 atomic regions from SNP 5418 to 6019 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,581 DEBUG Processing 451/657 atomic regions from SNP 135221 to 135821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,645 DEBUG Processing 303/720 atomic regions from SNP 90855 to 91455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,698 DEBUG Processing 20/704 atomic regions from SNP 5719 to 6320 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:10,791 DEBUG Processing 452/657 atomic regions from SNP 135521 to 136121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:10,875 DEBUG Processing 304/720 atomic regions from SNP 91155 to 91755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:10,946 DEBUG Processing 21/704 atomic regions from SNP 6020 to 6621 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,003 DEBUG Processing 453/657 atomic regions from SNP 135821 to 136421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,108 DEBUG Processing 305/720 atomic regions from SNP 91455 to 92055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,201 DEBUG Processing 22/704 atomic regions from SNP 6321 to 6922 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,211 DEBUG Processing 454/657 atomic regions from SNP 136121 to 136721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,342 DEBUG Processing 306/720 atomic regions from SNP 91755 to 92355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,423 DEBUG Processing 455/657 atomic regions from SNP 136421 to 137021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,426 DEBUG Processing 23/704 atomic regions from SNP 6622 to 7223 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,577 DEBUG Processing 307/720 atomic regions from SNP 92055 to 92655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,636 DEBUG Processing 456/657 atomic regions from SNP 136721 to 137321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,645 DEBUG Processing 24/704 atomic regions from SNP 6923 to 7524 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:11,813 DEBUG Processing 308/720 atomic regions from SNP 92355 to 92955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:11,856 DEBUG Processing 457/657 atomic regions from SNP 137021 to 137621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:11,871 DEBUG Processing 25/704 atomic regions from SNP 7224 to 7825 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,051 DEBUG Processing 309/720 atomic regions from SNP 92655 to 93255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,077 DEBUG Processing 458/657 atomic regions from SNP 137321 to 137921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,100 DEBUG Processing 26/704 atomic regions from SNP 7525 to 8126 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,282 DEBUG Processing 310/720 atomic regions from SNP 92955 to 93555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,290 DEBUG Processing 459/657 atomic regions from SNP 137621 to 138221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,323 DEBUG Processing 27/704 atomic regions from SNP 7826 to 8427 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,502 DEBUG Processing 460/657 atomic regions from SNP 137921 to 138521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,513 DEBUG Processing 311/720 atomic regions from SNP 93255 to 93855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,545 DEBUG Processing 28/704 atomic regions from SNP 8127 to 8728 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,711 DEBUG Processing 461/657 atomic regions from SNP 138221 to 138821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,744 DEBUG Processing 312/720 atomic regions from SNP 93555 to 94155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,764 DEBUG Processing 29/704 atomic regions from SNP 8428 to 9029 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:12,924 DEBUG Processing 462/657 atomic regions from SNP 138521 to 139121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:12,976 DEBUG Processing 313/720 atomic regions from SNP 93855 to 94455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:12,982 DEBUG Processing 30/704 atomic regions from SNP 8729 to 9330 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,135 DEBUG Processing 463/657 atomic regions from SNP 138821 to 139421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,202 DEBUG Processing 31/704 atomic regions from SNP 9030 to 9631 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,209 DEBUG Processing 314/720 atomic regions from SNP 94155 to 94755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,350 DEBUG Processing 464/657 atomic regions from SNP 139121 to 139721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,424 DEBUG Processing 32/704 atomic regions from SNP 9331 to 9932 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,450 DEBUG Processing 315/720 atomic regions from SNP 94455 to 95055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,565 DEBUG Processing 465/657 atomic regions from SNP 139421 to 140021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,639 DEBUG Processing 33/704 atomic regions from SNP 9632 to 10233 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,710 DEBUG Processing 316/720 atomic regions from SNP 94755 to 95355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,779 DEBUG Processing 466/657 atomic regions from SNP 139721 to 140321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:13,851 DEBUG Processing 34/704 atomic regions from SNP 9933 to 10534 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:13,974 DEBUG Processing 317/720 atomic regions from SNP 95055 to 95655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:13,997 DEBUG Processing 467/657 atomic regions from SNP 140021 to 140621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,066 DEBUG Processing 35/704 atomic regions from SNP 10234 to 10835 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,211 DEBUG Processing 468/657 atomic regions from SNP 140321 to 140921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,232 DEBUG Processing 318/720 atomic regions from SNP 95355 to 95955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,284 DEBUG Processing 36/704 atomic regions from SNP 10535 to 11136 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,428 DEBUG Processing 469/657 atomic regions from SNP 140621 to 141221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,475 DEBUG Processing 319/720 atomic regions from SNP 95655 to 96255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,503 DEBUG Processing 37/704 atomic regions from SNP 10836 to 11437 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,641 DEBUG Processing 470/657 atomic regions from SNP 140921 to 141521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,721 DEBUG Processing 38/704 atomic regions from SNP 11137 to 11738 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:14,735 DEBUG Processing 320/720 atomic regions from SNP 95955 to 96555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:14,853 DEBUG Processing 471/657 atomic regions from SNP 141221 to 141821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:14,956 DEBUG Processing 39/704 atomic regions from SNP 11438 to 12039 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,017 DEBUG Processing 321/720 atomic regions from SNP 96255 to 96855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,081 DEBUG Processing 472/657 atomic regions from SNP 141521 to 142121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,174 DEBUG Processing 40/704 atomic regions from SNP 11739 to 12340 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,284 DEBUG Processing 322/720 atomic regions from SNP 96555 to 97155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,304 DEBUG Processing 473/657 atomic regions from SNP 141821 to 142421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,399 DEBUG Processing 41/704 atomic regions from SNP 12040 to 12641 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,521 DEBUG Processing 474/657 atomic regions from SNP 142121 to 142721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,528 DEBUG Processing 323/720 atomic regions from SNP 96855 to 97455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,614 DEBUG Processing 42/704 atomic regions from SNP 12341 to 12942 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,756 DEBUG Processing 475/657 atomic regions from SNP 142421 to 143021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:15,772 DEBUG Processing 324/720 atomic regions from SNP 97155 to 97755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:15,833 DEBUG Processing 43/704 atomic regions from SNP 12642 to 13243 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:15,976 DEBUG Processing 476/657 atomic regions from SNP 142721 to 143321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,035 DEBUG Processing 325/720 atomic regions from SNP 97455 to 98055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,051 DEBUG Processing 44/704 atomic regions from SNP 12943 to 13544 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,192 DEBUG Processing 477/657 atomic regions from SNP 143021 to 143621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,267 DEBUG Processing 45/704 atomic regions from SNP 13244 to 13845 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,284 DEBUG Processing 326/720 atomic regions from SNP 97755 to 98355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,406 DEBUG Processing 478/657 atomic regions from SNP 143321 to 143921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,483 DEBUG Processing 46/704 atomic regions from SNP 13545 to 14146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,539 DEBUG Processing 327/720 atomic regions from SNP 98055 to 98655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,623 DEBUG Processing 479/657 atomic regions from SNP 143621 to 144221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,708 DEBUG Processing 47/704 atomic regions from SNP 13846 to 14447 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:16,788 DEBUG Processing 328/720 atomic regions from SNP 98355 to 98955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:16,836 DEBUG Processing 480/657 atomic regions from SNP 143921 to 144521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:16,933 DEBUG Processing 48/704 atomic regions from SNP 14147 to 14748 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,031 DEBUG Processing 329/720 atomic regions from SNP 98655 to 99255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,051 DEBUG Processing 481/657 atomic regions from SNP 144221 to 144821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,158 DEBUG Processing 49/704 atomic regions from SNP 14448 to 15049 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,260 DEBUG Processing 482/657 atomic regions from SNP 144521 to 145121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,262 DEBUG Processing 330/720 atomic regions from SNP 98955 to 99555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,385 DEBUG Processing 50/704 atomic regions from SNP 14749 to 15350 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,471 DEBUG Processing 483/657 atomic regions from SNP 144821 to 145421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,515 DEBUG Processing 331/720 atomic regions from SNP 99255 to 99855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,613 DEBUG Processing 51/704 atomic regions from SNP 15050 to 15651 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,684 DEBUG Processing 484/657 atomic regions from SNP 145121 to 145721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:17,756 DEBUG Processing 332/720 atomic regions from SNP 99555 to 100155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:17,842 DEBUG Processing 52/704 atomic regions from SNP 15351 to 15952 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:17,896 DEBUG Processing 485/657 atomic regions from SNP 145421 to 146021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,014 DEBUG Processing 333/720 atomic regions from SNP 99855 to 100455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,069 DEBUG Processing 53/704 atomic regions from SNP 15652 to 16253 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,116 DEBUG Processing 486/657 atomic regions from SNP 145721 to 146321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,280 DEBUG Processing 334/720 atomic regions from SNP 100155 to 100755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,301 DEBUG Processing 54/704 atomic regions from SNP 15953 to 16554 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,336 DEBUG Processing 487/657 atomic regions from SNP 146021 to 146621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,522 DEBUG Processing 335/720 atomic regions from SNP 100455 to 101055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,527 DEBUG Processing 55/704 atomic regions from SNP 16254 to 16855 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,560 DEBUG Processing 488/657 atomic regions from SNP 146321 to 146921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,750 DEBUG Processing 56/704 atomic regions from SNP 16555 to 17156 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,762 DEBUG Processing 336/720 atomic regions from SNP 100755 to 101355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:18,780 DEBUG Processing 489/657 atomic regions from SNP 146621 to 147221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:18,974 DEBUG Processing 57/704 atomic regions from SNP 16856 to 17457 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:18,996 DEBUG Processing 490/657 atomic regions from SNP 146921 to 147521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,000 DEBUG Processing 337/720 atomic regions from SNP 101055 to 101655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,194 DEBUG Processing 58/704 atomic regions from SNP 17157 to 17758 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,210 DEBUG Processing 491/657 atomic regions from SNP 147221 to 147821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,233 DEBUG Processing 338/720 atomic regions from SNP 101355 to 101955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,412 DEBUG Processing 59/704 atomic regions from SNP 17458 to 18059 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,424 DEBUG Processing 492/657 atomic regions from SNP 147521 to 148121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,468 DEBUG Processing 339/720 atomic regions from SNP 101655 to 102255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,633 DEBUG Processing 60/704 atomic regions from SNP 17759 to 18360 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,637 DEBUG Processing 493/657 atomic regions from SNP 147821 to 148421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,701 DEBUG Processing 340/720 atomic regions from SNP 101955 to 102555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:19,852 DEBUG Processing 494/657 atomic regions from SNP 148121 to 148721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:19,874 DEBUG Processing 61/704 atomic regions from SNP 18060 to 18661 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:19,936 DEBUG Processing 341/720 atomic regions from SNP 102255 to 102855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,067 DEBUG Processing 495/657 atomic regions from SNP 148421 to 149021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,102 DEBUG Processing 62/704 atomic regions from SNP 18361 to 18962 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,175 DEBUG Processing 342/720 atomic regions from SNP 102555 to 103155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,292 DEBUG Processing 496/657 atomic regions from SNP 148721 to 149321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,330 DEBUG Processing 63/704 atomic regions from SNP 18662 to 19263 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,410 DEBUG Processing 343/720 atomic regions from SNP 102855 to 103455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,514 DEBUG Processing 497/657 atomic regions from SNP 149021 to 149621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,554 DEBUG Processing 64/704 atomic regions from SNP 18963 to 19564 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,655 DEBUG Processing 344/720 atomic regions from SNP 103155 to 103755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,733 DEBUG Processing 498/657 atomic regions from SNP 149321 to 149921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:20,782 DEBUG Processing 65/704 atomic regions from SNP 19264 to 19865 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:20,910 DEBUG Processing 345/720 atomic regions from SNP 103455 to 104055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:20,958 DEBUG Processing 499/657 atomic regions from SNP 149621 to 150221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,010 DEBUG Processing 66/704 atomic regions from SNP 19565 to 20166 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,154 DEBUG Processing 346/720 atomic regions from SNP 103755 to 104355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,180 DEBUG Processing 500/657 atomic regions from SNP 149921 to 150521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,241 DEBUG Processing 67/704 atomic regions from SNP 19866 to 20467 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,395 DEBUG Processing 347/720 atomic regions from SNP 104055 to 104655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,403 DEBUG Processing 501/657 atomic regions from SNP 150221 to 150821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,469 DEBUG Processing 68/704 atomic regions from SNP 20167 to 20768 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,628 DEBUG Processing 502/657 atomic regions from SNP 150521 to 151121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,661 DEBUG Processing 348/720 atomic regions from SNP 104355 to 104955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,699 DEBUG Processing 69/704 atomic regions from SNP 20468 to 21069 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:21,851 DEBUG Processing 503/657 atomic regions from SNP 150821 to 151421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:21,935 DEBUG Processing 349/720 atomic regions from SNP 104655 to 105255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:21,944 DEBUG Processing 70/704 atomic regions from SNP 20769 to 21370 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,066 DEBUG Processing 504/657 atomic regions from SNP 151121 to 151721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,170 DEBUG Processing 71/704 atomic regions from SNP 21070 to 21671 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,197 DEBUG Processing 350/720 atomic regions from SNP 104955 to 105555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,281 DEBUG Processing 505/657 atomic regions from SNP 151421 to 152021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,400 DEBUG Processing 72/704 atomic regions from SNP 21371 to 21972 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,466 DEBUG Processing 351/720 atomic regions from SNP 105255 to 105855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,500 DEBUG Processing 506/657 atomic regions from SNP 151721 to 152321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,638 DEBUG Processing 73/704 atomic regions from SNP 21672 to 22273 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,720 DEBUG Processing 352/720 atomic regions from SNP 105555 to 106155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:22,726 DEBUG Processing 507/657 atomic regions from SNP 152021 to 152621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,874 DEBUG Processing 74/704 atomic regions from SNP 21973 to 22574 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:22,952 DEBUG Processing 508/657 atomic regions from SNP 152321 to 152921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:22,985 DEBUG Processing 353/720 atomic regions from SNP 105855 to 106455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,110 DEBUG Processing 75/704 atomic regions from SNP 22274 to 22875 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,179 DEBUG Processing 509/657 atomic regions from SNP 152621 to 153221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,257 DEBUG Processing 354/720 atomic regions from SNP 106155 to 106755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,347 DEBUG Processing 76/704 atomic regions from SNP 22575 to 23176 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,403 DEBUG Processing 510/657 atomic regions from SNP 152921 to 153521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,518 DEBUG Processing 355/720 atomic regions from SNP 106455 to 107055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,582 DEBUG Processing 77/704 atomic regions from SNP 22876 to 23477 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,627 DEBUG Processing 511/657 atomic regions from SNP 153221 to 153821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:23,769 DEBUG Processing 356/720 atomic regions from SNP 106755 to 107355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:23,833 DEBUG Processing 78/704 atomic regions from SNP 23177 to 23778 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:23,853 DEBUG Processing 512/657 atomic regions from SNP 153521 to 154121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,009 DEBUG Processing 357/720 atomic regions from SNP 107055 to 107655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,070 DEBUG Processing 79/704 atomic regions from SNP 23478 to 24079 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,078 DEBUG Processing 513/657 atomic regions from SNP 153821 to 154421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,253 DEBUG Processing 358/720 atomic regions from SNP 107355 to 107955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,305 DEBUG Processing 80/704 atomic regions from SNP 23779 to 24380 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,307 DEBUG Processing 514/657 atomic regions from SNP 154121 to 154721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,513 DEBUG Processing 359/720 atomic regions from SNP 107655 to 108255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,533 DEBUG Processing 515/657 atomic regions from SNP 154421 to 155021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,538 DEBUG Processing 81/704 atomic regions from SNP 24080 to 24681 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,758 DEBUG Processing 516/657 atomic regions from SNP 154721 to 155321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,769 DEBUG Processing 82/704 atomic regions from SNP 24381 to 24982 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:24,775 DEBUG Processing 360/720 atomic regions from SNP 107955 to 108555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:24,982 DEBUG Processing 517/657 atomic regions from SNP 155021 to 155621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:24,999 DEBUG Processing 83/704 atomic regions from SNP 24682 to 25283 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,048 DEBUG Processing 361/720 atomic regions from SNP 108255 to 108855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,208 DEBUG Processing 518/657 atomic regions from SNP 155321 to 155921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,230 DEBUG Processing 84/704 atomic regions from SNP 24983 to 25584 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,332 DEBUG Processing 362/720 atomic regions from SNP 108555 to 109155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,437 DEBUG Processing 519/657 atomic regions from SNP 155621 to 156221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,465 DEBUG Processing 85/704 atomic regions from SNP 25284 to 25885 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,596 DEBUG Processing 363/720 atomic regions from SNP 108855 to 109455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,667 DEBUG Processing 520/657 atomic regions from SNP 155921 to 156521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,698 DEBUG Processing 86/704 atomic regions from SNP 25585 to 26186 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:25,860 DEBUG Processing 364/720 atomic regions from SNP 109155 to 109755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:25,903 DEBUG Processing 521/657 atomic regions from SNP 156221 to 156821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:25,938 DEBUG Processing 87/704 atomic regions from SNP 25886 to 26487 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,135 DEBUG Processing 365/720 atomic regions from SNP 109455 to 110055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,147 DEBUG Processing 522/657 atomic regions from SNP 156521 to 157121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,189 DEBUG Processing 88/704 atomic regions from SNP 26187 to 26788 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,375 DEBUG Processing 523/657 atomic regions from SNP 156821 to 157421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,392 DEBUG Processing 366/720 atomic regions from SNP 109755 to 110355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,422 DEBUG Processing 89/704 atomic regions from SNP 26488 to 27089 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,600 DEBUG Processing 524/657 atomic regions from SNP 157121 to 157721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,653 DEBUG Processing 367/720 atomic regions from SNP 110055 to 110655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:26,653 DEBUG Processing 90/704 atomic regions from SNP 26789 to 27390 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,823 DEBUG Processing 525/657 atomic regions from SNP 157421 to 158021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:26,888 DEBUG Processing 91/704 atomic regions from SNP 27090 to 27691 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:26,925 DEBUG Processing 368/720 atomic regions from SNP 110355 to 110955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,047 DEBUG Processing 526/657 atomic regions from SNP 157721 to 158321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,118 DEBUG Processing 92/704 atomic regions from SNP 27391 to 27992 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,205 DEBUG Processing 369/720 atomic regions from SNP 110655 to 111255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,275 DEBUG Processing 527/657 atomic regions from SNP 158021 to 158621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,343 DEBUG Processing 93/704 atomic regions from SNP 27692 to 28293 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,471 DEBUG Processing 370/720 atomic regions from SNP 110955 to 111555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,505 DEBUG Processing 528/657 atomic regions from SNP 158321 to 158921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,568 DEBUG Processing 94/704 atomic regions from SNP 27993 to 28594 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,738 DEBUG Processing 529/657 atomic regions from SNP 158621 to 159221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:27,747 DEBUG Processing 371/720 atomic regions from SNP 111255 to 111855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:27,799 DEBUG Processing 95/704 atomic regions from SNP 28294 to 28895 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:27,977 DEBUG Processing 530/657 atomic regions from SNP 158921 to 159521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,014 DEBUG Processing 372/720 atomic regions from SNP 111555 to 112155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,040 DEBUG Processing 96/704 atomic regions from SNP 28595 to 29196 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,218 DEBUG Processing 531/657 atomic regions from SNP 159221 to 159821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,290 DEBUG Processing 373/720 atomic regions from SNP 111855 to 112455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,294 DEBUG Processing 97/704 atomic regions from SNP 28896 to 29497 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,445 DEBUG Processing 532/657 atomic regions from SNP 159521 to 160121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,537 DEBUG Processing 98/704 atomic regions from SNP 29197 to 29798 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,554 DEBUG Processing 374/720 atomic regions from SNP 112155 to 112755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,669 DEBUG Processing 533/657 atomic regions from SNP 159821 to 160421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:28,791 DEBUG Processing 99/704 atomic regions from SNP 29498 to 30099 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:28,817 DEBUG Processing 375/720 atomic regions from SNP 112455 to 113055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:28,894 DEBUG Processing 534/657 atomic regions from SNP 160121 to 160721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,036 DEBUG Processing 100/704 atomic regions from SNP 29799 to 30400 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,075 DEBUG Processing 376/720 atomic regions from SNP 112755 to 113355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,122 DEBUG Processing 535/657 atomic regions from SNP 160421 to 161021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,218 DEBUG Segmenting atomic regions: 2025-01-31 09:54:29,271 DEBUG Processing 101/704 atomic regions from SNP 30100 to 30701 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,313 DEBUG Processing 1/675 atomic regions from SNP 0 to 601 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,327 DEBUG Processing 377/720 atomic regions from SNP 113055 to 113655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,370 DEBUG Processing 536/657 atomic regions from SNP 160721 to 161321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,506 DEBUG Processing 102/704 atomic regions from SNP 30401 to 31002 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,545 DEBUG Processing 2/675 atomic regions from SNP 301 to 902 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,583 DEBUG Processing 378/720 atomic regions from SNP 113355 to 113955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,599 DEBUG Processing 537/657 atomic regions from SNP 161021 to 161621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,742 DEBUG Processing 103/704 atomic regions from SNP 30702 to 31303 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:29,776 DEBUG Processing 3/675 atomic regions from SNP 602 to 1203 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:29,821 DEBUG Processing 379/720 atomic regions from SNP 113655 to 114255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:29,838 DEBUG Processing 538/657 atomic regions from SNP 161321 to 161921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:29,977 DEBUG Processing 104/704 atomic regions from SNP 31003 to 31604 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,006 DEBUG Processing 4/675 atomic regions from SNP 903 to 1504 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,064 DEBUG Processing 539/657 atomic regions from SNP 161621 to 162221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,086 DEBUG Processing 380/720 atomic regions from SNP 113955 to 114555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,217 DEBUG Processing 105/704 atomic regions from SNP 31304 to 31905 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,245 DEBUG Processing 5/675 atomic regions from SNP 1204 to 1805 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,299 DEBUG Processing 540/657 atomic regions from SNP 161921 to 162521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,347 DEBUG Processing 381/720 atomic regions from SNP 114255 to 114855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,451 DEBUG Processing 106/704 atomic regions from SNP 31605 to 32206 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,477 DEBUG Processing 6/675 atomic regions from SNP 1505 to 2106 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,539 DEBUG Processing 541/657 atomic regions from SNP 162221 to 162821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,585 DEBUG Processing 382/720 atomic regions from SNP 114555 to 115155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,684 DEBUG Processing 107/704 atomic regions from SNP 31906 to 32507 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,708 DEBUG Processing 7/675 atomic regions from SNP 1806 to 2407 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:30,775 DEBUG Processing 542/657 atomic regions from SNP 162521 to 163121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:30,827 DEBUG Processing 383/720 atomic regions from SNP 114855 to 115455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:30,916 DEBUG Processing 108/704 atomic regions from SNP 32207 to 32808 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:30,940 DEBUG Processing 8/675 atomic regions from SNP 2107 to 2708 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,009 DEBUG Processing 543/657 atomic regions from SNP 162821 to 163421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,064 DEBUG Processing 384/720 atomic regions from SNP 115155 to 115755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,138 DEBUG Processing 109/704 atomic regions from SNP 32508 to 33109 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,163 DEBUG Processing 9/675 atomic regions from SNP 2408 to 3009 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,243 DEBUG Processing 544/657 atomic regions from SNP 163121 to 163721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,304 DEBUG Processing 385/720 atomic regions from SNP 115455 to 116055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,356 DEBUG Processing 110/704 atomic regions from SNP 32809 to 33410 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,380 DEBUG Processing 10/675 atomic regions from SNP 2709 to 3310 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,478 DEBUG Processing 545/657 atomic regions from SNP 163421 to 164021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,542 DEBUG Processing 386/720 atomic regions from SNP 115755 to 116355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,579 DEBUG Processing 111/704 atomic regions from SNP 33110 to 33711 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,595 DEBUG Processing 11/675 atomic regions from SNP 3010 to 3611 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,722 DEBUG Processing 546/657 atomic regions from SNP 163721 to 164321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:31,790 DEBUG Processing 387/720 atomic regions from SNP 116055 to 116655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:31,820 DEBUG Processing 12/675 atomic regions from SNP 3311 to 3912 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:31,832 DEBUG Processing 112/704 atomic regions from SNP 33411 to 34012 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:31,965 DEBUG Processing 547/657 atomic regions from SNP 164021 to 164621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,031 DEBUG Processing 388/720 atomic regions from SNP 116355 to 116955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,051 DEBUG Processing 13/675 atomic regions from SNP 3612 to 4213 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,101 DEBUG Processing 113/704 atomic regions from SNP 33712 to 34313 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,192 DEBUG Processing 548/657 atomic regions from SNP 164321 to 164921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,275 DEBUG Processing 389/720 atomic regions from SNP 116655 to 117255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,284 DEBUG Processing 14/675 atomic regions from SNP 3913 to 4514 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,350 DEBUG Processing 114/704 atomic regions from SNP 34013 to 34614 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,415 DEBUG Processing 549/657 atomic regions from SNP 164621 to 165221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,517 DEBUG Processing 15/675 atomic regions from SNP 4214 to 4815 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,517 DEBUG Processing 390/720 atomic regions from SNP 116955 to 117555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,584 DEBUG Processing 115/704 atomic regions from SNP 34314 to 34915 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,644 DEBUG Processing 550/657 atomic regions from SNP 164921 to 165521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,746 DEBUG Processing 16/675 atomic regions from SNP 4515 to 5116 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,752 DEBUG Processing 391/720 atomic regions from SNP 117255 to 117855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:32,819 DEBUG Processing 116/704 atomic regions from SNP 34615 to 35216 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:32,862 DEBUG Processing 551/657 atomic regions from SNP 165221 to 165821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:32,979 DEBUG Processing 17/675 atomic regions from SNP 4816 to 5417 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:32,993 DEBUG Processing 392/720 atomic regions from SNP 117555 to 118155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,062 DEBUG Processing 117/704 atomic regions from SNP 34916 to 35517 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,090 DEBUG Processing 552/657 atomic regions from SNP 165521 to 166121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,204 DEBUG Processing 18/675 atomic regions from SNP 5117 to 5718 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,231 DEBUG Processing 393/720 atomic regions from SNP 117855 to 118455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,303 DEBUG Processing 118/704 atomic regions from SNP 35217 to 35818 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,321 DEBUG Processing 553/657 atomic regions from SNP 165821 to 166421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,427 DEBUG Processing 19/675 atomic regions from SNP 5418 to 6019 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,470 DEBUG Processing 394/720 atomic regions from SNP 118155 to 118755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,543 DEBUG Processing 119/704 atomic regions from SNP 35518 to 36119 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,554 DEBUG Processing 554/657 atomic regions from SNP 166121 to 166721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,663 DEBUG Processing 20/675 atomic regions from SNP 5719 to 6320 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,727 DEBUG Processing 395/720 atomic regions from SNP 118455 to 119055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:33,786 DEBUG Processing 120/704 atomic regions from SNP 35819 to 36420 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:33,787 DEBUG Processing 555/657 atomic regions from SNP 166421 to 167021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:33,883 DEBUG Processing 21/675 atomic regions from SNP 6020 to 6621 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:33,969 DEBUG Processing 396/720 atomic regions from SNP 118755 to 119355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,023 DEBUG Processing 556/657 atomic regions from SNP 166721 to 167321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,029 DEBUG Processing 121/704 atomic regions from SNP 36120 to 36721 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,105 DEBUG Processing 22/675 atomic regions from SNP 6321 to 6922 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,213 DEBUG Processing 397/720 atomic regions from SNP 119055 to 119655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,258 DEBUG Processing 557/657 atomic regions from SNP 167021 to 167621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,272 DEBUG Processing 122/704 atomic regions from SNP 36421 to 37022 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,333 DEBUG Processing 23/675 atomic regions from SNP 6622 to 7223 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,465 DEBUG Processing 398/720 atomic regions from SNP 119355 to 119955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,506 DEBUG Processing 558/657 atomic regions from SNP 167321 to 167921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,526 DEBUG Processing 123/704 atomic regions from SNP 36722 to 37323 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,566 DEBUG Processing 24/675 atomic regions from SNP 6923 to 7524 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,711 DEBUG Processing 399/720 atomic regions from SNP 119655 to 120255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,742 DEBUG Processing 559/657 atomic regions from SNP 167621 to 168221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:34,770 DEBUG Processing 124/704 atomic regions from SNP 37023 to 37624 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:34,795 DEBUG Processing 25/675 atomic regions from SNP 7224 to 7825 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:34,951 DEBUG Processing 400/720 atomic regions from SNP 119955 to 120555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:34,975 DEBUG Processing 560/657 atomic regions from SNP 167921 to 168521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,011 DEBUG Processing 125/704 atomic regions from SNP 37324 to 37925 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,029 DEBUG Processing 26/675 atomic regions from SNP 7525 to 8126 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,195 DEBUG Processing 401/720 atomic regions from SNP 120255 to 120855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,210 DEBUG Processing 561/657 atomic regions from SNP 168221 to 168821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,254 DEBUG Processing 126/704 atomic regions from SNP 37625 to 38226 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,275 DEBUG Processing 27/675 atomic regions from SNP 7826 to 8427 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,451 DEBUG Processing 402/720 atomic regions from SNP 120555 to 121155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,456 DEBUG Processing 562/657 atomic regions from SNP 168521 to 169121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,513 DEBUG Processing 127/704 atomic regions from SNP 37926 to 38527 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,525 DEBUG Processing 28/675 atomic regions from SNP 8127 to 8728 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,678 DEBUG Processing 563/657 atomic regions from SNP 168821 to 169421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,701 DEBUG Processing 403/720 atomic regions from SNP 120855 to 121455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,756 DEBUG Processing 128/704 atomic regions from SNP 38227 to 38828 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,762 DEBUG Processing 29/675 atomic regions from SNP 8428 to 9029 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:35,902 DEBUG Processing 564/657 atomic regions from SNP 169121 to 169721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:35,957 DEBUG Processing 404/720 atomic regions from SNP 121155 to 121755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:35,998 DEBUG Processing 129/704 atomic regions from SNP 38528 to 39129 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:35,998 DEBUG Processing 30/675 atomic regions from SNP 8729 to 9330 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,125 DEBUG Processing 565/657 atomic regions from SNP 169421 to 170021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,207 DEBUG Processing 405/720 atomic regions from SNP 121455 to 122055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,236 DEBUG Processing 31/675 atomic regions from SNP 9030 to 9631 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,242 DEBUG Processing 130/704 atomic regions from SNP 38829 to 39430 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,347 DEBUG Processing 566/657 atomic regions from SNP 169721 to 170321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,447 DEBUG Processing 406/720 atomic regions from SNP 121755 to 122355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,465 DEBUG Processing 32/675 atomic regions from SNP 9331 to 9932 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,480 DEBUG Processing 131/704 atomic regions from SNP 39130 to 39731 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,572 DEBUG Processing 567/657 atomic regions from SNP 170021 to 170621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,688 DEBUG Processing 407/720 atomic regions from SNP 122055 to 122655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,689 DEBUG Processing 33/675 atomic regions from SNP 9632 to 10233 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,714 DEBUG Processing 132/704 atomic regions from SNP 39431 to 40032 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:36,805 DEBUG Processing 568/657 atomic regions from SNP 170321 to 170921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:36,915 DEBUG Processing 34/675 atomic regions from SNP 9933 to 10534 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:36,935 DEBUG Processing 408/720 atomic regions from SNP 122355 to 122955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:36,946 DEBUG Processing 133/704 atomic regions from SNP 39732 to 40333 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,039 DEBUG Processing 569/657 atomic regions from SNP 170621 to 171221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,129 DEBUG Processing 35/675 atomic regions from SNP 10234 to 10835 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,173 DEBUG Processing 134/704 atomic regions from SNP 40033 to 40634 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,199 DEBUG Processing 409/720 atomic regions from SNP 122655 to 123255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,270 DEBUG Processing 570/657 atomic regions from SNP 170921 to 171521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,348 DEBUG Processing 36/675 atomic regions from SNP 10535 to 11136 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,404 DEBUG Processing 135/704 atomic regions from SNP 40334 to 40935 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,438 DEBUG Processing 410/720 atomic regions from SNP 122955 to 123555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,503 DEBUG Processing 571/657 atomic regions from SNP 171221 to 171821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,567 DEBUG Processing 37/675 atomic regions from SNP 10836 to 11437 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,627 DEBUG Processing 136/704 atomic regions from SNP 40635 to 41236 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,678 DEBUG Processing 411/720 atomic regions from SNP 123255 to 123855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,737 DEBUG Processing 572/657 atomic regions from SNP 171521 to 172121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:37,793 DEBUG Processing 38/675 atomic regions from SNP 11137 to 11738 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:37,858 DEBUG Processing 137/704 atomic regions from SNP 40936 to 41537 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:37,942 DEBUG Processing 412/720 atomic regions from SNP 123555 to 124155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:37,976 DEBUG Processing 573/657 atomic regions from SNP 171821 to 172421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,023 DEBUG Processing 39/675 atomic regions from SNP 11438 to 12039 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,088 DEBUG Processing 138/704 atomic regions from SNP 41237 to 41838 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,198 DEBUG Processing 413/720 atomic regions from SNP 123855 to 124455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,214 DEBUG Processing 574/657 atomic regions from SNP 172121 to 172721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,257 DEBUG Processing 40/675 atomic regions from SNP 11739 to 12340 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,318 DEBUG Processing 139/704 atomic regions from SNP 41538 to 42139 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,337 DEBUG chr12: Estimating proportion of background vs signal 2025-01-31 09:54:38,449 DEBUG Processing 575/657 atomic regions from SNP 172421 to 173021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,475 DEBUG Processing 414/720 atomic regions from SNP 124155 to 124755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,497 DEBUG Processing 41/675 atomic regions from SNP 12040 to 12641 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,559 DEBUG Processing 140/704 atomic regions from SNP 41839 to 42440 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,684 DEBUG Processing 576/657 atomic regions from SNP 172721 to 173321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,731 DEBUG Processing 42/675 atomic regions from SNP 12341 to 12942 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:38,747 DEBUG Processing 415/720 atomic regions from SNP 124455 to 125055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:38,794 DEBUG Processing 141/704 atomic regions from SNP 42140 to 42741 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:38,919 DEBUG Processing 577/657 atomic regions from SNP 173021 to 173621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:38,965 DEBUG Processing 43/675 atomic regions from SNP 12642 to 13243 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,011 DEBUG Processing 416/720 atomic regions from SNP 124755 to 125355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,039 DEBUG Processing 142/704 atomic regions from SNP 42441 to 43042 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,150 DEBUG Processing 578/657 atomic regions from SNP 173321 to 173921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,210 DEBUG Processing 44/675 atomic regions from SNP 12943 to 13544 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,259 DEBUG Processing 417/720 atomic regions from SNP 125055 to 125655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,283 DEBUG Processing 143/704 atomic regions from SNP 42742 to 43343 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,377 DEBUG Processing 579/657 atomic regions from SNP 173621 to 174221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,440 DEBUG Processing 45/675 atomic regions from SNP 13244 to 13845 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,511 DEBUG Processing 418/720 atomic regions from SNP 125355 to 125955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,519 DEBUG Processing 144/704 atomic regions from SNP 43043 to 43644 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,609 DEBUG Processing 580/657 atomic regions from SNP 173921 to 174521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,668 DEBUG Processing 46/675 atomic regions from SNP 13545 to 14146 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,757 DEBUG Processing 145/704 atomic regions from SNP 43344 to 43945 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:39,759 DEBUG Processing 419/720 atomic regions from SNP 125655 to 126255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:39,842 DEBUG Processing 581/657 atomic regions from SNP 174221 to 174821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:39,896 DEBUG Processing 47/675 atomic regions from SNP 13846 to 14447 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:39,995 DEBUG Processing 146/704 atomic regions from SNP 43645 to 44246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,007 DEBUG Processing 420/720 atomic regions from SNP 125955 to 126555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,078 DEBUG Processing 582/657 atomic regions from SNP 174521 to 175121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,120 DEBUG Processing 48/675 atomic regions from SNP 14147 to 14748 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,234 DEBUG Processing 147/704 atomic regions from SNP 43946 to 44546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,258 DEBUG Processing 421/720 atomic regions from SNP 126255 to 126855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,315 DEBUG Processing 583/657 atomic regions from SNP 174821 to 175421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,345 DEBUG Processing 49/675 atomic regions from SNP 14448 to 15049 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,477 DEBUG Processing 148/704 atomic regions from SNP 44246 to 44846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,514 DEBUG Processing 422/720 atomic regions from SNP 126555 to 127155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,555 DEBUG Processing 584/657 atomic regions from SNP 175121 to 175721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,582 DEBUG Processing 50/675 atomic regions from SNP 14749 to 15350 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,725 DEBUG Processing 149/704 atomic regions from SNP 44546 to 45146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:40,763 DEBUG Processing 423/720 atomic regions from SNP 126855 to 127455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:40,803 DEBUG Processing 585/657 atomic regions from SNP 175421 to 176021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:40,818 DEBUG Processing 51/675 atomic regions from SNP 15050 to 15651 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:40,995 DEBUG Processing 150/704 atomic regions from SNP 44846 to 45446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,022 DEBUG Processing 424/720 atomic regions from SNP 127155 to 127755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,046 DEBUG Processing 586/657 atomic regions from SNP 175721 to 176321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,067 DEBUG Processing 52/675 atomic regions from SNP 15351 to 15952 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,237 DEBUG Processing 151/704 atomic regions from SNP 45146 to 45746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,261 DEBUG Processing 425/720 atomic regions from SNP 127455 to 128055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,291 DEBUG Processing 587/657 atomic regions from SNP 176021 to 176621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,305 DEBUG Processing 53/675 atomic regions from SNP 15652 to 16253 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,479 DEBUG Processing 152/704 atomic regions from SNP 45446 to 46046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,505 DEBUG Processing 426/720 atomic regions from SNP 127755 to 128355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,533 DEBUG Processing 588/657 atomic regions from SNP 176321 to 176921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,542 DEBUG Processing 54/675 atomic regions from SNP 15953 to 16554 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,721 DEBUG Processing 153/704 atomic regions from SNP 45746 to 46346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,745 DEBUG Processing 427/720 atomic regions from SNP 128055 to 128655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:41,776 DEBUG Processing 589/657 atomic regions from SNP 176621 to 177221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:41,781 DEBUG Processing 55/675 atomic regions from SNP 16254 to 16855 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:41,963 DEBUG Processing 154/704 atomic regions from SNP 46046 to 46646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:41,984 DEBUG Processing 428/720 atomic regions from SNP 128355 to 128955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,023 DEBUG Processing 56/675 atomic regions from SNP 16555 to 17156 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,026 DEBUG Processing 590/657 atomic regions from SNP 176921 to 177521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,200 DEBUG Processing 155/704 atomic regions from SNP 46346 to 46946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,231 DEBUG Processing 429/720 atomic regions from SNP 128655 to 129255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,264 DEBUG Processing 57/675 atomic regions from SNP 16856 to 17457 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,270 DEBUG Processing 591/657 atomic regions from SNP 177221 to 177821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,431 DEBUG Processing 156/704 atomic regions from SNP 46646 to 47246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,476 DEBUG Processing 430/720 atomic regions from SNP 128955 to 129555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,501 DEBUG Processing 58/675 atomic regions from SNP 17157 to 17758 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,516 DEBUG Processing 592/657 atomic regions from SNP 177521 to 178121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,665 DEBUG Processing 157/704 atomic regions from SNP 46946 to 47546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,733 DEBUG Processing 431/720 atomic regions from SNP 129255 to 129855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:42,744 DEBUG Processing 59/675 atomic regions from SNP 17458 to 18059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:42,763 DEBUG Processing 593/657 atomic regions from SNP 177821 to 178421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:42,902 DEBUG Processing 158/704 atomic regions from SNP 47246 to 47846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:42,983 DEBUG Processing 60/675 atomic regions from SNP 17759 to 18360 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,005 DEBUG Processing 594/657 atomic regions from SNP 178121 to 178721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,006 DEBUG Processing 432/720 atomic regions from SNP 129555 to 130155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,139 DEBUG Processing 159/704 atomic regions from SNP 47546 to 48146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,232 DEBUG Processing 61/675 atomic regions from SNP 18060 to 18661 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,245 DEBUG Processing 595/657 atomic regions from SNP 178421 to 179021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,262 DEBUG Processing 433/720 atomic regions from SNP 129855 to 130455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,377 DEBUG Processing 160/704 atomic regions from SNP 47846 to 48446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,466 DEBUG Processing 62/675 atomic regions from SNP 18361 to 18962 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,483 DEBUG Processing 596/657 atomic regions from SNP 178721 to 179321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,505 DEBUG Processing 434/720 atomic regions from SNP 130155 to 130755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,613 DEBUG Processing 161/704 atomic regions from SNP 48146 to 48746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,696 DEBUG Processing 63/675 atomic regions from SNP 18662 to 19263 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,719 DEBUG Processing 597/657 atomic regions from SNP 179021 to 179621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,743 DEBUG Processing 435/720 atomic regions from SNP 130455 to 131055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:43,852 DEBUG Processing 162/704 atomic regions from SNP 48446 to 49046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:43,927 DEBUG Processing 64/675 atomic regions from SNP 18963 to 19564 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:43,953 DEBUG Processing 598/657 atomic regions from SNP 179321 to 179921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:43,975 DEBUG Processing 436/720 atomic regions from SNP 130755 to 131355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,107 DEBUG Processing 163/704 atomic regions from SNP 48746 to 49346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,159 DEBUG Processing 65/675 atomic regions from SNP 19264 to 19865 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,190 DEBUG Processing 599/657 atomic regions from SNP 179621 to 180221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,217 DEBUG Processing 437/720 atomic regions from SNP 131055 to 131655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,352 DEBUG Processing 164/704 atomic regions from SNP 49046 to 49646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,394 DEBUG Processing 66/675 atomic regions from SNP 19565 to 20166 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,431 DEBUG Processing 600/657 atomic regions from SNP 179921 to 180521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,463 DEBUG Processing 438/720 atomic regions from SNP 131355 to 131955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,627 DEBUG Processing 165/704 atomic regions from SNP 49346 to 49946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,635 DEBUG Processing 67/675 atomic regions from SNP 19866 to 20467 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,697 DEBUG Processing 601/657 atomic regions from SNP 180221 to 180821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,705 DEBUG Processing 439/720 atomic regions from SNP 131655 to 132255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:44,864 DEBUG Processing 68/675 atomic regions from SNP 20167 to 20768 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:44,896 DEBUG Processing 166/704 atomic regions from SNP 49646 to 50246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:44,936 DEBUG Processing 602/657 atomic regions from SNP 180521 to 181121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:44,949 DEBUG Processing 440/720 atomic regions from SNP 131955 to 132555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,097 DEBUG Processing 69/675 atomic regions from SNP 20468 to 21069 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,137 DEBUG Processing 167/704 atomic regions from SNP 49946 to 50546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,171 DEBUG Processing 603/657 atomic regions from SNP 180821 to 181421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,197 DEBUG Processing 441/720 atomic regions from SNP 132255 to 132855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,332 DEBUG Processing 70/675 atomic regions from SNP 20769 to 21370 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,379 DEBUG Processing 168/704 atomic regions from SNP 50246 to 50846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,402 DEBUG Processing 604/657 atomic regions from SNP 181121 to 181721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,440 DEBUG Processing 442/720 atomic regions from SNP 132555 to 133155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,562 DEBUG Processing 71/675 atomic regions from SNP 21070 to 21671 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,621 DEBUG Processing 169/704 atomic regions from SNP 50546 to 51146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,634 DEBUG Processing 605/657 atomic regions from SNP 181421 to 182021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,683 DEBUG Processing 443/720 atomic regions from SNP 132855 to 133455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:45,789 DEBUG Processing 72/675 atomic regions from SNP 21371 to 21972 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:45,856 DEBUG Processing 170/704 atomic regions from SNP 50846 to 51446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:45,858 DEBUG Processing 606/657 atomic regions from SNP 181721 to 182321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:45,927 DEBUG Processing 444/720 atomic regions from SNP 133155 to 133755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,015 DEBUG Processing 73/675 atomic regions from SNP 21672 to 22273 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,084 DEBUG Processing 607/657 atomic regions from SNP 182021 to 182621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,093 DEBUG Processing 171/704 atomic regions from SNP 51146 to 51746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,165 DEBUG Processing 445/720 atomic regions from SNP 133455 to 134055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,239 DEBUG Processing 74/675 atomic regions from SNP 21973 to 22574 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,315 DEBUG Processing 608/657 atomic regions from SNP 182321 to 182921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,335 DEBUG Processing 172/704 atomic regions from SNP 51446 to 52046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,410 DEBUG Processing 446/720 atomic regions from SNP 133755 to 134355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,471 DEBUG Processing 75/675 atomic regions from SNP 22274 to 22875 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,552 DEBUG Processing 609/657 atomic regions from SNP 182621 to 183221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,585 DEBUG Processing 173/704 atomic regions from SNP 51746 to 52346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,674 DEBUG Processing 447/720 atomic regions from SNP 134055 to 134655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:46,688 DEBUG Processing 76/675 atomic regions from SNP 22575 to 23176 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,784 DEBUG Processing 610/657 atomic regions from SNP 182921 to 183521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:46,825 DEBUG Processing 174/704 atomic regions from SNP 52046 to 52646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:46,899 DEBUG Processing 77/675 atomic regions from SNP 22876 to 23477 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:46,923 DEBUG Processing 448/720 atomic regions from SNP 134355 to 134955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,014 DEBUG Processing 611/657 atomic regions from SNP 183221 to 183821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,066 DEBUG Processing 175/704 atomic regions from SNP 52346 to 52946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,113 DEBUG Processing 78/675 atomic regions from SNP 23177 to 23778 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,159 DEBUG Processing 449/720 atomic regions from SNP 134655 to 135255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,240 DEBUG Processing 612/657 atomic regions from SNP 183521 to 184121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,305 DEBUG Processing 176/704 atomic regions from SNP 52646 to 53246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,332 DEBUG Processing 79/675 atomic regions from SNP 23478 to 24079 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,412 DEBUG Processing 450/720 atomic regions from SNP 134955 to 135555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,473 DEBUG Processing 613/657 atomic regions from SNP 183821 to 184421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,551 DEBUG Processing 177/704 atomic regions from SNP 52946 to 53546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,558 DEBUG Processing 80/675 atomic regions from SNP 23779 to 24380 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,655 DEBUG Processing 451/720 atomic regions from SNP 135255 to 135855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,706 DEBUG Processing 614/657 atomic regions from SNP 184121 to 184721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:47,796 DEBUG Processing 81/675 atomic regions from SNP 24080 to 24681 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:47,801 DEBUG Processing 178/704 atomic regions from SNP 53246 to 53846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:47,892 DEBUG Processing 452/720 atomic regions from SNP 135555 to 136155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:47,932 DEBUG Processing 615/657 atomic regions from SNP 184421 to 185021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,030 DEBUG Processing 82/675 atomic regions from SNP 24381 to 24982 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,047 DEBUG Processing 179/704 atomic regions from SNP 53546 to 54146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,128 DEBUG Processing 453/720 atomic regions from SNP 135855 to 136455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,154 DEBUG Processing 616/657 atomic regions from SNP 184721 to 185321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,263 DEBUG Processing 83/675 atomic regions from SNP 24682 to 25283 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,296 DEBUG Processing 180/704 atomic regions from SNP 53846 to 54446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,363 DEBUG Processing 454/720 atomic regions from SNP 136155 to 136755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,374 DEBUG Processing 617/657 atomic regions from SNP 185021 to 185621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,496 DEBUG Processing 84/675 atomic regions from SNP 24983 to 25584 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,543 DEBUG Processing 181/704 atomic regions from SNP 54146 to 54746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,594 DEBUG Processing 618/657 atomic regions from SNP 185321 to 185921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,599 DEBUG Processing 455/720 atomic regions from SNP 136455 to 137055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,724 DEBUG Processing 85/675 atomic regions from SNP 25284 to 25885 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:48,791 DEBUG Processing 182/704 atomic regions from SNP 54446 to 55046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:48,827 DEBUG Processing 619/657 atomic regions from SNP 185621 to 186221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:48,850 DEBUG Processing 456/720 atomic regions from SNP 136755 to 137355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:48,962 DEBUG Processing 86/675 atomic regions from SNP 25585 to 26186 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,039 DEBUG Processing 183/704 atomic regions from SNP 54746 to 55346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,080 DEBUG Processing 620/657 atomic regions from SNP 185921 to 186521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,091 DEBUG Processing 457/720 atomic regions from SNP 137055 to 137655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,186 DEBUG Processing 87/675 atomic regions from SNP 25886 to 26487 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,287 DEBUG Processing 184/704 atomic regions from SNP 55046 to 55646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,314 DEBUG Processing 621/657 atomic regions from SNP 186221 to 186821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,333 DEBUG Processing 458/720 atomic regions from SNP 137355 to 137955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,400 DEBUG Processing 88/675 atomic regions from SNP 26187 to 26788 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,531 DEBUG Processing 185/704 atomic regions from SNP 55346 to 55946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,547 DEBUG Processing 622/657 atomic regions from SNP 186521 to 187121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,572 DEBUG Processing 459/720 atomic regions from SNP 137655 to 138255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,615 DEBUG Processing 89/675 atomic regions from SNP 26488 to 27089 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:49,779 DEBUG Processing 186/704 atomic regions from SNP 55646 to 56246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:49,792 DEBUG Processing 623/657 atomic regions from SNP 186821 to 187421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:49,817 DEBUG Processing 460/720 atomic regions from SNP 137955 to 138555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:49,841 DEBUG Processing 90/675 atomic regions from SNP 26789 to 27390 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,024 DEBUG Processing 187/704 atomic regions from SNP 55946 to 56546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,037 DEBUG Processing 624/657 atomic regions from SNP 187121 to 187721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,064 DEBUG Processing 461/720 atomic regions from SNP 138255 to 138855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,074 DEBUG Processing 91/675 atomic regions from SNP 27090 to 27691 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,271 DEBUG Processing 188/704 atomic regions from SNP 56246 to 56846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,301 DEBUG Processing 625/657 atomic regions from SNP 187421 to 188021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,309 DEBUG Processing 92/675 atomic regions from SNP 27391 to 27992 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,319 DEBUG Processing 462/720 atomic regions from SNP 138555 to 139155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,528 DEBUG Processing 189/704 atomic regions from SNP 56546 to 57146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,551 DEBUG Processing 626/657 atomic regions from SNP 187721 to 188321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,552 DEBUG Processing 93/675 atomic regions from SNP 27692 to 28293 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,579 DEBUG Processing 463/720 atomic regions from SNP 138855 to 139455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:50,775 DEBUG Processing 190/704 atomic regions from SNP 56846 to 57446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:50,790 DEBUG Processing 94/675 atomic regions from SNP 27993 to 28594 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:50,795 DEBUG Processing 627/657 atomic regions from SNP 188021 to 188621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:50,832 DEBUG Processing 464/720 atomic regions from SNP 139155 to 139755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,023 DEBUG Processing 191/704 atomic regions from SNP 57146 to 57746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,047 DEBUG Processing 95/675 atomic regions from SNP 28294 to 28895 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,052 DEBUG Processing 628/657 atomic regions from SNP 188321 to 188921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,096 DEBUG Processing 465/720 atomic regions from SNP 139455 to 140055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,264 DEBUG Processing 192/704 atomic regions from SNP 57446 to 58046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,281 DEBUG Processing 96/675 atomic regions from SNP 28595 to 29196 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,287 DEBUG Processing 629/657 atomic regions from SNP 188621 to 189221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,348 DEBUG Processing 466/720 atomic regions from SNP 139755 to 140355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,500 DEBUG Processing 193/704 atomic regions from SNP 57746 to 58346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,508 DEBUG Processing 97/675 atomic regions from SNP 28896 to 29497 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,530 DEBUG Processing 630/657 atomic regions from SNP 188921 to 189521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,619 DEBUG Processing 467/720 atomic regions from SNP 140055 to 140655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,745 DEBUG Processing 98/675 atomic regions from SNP 29197 to 29798 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:51,751 DEBUG Processing 194/704 atomic regions from SNP 58046 to 58646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:51,774 DEBUG Processing 631/657 atomic regions from SNP 189221 to 189821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:51,873 DEBUG Processing 468/720 atomic regions from SNP 140355 to 140955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:51,981 DEBUG Processing 99/675 atomic regions from SNP 29498 to 30099 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,003 DEBUG Processing 195/704 atomic regions from SNP 58346 to 58946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,015 DEBUG Processing 632/657 atomic regions from SNP 189521 to 190121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,122 DEBUG Processing 469/720 atomic regions from SNP 140655 to 141255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,214 DEBUG Processing 100/675 atomic regions from SNP 29799 to 30400 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,248 DEBUG Processing 196/704 atomic regions from SNP 58646 to 59246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,255 DEBUG Processing 633/657 atomic regions from SNP 189821 to 190421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,369 DEBUG Processing 470/720 atomic regions from SNP 140955 to 141555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,448 DEBUG Processing 101/675 atomic regions from SNP 30100 to 30701 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,494 DEBUG Processing 634/657 atomic regions from SNP 190121 to 190721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,495 DEBUG Processing 197/704 atomic regions from SNP 58946 to 59546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,614 DEBUG Processing 471/720 atomic regions from SNP 141255 to 141855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,712 DEBUG Processing 102/675 atomic regions from SNP 30401 to 31002 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,737 DEBUG Processing 635/657 atomic regions from SNP 190421 to 191021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:52,748 DEBUG Processing 198/704 atomic regions from SNP 59246 to 59846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:52,864 DEBUG chr12:0-120129022: Signal thresholds approximated 2025-01-31 09:54:52,865 DEBUG chr12: Signal quantile: 0.993. signal threshold: 15. Best RMSEA: 0.018 2025-01-31 09:54:52,870 DEBUG Processing 472/720 atomic regions from SNP 141555 to 142155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:52,976 DEBUG Processing 103/675 atomic regions from SNP 30702 to 31303 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:52,988 DEBUG Processing 636/657 atomic regions from SNP 190721 to 191321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,001 DEBUG Processing 199/704 atomic regions from SNP 59546 to 60146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,117 DEBUG Processing 473/720 atomic regions from SNP 141855 to 142455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,212 DEBUG Processing 104/675 atomic regions from SNP 31003 to 31604 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,230 DEBUG Processing 637/657 atomic regions from SNP 191021 to 191621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,262 DEBUG Processing 200/704 atomic regions from SNP 59846 to 60446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,376 DEBUG Processing 474/720 atomic regions from SNP 142155 to 142755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,473 DEBUG Processing 105/675 atomic regions from SNP 31304 to 31905 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,475 DEBUG Processing 638/657 atomic regions from SNP 191321 to 191921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,512 DEBUG Processing 201/704 atomic regions from SNP 60146 to 60746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,617 DEBUG Processing 475/720 atomic regions from SNP 142455 to 143055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:53,730 DEBUG Processing 639/657 atomic regions from SNP 191621 to 192221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:53,744 DEBUG Processing 106/675 atomic regions from SNP 31605 to 32206 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:53,758 DEBUG Processing 202/704 atomic regions from SNP 60446 to 61046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:53,865 DEBUG Processing 476/720 atomic regions from SNP 142755 to 143355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,003 DEBUG Processing 640/657 atomic regions from SNP 191921 to 192521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,009 DEBUG Processing 203/704 atomic regions from SNP 60746 to 61346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,017 DEBUG Processing 107/675 atomic regions from SNP 31906 to 32507 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,118 DEBUG Processing 477/720 atomic regions from SNP 143055 to 143655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,247 DEBUG Processing 641/657 atomic regions from SNP 192221 to 192821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,254 DEBUG Processing 108/675 atomic regions from SNP 32207 to 32808 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,256 DEBUG Processing 204/704 atomic regions from SNP 61046 to 61646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,363 DEBUG Processing 478/720 atomic regions from SNP 143355 to 143955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,491 DEBUG Processing 109/675 atomic regions from SNP 32508 to 33109 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,510 DEBUG Processing 205/704 atomic regions from SNP 61346 to 61946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,516 DEBUG Processing 642/657 atomic regions from SNP 192521 to 193121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,610 DEBUG Processing 479/720 atomic regions from SNP 143655 to 144255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,716 DEBUG Processing 110/675 atomic regions from SNP 32809 to 33410 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,750 DEBUG Processing 206/704 atomic regions from SNP 61646 to 62246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:54,769 DEBUG Processing 643/657 atomic regions from SNP 192821 to 193421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:54,851 DEBUG Processing 480/720 atomic regions from SNP 143955 to 144555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:54,939 DEBUG Processing 111/675 atomic regions from SNP 33110 to 33711 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:54,987 DEBUG Processing 207/704 atomic regions from SNP 61946 to 62546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,023 DEBUG Processing 644/657 atomic regions from SNP 193121 to 193721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,096 DEBUG Processing 481/720 atomic regions from SNP 144255 to 144855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,163 DEBUG Processing 112/675 atomic regions from SNP 33411 to 34012 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,221 DEBUG chr12 total SNP count: 197740 2025-01-31 09:54:55,221 DEBUG chr12 length: 120129022 2025-01-31 09:54:55,221 DEBUG ----------------------------------------- 2025-01-31 09:54:55,221 INFO Processing SNPs in chr12 2025-01-31 09:54:55,229 DEBUG Processing 208/704 atomic regions from SNP 62246 to 62846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,267 DEBUG Processing 645/657 atomic regions from SNP 193421 to 194021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,341 DEBUG Processing 482/720 atomic regions from SNP 144555 to 145155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,420 DEBUG Processing 113/675 atomic regions from SNP 33712 to 34313 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,433 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 197740)] 2025-01-31 09:54:55,462 DEBUG Processing 209/704 atomic regions from SNP 62546 to 63146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,509 DEBUG Processing 646/657 atomic regions from SNP 193721 to 194321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,578 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:54:55,586 DEBUG Processing 483/720 atomic regions from SNP 144855 to 145455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,672 DEBUG Processing 114/675 atomic regions from SNP 34013 to 34614 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,697 DEBUG Processing 210/704 atomic regions from SNP 62846 to 63446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,738 DEBUG Processing 647/657 atomic regions from SNP 194021 to 194621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:55,831 DEBUG Processing 484/720 atomic regions from SNP 145155 to 145755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:55,933 DEBUG Processing 115/675 atomic regions from SNP 34314 to 34915 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:55,938 DEBUG Processing 211/704 atomic regions from SNP 63146 to 63746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:55,968 DEBUG Processing 648/657 atomic regions from SNP 194321 to 194921 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,066 DEBUG Processing 485/720 atomic regions from SNP 145455 to 146055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,175 DEBUG Processing 212/704 atomic regions from SNP 63446 to 64046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,188 DEBUG Processing 116/675 atomic regions from SNP 34615 to 35216 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,201 DEBUG Processing 649/657 atomic regions from SNP 194621 to 195221 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,309 DEBUG Processing 486/720 atomic regions from SNP 145755 to 146355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,412 DEBUG Processing 213/704 atomic regions from SNP 63746 to 64346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,414 DEBUG Processing 117/675 atomic regions from SNP 34916 to 35517 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,433 DEBUG Processing 650/657 atomic regions from SNP 194921 to 195521 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,544 DEBUG Processing 487/720 atomic regions from SNP 146055 to 146655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,640 DEBUG Processing 118/675 atomic regions from SNP 35217 to 35818 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,648 DEBUG Processing 214/704 atomic regions from SNP 64046 to 64646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,666 DEBUG Processing 651/657 atomic regions from SNP 195221 to 195821 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:56,775 DEBUG Processing 488/720 atomic regions from SNP 146355 to 146955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:56,881 DEBUG Processing 119/675 atomic regions from SNP 35518 to 36119 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:56,889 DEBUG Processing 215/704 atomic regions from SNP 64346 to 64946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:56,902 DEBUG Processing 652/657 atomic regions from SNP 195521 to 196121 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,013 DEBUG Processing 489/720 atomic regions from SNP 146655 to 147255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,128 DEBUG Processing 120/675 atomic regions from SNP 35819 to 36420 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,134 DEBUG Processing 216/704 atomic regions from SNP 64646 to 65246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,140 DEBUG Processing 653/657 atomic regions from SNP 195821 to 196421 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,249 DEBUG Processing 490/720 atomic regions from SNP 146955 to 147555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,377 DEBUG Processing 217/704 atomic regions from SNP 64946 to 65546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,379 DEBUG Processing 654/657 atomic regions from SNP 196121 to 196721 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,393 DEBUG Processing 121/675 atomic regions from SNP 36120 to 36721 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,485 DEBUG Processing 491/720 atomic regions from SNP 147255 to 147855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,621 DEBUG Processing 655/657 atomic regions from SNP 196421 to 197021 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,624 DEBUG Processing 218/704 atomic regions from SNP 65246 to 65846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,651 DEBUG Processing 122/675 atomic regions from SNP 36421 to 37022 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,733 DEBUG Processing 492/720 atomic regions from SNP 147555 to 148155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:57,878 DEBUG Processing 656/657 atomic regions from SNP 196721 to 197321 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:57,886 DEBUG Processing 219/704 atomic regions from SNP 65546 to 66146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:57,918 DEBUG Processing 123/675 atomic regions from SNP 36722 to 37323 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:57,972 DEBUG Processing 493/720 atomic regions from SNP 147855 to 148455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,116 DEBUG Processing 657/657 atomic regions from SNP 197021 to 197621 for chr14 (subchromosome 2 of 2). 2025-01-31 09:54:58,131 DEBUG Processing 220/704 atomic regions from SNP 65846 to 66446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,146 DEBUG Processing 124/675 atomic regions from SNP 37023 to 37624 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,207 DEBUG Processing 494/720 atomic regions from SNP 148155 to 148755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,258 DEBUG Unique SNPs positions in subchromosome 2: 197622 2025-01-31 09:54:58,371 DEBUG Processing 221/704 atomic regions from SNP 66146 to 66746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,374 DEBUG Processing 125/675 atomic regions from SNP 37324 to 37925 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,432 DEBUG Processing 495/720 atomic regions from SNP 148455 to 149055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,607 DEBUG Processing 126/675 atomic regions from SNP 37625 to 38226 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,612 DEBUG Processing 222/704 atomic regions from SNP 66446 to 67046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,662 DEBUG Processing 496/720 atomic regions from SNP 148755 to 149355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:58,834 DEBUG Processing 127/675 atomic regions from SNP 37926 to 38527 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:58,848 DEBUG Processing 223/704 atomic regions from SNP 66746 to 67346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:58,890 DEBUG Processing 497/720 atomic regions from SNP 149055 to 149655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,065 DEBUG Processing 128/675 atomic regions from SNP 38227 to 38828 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,092 DEBUG Processing 224/704 atomic regions from SNP 67046 to 67646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,132 DEBUG Processing 498/720 atomic regions from SNP 149355 to 149955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,294 DEBUG Processing 129/675 atomic regions from SNP 38528 to 39129 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,334 DEBUG Processing 225/704 atomic regions from SNP 67346 to 67946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,374 DEBUG Processing 499/720 atomic regions from SNP 149655 to 150255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,519 DEBUG Processing 130/675 atomic regions from SNP 38829 to 39430 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,573 DEBUG Processing 226/704 atomic regions from SNP 67646 to 68246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,614 DEBUG Processing 500/720 atomic regions from SNP 149955 to 150555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,746 DEBUG Processing 131/675 atomic regions from SNP 39130 to 39731 for chr13 (subchromosome 1 of 1). 2025-01-31 09:54:59,816 DEBUG Processing 227/704 atomic regions from SNP 67946 to 68546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:54:59,859 DEBUG Processing 501/720 atomic regions from SNP 150255 to 150855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:54:59,980 DEBUG Processing 132/675 atomic regions from SNP 39431 to 40032 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,059 DEBUG Processing 228/704 atomic regions from SNP 68246 to 68846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,097 DEBUG Processing 502/720 atomic regions from SNP 150555 to 151155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,207 DEBUG Processing 133/675 atomic regions from SNP 39732 to 40333 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,294 DEBUG Processing 229/704 atomic regions from SNP 68546 to 69146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,331 DEBUG Processing 503/720 atomic regions from SNP 150855 to 151455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,435 DEBUG Processing 134/675 atomic regions from SNP 40033 to 40634 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,529 DEBUG Processing 230/704 atomic regions from SNP 68846 to 69446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,560 DEBUG Processing 504/720 atomic regions from SNP 151155 to 151755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,665 DEBUG Processing 135/675 atomic regions from SNP 40334 to 40935 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,767 DEBUG Processing 231/704 atomic regions from SNP 69146 to 69746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:00,797 DEBUG Processing 505/720 atomic regions from SNP 151455 to 152055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:00,890 DEBUG Processing 136/675 atomic regions from SNP 40635 to 41236 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:00,998 DEBUG Processing 232/704 atomic regions from SNP 69446 to 70046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,030 DEBUG Processing 506/720 atomic regions from SNP 151755 to 152355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,114 DEBUG Processing 137/675 atomic regions from SNP 40936 to 41537 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,227 DEBUG Processing 233/704 atomic regions from SNP 69746 to 70346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,261 DEBUG Processing 507/720 atomic regions from SNP 152055 to 152655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,335 DEBUG Processing 138/675 atomic regions from SNP 41237 to 41838 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,457 DEBUG Processing 234/704 atomic regions from SNP 70046 to 70646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,493 DEBUG Processing 508/720 atomic regions from SNP 152355 to 152955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,555 DEBUG Processing 139/675 atomic regions from SNP 41538 to 42139 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,692 DEBUG Processing 235/704 atomic regions from SNP 70346 to 70946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,726 DEBUG Processing 509/720 atomic regions from SNP 152655 to 153255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:01,782 DEBUG Processing 140/675 atomic regions from SNP 41839 to 42440 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:01,932 DEBUG Processing 236/704 atomic regions from SNP 70646 to 71246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:01,961 DEBUG Processing 510/720 atomic regions from SNP 152955 to 153555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,008 DEBUG Processing 141/675 atomic regions from SNP 42140 to 42741 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,165 DEBUG Processing 237/704 atomic regions from SNP 70946 to 71546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,196 DEBUG Processing 511/720 atomic regions from SNP 153255 to 153855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,234 DEBUG Processing 142/675 atomic regions from SNP 42441 to 43042 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,396 DEBUG Processing 238/704 atomic regions from SNP 71246 to 71846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,435 DEBUG Processing 512/720 atomic regions from SNP 153555 to 154155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,461 DEBUG Processing 143/675 atomic regions from SNP 42742 to 43343 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,627 DEBUG Processing 239/704 atomic regions from SNP 71546 to 72146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,673 DEBUG Processing 513/720 atomic regions from SNP 153855 to 154455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,692 DEBUG Processing 144/675 atomic regions from SNP 43043 to 43644 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:02,849 DEBUG Processing 240/704 atomic regions from SNP 71846 to 72446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:02,909 DEBUG Processing 514/720 atomic regions from SNP 154155 to 154755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:02,915 DEBUG Processing 145/675 atomic regions from SNP 43344 to 43945 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,075 DEBUG Processing 241/704 atomic regions from SNP 72146 to 72746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,132 DEBUG Processing 146/675 atomic regions from SNP 43645 to 44246 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,146 DEBUG Processing 515/720 atomic regions from SNP 154455 to 155055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,309 DEBUG Processing 242/704 atomic regions from SNP 72446 to 73046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,361 DEBUG Processing 147/675 atomic regions from SNP 43946 to 44547 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,376 DEBUG Processing 516/720 atomic regions from SNP 154755 to 155355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,544 DEBUG Processing 243/704 atomic regions from SNP 72746 to 73346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,580 DEBUG Processing 148/675 atomic regions from SNP 44247 to 44848 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,602 DEBUG Processing 517/720 atomic regions from SNP 155055 to 155655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:03,774 DEBUG Processing 244/704 atomic regions from SNP 73046 to 73646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:03,800 DEBUG Processing 149/675 atomic regions from SNP 44548 to 45149 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:03,829 DEBUG Processing 518/720 atomic regions from SNP 155355 to 155955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,018 DEBUG Processing 245/704 atomic regions from SNP 73346 to 73946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,028 DEBUG Processing 150/675 atomic regions from SNP 44849 to 45450 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,056 DEBUG Processing 519/720 atomic regions from SNP 155655 to 156255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,262 DEBUG Processing 151/675 atomic regions from SNP 45150 to 45751 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,267 DEBUG Processing 246/704 atomic regions from SNP 73646 to 74246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,289 DEBUG Processing 520/720 atomic regions from SNP 155955 to 156555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,505 DEBUG Processing 247/704 atomic regions from SNP 73946 to 74546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,516 DEBUG Processing 521/720 atomic regions from SNP 156255 to 156855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,523 DEBUG Processing 152/675 atomic regions from SNP 45451 to 46052 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,739 DEBUG Processing 248/704 atomic regions from SNP 74246 to 74846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,743 DEBUG Processing 522/720 atomic regions from SNP 156555 to 157155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,750 DEBUG Processing 153/675 atomic regions from SNP 45752 to 46353 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:04,970 DEBUG Processing 249/704 atomic regions from SNP 74546 to 75146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:04,971 DEBUG Processing 523/720 atomic regions from SNP 156855 to 157455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:04,972 DEBUG Processing 154/675 atomic regions from SNP 46053 to 46654 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,198 DEBUG Processing 155/675 atomic regions from SNP 46354 to 46955 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,202 DEBUG Processing 250/704 atomic regions from SNP 74846 to 75446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,208 DEBUG Processing 524/720 atomic regions from SNP 157155 to 157755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,422 DEBUG Processing 156/675 atomic regions from SNP 46655 to 47256 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,436 DEBUG Processing 251/704 atomic regions from SNP 75146 to 75746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,450 DEBUG Processing 525/720 atomic regions from SNP 157455 to 158055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,649 DEBUG Processing 157/675 atomic regions from SNP 46956 to 47557 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,668 DEBUG Processing 252/704 atomic regions from SNP 75446 to 76046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,682 DEBUG Processing 526/720 atomic regions from SNP 157755 to 158355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:05,886 DEBUG Processing 158/675 atomic regions from SNP 47257 to 47858 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:05,902 DEBUG Processing 253/704 atomic regions from SNP 75746 to 76346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:05,920 DEBUG Processing 527/720 atomic regions from SNP 158055 to 158655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,123 DEBUG Processing 159/675 atomic regions from SNP 47558 to 48159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,136 DEBUG Processing 254/704 atomic regions from SNP 76046 to 76646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,157 DEBUG Processing 528/720 atomic regions from SNP 158355 to 158955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,348 DEBUG Processing 160/675 atomic regions from SNP 47859 to 48459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,367 DEBUG Processing 255/704 atomic regions from SNP 76346 to 76946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,384 DEBUG Processing 529/720 atomic regions from SNP 158655 to 159255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,573 DEBUG Processing 161/675 atomic regions from SNP 48159 to 48759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,602 DEBUG Processing 256/704 atomic regions from SNP 76646 to 77246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:06,612 DEBUG Processing 530/720 atomic regions from SNP 158955 to 159555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,798 DEBUG Processing 162/675 atomic regions from SNP 48459 to 49059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:06,838 DEBUG Processing 531/720 atomic regions from SNP 159255 to 159855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:06,840 DEBUG Processing 257/704 atomic regions from SNP 76946 to 77546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,023 DEBUG Processing 163/675 atomic regions from SNP 48759 to 49359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,067 DEBUG Processing 532/720 atomic regions from SNP 159555 to 160155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,076 DEBUG Processing 258/704 atomic regions from SNP 77246 to 77846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,254 DEBUG Processing 164/675 atomic regions from SNP 49059 to 49659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,309 DEBUG Processing 533/720 atomic regions from SNP 159855 to 160455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,321 DEBUG Processing 259/704 atomic regions from SNP 77546 to 78146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,474 DEBUG Processing 165/675 atomic regions from SNP 49359 to 49959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,540 DEBUG Processing 534/720 atomic regions from SNP 160155 to 160755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,570 DEBUG Processing 260/704 atomic regions from SNP 77846 to 78446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,676 DEBUG Subchromosome time: 185.06394484394696, subchromosome SNPs: 197622 2025-01-31 09:55:07,676 DEBUG Estimated BADs: [0.57, 1.72, 17.23, 0.86, 8.62, 3.45, 6.89, 3.45, 1.72, 0.43, 1.72, 3.45, 0.57, 8.62, 1.72, 8.62, 3.45, 1.72, 3.45, 0.34, 1.72, 0.34, 0.86, 0.34, 1.72, 5.17, 1.72] SNP counts: [153, 18870, 89, 2030, 3792, 14426, 3945, 6003, 3603, 5425, 3530, 7895, 1911, 2875, 2067, 2211, 28167, 5358, 10503, 9918, 2406, 17981, 15303, 9293, 13970, 1347, 4704] SNP IDs counts: [153, 18870, 89, 2030, 3792, 14426, 3945, 6003, 3603, 5425, 3530, 7895, 1911, 2875, 2067, 2211, 28167, 5358, 10503, 9918, 2406, 17981, 15303, 9293, 13970, 1347, 4704] Critical gap: 625175bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.03Mbp], 5.13Mbp[0.71Mbp], 18.23Mbp, 18.29Mbp, 19.70Mbp, 21.70Mbp, 29.89Mbp, 31.97Mbp, 35.16Mbp, 37.24Mbp, 40.51Mbp, 45.30Mbp, 49.55Mbp, 50.78Mbp, 52.50Mbp, 54.36Mbp, 55.54Mbp, 71.22Mbp, 74.29Mbp, 79.97Mbp, 86.23Mbp, 87.54Mbp, 98.75Mbp, 107.51Mbp, 113.28Mbp, 121.25Mbp, 121.95Mbp, 124.90Mbp] 2025-01-31 09:55:07,676 DEBUG chr14 time: 185.06459848291706 s 2025-01-31 09:55:07,688 DEBUG Processing 166/675 atomic regions from SNP 49659 to 50259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:07,770 DEBUG Processing 535/720 atomic regions from SNP 160455 to 161055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:07,816 DEBUG chr14: Fitting background model for 27 segments 2025-01-31 09:55:07,839 DEBUG Processing 261/704 atomic regions from SNP 78146 to 78746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:07,912 DEBUG Processing 167/675 atomic regions from SNP 49959 to 50559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,009 DEBUG Processing 536/720 atomic regions from SNP 160755 to 161355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,082 DEBUG Processing 262/704 atomic regions from SNP 78446 to 79046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,135 DEBUG Processing 168/675 atomic regions from SNP 50259 to 50859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,257 DEBUG Processing 537/720 atomic regions from SNP 161055 to 161655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,321 DEBUG Processing 263/704 atomic regions from SNP 78746 to 79346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,372 DEBUG Processing 169/675 atomic regions from SNP 50559 to 51159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,492 DEBUG Processing 538/720 atomic regions from SNP 161355 to 161955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,560 DEBUG Processing 264/704 atomic regions from SNP 79046 to 79646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,608 DEBUG Processing 170/675 atomic regions from SNP 50859 to 51459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:08,749 DEBUG Processing 539/720 atomic regions from SNP 161655 to 162255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:08,799 DEBUG Processing 265/704 atomic regions from SNP 79346 to 79946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:08,837 DEBUG Processing 171/675 atomic regions from SNP 51159 to 51759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,014 DEBUG Processing 540/720 atomic regions from SNP 161955 to 162555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,055 DEBUG Processing 266/704 atomic regions from SNP 79646 to 80246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,068 DEBUG Processing 172/675 atomic regions from SNP 51459 to 52059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,256 DEBUG Processing 541/720 atomic regions from SNP 162255 to 162855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,286 DEBUG Processing 267/704 atomic regions from SNP 79946 to 80546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,293 DEBUG Processing 173/675 atomic regions from SNP 51759 to 52359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,507 DEBUG Processing 542/720 atomic regions from SNP 162555 to 163155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,527 DEBUG Processing 174/675 atomic regions from SNP 52059 to 52659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,554 DEBUG Processing 268/704 atomic regions from SNP 80246 to 80846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,747 DEBUG Processing 543/720 atomic regions from SNP 162855 to 163455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:09,784 DEBUG Processing 175/675 atomic regions from SNP 52359 to 52959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:09,827 DEBUG Processing 269/704 atomic regions from SNP 80546 to 81146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:09,988 DEBUG Processing 544/720 atomic regions from SNP 163155 to 163755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,046 DEBUG Processing 176/675 atomic regions from SNP 52659 to 53259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,088 DEBUG Processing 270/704 atomic regions from SNP 80846 to 81446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,236 DEBUG Processing 545/720 atomic regions from SNP 163455 to 164055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,315 DEBUG Processing 177/675 atomic regions from SNP 52959 to 53559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,326 DEBUG Processing 271/704 atomic regions from SNP 81146 to 81746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,502 DEBUG Processing 546/720 atomic regions from SNP 163755 to 164355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,558 DEBUG Processing 178/675 atomic regions from SNP 53259 to 53859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,565 DEBUG Processing 272/704 atomic regions from SNP 81446 to 82046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,745 DEBUG Processing 547/720 atomic regions from SNP 164055 to 164655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:10,789 DEBUG Processing 179/675 atomic regions from SNP 53559 to 54159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:10,805 DEBUG Processing 273/704 atomic regions from SNP 81746 to 82346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:10,990 DEBUG Processing 548/720 atomic regions from SNP 164355 to 164955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,022 DEBUG Processing 180/675 atomic regions from SNP 53859 to 54459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,041 DEBUG Processing 274/704 atomic regions from SNP 82046 to 82646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,231 DEBUG Processing 549/720 atomic regions from SNP 164655 to 165255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,266 DEBUG Processing 181/675 atomic regions from SNP 54159 to 54759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,282 DEBUG Processing 275/704 atomic regions from SNP 82346 to 82946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,490 DEBUG Processing 550/720 atomic regions from SNP 164955 to 165555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,498 DEBUG Processing 182/675 atomic regions from SNP 54459 to 55059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,547 DEBUG Processing 276/704 atomic regions from SNP 82646 to 83246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,727 DEBUG Processing 183/675 atomic regions from SNP 54759 to 55359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,730 DEBUG Processing 551/720 atomic regions from SNP 165255 to 165855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:11,817 DEBUG Processing 277/704 atomic regions from SNP 82946 to 83546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:11,956 DEBUG Processing 184/675 atomic regions from SNP 55059 to 55659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:11,963 DEBUG Processing 552/720 atomic regions from SNP 165555 to 166155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,074 DEBUG Processing 278/704 atomic regions from SNP 83246 to 83846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,211 DEBUG Processing 185/675 atomic regions from SNP 55359 to 55959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,219 DEBUG Processing 553/720 atomic regions from SNP 165855 to 166455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,317 DEBUG Processing 279/704 atomic regions from SNP 83546 to 84146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,453 DEBUG Processing 554/720 atomic regions from SNP 166155 to 166755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,461 DEBUG Processing 186/675 atomic regions from SNP 55659 to 56259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,550 DEBUG Processing 280/704 atomic regions from SNP 83846 to 84446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,681 DEBUG Processing 555/720 atomic regions from SNP 166455 to 167055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,702 DEBUG Processing 187/675 atomic regions from SNP 55959 to 56559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:12,806 DEBUG Processing 281/704 atomic regions from SNP 84146 to 84746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:12,915 DEBUG Processing 556/720 atomic regions from SNP 166755 to 167355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:12,957 DEBUG Processing 188/675 atomic regions from SNP 56259 to 56859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,056 DEBUG Processing 282/704 atomic regions from SNP 84446 to 85046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,142 DEBUG Processing 557/720 atomic regions from SNP 167055 to 167655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,184 DEBUG Processing 189/675 atomic regions from SNP 56559 to 57159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,287 DEBUG Processing 283/704 atomic regions from SNP 84746 to 85346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,377 DEBUG Processing 558/720 atomic regions from SNP 167355 to 167955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,418 DEBUG Processing 190/675 atomic regions from SNP 56859 to 57459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,518 DEBUG Processing 284/704 atomic regions from SNP 85046 to 85646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,615 DEBUG Processing 559/720 atomic regions from SNP 167655 to 168255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,652 DEBUG Processing 191/675 atomic regions from SNP 57159 to 57759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,749 DEBUG Processing 285/704 atomic regions from SNP 85346 to 85946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:13,846 DEBUG Processing 560/720 atomic regions from SNP 167955 to 168555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:13,885 DEBUG Processing 192/675 atomic regions from SNP 57459 to 58059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:13,986 DEBUG Processing 286/704 atomic regions from SNP 85646 to 86246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,083 DEBUG Processing 561/720 atomic regions from SNP 168255 to 168855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,112 DEBUG Processing 193/675 atomic regions from SNP 57759 to 58359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,218 DEBUG Processing 287/704 atomic regions from SNP 85946 to 86546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,313 DEBUG Processing 562/720 atomic regions from SNP 168555 to 169155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,334 DEBUG Processing 194/675 atomic regions from SNP 58059 to 58659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,457 DEBUG Processing 288/704 atomic regions from SNP 86246 to 86846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,550 DEBUG Processing 563/720 atomic regions from SNP 168855 to 169455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,568 DEBUG Processing 195/675 atomic regions from SNP 58359 to 58959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,698 DEBUG Processing 289/704 atomic regions from SNP 86546 to 87146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:14,788 DEBUG Processing 564/720 atomic regions from SNP 169155 to 169755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:14,795 DEBUG Processing 196/675 atomic regions from SNP 58659 to 59259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:14,943 DEBUG Processing 290/704 atomic regions from SNP 86846 to 87446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,039 DEBUG Processing 197/675 atomic regions from SNP 58959 to 59559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,040 DEBUG Processing 565/720 atomic regions from SNP 169455 to 170055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,189 DEBUG Processing 291/704 atomic regions from SNP 87146 to 87746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,277 DEBUG Processing 566/720 atomic regions from SNP 169755 to 170355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,288 DEBUG Processing 198/675 atomic regions from SNP 59259 to 59859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,423 DEBUG Processing 292/704 atomic regions from SNP 87446 to 88046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,512 DEBUG Processing 567/720 atomic regions from SNP 170055 to 170655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,555 DEBUG Processing 199/675 atomic regions from SNP 59559 to 60159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,664 DEBUG Processing 293/704 atomic regions from SNP 87746 to 88346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,751 DEBUG Processing 568/720 atomic regions from SNP 170355 to 170955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:15,794 DEBUG Processing 200/675 atomic regions from SNP 59859 to 60459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:15,892 DEBUG Processing 294/704 atomic regions from SNP 88046 to 88646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:15,980 DEBUG Processing 569/720 atomic regions from SNP 170655 to 171255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,015 DEBUG Processing 201/675 atomic regions from SNP 60159 to 60759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,124 DEBUG Processing 295/704 atomic regions from SNP 88346 to 88946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,210 DEBUG Processing 570/720 atomic regions from SNP 170955 to 171555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,241 DEBUG Processing 202/675 atomic regions from SNP 60459 to 61059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,357 DEBUG Processing 296/704 atomic regions from SNP 88646 to 89246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,447 DEBUG Processing 571/720 atomic regions from SNP 171255 to 171855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,486 DEBUG Processing 203/675 atomic regions from SNP 60759 to 61359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,605 DEBUG Processing 297/704 atomic regions from SNP 88946 to 89546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,672 DEBUG Processing 572/720 atomic regions from SNP 171555 to 172155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,739 DEBUG Processing 204/675 atomic regions from SNP 61059 to 61659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:16,848 DEBUG Processing 298/704 atomic regions from SNP 89246 to 89846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:16,921 DEBUG Processing 573/720 atomic regions from SNP 171855 to 172455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:16,968 DEBUG Processing 205/675 atomic regions from SNP 61359 to 61959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,079 DEBUG Processing 299/704 atomic regions from SNP 89546 to 90146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,153 DEBUG Processing 574/720 atomic regions from SNP 172155 to 172755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,199 DEBUG Processing 206/675 atomic regions from SNP 61659 to 62259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,334 DEBUG Processing 300/704 atomic regions from SNP 89846 to 90446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,394 DEBUG Processing 575/720 atomic regions from SNP 172455 to 173055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,433 DEBUG Processing 207/675 atomic regions from SNP 61959 to 62559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,608 DEBUG Processing 301/704 atomic regions from SNP 90146 to 90746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,644 DEBUG Processing 576/720 atomic regions from SNP 172755 to 173355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,672 DEBUG Processing 208/675 atomic regions from SNP 62259 to 62859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:17,853 DEBUG Processing 302/704 atomic regions from SNP 90446 to 91046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:17,907 DEBUG Processing 577/720 atomic regions from SNP 173055 to 173655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:17,907 DEBUG Processing 209/675 atomic regions from SNP 62559 to 63159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,091 DEBUG Processing 303/704 atomic regions from SNP 90746 to 91346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,135 DEBUG Processing 578/720 atomic regions from SNP 173355 to 173955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,140 DEBUG Processing 210/675 atomic regions from SNP 62859 to 63459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,323 DEBUG Processing 304/704 atomic regions from SNP 91046 to 91646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,355 DEBUG Processing 579/720 atomic regions from SNP 173655 to 174255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,367 DEBUG Processing 211/675 atomic regions from SNP 63159 to 63759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,560 DEBUG Processing 305/704 atomic regions from SNP 91346 to 91946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,592 DEBUG Processing 580/720 atomic regions from SNP 173955 to 174555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:18,597 DEBUG Processing 212/675 atomic regions from SNP 63459 to 64059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,805 DEBUG Processing 306/704 atomic regions from SNP 91646 to 92246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:18,822 DEBUG Processing 213/675 atomic regions from SNP 63759 to 64359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:18,823 DEBUG Processing 581/720 atomic regions from SNP 174255 to 174855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,046 DEBUG Processing 307/704 atomic regions from SNP 91946 to 92546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,050 DEBUG Processing 214/675 atomic regions from SNP 64059 to 64659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,053 DEBUG Processing 582/720 atomic regions from SNP 174555 to 175155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,279 DEBUG Processing 215/675 atomic regions from SNP 64359 to 64959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,284 DEBUG Processing 583/720 atomic regions from SNP 174855 to 175455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,285 DEBUG Processing 308/704 atomic regions from SNP 92246 to 92846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,522 DEBUG Processing 216/675 atomic regions from SNP 64659 to 65259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,533 DEBUG Processing 584/720 atomic regions from SNP 175155 to 175755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,540 DEBUG Processing 309/704 atomic regions from SNP 92546 to 93146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:19,770 DEBUG Processing 217/675 atomic regions from SNP 64959 to 65559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:19,770 DEBUG Processing 585/720 atomic regions from SNP 175455 to 176055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:19,783 DEBUG Processing 310/704 atomic regions from SNP 92846 to 93446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,006 DEBUG Processing 586/720 atomic regions from SNP 175755 to 176355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,032 DEBUG Processing 311/704 atomic regions from SNP 93146 to 93746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,036 DEBUG Processing 218/675 atomic regions from SNP 65259 to 65859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,237 DEBUG Processing 587/720 atomic regions from SNP 176055 to 176655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,269 DEBUG Processing 312/704 atomic regions from SNP 93446 to 94046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,281 DEBUG Processing 219/675 atomic regions from SNP 65559 to 66159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,365 DEBUG Segmenting atomic regions: 2025-01-31 09:55:20,458 DEBUG Processing 1/658 atomic regions from SNP 0 to 601 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,464 DEBUG Processing 588/720 atomic regions from SNP 176355 to 176955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,520 DEBUG Processing 220/675 atomic regions from SNP 65859 to 66459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,534 DEBUG Processing 313/704 atomic regions from SNP 93746 to 94346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,697 DEBUG Processing 589/720 atomic regions from SNP 176655 to 177255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,706 DEBUG Processing 2/658 atomic regions from SNP 301 to 902 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,759 DEBUG Processing 221/675 atomic regions from SNP 66159 to 66759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:20,792 DEBUG Processing 314/704 atomic regions from SNP 94046 to 94646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:20,940 DEBUG Processing 590/720 atomic regions from SNP 176955 to 177555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:20,951 DEBUG Processing 3/658 atomic regions from SNP 602 to 1203 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:20,995 DEBUG Processing 222/675 atomic regions from SNP 66459 to 67059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,051 DEBUG Processing 315/704 atomic regions from SNP 94346 to 94946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,190 DEBUG Processing 591/720 atomic regions from SNP 177255 to 177855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,215 DEBUG Processing 4/658 atomic regions from SNP 903 to 1504 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,239 DEBUG Processing 223/675 atomic regions from SNP 66759 to 67359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,313 DEBUG Processing 316/704 atomic regions from SNP 94646 to 95246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,426 DEBUG Processing 592/720 atomic regions from SNP 177555 to 178155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,462 DEBUG Processing 5/658 atomic regions from SNP 1204 to 1805 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,486 DEBUG Processing 224/675 atomic regions from SNP 67059 to 67659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,574 DEBUG Processing 317/704 atomic regions from SNP 94946 to 95546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,665 DEBUG Processing 593/720 atomic regions from SNP 177855 to 178455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,702 DEBUG Processing 6/658 atomic regions from SNP 1505 to 2106 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:21,719 DEBUG Processing 225/675 atomic regions from SNP 67359 to 67959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,827 DEBUG Processing 318/704 atomic regions from SNP 95246 to 95846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:21,916 DEBUG Processing 594/720 atomic regions from SNP 178155 to 178755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:21,956 DEBUG Processing 226/675 atomic regions from SNP 67659 to 68259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:21,956 DEBUG Processing 7/658 atomic regions from SNP 1806 to 2407 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,068 DEBUG Processing 319/704 atomic regions from SNP 95546 to 96146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,151 DEBUG Processing 595/720 atomic regions from SNP 178455 to 179055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,193 DEBUG Processing 227/675 atomic regions from SNP 67959 to 68559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,198 DEBUG Processing 8/658 atomic regions from SNP 2107 to 2708 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,308 DEBUG Processing 320/704 atomic regions from SNP 95846 to 96446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,383 DEBUG Processing 596/720 atomic regions from SNP 178755 to 179355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,427 DEBUG Processing 228/675 atomic regions from SNP 68259 to 68859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,430 DEBUG Processing 9/658 atomic regions from SNP 2408 to 3009 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,588 DEBUG Processing 321/704 atomic regions from SNP 96146 to 96746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,615 DEBUG Processing 597/720 atomic regions from SNP 179055 to 179655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,667 DEBUG Processing 229/675 atomic regions from SNP 68559 to 69159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,668 DEBUG Processing 10/658 atomic regions from SNP 2709 to 3310 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:22,843 DEBUG Processing 598/720 atomic regions from SNP 179355 to 179955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:22,856 DEBUG Processing 322/704 atomic regions from SNP 96446 to 97046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:22,900 DEBUG Processing 230/675 atomic regions from SNP 68859 to 69459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:22,917 DEBUG Processing 11/658 atomic regions from SNP 3010 to 3611 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,070 DEBUG Processing 599/720 atomic regions from SNP 179655 to 180255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,132 DEBUG Processing 323/704 atomic regions from SNP 96746 to 97346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,163 DEBUG Processing 231/675 atomic regions from SNP 69159 to 69759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,183 DEBUG Processing 12/658 atomic regions from SNP 3311 to 3912 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,298 DEBUG Processing 600/720 atomic regions from SNP 179955 to 180555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,386 DEBUG Processing 324/704 atomic regions from SNP 97046 to 97646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,419 DEBUG Processing 13/658 atomic regions from SNP 3612 to 4213 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,432 DEBUG Processing 232/675 atomic regions from SNP 69459 to 70059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,528 DEBUG Processing 601/720 atomic regions from SNP 180255 to 180855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,632 DEBUG Processing 325/704 atomic regions from SNP 97346 to 97946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,654 DEBUG Processing 14/658 atomic regions from SNP 3913 to 4514 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,690 DEBUG Processing 233/675 atomic regions from SNP 69759 to 70359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,759 DEBUG Processing 602/720 atomic regions from SNP 180555 to 181155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:23,886 DEBUG Processing 326/704 atomic regions from SNP 97646 to 98246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:23,892 DEBUG Processing 15/658 atomic regions from SNP 4214 to 4815 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:23,951 DEBUG Processing 234/675 atomic regions from SNP 70059 to 70659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:23,992 DEBUG Processing 603/720 atomic regions from SNP 180855 to 181455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,124 DEBUG Processing 16/658 atomic regions from SNP 4515 to 5116 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,148 DEBUG Processing 327/704 atomic regions from SNP 97946 to 98546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,189 DEBUG Processing 235/675 atomic regions from SNP 70359 to 70959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,223 DEBUG Processing 604/720 atomic regions from SNP 181155 to 181755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,353 DEBUG Processing 17/658 atomic regions from SNP 4816 to 5417 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,413 DEBUG Processing 328/704 atomic regions from SNP 98246 to 98846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,426 DEBUG Processing 236/675 atomic regions from SNP 70659 to 71259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,460 DEBUG Processing 605/720 atomic regions from SNP 181455 to 182055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,580 DEBUG Processing 18/658 atomic regions from SNP 5117 to 5718 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,658 DEBUG Processing 237/675 atomic regions from SNP 70959 to 71559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,684 DEBUG Processing 606/720 atomic regions from SNP 181755 to 182355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,689 DEBUG Processing 329/704 atomic regions from SNP 98546 to 99146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:24,798 DEBUG Processing 19/658 atomic regions from SNP 5418 to 6019 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:24,889 DEBUG Processing 238/675 atomic regions from SNP 71259 to 71859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:24,918 DEBUG Processing 607/720 atomic regions from SNP 182055 to 182655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:24,942 DEBUG Processing 330/704 atomic regions from SNP 98846 to 99446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,019 DEBUG Processing 20/658 atomic regions from SNP 5719 to 6320 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,119 DEBUG Processing 239/675 atomic regions from SNP 71559 to 72159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,171 DEBUG Processing 608/720 atomic regions from SNP 182355 to 182955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,210 DEBUG Processing 331/704 atomic regions from SNP 99146 to 99746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,244 DEBUG Processing 21/658 atomic regions from SNP 6020 to 6621 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,349 DEBUG Processing 240/675 atomic regions from SNP 71859 to 72459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,412 DEBUG Processing 609/720 atomic regions from SNP 182655 to 183255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,471 DEBUG Processing 332/704 atomic regions from SNP 99446 to 100046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,473 DEBUG Processing 22/658 atomic regions from SNP 6321 to 6922 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,614 DEBUG Processing 241/675 atomic regions from SNP 72159 to 72759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,658 DEBUG Processing 610/720 atomic regions from SNP 182955 to 183555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,711 DEBUG Processing 23/658 atomic regions from SNP 6622 to 7223 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,744 DEBUG Processing 333/704 atomic regions from SNP 99746 to 100346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:25,861 DEBUG Processing 242/675 atomic regions from SNP 72459 to 73059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:25,917 DEBUG Processing 611/720 atomic regions from SNP 183255 to 183855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:25,945 DEBUG Processing 24/658 atomic regions from SNP 6923 to 7524 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:25,991 DEBUG Processing 334/704 atomic regions from SNP 100046 to 100646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,094 DEBUG Processing 243/675 atomic regions from SNP 72759 to 73359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,168 DEBUG Processing 25/658 atomic regions from SNP 7224 to 7825 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,180 DEBUG Processing 612/720 atomic regions from SNP 183555 to 184155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,234 DEBUG Processing 335/704 atomic regions from SNP 100346 to 100946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,314 DEBUG Processing 244/675 atomic regions from SNP 73059 to 73659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,391 DEBUG Processing 26/658 atomic regions from SNP 7525 to 8126 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,435 DEBUG Processing 613/720 atomic regions from SNP 183855 to 184455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,471 DEBUG Processing 336/704 atomic regions from SNP 100646 to 101246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,540 DEBUG Processing 245/675 atomic regions from SNP 73359 to 73959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,616 DEBUG Processing 27/658 atomic regions from SNP 7826 to 8427 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,670 DEBUG Processing 614/720 atomic regions from SNP 184155 to 184755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,710 DEBUG Processing 337/704 atomic regions from SNP 100946 to 101546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,770 DEBUG Processing 246/675 atomic regions from SNP 73659 to 74259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:26,836 DEBUG Processing 28/658 atomic regions from SNP 8127 to 8728 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:26,891 DEBUG Processing 615/720 atomic regions from SNP 184455 to 185055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:26,948 DEBUG Processing 338/704 atomic regions from SNP 101246 to 101846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:26,997 DEBUG Processing 247/675 atomic regions from SNP 73959 to 74559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,057 DEBUG Processing 29/658 atomic regions from SNP 8428 to 9029 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,138 DEBUG Processing 616/720 atomic regions from SNP 184755 to 185355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,184 DEBUG Processing 339/704 atomic regions from SNP 101546 to 102146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,250 DEBUG Processing 248/675 atomic regions from SNP 74259 to 74859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,281 DEBUG Processing 30/658 atomic regions from SNP 8729 to 9330 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,358 DEBUG Processing 617/720 atomic regions from SNP 185055 to 185655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,432 DEBUG Processing 340/704 atomic regions from SNP 101846 to 102446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,504 DEBUG Processing 31/658 atomic regions from SNP 9030 to 9631 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,507 DEBUG Processing 249/675 atomic regions from SNP 74559 to 75159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,596 DEBUG Processing 618/720 atomic regions from SNP 185355 to 185955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,674 DEBUG Processing 341/704 atomic regions from SNP 102146 to 102746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,732 DEBUG Processing 32/658 atomic regions from SNP 9331 to 9932 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:27,736 DEBUG Processing 250/675 atomic regions from SNP 74859 to 75459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,841 DEBUG Processing 619/720 atomic regions from SNP 185655 to 186255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:27,910 DEBUG Processing 342/704 atomic regions from SNP 102446 to 103046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:27,963 DEBUG Processing 251/675 atomic regions from SNP 75159 to 75759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:27,986 DEBUG Processing 33/658 atomic regions from SNP 9632 to 10233 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,107 DEBUG Processing 620/720 atomic regions from SNP 185955 to 186555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,176 DEBUG Processing 343/704 atomic regions from SNP 102746 to 103346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,197 DEBUG Processing 252/675 atomic regions from SNP 75459 to 76059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,225 DEBUG Processing 34/658 atomic regions from SNP 9933 to 10534 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,374 DEBUG Processing 621/720 atomic regions from SNP 186255 to 186855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,430 DEBUG Processing 253/675 atomic regions from SNP 75759 to 76359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,434 DEBUG Processing 344/704 atomic regions from SNP 103046 to 103646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,448 DEBUG Processing 35/658 atomic regions from SNP 10234 to 10835 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,635 DEBUG Processing 622/720 atomic regions from SNP 186555 to 187155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,669 DEBUG Processing 36/658 atomic regions from SNP 10535 to 11136 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,669 DEBUG Processing 254/675 atomic regions from SNP 76059 to 76659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,670 DEBUG Processing 345/704 atomic regions from SNP 103346 to 103946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:28,895 DEBUG Processing 37/658 atomic regions from SNP 10836 to 11437 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:28,902 DEBUG Processing 255/675 atomic regions from SNP 76359 to 76959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:28,905 DEBUG Processing 623/720 atomic regions from SNP 186855 to 187455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:28,909 DEBUG Processing 346/704 atomic regions from SNP 103646 to 104246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,116 DEBUG Processing 38/658 atomic regions from SNP 11137 to 11738 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,142 DEBUG Processing 347/704 atomic regions from SNP 103946 to 104546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,153 DEBUG Processing 256/675 atomic regions from SNP 76659 to 77259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,155 DEBUG Processing 624/720 atomic regions from SNP 187155 to 187755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,338 DEBUG Processing 39/658 atomic regions from SNP 11438 to 12039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,385 DEBUG Processing 348/704 atomic regions from SNP 104246 to 104846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,395 DEBUG Processing 257/675 atomic regions from SNP 76959 to 77559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,407 DEBUG Processing 625/720 atomic regions from SNP 187455 to 188055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,555 DEBUG Processing 40/658 atomic regions from SNP 11739 to 12339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,626 DEBUG Processing 349/704 atomic regions from SNP 104546 to 105146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,626 DEBUG Processing 258/675 atomic regions from SNP 77259 to 77859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,657 DEBUG Processing 626/720 atomic regions from SNP 187755 to 188355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,775 DEBUG Processing 41/658 atomic regions from SNP 12039 to 12639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:29,871 DEBUG Processing 259/675 atomic regions from SNP 77559 to 78159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:29,874 DEBUG Processing 350/704 atomic regions from SNP 104846 to 105446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:29,906 DEBUG Processing 627/720 atomic regions from SNP 188055 to 188655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:29,995 DEBUG Processing 42/658 atomic regions from SNP 12339 to 12939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,110 DEBUG Processing 260/675 atomic regions from SNP 77859 to 78459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,124 DEBUG Processing 351/704 atomic regions from SNP 105146 to 105746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,161 DEBUG Processing 628/720 atomic regions from SNP 188355 to 188955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,220 DEBUG Processing 43/658 atomic regions from SNP 12639 to 13239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,340 DEBUG Processing 261/675 atomic regions from SNP 78159 to 78759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,364 DEBUG Processing 352/704 atomic regions from SNP 105446 to 106046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,422 DEBUG Processing 629/720 atomic regions from SNP 188655 to 189255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,443 DEBUG Processing 44/658 atomic regions from SNP 12939 to 13539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,569 DEBUG Processing 262/675 atomic regions from SNP 78459 to 79059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,605 DEBUG Processing 353/704 atomic regions from SNP 105746 to 106346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,658 DEBUG Processing 630/720 atomic regions from SNP 188955 to 189555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:30,665 DEBUG Processing 45/658 atomic regions from SNP 13239 to 13839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,784 DEBUG Processing 263/675 atomic regions from SNP 78759 to 79359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:30,837 DEBUG Processing 354/704 atomic regions from SNP 106046 to 106646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:30,891 DEBUG Processing 46/658 atomic regions from SNP 13539 to 14139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:30,892 DEBUG Processing 631/720 atomic regions from SNP 189255 to 189855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,008 DEBUG Processing 264/675 atomic regions from SNP 79059 to 79659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,077 DEBUG Processing 355/704 atomic regions from SNP 106346 to 106946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,123 DEBUG Processing 47/658 atomic regions from SNP 13839 to 14439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,130 DEBUG Processing 632/720 atomic regions from SNP 189555 to 190155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,272 DEBUG Processing 265/675 atomic regions from SNP 79359 to 79959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,317 DEBUG Processing 356/704 atomic regions from SNP 106646 to 107246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,351 DEBUG Processing 48/658 atomic regions from SNP 14139 to 14739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,376 DEBUG Processing 633/720 atomic regions from SNP 189855 to 190455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,507 DEBUG Processing 266/675 atomic regions from SNP 79659 to 80259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,561 DEBUG Processing 357/704 atomic regions from SNP 106946 to 107546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,582 DEBUG Processing 49/658 atomic regions from SNP 14439 to 15039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,623 DEBUG Processing 634/720 atomic regions from SNP 190155 to 190755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:31,767 DEBUG Processing 267/675 atomic regions from SNP 79959 to 80559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:31,804 DEBUG Processing 358/704 atomic regions from SNP 107246 to 107846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:31,812 DEBUG Processing 50/658 atomic regions from SNP 14739 to 15339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:31,871 DEBUG Processing 635/720 atomic regions from SNP 190455 to 191055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,026 DEBUG Processing 268/675 atomic regions from SNP 80259 to 80859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,038 DEBUG Processing 51/658 atomic regions from SNP 15039 to 15639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,040 DEBUG Processing 359/704 atomic regions from SNP 107546 to 108146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,130 DEBUG Processing 636/720 atomic regions from SNP 190755 to 191355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,259 DEBUG Processing 52/658 atomic regions from SNP 15339 to 15939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,272 DEBUG Processing 360/704 atomic regions from SNP 107846 to 108446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,281 DEBUG Processing 269/675 atomic regions from SNP 80559 to 81159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,399 DEBUG Processing 637/720 atomic regions from SNP 191055 to 191655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,487 DEBUG Processing 53/658 atomic regions from SNP 15639 to 16239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,511 DEBUG Processing 361/704 atomic regions from SNP 108146 to 108746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,542 DEBUG Processing 270/675 atomic regions from SNP 80859 to 81459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,670 DEBUG Processing 638/720 atomic regions from SNP 191355 to 191955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,712 DEBUG Processing 54/658 atomic regions from SNP 15939 to 16539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,744 DEBUG Processing 362/704 atomic regions from SNP 108446 to 109046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:32,785 DEBUG Processing 271/675 atomic regions from SNP 81159 to 81759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:32,950 DEBUG Processing 639/720 atomic regions from SNP 191655 to 192255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:32,962 DEBUG Processing 55/658 atomic regions from SNP 16239 to 16839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:32,987 DEBUG Processing 363/704 atomic regions from SNP 108746 to 109346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,029 DEBUG Processing 272/675 atomic regions from SNP 81459 to 82059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,203 DEBUG Processing 56/658 atomic regions from SNP 16539 to 17139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,208 DEBUG Processing 640/720 atomic regions from SNP 191955 to 192555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,236 DEBUG Processing 364/704 atomic regions from SNP 109046 to 109646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,271 DEBUG Processing 273/675 atomic regions from SNP 81759 to 82359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,439 DEBUG Processing 57/658 atomic regions from SNP 16839 to 17439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,462 DEBUG Processing 641/720 atomic regions from SNP 192255 to 192855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,484 DEBUG Processing 365/704 atomic regions from SNP 109346 to 109946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,507 DEBUG Processing 274/675 atomic regions from SNP 82059 to 82659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,670 DEBUG Processing 58/658 atomic regions from SNP 17139 to 17739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,700 DEBUG Processing 642/720 atomic regions from SNP 192555 to 193155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,734 DEBUG Processing 366/704 atomic regions from SNP 109646 to 110246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,744 DEBUG Processing 275/675 atomic regions from SNP 82359 to 82959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:33,900 DEBUG Processing 59/658 atomic regions from SNP 17439 to 18039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:33,939 DEBUG Processing 643/720 atomic regions from SNP 192855 to 193455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:33,987 DEBUG Processing 367/704 atomic regions from SNP 109946 to 110546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:33,987 DEBUG Processing 276/675 atomic regions from SNP 82659 to 83259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,128 DEBUG Processing 60/658 atomic regions from SNP 17739 to 18339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,174 DEBUG Processing 644/720 atomic regions from SNP 193155 to 193755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,230 DEBUG Processing 277/675 atomic regions from SNP 82959 to 83559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,238 DEBUG Processing 368/704 atomic regions from SNP 110246 to 110846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,353 DEBUG Processing 61/658 atomic regions from SNP 18039 to 18639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,399 DEBUG Processing 645/720 atomic regions from SNP 193455 to 194055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,487 DEBUG Processing 369/704 atomic regions from SNP 110546 to 111146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,492 DEBUG Processing 278/675 atomic regions from SNP 83259 to 83859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,587 DEBUG Processing 62/658 atomic regions from SNP 18339 to 18939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,633 DEBUG Processing 646/720 atomic regions from SNP 193755 to 194355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,740 DEBUG Processing 370/704 atomic regions from SNP 110846 to 111446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:34,742 DEBUG Processing 279/675 atomic regions from SNP 83559 to 84159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,829 DEBUG Processing 63/658 atomic regions from SNP 18639 to 19239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:34,856 DEBUG Processing 647/720 atomic regions from SNP 194055 to 194655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:34,975 DEBUG Processing 280/675 atomic regions from SNP 83859 to 84459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:34,981 DEBUG Processing 371/704 atomic regions from SNP 111146 to 111746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,066 DEBUG Processing 64/658 atomic regions from SNP 18939 to 19539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,084 DEBUG Processing 648/720 atomic regions from SNP 194355 to 194955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,216 DEBUG Processing 281/675 atomic regions from SNP 84159 to 84759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,222 DEBUG Processing 372/704 atomic regions from SNP 111446 to 112046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,301 DEBUG Processing 65/658 atomic regions from SNP 19239 to 19839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,314 DEBUG Processing 649/720 atomic regions from SNP 194655 to 195255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,467 DEBUG Processing 373/704 atomic regions from SNP 111746 to 112346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,473 DEBUG Processing 282/675 atomic regions from SNP 84459 to 85059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,534 DEBUG Processing 66/658 atomic regions from SNP 19539 to 20139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,544 DEBUG Processing 650/720 atomic regions from SNP 194955 to 195555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,708 DEBUG Processing 374/704 atomic regions from SNP 112046 to 112646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,735 DEBUG Processing 283/675 atomic regions from SNP 84759 to 85359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,768 DEBUG Processing 67/658 atomic regions from SNP 19839 to 20439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:35,784 DEBUG Processing 651/720 atomic regions from SNP 195255 to 195855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:35,944 DEBUG Processing 375/704 atomic regions from SNP 112346 to 112946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:35,968 DEBUG Processing 284/675 atomic regions from SNP 85059 to 85659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:35,993 DEBUG Processing 68/658 atomic regions from SNP 20139 to 20739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,019 DEBUG Processing 652/720 atomic regions from SNP 195555 to 196155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,180 DEBUG Processing 376/704 atomic regions from SNP 112646 to 113246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,196 DEBUG Processing 285/675 atomic regions from SNP 85359 to 85959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,220 DEBUG Processing 69/658 atomic regions from SNP 20439 to 21039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,250 DEBUG Processing 653/720 atomic regions from SNP 195855 to 196455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,421 DEBUG Processing 377/704 atomic regions from SNP 112946 to 113546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,427 DEBUG Processing 286/675 atomic regions from SNP 85659 to 86259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,446 DEBUG Processing 70/658 atomic regions from SNP 20739 to 21339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,488 DEBUG Processing 654/720 atomic regions from SNP 196155 to 196755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,659 DEBUG Processing 287/675 atomic regions from SNP 85959 to 86559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,664 DEBUG Processing 378/704 atomic regions from SNP 113246 to 113846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,677 DEBUG Processing 71/658 atomic regions from SNP 21039 to 21639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,729 DEBUG Processing 655/720 atomic regions from SNP 196455 to 197055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:36,892 DEBUG Processing 288/675 atomic regions from SNP 86259 to 86859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:36,904 DEBUG Processing 72/658 atomic regions from SNP 21339 to 21939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:36,911 DEBUG Processing 379/704 atomic regions from SNP 113546 to 114146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:36,961 DEBUG Processing 656/720 atomic regions from SNP 196755 to 197355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,126 DEBUG Processing 289/675 atomic regions from SNP 86559 to 87159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,130 DEBUG Processing 73/658 atomic regions from SNP 21639 to 22239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,154 DEBUG Processing 380/704 atomic regions from SNP 113846 to 114446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,188 DEBUG Processing 657/720 atomic regions from SNP 197055 to 197655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,354 DEBUG Processing 290/675 atomic regions from SNP 86859 to 87459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,356 DEBUG Processing 74/658 atomic regions from SNP 21939 to 22539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,394 DEBUG Processing 381/704 atomic regions from SNP 114146 to 114746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,446 DEBUG Processing 658/720 atomic regions from SNP 197355 to 197955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,579 DEBUG Processing 75/658 atomic regions from SNP 22239 to 22839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,583 DEBUG Processing 291/675 atomic regions from SNP 87159 to 87759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,656 DEBUG Processing 382/704 atomic regions from SNP 114446 to 115046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,694 DEBUG Processing 659/720 atomic regions from SNP 197655 to 198255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:37,798 DEBUG Processing 76/658 atomic regions from SNP 22539 to 23139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:37,806 DEBUG Processing 292/675 atomic regions from SNP 87459 to 88059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:37,915 DEBUG Processing 383/704 atomic regions from SNP 114746 to 115346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:37,931 DEBUG Processing 660/720 atomic regions from SNP 197955 to 198555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,018 DEBUG Processing 77/658 atomic regions from SNP 22839 to 23439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,028 DEBUG Processing 293/675 atomic regions from SNP 87759 to 88359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,170 DEBUG Processing 384/704 atomic regions from SNP 115046 to 115646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,181 DEBUG Processing 661/720 atomic regions from SNP 198255 to 198855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,246 DEBUG Processing 78/658 atomic regions from SNP 23139 to 23739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,259 DEBUG Processing 294/675 atomic regions from SNP 88059 to 88659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,421 DEBUG Processing 662/720 atomic regions from SNP 198555 to 199155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,425 DEBUG Processing 385/704 atomic regions from SNP 115346 to 115946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,472 DEBUG Processing 79/658 atomic regions from SNP 23439 to 24039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,491 DEBUG Processing 295/675 atomic regions from SNP 88359 to 88959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,661 DEBUG Processing 663/720 atomic regions from SNP 198855 to 199455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,691 DEBUG Processing 386/704 atomic regions from SNP 115646 to 116246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:38,702 DEBUG Processing 80/658 atomic regions from SNP 23739 to 24339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,725 DEBUG Processing 296/675 atomic regions from SNP 88659 to 89259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,891 DEBUG Processing 664/720 atomic regions from SNP 199155 to 199755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:38,941 DEBUG Processing 81/658 atomic regions from SNP 24039 to 24639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:38,966 DEBUG Processing 297/675 atomic regions from SNP 88959 to 89559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:38,979 DEBUG Processing 387/704 atomic regions from SNP 115946 to 116546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,123 DEBUG Processing 665/720 atomic regions from SNP 199455 to 200055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,183 DEBUG Processing 82/658 atomic regions from SNP 24339 to 24939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,220 DEBUG Processing 298/675 atomic regions from SNP 89259 to 89859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,272 DEBUG chr15: Estimating proportion of background vs signal 2025-01-31 09:55:39,273 DEBUG Processing 388/704 atomic regions from SNP 116246 to 116846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,351 DEBUG Processing 666/720 atomic regions from SNP 199755 to 200355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,402 DEBUG Processing 83/658 atomic regions from SNP 24639 to 25239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,464 DEBUG Processing 299/675 atomic regions from SNP 89559 to 90159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,548 DEBUG Processing 389/704 atomic regions from SNP 116546 to 117146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,580 DEBUG Processing 667/720 atomic regions from SNP 200055 to 200655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,622 DEBUG Processing 84/658 atomic regions from SNP 24939 to 25539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:39,732 DEBUG Processing 300/675 atomic regions from SNP 89859 to 90459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:39,811 DEBUG Processing 668/720 atomic regions from SNP 200355 to 200955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:39,811 DEBUG Processing 390/704 atomic regions from SNP 116846 to 117446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:39,870 DEBUG Processing 85/658 atomic regions from SNP 25239 to 25839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,003 DEBUG Processing 301/675 atomic regions from SNP 90159 to 90759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,044 DEBUG Processing 669/720 atomic regions from SNP 200655 to 201255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,069 DEBUG Processing 391/704 atomic regions from SNP 117146 to 117746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,117 DEBUG Processing 86/658 atomic regions from SNP 25539 to 26139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,262 DEBUG Processing 302/675 atomic regions from SNP 90459 to 91059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,276 DEBUG Processing 670/720 atomic regions from SNP 200955 to 201555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,343 DEBUG Processing 392/704 atomic regions from SNP 117446 to 118046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,367 DEBUG Processing 87/658 atomic regions from SNP 25839 to 26439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,510 DEBUG Processing 671/720 atomic regions from SNP 201255 to 201855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,519 DEBUG Processing 303/675 atomic regions from SNP 90759 to 91359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,594 DEBUG Processing 88/658 atomic regions from SNP 26139 to 26739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,620 DEBUG Processing 393/704 atomic regions from SNP 117746 to 118346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,738 DEBUG Processing 672/720 atomic regions from SNP 201555 to 202155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:40,781 DEBUG Processing 304/675 atomic regions from SNP 91059 to 91659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:40,824 DEBUG Processing 89/658 atomic regions from SNP 26439 to 27039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:40,871 DEBUG Processing 394/704 atomic regions from SNP 118046 to 118646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:40,968 DEBUG Processing 673/720 atomic regions from SNP 201855 to 202455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,047 DEBUG Processing 305/675 atomic regions from SNP 91359 to 91959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,064 DEBUG Processing 90/658 atomic regions from SNP 26739 to 27339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,115 DEBUG Processing 395/704 atomic regions from SNP 118346 to 118946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,212 DEBUG Processing 674/720 atomic regions from SNP 202155 to 202755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,297 DEBUG Processing 91/658 atomic regions from SNP 27039 to 27639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,325 DEBUG Processing 306/675 atomic regions from SNP 91659 to 92259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,357 DEBUG Processing 396/704 atomic regions from SNP 118646 to 119246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,436 DEBUG Processing 675/720 atomic regions from SNP 202455 to 203055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,522 DEBUG Processing 92/658 atomic regions from SNP 27339 to 27939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,595 DEBUG Processing 307/675 atomic regions from SNP 91959 to 92559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,598 DEBUG Processing 397/704 atomic regions from SNP 118946 to 119546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,657 DEBUG Processing 676/720 atomic regions from SNP 202755 to 203355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,745 DEBUG Processing 93/658 atomic regions from SNP 27639 to 28239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:41,849 DEBUG Processing 398/704 atomic regions from SNP 119246 to 119846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:41,855 DEBUG Processing 308/675 atomic regions from SNP 92259 to 92859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:41,886 DEBUG Processing 677/720 atomic regions from SNP 203055 to 203655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:41,973 DEBUG Processing 94/658 atomic regions from SNP 27939 to 28539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,100 DEBUG Processing 399/704 atomic regions from SNP 119546 to 120146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,105 DEBUG Processing 309/675 atomic regions from SNP 92559 to 93159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,118 DEBUG Processing 678/720 atomic regions from SNP 203355 to 203955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,206 DEBUG Processing 95/658 atomic regions from SNP 28239 to 28839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,348 DEBUG Processing 310/675 atomic regions from SNP 92859 to 93459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,353 DEBUG Processing 679/720 atomic regions from SNP 203655 to 204255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,358 DEBUG Processing 400/704 atomic regions from SNP 119846 to 120446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,439 DEBUG Processing 96/658 atomic regions from SNP 28539 to 29139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,582 DEBUG Processing 311/675 atomic regions from SNP 93159 to 93759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,584 DEBUG Processing 680/720 atomic regions from SNP 203955 to 204555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,604 DEBUG Processing 401/704 atomic regions from SNP 120146 to 120746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,681 DEBUG Processing 97/658 atomic regions from SNP 28839 to 29439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:42,817 DEBUG Processing 312/675 atomic regions from SNP 93459 to 94059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:42,822 DEBUG Processing 681/720 atomic regions from SNP 204255 to 204855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:42,865 DEBUG Processing 402/704 atomic regions from SNP 120446 to 121046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:42,924 DEBUG Processing 98/658 atomic regions from SNP 29139 to 29739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,061 DEBUG Processing 313/675 atomic regions from SNP 93759 to 94359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,065 DEBUG Processing 682/720 atomic regions from SNP 204555 to 205155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,140 DEBUG Processing 403/704 atomic regions from SNP 120746 to 121346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,153 DEBUG Processing 99/658 atomic regions from SNP 29439 to 30039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,292 DEBUG Processing 314/675 atomic regions from SNP 94059 to 94659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,296 DEBUG Processing 683/720 atomic regions from SNP 204855 to 205455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,377 DEBUG Processing 100/658 atomic regions from SNP 29739 to 30339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,394 DEBUG Processing 404/704 atomic regions from SNP 121046 to 121646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,525 DEBUG Processing 315/675 atomic regions from SNP 94359 to 94959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,528 DEBUG Processing 684/720 atomic regions from SNP 205155 to 205755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,618 DEBUG Processing 101/658 atomic regions from SNP 30039 to 30639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,624 DEBUG Processing 405/704 atomic regions from SNP 121346 to 121946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,753 DEBUG Processing 316/675 atomic regions from SNP 94659 to 95259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,754 DEBUG Processing 685/720 atomic regions from SNP 205455 to 206055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:43,855 DEBUG Processing 406/704 atomic regions from SNP 121646 to 122246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:43,879 DEBUG Processing 102/658 atomic regions from SNP 30339 to 30939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:43,986 DEBUG Processing 317/675 atomic regions from SNP 94959 to 95559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:43,995 DEBUG Processing 686/720 atomic regions from SNP 205755 to 206355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,113 DEBUG Processing 407/704 atomic regions from SNP 121946 to 122546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,128 DEBUG Processing 103/658 atomic regions from SNP 30639 to 31239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,225 DEBUG Processing 318/675 atomic regions from SNP 95259 to 95859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,230 DEBUG Processing 687/720 atomic regions from SNP 206055 to 206655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,361 DEBUG Processing 408/704 atomic regions from SNP 122246 to 122846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,372 DEBUG Processing 104/658 atomic regions from SNP 30939 to 31539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,460 DEBUG Processing 319/675 atomic regions from SNP 95559 to 96159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,461 DEBUG Processing 688/720 atomic regions from SNP 206355 to 206955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,595 DEBUG Processing 409/704 atomic regions from SNP 122546 to 123146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,625 DEBUG Processing 105/658 atomic regions from SNP 31239 to 31839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,696 DEBUG Processing 320/675 atomic regions from SNP 95859 to 96459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:44,699 DEBUG Processing 689/720 atomic regions from SNP 206655 to 207255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,846 DEBUG Processing 410/704 atomic regions from SNP 122846 to 123446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:44,869 DEBUG Processing 106/658 atomic regions from SNP 31539 to 32139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:44,933 DEBUG Processing 690/720 atomic regions from SNP 206955 to 207555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:44,936 DEBUG Processing 321/675 atomic regions from SNP 96159 to 96759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,076 DEBUG Processing 411/704 atomic regions from SNP 123146 to 123746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,090 DEBUG Processing 107/658 atomic regions from SNP 31839 to 32439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,178 DEBUG Processing 322/675 atomic regions from SNP 96459 to 97059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,179 DEBUG Processing 691/720 atomic regions from SNP 207255 to 207855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,308 DEBUG Processing 412/704 atomic regions from SNP 123446 to 124046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,309 DEBUG Processing 108/658 atomic regions from SNP 32139 to 32739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,424 DEBUG Processing 692/720 atomic regions from SNP 207555 to 208155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,441 DEBUG Processing 323/675 atomic regions from SNP 96759 to 97359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,531 DEBUG Processing 109/658 atomic regions from SNP 32439 to 33039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,544 DEBUG Processing 413/704 atomic regions from SNP 123746 to 124346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,653 DEBUG Processing 693/720 atomic regions from SNP 207855 to 208455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,702 DEBUG Processing 324/675 atomic regions from SNP 97059 to 97659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,758 DEBUG Processing 110/658 atomic regions from SNP 32739 to 33339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:45,786 DEBUG Processing 414/704 atomic regions from SNP 124046 to 124646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:45,876 DEBUG Processing 694/720 atomic regions from SNP 208155 to 208755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:45,959 DEBUG Processing 325/675 atomic regions from SNP 97359 to 97959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:45,985 DEBUG Processing 111/658 atomic regions from SNP 33039 to 33639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,025 DEBUG Processing 415/704 atomic regions from SNP 124346 to 124946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,094 DEBUG Processing 695/720 atomic regions from SNP 208455 to 209055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,198 DEBUG Processing 326/675 atomic regions from SNP 97659 to 98259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,214 DEBUG Processing 112/658 atomic regions from SNP 33339 to 33939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,263 DEBUG Processing 416/704 atomic regions from SNP 124646 to 125246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,347 DEBUG Processing 696/720 atomic regions from SNP 208755 to 209355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,441 DEBUG Processing 327/675 atomic regions from SNP 97959 to 98559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,448 DEBUG Processing 113/658 atomic regions from SNP 33639 to 34239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,533 DEBUG Processing 417/704 atomic regions from SNP 124946 to 125546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,582 DEBUG Processing 697/720 atomic regions from SNP 209055 to 209655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,680 DEBUG Processing 114/658 atomic regions from SNP 33939 to 34539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,690 DEBUG Processing 328/675 atomic regions from SNP 98259 to 98859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:46,784 DEBUG Processing 418/704 atomic regions from SNP 125246 to 125846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:46,820 DEBUG Processing 698/720 atomic regions from SNP 209355 to 209955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:46,920 DEBUG Processing 115/658 atomic regions from SNP 34239 to 34839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:46,932 DEBUG Processing 329/675 atomic regions from SNP 98559 to 99159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,043 DEBUG Processing 419/704 atomic regions from SNP 125546 to 126146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,069 DEBUG Processing 699/720 atomic regions from SNP 209655 to 210255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,153 DEBUG Processing 116/658 atomic regions from SNP 34539 to 35139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,168 DEBUG Processing 330/675 atomic regions from SNP 98859 to 99459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,305 DEBUG Processing 700/720 atomic regions from SNP 209955 to 210555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,312 DEBUG Processing 420/704 atomic regions from SNP 125846 to 126446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,382 DEBUG Processing 117/658 atomic regions from SNP 34839 to 35439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,410 DEBUG Processing 331/675 atomic regions from SNP 99159 to 99759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,553 DEBUG Processing 701/720 atomic regions from SNP 210255 to 210855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,581 DEBUG Processing 421/704 atomic regions from SNP 126146 to 126746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,606 DEBUG Processing 118/658 atomic regions from SNP 35139 to 35739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,659 DEBUG Processing 332/675 atomic regions from SNP 99459 to 100059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:47,790 DEBUG Processing 702/720 atomic regions from SNP 210555 to 211155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:47,828 DEBUG Processing 119/658 atomic regions from SNP 35439 to 36039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:47,850 DEBUG Processing 422/704 atomic regions from SNP 126446 to 127046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:47,923 DEBUG Processing 333/675 atomic regions from SNP 99759 to 100359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,038 DEBUG Processing 703/720 atomic regions from SNP 210855 to 211455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,050 DEBUG Processing 120/658 atomic regions from SNP 35739 to 36339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,103 DEBUG Processing 423/704 atomic regions from SNP 126746 to 127346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,173 DEBUG Processing 334/675 atomic regions from SNP 100059 to 100659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,272 DEBUG Processing 121/658 atomic regions from SNP 36039 to 36639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,295 DEBUG Processing 704/720 atomic regions from SNP 211155 to 211755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,368 DEBUG Processing 424/704 atomic regions from SNP 127046 to 127646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,404 DEBUG Processing 335/675 atomic regions from SNP 100359 to 100959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,505 DEBUG Processing 122/658 atomic regions from SNP 36339 to 36939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,528 DEBUG Processing 705/720 atomic regions from SNP 211455 to 212055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,606 DEBUG Processing 425/704 atomic regions from SNP 127346 to 127946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,630 DEBUG Processing 336/675 atomic regions from SNP 100659 to 101259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,726 DEBUG Processing 123/658 atomic regions from SNP 36639 to 37239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:48,776 DEBUG Processing 706/720 atomic regions from SNP 211755 to 212355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:48,850 DEBUG Processing 426/704 atomic regions from SNP 127646 to 128246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:48,863 DEBUG Processing 337/675 atomic regions from SNP 100959 to 101559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:48,950 DEBUG Processing 124/658 atomic regions from SNP 36939 to 37539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,023 DEBUG Processing 707/720 atomic regions from SNP 212055 to 212655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,083 DEBUG Processing 338/675 atomic regions from SNP 101259 to 101859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,087 DEBUG Processing 427/704 atomic regions from SNP 127946 to 128546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,172 DEBUG Processing 125/658 atomic regions from SNP 37239 to 37839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,257 DEBUG Processing 708/720 atomic regions from SNP 212355 to 212955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,306 DEBUG Processing 339/675 atomic regions from SNP 101559 to 102159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,320 DEBUG Processing 428/704 atomic regions from SNP 128246 to 128846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,412 DEBUG Processing 126/658 atomic regions from SNP 37539 to 38139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,494 DEBUG Processing 709/720 atomic regions from SNP 212655 to 213255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,540 DEBUG Processing 340/675 atomic regions from SNP 101859 to 102459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,561 DEBUG Processing 429/704 atomic regions from SNP 128546 to 129146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,668 DEBUG Processing 127/658 atomic regions from SNP 37839 to 38439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,734 DEBUG Processing 710/720 atomic regions from SNP 212955 to 213555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,772 DEBUG Processing 341/675 atomic regions from SNP 102159 to 102759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:49,801 DEBUG Processing 430/704 atomic regions from SNP 128846 to 129446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:49,916 DEBUG Processing 128/658 atomic regions from SNP 38139 to 38739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:49,964 DEBUG Processing 711/720 atomic regions from SNP 213255 to 213855 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:49,999 DEBUG Processing 342/675 atomic regions from SNP 102459 to 103059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,032 DEBUG Processing 431/704 atomic regions from SNP 129146 to 129746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,146 DEBUG Processing 129/658 atomic regions from SNP 38439 to 39039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,192 DEBUG Processing 712/720 atomic regions from SNP 213555 to 214155 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,237 DEBUG Processing 343/675 atomic regions from SNP 102759 to 103359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,277 DEBUG Processing 432/704 atomic regions from SNP 129446 to 130046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,382 DEBUG Processing 130/658 atomic regions from SNP 38739 to 39339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,433 DEBUG Processing 713/720 atomic regions from SNP 213855 to 214455 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,478 DEBUG Processing 344/675 atomic regions from SNP 103059 to 103659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,549 DEBUG Processing 433/704 atomic regions from SNP 129746 to 130346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,615 DEBUG Processing 131/658 atomic regions from SNP 39039 to 39639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,671 DEBUG Processing 714/720 atomic regions from SNP 214155 to 214755 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,720 DEBUG Processing 345/675 atomic regions from SNP 103359 to 103959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:50,837 DEBUG Processing 434/704 atomic regions from SNP 130046 to 130646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:50,854 DEBUG Processing 132/658 atomic regions from SNP 39339 to 39939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:50,919 DEBUG Processing 715/720 atomic regions from SNP 214455 to 215055 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:50,958 DEBUG Processing 346/675 atomic regions from SNP 103659 to 104259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,084 DEBUG Processing 133/658 atomic regions from SNP 39639 to 40239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,106 DEBUG Processing 435/704 atomic regions from SNP 130346 to 130946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,170 DEBUG Processing 716/720 atomic regions from SNP 214755 to 215355 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,191 DEBUG Processing 347/675 atomic regions from SNP 103959 to 104559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,309 DEBUG Processing 134/658 atomic regions from SNP 39939 to 40539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,366 DEBUG Processing 436/704 atomic regions from SNP 130646 to 131246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,414 DEBUG Processing 717/720 atomic regions from SNP 215055 to 215655 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,420 DEBUG Processing 348/675 atomic regions from SNP 104259 to 104859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,529 DEBUG Processing 135/658 atomic regions from SNP 40239 to 40839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,641 DEBUG Processing 437/704 atomic regions from SNP 130946 to 131546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,642 DEBUG Processing 718/720 atomic regions from SNP 215355 to 215955 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,666 DEBUG Processing 349/675 atomic regions from SNP 104559 to 105159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,757 DEBUG Processing 136/658 atomic regions from SNP 40539 to 41139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:51,870 DEBUG Processing 719/720 atomic regions from SNP 215655 to 216255 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:51,915 DEBUG Processing 438/704 atomic regions from SNP 131246 to 131846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:51,925 DEBUG Processing 350/675 atomic regions from SNP 104859 to 105459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:51,985 DEBUG Processing 137/658 atomic regions from SNP 40839 to 41439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,099 DEBUG Processing 720/720 atomic regions from SNP 215955 to 216555 for chr9 (subchromosome 1 of 1). 2025-01-31 09:55:52,175 DEBUG Processing 351/675 atomic regions from SNP 105159 to 105759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,196 DEBUG Processing 439/704 atomic regions from SNP 131546 to 132146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,213 DEBUG Processing 138/658 atomic regions from SNP 41139 to 41739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,255 DEBUG Unique SNPs positions in subchromosome 1: 216556 2025-01-31 09:55:52,435 DEBUG Processing 352/675 atomic regions from SNP 105459 to 106059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,442 DEBUG Processing 139/658 atomic regions from SNP 41439 to 42039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,460 DEBUG Processing 440/704 atomic regions from SNP 131846 to 132446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,671 DEBUG Processing 140/658 atomic regions from SNP 41739 to 42339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,683 DEBUG Processing 353/675 atomic regions from SNP 105759 to 106359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,702 DEBUG Processing 441/704 atomic regions from SNP 132146 to 132746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:52,899 DEBUG Processing 141/658 atomic regions from SNP 42039 to 42639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:52,938 DEBUG Processing 354/675 atomic regions from SNP 106059 to 106659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:52,947 DEBUG Processing 442/704 atomic regions from SNP 132446 to 133046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,128 DEBUG Processing 142/658 atomic regions from SNP 42339 to 42939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,189 DEBUG Processing 355/675 atomic regions from SNP 106359 to 106959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,194 DEBUG Processing 443/704 atomic regions from SNP 132746 to 133346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,351 DEBUG Processing 143/658 atomic regions from SNP 42639 to 43239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,438 DEBUG Processing 444/704 atomic regions from SNP 133046 to 133646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,445 DEBUG Processing 356/675 atomic regions from SNP 106659 to 107259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,577 DEBUG Processing 144/658 atomic regions from SNP 42939 to 43539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,674 DEBUG Processing 445/704 atomic regions from SNP 133346 to 133946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,696 DEBUG Processing 357/675 atomic regions from SNP 106959 to 107559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:53,801 DEBUG Processing 145/658 atomic regions from SNP 43239 to 43839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:53,858 DEBUG chr15:0-104043685: Signal thresholds approximated 2025-01-31 09:55:53,860 DEBUG chr15: Signal quantile: 0.991. signal threshold: 17. Best RMSEA: 0.014 2025-01-31 09:55:53,933 DEBUG Processing 446/704 atomic regions from SNP 133646 to 134246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:53,956 DEBUG Processing 358/675 atomic regions from SNP 107259 to 107859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,033 DEBUG Processing 146/658 atomic regions from SNP 43539 to 44139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,183 DEBUG Processing 359/675 atomic regions from SNP 107559 to 108159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,195 DEBUG Processing 447/704 atomic regions from SNP 133946 to 134546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,268 DEBUG Processing 147/658 atomic regions from SNP 43839 to 44439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,409 DEBUG Processing 360/675 atomic regions from SNP 107859 to 108459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,452 DEBUG Processing 448/704 atomic regions from SNP 134246 to 134846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,518 DEBUG Processing 148/658 atomic regions from SNP 44139 to 44739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,632 DEBUG Processing 361/675 atomic regions from SNP 108159 to 108759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,701 DEBUG Processing 449/704 atomic regions from SNP 134546 to 135146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,752 DEBUG Processing 149/658 atomic regions from SNP 44439 to 45039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:54,885 DEBUG Processing 362/675 atomic regions from SNP 108459 to 109059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:54,946 DEBUG Processing 450/704 atomic regions from SNP 134846 to 135446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:54,976 DEBUG Processing 150/658 atomic regions from SNP 44739 to 45339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,125 DEBUG Processing 363/675 atomic regions from SNP 108759 to 109359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,189 DEBUG Processing 451/704 atomic regions from SNP 135146 to 135746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,207 DEBUG Processing 151/658 atomic regions from SNP 45039 to 45639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,345 DEBUG Processing 364/675 atomic regions from SNP 109059 to 109659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,429 DEBUG Processing 452/704 atomic regions from SNP 135446 to 136046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,442 DEBUG Processing 152/658 atomic regions from SNP 45339 to 45939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,570 DEBUG Processing 365/675 atomic regions from SNP 109359 to 109959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,671 DEBUG Processing 453/704 atomic regions from SNP 135746 to 136346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,678 DEBUG Processing 153/658 atomic regions from SNP 45639 to 46239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:55,796 DEBUG Processing 366/675 atomic regions from SNP 109659 to 110259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:55,861 DEBUG chr15 total SNP count: 178519 2025-01-31 09:55:55,861 DEBUG chr15 length: 104043685 2025-01-31 09:55:55,861 DEBUG ----------------------------------------- 2025-01-31 09:55:55,861 INFO Processing SNPs in chr15 2025-01-31 09:55:55,916 DEBUG Processing 454/704 atomic regions from SNP 136046 to 136646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:55,927 DEBUG Processing 154/658 atomic regions from SNP 45939 to 46539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,018 DEBUG Processing 367/675 atomic regions from SNP 109959 to 110559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,052 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 178519)] 2025-01-31 09:55:56,152 DEBUG Processing 455/704 atomic regions from SNP 136346 to 136946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,173 DEBUG Processing 155/658 atomic regions from SNP 46239 to 46839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,182 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:55:56,243 DEBUG Processing 368/675 atomic regions from SNP 110259 to 110859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,383 DEBUG Processing 456/704 atomic regions from SNP 136646 to 137246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,409 DEBUG Processing 156/658 atomic regions from SNP 46539 to 47139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,468 DEBUG Processing 369/675 atomic regions from SNP 110559 to 111159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,613 DEBUG Processing 457/704 atomic regions from SNP 136946 to 137546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,620 DEBUG Processing 157/658 atomic regions from SNP 46839 to 47439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,685 DEBUG Processing 370/675 atomic regions from SNP 110859 to 111459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:56,842 DEBUG Processing 158/658 atomic regions from SNP 47139 to 47739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:56,849 DEBUG Processing 458/704 atomic regions from SNP 137246 to 137846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:56,908 DEBUG Processing 371/675 atomic regions from SNP 111159 to 111759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,065 DEBUG Processing 159/658 atomic regions from SNP 47439 to 48039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,084 DEBUG Processing 459/704 atomic regions from SNP 137546 to 138146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,131 DEBUG Processing 372/675 atomic regions from SNP 111459 to 112059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,291 DEBUG Processing 160/658 atomic regions from SNP 47739 to 48339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,325 DEBUG Processing 460/704 atomic regions from SNP 137846 to 138446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,371 DEBUG Processing 373/675 atomic regions from SNP 111759 to 112359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,517 DEBUG Processing 161/658 atomic regions from SNP 48039 to 48639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,575 DEBUG Processing 461/704 atomic regions from SNP 138146 to 138746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,597 DEBUG Processing 374/675 atomic regions from SNP 112059 to 112659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,738 DEBUG Processing 162/658 atomic regions from SNP 48339 to 48939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:57,818 DEBUG Processing 462/704 atomic regions from SNP 138446 to 139046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:57,825 DEBUG Processing 375/675 atomic regions from SNP 112359 to 112959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:57,957 DEBUG Processing 163/658 atomic regions from SNP 48639 to 49239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,054 DEBUG Processing 376/675 atomic regions from SNP 112659 to 113259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,058 DEBUG Processing 463/704 atomic regions from SNP 138746 to 139346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,169 DEBUG Processing 164/658 atomic regions from SNP 48939 to 49539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,290 DEBUG Processing 464/704 atomic regions from SNP 139046 to 139646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,299 DEBUG Processing 377/675 atomic regions from SNP 112959 to 113559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,386 DEBUG Processing 165/658 atomic regions from SNP 49239 to 49839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,525 DEBUG Processing 465/704 atomic regions from SNP 139346 to 139946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,557 DEBUG Processing 378/675 atomic regions from SNP 113259 to 113859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,611 DEBUG Processing 166/658 atomic regions from SNP 49539 to 50139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:58,766 DEBUG Processing 466/704 atomic regions from SNP 139646 to 140246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:58,794 DEBUG Processing 379/675 atomic regions from SNP 113559 to 114159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:58,839 DEBUG Processing 167/658 atomic regions from SNP 49839 to 50439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,027 DEBUG Processing 467/704 atomic regions from SNP 139946 to 140546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,029 DEBUG Processing 380/675 atomic regions from SNP 113859 to 114459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,074 DEBUG Processing 168/658 atomic regions from SNP 50139 to 50739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,261 DEBUG Processing 381/675 atomic regions from SNP 114159 to 114759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,273 DEBUG Processing 468/704 atomic regions from SNP 140246 to 140846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,305 DEBUG Processing 169/658 atomic regions from SNP 50439 to 51039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,491 DEBUG chr16: Estimating proportion of background vs signal 2025-01-31 09:55:59,496 DEBUG Processing 382/675 atomic regions from SNP 114459 to 115059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,532 DEBUG Processing 469/704 atomic regions from SNP 140546 to 141146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,532 DEBUG Processing 170/658 atomic regions from SNP 50739 to 51339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,725 DEBUG Processing 383/675 atomic regions from SNP 114759 to 115359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,764 DEBUG Processing 171/658 atomic regions from SNP 51039 to 51639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:55:59,777 DEBUG Processing 470/704 atomic regions from SNP 140846 to 141446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:55:59,956 DEBUG Processing 384/675 atomic regions from SNP 115059 to 115659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:55:59,995 DEBUG Processing 172/658 atomic regions from SNP 51339 to 51939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,022 DEBUG Processing 471/704 atomic regions from SNP 141146 to 141746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,182 DEBUG Processing 385/675 atomic regions from SNP 115359 to 115959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,221 DEBUG Processing 173/658 atomic regions from SNP 51639 to 52239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,261 DEBUG Processing 472/704 atomic regions from SNP 141446 to 142046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,415 DEBUG Processing 386/675 atomic regions from SNP 115659 to 116259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,454 DEBUG Processing 174/658 atomic regions from SNP 51939 to 52539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,518 DEBUG Processing 473/704 atomic regions from SNP 141746 to 142346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,652 DEBUG Processing 387/675 atomic regions from SNP 115959 to 116559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,680 DEBUG Processing 175/658 atomic regions from SNP 52239 to 52839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:00,767 DEBUG Processing 474/704 atomic regions from SNP 142046 to 142646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:00,881 DEBUG Processing 388/675 atomic regions from SNP 116259 to 116859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:00,902 DEBUG Processing 176/658 atomic regions from SNP 52539 to 53139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,004 DEBUG Processing 475/704 atomic regions from SNP 142346 to 142946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,117 DEBUG Processing 389/675 atomic regions from SNP 116559 to 117159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,133 DEBUG Processing 177/658 atomic regions from SNP 52839 to 53439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,216 DEBUG Subchromosome time: 209.50534325407352, subchromosome SNPs: 216556 2025-01-31 09:56:01,217 DEBUG Estimated BADs: [0.56, 1.68, 0.56, 10.10, 1.68, 0.84, 1.68, 0.56, 1.68, 0.42, 11.79, 1.68, 10.10, 1.68, 5.05, 1.68, 5.05, 1.68, 0.84, 3.37, 0.42, 1.68, 6.74, 3.37, 1.68, 3.37] SNP counts: [16713, 3546, 8606, 3444, 5998, 9658, 3897, 3467, 4688, 4798, 112, 6169, 949, 22683, 5515, 2895, 10652, 22167, 18466, 745, 6686, 21494, 4617, 6785, 12568, 9238] SNP IDs counts: [16713, 3546, 8606, 3444, 5998, 9658, 3897, 3467, 4688, 4798, 112, 6169, 949, 22683, 5515, 2895, 10652, 22167, 18466, 745, 6686, 21494, 4617, 6785, 12568, 9238] Critical gap: 599661bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 13.24Mbp, 15.25Mbp, 20.48Mbp, 22.31Mbp, 25.69Mbp, 31.03Mbp, 33.14Mbp, 35.10Mbp, 37.82Mbp, 40.75Mbp, 40.81Mbp, 44.06Mbp, 44.57Mbp, 56.85Mbp, 59.75Mbp, 61.28Mbp, 66.88Mbp, 79.03Mbp, 90.11Mbp, 90.55Mbp, 94.53Mbp, 106.14Mbp, 108.61Mbp, 112.43Mbp, 119.32Mbp, 124.60Mbp] 2025-01-31 09:56:01,217 DEBUG chr9 time: 209.50590268010274 s 2025-01-31 09:56:01,250 DEBUG Processing 476/704 atomic regions from SNP 142646 to 143246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,354 DEBUG chr9: Fitting background model for 26 segments 2025-01-31 09:56:01,363 DEBUG Processing 390/675 atomic regions from SNP 116859 to 117459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,365 DEBUG Processing 178/658 atomic regions from SNP 53139 to 53739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,492 DEBUG Processing 477/704 atomic regions from SNP 142946 to 143546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,591 DEBUG Processing 179/658 atomic regions from SNP 53439 to 54039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,594 DEBUG Processing 391/675 atomic regions from SNP 117159 to 117759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:01,754 DEBUG Processing 478/704 atomic regions from SNP 143246 to 143846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:01,817 DEBUG Processing 180/658 atomic regions from SNP 53739 to 54339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:01,826 DEBUG Processing 392/675 atomic regions from SNP 117459 to 118059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,023 DEBUG Processing 479/704 atomic regions from SNP 143546 to 144146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,049 DEBUG Processing 181/658 atomic regions from SNP 54039 to 54639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,062 DEBUG Processing 393/675 atomic regions from SNP 117759 to 118359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,261 DEBUG Processing 480/704 atomic regions from SNP 143846 to 144446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,278 DEBUG Processing 182/658 atomic regions from SNP 54339 to 54939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,320 DEBUG Processing 394/675 atomic regions from SNP 118059 to 118659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,503 DEBUG Processing 183/658 atomic regions from SNP 54639 to 55239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,516 DEBUG Processing 481/704 atomic regions from SNP 144146 to 144746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,570 DEBUG Processing 395/675 atomic regions from SNP 118359 to 118959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,725 DEBUG Processing 184/658 atomic regions from SNP 54939 to 55539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:02,774 DEBUG Processing 482/704 atomic regions from SNP 144446 to 145046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:02,802 DEBUG Processing 396/675 atomic regions from SNP 118659 to 119259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:02,949 DEBUG Processing 185/658 atomic regions from SNP 55239 to 55839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,017 DEBUG Processing 483/704 atomic regions from SNP 144746 to 145346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,035 DEBUG Processing 397/675 atomic regions from SNP 118959 to 119559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,169 DEBUG Processing 186/658 atomic regions from SNP 55539 to 56139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,275 DEBUG Processing 398/675 atomic regions from SNP 119259 to 119859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,283 DEBUG Processing 484/704 atomic regions from SNP 145046 to 145646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,385 DEBUG Processing 187/658 atomic regions from SNP 55839 to 56439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,504 DEBUG Processing 399/675 atomic regions from SNP 119559 to 120159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,547 DEBUG Processing 485/704 atomic regions from SNP 145346 to 145946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,604 DEBUG Processing 188/658 atomic regions from SNP 56139 to 56739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:03,749 DEBUG Processing 400/675 atomic regions from SNP 119859 to 120459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:03,783 DEBUG Processing 486/704 atomic regions from SNP 145646 to 146246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:03,826 DEBUG Processing 189/658 atomic regions from SNP 56439 to 57039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,014 DEBUG Processing 401/675 atomic regions from SNP 120159 to 120759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,024 DEBUG Processing 487/704 atomic regions from SNP 145946 to 146546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,054 DEBUG Processing 190/658 atomic regions from SNP 56739 to 57339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,276 DEBUG Processing 488/704 atomic regions from SNP 146246 to 146846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,285 DEBUG Processing 402/675 atomic regions from SNP 120459 to 121059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,286 DEBUG Processing 191/658 atomic regions from SNP 57039 to 57639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,511 DEBUG Processing 192/658 atomic regions from SNP 57339 to 57939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,515 DEBUG Processing 489/704 atomic regions from SNP 146546 to 147146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,544 DEBUG Processing 403/675 atomic regions from SNP 120759 to 121359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,734 DEBUG Processing 193/658 atomic regions from SNP 57639 to 58239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:04,760 DEBUG Processing 490/704 atomic regions from SNP 146846 to 147446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:04,803 DEBUG Processing 404/675 atomic regions from SNP 121059 to 121659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:04,997 DEBUG Processing 194/658 atomic regions from SNP 57939 to 58539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,013 DEBUG Processing 491/704 atomic regions from SNP 147146 to 147746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,076 DEBUG Processing 405/675 atomic regions from SNP 121359 to 121959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,229 DEBUG Processing 195/658 atomic regions from SNP 58239 to 58839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,262 DEBUG Processing 492/704 atomic regions from SNP 147446 to 148046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,328 DEBUG Processing 406/675 atomic regions from SNP 121659 to 122259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,450 DEBUG Processing 196/658 atomic regions from SNP 58539 to 59139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,506 DEBUG Processing 493/704 atomic regions from SNP 147746 to 148346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,594 DEBUG Processing 407/675 atomic regions from SNP 121959 to 122559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,663 DEBUG Processing 197/658 atomic regions from SNP 58839 to 59439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:05,773 DEBUG Processing 494/704 atomic regions from SNP 148046 to 148646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:05,832 DEBUG Processing 408/675 atomic regions from SNP 122259 to 122859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:05,879 DEBUG Processing 198/658 atomic regions from SNP 59139 to 59739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,043 DEBUG Processing 495/704 atomic regions from SNP 148346 to 148946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,095 DEBUG Processing 409/675 atomic regions from SNP 122559 to 123159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,098 DEBUG Processing 199/658 atomic regions from SNP 59439 to 60039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,310 DEBUG Processing 496/704 atomic regions from SNP 148646 to 149246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,323 DEBUG Processing 200/658 atomic regions from SNP 59739 to 60339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,325 DEBUG Processing 410/675 atomic regions from SNP 122859 to 123459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,547 DEBUG Processing 201/658 atomic regions from SNP 60039 to 60639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,558 DEBUG Processing 411/675 atomic regions from SNP 123159 to 123759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,576 DEBUG Processing 497/704 atomic regions from SNP 148946 to 149546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,766 DEBUG Processing 202/658 atomic regions from SNP 60339 to 60939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:06,785 DEBUG Processing 412/675 atomic regions from SNP 123459 to 124059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:06,827 DEBUG Processing 498/704 atomic regions from SNP 149246 to 149846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:06,984 DEBUG Processing 203/658 atomic regions from SNP 60639 to 61239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,010 DEBUG Processing 413/675 atomic regions from SNP 123759 to 124359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,087 DEBUG Processing 499/704 atomic regions from SNP 149546 to 150146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,198 DEBUG Processing 204/658 atomic regions from SNP 60939 to 61539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,233 DEBUG Processing 414/675 atomic regions from SNP 124059 to 124659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,327 DEBUG Processing 500/704 atomic regions from SNP 149846 to 150446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,410 DEBUG Processing 205/658 atomic regions from SNP 61239 to 61839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,469 DEBUG Processing 415/675 atomic regions from SNP 124359 to 124959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,573 DEBUG Processing 501/704 atomic regions from SNP 150146 to 150746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,624 DEBUG Processing 206/658 atomic regions from SNP 61539 to 62139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,698 DEBUG Processing 416/675 atomic regions from SNP 124659 to 125259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:07,814 DEBUG Processing 502/704 atomic regions from SNP 150446 to 151046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:07,844 DEBUG Processing 207/658 atomic regions from SNP 61839 to 62439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:07,917 DEBUG Processing 417/675 atomic regions from SNP 124959 to 125559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,068 DEBUG Processing 208/658 atomic regions from SNP 62139 to 62739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,071 DEBUG Processing 503/704 atomic regions from SNP 150746 to 151346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,137 DEBUG Processing 418/675 atomic regions from SNP 125259 to 125859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,298 DEBUG Processing 209/658 atomic regions from SNP 62439 to 63039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,326 DEBUG Processing 504/704 atomic regions from SNP 151046 to 151646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,362 DEBUG Processing 419/675 atomic regions from SNP 125559 to 126159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,520 DEBUG Processing 210/658 atomic regions from SNP 62739 to 63339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,572 DEBUG Processing 505/704 atomic regions from SNP 151346 to 151946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,583 DEBUG Processing 420/675 atomic regions from SNP 125859 to 126459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,736 DEBUG Processing 211/658 atomic regions from SNP 63039 to 63639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:08,800 DEBUG Processing 506/704 atomic regions from SNP 151646 to 152246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:08,805 DEBUG Processing 421/675 atomic regions from SNP 126159 to 126759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:08,950 DEBUG Processing 212/658 atomic regions from SNP 63339 to 63939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,021 DEBUG Processing 422/675 atomic regions from SNP 126459 to 127059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,027 DEBUG Processing 507/704 atomic regions from SNP 151946 to 152546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,166 DEBUG Processing 213/658 atomic regions from SNP 63639 to 64239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,239 DEBUG Processing 423/675 atomic regions from SNP 126759 to 127359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,251 DEBUG Processing 508/704 atomic regions from SNP 152246 to 152846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,382 DEBUG Processing 214/658 atomic regions from SNP 63939 to 64539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,458 DEBUG Processing 424/675 atomic regions from SNP 127059 to 127659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,479 DEBUG Processing 509/704 atomic regions from SNP 152546 to 153146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,598 DEBUG Processing 215/658 atomic regions from SNP 64239 to 64839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,678 DEBUG Processing 425/675 atomic regions from SNP 127359 to 127959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,707 DEBUG Processing 510/704 atomic regions from SNP 152846 to 153446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:09,839 DEBUG Processing 216/658 atomic regions from SNP 64539 to 65139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:09,906 DEBUG Processing 426/675 atomic regions from SNP 127659 to 128259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:09,938 DEBUG Processing 511/704 atomic regions from SNP 153146 to 153746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,051 DEBUG Processing 217/658 atomic regions from SNP 64839 to 65439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,132 DEBUG Processing 427/675 atomic regions from SNP 127959 to 128559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,170 DEBUG Processing 512/704 atomic regions from SNP 153446 to 154046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,263 DEBUG Processing 218/658 atomic regions from SNP 65139 to 65739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,354 DEBUG Processing 428/675 atomic regions from SNP 128259 to 128859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,399 DEBUG Processing 513/704 atomic regions from SNP 153746 to 154346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,477 DEBUG Processing 219/658 atomic regions from SNP 65439 to 66039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,613 DEBUG Processing 429/675 atomic regions from SNP 128559 to 129159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,639 DEBUG Processing 514/704 atomic regions from SNP 154046 to 154646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,701 DEBUG Processing 220/658 atomic regions from SNP 65739 to 66339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:10,845 DEBUG Processing 430/675 atomic regions from SNP 128859 to 129459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:10,882 DEBUG Processing 515/704 atomic regions from SNP 154346 to 154946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:10,932 DEBUG Processing 221/658 atomic regions from SNP 66039 to 66639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,078 DEBUG Processing 431/675 atomic regions from SNP 129159 to 129759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,121 DEBUG Processing 516/704 atomic regions from SNP 154646 to 155246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,153 DEBUG Processing 222/658 atomic regions from SNP 66339 to 66939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,314 DEBUG Processing 432/675 atomic regions from SNP 129459 to 130059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,369 DEBUG Processing 517/704 atomic regions from SNP 154946 to 155546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,385 DEBUG Processing 223/658 atomic regions from SNP 66639 to 67239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,542 DEBUG Processing 433/675 atomic regions from SNP 129759 to 130359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,610 DEBUG chr16:0-98207768: Signal thresholds approximated 2025-01-31 09:56:11,611 DEBUG Processing 518/704 atomic regions from SNP 155246 to 155846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,611 DEBUG chr16: Signal quantile: 0.992. signal threshold: 15. Best RMSEA: 0.016 2025-01-31 09:56:11,612 DEBUG Processing 224/658 atomic regions from SNP 66939 to 67539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,761 DEBUG Processing 434/675 atomic regions from SNP 130059 to 130659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:11,838 DEBUG Processing 225/658 atomic regions from SNP 67239 to 67839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:11,863 DEBUG Processing 519/704 atomic regions from SNP 155546 to 156146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:11,976 DEBUG Processing 435/675 atomic regions from SNP 130359 to 130959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,062 DEBUG Processing 226/658 atomic regions from SNP 67539 to 68139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,102 DEBUG Processing 520/704 atomic regions from SNP 155846 to 156446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,198 DEBUG Processing 436/675 atomic regions from SNP 130659 to 131259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,293 DEBUG Processing 227/658 atomic regions from SNP 67839 to 68439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,342 DEBUG Processing 521/704 atomic regions from SNP 156146 to 156746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,419 DEBUG Processing 437/675 atomic regions from SNP 130959 to 131559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,517 DEBUG Processing 228/658 atomic regions from SNP 68139 to 68739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,581 DEBUG Processing 522/704 atomic regions from SNP 156446 to 157046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,642 DEBUG Processing 438/675 atomic regions from SNP 131259 to 131859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,743 DEBUG Processing 229/658 atomic regions from SNP 68439 to 69039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:12,819 DEBUG Processing 523/704 atomic regions from SNP 156746 to 157346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:12,869 DEBUG Processing 439/675 atomic regions from SNP 131559 to 132159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:12,975 DEBUG Processing 230/658 atomic regions from SNP 68739 to 69339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,055 DEBUG Processing 524/704 atomic regions from SNP 157046 to 157646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,089 DEBUG Processing 440/675 atomic regions from SNP 131859 to 132459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,201 DEBUG Processing 231/658 atomic regions from SNP 69039 to 69639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,288 DEBUG Processing 525/704 atomic regions from SNP 157346 to 157946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,310 DEBUG Processing 441/675 atomic regions from SNP 132159 to 132759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,425 DEBUG Processing 232/658 atomic regions from SNP 69339 to 69939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,530 DEBUG Processing 526/704 atomic regions from SNP 157646 to 158246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,538 DEBUG chr16 total SNP count: 167621 2025-01-31 09:56:13,538 DEBUG chr16 length: 98207768 2025-01-31 09:56:13,538 DEBUG ----------------------------------------- 2025-01-31 09:56:13,538 INFO Processing SNPs in chr16 2025-01-31 09:56:13,540 DEBUG Processing 442/675 atomic regions from SNP 132459 to 133059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,651 DEBUG Processing 233/658 atomic regions from SNP 69639 to 70239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:13,723 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 167621)] 2025-01-31 09:56:13,769 DEBUG Processing 527/704 atomic regions from SNP 157946 to 158546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:13,770 DEBUG Processing 443/675 atomic regions from SNP 132759 to 133359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:13,845 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:56:13,866 DEBUG Processing 234/658 atomic regions from SNP 69939 to 70539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,008 DEBUG Processing 528/704 atomic regions from SNP 158246 to 158846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,029 DEBUG Processing 444/675 atomic regions from SNP 133059 to 133659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,076 DEBUG Processing 235/658 atomic regions from SNP 70239 to 70839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,239 DEBUG Processing 529/704 atomic regions from SNP 158546 to 159146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,265 DEBUG Processing 445/675 atomic regions from SNP 133359 to 133959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,291 DEBUG Processing 236/658 atomic regions from SNP 70539 to 71139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,470 DEBUG Processing 530/704 atomic regions from SNP 158846 to 159446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,497 DEBUG Processing 446/675 atomic regions from SNP 133659 to 134259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,507 DEBUG Processing 237/658 atomic regions from SNP 70839 to 71439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,699 DEBUG Processing 531/704 atomic regions from SNP 159146 to 159746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,718 DEBUG Processing 447/675 atomic regions from SNP 133959 to 134559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:14,723 DEBUG Processing 238/658 atomic regions from SNP 71139 to 71739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,929 DEBUG Processing 532/704 atomic regions from SNP 159446 to 160046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:14,940 DEBUG Processing 239/658 atomic regions from SNP 71439 to 72039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:14,944 DEBUG Processing 448/675 atomic regions from SNP 134259 to 134859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,154 DEBUG Processing 240/658 atomic regions from SNP 71739 to 72339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,155 DEBUG Processing 533/704 atomic regions from SNP 159746 to 160346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,205 DEBUG Processing 449/675 atomic regions from SNP 134559 to 135159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,374 DEBUG Processing 241/658 atomic regions from SNP 72039 to 72639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,388 DEBUG Processing 534/704 atomic regions from SNP 160046 to 160646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,456 DEBUG Processing 450/675 atomic regions from SNP 134859 to 135459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,603 DEBUG Processing 242/658 atomic regions from SNP 72339 to 72939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,654 DEBUG Processing 535/704 atomic regions from SNP 160346 to 160946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:15,675 DEBUG Processing 451/675 atomic regions from SNP 135159 to 135759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,830 DEBUG Processing 243/658 atomic regions from SNP 72639 to 73239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:15,897 DEBUG Processing 452/675 atomic regions from SNP 135459 to 136059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:15,909 DEBUG Processing 536/704 atomic regions from SNP 160646 to 161246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,063 DEBUG Processing 244/658 atomic regions from SNP 72939 to 73539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,116 DEBUG Processing 453/675 atomic regions from SNP 135759 to 136359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,153 DEBUG Processing 537/704 atomic regions from SNP 160946 to 161546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,284 DEBUG Processing 245/658 atomic regions from SNP 73239 to 73839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,335 DEBUG Processing 454/675 atomic regions from SNP 136059 to 136659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,383 DEBUG Processing 538/704 atomic regions from SNP 161246 to 161846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,506 DEBUG Processing 246/658 atomic regions from SNP 73539 to 74139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,558 DEBUG Processing 455/675 atomic regions from SNP 136359 to 136959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,616 DEBUG Processing 539/704 atomic regions from SNP 161546 to 162146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,722 DEBUG Processing 247/658 atomic regions from SNP 73839 to 74439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:16,781 DEBUG Processing 456/675 atomic regions from SNP 136659 to 137259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:16,867 DEBUG Processing 540/704 atomic regions from SNP 161846 to 162446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:16,936 DEBUG Processing 248/658 atomic regions from SNP 74139 to 74739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,004 DEBUG Processing 457/675 atomic regions from SNP 136959 to 137559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,104 DEBUG Processing 541/704 atomic regions from SNP 162146 to 162746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,147 DEBUG Processing 249/658 atomic regions from SNP 74439 to 75039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,222 DEBUG Processing 458/675 atomic regions from SNP 137259 to 137859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,362 DEBUG Processing 542/704 atomic regions from SNP 162446 to 163046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,365 DEBUG Processing 250/658 atomic regions from SNP 74739 to 75339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,445 DEBUG Processing 459/675 atomic regions from SNP 137559 to 138159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,579 DEBUG Processing 251/658 atomic regions from SNP 75039 to 75639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,593 DEBUG Processing 543/704 atomic regions from SNP 162746 to 163346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,666 DEBUG Processing 460/675 atomic regions from SNP 137859 to 138459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:17,789 DEBUG Processing 252/658 atomic regions from SNP 75339 to 75939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:17,839 DEBUG Processing 544/704 atomic regions from SNP 163046 to 163646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:17,914 DEBUG Processing 461/675 atomic regions from SNP 138159 to 138759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,003 DEBUG Processing 253/658 atomic regions from SNP 75639 to 76239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,099 DEBUG Processing 545/704 atomic regions from SNP 163346 to 163946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,163 DEBUG Processing 462/675 atomic regions from SNP 138459 to 139059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,216 DEBUG Processing 254/658 atomic regions from SNP 75939 to 76539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,354 DEBUG Processing 546/704 atomic regions from SNP 163646 to 164246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,390 DEBUG Processing 463/675 atomic regions from SNP 138759 to 139359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,429 DEBUG Processing 255/658 atomic regions from SNP 76239 to 76839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,608 DEBUG Processing 547/704 atomic regions from SNP 163946 to 164546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,621 DEBUG Processing 464/675 atomic regions from SNP 139059 to 139659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,648 DEBUG Processing 256/658 atomic regions from SNP 76539 to 77139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,851 DEBUG Processing 548/704 atomic regions from SNP 164246 to 164846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:18,854 DEBUG Processing 465/675 atomic regions from SNP 139359 to 139959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:18,878 DEBUG Processing 257/658 atomic regions from SNP 76839 to 77439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:18,932 DEBUG Segmenting atomic regions: 2025-01-31 09:56:19,016 DEBUG Processing 1/594 atomic regions from SNP 0 to 601 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,085 DEBUG Processing 466/675 atomic regions from SNP 139659 to 140259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,093 DEBUG Processing 549/704 atomic regions from SNP 164546 to 165146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,121 DEBUG Processing 258/658 atomic regions from SNP 77139 to 77739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,237 DEBUG Processing 2/594 atomic regions from SNP 301 to 902 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,321 DEBUG Processing 467/675 atomic regions from SNP 139959 to 140559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,336 DEBUG Processing 550/704 atomic regions from SNP 164846 to 165446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,380 DEBUG Processing 259/658 atomic regions from SNP 77439 to 78039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,448 DEBUG Processing 3/594 atomic regions from SNP 602 to 1203 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,552 DEBUG Processing 468/675 atomic regions from SNP 140259 to 140859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,581 DEBUG Processing 551/704 atomic regions from SNP 165146 to 165746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,623 DEBUG Processing 260/658 atomic regions from SNP 77739 to 78339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,660 DEBUG Processing 4/594 atomic regions from SNP 903 to 1504 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:19,781 DEBUG Processing 469/675 atomic regions from SNP 140559 to 141159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:19,861 DEBUG Processing 261/658 atomic regions from SNP 78039 to 78639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:19,865 DEBUG Processing 552/704 atomic regions from SNP 165446 to 166046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:19,877 DEBUG Processing 5/594 atomic regions from SNP 1204 to 1805 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,007 DEBUG Processing 470/675 atomic regions from SNP 140859 to 141459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,089 DEBUG Processing 262/658 atomic regions from SNP 78339 to 78939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,126 DEBUG Processing 6/594 atomic regions from SNP 1505 to 2106 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,139 DEBUG Processing 553/704 atomic regions from SNP 165746 to 166346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,232 DEBUG Processing 471/675 atomic regions from SNP 141159 to 141759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,338 DEBUG Processing 263/658 atomic regions from SNP 78639 to 79239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,346 DEBUG Processing 7/594 atomic regions from SNP 1806 to 2407 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,402 DEBUG Processing 554/704 atomic regions from SNP 166046 to 166646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,459 DEBUG Processing 472/675 atomic regions from SNP 141459 to 142059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,562 DEBUG Processing 8/594 atomic regions from SNP 2107 to 2708 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,570 DEBUG Processing 264/658 atomic regions from SNP 78939 to 79539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,679 DEBUG Processing 555/704 atomic regions from SNP 166346 to 166946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:20,698 DEBUG Processing 473/675 atomic regions from SNP 141759 to 142359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,787 DEBUG Processing 9/594 atomic regions from SNP 2408 to 3009 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:20,802 DEBUG Processing 265/658 atomic regions from SNP 79239 to 79839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:20,933 DEBUG Processing 474/675 atomic regions from SNP 142059 to 142659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:20,953 DEBUG Processing 556/704 atomic regions from SNP 166646 to 167246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,010 DEBUG Processing 10/594 atomic regions from SNP 2709 to 3310 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,027 DEBUG Processing 266/658 atomic regions from SNP 79539 to 80139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,167 DEBUG Processing 475/675 atomic regions from SNP 142359 to 142959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,246 DEBUG Processing 11/594 atomic regions from SNP 3010 to 3611 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,246 DEBUG Processing 557/704 atomic regions from SNP 166946 to 167546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,267 DEBUG Processing 267/658 atomic regions from SNP 79839 to 80439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,400 DEBUG Processing 476/675 atomic regions from SNP 142659 to 143259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,496 DEBUG Processing 268/658 atomic regions from SNP 80139 to 80739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,499 DEBUG Processing 12/594 atomic regions from SNP 3311 to 3912 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,523 DEBUG Processing 558/704 atomic regions from SNP 167246 to 167846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,627 DEBUG Processing 477/675 atomic regions from SNP 142959 to 143559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,728 DEBUG Processing 269/658 atomic regions from SNP 80439 to 81039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,765 DEBUG Processing 13/594 atomic regions from SNP 3612 to 4213 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:21,798 DEBUG Processing 559/704 atomic regions from SNP 167546 to 168146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:21,859 DEBUG Processing 478/675 atomic regions from SNP 143259 to 143859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:21,952 DEBUG Processing 270/658 atomic regions from SNP 80739 to 81339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:21,997 DEBUG Processing 14/594 atomic regions from SNP 3913 to 4514 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,063 DEBUG Processing 560/704 atomic regions from SNP 167846 to 168446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,085 DEBUG Processing 479/675 atomic regions from SNP 143559 to 144159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,171 DEBUG Processing 271/658 atomic regions from SNP 81039 to 81639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,215 DEBUG Processing 15/594 atomic regions from SNP 4214 to 4815 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,314 DEBUG Processing 480/675 atomic regions from SNP 143859 to 144459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,321 DEBUG Processing 561/704 atomic regions from SNP 168146 to 168746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,394 DEBUG Processing 272/658 atomic regions from SNP 81339 to 81939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,428 DEBUG Processing 16/594 atomic regions from SNP 4515 to 5116 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,542 DEBUG Processing 481/675 atomic regions from SNP 144159 to 144759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,583 DEBUG Processing 562/704 atomic regions from SNP 168446 to 169046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,621 DEBUG Processing 273/658 atomic regions from SNP 81639 to 82239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,648 DEBUG Processing 17/594 atomic regions from SNP 4816 to 5417 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,768 DEBUG Processing 482/675 atomic regions from SNP 144459 to 145059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:22,859 DEBUG Processing 563/704 atomic regions from SNP 168746 to 169346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:22,869 DEBUG Processing 274/658 atomic regions from SNP 81939 to 82539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:22,877 DEBUG Processing 18/594 atomic regions from SNP 5117 to 5718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:22,994 DEBUG Processing 483/675 atomic regions from SNP 144759 to 145359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,096 DEBUG Processing 275/658 atomic regions from SNP 82239 to 82839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,102 DEBUG Processing 19/594 atomic regions from SNP 5418 to 6018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,136 DEBUG Processing 564/704 atomic regions from SNP 169046 to 169646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,217 DEBUG Processing 484/675 atomic regions from SNP 145059 to 145659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,324 DEBUG Processing 276/658 atomic regions from SNP 82539 to 83139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,330 DEBUG Processing 20/594 atomic regions from SNP 5718 to 6318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,419 DEBUG Processing 565/704 atomic regions from SNP 169346 to 169946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,440 DEBUG Processing 485/675 atomic regions from SNP 145359 to 145959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,572 DEBUG Processing 21/594 atomic regions from SNP 6018 to 6618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,576 DEBUG Processing 277/658 atomic regions from SNP 82839 to 83439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,656 DEBUG Processing 566/704 atomic regions from SNP 169646 to 170246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,668 DEBUG Processing 486/675 atomic regions from SNP 145659 to 146259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:23,815 DEBUG Processing 278/658 atomic regions from SNP 83139 to 83739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:23,821 DEBUG Processing 22/594 atomic regions from SNP 6318 to 6918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:23,894 DEBUG Processing 567/704 atomic regions from SNP 169946 to 170546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:23,895 DEBUG Processing 487/675 atomic regions from SNP 145959 to 146559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,057 DEBUG Processing 23/594 atomic regions from SNP 6618 to 7218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,065 DEBUG Processing 279/658 atomic regions from SNP 83439 to 84039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,124 DEBUG Processing 488/675 atomic regions from SNP 146259 to 146859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,135 DEBUG Processing 568/704 atomic regions from SNP 170246 to 170846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,291 DEBUG Processing 24/594 atomic regions from SNP 6918 to 7518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,317 DEBUG Processing 280/658 atomic regions from SNP 83739 to 84339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,358 DEBUG Processing 489/675 atomic regions from SNP 146559 to 147159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,389 DEBUG Processing 569/704 atomic regions from SNP 170546 to 171146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,526 DEBUG Processing 25/594 atomic regions from SNP 7218 to 7818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,563 DEBUG Processing 281/658 atomic regions from SNP 84039 to 84639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,596 DEBUG Processing 490/675 atomic regions from SNP 146859 to 147459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,638 DEBUG Processing 570/704 atomic regions from SNP 170846 to 171446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,750 DEBUG Processing 26/594 atomic regions from SNP 7518 to 8118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:24,789 DEBUG Processing 282/658 atomic regions from SNP 84339 to 84939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:24,829 DEBUG Processing 491/675 atomic regions from SNP 147159 to 147759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:24,880 DEBUG Processing 571/704 atomic regions from SNP 171146 to 171746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:24,971 DEBUG Processing 27/594 atomic regions from SNP 7818 to 8418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,014 DEBUG Processing 283/658 atomic regions from SNP 84639 to 85239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,059 DEBUG Processing 492/675 atomic regions from SNP 147459 to 148059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,133 DEBUG Processing 572/704 atomic regions from SNP 171446 to 172046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,207 DEBUG Processing 28/594 atomic regions from SNP 8118 to 8718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,254 DEBUG Processing 284/658 atomic regions from SNP 84939 to 85539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,305 DEBUG Processing 493/675 atomic regions from SNP 147759 to 148359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,399 DEBUG Processing 573/704 atomic regions from SNP 171746 to 172346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,451 DEBUG Processing 29/594 atomic regions from SNP 8418 to 9018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,479 DEBUG Processing 285/658 atomic regions from SNP 85239 to 85839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,533 DEBUG Processing 494/675 atomic regions from SNP 148059 to 148659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,657 DEBUG Processing 574/704 atomic regions from SNP 172046 to 172646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,695 DEBUG Processing 30/594 atomic regions from SNP 8718 to 9318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,706 DEBUG Processing 286/658 atomic regions from SNP 85539 to 86139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,760 DEBUG Processing 495/675 atomic regions from SNP 148359 to 148959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:25,922 DEBUG Processing 575/704 atomic regions from SNP 172346 to 172946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:25,935 DEBUG Processing 287/658 atomic regions from SNP 85839 to 86439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:25,952 DEBUG Processing 31/594 atomic regions from SNP 9018 to 9618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:25,994 DEBUG Processing 496/675 atomic regions from SNP 148659 to 149259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,168 DEBUG Processing 288/658 atomic regions from SNP 86139 to 86739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,183 DEBUG Processing 576/704 atomic regions from SNP 172646 to 173246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,213 DEBUG Processing 32/594 atomic regions from SNP 9318 to 9918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,233 DEBUG Processing 497/675 atomic regions from SNP 148959 to 149559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,393 DEBUG Processing 289/658 atomic regions from SNP 86439 to 87039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,449 DEBUG Processing 577/704 atomic regions from SNP 172946 to 173546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,471 DEBUG Processing 498/675 atomic regions from SNP 149259 to 149859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,474 DEBUG Processing 33/594 atomic regions from SNP 9618 to 10218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,614 DEBUG Processing 290/658 atomic regions from SNP 86739 to 87339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,712 DEBUG Processing 499/675 atomic regions from SNP 149559 to 150159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,737 DEBUG Processing 578/704 atomic regions from SNP 173246 to 173846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:26,738 DEBUG Processing 34/594 atomic regions from SNP 9918 to 10518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:26,834 DEBUG Processing 291/658 atomic regions from SNP 87039 to 87639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:26,946 DEBUG Processing 500/675 atomic regions from SNP 149859 to 150459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:26,990 DEBUG Processing 35/594 atomic regions from SNP 10218 to 10818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,020 DEBUG Processing 579/704 atomic regions from SNP 173546 to 174146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,066 DEBUG Processing 292/658 atomic regions from SNP 87339 to 87939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,179 DEBUG Processing 501/675 atomic regions from SNP 150159 to 150759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,226 DEBUG Processing 36/594 atomic regions from SNP 10518 to 11118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,285 DEBUG Processing 293/658 atomic regions from SNP 87639 to 88239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,286 DEBUG Processing 580/704 atomic regions from SNP 173846 to 174446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,427 DEBUG Processing 502/675 atomic regions from SNP 150459 to 151059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,462 DEBUG Processing 37/594 atomic regions from SNP 10818 to 11418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,507 DEBUG Processing 294/658 atomic regions from SNP 87939 to 88539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,554 DEBUG Processing 581/704 atomic regions from SNP 174146 to 174746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,658 DEBUG Processing 503/675 atomic regions from SNP 150759 to 151359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,714 DEBUG Processing 38/594 atomic regions from SNP 11118 to 11718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:27,731 DEBUG Processing 295/658 atomic regions from SNP 88239 to 88839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,793 DEBUG Processing 582/704 atomic regions from SNP 174446 to 175046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:27,890 DEBUG Processing 504/675 atomic regions from SNP 151059 to 151659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:27,951 DEBUG Processing 296/658 atomic regions from SNP 88539 to 89139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:27,959 DEBUG Processing 39/594 atomic regions from SNP 11418 to 12018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,045 DEBUG Processing 583/704 atomic regions from SNP 174746 to 175346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,142 DEBUG Processing 505/675 atomic regions from SNP 151359 to 151959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,176 DEBUG Processing 297/658 atomic regions from SNP 88839 to 89439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,186 DEBUG Processing 40/594 atomic regions from SNP 11718 to 12318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,319 DEBUG Processing 584/704 atomic regions from SNP 175046 to 175646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,380 DEBUG Processing 506/675 atomic regions from SNP 151659 to 152259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,403 DEBUG Processing 298/658 atomic regions from SNP 89139 to 89739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,406 DEBUG Processing 41/594 atomic regions from SNP 12018 to 12618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,588 DEBUG Processing 585/704 atomic regions from SNP 175346 to 175946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,613 DEBUG Processing 507/675 atomic regions from SNP 151959 to 152559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,631 DEBUG Processing 42/594 atomic regions from SNP 12318 to 12918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:28,631 DEBUG Processing 299/658 atomic regions from SNP 89439 to 90039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,844 DEBUG Processing 508/675 atomic regions from SNP 152259 to 152859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:28,861 DEBUG Processing 586/704 atomic regions from SNP 175646 to 176246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:28,861 DEBUG Processing 300/658 atomic regions from SNP 89739 to 90339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:28,862 DEBUG Processing 43/594 atomic regions from SNP 12618 to 13218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,075 DEBUG Processing 509/675 atomic regions from SNP 152559 to 153159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,105 DEBUG Processing 587/704 atomic regions from SNP 175946 to 176546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,105 DEBUG Processing 301/658 atomic regions from SNP 90039 to 90639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,119 DEBUG Processing 44/594 atomic regions from SNP 12918 to 13518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,318 DEBUG Processing 510/675 atomic regions from SNP 152859 to 153459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,349 DEBUG Processing 588/704 atomic regions from SNP 176246 to 176846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,354 DEBUG Processing 302/658 atomic regions from SNP 90339 to 90939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,365 DEBUG Processing 45/594 atomic regions from SNP 13218 to 13818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,570 DEBUG Processing 511/675 atomic regions from SNP 153159 to 153759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,583 DEBUG Processing 303/658 atomic regions from SNP 90639 to 91239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,606 DEBUG Processing 589/704 atomic regions from SNP 176546 to 177146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:29,609 DEBUG Processing 46/594 atomic regions from SNP 13518 to 14118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,807 DEBUG Processing 304/658 atomic regions from SNP 90939 to 91539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:29,831 DEBUG Processing 512/675 atomic regions from SNP 153459 to 154059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:29,861 DEBUG Processing 47/594 atomic regions from SNP 13818 to 14418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:29,876 DEBUG Processing 590/704 atomic regions from SNP 176846 to 177446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,030 DEBUG Processing 305/658 atomic regions from SNP 91239 to 91839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,089 DEBUG Processing 513/675 atomic regions from SNP 153759 to 154359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,102 DEBUG Processing 48/594 atomic regions from SNP 14118 to 14718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,138 DEBUG Processing 591/704 atomic regions from SNP 177146 to 177746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,245 DEBUG Processing 306/658 atomic regions from SNP 91539 to 92139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,321 DEBUG Processing 514/675 atomic regions from SNP 154059 to 154659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,351 DEBUG Processing 49/594 atomic regions from SNP 14418 to 15018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,380 DEBUG Processing 592/704 atomic regions from SNP 177446 to 178046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,459 DEBUG Processing 307/658 atomic regions from SNP 91839 to 92439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,551 DEBUG Processing 515/675 atomic regions from SNP 154359 to 154959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,597 DEBUG Processing 50/594 atomic regions from SNP 14718 to 15318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,626 DEBUG Processing 593/704 atomic regions from SNP 177746 to 178346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,678 DEBUG Processing 308/658 atomic regions from SNP 92139 to 92739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:30,796 DEBUG Processing 516/675 atomic regions from SNP 154659 to 155259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:30,837 DEBUG Processing 51/594 atomic regions from SNP 15018 to 15618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:30,876 DEBUG Processing 594/704 atomic regions from SNP 178046 to 178646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:30,912 DEBUG Processing 309/658 atomic regions from SNP 92439 to 93039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,040 DEBUG Processing 517/675 atomic regions from SNP 154959 to 155559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,065 DEBUG Processing 52/594 atomic regions from SNP 15318 to 15918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,118 DEBUG Processing 595/704 atomic regions from SNP 178346 to 178946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,137 DEBUG Processing 310/658 atomic regions from SNP 92739 to 93339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,277 DEBUG Processing 518/675 atomic regions from SNP 155259 to 155859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,311 DEBUG Processing 53/594 atomic regions from SNP 15618 to 16218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,361 DEBUG Processing 596/704 atomic regions from SNP 178646 to 179246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,363 DEBUG Processing 311/658 atomic regions from SNP 93039 to 93639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,504 DEBUG Processing 519/675 atomic regions from SNP 155559 to 156159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,566 DEBUG Processing 54/594 atomic regions from SNP 15918 to 16518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,594 DEBUG Processing 312/658 atomic regions from SNP 93339 to 93939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,607 DEBUG Processing 597/704 atomic regions from SNP 178946 to 179546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,726 DEBUG Processing 520/675 atomic regions from SNP 155859 to 156459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:31,823 DEBUG Processing 55/594 atomic regions from SNP 16218 to 16818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:31,826 DEBUG Processing 313/658 atomic regions from SNP 93639 to 94239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:31,857 DEBUG Processing 598/704 atomic regions from SNP 179246 to 179846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:31,947 DEBUG Processing 521/675 atomic regions from SNP 156159 to 156759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,053 DEBUG Processing 314/658 atomic regions from SNP 93939 to 94539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,079 DEBUG Processing 56/594 atomic regions from SNP 16518 to 17118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,106 DEBUG Processing 599/704 atomic regions from SNP 179546 to 180146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,178 DEBUG Processing 522/675 atomic regions from SNP 156459 to 157059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,270 DEBUG Processing 315/658 atomic regions from SNP 94239 to 94839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,331 DEBUG Processing 57/594 atomic regions from SNP 16818 to 17418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,349 DEBUG Processing 600/704 atomic regions from SNP 179846 to 180446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,413 DEBUG Processing 523/675 atomic regions from SNP 156759 to 157359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,479 DEBUG Processing 316/658 atomic regions from SNP 94539 to 95139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,578 DEBUG Processing 58/594 atomic regions from SNP 17118 to 17718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,589 DEBUG Processing 601/704 atomic regions from SNP 180146 to 180746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,647 DEBUG Processing 524/675 atomic regions from SNP 157059 to 157659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,695 DEBUG Processing 317/658 atomic regions from SNP 94839 to 95439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:32,827 DEBUG Processing 59/594 atomic regions from SNP 17418 to 18018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:32,828 DEBUG Processing 602/704 atomic regions from SNP 180446 to 181046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:32,891 DEBUG Processing 525/675 atomic regions from SNP 157359 to 157959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:32,920 DEBUG Processing 318/658 atomic regions from SNP 95139 to 95739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,066 DEBUG Processing 60/594 atomic regions from SNP 17718 to 18318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,093 DEBUG Processing 603/704 atomic regions from SNP 180746 to 181346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,128 DEBUG Processing 526/675 atomic regions from SNP 157659 to 158259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,149 DEBUG Processing 319/658 atomic regions from SNP 95439 to 96039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,293 DEBUG Processing 61/594 atomic regions from SNP 18018 to 18618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,352 DEBUG Processing 604/704 atomic regions from SNP 181046 to 181646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,364 DEBUG Processing 527/675 atomic regions from SNP 157959 to 158559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,376 DEBUG Processing 320/658 atomic regions from SNP 95739 to 96339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,508 DEBUG Processing 62/594 atomic regions from SNP 18318 to 18918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,599 DEBUG Processing 528/675 atomic regions from SNP 158259 to 158859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,601 DEBUG Processing 605/704 atomic regions from SNP 181346 to 181946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,607 DEBUG Processing 321/658 atomic regions from SNP 96039 to 96639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,718 DEBUG Processing 63/594 atomic regions from SNP 18618 to 19218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:33,832 DEBUG Processing 322/658 atomic regions from SNP 96339 to 96939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:33,836 DEBUG Processing 529/675 atomic regions from SNP 158559 to 159159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:33,842 DEBUG Processing 606/704 atomic regions from SNP 181646 to 182246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:33,928 DEBUG Processing 64/594 atomic regions from SNP 18918 to 19518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,062 DEBUG Processing 323/658 atomic regions from SNP 96639 to 97239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,088 DEBUG Processing 607/704 atomic regions from SNP 181946 to 182546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,091 DEBUG Processing 530/675 atomic regions from SNP 158859 to 159459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,148 DEBUG Processing 65/594 atomic regions from SNP 19218 to 19818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,285 DEBUG Processing 324/658 atomic regions from SNP 96939 to 97539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,344 DEBUG Processing 608/704 atomic regions from SNP 182246 to 182846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,345 DEBUG Processing 531/675 atomic regions from SNP 159159 to 159759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,360 DEBUG Processing 66/594 atomic regions from SNP 19518 to 20118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,504 DEBUG Processing 325/658 atomic regions from SNP 97239 to 97839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,575 DEBUG Processing 67/594 atomic regions from SNP 19818 to 20418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,587 DEBUG Processing 532/675 atomic regions from SNP 159459 to 160059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,614 DEBUG Processing 609/704 atomic regions from SNP 182546 to 183146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,729 DEBUG Processing 326/658 atomic regions from SNP 97539 to 98139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,794 DEBUG Processing 68/594 atomic regions from SNP 20118 to 20718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:34,815 DEBUG Processing 533/675 atomic regions from SNP 159759 to 160359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:34,875 DEBUG Processing 610/704 atomic regions from SNP 182846 to 183446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:34,952 DEBUG Processing 327/658 atomic regions from SNP 97839 to 98439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:34,974 DEBUG Segmenting atomic regions: 2025-01-31 09:56:35,011 DEBUG Processing 69/594 atomic regions from SNP 20418 to 21018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,043 DEBUG Processing 534/675 atomic regions from SNP 160059 to 160659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,052 DEBUG Processing 1/557 atomic regions from SNP 0 to 601 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,122 DEBUG Processing 611/704 atomic regions from SNP 183146 to 183746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,177 DEBUG Processing 328/658 atomic regions from SNP 98139 to 98739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,230 DEBUG Processing 70/594 atomic regions from SNP 20718 to 21318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,265 DEBUG Processing 2/557 atomic regions from SNP 301 to 902 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,273 DEBUG Processing 535/675 atomic regions from SNP 160359 to 160959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,360 DEBUG Processing 612/704 atomic regions from SNP 183446 to 184046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,393 DEBUG Processing 329/658 atomic regions from SNP 98439 to 99039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,444 DEBUG Processing 71/594 atomic regions from SNP 21018 to 21618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,491 DEBUG Processing 3/557 atomic regions from SNP 602 to 1203 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,498 DEBUG Processing 536/675 atomic regions from SNP 160659 to 161259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,590 DEBUG Processing 613/704 atomic regions from SNP 183746 to 184346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,613 DEBUG Processing 330/658 atomic regions from SNP 98739 to 99339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,668 DEBUG Processing 72/594 atomic regions from SNP 21318 to 21918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,731 DEBUG Processing 4/557 atomic regions from SNP 903 to 1504 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,738 DEBUG Processing 537/675 atomic regions from SNP 160959 to 161559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:35,831 DEBUG Processing 331/658 atomic regions from SNP 99039 to 99639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:35,845 DEBUG Processing 614/704 atomic regions from SNP 184046 to 184646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:35,887 DEBUG Processing 73/594 atomic regions from SNP 21618 to 22218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:35,964 DEBUG Processing 5/557 atomic regions from SNP 1204 to 1805 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:35,975 DEBUG Processing 538/675 atomic regions from SNP 161259 to 161859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,051 DEBUG Processing 332/658 atomic regions from SNP 99339 to 99939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,092 DEBUG Processing 615/704 atomic regions from SNP 184346 to 184946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,095 DEBUG Processing 74/594 atomic regions from SNP 21918 to 22518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,181 DEBUG Processing 6/557 atomic regions from SNP 1505 to 2106 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,232 DEBUG Processing 539/675 atomic regions from SNP 161559 to 162159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,273 DEBUG Processing 333/658 atomic regions from SNP 99639 to 100239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,306 DEBUG Processing 75/594 atomic regions from SNP 22218 to 22818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,324 DEBUG Processing 616/704 atomic regions from SNP 184646 to 185246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,419 DEBUG Processing 7/557 atomic regions from SNP 1806 to 2407 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,499 DEBUG Processing 540/675 atomic regions from SNP 161859 to 162459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,520 DEBUG Processing 334/658 atomic regions from SNP 99939 to 100539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,533 DEBUG Processing 76/594 atomic regions from SNP 22518 to 23118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,586 DEBUG Processing 617/704 atomic regions from SNP 184946 to 185546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,660 DEBUG Processing 8/557 atomic regions from SNP 2107 to 2708 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,739 DEBUG Processing 335/658 atomic regions from SNP 100239 to 100839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,747 DEBUG Processing 77/594 atomic regions from SNP 22818 to 23418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,747 DEBUG Processing 541/675 atomic regions from SNP 162159 to 162759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:36,819 DEBUG Processing 618/704 atomic regions from SNP 185246 to 185846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:36,902 DEBUG Processing 9/557 atomic regions from SNP 2408 to 3009 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:36,961 DEBUG Processing 78/594 atomic regions from SNP 23118 to 23718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:36,962 DEBUG Processing 336/658 atomic regions from SNP 100539 to 101139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:36,989 DEBUG Processing 542/675 atomic regions from SNP 162459 to 163059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,051 DEBUG Processing 619/704 atomic regions from SNP 185546 to 186146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,142 DEBUG Processing 10/557 atomic regions from SNP 2709 to 3310 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,175 DEBUG Processing 79/594 atomic regions from SNP 23418 to 24018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,183 DEBUG Processing 337/658 atomic regions from SNP 100839 to 101439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,217 DEBUG Processing 543/675 atomic regions from SNP 162759 to 163359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,281 DEBUG Processing 620/704 atomic regions from SNP 185846 to 186446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,369 DEBUG Processing 11/557 atomic regions from SNP 3010 to 3611 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,389 DEBUG Processing 80/594 atomic regions from SNP 23718 to 24318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,406 DEBUG Processing 338/658 atomic regions from SNP 101139 to 101739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,446 DEBUG Processing 544/675 atomic regions from SNP 163059 to 163659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,511 DEBUG Processing 621/704 atomic regions from SNP 186146 to 186746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,602 DEBUG Processing 81/594 atomic regions from SNP 24018 to 24618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,607 DEBUG Processing 12/557 atomic regions from SNP 3311 to 3912 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,627 DEBUG Processing 339/658 atomic regions from SNP 101439 to 102039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,688 DEBUG Processing 545/675 atomic regions from SNP 163359 to 163959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,745 DEBUG Processing 622/704 atomic regions from SNP 186446 to 187046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:37,811 DEBUG Processing 82/594 atomic regions from SNP 24318 to 24918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:37,826 DEBUG Processing 13/557 atomic regions from SNP 3612 to 4213 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:37,851 DEBUG Processing 340/658 atomic regions from SNP 101739 to 102339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:37,951 DEBUG Processing 546/675 atomic regions from SNP 163659 to 164259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:37,972 DEBUG Processing 623/704 atomic regions from SNP 186746 to 187346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,022 DEBUG Processing 83/594 atomic regions from SNP 24618 to 25218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,034 DEBUG Processing 14/557 atomic regions from SNP 3913 to 4514 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,078 DEBUG Processing 341/658 atomic regions from SNP 102039 to 102639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,208 DEBUG Processing 624/704 atomic regions from SNP 187046 to 187646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,217 DEBUG Processing 547/675 atomic regions from SNP 163959 to 164559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,238 DEBUG Processing 84/594 atomic regions from SNP 24918 to 25518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,248 DEBUG Processing 15/557 atomic regions from SNP 4214 to 4815 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,304 DEBUG Processing 342/658 atomic regions from SNP 102339 to 102939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,443 DEBUG Processing 625/704 atomic regions from SNP 187346 to 187946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,448 DEBUG Processing 548/675 atomic regions from SNP 164259 to 164859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,451 DEBUG Processing 85/594 atomic regions from SNP 25218 to 25818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,456 DEBUG Processing 16/557 atomic regions from SNP 4515 to 5116 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,527 DEBUG Processing 343/658 atomic regions from SNP 102639 to 103239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,669 DEBUG Processing 17/557 atomic regions from SNP 4816 to 5417 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,674 DEBUG Processing 86/594 atomic regions from SNP 25518 to 26118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,683 DEBUG Processing 549/675 atomic regions from SNP 164559 to 165159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,684 DEBUG Processing 626/704 atomic regions from SNP 187646 to 188246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,747 DEBUG Processing 344/658 atomic regions from SNP 102939 to 103539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:38,888 DEBUG Processing 18/557 atomic regions from SNP 5117 to 5718 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:38,894 DEBUG Processing 87/594 atomic regions from SNP 25818 to 26418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:38,932 DEBUG Processing 627/704 atomic regions from SNP 187946 to 188546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:38,942 DEBUG Processing 550/675 atomic regions from SNP 164859 to 165459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:38,967 DEBUG Processing 345/658 atomic regions from SNP 103239 to 103839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,104 DEBUG Processing 19/557 atomic regions from SNP 5418 to 6019 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,114 DEBUG Processing 88/594 atomic regions from SNP 26118 to 26718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,170 DEBUG Processing 628/704 atomic regions from SNP 188246 to 188846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,184 DEBUG Processing 346/658 atomic regions from SNP 103539 to 104139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,198 DEBUG Processing 551/675 atomic regions from SNP 165159 to 165759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,318 DEBUG Processing 20/557 atomic regions from SNP 5719 to 6320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,334 DEBUG Processing 89/594 atomic regions from SNP 26418 to 27018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,403 DEBUG Processing 347/658 atomic regions from SNP 103839 to 104439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,432 DEBUG Processing 629/704 atomic regions from SNP 188546 to 189146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,450 DEBUG Processing 552/675 atomic regions from SNP 165459 to 166059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,533 DEBUG Processing 21/557 atomic regions from SNP 6020 to 6621 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,553 DEBUG Processing 90/594 atomic regions from SNP 26718 to 27318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,623 DEBUG Processing 348/658 atomic regions from SNP 104139 to 104739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,688 DEBUG Processing 553/675 atomic regions from SNP 165759 to 166359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,690 DEBUG Processing 630/704 atomic regions from SNP 188846 to 189446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,750 DEBUG Processing 22/557 atomic regions from SNP 6321 to 6922 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:39,779 DEBUG Processing 91/594 atomic regions from SNP 27018 to 27618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:39,846 DEBUG Processing 349/658 atomic regions from SNP 104439 to 105039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:39,921 DEBUG Processing 631/704 atomic regions from SNP 189146 to 189746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:39,941 DEBUG Processing 554/675 atomic regions from SNP 166059 to 166659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:39,972 DEBUG Processing 23/557 atomic regions from SNP 6622 to 7223 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,010 DEBUG Processing 92/594 atomic regions from SNP 27318 to 27918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,081 DEBUG Processing 350/658 atomic regions from SNP 104739 to 105339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,152 DEBUG Processing 632/704 atomic regions from SNP 189446 to 190046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,163 DEBUG Processing 555/675 atomic regions from SNP 166359 to 166959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,185 DEBUG Processing 24/557 atomic regions from SNP 6923 to 7524 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,231 DEBUG Processing 93/594 atomic regions from SNP 27618 to 28218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,309 DEBUG Processing 351/658 atomic regions from SNP 105039 to 105639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,388 DEBUG Processing 633/704 atomic regions from SNP 189746 to 190346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,391 DEBUG Processing 556/675 atomic regions from SNP 166659 to 167259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,401 DEBUG Processing 25/557 atomic regions from SNP 7224 to 7825 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,457 DEBUG Processing 94/594 atomic regions from SNP 27918 to 28518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,543 DEBUG Processing 352/658 atomic regions from SNP 105339 to 105939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,622 DEBUG Processing 26/557 atomic regions from SNP 7525 to 8126 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,626 DEBUG Processing 557/675 atomic regions from SNP 166959 to 167559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,626 DEBUG Processing 634/704 atomic regions from SNP 190046 to 190646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,672 DEBUG Processing 95/594 atomic regions from SNP 28218 to 28818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:40,781 DEBUG Processing 353/658 atomic regions from SNP 105639 to 106239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:40,852 DEBUG Processing 27/557 atomic regions from SNP 7826 to 8427 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:40,874 DEBUG Processing 558/675 atomic regions from SNP 167259 to 167859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:40,880 DEBUG Processing 635/704 atomic regions from SNP 190346 to 190946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:40,900 DEBUG Processing 96/594 atomic regions from SNP 28518 to 29118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,003 DEBUG Processing 354/658 atomic regions from SNP 105939 to 106539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,064 DEBUG Processing 28/557 atomic regions from SNP 8127 to 8728 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,113 DEBUG Processing 559/675 atomic regions from SNP 167559 to 168159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,117 DEBUG Processing 97/594 atomic regions from SNP 28818 to 29418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,118 DEBUG Processing 636/704 atomic regions from SNP 190646 to 191246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,225 DEBUG Processing 355/658 atomic regions from SNP 106239 to 106839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,279 DEBUG Processing 29/557 atomic regions from SNP 8428 to 9029 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,338 DEBUG Processing 98/594 atomic regions from SNP 29118 to 29718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,350 DEBUG Processing 560/675 atomic regions from SNP 167859 to 168459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,361 DEBUG Processing 637/704 atomic regions from SNP 190946 to 191546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,449 DEBUG Processing 356/658 atomic regions from SNP 106539 to 107139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,496 DEBUG Processing 30/557 atomic regions from SNP 8729 to 9330 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,561 DEBUG Processing 99/594 atomic regions from SNP 29418 to 30018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,602 DEBUG Processing 561/675 atomic regions from SNP 168159 to 168759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,604 DEBUG Processing 638/704 atomic regions from SNP 191246 to 191846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,700 DEBUG Processing 357/658 atomic regions from SNP 106839 to 107439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:41,707 DEBUG Processing 31/557 atomic regions from SNP 9030 to 9631 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,784 DEBUG Processing 100/594 atomic regions from SNP 29718 to 30318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:41,850 DEBUG Processing 639/704 atomic regions from SNP 191546 to 192146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:41,872 DEBUG Processing 562/675 atomic regions from SNP 168459 to 169059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:41,940 DEBUG Processing 32/557 atomic regions from SNP 9331 to 9932 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:41,960 DEBUG Processing 358/658 atomic regions from SNP 107139 to 107739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,003 DEBUG Processing 101/594 atomic regions from SNP 30018 to 30618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,096 DEBUG Processing 640/704 atomic regions from SNP 191846 to 192446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,121 DEBUG Processing 563/675 atomic regions from SNP 168759 to 169359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,192 DEBUG Processing 33/557 atomic regions from SNP 9632 to 10233 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,215 DEBUG Processing 359/658 atomic regions from SNP 107439 to 108039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,225 DEBUG Processing 102/594 atomic regions from SNP 30318 to 30918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,345 DEBUG Processing 641/704 atomic regions from SNP 192146 to 192746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,360 DEBUG Processing 564/675 atomic regions from SNP 169059 to 169659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,431 DEBUG Processing 34/557 atomic regions from SNP 9933 to 10534 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,452 DEBUG Processing 103/594 atomic regions from SNP 30618 to 31218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,458 DEBUG Processing 360/658 atomic regions from SNP 107739 to 108339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,594 DEBUG Processing 642/704 atomic regions from SNP 192446 to 193046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,612 DEBUG Processing 565/675 atomic regions from SNP 169359 to 169959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,647 DEBUG Processing 35/557 atomic regions from SNP 10234 to 10835 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,666 DEBUG Processing 104/594 atomic regions from SNP 30918 to 31518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,708 DEBUG Processing 361/658 atomic regions from SNP 108039 to 108639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:42,832 DEBUG Processing 643/704 atomic regions from SNP 192746 to 193346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:42,842 DEBUG Processing 566/675 atomic regions from SNP 169659 to 170259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:42,859 DEBUG Processing 36/557 atomic regions from SNP 10535 to 11136 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:42,881 DEBUG Processing 105/594 atomic regions from SNP 31218 to 31818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:42,936 DEBUG Processing 362/658 atomic regions from SNP 108339 to 108939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,076 DEBUG Processing 567/675 atomic regions from SNP 169959 to 170559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,078 DEBUG Processing 644/704 atomic regions from SNP 193046 to 193646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,078 DEBUG Processing 37/557 atomic regions from SNP 10836 to 11437 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,098 DEBUG Processing 106/594 atomic regions from SNP 31518 to 32118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,153 DEBUG Processing 363/658 atomic regions from SNP 108639 to 109239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,300 DEBUG Processing 38/557 atomic regions from SNP 11137 to 11738 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,320 DEBUG Processing 107/594 atomic regions from SNP 31818 to 32418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,323 DEBUG Processing 645/704 atomic regions from SNP 193346 to 193946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,326 DEBUG Processing 568/675 atomic regions from SNP 170259 to 170859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,381 DEBUG Processing 364/658 atomic regions from SNP 108939 to 109539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,524 DEBUG Processing 39/557 atomic regions from SNP 11438 to 12039 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,548 DEBUG Processing 108/594 atomic regions from SNP 32118 to 32718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,571 DEBUG Processing 569/675 atomic regions from SNP 170559 to 171159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,573 DEBUG Processing 646/704 atomic regions from SNP 193646 to 194246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,607 DEBUG Processing 365/658 atomic regions from SNP 109239 to 109839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,736 DEBUG Processing 40/557 atomic regions from SNP 11739 to 12340 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,767 DEBUG Processing 109/594 atomic regions from SNP 32418 to 33018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:43,807 DEBUG Processing 570/675 atomic regions from SNP 170859 to 171459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:43,814 DEBUG Processing 647/704 atomic regions from SNP 193946 to 194546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:43,828 DEBUG Processing 366/658 atomic regions from SNP 109539 to 110139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:43,940 DEBUG Processing 41/557 atomic regions from SNP 12040 to 12641 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:43,979 DEBUG Processing 110/594 atomic regions from SNP 32718 to 33318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,034 DEBUG Processing 571/675 atomic regions from SNP 171159 to 171759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,051 DEBUG Processing 367/658 atomic regions from SNP 109839 to 110439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,054 DEBUG Processing 648/704 atomic regions from SNP 194246 to 194846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,146 DEBUG Processing 42/557 atomic regions from SNP 12341 to 12942 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,186 DEBUG Processing 111/594 atomic regions from SNP 33018 to 33618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,258 DEBUG Processing 572/675 atomic regions from SNP 171459 to 172059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,301 DEBUG Processing 368/658 atomic regions from SNP 110139 to 110739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,304 DEBUG Processing 649/704 atomic regions from SNP 194546 to 195146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,375 DEBUG Processing 43/557 atomic regions from SNP 12642 to 13243 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,418 DEBUG Processing 112/594 atomic regions from SNP 33318 to 33918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,494 DEBUG Processing 573/675 atomic regions from SNP 171759 to 172359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,537 DEBUG Processing 650/704 atomic regions from SNP 194846 to 195446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,554 DEBUG Processing 369/658 atomic regions from SNP 110439 to 111039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,616 DEBUG Processing 44/557 atomic regions from SNP 12943 to 13544 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,631 DEBUG Processing 113/594 atomic regions from SNP 33618 to 34218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,726 DEBUG Processing 574/675 atomic regions from SNP 172059 to 172659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,758 DEBUG Processing 651/704 atomic regions from SNP 195146 to 195746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:44,769 DEBUG Processing 370/658 atomic regions from SNP 110739 to 111339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,841 DEBUG Processing 114/594 atomic regions from SNP 33918 to 34518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:44,847 DEBUG Processing 45/557 atomic regions from SNP 13244 to 13845 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:44,942 DEBUG Processing 575/675 atomic regions from SNP 172359 to 172959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:44,988 DEBUG Processing 371/658 atomic regions from SNP 111039 to 111639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:44,997 DEBUG Processing 652/704 atomic regions from SNP 195446 to 196046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,053 DEBUG Processing 115/594 atomic regions from SNP 34218 to 34818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,080 DEBUG Processing 46/557 atomic regions from SNP 13545 to 14146 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,160 DEBUG Processing 576/675 atomic regions from SNP 172659 to 173259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,202 DEBUG Processing 372/658 atomic regions from SNP 111339 to 111939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,222 DEBUG Processing 653/704 atomic regions from SNP 195746 to 196346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,269 DEBUG Processing 116/594 atomic regions from SNP 34518 to 35118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,309 DEBUG Processing 47/557 atomic regions from SNP 13846 to 14447 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,388 DEBUG Processing 577/675 atomic regions from SNP 172959 to 173559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,427 DEBUG Processing 373/658 atomic regions from SNP 111639 to 112239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,458 DEBUG Processing 654/704 atomic regions from SNP 196046 to 196646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,485 DEBUG Processing 117/594 atomic regions from SNP 34818 to 35418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,547 DEBUG Processing 48/557 atomic regions from SNP 14147 to 14748 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,610 DEBUG Processing 578/675 atomic regions from SNP 173259 to 173859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,667 DEBUG Processing 374/658 atomic regions from SNP 111939 to 112539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,690 DEBUG Processing 655/704 atomic regions from SNP 196346 to 196946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:45,697 DEBUG Processing 118/594 atomic regions from SNP 35118 to 35718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,780 DEBUG Processing 49/557 atomic regions from SNP 14448 to 15049 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:45,834 DEBUG Processing 579/675 atomic regions from SNP 173559 to 174159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:45,906 DEBUG Processing 375/658 atomic regions from SNP 112239 to 112839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:45,912 DEBUG Processing 119/594 atomic regions from SNP 35418 to 36018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:45,926 DEBUG Processing 656/704 atomic regions from SNP 196646 to 197246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,000 DEBUG Processing 50/557 atomic regions from SNP 14749 to 15350 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,056 DEBUG Processing 580/675 atomic regions from SNP 173859 to 174459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,127 DEBUG Processing 120/594 atomic regions from SNP 35718 to 36318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,155 DEBUG Processing 376/658 atomic regions from SNP 112539 to 113139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,166 DEBUG Processing 657/704 atomic regions from SNP 196946 to 197546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,214 DEBUG Processing 51/557 atomic regions from SNP 15050 to 15651 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,307 DEBUG Processing 581/675 atomic regions from SNP 174159 to 174759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,345 DEBUG Processing 121/594 atomic regions from SNP 36018 to 36618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,385 DEBUG Processing 377/658 atomic regions from SNP 112839 to 113439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,414 DEBUG Processing 658/704 atomic regions from SNP 197246 to 197846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,444 DEBUG Processing 52/557 atomic regions from SNP 15351 to 15952 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,553 DEBUG Processing 582/675 atomic regions from SNP 174459 to 175059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,555 DEBUG Processing 122/594 atomic regions from SNP 36318 to 36918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,609 DEBUG Processing 378/658 atomic regions from SNP 113139 to 113739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,655 DEBUG Processing 659/704 atomic regions from SNP 197546 to 198146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,660 DEBUG Processing 53/557 atomic regions from SNP 15652 to 16253 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,775 DEBUG Processing 123/594 atomic regions from SNP 36618 to 37218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:46,790 DEBUG Processing 583/675 atomic regions from SNP 174759 to 175359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:46,858 DEBUG Processing 379/658 atomic regions from SNP 113439 to 114039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:46,895 DEBUG Processing 54/557 atomic regions from SNP 15953 to 16554 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:46,913 DEBUG Processing 660/704 atomic regions from SNP 197846 to 198446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:46,997 DEBUG Processing 124/594 atomic regions from SNP 36918 to 37518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,027 DEBUG Processing 584/675 atomic regions from SNP 175059 to 175659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,085 DEBUG Processing 380/658 atomic regions from SNP 113739 to 114339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,113 DEBUG Processing 55/557 atomic regions from SNP 16254 to 16855 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,154 DEBUG Processing 661/704 atomic regions from SNP 198146 to 198746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,221 DEBUG Processing 125/594 atomic regions from SNP 37218 to 37818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,261 DEBUG Processing 585/675 atomic regions from SNP 175359 to 175959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,310 DEBUG Processing 381/658 atomic regions from SNP 114039 to 114639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,328 DEBUG Processing 56/557 atomic regions from SNP 16555 to 17156 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,391 DEBUG Processing 662/704 atomic regions from SNP 198446 to 199046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,449 DEBUG Processing 126/594 atomic regions from SNP 37518 to 38118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,504 DEBUG Processing 586/675 atomic regions from SNP 175659 to 176259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,548 DEBUG Processing 382/658 atomic regions from SNP 114339 to 114939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,554 DEBUG Processing 57/557 atomic regions from SNP 16856 to 17457 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,640 DEBUG Processing 663/704 atomic regions from SNP 198746 to 199346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,681 DEBUG Processing 127/594 atomic regions from SNP 37818 to 38418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,746 DEBUG Processing 587/675 atomic regions from SNP 175959 to 176559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:47,782 DEBUG Processing 58/557 atomic regions from SNP 17157 to 17758 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:47,787 DEBUG Processing 383/658 atomic regions from SNP 114639 to 115239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:47,899 DEBUG Processing 128/594 atomic regions from SNP 38118 to 38718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:47,906 DEBUG Processing 664/704 atomic regions from SNP 199046 to 199646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:47,979 DEBUG Processing 588/675 atomic regions from SNP 176259 to 176859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,001 DEBUG Processing 59/557 atomic regions from SNP 17458 to 18059 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,024 DEBUG Processing 384/658 atomic regions from SNP 114939 to 115539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,125 DEBUG Processing 129/594 atomic regions from SNP 38418 to 39018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,196 DEBUG Processing 665/704 atomic regions from SNP 199346 to 199946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,222 DEBUG Processing 589/675 atomic regions from SNP 176559 to 177159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,234 DEBUG Processing 60/557 atomic regions from SNP 17759 to 18360 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,258 DEBUG Processing 385/658 atomic regions from SNP 115239 to 115839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,343 DEBUG Processing 130/594 atomic regions from SNP 38718 to 39318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,459 DEBUG Processing 590/675 atomic regions from SNP 176859 to 177459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,463 DEBUG Processing 61/557 atomic regions from SNP 18060 to 18661 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,475 DEBUG Processing 666/704 atomic regions from SNP 199646 to 200246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,488 DEBUG Processing 386/658 atomic regions from SNP 115539 to 116139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,565 DEBUG Processing 131/594 atomic regions from SNP 39018 to 39618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,696 DEBUG Processing 591/675 atomic regions from SNP 177159 to 177759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,720 DEBUG Processing 62/557 atomic regions from SNP 18361 to 18962 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,745 DEBUG Processing 387/658 atomic regions from SNP 115839 to 116439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:48,762 DEBUG Processing 667/704 atomic regions from SNP 199946 to 200546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:48,797 DEBUG Processing 132/594 atomic regions from SNP 39318 to 39918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:48,925 DEBUG Processing 592/675 atomic regions from SNP 177459 to 178059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:48,957 DEBUG Processing 63/557 atomic regions from SNP 18662 to 19263 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:48,981 DEBUG Processing 388/658 atomic regions from SNP 116139 to 116739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,012 DEBUG Processing 133/594 atomic regions from SNP 39618 to 40218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,036 DEBUG Processing 668/704 atomic regions from SNP 200246 to 200846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,154 DEBUG Processing 593/675 atomic regions from SNP 177759 to 178359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,192 DEBUG Processing 64/557 atomic regions from SNP 18963 to 19564 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,205 DEBUG Processing 389/658 atomic regions from SNP 116439 to 117039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,241 DEBUG Processing 134/594 atomic regions from SNP 39918 to 40518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,308 DEBUG Processing 669/704 atomic regions from SNP 200546 to 201146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,384 DEBUG Processing 594/675 atomic regions from SNP 178059 to 178659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,426 DEBUG Processing 65/557 atomic regions from SNP 19264 to 19865 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,432 DEBUG Processing 390/658 atomic regions from SNP 116739 to 117339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,462 DEBUG Processing 135/594 atomic regions from SNP 40218 to 40818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,575 DEBUG Processing 670/704 atomic regions from SNP 200846 to 201446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,614 DEBUG Processing 595/675 atomic regions from SNP 178359 to 178959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,656 DEBUG Processing 66/557 atomic regions from SNP 19565 to 20166 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,659 DEBUG Processing 391/658 atomic regions from SNP 117039 to 117639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,685 DEBUG Processing 136/594 atomic regions from SNP 40518 to 41118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:49,834 DEBUG Processing 671/704 atomic regions from SNP 201146 to 201746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:49,844 DEBUG Processing 596/675 atomic regions from SNP 178659 to 179259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:49,889 DEBUG Processing 392/658 atomic regions from SNP 117339 to 117939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:49,896 DEBUG Processing 67/557 atomic regions from SNP 19866 to 20467 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:49,909 DEBUG Processing 137/594 atomic regions from SNP 40818 to 41418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,088 DEBUG Processing 597/675 atomic regions from SNP 178959 to 179559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,116 DEBUG Processing 672/704 atomic regions from SNP 201446 to 202046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,132 DEBUG Processing 393/658 atomic regions from SNP 117639 to 118239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,138 DEBUG Processing 68/557 atomic regions from SNP 20167 to 20768 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,143 DEBUG Processing 138/594 atomic regions from SNP 41118 to 41718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,328 DEBUG Processing 598/675 atomic regions from SNP 179259 to 179859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,366 DEBUG Processing 69/557 atomic regions from SNP 20468 to 21069 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,369 DEBUG Processing 394/658 atomic regions from SNP 117939 to 118539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,372 DEBUG Processing 139/594 atomic regions from SNP 41418 to 42018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,399 DEBUG Processing 673/704 atomic regions from SNP 201746 to 202346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,587 DEBUG Processing 599/675 atomic regions from SNP 179559 to 180159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,593 DEBUG Processing 70/557 atomic regions from SNP 20769 to 21370 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,597 DEBUG Processing 395/658 atomic regions from SNP 118239 to 118839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,600 DEBUG Processing 140/594 atomic regions from SNP 41718 to 42318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,684 DEBUG Processing 674/704 atomic regions from SNP 202046 to 202646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:50,809 DEBUG Processing 71/557 atomic regions from SNP 21070 to 21671 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:50,819 DEBUG Processing 141/594 atomic regions from SNP 42018 to 42618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:50,824 DEBUG Processing 396/658 atomic regions from SNP 118539 to 119139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:50,834 DEBUG Processing 600/675 atomic regions from SNP 179859 to 180459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:50,948 DEBUG Processing 675/704 atomic regions from SNP 202346 to 202946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,028 DEBUG Processing 72/557 atomic regions from SNP 21371 to 21972 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,040 DEBUG Processing 142/594 atomic regions from SNP 42318 to 42918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,066 DEBUG Processing 397/658 atomic regions from SNP 118839 to 119439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,069 DEBUG Processing 601/675 atomic regions from SNP 180159 to 180759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,226 DEBUG Processing 676/704 atomic regions from SNP 202646 to 203246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,250 DEBUG Processing 73/557 atomic regions from SNP 21672 to 22273 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,290 DEBUG Processing 143/594 atomic regions from SNP 42618 to 43218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,297 DEBUG Processing 398/658 atomic regions from SNP 119139 to 119739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,314 DEBUG Processing 602/675 atomic regions from SNP 180459 to 181059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,481 DEBUG Processing 74/557 atomic regions from SNP 21973 to 22574 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,498 DEBUG Processing 677/704 atomic regions from SNP 202946 to 203546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,528 DEBUG Processing 144/594 atomic regions from SNP 42918 to 43518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,537 DEBUG Processing 399/658 atomic regions from SNP 119439 to 120039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,555 DEBUG Processing 603/675 atomic regions from SNP 180759 to 181359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,689 DEBUG Processing 75/557 atomic regions from SNP 22274 to 22875 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,753 DEBUG Processing 145/594 atomic regions from SNP 43218 to 43818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,761 DEBUG Processing 678/704 atomic regions from SNP 203246 to 203846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:51,766 DEBUG Processing 400/658 atomic regions from SNP 119739 to 120339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:51,785 DEBUG Processing 604/675 atomic regions from SNP 181059 to 181659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:51,889 DEBUG Processing 76/557 atomic regions from SNP 22575 to 23176 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:51,969 DEBUG Processing 146/594 atomic regions from SNP 43518 to 44118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:51,995 DEBUG Processing 679/704 atomic regions from SNP 203546 to 204146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,007 DEBUG Processing 401/658 atomic regions from SNP 120039 to 120639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,010 DEBUG Processing 605/675 atomic regions from SNP 181359 to 181959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,090 DEBUG Processing 77/557 atomic regions from SNP 22876 to 23477 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,193 DEBUG Processing 147/594 atomic regions from SNP 43818 to 44418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,260 DEBUG Processing 606/675 atomic regions from SNP 181659 to 182259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,276 DEBUG Processing 680/704 atomic regions from SNP 203846 to 204446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,281 DEBUG Processing 402/658 atomic regions from SNP 120339 to 120939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,311 DEBUG Processing 78/557 atomic regions from SNP 23177 to 23778 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,411 DEBUG Processing 148/594 atomic regions from SNP 44118 to 44718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,510 DEBUG Processing 607/675 atomic regions from SNP 181959 to 182559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,523 DEBUG Processing 79/557 atomic regions from SNP 23478 to 24079 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,534 DEBUG Processing 403/658 atomic regions from SNP 120639 to 121239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,538 DEBUG Processing 681/704 atomic regions from SNP 204146 to 204746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,620 DEBUG Processing 149/594 atomic regions from SNP 44418 to 45018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,731 DEBUG Processing 80/557 atomic regions from SNP 23779 to 24380 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,739 DEBUG Processing 608/675 atomic regions from SNP 182259 to 182859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:52,786 DEBUG Processing 682/704 atomic regions from SNP 204446 to 205046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:52,794 DEBUG Processing 404/658 atomic regions from SNP 120939 to 121539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:52,835 DEBUG Processing 150/594 atomic regions from SNP 44718 to 45318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:52,931 DEBUG Processing 81/557 atomic regions from SNP 24080 to 24681 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:52,958 DEBUG Processing 609/675 atomic regions from SNP 182559 to 183159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,037 DEBUG Processing 683/704 atomic regions from SNP 204746 to 205346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,046 DEBUG Processing 151/594 atomic regions from SNP 45018 to 45618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,047 DEBUG Processing 405/658 atomic regions from SNP 121239 to 121839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,148 DEBUG Processing 82/557 atomic regions from SNP 24381 to 24982 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,176 DEBUG Processing 610/675 atomic regions from SNP 182859 to 183459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,256 DEBUG Processing 152/594 atomic regions from SNP 45318 to 45918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,281 DEBUG Processing 406/658 atomic regions from SNP 121539 to 122139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,295 DEBUG Processing 684/704 atomic regions from SNP 205046 to 205646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,376 DEBUG Processing 83/557 atomic regions from SNP 24682 to 25283 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,391 DEBUG Processing 611/675 atomic regions from SNP 183159 to 183759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,460 DEBUG Processing 153/594 atomic regions from SNP 45618 to 46218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,494 DEBUG Processing 407/658 atomic regions from SNP 121839 to 122439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,529 DEBUG Processing 685/704 atomic regions from SNP 205346 to 205946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,606 DEBUG Processing 612/675 atomic regions from SNP 183459 to 184059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,611 DEBUG Processing 84/557 atomic regions from SNP 24983 to 25584 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,665 DEBUG Processing 154/594 atomic regions from SNP 45918 to 46518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,712 DEBUG Processing 408/658 atomic regions from SNP 122139 to 122739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,760 DEBUG Processing 686/704 atomic regions from SNP 205646 to 206246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:53,831 DEBUG Processing 613/675 atomic regions from SNP 183759 to 184359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:53,839 DEBUG Processing 85/557 atomic regions from SNP 25284 to 25885 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:53,878 DEBUG Processing 155/594 atomic regions from SNP 46218 to 46818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:53,930 DEBUG Processing 409/658 atomic regions from SNP 122439 to 123039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:53,984 DEBUG Processing 687/704 atomic regions from SNP 205946 to 206546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,044 DEBUG Processing 614/675 atomic regions from SNP 184059 to 184659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,067 DEBUG Processing 86/557 atomic regions from SNP 25585 to 26186 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,079 DEBUG Processing 156/594 atomic regions from SNP 46518 to 47118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,144 DEBUG Processing 410/658 atomic regions from SNP 122739 to 123339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,212 DEBUG Processing 688/704 atomic regions from SNP 206246 to 206846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,264 DEBUG Processing 615/675 atomic regions from SNP 184359 to 184959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,286 DEBUG Processing 87/557 atomic regions from SNP 25886 to 26487 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,289 DEBUG Processing 157/594 atomic regions from SNP 46818 to 47418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,362 DEBUG Processing 411/658 atomic regions from SNP 123039 to 123639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,454 DEBUG Processing 689/704 atomic regions from SNP 206546 to 207146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,493 DEBUG Processing 158/594 atomic regions from SNP 47118 to 47718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,497 DEBUG Processing 616/675 atomic regions from SNP 184659 to 185259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,516 DEBUG Processing 88/557 atomic regions from SNP 26187 to 26788 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,576 DEBUG Processing 412/658 atomic regions from SNP 123339 to 123939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,698 DEBUG Processing 159/594 atomic regions from SNP 47418 to 48018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,700 DEBUG Processing 690/704 atomic regions from SNP 206846 to 207446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,750 DEBUG Processing 617/675 atomic regions from SNP 184959 to 185559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:54,802 DEBUG Processing 413/658 atomic regions from SNP 123639 to 124239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:54,823 DEBUG Processing 89/557 atomic regions from SNP 26488 to 27089 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:54,928 DEBUG Processing 160/594 atomic regions from SNP 47718 to 48318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:54,958 DEBUG Processing 691/704 atomic regions from SNP 207146 to 207746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:54,982 DEBUG Processing 618/675 atomic regions from SNP 185259 to 185859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,028 DEBUG Processing 414/658 atomic regions from SNP 123939 to 124539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,073 DEBUG Processing 90/557 atomic regions from SNP 26789 to 27390 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,140 DEBUG Processing 161/594 atomic regions from SNP 48018 to 48618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,192 DEBUG Processing 692/704 atomic regions from SNP 207446 to 208046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,210 DEBUG Processing 619/675 atomic regions from SNP 185559 to 186159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,251 DEBUG Processing 415/658 atomic regions from SNP 124239 to 124839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,314 DEBUG Processing 91/557 atomic regions from SNP 27090 to 27691 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,341 DEBUG Processing 162/594 atomic regions from SNP 48318 to 48918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,429 DEBUG Processing 693/704 atomic regions from SNP 207746 to 208346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,430 DEBUG Processing 620/675 atomic regions from SNP 185859 to 186459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,474 DEBUG Processing 416/658 atomic regions from SNP 124539 to 125139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,541 DEBUG Processing 92/557 atomic regions from SNP 27391 to 27992 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,543 DEBUG Processing 163/594 atomic regions from SNP 48618 to 49218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,650 DEBUG Processing 621/675 atomic regions from SNP 186159 to 186759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,680 DEBUG Processing 694/704 atomic regions from SNP 208046 to 208646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,714 DEBUG Processing 417/658 atomic regions from SNP 124839 to 125439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,744 DEBUG Processing 164/594 atomic regions from SNP 48918 to 49518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,752 DEBUG Processing 93/557 atomic regions from SNP 27692 to 28293 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:55,873 DEBUG Processing 622/675 atomic regions from SNP 186459 to 187059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:55,935 DEBUG Processing 695/704 atomic regions from SNP 208346 to 208946 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:55,937 DEBUG Processing 418/658 atomic regions from SNP 125139 to 125739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:55,955 DEBUG Processing 165/594 atomic regions from SNP 49218 to 49818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:55,976 DEBUG Processing 94/557 atomic regions from SNP 27993 to 28594 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,096 DEBUG Processing 623/675 atomic regions from SNP 186759 to 187359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,175 DEBUG Processing 166/594 atomic regions from SNP 49518 to 50118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,181 DEBUG Processing 419/658 atomic regions from SNP 125439 to 126039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,185 DEBUG Processing 95/557 atomic regions from SNP 28294 to 28895 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,204 DEBUG Processing 696/704 atomic regions from SNP 208646 to 209246 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,313 DEBUG Processing 624/675 atomic regions from SNP 187059 to 187659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,390 DEBUG Processing 96/557 atomic regions from SNP 28595 to 29196 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,401 DEBUG Processing 420/658 atomic regions from SNP 125739 to 126339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,404 DEBUG Processing 167/594 atomic regions from SNP 49818 to 50418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,475 DEBUG Processing 697/704 atomic regions from SNP 208946 to 209546 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,532 DEBUG Processing 625/675 atomic regions from SNP 187359 to 187959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,589 DEBUG Processing 97/557 atomic regions from SNP 28896 to 29497 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,610 DEBUG Processing 168/594 atomic regions from SNP 50118 to 50718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,616 DEBUG Processing 421/658 atomic regions from SNP 126039 to 126639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,735 DEBUG Processing 698/704 atomic regions from SNP 209246 to 209846 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:56,747 DEBUG Processing 626/675 atomic regions from SNP 187659 to 188259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,788 DEBUG Processing 98/557 atomic regions from SNP 29197 to 29798 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,828 DEBUG Processing 169/594 atomic regions from SNP 50418 to 51018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:56,834 DEBUG Processing 422/658 atomic regions from SNP 126339 to 126939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:56,970 DEBUG Processing 627/675 atomic regions from SNP 187959 to 188559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:56,990 DEBUG Processing 99/557 atomic regions from SNP 29498 to 30099 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:56,991 DEBUG Processing 699/704 atomic regions from SNP 209546 to 210146 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,043 DEBUG Processing 170/594 atomic regions from SNP 50718 to 51318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,056 DEBUG Processing 423/658 atomic regions from SNP 126639 to 127239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,199 DEBUG Processing 100/557 atomic regions from SNP 29799 to 30400 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,228 DEBUG Processing 628/675 atomic regions from SNP 188259 to 188859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,258 DEBUG Processing 171/594 atomic regions from SNP 51018 to 51618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,260 DEBUG Processing 700/704 atomic regions from SNP 209846 to 210446 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,292 DEBUG Processing 424/658 atomic regions from SNP 126939 to 127539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,403 DEBUG Processing 101/557 atomic regions from SNP 30100 to 30701 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,482 DEBUG Processing 172/594 atomic regions from SNP 51318 to 51918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,492 DEBUG Processing 629/675 atomic regions from SNP 188559 to 189159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,518 DEBUG Processing 701/704 atomic regions from SNP 210146 to 210746 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,554 DEBUG Processing 425/658 atomic regions from SNP 127239 to 127839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,601 DEBUG Processing 102/557 atomic regions from SNP 30401 to 31002 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,705 DEBUG Processing 173/594 atomic regions from SNP 51618 to 52218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,741 DEBUG Processing 630/675 atomic regions from SNP 188859 to 189459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:57,789 DEBUG Processing 702/704 atomic regions from SNP 210446 to 211046 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:57,795 DEBUG Processing 426/658 atomic regions from SNP 127539 to 128139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:57,835 DEBUG Processing 103/557 atomic regions from SNP 30702 to 31303 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:57,922 DEBUG Processing 174/594 atomic regions from SNP 51918 to 52518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:57,978 DEBUG Processing 631/675 atomic regions from SNP 189159 to 189759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,039 DEBUG Processing 703/704 atomic regions from SNP 210746 to 211346 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,045 DEBUG Processing 427/658 atomic regions from SNP 127839 to 128439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,080 DEBUG Processing 104/557 atomic regions from SNP 31003 to 31604 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,131 DEBUG Processing 175/594 atomic regions from SNP 52218 to 52818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,198 DEBUG Processing 632/675 atomic regions from SNP 189459 to 190059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,264 DEBUG Processing 704/704 atomic regions from SNP 211046 to 211646 for chr11 (subchromosome 1 of 1). 2025-01-31 09:56:58,289 DEBUG Processing 428/658 atomic regions from SNP 128139 to 128739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,299 DEBUG Processing 105/557 atomic regions from SNP 31304 to 31905 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,338 DEBUG Processing 176/594 atomic regions from SNP 52518 to 53118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,396 DEBUG Unique SNPs positions in subchromosome 1: 211647 2025-01-31 09:56:58,426 DEBUG Processing 633/675 atomic regions from SNP 189759 to 190359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,507 DEBUG Processing 106/557 atomic regions from SNP 31605 to 32206 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,534 DEBUG Processing 429/658 atomic regions from SNP 128439 to 129039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,550 DEBUG Processing 177/594 atomic regions from SNP 52818 to 53418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,676 DEBUG Processing 634/675 atomic regions from SNP 190059 to 190659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,708 DEBUG Processing 107/557 atomic regions from SNP 31906 to 32507 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,758 DEBUG Processing 430/658 atomic regions from SNP 128739 to 129339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:58,760 DEBUG Processing 178/594 atomic regions from SNP 53118 to 53718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,922 DEBUG Processing 635/675 atomic regions from SNP 190359 to 190959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:58,936 DEBUG Processing 108/557 atomic regions from SNP 32207 to 32808 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:58,963 DEBUG Processing 179/594 atomic regions from SNP 53418 to 54018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:58,972 DEBUG Processing 431/658 atomic regions from SNP 129039 to 129639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,156 DEBUG Processing 109/557 atomic regions from SNP 32508 to 33109 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,158 DEBUG Processing 636/675 atomic regions from SNP 190659 to 191259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,174 DEBUG Processing 180/594 atomic regions from SNP 53718 to 54318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,190 DEBUG Processing 432/658 atomic regions from SNP 129339 to 129939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,370 DEBUG Processing 110/557 atomic regions from SNP 32809 to 33410 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,393 DEBUG Processing 181/594 atomic regions from SNP 54018 to 54618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,394 DEBUG Processing 637/675 atomic regions from SNP 190959 to 191559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,422 DEBUG Processing 433/658 atomic regions from SNP 129639 to 130239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,577 DEBUG Processing 111/557 atomic regions from SNP 33110 to 33711 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,607 DEBUG Processing 182/594 atomic regions from SNP 54318 to 54918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,620 DEBUG Processing 638/675 atomic regions from SNP 191259 to 191859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,649 DEBUG Processing 434/658 atomic regions from SNP 129939 to 130539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:56:59,796 DEBUG Processing 112/557 atomic regions from SNP 33411 to 34012 for chr16 (subchromosome 1 of 1). 2025-01-31 09:56:59,828 DEBUG Processing 183/594 atomic regions from SNP 54618 to 55218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:56:59,860 DEBUG Processing 639/675 atomic regions from SNP 191559 to 192159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:56:59,883 DEBUG Processing 435/658 atomic regions from SNP 130239 to 130839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,006 DEBUG Processing 113/557 atomic regions from SNP 33712 to 34313 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,041 DEBUG Processing 184/594 atomic regions from SNP 54918 to 55518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,089 DEBUG Processing 640/675 atomic regions from SNP 191859 to 192459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,109 DEBUG Processing 436/658 atomic regions from SNP 130539 to 131139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,205 DEBUG Processing 114/557 atomic regions from SNP 34013 to 34614 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,244 DEBUG Processing 185/594 atomic regions from SNP 55218 to 55818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,326 DEBUG Processing 641/675 atomic regions from SNP 192159 to 192759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,334 DEBUG Processing 437/658 atomic regions from SNP 130839 to 131439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,419 DEBUG Processing 115/557 atomic regions from SNP 34314 to 34915 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,452 DEBUG Processing 186/594 atomic regions from SNP 55518 to 56118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,548 DEBUG Processing 642/675 atomic regions from SNP 192459 to 193059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,552 DEBUG Processing 438/658 atomic regions from SNP 131139 to 131739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,620 DEBUG Processing 116/557 atomic regions from SNP 34615 to 35216 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,654 DEBUG Processing 187/594 atomic regions from SNP 55818 to 56418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,763 DEBUG Processing 643/675 atomic regions from SNP 192759 to 193359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:00,764 DEBUG Processing 439/658 atomic regions from SNP 131439 to 132039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,817 DEBUG Processing 117/557 atomic regions from SNP 34916 to 35517 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:00,858 DEBUG Processing 188/594 atomic regions from SNP 56118 to 56718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:00,978 DEBUG Processing 440/658 atomic regions from SNP 131739 to 132339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:00,982 DEBUG Processing 644/675 atomic regions from SNP 193059 to 193659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,020 DEBUG Processing 118/557 atomic regions from SNP 35217 to 35818 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,063 DEBUG Processing 189/594 atomic regions from SNP 56418 to 57018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,199 DEBUG Processing 441/658 atomic regions from SNP 132039 to 132639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,206 DEBUG Processing 645/675 atomic regions from SNP 193359 to 193959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,245 DEBUG Processing 119/557 atomic regions from SNP 35518 to 36119 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,264 DEBUG Processing 190/594 atomic regions from SNP 56718 to 57318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,412 DEBUG Processing 442/658 atomic regions from SNP 132339 to 132939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,425 DEBUG Processing 646/675 atomic regions from SNP 193659 to 194259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,450 DEBUG Processing 120/557 atomic regions from SNP 35819 to 36420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,467 DEBUG Processing 191/594 atomic regions from SNP 57018 to 57618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,653 DEBUG Processing 647/675 atomic regions from SNP 193959 to 194559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,654 DEBUG Processing 443/658 atomic regions from SNP 132639 to 133239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,662 DEBUG Processing 121/557 atomic regions from SNP 36120 to 36721 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,684 DEBUG Processing 192/594 atomic regions from SNP 57318 to 57918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:01,872 DEBUG Processing 122/557 atomic regions from SNP 36421 to 37022 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:01,883 DEBUG Processing 648/675 atomic regions from SNP 194259 to 194859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:01,890 DEBUG Processing 444/658 atomic regions from SNP 132939 to 133539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:01,911 DEBUG Processing 193/594 atomic regions from SNP 57618 to 58218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,076 DEBUG Processing 123/557 atomic regions from SNP 36722 to 37323 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,106 DEBUG Processing 649/675 atomic regions from SNP 194559 to 195159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,137 DEBUG Processing 194/594 atomic regions from SNP 57918 to 58518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,142 DEBUG Processing 445/658 atomic regions from SNP 133239 to 133839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,278 DEBUG Processing 124/557 atomic regions from SNP 37023 to 37624 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,330 DEBUG Processing 650/675 atomic regions from SNP 194859 to 195459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,378 DEBUG Processing 195/594 atomic regions from SNP 58218 to 58818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,395 DEBUG Processing 446/658 atomic regions from SNP 133539 to 134139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,472 DEBUG Processing 125/557 atomic regions from SNP 37324 to 37925 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,548 DEBUG Processing 651/675 atomic regions from SNP 195159 to 195759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,616 DEBUG Processing 196/594 atomic regions from SNP 58518 to 59118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,622 DEBUG Processing 447/658 atomic regions from SNP 133839 to 134439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,668 DEBUG Processing 126/557 atomic regions from SNP 37625 to 38226 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,763 DEBUG Processing 652/675 atomic regions from SNP 195459 to 196059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:02,854 DEBUG Processing 197/594 atomic regions from SNP 58818 to 59418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:02,861 DEBUG Processing 448/658 atomic regions from SNP 134139 to 134739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:02,871 DEBUG Processing 127/557 atomic regions from SNP 37926 to 38527 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:02,985 DEBUG Processing 653/675 atomic regions from SNP 195759 to 196359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,065 DEBUG Processing 198/594 atomic regions from SNP 59118 to 59718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,073 DEBUG Processing 128/557 atomic regions from SNP 38227 to 38828 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,103 DEBUG Processing 449/658 atomic regions from SNP 134439 to 135039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,197 DEBUG Processing 654/675 atomic regions from SNP 196059 to 196659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,272 DEBUG Processing 199/594 atomic regions from SNP 59418 to 60018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,274 DEBUG Processing 129/557 atomic regions from SNP 38528 to 39129 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,356 DEBUG Processing 450/658 atomic regions from SNP 134739 to 135339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,412 DEBUG Processing 655/675 atomic regions from SNP 196359 to 196959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,475 DEBUG Processing 130/557 atomic regions from SNP 38829 to 39430 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,478 DEBUG Processing 200/594 atomic regions from SNP 59718 to 60318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,608 DEBUG Processing 451/658 atomic regions from SNP 135039 to 135639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,628 DEBUG Processing 656/675 atomic regions from SNP 196659 to 197259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,675 DEBUG Processing 131/557 atomic regions from SNP 39130 to 39731 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,683 DEBUG Processing 201/594 atomic regions from SNP 60018 to 60618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:03,840 DEBUG Processing 452/658 atomic regions from SNP 135339 to 135939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:03,843 DEBUG Processing 657/675 atomic regions from SNP 196959 to 197559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:03,876 DEBUG Processing 132/557 atomic regions from SNP 39431 to 40032 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:03,888 DEBUG Processing 202/594 atomic regions from SNP 60318 to 60918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,073 DEBUG Processing 453/658 atomic regions from SNP 135639 to 136239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,077 DEBUG Processing 658/675 atomic regions from SNP 197259 to 197859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,080 DEBUG Processing 133/557 atomic regions from SNP 39732 to 40333 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,107 DEBUG Processing 203/594 atomic regions from SNP 60618 to 61218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,282 DEBUG Processing 134/557 atomic regions from SNP 40033 to 40634 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,298 DEBUG Processing 659/675 atomic regions from SNP 197559 to 198159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,315 DEBUG Processing 454/658 atomic regions from SNP 135939 to 136539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,317 DEBUG Processing 204/594 atomic regions from SNP 60918 to 61518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,485 DEBUG Processing 135/557 atomic regions from SNP 40334 to 40935 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,526 DEBUG Processing 660/675 atomic regions from SNP 197859 to 198459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,533 DEBUG Processing 205/594 atomic regions from SNP 61218 to 61818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,552 DEBUG Processing 455/658 atomic regions from SNP 136239 to 136839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,687 DEBUG Processing 136/557 atomic regions from SNP 40635 to 41236 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,749 DEBUG Processing 661/675 atomic regions from SNP 198159 to 198759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,766 DEBUG Processing 206/594 atomic regions from SNP 61518 to 62118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:04,797 DEBUG Processing 456/658 atomic regions from SNP 136539 to 137139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:04,877 DEBUG Processing 137/557 atomic regions from SNP 40936 to 41537 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:04,968 DEBUG Processing 662/675 atomic regions from SNP 198459 to 199059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:04,997 DEBUG Processing 207/594 atomic regions from SNP 61818 to 62418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,035 DEBUG Processing 457/658 atomic regions from SNP 136839 to 137439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,070 DEBUG Processing 138/557 atomic regions from SNP 41237 to 41838 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,183 DEBUG Processing 663/675 atomic regions from SNP 198759 to 199359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,223 DEBUG Processing 208/594 atomic regions from SNP 62118 to 62718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,260 DEBUG Processing 458/658 atomic regions from SNP 137139 to 137739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,262 DEBUG Processing 139/557 atomic regions from SNP 41538 to 42139 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,391 DEBUG Processing 664/675 atomic regions from SNP 199059 to 199659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,425 DEBUG Processing 209/594 atomic regions from SNP 62418 to 63018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,460 DEBUG Processing 140/557 atomic regions from SNP 41839 to 42440 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,474 DEBUG Processing 459/658 atomic regions from SNP 137439 to 138039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,605 DEBUG Processing 665/675 atomic regions from SNP 199359 to 199959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,628 DEBUG Processing 210/594 atomic regions from SNP 62718 to 63318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,662 DEBUG Processing 141/557 atomic regions from SNP 42140 to 42741 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,694 DEBUG Processing 460/658 atomic regions from SNP 137739 to 138339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:05,828 DEBUG Processing 666/675 atomic regions from SNP 199659 to 200259 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:05,832 DEBUG Processing 211/594 atomic regions from SNP 63018 to 63618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:05,862 DEBUG Processing 142/557 atomic regions from SNP 42441 to 43042 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:05,914 DEBUG Processing 461/658 atomic regions from SNP 138039 to 138639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,040 DEBUG Processing 212/594 atomic regions from SNP 63318 to 63918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,051 DEBUG Processing 667/675 atomic regions from SNP 199959 to 200559 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,066 DEBUG Processing 143/557 atomic regions from SNP 42742 to 43343 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,137 DEBUG Processing 462/658 atomic regions from SNP 138339 to 138939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,244 DEBUG Processing 213/594 atomic regions from SNP 63618 to 64218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,268 DEBUG Processing 144/557 atomic regions from SNP 43043 to 43644 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,269 DEBUG Processing 668/675 atomic regions from SNP 200259 to 200859 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,351 DEBUG Processing 463/658 atomic regions from SNP 138639 to 139239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,450 DEBUG Processing 214/594 atomic regions from SNP 63918 to 64518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,469 DEBUG Processing 145/557 atomic regions from SNP 43344 to 43945 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,490 DEBUG Processing 669/675 atomic regions from SNP 200559 to 201159 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,560 DEBUG Processing 464/658 atomic regions from SNP 138939 to 139539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,649 DEBUG Processing 215/594 atomic regions from SNP 64218 to 64818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,663 DEBUG Processing 146/557 atomic regions from SNP 43645 to 44246 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,705 DEBUG Processing 670/675 atomic regions from SNP 200859 to 201459 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,764 DEBUG Processing 465/658 atomic regions from SNP 139239 to 139839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:06,845 DEBUG Processing 216/594 atomic regions from SNP 64518 to 65118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:06,855 DEBUG Processing 147/557 atomic regions from SNP 43946 to 44547 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:06,921 DEBUG Processing 671/675 atomic regions from SNP 201159 to 201759 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:06,994 DEBUG Processing 466/658 atomic regions from SNP 139539 to 140139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,041 DEBUG Processing 217/594 atomic regions from SNP 64818 to 65418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,044 DEBUG Processing 148/557 atomic regions from SNP 44247 to 44848 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,136 DEBUG Processing 672/675 atomic regions from SNP 201459 to 202059 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,237 DEBUG Processing 149/557 atomic regions from SNP 44548 to 45149 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,238 DEBUG Processing 467/658 atomic regions from SNP 139839 to 140439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,241 DEBUG Processing 218/594 atomic regions from SNP 65118 to 65718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,348 DEBUG Processing 673/675 atomic regions from SNP 201759 to 202359 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,434 DEBUG Processing 150/557 atomic regions from SNP 44849 to 45450 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,445 DEBUG Processing 219/594 atomic regions from SNP 65418 to 66018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,479 DEBUG Processing 468/658 atomic regions from SNP 140139 to 140739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,573 DEBUG Processing 674/675 atomic regions from SNP 202059 to 202659 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,631 DEBUG Processing 151/557 atomic regions from SNP 45150 to 45751 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,650 DEBUG Processing 220/594 atomic regions from SNP 65718 to 66318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,731 DEBUG Processing 469/658 atomic regions from SNP 140439 to 141039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,822 DEBUG Processing 675/675 atomic regions from SNP 202359 to 202959 for chr13 (subchromosome 1 of 1). 2025-01-31 09:57:07,825 DEBUG Processing 152/557 atomic regions from SNP 45451 to 46052 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:07,855 DEBUG Processing 221/594 atomic regions from SNP 66018 to 66618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:07,960 DEBUG Processing 470/658 atomic regions from SNP 140739 to 141339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:07,972 DEBUG Unique SNPs positions in subchromosome 1: 202960 2025-01-31 09:57:08,019 DEBUG Processing 153/557 atomic regions from SNP 45752 to 46353 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,057 DEBUG Processing 222/594 atomic regions from SNP 66318 to 66918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,166 DEBUG Processing 471/658 atomic regions from SNP 141039 to 141639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,203 DEBUG Processing 154/557 atomic regions from SNP 46053 to 46654 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,251 DEBUG Processing 223/594 atomic regions from SNP 66618 to 67218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,372 DEBUG Processing 472/658 atomic regions from SNP 141339 to 141939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,393 DEBUG Processing 155/557 atomic regions from SNP 46354 to 46955 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,448 DEBUG Processing 224/594 atomic regions from SNP 66918 to 67518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,580 DEBUG Processing 473/658 atomic regions from SNP 141639 to 142239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,587 DEBUG Processing 156/557 atomic regions from SNP 46655 to 47256 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,649 DEBUG Processing 225/594 atomic regions from SNP 67218 to 67818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,781 DEBUG Processing 157/557 atomic regions from SNP 46956 to 47557 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,786 DEBUG Processing 474/658 atomic regions from SNP 141939 to 142539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:08,856 DEBUG Processing 226/594 atomic regions from SNP 67518 to 68118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:08,969 DEBUG Processing 158/557 atomic regions from SNP 47257 to 47858 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:08,988 DEBUG Processing 475/658 atomic regions from SNP 142239 to 142839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,054 DEBUG Processing 227/594 atomic regions from SNP 67818 to 68418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,154 DEBUG Processing 159/557 atomic regions from SNP 47558 to 48159 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,190 DEBUG Processing 476/658 atomic regions from SNP 142539 to 143139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,252 DEBUG Processing 228/594 atomic regions from SNP 68118 to 68718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,342 DEBUG Processing 160/557 atomic regions from SNP 47859 to 48460 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,393 DEBUG Processing 477/658 atomic regions from SNP 142839 to 143439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,451 DEBUG Processing 229/594 atomic regions from SNP 68418 to 69018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,534 DEBUG Processing 161/557 atomic regions from SNP 48160 to 48761 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,596 DEBUG Processing 478/658 atomic regions from SNP 143139 to 143739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,646 DEBUG Processing 230/594 atomic regions from SNP 68718 to 69318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,726 DEBUG Processing 162/557 atomic regions from SNP 48461 to 49062 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:09,801 DEBUG Processing 479/658 atomic regions from SNP 143439 to 144039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:09,842 DEBUG Processing 231/594 atomic regions from SNP 69018 to 69618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:09,923 DEBUG Processing 163/557 atomic regions from SNP 48762 to 49363 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,013 DEBUG Processing 480/658 atomic regions from SNP 143739 to 144339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,037 DEBUG Processing 232/594 atomic regions from SNP 69318 to 69918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,115 DEBUG Processing 164/557 atomic regions from SNP 49063 to 49664 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,225 DEBUG Processing 481/658 atomic regions from SNP 144039 to 144639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,238 DEBUG Processing 233/594 atomic regions from SNP 69618 to 70218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,308 DEBUG Processing 165/557 atomic regions from SNP 49364 to 49965 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,434 DEBUG Processing 482/658 atomic regions from SNP 144339 to 144939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,441 DEBUG Processing 234/594 atomic regions from SNP 69918 to 70518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,505 DEBUG Processing 166/557 atomic regions from SNP 49665 to 50266 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,651 DEBUG Processing 235/594 atomic regions from SNP 70218 to 70818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,655 DEBUG Processing 483/658 atomic regions from SNP 144639 to 145239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,711 DEBUG Processing 167/557 atomic regions from SNP 49966 to 50567 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:10,856 DEBUG Processing 236/594 atomic regions from SNP 70518 to 71118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:10,867 DEBUG Processing 484/658 atomic regions from SNP 144939 to 145539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:10,915 DEBUG Processing 168/557 atomic regions from SNP 50267 to 50868 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,058 DEBUG Processing 237/594 atomic regions from SNP 70818 to 71418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,079 DEBUG Processing 485/658 atomic regions from SNP 145239 to 145839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,129 DEBUG Processing 169/557 atomic regions from SNP 50568 to 51169 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,258 DEBUG Processing 238/594 atomic regions from SNP 71118 to 71718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,289 DEBUG Processing 486/658 atomic regions from SNP 145539 to 146139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,334 DEBUG Processing 170/557 atomic regions from SNP 50869 to 51470 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,458 DEBUG Processing 239/594 atomic regions from SNP 71418 to 72018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,508 DEBUG Processing 487/658 atomic regions from SNP 145839 to 146439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,531 DEBUG Processing 171/557 atomic regions from SNP 51170 to 51771 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,658 DEBUG Processing 240/594 atomic regions from SNP 71718 to 72318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,721 DEBUG Processing 488/658 atomic regions from SNP 146139 to 146739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,744 DEBUG Processing 172/557 atomic regions from SNP 51471 to 52072 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:11,859 DEBUG Processing 241/594 atomic regions from SNP 72018 to 72618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:11,932 DEBUG Processing 489/658 atomic regions from SNP 146439 to 147039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:11,966 DEBUG Processing 173/557 atomic regions from SNP 51772 to 52373 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,054 DEBUG Processing 242/594 atomic regions from SNP 72318 to 72918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,139 DEBUG Processing 490/658 atomic regions from SNP 146739 to 147339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,174 DEBUG Processing 174/557 atomic regions from SNP 52073 to 52674 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,250 DEBUG Processing 243/594 atomic regions from SNP 72618 to 73218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,350 DEBUG Processing 491/658 atomic regions from SNP 147039 to 147639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,405 DEBUG Processing 175/557 atomic regions from SNP 52374 to 52975 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,448 DEBUG Processing 244/594 atomic regions from SNP 72918 to 73518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,583 DEBUG Processing 492/658 atomic regions from SNP 147339 to 147939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,647 DEBUG Processing 176/557 atomic regions from SNP 52675 to 53276 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:12,653 DEBUG Processing 245/594 atomic regions from SNP 73218 to 73818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,815 DEBUG Processing 493/658 atomic regions from SNP 147639 to 148239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:12,856 DEBUG Processing 246/594 atomic regions from SNP 73518 to 74118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:12,872 DEBUG Processing 177/557 atomic regions from SNP 52976 to 53577 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,029 DEBUG Processing 494/658 atomic regions from SNP 147939 to 148539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,058 DEBUG Processing 247/594 atomic regions from SNP 73818 to 74418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,093 DEBUG Processing 178/557 atomic regions from SNP 53277 to 53878 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,169 DEBUG chr17: Estimating proportion of background vs signal 2025-01-31 09:57:13,248 DEBUG Processing 495/658 atomic regions from SNP 148239 to 148839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,261 DEBUG Processing 248/594 atomic regions from SNP 74118 to 74718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,308 DEBUG Processing 179/557 atomic regions from SNP 53578 to 54179 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,464 DEBUG Processing 496/658 atomic regions from SNP 148539 to 149139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,468 DEBUG Processing 249/594 atomic regions from SNP 74418 to 75018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,517 DEBUG Processing 180/557 atomic regions from SNP 53879 to 54480 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,676 DEBUG Processing 250/594 atomic regions from SNP 74718 to 75318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,682 DEBUG Processing 497/658 atomic regions from SNP 148839 to 149439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,732 DEBUG Processing 181/557 atomic regions from SNP 54180 to 54781 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:13,878 DEBUG Processing 251/594 atomic regions from SNP 75018 to 75618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:13,905 DEBUG Processing 498/658 atomic regions from SNP 149139 to 149739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:13,928 DEBUG Processing 182/557 atomic regions from SNP 54481 to 55082 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,077 DEBUG Processing 252/594 atomic regions from SNP 75318 to 75918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,115 DEBUG Processing 499/658 atomic regions from SNP 149439 to 150039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,123 DEBUG Processing 183/557 atomic regions from SNP 54782 to 55383 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,196 DEBUG Subchromosome time: 190.2389521440491, subchromosome SNPs: 202960 2025-01-31 09:57:14,197 DEBUG Estimated BADs: [0.95, 5.73, 19.09, 0.64, 19.09, 3.82, 0.32, 1.91, 3.82, 1.91, 3.82, 1.91, 7.64, 1.91, 3.82, 0.95, 5.73, 1.91, 3.82, 1.91, 19.09, 0.48, 3.82, 17.18, 0.95, 19.09, 0.64, 3.82, 1.91, 3.82, 1.91, 0.95, 3.82] SNP counts: [30410, 986, 563, 1732, 894, 2839, 4491, 10343, 8603, 8355, 15510, 4934, 2397, 4559, 5328, 2710, 2397, 11104, 4307, 5998, 125, 4543, 1363, 294, 3355, 86, 12117, 17911, 19938, 1997, 5669, 6287, 815] SNP IDs counts: [30410, 986, 563, 1732, 894, 2839, 4491, 10343, 8603, 8355, 15510, 4934, 2397, 4559, 5328, 2710, 2397, 11104, 4307, 5998, 125, 4543, 1363, 294, 3355, 86, 12117, 17911, 19938, 1997, 5669, 6287, 815] Critical gap: 598094bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 21.16Mbp, 21.71Mbp, 22.05Mbp, 23.28Mbp, 23.77Mbp, 25.31Mbp, 28.01Mbp, 33.93Mbp, 38.61Mbp, 43.17Mbp, 51.83Mbp, 54.44Mbp, 55.71Mbp, 58.11Mbp, 60.96Mbp, 63.09Mbp, 64.37Mbp, 72.29Mbp, 74.62Mbp, 78.15Mbp, 78.21Mbp, 80.88Mbp, 81.62Mbp, 81.78Mbp, 83.69Mbp, 83.74Mbp, 90.88Mbp, 100.64Mbp, 111.68Mbp, 112.74Mbp, 115.82Mbp, 119.41Mbp, 120.42Mbp] 2025-01-31 09:57:14,197 DEBUG chr13 time: 190.23947224207222 s 2025-01-31 09:57:14,274 DEBUG Processing 253/594 atomic regions from SNP 75618 to 76218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,319 DEBUG Processing 184/557 atomic regions from SNP 55083 to 55684 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,324 DEBUG Processing 500/658 atomic regions from SNP 149739 to 150339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,330 DEBUG chr13: Fitting background model for 33 segments 2025-01-31 09:57:14,473 DEBUG Processing 254/594 atomic regions from SNP 75918 to 76518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,526 DEBUG Processing 185/557 atomic regions from SNP 55384 to 55985 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,533 DEBUG Processing 501/658 atomic regions from SNP 150039 to 150639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,669 DEBUG Processing 255/594 atomic regions from SNP 76218 to 76818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,719 DEBUG Processing 186/557 atomic regions from SNP 55685 to 56286 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,741 DEBUG Processing 502/658 atomic regions from SNP 150339 to 150939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:14,869 DEBUG Processing 256/594 atomic regions from SNP 76518 to 77118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:14,918 DEBUG Processing 187/557 atomic regions from SNP 55986 to 56587 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:14,953 DEBUG Processing 503/658 atomic regions from SNP 150639 to 151239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,070 DEBUG Processing 257/594 atomic regions from SNP 76818 to 77418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,114 DEBUG Processing 188/557 atomic regions from SNP 56287 to 56888 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,165 DEBUG Processing 504/658 atomic regions from SNP 150939 to 151539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,273 DEBUG Processing 258/594 atomic regions from SNP 77118 to 77718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,316 DEBUG Processing 189/557 atomic regions from SNP 56588 to 57189 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,379 DEBUG Processing 505/658 atomic regions from SNP 151239 to 151839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,471 DEBUG Processing 259/594 atomic regions from SNP 77418 to 78018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,512 DEBUG Processing 190/557 atomic regions from SNP 56889 to 57490 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,587 DEBUG Processing 506/658 atomic regions from SNP 151539 to 152139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,669 DEBUG Processing 260/594 atomic regions from SNP 77718 to 78318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,706 DEBUG Processing 191/557 atomic regions from SNP 57190 to 57791 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:15,798 DEBUG Processing 507/658 atomic regions from SNP 151839 to 152439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:15,871 DEBUG Processing 261/594 atomic regions from SNP 78018 to 78618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:15,899 DEBUG Processing 192/557 atomic regions from SNP 57491 to 58092 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,004 DEBUG Processing 508/658 atomic regions from SNP 152139 to 152739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,075 DEBUG Processing 262/594 atomic regions from SNP 78318 to 78918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,094 DEBUG Processing 193/557 atomic regions from SNP 57792 to 58393 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,211 DEBUG Processing 509/658 atomic regions from SNP 152439 to 153039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,280 DEBUG Processing 263/594 atomic regions from SNP 78618 to 79218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,291 DEBUG Processing 194/557 atomic regions from SNP 58093 to 58694 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,420 DEBUG Processing 510/658 atomic regions from SNP 152739 to 153339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,483 DEBUG Processing 264/594 atomic regions from SNP 78918 to 79518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,489 DEBUG Processing 195/557 atomic regions from SNP 58394 to 58995 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,632 DEBUG Processing 511/658 atomic regions from SNP 153039 to 153639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,689 DEBUG Processing 265/594 atomic regions from SNP 79218 to 79818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,696 DEBUG Processing 196/557 atomic regions from SNP 58695 to 59296 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:16,841 DEBUG Processing 512/658 atomic regions from SNP 153339 to 153939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:16,894 DEBUG Processing 266/594 atomic regions from SNP 79518 to 80118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:16,911 DEBUG Processing 197/557 atomic regions from SNP 58996 to 59597 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,050 DEBUG Processing 513/658 atomic regions from SNP 153639 to 154239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,097 DEBUG Processing 267/594 atomic regions from SNP 79818 to 80418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,127 DEBUG Processing 198/557 atomic regions from SNP 59297 to 59898 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,259 DEBUG Processing 514/658 atomic regions from SNP 153939 to 154539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,299 DEBUG Processing 268/594 atomic regions from SNP 80118 to 80718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,321 DEBUG Processing 199/557 atomic regions from SNP 59598 to 60199 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,468 DEBUG Processing 515/658 atomic regions from SNP 154239 to 154839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,504 DEBUG Processing 269/594 atomic regions from SNP 80418 to 81018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,517 DEBUG Processing 200/557 atomic regions from SNP 59899 to 60500 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,692 DEBUG Processing 516/658 atomic regions from SNP 154539 to 155139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,722 DEBUG Processing 270/594 atomic regions from SNP 80718 to 81318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,724 DEBUG Processing 201/557 atomic regions from SNP 60200 to 60801 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:17,904 DEBUG Processing 517/658 atomic regions from SNP 154839 to 155439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:17,927 DEBUG Processing 271/594 atomic regions from SNP 81018 to 81618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:17,928 DEBUG Processing 202/557 atomic regions from SNP 60501 to 61102 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,115 DEBUG Processing 518/658 atomic regions from SNP 155139 to 155739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,133 DEBUG Processing 272/594 atomic regions from SNP 81318 to 81918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,138 DEBUG Processing 203/557 atomic regions from SNP 60802 to 61403 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,340 DEBUG Processing 273/594 atomic regions from SNP 81618 to 82218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,341 DEBUG Processing 204/557 atomic regions from SNP 61103 to 61704 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,346 DEBUG Processing 519/658 atomic regions from SNP 155439 to 156039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,543 DEBUG Processing 205/557 atomic regions from SNP 61404 to 62005 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,549 DEBUG Processing 274/594 atomic regions from SNP 81918 to 82518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,564 DEBUG Processing 520/658 atomic regions from SNP 155739 to 156339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,742 DEBUG Processing 206/557 atomic regions from SNP 61705 to 62306 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,755 DEBUG Processing 275/594 atomic regions from SNP 82218 to 82818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,779 DEBUG Processing 521/658 atomic regions from SNP 156039 to 156639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:18,948 DEBUG Processing 207/557 atomic regions from SNP 62006 to 62607 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:18,958 DEBUG Processing 276/594 atomic regions from SNP 82518 to 83118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:18,988 DEBUG Processing 522/658 atomic regions from SNP 156339 to 156939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,161 DEBUG Processing 208/557 atomic regions from SNP 62307 to 62908 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,164 DEBUG Processing 277/594 atomic regions from SNP 82818 to 83418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,200 DEBUG Processing 523/658 atomic regions from SNP 156639 to 157239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,285 DEBUG Subchromosome time: 219.40819295402616, subchromosome SNPs: 211647 2025-01-31 09:57:19,285 DEBUG Estimated BADs: [20.39, 4.08, 1.02, 0.23, 1.02, 0.20, 1.02, 0.34, 2.04, 0.29, 2.04, 0.51, 1.02, 0.41, 14.27, 2.04, 4.08, 2.04, 16.31, 6.12, 2.04, 20.39, 4.08, 2.04, 4.08, 1.02, 0.29, 2.04, 4.08, 8.15, 2.04, 6.12, 2.04, 4.08, 2.04, 0.41, 1.02, 6.12] SNP counts: [145, 6546, 4232, 3006, 2401, 5434, 2150, 3555, 8868, 7104, 13210, 13878, 5276, 2190, 193, 17923, 6502, 11947, 1996, 1945, 6450, 118, 8973, 5608, 12689, 2090, 4189, 1708, 5051, 3764, 2443, 5437, 5313, 4524, 3883, 3283, 4924, 12699] SNP IDs counts: [145, 6546, 4232, 3006, 2401, 5434, 2150, 3555, 8868, 7104, 13210, 13878, 5276, 2190, 193, 17923, 6502, 11947, 1996, 1945, 6450, 118, 8973, 5608, 12689, 2090, 4189, 1708, 5051, 3764, 2443, 5437, 5313, 4524, 3883, 3283, 4924, 12699] Critical gap: 593520bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 3.20Mbp, 6.78Mbp, 9.25Mbp, 11.14Mbp, 12.53Mbp, 16.01Mbp, 17.30Mbp, 19.45Mbp, 24.37Mbp, 28.74Mbp, 36.25Mbp, 44.45Mbp, 47.45Mbp, 48.77Mbp, 48.88Mbp, 58.90Mbp, 62.45Mbp, 68.97Mbp, 70.02Mbp, 71.08Mbp, 74.83Mbp, 74.90Mbp, 79.70Mbp, 82.75Mbp, 89.62Mbp, 90.79Mbp, 93.26Mbp, 94.21Mbp, 96.90Mbp, 98.90Mbp, 100.27Mbp, 103.17Mbp, 106.06Mbp, 108.50Mbp, 110.61Mbp, 112.48Mbp, 115.15Mbp, 122.08Mbp] 2025-01-31 09:57:19,286 DEBUG chr11 time: 219.4089018899249 s 2025-01-31 09:57:19,371 DEBUG Processing 278/594 atomic regions from SNP 83118 to 83718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,387 DEBUG Processing 209/557 atomic regions from SNP 62608 to 63209 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,411 DEBUG Processing 524/658 atomic regions from SNP 156939 to 157539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,417 DEBUG chr11: Fitting background model for 38 segments 2025-01-31 09:57:19,573 DEBUG Processing 279/594 atomic regions from SNP 83418 to 84018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,612 DEBUG Processing 210/557 atomic regions from SNP 62909 to 63510 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,623 DEBUG Processing 525/658 atomic regions from SNP 157239 to 157839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,773 DEBUG Processing 280/594 atomic regions from SNP 83718 to 84318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:19,826 DEBUG Processing 211/557 atomic regions from SNP 63210 to 63811 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:19,838 DEBUG Processing 526/658 atomic regions from SNP 157539 to 158139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:19,977 DEBUG Processing 281/594 atomic regions from SNP 84018 to 84618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,044 DEBUG Processing 212/557 atomic regions from SNP 63511 to 64112 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,060 DEBUG Processing 527/658 atomic regions from SNP 157839 to 158439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,190 DEBUG Processing 282/594 atomic regions from SNP 84318 to 84918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,270 DEBUG Processing 213/557 atomic regions from SNP 63812 to 64413 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,274 DEBUG Processing 528/658 atomic regions from SNP 158139 to 158739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,402 DEBUG Processing 283/594 atomic regions from SNP 84618 to 85218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,499 DEBUG Processing 529/658 atomic regions from SNP 158439 to 159039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,505 DEBUG Processing 214/557 atomic regions from SNP 64113 to 64714 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,610 DEBUG Processing 284/594 atomic regions from SNP 84918 to 85518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,708 DEBUG Processing 530/658 atomic regions from SNP 158739 to 159339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:20,719 DEBUG Processing 215/557 atomic regions from SNP 64414 to 65015 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,819 DEBUG Processing 285/594 atomic regions from SNP 85218 to 85818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:20,924 DEBUG Processing 216/557 atomic regions from SNP 64715 to 65316 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:20,926 DEBUG Processing 531/658 atomic regions from SNP 159039 to 159639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,021 DEBUG Processing 286/594 atomic regions from SNP 85518 to 86118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,120 DEBUG Processing 217/557 atomic regions from SNP 65016 to 65617 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,165 DEBUG Processing 532/658 atomic regions from SNP 159339 to 159939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,227 DEBUG Processing 287/594 atomic regions from SNP 85818 to 86418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,313 DEBUG Processing 218/557 atomic regions from SNP 65317 to 65918 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,384 DEBUG Processing 533/658 atomic regions from SNP 159639 to 160239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,437 DEBUG Processing 288/594 atomic regions from SNP 86118 to 86718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,511 DEBUG Processing 219/557 atomic regions from SNP 65618 to 66219 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,601 DEBUG Processing 534/658 atomic regions from SNP 159939 to 160539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,651 DEBUG Processing 289/594 atomic regions from SNP 86418 to 87018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,716 DEBUG Processing 220/557 atomic regions from SNP 65919 to 66520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:21,825 DEBUG Processing 535/658 atomic regions from SNP 160239 to 160839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:21,864 DEBUG Processing 290/594 atomic regions from SNP 86718 to 87318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:21,934 DEBUG Processing 221/557 atomic regions from SNP 66220 to 66820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,066 DEBUG Processing 536/658 atomic regions from SNP 160539 to 161139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,071 DEBUG Processing 291/594 atomic regions from SNP 87018 to 87618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,138 DEBUG Processing 222/557 atomic regions from SNP 66520 to 67120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,280 DEBUG Processing 292/594 atomic regions from SNP 87318 to 87918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,302 DEBUG Processing 537/658 atomic regions from SNP 160839 to 161439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,342 DEBUG Processing 223/557 atomic regions from SNP 66820 to 67420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,502 DEBUG Processing 293/594 atomic regions from SNP 87618 to 88218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,540 DEBUG Processing 538/658 atomic regions from SNP 161139 to 161739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,557 DEBUG Processing 224/557 atomic regions from SNP 67120 to 67720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,716 DEBUG Processing 294/594 atomic regions from SNP 87918 to 88518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,759 DEBUG Processing 225/557 atomic regions from SNP 67420 to 68020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,767 DEBUG Processing 539/658 atomic regions from SNP 161439 to 162039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:22,924 DEBUG Processing 295/594 atomic regions from SNP 88218 to 88818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:22,960 DEBUG Processing 226/557 atomic regions from SNP 67720 to 68320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:22,998 DEBUG Processing 540/658 atomic regions from SNP 161739 to 162339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,128 DEBUG Processing 296/594 atomic regions from SNP 88518 to 89118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,163 DEBUG Processing 227/557 atomic regions from SNP 68020 to 68620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,241 DEBUG Processing 541/658 atomic regions from SNP 162039 to 162639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,342 DEBUG Processing 297/594 atomic regions from SNP 88818 to 89418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,364 DEBUG Processing 228/557 atomic regions from SNP 68320 to 68920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,487 DEBUG Processing 542/658 atomic regions from SNP 162339 to 162939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,550 DEBUG Processing 298/594 atomic regions from SNP 89118 to 89718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,563 DEBUG Processing 229/557 atomic regions from SNP 68620 to 69220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,718 DEBUG Processing 543/658 atomic regions from SNP 162639 to 163239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,767 DEBUG Processing 299/594 atomic regions from SNP 89418 to 90018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:23,773 DEBUG Processing 230/557 atomic regions from SNP 68920 to 69520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,957 DEBUG Processing 544/658 atomic regions from SNP 162939 to 163539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:23,984 DEBUG Processing 231/557 atomic regions from SNP 69220 to 69820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:23,987 DEBUG Processing 300/594 atomic regions from SNP 89718 to 90318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,193 DEBUG Processing 232/557 atomic regions from SNP 69520 to 70120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,204 DEBUG Processing 545/658 atomic regions from SNP 163239 to 163839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,206 DEBUG Processing 301/594 atomic regions from SNP 90018 to 90618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,406 DEBUG Processing 233/557 atomic regions from SNP 69820 to 70420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,425 DEBUG Processing 302/594 atomic regions from SNP 90318 to 90918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,452 DEBUG Processing 546/658 atomic regions from SNP 163539 to 164139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,616 DEBUG Processing 234/557 atomic regions from SNP 70120 to 70720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,647 DEBUG Processing 303/594 atomic regions from SNP 90618 to 91218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,699 DEBUG Processing 547/658 atomic regions from SNP 163839 to 164439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:24,822 DEBUG Processing 235/557 atomic regions from SNP 70420 to 71020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:24,866 DEBUG Processing 304/594 atomic regions from SNP 90918 to 91518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:24,923 DEBUG Processing 548/658 atomic regions from SNP 164139 to 164739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,023 DEBUG Processing 236/557 atomic regions from SNP 70720 to 71320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,090 DEBUG Processing 305/594 atomic regions from SNP 91218 to 91818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,156 DEBUG Processing 549/658 atomic regions from SNP 164439 to 165039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,229 DEBUG Processing 237/557 atomic regions from SNP 71020 to 71620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,310 DEBUG Processing 306/594 atomic regions from SNP 91518 to 92118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,385 DEBUG Processing 550/658 atomic regions from SNP 164739 to 165339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,442 DEBUG Processing 238/557 atomic regions from SNP 71320 to 71920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,528 DEBUG Processing 307/594 atomic regions from SNP 91818 to 92418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,620 DEBUG Processing 551/658 atomic regions from SNP 165039 to 165639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,656 DEBUG Processing 239/557 atomic regions from SNP 71620 to 72220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,743 DEBUG Processing 308/594 atomic regions from SNP 92118 to 92718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:25,873 DEBUG Processing 240/557 atomic regions from SNP 71920 to 72520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:25,876 DEBUG Processing 552/658 atomic regions from SNP 165339 to 165939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:25,958 DEBUG Processing 309/594 atomic regions from SNP 92418 to 93018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,088 DEBUG Processing 241/557 atomic regions from SNP 72220 to 72820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,107 DEBUG Processing 553/658 atomic regions from SNP 165639 to 166239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,178 DEBUG Processing 310/594 atomic regions from SNP 92718 to 93318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,300 DEBUG Processing 242/557 atomic regions from SNP 72520 to 73120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,352 DEBUG Processing 554/658 atomic regions from SNP 165939 to 166539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,399 DEBUG Processing 311/594 atomic regions from SNP 93018 to 93618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,511 DEBUG Processing 243/557 atomic regions from SNP 72820 to 73420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,609 DEBUG Processing 555/658 atomic regions from SNP 166239 to 166839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,624 DEBUG Processing 312/594 atomic regions from SNP 93318 to 93918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,720 DEBUG Processing 244/557 atomic regions from SNP 73120 to 73720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:26,851 DEBUG Processing 313/594 atomic regions from SNP 93618 to 94218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:26,869 DEBUG Processing 556/658 atomic regions from SNP 166539 to 167139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:26,950 DEBUG Processing 245/557 atomic regions from SNP 73420 to 74020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,090 DEBUG Processing 314/594 atomic regions from SNP 93918 to 94518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,144 DEBUG Processing 557/658 atomic regions from SNP 166839 to 167439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,180 DEBUG Processing 246/557 atomic regions from SNP 73720 to 74320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,306 DEBUG Processing 315/594 atomic regions from SNP 94218 to 94818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,381 DEBUG Processing 558/658 atomic regions from SNP 167139 to 167739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,417 DEBUG Processing 247/557 atomic regions from SNP 74020 to 74620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,527 DEBUG Processing 316/594 atomic regions from SNP 94518 to 95118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,616 DEBUG Processing 559/658 atomic regions from SNP 167439 to 168039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,632 DEBUG Processing 248/557 atomic regions from SNP 74320 to 74920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,760 DEBUG Processing 317/594 atomic regions from SNP 94818 to 95418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:27,848 DEBUG Processing 249/557 atomic regions from SNP 74620 to 75220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:27,866 DEBUG Processing 560/658 atomic regions from SNP 167739 to 168339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:27,996 DEBUG Processing 318/594 atomic regions from SNP 95118 to 95718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,020 DEBUG chr17:0-94987271: Signal thresholds approximated 2025-01-31 09:57:28,022 DEBUG chr17: Signal quantile: 0.988. signal threshold: 15. Best RMSEA: 0.014 2025-01-31 09:57:28,062 DEBUG Processing 250/557 atomic regions from SNP 74920 to 75520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,121 DEBUG Processing 561/658 atomic regions from SNP 168039 to 168639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,233 DEBUG Processing 319/594 atomic regions from SNP 95418 to 96018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,277 DEBUG Processing 251/557 atomic regions from SNP 75220 to 75820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,351 DEBUG Processing 562/658 atomic regions from SNP 168339 to 168939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,450 DEBUG Processing 320/594 atomic regions from SNP 95718 to 96318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,491 DEBUG Processing 252/557 atomic regions from SNP 75520 to 76120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,581 DEBUG Processing 563/658 atomic regions from SNP 168639 to 169239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,671 DEBUG Processing 321/594 atomic regions from SNP 96018 to 96618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,703 DEBUG Processing 253/557 atomic regions from SNP 75820 to 76420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:28,807 DEBUG Processing 564/658 atomic regions from SNP 168939 to 169539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:28,895 DEBUG Processing 322/594 atomic regions from SNP 96318 to 96918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:28,921 DEBUG Processing 254/557 atomic regions from SNP 76120 to 76720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,036 DEBUG Processing 565/658 atomic regions from SNP 169239 to 169839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,128 DEBUG Processing 323/594 atomic regions from SNP 96618 to 97218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,134 DEBUG Processing 255/557 atomic regions from SNP 76420 to 77020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,263 DEBUG Processing 566/658 atomic regions from SNP 169539 to 170139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,345 DEBUG Processing 256/557 atomic regions from SNP 76720 to 77320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,370 DEBUG Processing 324/594 atomic regions from SNP 96918 to 97518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,488 DEBUG Processing 567/658 atomic regions from SNP 169839 to 170439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,552 DEBUG Processing 257/557 atomic regions from SNP 77020 to 77620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,601 DEBUG Processing 325/594 atomic regions from SNP 97218 to 97818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,709 DEBUG Processing 568/658 atomic regions from SNP 170139 to 170739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,758 DEBUG Processing 258/557 atomic regions from SNP 77320 to 77920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:29,821 DEBUG Processing 326/594 atomic regions from SNP 97518 to 98118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:29,922 DEBUG chr17 total SNP count: 159109 2025-01-31 09:57:29,922 DEBUG chr17 length: 94987271 2025-01-31 09:57:29,922 DEBUG ----------------------------------------- 2025-01-31 09:57:29,922 INFO Processing SNPs in chr17 2025-01-31 09:57:29,937 DEBUG Processing 569/658 atomic regions from SNP 170439 to 171039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:29,964 DEBUG Processing 259/557 atomic regions from SNP 77620 to 78220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,042 DEBUG Processing 327/594 atomic regions from SNP 97818 to 98418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,087 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 159109)] 2025-01-31 09:57:30,168 DEBUG Processing 260/557 atomic regions from SNP 77920 to 78520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,183 DEBUG Processing 570/658 atomic regions from SNP 170739 to 171339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,201 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:57:30,254 DEBUG Processing 328/594 atomic regions from SNP 98118 to 98718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,372 DEBUG Processing 261/557 atomic regions from SNP 78220 to 78820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,416 DEBUG Processing 571/658 atomic regions from SNP 171039 to 171639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,471 DEBUG Processing 329/594 atomic regions from SNP 98418 to 99018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,597 DEBUG Processing 262/557 atomic regions from SNP 78520 to 79120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,646 DEBUG Processing 572/658 atomic regions from SNP 171339 to 171939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,688 DEBUG Processing 330/594 atomic regions from SNP 98718 to 99318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,798 DEBUG Processing 263/557 atomic regions from SNP 78820 to 79420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:30,865 DEBUG Processing 573/658 atomic regions from SNP 171639 to 172239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:30,908 DEBUG Processing 331/594 atomic regions from SNP 99018 to 99618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:30,999 DEBUG Processing 264/557 atomic regions from SNP 79120 to 79720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,104 DEBUG Processing 574/658 atomic regions from SNP 171939 to 172539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,126 DEBUG Processing 332/594 atomic regions from SNP 99318 to 99918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,205 DEBUG Processing 265/557 atomic regions from SNP 79420 to 80020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,342 DEBUG Processing 333/594 atomic regions from SNP 99618 to 100218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,343 DEBUG Processing 575/658 atomic regions from SNP 172239 to 172839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,411 DEBUG Processing 266/557 atomic regions from SNP 79720 to 80320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,556 DEBUG Processing 334/594 atomic regions from SNP 99918 to 100518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,590 DEBUG Processing 576/658 atomic regions from SNP 172539 to 173139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,621 DEBUG Processing 267/557 atomic regions from SNP 80020 to 80620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,770 DEBUG Processing 335/594 atomic regions from SNP 100218 to 100818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:31,832 DEBUG Processing 268/557 atomic regions from SNP 80320 to 80920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:31,834 DEBUG Processing 577/658 atomic regions from SNP 172839 to 173439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:31,993 DEBUG Processing 336/594 atomic regions from SNP 100518 to 101118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,045 DEBUG Processing 269/557 atomic regions from SNP 80620 to 81220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,062 DEBUG Processing 578/658 atomic regions from SNP 173139 to 173739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,206 DEBUG Processing 337/594 atomic regions from SNP 100818 to 101418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,255 DEBUG Processing 270/557 atomic regions from SNP 80920 to 81520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,285 DEBUG Processing 579/658 atomic regions from SNP 173439 to 174039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,421 DEBUG Processing 338/594 atomic regions from SNP 101118 to 101718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,465 DEBUG Processing 271/557 atomic regions from SNP 81220 to 81820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,507 DEBUG Processing 580/658 atomic regions from SNP 173739 to 174339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,635 DEBUG Processing 339/594 atomic regions from SNP 101418 to 102018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,674 DEBUG Processing 272/557 atomic regions from SNP 81520 to 82120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,732 DEBUG Processing 581/658 atomic regions from SNP 174039 to 174639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:32,848 DEBUG Processing 340/594 atomic regions from SNP 101718 to 102318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:32,881 DEBUG Processing 273/557 atomic regions from SNP 81820 to 82420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:32,954 DEBUG Processing 582/658 atomic regions from SNP 174339 to 174939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,056 DEBUG Processing 341/594 atomic regions from SNP 102018 to 102618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,088 DEBUG Processing 274/557 atomic regions from SNP 82120 to 82720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,180 DEBUG Processing 583/658 atomic regions from SNP 174639 to 175239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,272 DEBUG Processing 342/594 atomic regions from SNP 102318 to 102918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,302 DEBUG Processing 275/557 atomic regions from SNP 82420 to 83020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,403 DEBUG Processing 584/658 atomic regions from SNP 174939 to 175539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,485 DEBUG Processing 343/594 atomic regions from SNP 102618 to 103218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,512 DEBUG Processing 276/557 atomic regions from SNP 82720 to 83320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,627 DEBUG Processing 585/658 atomic regions from SNP 175239 to 175839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,695 DEBUG Processing 344/594 atomic regions from SNP 102918 to 103518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,718 DEBUG Processing 277/557 atomic regions from SNP 83020 to 83620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:33,848 DEBUG Processing 586/658 atomic regions from SNP 175539 to 176139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:33,908 DEBUG Processing 345/594 atomic regions from SNP 103218 to 103818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:33,936 DEBUG Processing 278/557 atomic regions from SNP 83320 to 83920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,070 DEBUG Processing 587/658 atomic regions from SNP 175839 to 176439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,123 DEBUG Processing 346/594 atomic regions from SNP 103518 to 104118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,171 DEBUG Processing 279/557 atomic regions from SNP 83620 to 84220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,290 DEBUG Processing 588/658 atomic regions from SNP 176139 to 176739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,357 DEBUG Processing 347/594 atomic regions from SNP 103818 to 104418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,388 DEBUG Processing 280/557 atomic regions from SNP 83920 to 84520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,508 DEBUG Processing 589/658 atomic regions from SNP 176439 to 177039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,576 DEBUG Processing 348/594 atomic regions from SNP 104118 to 104718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,602 DEBUG Processing 281/557 atomic regions from SNP 84220 to 84820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,726 DEBUG Processing 590/658 atomic regions from SNP 176739 to 177339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:34,789 DEBUG Processing 349/594 atomic regions from SNP 104418 to 105018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:34,814 DEBUG Processing 282/557 atomic regions from SNP 84520 to 85120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:34,943 DEBUG Processing 591/658 atomic regions from SNP 177039 to 177639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,000 DEBUG Processing 350/594 atomic regions from SNP 104718 to 105318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,024 DEBUG Processing 283/557 atomic regions from SNP 84820 to 85420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,177 DEBUG Processing 592/658 atomic regions from SNP 177339 to 177939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,208 DEBUG Processing 351/594 atomic regions from SNP 105018 to 105618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,233 DEBUG Processing 284/557 atomic regions from SNP 85120 to 85720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,393 DEBUG Processing 593/658 atomic regions from SNP 177639 to 178239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,420 DEBUG Processing 352/594 atomic regions from SNP 105318 to 105918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,441 DEBUG Processing 285/557 atomic regions from SNP 85420 to 86020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,628 DEBUG Processing 594/658 atomic regions from SNP 177939 to 178539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,635 DEBUG Processing 353/594 atomic regions from SNP 105618 to 106218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,654 DEBUG Processing 286/557 atomic regions from SNP 85720 to 86320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:35,853 DEBUG Processing 354/594 atomic regions from SNP 105918 to 106518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:35,861 DEBUG Processing 595/658 atomic regions from SNP 178239 to 178839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:35,866 DEBUG Processing 287/557 atomic regions from SNP 86020 to 86620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,075 DEBUG Processing 355/594 atomic regions from SNP 106218 to 106818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,079 DEBUG Processing 288/557 atomic regions from SNP 86320 to 86920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,089 DEBUG Processing 596/658 atomic regions from SNP 178539 to 179139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,298 DEBUG Processing 289/557 atomic regions from SNP 86620 to 87220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,304 DEBUG Processing 356/594 atomic regions from SNP 106518 to 107118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,322 DEBUG Processing 597/658 atomic regions from SNP 178839 to 179439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,505 DEBUG Processing 290/557 atomic regions from SNP 86920 to 87520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,517 DEBUG Processing 357/594 atomic regions from SNP 106818 to 107418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,545 DEBUG Processing 598/658 atomic regions from SNP 179139 to 179739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,717 DEBUG Processing 291/557 atomic regions from SNP 87220 to 87820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,739 DEBUG Processing 358/594 atomic regions from SNP 107118 to 107718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,774 DEBUG Processing 599/658 atomic regions from SNP 179439 to 180039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:36,936 DEBUG Processing 292/557 atomic regions from SNP 87520 to 88120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:36,965 DEBUG Processing 359/594 atomic regions from SNP 107418 to 108018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:36,999 DEBUG Processing 600/658 atomic regions from SNP 179739 to 180339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,148 DEBUG Processing 293/557 atomic regions from SNP 87820 to 88420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,182 DEBUG Processing 360/594 atomic regions from SNP 107718 to 108318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,217 DEBUG Processing 601/658 atomic regions from SNP 180039 to 180639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,364 DEBUG Processing 294/557 atomic regions from SNP 88120 to 88720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,405 DEBUG Processing 361/594 atomic regions from SNP 108018 to 108618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,442 DEBUG Processing 602/658 atomic regions from SNP 180339 to 180939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,571 DEBUG Processing 295/557 atomic regions from SNP 88420 to 89020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,621 DEBUG Processing 362/594 atomic regions from SNP 108318 to 108918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,663 DEBUG Processing 603/658 atomic regions from SNP 180639 to 181239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,780 DEBUG Processing 296/557 atomic regions from SNP 88720 to 89320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:37,839 DEBUG Processing 363/594 atomic regions from SNP 108618 to 109218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:37,920 DEBUG Processing 604/658 atomic regions from SNP 180939 to 181539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:37,988 DEBUG Processing 297/557 atomic regions from SNP 89020 to 89620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,059 DEBUG Processing 364/594 atomic regions from SNP 108918 to 109518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,183 DEBUG Processing 605/658 atomic regions from SNP 181239 to 181839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,198 DEBUG Processing 298/557 atomic regions from SNP 89320 to 89920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,276 DEBUG Processing 365/594 atomic regions from SNP 109218 to 109818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,413 DEBUG Processing 299/557 atomic regions from SNP 89620 to 90220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,448 DEBUG Processing 606/658 atomic regions from SNP 181539 to 182139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,490 DEBUG Processing 366/594 atomic regions from SNP 109518 to 110118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,629 DEBUG Processing 300/557 atomic regions from SNP 89920 to 90520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,708 DEBUG Processing 367/594 atomic regions from SNP 109818 to 110418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,713 DEBUG Processing 607/658 atomic regions from SNP 181839 to 182439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:38,843 DEBUG Processing 301/557 atomic regions from SNP 90220 to 90820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:38,925 DEBUG Processing 368/594 atomic regions from SNP 110118 to 110718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:38,972 DEBUG Processing 608/658 atomic regions from SNP 182139 to 182739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,050 DEBUG Processing 302/557 atomic regions from SNP 90520 to 91120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,141 DEBUG Processing 369/594 atomic regions from SNP 110418 to 111018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,218 DEBUG Processing 609/658 atomic regions from SNP 182439 to 183039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,265 DEBUG Processing 303/557 atomic regions from SNP 90820 to 91420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,356 DEBUG Processing 370/594 atomic regions from SNP 110718 to 111318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,479 DEBUG Processing 610/658 atomic regions from SNP 182739 to 183339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,483 DEBUG Processing 304/557 atomic regions from SNP 91120 to 91720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,573 DEBUG Processing 371/594 atomic regions from SNP 111018 to 111618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,701 DEBUG Processing 305/557 atomic regions from SNP 91420 to 92020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:39,748 DEBUG Processing 611/658 atomic regions from SNP 183039 to 183639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:39,835 DEBUG Processing 372/594 atomic regions from SNP 111318 to 111918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:39,917 DEBUG Processing 306/557 atomic regions from SNP 91720 to 92320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,015 DEBUG Processing 612/658 atomic regions from SNP 183339 to 183939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,059 DEBUG Processing 373/594 atomic regions from SNP 111618 to 112218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,138 DEBUG Processing 307/557 atomic regions from SNP 92020 to 92620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,276 DEBUG Processing 374/594 atomic regions from SNP 111918 to 112518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,272 DEBUG Processing 613/658 atomic regions from SNP 183639 to 184239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,365 DEBUG Processing 308/557 atomic regions from SNP 92320 to 92920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,492 DEBUG Processing 375/594 atomic regions from SNP 112218 to 112818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,524 DEBUG Processing 614/658 atomic regions from SNP 183939 to 184539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,579 DEBUG Processing 309/557 atomic regions from SNP 92620 to 93220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,709 DEBUG Processing 376/594 atomic regions from SNP 112518 to 113118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:40,772 DEBUG Processing 615/658 atomic regions from SNP 184239 to 184839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:40,796 DEBUG Processing 310/557 atomic regions from SNP 92920 to 93520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:40,922 DEBUG Processing 377/594 atomic regions from SNP 112818 to 113418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,010 DEBUG Processing 616/658 atomic regions from SNP 184539 to 185139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,017 DEBUG Processing 311/557 atomic regions from SNP 93220 to 93820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,139 DEBUG Processing 378/594 atomic regions from SNP 113118 to 113718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,252 DEBUG Processing 617/658 atomic regions from SNP 184839 to 185439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,253 DEBUG Processing 312/557 atomic regions from SNP 93520 to 94120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,353 DEBUG Processing 379/594 atomic regions from SNP 113418 to 114018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,501 DEBUG Processing 313/557 atomic regions from SNP 93820 to 94420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,511 DEBUG Processing 618/658 atomic regions from SNP 185139 to 185739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,568 DEBUG Processing 380/594 atomic regions from SNP 113718 to 114318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,723 DEBUG Processing 314/557 atomic regions from SNP 94120 to 94720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:41,769 DEBUG Processing 619/658 atomic regions from SNP 185439 to 186039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:41,780 DEBUG Processing 381/594 atomic regions from SNP 114018 to 114618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:41,931 DEBUG Processing 315/557 atomic regions from SNP 94420 to 95020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,001 DEBUG Processing 382/594 atomic regions from SNP 114318 to 114918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,035 DEBUG Processing 620/658 atomic regions from SNP 185739 to 186339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,134 DEBUG Processing 316/557 atomic regions from SNP 94720 to 95320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,214 DEBUG Processing 383/594 atomic regions from SNP 114618 to 115218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,295 DEBUG Processing 621/658 atomic regions from SNP 186039 to 186639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,342 DEBUG Processing 317/557 atomic regions from SNP 95020 to 95620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,428 DEBUG Processing 384/594 atomic regions from SNP 114918 to 115518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,542 DEBUG Processing 622/658 atomic regions from SNP 186339 to 186939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,553 DEBUG Processing 318/557 atomic regions from SNP 95320 to 95920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,637 DEBUG Processing 385/594 atomic regions from SNP 115218 to 115818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,762 DEBUG Processing 319/557 atomic regions from SNP 95620 to 96220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,768 DEBUG Processing 623/658 atomic regions from SNP 186639 to 187239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:42,859 DEBUG Processing 386/594 atomic regions from SNP 115518 to 116118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:42,978 DEBUG Processing 320/557 atomic regions from SNP 95920 to 96520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:42,997 DEBUG Processing 624/658 atomic regions from SNP 186939 to 187539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,075 DEBUG Processing 387/594 atomic regions from SNP 115818 to 116418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,190 DEBUG Processing 321/557 atomic regions from SNP 96220 to 96820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,223 DEBUG Processing 625/658 atomic regions from SNP 187239 to 187839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,287 DEBUG Processing 388/594 atomic regions from SNP 116118 to 116718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,402 DEBUG Processing 322/557 atomic regions from SNP 96520 to 97120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,453 DEBUG Processing 626/658 atomic regions from SNP 187539 to 188139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,505 DEBUG Processing 389/594 atomic regions from SNP 116418 to 117018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,616 DEBUG Processing 323/557 atomic regions from SNP 96820 to 97420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,684 DEBUG Processing 627/658 atomic regions from SNP 187839 to 188439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,726 DEBUG Processing 390/594 atomic regions from SNP 116718 to 117318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:43,828 DEBUG Processing 324/557 atomic regions from SNP 97120 to 97720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:43,911 DEBUG Processing 628/658 atomic regions from SNP 188139 to 188739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:43,942 DEBUG Processing 391/594 atomic regions from SNP 117018 to 117618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,039 DEBUG Processing 325/557 atomic regions from SNP 97420 to 98020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,140 DEBUG Processing 629/658 atomic regions from SNP 188439 to 189039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,161 DEBUG Processing 392/594 atomic regions from SNP 117318 to 117918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,252 DEBUG Processing 326/557 atomic regions from SNP 97720 to 98320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,374 DEBUG Processing 630/658 atomic regions from SNP 188739 to 189339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,386 DEBUG Processing 393/594 atomic regions from SNP 117618 to 118218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,482 DEBUG Processing 327/557 atomic regions from SNP 98020 to 98620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,606 DEBUG Processing 631/658 atomic regions from SNP 189039 to 189639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,606 DEBUG Processing 394/594 atomic regions from SNP 117918 to 118518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,736 DEBUG Processing 328/557 atomic regions from SNP 98320 to 98920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:44,831 DEBUG Processing 395/594 atomic regions from SNP 118218 to 118818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:44,839 DEBUG Processing 632/658 atomic regions from SNP 189339 to 189939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:44,953 DEBUG Processing 329/557 atomic regions from SNP 98620 to 99220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,061 DEBUG Processing 396/594 atomic regions from SNP 118518 to 119118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,072 DEBUG Processing 633/658 atomic regions from SNP 189639 to 190239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,168 DEBUG Processing 330/557 atomic regions from SNP 98920 to 99520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,286 DEBUG Processing 397/594 atomic regions from SNP 118818 to 119418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,304 DEBUG Processing 634/658 atomic regions from SNP 189939 to 190539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,385 DEBUG Processing 331/557 atomic regions from SNP 99220 to 99820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,507 DEBUG Processing 398/594 atomic regions from SNP 119118 to 119718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,536 DEBUG Processing 635/658 atomic regions from SNP 190239 to 190839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,599 DEBUG Processing 332/557 atomic regions from SNP 99520 to 100120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,726 DEBUG Processing 399/594 atomic regions from SNP 119418 to 120018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,764 DEBUG Processing 636/658 atomic regions from SNP 190539 to 191139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:45,818 DEBUG Processing 333/557 atomic regions from SNP 99820 to 100420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:45,944 DEBUG Processing 400/594 atomic regions from SNP 119718 to 120318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:45,995 DEBUG Processing 637/658 atomic regions from SNP 190839 to 191439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,038 DEBUG Processing 334/557 atomic regions from SNP 100120 to 100720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,163 DEBUG Processing 401/594 atomic regions from SNP 120018 to 120618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,236 DEBUG Processing 638/658 atomic regions from SNP 191139 to 191739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,255 DEBUG Processing 335/557 atomic regions from SNP 100420 to 101020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,382 DEBUG Processing 402/594 atomic regions from SNP 120318 to 120918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,468 DEBUG Processing 639/658 atomic regions from SNP 191439 to 192039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,482 DEBUG Processing 336/557 atomic regions from SNP 100720 to 101320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,603 DEBUG Processing 403/594 atomic regions from SNP 120618 to 121218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,702 DEBUG Processing 337/557 atomic regions from SNP 101020 to 101620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,702 DEBUG Processing 640/658 atomic regions from SNP 191739 to 192339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:46,818 DEBUG Processing 404/594 atomic regions from SNP 120918 to 121518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:46,920 DEBUG Processing 338/557 atomic regions from SNP 101320 to 101920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:46,937 DEBUG Processing 641/658 atomic regions from SNP 192039 to 192639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,045 DEBUG Processing 405/594 atomic regions from SNP 121218 to 121818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,140 DEBUG Processing 339/557 atomic regions from SNP 101620 to 102220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,173 DEBUG Processing 642/658 atomic regions from SNP 192339 to 192939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,302 DEBUG Processing 406/594 atomic regions from SNP 121518 to 122118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,351 DEBUG Processing 340/557 atomic regions from SNP 101920 to 102520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,414 DEBUG Processing 643/658 atomic regions from SNP 192639 to 193239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,540 DEBUG Processing 407/594 atomic regions from SNP 121818 to 122418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,567 DEBUG Processing 341/557 atomic regions from SNP 102220 to 102820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,656 DEBUG Processing 644/658 atomic regions from SNP 192939 to 193539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,761 DEBUG Processing 408/594 atomic regions from SNP 122118 to 122718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,780 DEBUG Processing 342/557 atomic regions from SNP 102520 to 103120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:47,887 DEBUG Processing 645/658 atomic regions from SNP 193239 to 193839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:47,984 DEBUG Processing 409/594 atomic regions from SNP 122418 to 123018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:47,991 DEBUG Processing 343/557 atomic regions from SNP 102820 to 103420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,116 DEBUG Processing 646/658 atomic regions from SNP 193539 to 194139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,206 DEBUG Processing 344/557 atomic regions from SNP 103120 to 103720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,231 DEBUG Processing 410/594 atomic regions from SNP 122718 to 123318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,342 DEBUG Processing 647/658 atomic regions from SNP 193839 to 194439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,423 DEBUG Processing 345/557 atomic regions from SNP 103420 to 104020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,455 DEBUG Processing 411/594 atomic regions from SNP 123018 to 123618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,571 DEBUG Processing 648/658 atomic regions from SNP 194139 to 194739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,638 DEBUG Processing 346/557 atomic regions from SNP 103720 to 104320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,679 DEBUG Processing 412/594 atomic regions from SNP 123318 to 123918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:48,798 DEBUG Processing 649/658 atomic regions from SNP 194439 to 195039 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:48,849 DEBUG Processing 347/557 atomic regions from SNP 104020 to 104620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:48,896 DEBUG Processing 413/594 atomic regions from SNP 123618 to 124218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,050 DEBUG Processing 650/658 atomic regions from SNP 194739 to 195339 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,060 DEBUG Processing 348/557 atomic regions from SNP 104320 to 104920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,109 DEBUG Processing 414/594 atomic regions from SNP 123918 to 124518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,272 DEBUG Processing 349/557 atomic regions from SNP 104620 to 105220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,290 DEBUG Processing 651/658 atomic regions from SNP 195039 to 195639 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,328 DEBUG Processing 415/594 atomic regions from SNP 124218 to 124818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,493 DEBUG Processing 350/557 atomic regions from SNP 104920 to 105520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,523 DEBUG Processing 652/658 atomic regions from SNP 195339 to 195939 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,553 DEBUG Segmenting atomic regions: 2025-01-31 09:57:49,568 DEBUG Processing 416/594 atomic regions from SNP 124518 to 125118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,625 DEBUG Processing 1/529 atomic regions from SNP 0 to 601 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,707 DEBUG Processing 351/557 atomic regions from SNP 105220 to 105820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,751 DEBUG Processing 653/658 atomic regions from SNP 195639 to 196239 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:49,788 DEBUG Processing 417/594 atomic regions from SNP 124818 to 125418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:49,842 DEBUG Processing 2/529 atomic regions from SNP 301 to 902 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:49,924 DEBUG Processing 352/557 atomic regions from SNP 105520 to 106120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:49,982 DEBUG Processing 654/658 atomic regions from SNP 195939 to 196539 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,016 DEBUG Processing 418/594 atomic regions from SNP 125118 to 125718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,064 DEBUG Processing 3/529 atomic regions from SNP 602 to 1203 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,149 DEBUG Processing 353/557 atomic regions from SNP 105820 to 106420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,211 DEBUG Processing 655/658 atomic regions from SNP 196239 to 196839 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,235 DEBUG Processing 419/594 atomic regions from SNP 125418 to 126018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,280 DEBUG Processing 4/529 atomic regions from SNP 903 to 1504 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,363 DEBUG Processing 354/557 atomic regions from SNP 106120 to 106720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,440 DEBUG Processing 656/658 atomic regions from SNP 196539 to 197139 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,461 DEBUG Processing 420/594 atomic regions from SNP 125718 to 126318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,493 DEBUG Processing 5/529 atomic regions from SNP 1204 to 1805 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,576 DEBUG Processing 355/557 atomic regions from SNP 106420 to 107020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,674 DEBUG Processing 657/658 atomic regions from SNP 196839 to 197439 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,684 DEBUG Processing 421/594 atomic regions from SNP 126018 to 126618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,708 DEBUG Processing 6/529 atomic regions from SNP 1505 to 2106 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,782 DEBUG Processing 356/557 atomic regions from SNP 106720 to 107320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:50,919 DEBUG Processing 658/658 atomic regions from SNP 197139 to 197739 for chr12 (subchromosome 1 of 1). 2025-01-31 09:57:50,921 DEBUG Processing 422/594 atomic regions from SNP 126318 to 126918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:50,930 DEBUG Processing 7/529 atomic regions from SNP 1806 to 2407 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:50,992 DEBUG Processing 357/557 atomic regions from SNP 107020 to 107620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,069 DEBUG Unique SNPs positions in subchromosome 1: 197740 2025-01-31 09:57:51,145 DEBUG Processing 8/529 atomic regions from SNP 2107 to 2708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,178 DEBUG Processing 423/594 atomic regions from SNP 126618 to 127218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,209 DEBUG Processing 358/557 atomic regions from SNP 107320 to 107920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,365 DEBUG Processing 9/529 atomic regions from SNP 2408 to 3009 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,426 DEBUG Processing 359/557 atomic regions from SNP 107620 to 108220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,433 DEBUG Processing 424/594 atomic regions from SNP 126918 to 127518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,567 DEBUG Processing 10/529 atomic regions from SNP 2709 to 3310 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,641 DEBUG Processing 360/557 atomic regions from SNP 107920 to 108520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,690 DEBUG Processing 425/594 atomic regions from SNP 127218 to 127818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,768 DEBUG Processing 11/529 atomic regions from SNP 3010 to 3611 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:51,854 DEBUG Processing 361/557 atomic regions from SNP 108220 to 108820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:51,949 DEBUG Processing 426/594 atomic regions from SNP 127518 to 128118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:51,984 DEBUG Processing 12/529 atomic regions from SNP 3311 to 3912 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,061 DEBUG Processing 362/557 atomic regions from SNP 108520 to 109120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,205 DEBUG Processing 427/594 atomic regions from SNP 127818 to 128418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,210 DEBUG Processing 13/529 atomic regions from SNP 3612 to 4213 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,268 DEBUG Processing 363/557 atomic regions from SNP 108820 to 109420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,426 DEBUG Processing 14/529 atomic regions from SNP 3913 to 4514 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,460 DEBUG Processing 428/594 atomic regions from SNP 128118 to 128718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,477 DEBUG Processing 364/557 atomic regions from SNP 109120 to 109720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,633 DEBUG Processing 15/529 atomic regions from SNP 4214 to 4815 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,687 DEBUG Processing 365/557 atomic regions from SNP 109420 to 110020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,715 DEBUG Processing 429/594 atomic regions from SNP 128418 to 129018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:52,859 DEBUG Processing 16/529 atomic regions from SNP 4515 to 5116 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:52,896 DEBUG Processing 366/557 atomic regions from SNP 109720 to 110320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:52,954 DEBUG Processing 430/594 atomic regions from SNP 128718 to 129318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,073 DEBUG Processing 17/529 atomic regions from SNP 4816 to 5417 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,107 DEBUG Processing 367/557 atomic regions from SNP 110020 to 110620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,178 DEBUG Processing 431/594 atomic regions from SNP 129018 to 129618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,299 DEBUG Processing 18/529 atomic regions from SNP 5117 to 5718 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,320 DEBUG Processing 368/557 atomic regions from SNP 110320 to 110920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,420 DEBUG Processing 432/594 atomic regions from SNP 129318 to 129918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,522 DEBUG Processing 19/529 atomic regions from SNP 5418 to 6019 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,530 DEBUG Processing 369/557 atomic regions from SNP 110620 to 111220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,642 DEBUG Processing 433/594 atomic regions from SNP 129618 to 130218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,734 DEBUG Processing 20/529 atomic regions from SNP 5719 to 6320 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,738 DEBUG Processing 370/557 atomic regions from SNP 110920 to 111520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:53,868 DEBUG Processing 434/594 atomic regions from SNP 129918 to 130518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:53,944 DEBUG Processing 21/529 atomic regions from SNP 6020 to 6621 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:53,944 DEBUG Processing 371/557 atomic regions from SNP 111220 to 111820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,116 DEBUG Processing 435/594 atomic regions from SNP 130218 to 130818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,154 DEBUG Processing 372/557 atomic regions from SNP 111520 to 112120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,186 DEBUG Processing 22/529 atomic regions from SNP 6321 to 6922 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,359 DEBUG Processing 436/594 atomic regions from SNP 130518 to 131118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,370 DEBUG Processing 373/557 atomic regions from SNP 111820 to 112420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,404 DEBUG Processing 23/529 atomic regions from SNP 6622 to 7223 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,586 DEBUG Processing 374/557 atomic regions from SNP 112120 to 112720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,602 DEBUG Processing 437/594 atomic regions from SNP 130818 to 131418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:54,624 DEBUG Processing 24/529 atomic regions from SNP 6923 to 7524 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,804 DEBUG Processing 375/557 atomic regions from SNP 112420 to 113020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:54,844 DEBUG Processing 25/529 atomic regions from SNP 7224 to 7825 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:54,855 DEBUG Processing 438/594 atomic regions from SNP 131118 to 131718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,012 DEBUG Processing 376/557 atomic regions from SNP 112720 to 113320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,057 DEBUG Processing 26/529 atomic regions from SNP 7525 to 8126 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,111 DEBUG Processing 439/594 atomic regions from SNP 131418 to 132018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,217 DEBUG Processing 377/557 atomic regions from SNP 113020 to 113620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,269 DEBUG Processing 27/529 atomic regions from SNP 7826 to 8427 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,353 DEBUG Processing 440/594 atomic regions from SNP 131718 to 132318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,427 DEBUG Processing 378/557 atomic regions from SNP 113320 to 113920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,491 DEBUG Processing 28/529 atomic regions from SNP 8127 to 8728 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,600 DEBUG Processing 441/594 atomic regions from SNP 132018 to 132618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,637 DEBUG Processing 379/557 atomic regions from SNP 113620 to 114220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,703 DEBUG Processing 29/529 atomic regions from SNP 8428 to 9029 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:55,846 DEBUG Processing 380/557 atomic regions from SNP 113920 to 114520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:55,857 DEBUG Processing 442/594 atomic regions from SNP 132318 to 132918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:55,914 DEBUG Processing 30/529 atomic regions from SNP 8729 to 9330 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,053 DEBUG Processing 381/557 atomic regions from SNP 114220 to 114820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,109 DEBUG Processing 443/594 atomic regions from SNP 132618 to 133218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,126 DEBUG Processing 31/529 atomic regions from SNP 9030 to 9631 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,262 DEBUG Processing 382/557 atomic regions from SNP 114520 to 115120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,342 DEBUG Processing 32/529 atomic regions from SNP 9331 to 9932 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,360 DEBUG Processing 444/594 atomic regions from SNP 132918 to 133518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,471 DEBUG Processing 383/557 atomic regions from SNP 114820 to 115420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,559 DEBUG Processing 33/529 atomic regions from SNP 9632 to 10233 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,605 DEBUG Processing 445/594 atomic regions from SNP 133218 to 133818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,674 DEBUG Processing 384/557 atomic regions from SNP 115120 to 115720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,775 DEBUG Processing 34/529 atomic regions from SNP 9933 to 10534 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:56,852 DEBUG Processing 446/594 atomic regions from SNP 133518 to 134118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:56,889 DEBUG Processing 385/557 atomic regions from SNP 115420 to 116020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:56,999 DEBUG Processing 35/529 atomic regions from SNP 10234 to 10835 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,101 DEBUG Processing 386/557 atomic regions from SNP 115720 to 116320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,107 DEBUG Processing 447/594 atomic regions from SNP 133818 to 134418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,212 DEBUG Processing 36/529 atomic regions from SNP 10535 to 11136 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,308 DEBUG Processing 387/557 atomic regions from SNP 116020 to 116620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,342 DEBUG Processing 448/594 atomic regions from SNP 134118 to 134718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,420 DEBUG Processing 37/529 atomic regions from SNP 10836 to 11437 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,518 DEBUG Processing 388/557 atomic regions from SNP 116320 to 116920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,587 DEBUG Processing 449/594 atomic regions from SNP 134418 to 135018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,629 DEBUG Processing 38/529 atomic regions from SNP 11137 to 11738 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,720 DEBUG Processing 389/557 atomic regions from SNP 116620 to 117220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:57,838 DEBUG Processing 450/594 atomic regions from SNP 134718 to 135318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:57,843 DEBUG Processing 39/529 atomic regions from SNP 11438 to 12039 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:57,923 DEBUG Processing 390/557 atomic regions from SNP 116920 to 117520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,059 DEBUG Processing 40/529 atomic regions from SNP 11739 to 12340 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,062 DEBUG Processing 451/594 atomic regions from SNP 135018 to 135618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,132 DEBUG Processing 391/557 atomic regions from SNP 117220 to 117820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,271 DEBUG Processing 41/529 atomic regions from SNP 12040 to 12641 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,275 DEBUG Processing 452/594 atomic regions from SNP 135318 to 135918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,340 DEBUG Processing 392/557 atomic regions from SNP 117520 to 118120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,485 DEBUG Processing 42/529 atomic regions from SNP 12341 to 12942 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,514 DEBUG Processing 453/594 atomic regions from SNP 135618 to 136218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,563 DEBUG Processing 393/557 atomic regions from SNP 117820 to 118420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,684 DEBUG Processing 43/529 atomic regions from SNP 12642 to 13243 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,735 DEBUG Processing 454/594 atomic regions from SNP 135918 to 136518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,780 DEBUG Processing 394/557 atomic regions from SNP 118120 to 118720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:58,890 DEBUG Processing 44/529 atomic regions from SNP 12943 to 13544 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:58,901 DEBUG Subchromosome time: 183.3231498200912, subchromosome SNPs: 197740 2025-01-31 09:57:58,902 DEBUG Estimated BADs: [3.67, 0.61, 1.83, 0.92, 1.83, 9.16, 1.83, 0.31, 0.92, 3.67, 1.83, 0.37, 0.92, 3.67, 7.33, 1.83, 0.37, 1.83, 3.67, 1.83, 9.16, 0.92, 1.83] SNP counts: [4313, 2385, 5437, 8979, 9026, 609, 21580, 3893, 20710, 6620, 8376, 5083, 9935, 26091, 7523, 7769, 8097, 3980, 11932, 8504, 5441, 3101, 8356] SNP IDs counts: [4313, 2385, 5437, 8979, 9026, 609, 21580, 3893, 20710, 6620, 8376, 5083, 9935, 26091, 7523, 7769, 8097, 3980, 11932, 8504, 5441, 3101, 8356] Critical gap: 604411bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 5.42Mbp, 6.84Mbp, 9.93Mbp, 15.19Mbp, 24.53Mbp, 24.85Mbp, 36.70Mbp, 39.01Mbp, 51.49Mbp, 55.30Mbp, 60.09Mbp, 63.27Mbp, 69.15Mbp, 83.31Mbp, 87.27Mbp, 92.05Mbp, 97.00Mbp, 99.27Mbp, 105.85Mbp, 110.36Mbp, 113.22Mbp, 115.13Mbp, 120.13Mbp] 2025-01-31 09:57:58,902 DEBUG chr12 time: 183.3237392710289 s 2025-01-31 09:57:58,966 DEBUG Processing 455/594 atomic regions from SNP 136218 to 136818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:58,994 DEBUG Processing 395/557 atomic regions from SNP 118420 to 119020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,033 DEBUG chr12: Fitting background model for 23 segments 2025-01-31 09:57:59,097 DEBUG Processing 45/529 atomic regions from SNP 13244 to 13845 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,181 DEBUG Processing 456/594 atomic regions from SNP 136518 to 137118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,210 DEBUG Processing 396/557 atomic regions from SNP 118720 to 119320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,312 DEBUG Processing 46/529 atomic regions from SNP 13545 to 14146 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,410 DEBUG Processing 457/594 atomic regions from SNP 136818 to 137418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,428 DEBUG Processing 397/557 atomic regions from SNP 119020 to 119620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,520 DEBUG Processing 47/529 atomic regions from SNP 13846 to 14447 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,645 DEBUG Processing 398/557 atomic regions from SNP 119320 to 119920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,663 DEBUG Processing 458/594 atomic regions from SNP 137118 to 137718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,725 DEBUG Processing 48/529 atomic regions from SNP 14147 to 14748 for chr17 (subchromosome 1 of 1). 2025-01-31 09:57:59,861 DEBUG Processing 399/557 atomic regions from SNP 119620 to 120220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:57:59,914 DEBUG Processing 459/594 atomic regions from SNP 137418 to 138018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:57:59,933 DEBUG Processing 49/529 atomic regions from SNP 14448 to 15049 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,076 DEBUG Processing 400/557 atomic regions from SNP 119920 to 120520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,142 DEBUG Processing 50/529 atomic regions from SNP 14749 to 15350 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,170 DEBUG Processing 460/594 atomic regions from SNP 137718 to 138318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,286 DEBUG Processing 401/557 atomic regions from SNP 120220 to 120820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,346 DEBUG Processing 51/529 atomic regions from SNP 15050 to 15651 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,420 DEBUG Processing 461/594 atomic regions from SNP 138018 to 138618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,494 DEBUG Processing 402/557 atomic regions from SNP 120520 to 121120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,545 DEBUG Processing 52/529 atomic regions from SNP 15351 to 15952 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,662 DEBUG Processing 462/594 atomic regions from SNP 138318 to 138918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,700 DEBUG Processing 403/557 atomic regions from SNP 120820 to 121420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,743 DEBUG Processing 53/529 atomic regions from SNP 15652 to 16253 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:00,906 DEBUG Processing 404/557 atomic regions from SNP 121120 to 121720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:00,909 DEBUG Processing 463/594 atomic regions from SNP 138618 to 139218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:00,947 DEBUG Processing 54/529 atomic regions from SNP 15953 to 16554 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,111 DEBUG Processing 405/557 atomic regions from SNP 121420 to 122020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,145 DEBUG Processing 464/594 atomic regions from SNP 138918 to 139518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,148 DEBUG Processing 55/529 atomic regions from SNP 16254 to 16855 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,319 DEBUG Processing 406/557 atomic regions from SNP 121720 to 122320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,366 DEBUG Processing 465/594 atomic regions from SNP 139218 to 139818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,369 DEBUG Processing 56/529 atomic regions from SNP 16555 to 17156 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,522 DEBUG Processing 407/557 atomic regions from SNP 122020 to 122620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,579 DEBUG Processing 466/594 atomic regions from SNP 139518 to 140118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,593 DEBUG Processing 57/529 atomic regions from SNP 16856 to 17457 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,719 DEBUG Processing 408/557 atomic regions from SNP 122320 to 122920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:01,800 DEBUG Processing 58/529 atomic regions from SNP 17157 to 17758 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:01,800 DEBUG Processing 467/594 atomic regions from SNP 139818 to 140418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:01,921 DEBUG Processing 409/557 atomic regions from SNP 122620 to 123220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,006 DEBUG Processing 59/529 atomic regions from SNP 17458 to 18059 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,044 DEBUG Processing 468/594 atomic regions from SNP 140118 to 140718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,131 DEBUG Processing 410/557 atomic regions from SNP 122920 to 123520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,207 DEBUG Processing 60/529 atomic regions from SNP 17759 to 18360 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,274 DEBUG Processing 469/594 atomic regions from SNP 140418 to 141018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,337 DEBUG Processing 411/557 atomic regions from SNP 123220 to 123820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,407 DEBUG Processing 61/529 atomic regions from SNP 18060 to 18661 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,515 DEBUG Processing 470/594 atomic regions from SNP 140718 to 141318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,545 DEBUG Processing 412/557 atomic regions from SNP 123520 to 124120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,614 DEBUG Processing 62/529 atomic regions from SNP 18361 to 18962 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,750 DEBUG Processing 471/594 atomic regions from SNP 141018 to 141618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:02,752 DEBUG Processing 413/557 atomic regions from SNP 123820 to 124420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,814 DEBUG Processing 63/529 atomic regions from SNP 18662 to 19263 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:02,963 DEBUG Processing 414/557 atomic regions from SNP 124120 to 124720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:02,969 DEBUG Processing 472/594 atomic regions from SNP 141318 to 141918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,018 DEBUG Processing 64/529 atomic regions from SNP 18963 to 19564 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,171 DEBUG Processing 415/557 atomic regions from SNP 124420 to 125020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,180 DEBUG Processing 473/594 atomic regions from SNP 141618 to 142218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,223 DEBUG Processing 65/529 atomic regions from SNP 19264 to 19865 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,378 DEBUG Processing 416/557 atomic regions from SNP 124720 to 125320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,409 DEBUG Processing 474/594 atomic regions from SNP 141918 to 142518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,445 DEBUG Processing 66/529 atomic regions from SNP 19565 to 20166 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,576 DEBUG Processing 417/557 atomic regions from SNP 125020 to 125620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,641 DEBUG Processing 475/594 atomic regions from SNP 142218 to 142818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,656 DEBUG Processing 67/529 atomic regions from SNP 19866 to 20467 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,771 DEBUG Processing 418/557 atomic regions from SNP 125320 to 125920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:03,856 DEBUG Processing 68/529 atomic regions from SNP 20167 to 20768 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:03,866 DEBUG Processing 476/594 atomic regions from SNP 142518 to 143118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:03,963 DEBUG Processing 419/557 atomic regions from SNP 125620 to 126220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,055 DEBUG Processing 69/529 atomic regions from SNP 20468 to 21069 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,080 DEBUG Processing 477/594 atomic regions from SNP 142818 to 143418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,158 DEBUG Processing 420/557 atomic regions from SNP 125920 to 126520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,252 DEBUG Processing 70/529 atomic regions from SNP 20769 to 21370 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,306 DEBUG Processing 478/594 atomic regions from SNP 143118 to 143718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,352 DEBUG Processing 421/557 atomic regions from SNP 126220 to 126820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,450 DEBUG Processing 71/529 atomic regions from SNP 21070 to 21671 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,531 DEBUG Processing 479/594 atomic regions from SNP 143418 to 144018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,552 DEBUG Processing 422/557 atomic regions from SNP 126520 to 127120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,656 DEBUG Processing 72/529 atomic regions from SNP 21371 to 21972 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,738 DEBUG Processing 480/594 atomic regions from SNP 143718 to 144318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,757 DEBUG Processing 423/557 atomic regions from SNP 126820 to 127420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:04,862 DEBUG Processing 73/529 atomic regions from SNP 21672 to 22273 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:04,952 DEBUG Processing 481/594 atomic regions from SNP 144018 to 144618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:04,965 DEBUG Processing 424/557 atomic regions from SNP 127120 to 127720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,067 DEBUG Processing 74/529 atomic regions from SNP 21973 to 22574 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,167 DEBUG Processing 482/594 atomic regions from SNP 144318 to 144918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,173 DEBUG Processing 425/557 atomic regions from SNP 127420 to 128020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,272 DEBUG Processing 75/529 atomic regions from SNP 22274 to 22875 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,379 DEBUG Processing 426/557 atomic regions from SNP 127720 to 128320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,389 DEBUG Processing 483/594 atomic regions from SNP 144618 to 145218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,477 DEBUG Processing 76/529 atomic regions from SNP 22575 to 23176 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,585 DEBUG Processing 427/557 atomic regions from SNP 128020 to 128620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,634 DEBUG Processing 484/594 atomic regions from SNP 144918 to 145518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,680 DEBUG Processing 77/529 atomic regions from SNP 22876 to 23477 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:05,790 DEBUG Processing 428/557 atomic regions from SNP 128320 to 128920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:05,872 DEBUG Processing 485/594 atomic regions from SNP 145218 to 145818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:05,883 DEBUG Processing 78/529 atomic regions from SNP 23177 to 23778 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,005 DEBUG Processing 429/557 atomic regions from SNP 128620 to 129220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,083 DEBUG Processing 79/529 atomic regions from SNP 23478 to 24079 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,096 DEBUG Processing 486/594 atomic regions from SNP 145518 to 146118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,218 DEBUG Processing 430/557 atomic regions from SNP 128920 to 129520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,288 DEBUG Processing 80/529 atomic regions from SNP 23779 to 24380 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,308 DEBUG Processing 487/594 atomic regions from SNP 145818 to 146418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,435 DEBUG Processing 431/557 atomic regions from SNP 129220 to 129820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,499 DEBUG Processing 81/529 atomic regions from SNP 24080 to 24681 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,527 DEBUG Processing 488/594 atomic regions from SNP 146118 to 146718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,657 DEBUG Processing 432/557 atomic regions from SNP 129520 to 130120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,715 DEBUG Processing 82/529 atomic regions from SNP 24381 to 24982 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,755 DEBUG Processing 489/594 atomic regions from SNP 146418 to 147018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:06,909 DEBUG Processing 433/557 atomic regions from SNP 129820 to 130420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:06,932 DEBUG Processing 83/529 atomic regions from SNP 24682 to 25283 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:06,983 DEBUG Processing 490/594 atomic regions from SNP 146718 to 147318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,127 DEBUG Processing 434/557 atomic regions from SNP 130120 to 130720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,144 DEBUG Processing 84/529 atomic regions from SNP 24983 to 25584 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,213 DEBUG Processing 491/594 atomic regions from SNP 147018 to 147618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,347 DEBUG Processing 435/557 atomic regions from SNP 130420 to 131020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,355 DEBUG Processing 85/529 atomic regions from SNP 25284 to 25885 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,443 DEBUG Processing 492/594 atomic regions from SNP 147318 to 147918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,560 DEBUG Processing 86/529 atomic regions from SNP 25585 to 26186 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,570 DEBUG Processing 436/557 atomic regions from SNP 130720 to 131320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,668 DEBUG Processing 493/594 atomic regions from SNP 147618 to 148218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,770 DEBUG Processing 87/529 atomic regions from SNP 25886 to 26487 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:07,787 DEBUG Processing 437/557 atomic regions from SNP 131020 to 131620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:07,889 DEBUG Processing 494/594 atomic regions from SNP 147918 to 148518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:07,984 DEBUG Processing 88/529 atomic regions from SNP 26187 to 26788 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,005 DEBUG Processing 438/557 atomic regions from SNP 131320 to 131920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,111 DEBUG Processing 495/594 atomic regions from SNP 148218 to 148818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,196 DEBUG Processing 89/529 atomic regions from SNP 26488 to 27089 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,215 DEBUG Processing 439/557 atomic regions from SNP 131620 to 132220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,332 DEBUG Processing 496/594 atomic regions from SNP 148518 to 149118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,415 DEBUG Processing 90/529 atomic regions from SNP 26789 to 27390 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,425 DEBUG Processing 440/557 atomic regions from SNP 131920 to 132520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,554 DEBUG Processing 497/594 atomic regions from SNP 148818 to 149418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,628 DEBUG Processing 91/529 atomic regions from SNP 27090 to 27691 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,644 DEBUG Processing 441/557 atomic regions from SNP 132220 to 132820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,769 DEBUG Processing 498/594 atomic regions from SNP 149118 to 149718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:08,841 DEBUG Processing 92/529 atomic regions from SNP 27391 to 27992 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:08,860 DEBUG Processing 442/557 atomic regions from SNP 132520 to 133120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:08,979 DEBUG Processing 499/594 atomic regions from SNP 149418 to 150018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,049 DEBUG Processing 93/529 atomic regions from SNP 27692 to 28293 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,077 DEBUG Processing 443/557 atomic regions from SNP 132820 to 133420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,188 DEBUG Processing 500/594 atomic regions from SNP 149718 to 150318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,254 DEBUG Processing 94/529 atomic regions from SNP 27993 to 28594 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,290 DEBUG Processing 444/557 atomic regions from SNP 133120 to 133720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,398 DEBUG Processing 501/594 atomic regions from SNP 150018 to 150618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,459 DEBUG Processing 95/529 atomic regions from SNP 28294 to 28895 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,514 DEBUG Processing 445/557 atomic regions from SNP 133420 to 134020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,619 DEBUG Processing 502/594 atomic regions from SNP 150318 to 150918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,661 DEBUG Processing 96/529 atomic regions from SNP 28595 to 29196 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,733 DEBUG Processing 446/557 atomic regions from SNP 133720 to 134320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:09,874 DEBUG Processing 97/529 atomic regions from SNP 28896 to 29497 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:09,874 DEBUG Processing 503/594 atomic regions from SNP 150618 to 151218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:09,965 DEBUG Processing 447/557 atomic regions from SNP 134020 to 134620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,091 DEBUG Processing 98/529 atomic regions from SNP 29197 to 29798 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,129 DEBUG Processing 504/594 atomic regions from SNP 150918 to 151518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,189 DEBUG Processing 448/557 atomic regions from SNP 134320 to 134920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,303 DEBUG Processing 99/529 atomic regions from SNP 29498 to 30099 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,353 DEBUG Processing 505/594 atomic regions from SNP 151218 to 151818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,401 DEBUG Processing 449/557 atomic regions from SNP 134620 to 135220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,518 DEBUG Processing 100/529 atomic regions from SNP 29799 to 30400 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,602 DEBUG Processing 506/594 atomic regions from SNP 151518 to 152118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,612 DEBUG Processing 450/557 atomic regions from SNP 134920 to 135520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,732 DEBUG Processing 101/529 atomic regions from SNP 30100 to 30701 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:10,829 DEBUG Processing 451/557 atomic regions from SNP 135220 to 135820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:10,858 DEBUG Processing 507/594 atomic regions from SNP 151818 to 152418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:10,944 DEBUG Processing 102/529 atomic regions from SNP 30401 to 31002 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,046 DEBUG Processing 452/557 atomic regions from SNP 135520 to 136120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,089 DEBUG Processing 508/594 atomic regions from SNP 152118 to 152718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,154 DEBUG Processing 103/529 atomic regions from SNP 30702 to 31303 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,267 DEBUG Processing 453/557 atomic regions from SNP 135820 to 136420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,310 DEBUG Processing 509/594 atomic regions from SNP 152418 to 153018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,363 DEBUG Processing 104/529 atomic regions from SNP 31003 to 31604 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,486 DEBUG Processing 454/557 atomic regions from SNP 136120 to 136720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,535 DEBUG Processing 510/594 atomic regions from SNP 152718 to 153318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,572 DEBUG Processing 105/529 atomic regions from SNP 31304 to 31905 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,700 DEBUG Processing 455/557 atomic regions from SNP 136420 to 137020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,761 DEBUG Processing 511/594 atomic regions from SNP 153018 to 153618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,781 DEBUG Processing 106/529 atomic regions from SNP 31605 to 32206 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:11,919 DEBUG Processing 456/557 atomic regions from SNP 136720 to 137320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:11,987 DEBUG Processing 512/594 atomic regions from SNP 153318 to 153918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:11,994 DEBUG Processing 107/529 atomic regions from SNP 31906 to 32507 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,134 DEBUG Processing 457/557 atomic regions from SNP 137020 to 137620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,204 DEBUG Processing 108/529 atomic regions from SNP 32207 to 32808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,213 DEBUG Processing 513/594 atomic regions from SNP 153618 to 154218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,348 DEBUG Processing 458/557 atomic regions from SNP 137320 to 137920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,435 DEBUG Processing 514/594 atomic regions from SNP 153918 to 154518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,445 DEBUG Processing 109/529 atomic regions from SNP 32508 to 33108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,571 DEBUG Processing 459/557 atomic regions from SNP 137620 to 138220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,665 DEBUG Processing 515/594 atomic regions from SNP 154218 to 154818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,693 DEBUG Processing 110/529 atomic regions from SNP 32808 to 33408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:12,792 DEBUG Processing 460/557 atomic regions from SNP 137920 to 138520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:12,890 DEBUG Processing 516/594 atomic regions from SNP 154518 to 155118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:12,934 DEBUG Processing 111/529 atomic regions from SNP 33108 to 33708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,030 DEBUG Processing 461/557 atomic regions from SNP 138220 to 138820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,121 DEBUG Processing 517/594 atomic regions from SNP 154818 to 155418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,168 DEBUG Processing 112/529 atomic regions from SNP 33408 to 34008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,246 DEBUG Processing 462/557 atomic regions from SNP 138520 to 139120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,337 DEBUG Processing 518/594 atomic regions from SNP 155118 to 155718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,410 DEBUG Processing 113/529 atomic regions from SNP 33708 to 34308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,457 DEBUG Processing 463/557 atomic regions from SNP 138820 to 139420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,560 DEBUG Processing 519/594 atomic regions from SNP 155418 to 156018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,649 DEBUG Processing 114/529 atomic regions from SNP 34008 to 34608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:13,669 DEBUG Processing 464/557 atomic regions from SNP 139120 to 139720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,781 DEBUG Processing 520/594 atomic regions from SNP 155718 to 156318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:13,877 DEBUG Processing 465/557 atomic regions from SNP 139420 to 140020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:13,890 DEBUG Processing 115/529 atomic regions from SNP 34308 to 34908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,005 DEBUG Processing 521/594 atomic regions from SNP 156018 to 156618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,090 DEBUG Processing 466/557 atomic regions from SNP 139720 to 140320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,138 DEBUG Processing 116/529 atomic regions from SNP 34608 to 35208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,230 DEBUG Processing 522/594 atomic regions from SNP 156318 to 156918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,302 DEBUG Processing 467/557 atomic regions from SNP 140020 to 140620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,380 DEBUG Processing 117/529 atomic regions from SNP 34908 to 35508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,453 DEBUG Processing 523/594 atomic regions from SNP 156618 to 157218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,516 DEBUG Processing 468/557 atomic regions from SNP 140320 to 140920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,560 DEBUG chrY: Estimating proportion of background vs signal 2025-01-31 09:58:14,619 DEBUG Processing 118/529 atomic regions from SNP 35208 to 35808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,671 DEBUG Processing 524/594 atomic regions from SNP 156918 to 157518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,725 DEBUG Processing 469/557 atomic regions from SNP 140620 to 141220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:14,852 DEBUG Processing 119/529 atomic regions from SNP 35508 to 36108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:14,894 DEBUG Processing 525/594 atomic regions from SNP 157218 to 157818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:14,943 DEBUG Processing 470/557 atomic regions from SNP 140920 to 141520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,093 DEBUG Processing 120/529 atomic regions from SNP 35808 to 36408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,123 DEBUG Processing 526/594 atomic regions from SNP 157518 to 158118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,165 DEBUG Processing 471/557 atomic regions from SNP 141220 to 141820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,317 DEBUG Processing 121/529 atomic regions from SNP 36108 to 36708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,351 DEBUG Processing 527/594 atomic regions from SNP 157818 to 158418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,387 DEBUG Processing 472/557 atomic regions from SNP 141520 to 142120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,545 DEBUG Processing 122/529 atomic regions from SNP 36408 to 37008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,582 DEBUG Processing 528/594 atomic regions from SNP 158118 to 158718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,612 DEBUG Processing 473/557 atomic regions from SNP 141820 to 142420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:15,779 DEBUG Processing 123/529 atomic regions from SNP 36708 to 37308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:15,811 DEBUG Processing 529/594 atomic regions from SNP 158418 to 159018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:15,836 DEBUG Processing 474/557 atomic regions from SNP 142120 to 142720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,018 DEBUG Processing 124/529 atomic regions from SNP 37008 to 37608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,040 DEBUG Processing 530/594 atomic regions from SNP 158718 to 159318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,056 DEBUG Processing 475/557 atomic regions from SNP 142420 to 143020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,252 DEBUG Processing 125/529 atomic regions from SNP 37308 to 37908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,276 DEBUG Processing 476/557 atomic regions from SNP 142720 to 143320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,279 DEBUG Processing 531/594 atomic regions from SNP 159018 to 159618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,482 DEBUG Processing 126/529 atomic regions from SNP 37608 to 38208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,504 DEBUG Processing 532/594 atomic regions from SNP 159318 to 159918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,506 DEBUG Processing 477/557 atomic regions from SNP 143020 to 143620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,708 DEBUG Processing 127/529 atomic regions from SNP 37908 to 38508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,734 DEBUG Processing 478/557 atomic regions from SNP 143320 to 143920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,742 DEBUG Processing 533/594 atomic regions from SNP 159618 to 160218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:16,924 DEBUG Processing 128/529 atomic regions from SNP 38208 to 38808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:16,942 DEBUG Processing 479/557 atomic regions from SNP 143620 to 144220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:16,957 DEBUG Processing 534/594 atomic regions from SNP 159918 to 160518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,146 DEBUG Processing 129/529 atomic regions from SNP 38508 to 39108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,148 DEBUG Processing 480/557 atomic regions from SNP 143920 to 144520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,168 DEBUG Processing 535/594 atomic regions from SNP 160218 to 160818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,353 DEBUG Processing 481/557 atomic regions from SNP 144220 to 144820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,372 DEBUG Processing 130/529 atomic regions from SNP 38808 to 39408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,384 DEBUG Processing 536/594 atomic regions from SNP 160518 to 161118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,568 DEBUG Processing 482/557 atomic regions from SNP 144520 to 145120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,607 DEBUG Processing 537/594 atomic regions from SNP 160818 to 161418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,617 DEBUG Processing 131/529 atomic regions from SNP 39108 to 39708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,773 DEBUG Processing 483/557 atomic regions from SNP 144820 to 145420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:17,828 DEBUG Processing 538/594 atomic regions from SNP 161118 to 161718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:17,851 DEBUG Processing 132/529 atomic regions from SNP 39408 to 40008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:17,980 DEBUG Processing 484/557 atomic regions from SNP 145120 to 145720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,047 DEBUG Processing 539/594 atomic regions from SNP 161418 to 162018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,061 DEBUG Processing 133/529 atomic regions from SNP 39708 to 40308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,187 DEBUG Processing 485/557 atomic regions from SNP 145420 to 146020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,282 DEBUG Processing 540/594 atomic regions from SNP 161718 to 162318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,285 DEBUG Processing 134/529 atomic regions from SNP 40008 to 40608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,397 DEBUG Processing 486/557 atomic regions from SNP 145720 to 146320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,505 DEBUG Processing 541/594 atomic regions from SNP 162018 to 162618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,520 DEBUG Processing 135/529 atomic regions from SNP 40308 to 40908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,601 DEBUG Processing 487/557 atomic regions from SNP 146020 to 146620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,721 DEBUG Processing 542/594 atomic regions from SNP 162318 to 162918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,741 DEBUG Processing 136/529 atomic regions from SNP 40608 to 41208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:18,802 DEBUG Processing 488/557 atomic regions from SNP 146320 to 146920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:18,934 DEBUG Processing 543/594 atomic regions from SNP 162618 to 163218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:18,955 DEBUG Processing 137/529 atomic regions from SNP 40908 to 41508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,003 DEBUG Processing 489/557 atomic regions from SNP 146620 to 147220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,153 DEBUG Processing 544/594 atomic regions from SNP 162918 to 163518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,171 DEBUG Processing 138/529 atomic regions from SNP 41208 to 41808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,205 DEBUG Processing 490/557 atomic regions from SNP 146920 to 147520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,370 DEBUG Processing 545/594 atomic regions from SNP 163218 to 163818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,406 DEBUG Processing 139/529 atomic regions from SNP 41508 to 42108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,415 DEBUG Processing 491/557 atomic regions from SNP 147220 to 147820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,587 DEBUG Processing 546/594 atomic regions from SNP 163518 to 164118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,623 DEBUG Processing 140/529 atomic regions from SNP 41808 to 42408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,633 DEBUG Processing 492/557 atomic regions from SNP 147520 to 148120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:19,804 DEBUG Processing 547/594 atomic regions from SNP 163818 to 164418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:19,839 DEBUG Processing 141/529 atomic regions from SNP 42108 to 42708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:19,866 DEBUG Processing 493/557 atomic regions from SNP 147820 to 148420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,021 DEBUG Processing 548/594 atomic regions from SNP 164118 to 164718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,060 DEBUG Processing 142/529 atomic regions from SNP 42408 to 43008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,094 DEBUG Processing 494/557 atomic regions from SNP 148120 to 148720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,271 DEBUG Processing 549/594 atomic regions from SNP 164418 to 165018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,295 DEBUG Processing 143/529 atomic regions from SNP 42708 to 43308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,323 DEBUG Processing 495/557 atomic regions from SNP 148420 to 149020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,485 DEBUG Processing 550/594 atomic regions from SNP 164718 to 165318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,513 DEBUG Processing 144/529 atomic regions from SNP 43008 to 43608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,532 DEBUG Processing 496/557 atomic regions from SNP 148720 to 149320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,707 DEBUG Processing 551/594 atomic regions from SNP 165018 to 165618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,726 DEBUG Processing 145/529 atomic regions from SNP 43308 to 43908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:20,745 DEBUG Processing 497/557 atomic regions from SNP 149020 to 149620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,927 DEBUG Processing 552/594 atomic regions from SNP 165318 to 165918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:20,956 DEBUG Processing 498/557 atomic regions from SNP 149320 to 149920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:20,960 DEBUG Processing 146/529 atomic regions from SNP 43608 to 44208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,143 DEBUG Processing 553/594 atomic regions from SNP 165618 to 166218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,163 DEBUG Processing 499/557 atomic regions from SNP 149620 to 150220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,193 DEBUG Processing 147/529 atomic regions from SNP 43908 to 44508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,357 DEBUG Processing 554/594 atomic regions from SNP 165918 to 166518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,369 DEBUG Processing 500/557 atomic regions from SNP 149920 to 150520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,415 DEBUG Processing 148/529 atomic regions from SNP 44208 to 44808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,573 DEBUG Processing 555/594 atomic regions from SNP 166218 to 166818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,579 DEBUG Processing 501/557 atomic regions from SNP 150220 to 150820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,629 DEBUG Processing 149/529 atomic regions from SNP 44508 to 45108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,788 DEBUG Processing 556/594 atomic regions from SNP 166518 to 167118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:21,788 DEBUG Processing 502/557 atomic regions from SNP 150520 to 151120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:21,841 DEBUG Processing 150/529 atomic regions from SNP 44808 to 45408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:21,996 DEBUG Processing 503/557 atomic regions from SNP 150820 to 151420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,004 DEBUG Processing 557/594 atomic regions from SNP 166818 to 167418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,049 DEBUG Processing 151/529 atomic regions from SNP 45108 to 45708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,203 DEBUG Processing 504/557 atomic regions from SNP 151120 to 151720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,231 DEBUG Processing 558/594 atomic regions from SNP 167118 to 167718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,253 DEBUG Processing 152/529 atomic regions from SNP 45408 to 46008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,417 DEBUG Processing 505/557 atomic regions from SNP 151420 to 152020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,462 DEBUG Processing 559/594 atomic regions from SNP 167418 to 168018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,464 DEBUG Processing 153/529 atomic regions from SNP 45708 to 46308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,634 DEBUG Processing 506/557 atomic regions from SNP 151720 to 152320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,705 DEBUG Processing 154/529 atomic regions from SNP 46008 to 46608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,716 DEBUG Processing 560/594 atomic regions from SNP 167718 to 168318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:22,860 DEBUG Processing 507/557 atomic regions from SNP 152020 to 152620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:22,915 DEBUG Processing 155/529 atomic regions from SNP 46308 to 46908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:22,944 DEBUG Processing 561/594 atomic regions from SNP 168018 to 168618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,100 DEBUG Processing 508/557 atomic regions from SNP 152320 to 152920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,103 DEBUG chrY:0-91744698: Signal thresholds approximated 2025-01-31 09:58:23,105 DEBUG chrY: Signal quantile: 1.000. signal threshold: inf. Best RMSEA: nan 2025-01-31 09:58:23,129 DEBUG Processing 156/529 atomic regions from SNP 46608 to 47208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,167 DEBUG Processing 562/594 atomic regions from SNP 168318 to 168918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,346 DEBUG Processing 509/557 atomic regions from SNP 152620 to 153220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,353 DEBUG Processing 157/529 atomic regions from SNP 46908 to 47508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,414 DEBUG Processing 563/594 atomic regions from SNP 168618 to 169218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,560 DEBUG Processing 158/529 atomic regions from SNP 47208 to 47808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,586 DEBUG Processing 510/557 atomic regions from SNP 152920 to 153520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,670 DEBUG Processing 564/594 atomic regions from SNP 168918 to 169518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,769 DEBUG Processing 159/529 atomic regions from SNP 47508 to 48108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:23,803 DEBUG Processing 511/557 atomic regions from SNP 153220 to 153820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:23,928 DEBUG Processing 565/594 atomic regions from SNP 169218 to 169818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:23,985 DEBUG Processing 160/529 atomic regions from SNP 47808 to 48408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,023 DEBUG Processing 512/557 atomic regions from SNP 153520 to 154120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,183 DEBUG Processing 161/529 atomic regions from SNP 48108 to 48708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,183 DEBUG Processing 566/594 atomic regions from SNP 169518 to 170118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,274 DEBUG Processing 513/557 atomic regions from SNP 153820 to 154420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,390 DEBUG Processing 162/529 atomic regions from SNP 48408 to 49008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,428 DEBUG Processing 567/594 atomic regions from SNP 169818 to 170418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,520 DEBUG Processing 514/557 atomic regions from SNP 154120 to 154720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,594 DEBUG Processing 163/529 atomic regions from SNP 48708 to 49308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,668 DEBUG Processing 568/594 atomic regions from SNP 170118 to 170718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,757 DEBUG Processing 515/557 atomic regions from SNP 154420 to 155020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:24,819 DEBUG Processing 164/529 atomic regions from SNP 49008 to 49608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:24,918 DEBUG Processing 569/594 atomic regions from SNP 170418 to 171018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:24,961 DEBUG chrY total SNP count: 135 2025-01-31 09:58:24,961 DEBUG chrY length: 91744698 2025-01-31 09:58:24,961 DEBUG ----------------------------------------- 2025-01-31 09:58:24,961 INFO Processing SNPs in chrY 2025-01-31 09:58:24,962 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 1), (1, 15), (15, 25), (25, 39), (39, 50), (50, 57), (57, 66), (66, 69), (69, 70), (70, 79), (79, 87), (87, 89), (89, 91), (91, 92), (92, 135)] 2025-01-31 09:58:24,963 DEBUG Estimated BADs: [0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00, 0.00] SNP counts: [1, 14, 10, 14, 11, 7, 9, 3, 1, 9, 8, 2, 2, 1, 43] SNP IDs counts: [1, 14, 10, 14, 11, 7, 9, 3, 1, 9, 8, 2, 2, 1, 43] Critical gap: 14472bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[0.69Mbp], 0.69Mbp[0.31Mbp], 1.01Mbp[0.28Mbp], 1.30Mbp[0.65Mbp], 1.96Mbp[0.29Mbp], 2.26Mbp[0.50Mbp], 2.76Mbp[1.20Mbp], 3.97Mbp[1.58Mbp], 5.55Mbp[2.61Mbp], 8.15Mbp[1.53Mbp], 9.69Mbp[1.02Mbp], 10.71Mbp[12.01Mbp], 22.72Mbp[20.32Mbp], 43.04Mbp[43.70Mbp], 86.75Mbp[3.97Mbp], 90.75Mbp[1.00Mbp]] 2025-01-31 09:58:24,963 DEBUG chrY time: 0.0018005879828706384 s 2025-01-31 09:58:24,999 DEBUG Processing 516/557 atomic regions from SNP 154720 to 155320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,043 DEBUG Processing 165/529 atomic regions from SNP 49308 to 49908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,175 DEBUG Processing 570/594 atomic regions from SNP 170718 to 171318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,242 DEBUG Processing 166/529 atomic regions from SNP 49608 to 50208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,249 DEBUG Processing 517/557 atomic regions from SNP 155020 to 155620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,410 DEBUG Processing 571/594 atomic regions from SNP 171018 to 171618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,437 DEBUG Processing 167/529 atomic regions from SNP 49908 to 50508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,499 DEBUG Processing 518/557 atomic regions from SNP 155320 to 155920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,635 DEBUG Processing 168/529 atomic regions from SNP 50208 to 50808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,638 DEBUG Processing 572/594 atomic regions from SNP 171318 to 171918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:25,751 DEBUG Processing 519/557 atomic regions from SNP 155620 to 156220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:25,841 DEBUG Processing 169/529 atomic regions from SNP 50508 to 51108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:25,874 DEBUG Processing 573/594 atomic regions from SNP 171618 to 172218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,002 DEBUG Processing 520/557 atomic regions from SNP 155920 to 156520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,043 DEBUG Processing 170/529 atomic regions from SNP 50808 to 51408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,123 DEBUG Processing 574/594 atomic regions from SNP 171918 to 172518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,246 DEBUG Processing 521/557 atomic regions from SNP 156220 to 156820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,253 DEBUG Processing 171/529 atomic regions from SNP 51108 to 51708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,378 DEBUG Processing 575/594 atomic regions from SNP 172218 to 172818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,477 DEBUG Processing 172/529 atomic regions from SNP 51408 to 52008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,482 DEBUG Processing 522/557 atomic regions from SNP 156520 to 157120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,622 DEBUG Processing 576/594 atomic regions from SNP 172518 to 173118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,713 DEBUG Processing 173/529 atomic regions from SNP 51708 to 52308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,729 DEBUG Processing 523/557 atomic regions from SNP 156820 to 157420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:26,842 DEBUG Processing 577/594 atomic regions from SNP 172818 to 173418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:26,943 DEBUG Processing 174/529 atomic regions from SNP 52008 to 52608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:26,970 DEBUG Processing 524/557 atomic regions from SNP 157120 to 157720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,059 DEBUG Processing 578/594 atomic regions from SNP 173118 to 173718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,174 DEBUG Processing 175/529 atomic regions from SNP 52308 to 52908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,199 DEBUG Processing 525/557 atomic regions from SNP 157420 to 158020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,278 DEBUG Processing 579/594 atomic regions from SNP 173418 to 174018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,369 DEBUG Processing 176/529 atomic regions from SNP 52608 to 53208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,436 DEBUG Processing 526/557 atomic regions from SNP 157720 to 158320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,519 DEBUG Processing 580/594 atomic regions from SNP 173718 to 174318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,573 DEBUG Processing 177/529 atomic regions from SNP 52908 to 53508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,647 DEBUG Processing 527/557 atomic regions from SNP 158020 to 158620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,668 DEBUG chr18: Estimating proportion of background vs signal 2025-01-31 09:58:27,740 DEBUG Processing 581/594 atomic regions from SNP 174018 to 174618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:27,798 DEBUG Processing 178/529 atomic regions from SNP 53208 to 53808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:27,873 DEBUG Processing 528/557 atomic regions from SNP 158320 to 158920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:27,951 DEBUG Processing 582/594 atomic regions from SNP 174318 to 174918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,016 DEBUG Processing 179/529 atomic regions from SNP 53508 to 54108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,083 DEBUG Processing 529/557 atomic regions from SNP 158620 to 159220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,170 DEBUG Processing 583/594 atomic regions from SNP 174618 to 175218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,248 DEBUG Processing 180/529 atomic regions from SNP 53808 to 54408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,294 DEBUG Processing 530/557 atomic regions from SNP 158920 to 159520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,382 DEBUG Processing 584/594 atomic regions from SNP 174918 to 175518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,480 DEBUG Processing 181/529 atomic regions from SNP 54108 to 54708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,529 DEBUG Processing 531/557 atomic regions from SNP 159220 to 159820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,624 DEBUG Processing 585/594 atomic regions from SNP 175218 to 175818 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,700 DEBUG Processing 182/529 atomic regions from SNP 54408 to 55008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:28,767 DEBUG Processing 532/557 atomic regions from SNP 159520 to 160120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:28,863 DEBUG Processing 586/594 atomic regions from SNP 175518 to 176118 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:28,920 DEBUG Processing 183/529 atomic regions from SNP 54708 to 55308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,000 DEBUG Processing 533/557 atomic regions from SNP 159820 to 160420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,111 DEBUG Processing 587/594 atomic regions from SNP 175818 to 176418 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,139 DEBUG Processing 184/529 atomic regions from SNP 55008 to 55608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,228 DEBUG Processing 534/557 atomic regions from SNP 160120 to 160720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,344 DEBUG Processing 588/594 atomic regions from SNP 176118 to 176718 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,365 DEBUG Processing 185/529 atomic regions from SNP 55308 to 55908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,470 DEBUG Processing 535/557 atomic regions from SNP 160420 to 161020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,570 DEBUG Processing 589/594 atomic regions from SNP 176418 to 177018 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,588 DEBUG Processing 186/529 atomic regions from SNP 55608 to 56208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,705 DEBUG Processing 536/557 atomic regions from SNP 160720 to 161320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,778 DEBUG Processing 590/594 atomic regions from SNP 176718 to 177318 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:29,785 DEBUG Processing 187/529 atomic regions from SNP 55908 to 56508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,942 DEBUG Processing 537/557 atomic regions from SNP 161020 to 161620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:29,990 DEBUG Processing 188/529 atomic regions from SNP 56208 to 56808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:29,996 DEBUG Processing 591/594 atomic regions from SNP 177018 to 177618 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,160 DEBUG Processing 538/557 atomic regions from SNP 161320 to 161920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,191 DEBUG Processing 189/529 atomic regions from SNP 56508 to 57108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,240 DEBUG Processing 592/594 atomic regions from SNP 177318 to 177918 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,369 DEBUG Processing 539/557 atomic regions from SNP 161620 to 162220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,392 DEBUG Processing 190/529 atomic regions from SNP 56808 to 57408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,486 DEBUG Processing 593/594 atomic regions from SNP 177618 to 178218 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,571 DEBUG Processing 540/557 atomic regions from SNP 161920 to 162520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,585 DEBUG Processing 191/529 atomic regions from SNP 57108 to 57708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,699 DEBUG Processing 594/594 atomic regions from SNP 177918 to 178518 for chr15 (subchromosome 1 of 1). 2025-01-31 09:58:30,779 DEBUG Processing 541/557 atomic regions from SNP 162220 to 162820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:30,780 DEBUG Processing 192/529 atomic regions from SNP 57408 to 58008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,841 DEBUG Unique SNPs positions in subchromosome 1: 178519 2025-01-31 09:58:30,981 DEBUG Processing 193/529 atomic regions from SNP 57708 to 58308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:30,990 DEBUG Processing 542/557 atomic regions from SNP 162520 to 163120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,181 DEBUG Processing 194/529 atomic regions from SNP 58008 to 58608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,191 DEBUG Processing 543/557 atomic regions from SNP 162820 to 163420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,383 DEBUG Processing 195/529 atomic regions from SNP 58308 to 58908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,399 DEBUG Processing 544/557 atomic regions from SNP 163120 to 163720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,586 DEBUG Processing 196/529 atomic regions from SNP 58608 to 59208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,612 DEBUG Processing 545/557 atomic regions from SNP 163420 to 164020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:31,797 DEBUG Processing 197/529 atomic regions from SNP 58908 to 59508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:31,853 DEBUG Processing 546/557 atomic regions from SNP 163720 to 164320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,001 DEBUG Processing 198/529 atomic regions from SNP 59208 to 59808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,095 DEBUG Processing 547/557 atomic regions from SNP 164020 to 164620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,202 DEBUG Processing 199/529 atomic regions from SNP 59508 to 60108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,308 DEBUG Processing 548/557 atomic regions from SNP 164320 to 164920 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,398 DEBUG Processing 200/529 atomic regions from SNP 59808 to 60408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,511 DEBUG Processing 549/557 atomic regions from SNP 164620 to 165220 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,603 DEBUG Processing 201/529 atomic regions from SNP 60108 to 60708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,720 DEBUG Processing 550/557 atomic regions from SNP 164920 to 165520 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:32,806 DEBUG Processing 202/529 atomic regions from SNP 60408 to 61008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:32,941 DEBUG Processing 551/557 atomic regions from SNP 165220 to 165820 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,008 DEBUG Processing 203/529 atomic regions from SNP 60708 to 61308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,158 DEBUG Processing 552/557 atomic regions from SNP 165520 to 166120 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,208 DEBUG Processing 204/529 atomic regions from SNP 61008 to 61608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,369 DEBUG Processing 553/557 atomic regions from SNP 165820 to 166420 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,436 DEBUG Processing 205/529 atomic regions from SNP 61308 to 61908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,597 DEBUG Processing 554/557 atomic regions from SNP 166120 to 166720 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,641 DEBUG Processing 206/529 atomic regions from SNP 61608 to 62208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:33,822 DEBUG Processing 555/557 atomic regions from SNP 166420 to 167020 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:33,839 DEBUG Processing 207/529 atomic regions from SNP 61908 to 62508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,053 DEBUG Processing 556/557 atomic regions from SNP 166720 to 167320 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,064 DEBUG Processing 208/529 atomic regions from SNP 62208 to 62808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,273 DEBUG Processing 209/529 atomic regions from SNP 62508 to 63108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,283 DEBUG Processing 557/557 atomic regions from SNP 167020 to 167620 for chr16 (subchromosome 1 of 1). 2025-01-31 09:58:34,446 DEBUG Unique SNPs positions in subchromosome 1: 167621 2025-01-31 09:58:34,475 DEBUG Processing 210/529 atomic regions from SNP 62808 to 63408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,673 DEBUG Processing 211/529 atomic regions from SNP 63108 to 63708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:34,873 DEBUG Processing 212/529 atomic regions from SNP 63408 to 64008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,077 DEBUG Processing 213/529 atomic regions from SNP 63708 to 64308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,275 DEBUG Processing 214/529 atomic regions from SNP 64008 to 64608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,471 DEBUG Processing 215/529 atomic regions from SNP 64308 to 64908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,664 DEBUG Processing 216/529 atomic regions from SNP 64608 to 65208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:35,858 DEBUG Processing 217/529 atomic regions from SNP 64908 to 65508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,067 DEBUG Processing 218/529 atomic regions from SNP 65208 to 65808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,271 DEBUG Processing 219/529 atomic regions from SNP 65508 to 66108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,481 DEBUG Processing 220/529 atomic regions from SNP 65808 to 66408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,688 DEBUG Processing 221/529 atomic regions from SNP 66108 to 66708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:36,896 DEBUG Processing 222/529 atomic regions from SNP 66408 to 67008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,096 DEBUG Processing 223/529 atomic regions from SNP 66708 to 67308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,299 DEBUG Processing 224/529 atomic regions from SNP 67008 to 67608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,429 DEBUG chr19: Estimating proportion of background vs signal 2025-01-31 09:58:37,520 DEBUG Processing 225/529 atomic regions from SNP 67308 to 67908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,667 DEBUG chr18:0-90702639: Signal thresholds approximated 2025-01-31 09:58:37,668 DEBUG chr18: Signal quantile: 0.993. signal threshold: 13. Best RMSEA: 0.020 2025-01-31 09:58:37,734 DEBUG Processing 226/529 atomic regions from SNP 67608 to 68208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:37,953 DEBUG Processing 227/529 atomic regions from SNP 67908 to 68508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,165 DEBUG Processing 228/529 atomic regions from SNP 68208 to 68808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,377 DEBUG Processing 229/529 atomic regions from SNP 68508 to 69108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,586 DEBUG Processing 230/529 atomic regions from SNP 68808 to 69408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:38,792 DEBUG Processing 231/529 atomic regions from SNP 69108 to 69708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,002 DEBUG Processing 232/529 atomic regions from SNP 69408 to 70008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,222 DEBUG Processing 233/529 atomic regions from SNP 69708 to 70308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,292 DEBUG chr18 total SNP count: 155306 2025-01-31 09:58:39,293 DEBUG chr18 length: 90702639 2025-01-31 09:58:39,293 DEBUG ----------------------------------------- 2025-01-31 09:58:39,293 INFO Processing SNPs in chr18 2025-01-31 09:58:39,431 DEBUG Processing 234/529 atomic regions from SNP 70008 to 70608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,453 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 155306)] 2025-01-31 09:58:39,563 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:39,645 DEBUG Processing 235/529 atomic regions from SNP 70308 to 70908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:39,858 DEBUG Processing 236/529 atomic regions from SNP 70608 to 71208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,071 DEBUG Processing 237/529 atomic regions from SNP 70908 to 71508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,309 DEBUG Processing 238/529 atomic regions from SNP 71208 to 71808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,562 DEBUG Processing 239/529 atomic regions from SNP 71508 to 72108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:40,788 DEBUG Processing 240/529 atomic regions from SNP 71808 to 72408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,014 DEBUG Processing 241/529 atomic regions from SNP 72108 to 72708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,254 DEBUG Processing 242/529 atomic regions from SNP 72408 to 73008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,496 DEBUG Processing 243/529 atomic regions from SNP 72708 to 73308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,717 DEBUG Processing 244/529 atomic regions from SNP 73008 to 73608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:41,949 DEBUG Processing 245/529 atomic regions from SNP 73308 to 73908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,109 DEBUG Subchromosome time: 148.26397984998766, subchromosome SNPs: 167621 2025-01-31 09:58:42,110 DEBUG Estimated BADs: [6.02, 1.00, 4.01, 2.01, 8.03, 0.67, 4.01, 0.67, 4.01, 0.67, 2.01, 0.67, 2.01, 0.50, 10.04, 2.01, 0.40, 1.00, 8.03, 4.01] SNP counts: [3710, 4795, 11830, 4426, 3631, 890, 6968, 10195, 18364, 7508, 2697, 8371, 2166, 7998, 451, 6508, 6902, 44514, 8917, 6780] SNP IDs counts: [3710, 4795, 11830, 4426, 3631, 890, 6968, 10195, 18364, 7508, 2697, 8371, 2166, 7998, 451, 6508, 6902, 44514, 8917, 6780] Critical gap: 532824bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.10Mbp], 5.43Mbp, 8.05Mbp, 14.48Mbp, 17.11Mbp, 19.04Mbp, 19.65Mbp, 23.49Mbp, 29.21Mbp, 39.07Mbp, 43.32Mbp, 44.76Mbp, 49.76Mbp, 50.92Mbp, 55.82Mbp, 56.08Mbp, 59.86Mbp, 64.14Mbp, 89.76Mbp, 94.47Mbp, 98.21Mbp] 2025-01-31 09:58:42,110 DEBUG chr16 time: 148.26448269793764 s 2025-01-31 09:58:42,193 DEBUG Processing 246/529 atomic regions from SNP 73608 to 74208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,202 DEBUG chr16: Fitting background model for 20 segments 2025-01-31 09:58:42,424 DEBUG Processing 247/529 atomic regions from SNP 73908 to 74508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,624 DEBUG Processing 248/529 atomic regions from SNP 74208 to 74808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:42,830 DEBUG Processing 249/529 atomic regions from SNP 74508 to 75108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,057 DEBUG Processing 250/529 atomic regions from SNP 74808 to 75408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,300 DEBUG Processing 251/529 atomic regions from SNP 75108 to 75708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,543 DEBUG Processing 252/529 atomic regions from SNP 75408 to 76008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:43,784 DEBUG Processing 253/529 atomic regions from SNP 75708 to 76308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,016 DEBUG Processing 254/529 atomic regions from SNP 76008 to 76608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,018 DEBUG Subchromosome time: 167.83604925894178, subchromosome SNPs: 178519 2025-01-31 09:58:44,018 DEBUG Estimated BADs: [2.48, 7.45, 9.93, 2.48, 0.28, 1.24, 0.41, 2.48, 0.62, 2.48, 1.24, 0.28, 0.83, 4.97, 1.24, 0.28, 1.24, 2.48, 9.93, 4.97, 2.48, 7.45, 1.24, 2.48, 7.45, 1.24] SNP counts: [3401, 5318, 9705, 16845, 3227, 5706, 4502, 1213, 3559, 9359, 10167, 8403, 13522, 3879, 15924, 3884, 2819, 5130, 12242, 6346, 5637, 1724, 11808, 4181, 9196, 822] SNP IDs counts: [3401, 5318, 9705, 16845, 3227, 5706, 4502, 1213, 3559, 9359, 10167, 8403, 13522, 3879, 15924, 3884, 2819, 5130, 12242, 6346, 5637, 1724, 11808, 4181, 9196, 822] Critical gap: 548329bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.05Mbp], 5.10Mbp, 8.09Mbp, 13.46Mbp, 23.16Mbp, 25.19Mbp, 28.32Mbp, 31.00Mbp, 31.67Mbp, 33.78Mbp, 39.12Mbp, 44.88Mbp, 50.14Mbp, 57.89Mbp, 59.95Mbp, 69.16Mbp, 71.50Mbp, 73.04Mbp, 75.85Mbp, 82.39Mbp, 85.81Mbp, 88.81Mbp, 89.75Mbp, 96.24Mbp, 98.50Mbp, 103.37Mbp, 104.04Mbp] 2025-01-31 09:58:44,018 DEBUG chr15 time: 167.83659451792482 s 2025-01-31 09:58:44,128 DEBUG chr15: Fitting background model for 26 segments 2025-01-31 09:58:44,221 DEBUG Processing 255/529 atomic regions from SNP 76308 to 76908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,462 DEBUG Processing 256/529 atomic regions from SNP 76608 to 77208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,675 DEBUG Processing 257/529 atomic regions from SNP 76908 to 77508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:44,882 DEBUG Processing 258/529 atomic regions from SNP 77208 to 77808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,088 DEBUG Processing 259/529 atomic regions from SNP 77508 to 78108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,292 DEBUG Processing 260/529 atomic regions from SNP 77808 to 78408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,494 DEBUG Processing 261/529 atomic regions from SNP 78108 to 78708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,699 DEBUG Processing 262/529 atomic regions from SNP 78408 to 79008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:45,907 DEBUG Processing 263/529 atomic regions from SNP 78708 to 79308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,115 DEBUG Processing 264/529 atomic regions from SNP 79008 to 79608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,327 DEBUG Processing 265/529 atomic regions from SNP 79308 to 79908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,534 DEBUG Processing 266/529 atomic regions from SNP 79608 to 80208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,734 DEBUG Processing 267/529 atomic regions from SNP 79908 to 80508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:46,946 DEBUG Processing 268/529 atomic regions from SNP 80208 to 80808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,151 DEBUG Processing 269/529 atomic regions from SNP 80508 to 81108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,349 DEBUG Processing 270/529 atomic regions from SNP 80808 to 81408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,354 DEBUG chr19:0-61431566: Signal thresholds approximated 2025-01-31 09:58:47,355 DEBUG chr19: Signal quantile: 0.986. signal threshold: 14. Best RMSEA: 0.012 2025-01-31 09:58:47,556 DEBUG Processing 271/529 atomic regions from SNP 81108 to 81708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,767 DEBUG Processing 272/529 atomic regions from SNP 81408 to 82008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:47,975 DEBUG Processing 273/529 atomic regions from SNP 81708 to 82308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,181 DEBUG Processing 274/529 atomic regions from SNP 82008 to 82608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,382 DEBUG Processing 275/529 atomic regions from SNP 82308 to 82908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,492 DEBUG chr19 total SNP count: 104165 2025-01-31 09:58:48,492 DEBUG chr19 length: 61431566 2025-01-31 09:58:48,492 DEBUG ----------------------------------------- 2025-01-31 09:58:48,492 INFO Processing SNPs in chr19 2025-01-31 09:58:48,592 DEBUG Processing 276/529 atomic regions from SNP 82608 to 83208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:48,608 DEBUG Stage 1 subchromosomes (start SNP index, end SNP index): [(0, 104165)] 2025-01-31 09:58:48,684 DEBUG Constructing initial SNP-wise likelihoods... 2025-01-31 09:58:48,810 DEBUG Processing 277/529 atomic regions from SNP 82908 to 83508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,019 DEBUG Processing 278/529 atomic regions from SNP 83208 to 83808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,223 DEBUG Processing 279/529 atomic regions from SNP 83508 to 84108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,425 DEBUG Processing 280/529 atomic regions from SNP 83808 to 84408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,629 DEBUG Processing 281/529 atomic regions from SNP 84108 to 84708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:49,835 DEBUG Processing 282/529 atomic regions from SNP 84408 to 85008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,042 DEBUG Processing 283/529 atomic regions from SNP 84708 to 85308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,251 DEBUG Processing 284/529 atomic regions from SNP 85008 to 85608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,452 DEBUG Processing 285/529 atomic regions from SNP 85308 to 85908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,650 DEBUG Processing 286/529 atomic regions from SNP 85608 to 86208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:50,850 DEBUG Processing 287/529 atomic regions from SNP 85908 to 86508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,055 DEBUG Processing 288/529 atomic regions from SNP 86208 to 86808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,268 DEBUG Processing 289/529 atomic regions from SNP 86508 to 87108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,479 DEBUG Processing 290/529 atomic regions from SNP 86808 to 87408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,682 DEBUG Processing 291/529 atomic regions from SNP 87108 to 87708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:51,892 DEBUG Processing 292/529 atomic regions from SNP 87408 to 88008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,096 DEBUG Processing 293/529 atomic regions from SNP 87708 to 88308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,298 DEBUG Processing 294/529 atomic regions from SNP 88008 to 88608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,497 DEBUG Processing 295/529 atomic regions from SNP 88308 to 88908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,705 DEBUG Processing 296/529 atomic regions from SNP 88608 to 89208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:52,913 DEBUG Processing 297/529 atomic regions from SNP 88908 to 89508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,118 DEBUG Processing 298/529 atomic regions from SNP 89208 to 89808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,322 DEBUG Processing 299/529 atomic regions from SNP 89508 to 90108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,552 DEBUG Processing 300/529 atomic regions from SNP 89808 to 90408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:53,793 DEBUG Processing 301/529 atomic regions from SNP 90108 to 90708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,032 DEBUG Processing 302/529 atomic regions from SNP 90408 to 91008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,261 DEBUG Processing 303/529 atomic regions from SNP 90708 to 91308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,494 DEBUG Processing 304/529 atomic regions from SNP 91008 to 91608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,728 DEBUG Processing 305/529 atomic regions from SNP 91308 to 91908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:54,962 DEBUG Processing 306/529 atomic regions from SNP 91608 to 92208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,196 DEBUG Processing 307/529 atomic regions from SNP 91908 to 92508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,426 DEBUG Processing 308/529 atomic regions from SNP 92208 to 92808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,637 DEBUG Processing 309/529 atomic regions from SNP 92508 to 93108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:55,824 DEBUG Processing 310/529 atomic regions from SNP 92808 to 93408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,037 DEBUG Processing 311/529 atomic regions from SNP 93108 to 93708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,249 DEBUG Processing 312/529 atomic regions from SNP 93408 to 94008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,460 DEBUG Processing 313/529 atomic regions from SNP 93708 to 94308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,670 DEBUG Processing 314/529 atomic regions from SNP 94008 to 94608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:56,882 DEBUG Processing 315/529 atomic regions from SNP 94308 to 94908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,094 DEBUG Processing 316/529 atomic regions from SNP 94608 to 95208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,302 DEBUG Processing 317/529 atomic regions from SNP 94908 to 95508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,511 DEBUG Processing 318/529 atomic regions from SNP 95208 to 95808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,721 DEBUG Processing 319/529 atomic regions from SNP 95508 to 96108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:57,924 DEBUG Processing 320/529 atomic regions from SNP 95808 to 96408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,131 DEBUG Processing 321/529 atomic regions from SNP 96108 to 96708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,336 DEBUG Processing 322/529 atomic regions from SNP 96408 to 97008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,541 DEBUG Processing 323/529 atomic regions from SNP 96708 to 97308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,743 DEBUG Processing 324/529 atomic regions from SNP 97008 to 97608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:58,762 DEBUG Segmenting atomic regions: 2025-01-31 09:58:58,832 DEBUG Processing 1/516 atomic regions from SNP 0 to 601 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:58,949 DEBUG Processing 325/529 atomic regions from SNP 97308 to 97908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,029 DEBUG Processing 2/516 atomic regions from SNP 301 to 902 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,150 DEBUG Processing 326/529 atomic regions from SNP 97608 to 98208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,250 DEBUG Processing 3/516 atomic regions from SNP 602 to 1203 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,364 DEBUG Processing 327/529 atomic regions from SNP 97908 to 98508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,473 DEBUG Processing 4/516 atomic regions from SNP 903 to 1504 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,580 DEBUG Processing 328/529 atomic regions from SNP 98208 to 98808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,674 DEBUG Processing 5/516 atomic regions from SNP 1204 to 1805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,773 DEBUG Processing 329/529 atomic regions from SNP 98508 to 99108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:58:59,873 DEBUG Processing 6/516 atomic regions from SNP 1505 to 2106 for chr18 (subchromosome 1 of 1). 2025-01-31 09:58:59,977 DEBUG Processing 330/529 atomic regions from SNP 98808 to 99408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,078 DEBUG Processing 7/516 atomic regions from SNP 1806 to 2407 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,178 DEBUG Processing 331/529 atomic regions from SNP 99108 to 99708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,281 DEBUG Processing 8/516 atomic regions from SNP 2107 to 2708 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,383 DEBUG Processing 332/529 atomic regions from SNP 99408 to 100008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,483 DEBUG Processing 9/516 atomic regions from SNP 2408 to 3009 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,585 DEBUG Processing 333/529 atomic regions from SNP 99708 to 100308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,688 DEBUG Processing 10/516 atomic regions from SNP 2709 to 3310 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,790 DEBUG Processing 334/529 atomic regions from SNP 100008 to 100608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:00,892 DEBUG Processing 11/516 atomic regions from SNP 3010 to 3611 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:00,990 DEBUG Processing 335/529 atomic regions from SNP 100308 to 100908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,111 DEBUG Processing 12/516 atomic regions from SNP 3311 to 3912 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,187 DEBUG Processing 336/529 atomic regions from SNP 100608 to 101208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,307 DEBUG Processing 13/516 atomic regions from SNP 3612 to 4213 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,389 DEBUG Processing 337/529 atomic regions from SNP 100908 to 101508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,529 DEBUG Processing 14/516 atomic regions from SNP 3913 to 4514 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,593 DEBUG Processing 338/529 atomic regions from SNP 101208 to 101808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,737 DEBUG Processing 15/516 atomic regions from SNP 4214 to 4815 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,792 DEBUG Processing 339/529 atomic regions from SNP 101508 to 102108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:01,881 DEBUG Segmenting atomic regions: 2025-01-31 09:59:01,933 DEBUG Processing 1/346 atomic regions from SNP 0 to 601 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:01,942 DEBUG Processing 16/516 atomic regions from SNP 4515 to 5116 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:01,994 DEBUG Processing 340/529 atomic regions from SNP 101808 to 102408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,139 DEBUG Processing 2/346 atomic regions from SNP 301 to 902 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,156 DEBUG Processing 17/516 atomic regions from SNP 4816 to 5417 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,195 DEBUG Processing 341/529 atomic regions from SNP 102108 to 102708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,327 DEBUG Processing 3/346 atomic regions from SNP 602 to 1203 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,364 DEBUG Processing 18/516 atomic regions from SNP 5117 to 5718 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,397 DEBUG Processing 342/529 atomic regions from SNP 102408 to 103008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,520 DEBUG Processing 4/346 atomic regions from SNP 903 to 1504 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,590 DEBUG Processing 19/516 atomic regions from SNP 5418 to 6019 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,603 DEBUG Processing 343/529 atomic regions from SNP 102708 to 103308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,716 DEBUG Processing 5/346 atomic regions from SNP 1204 to 1805 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:02,794 DEBUG Processing 20/516 atomic regions from SNP 5719 to 6320 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:02,809 DEBUG Processing 344/529 atomic regions from SNP 103008 to 103608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:02,924 DEBUG Processing 6/346 atomic regions from SNP 1505 to 2106 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,017 DEBUG Processing 345/529 atomic regions from SNP 103308 to 103908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,018 DEBUG Processing 21/516 atomic regions from SNP 6020 to 6621 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,128 DEBUG Processing 7/346 atomic regions from SNP 1806 to 2407 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,221 DEBUG Processing 22/516 atomic regions from SNP 6321 to 6922 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,229 DEBUG Processing 346/529 atomic regions from SNP 103608 to 104208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,324 DEBUG Processing 8/346 atomic regions from SNP 2107 to 2708 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,429 DEBUG Processing 23/516 atomic regions from SNP 6622 to 7223 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,441 DEBUG Processing 347/529 atomic regions from SNP 103908 to 104508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,502 DEBUG Processing 9/346 atomic regions from SNP 2408 to 3009 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,634 DEBUG Processing 24/516 atomic regions from SNP 6923 to 7524 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,652 DEBUG Processing 348/529 atomic regions from SNP 104208 to 104808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,693 DEBUG Processing 10/346 atomic regions from SNP 2709 to 3310 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:03,840 DEBUG Processing 25/516 atomic regions from SNP 7224 to 7825 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:03,867 DEBUG Processing 349/529 atomic regions from SNP 104508 to 105108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:03,890 DEBUG Processing 11/346 atomic regions from SNP 3010 to 3611 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,038 DEBUG Processing 26/516 atomic regions from SNP 7525 to 8126 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,081 DEBUG Processing 350/529 atomic regions from SNP 104808 to 105408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,088 DEBUG Processing 12/346 atomic regions from SNP 3311 to 3912 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,241 DEBUG Processing 27/516 atomic regions from SNP 7826 to 8427 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,290 DEBUG Processing 351/529 atomic regions from SNP 105108 to 105708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,298 DEBUG Processing 13/346 atomic regions from SNP 3612 to 4213 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,442 DEBUG Processing 28/516 atomic regions from SNP 8127 to 8728 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,494 DEBUG Processing 14/346 atomic regions from SNP 3913 to 4514 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,502 DEBUG Processing 352/529 atomic regions from SNP 105408 to 106008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,646 DEBUG Processing 29/516 atomic regions from SNP 8428 to 9029 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,701 DEBUG Processing 15/346 atomic regions from SNP 4214 to 4815 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,710 DEBUG Processing 353/529 atomic regions from SNP 105708 to 106308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:04,847 DEBUG Processing 30/516 atomic regions from SNP 8729 to 9330 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:04,910 DEBUG Processing 16/346 atomic regions from SNP 4515 to 5116 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:04,923 DEBUG Processing 354/529 atomic regions from SNP 106008 to 106608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,063 DEBUG Processing 31/516 atomic regions from SNP 9030 to 9631 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,128 DEBUG Processing 17/346 atomic regions from SNP 4816 to 5417 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,138 DEBUG Processing 355/529 atomic regions from SNP 106308 to 106908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,257 DEBUG Processing 32/516 atomic regions from SNP 9331 to 9932 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,342 DEBUG Processing 18/346 atomic regions from SNP 5117 to 5718 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,352 DEBUG Processing 356/529 atomic regions from SNP 106608 to 107208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,454 DEBUG Processing 33/516 atomic regions from SNP 9632 to 10233 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,554 DEBUG Processing 19/346 atomic regions from SNP 5418 to 6019 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,567 DEBUG Processing 357/529 atomic regions from SNP 106908 to 107508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,653 DEBUG Processing 34/516 atomic regions from SNP 9933 to 10534 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,765 DEBUG Processing 20/346 atomic regions from SNP 5719 to 6320 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:05,795 DEBUG Processing 358/529 atomic regions from SNP 107208 to 107808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:05,852 DEBUG Processing 35/516 atomic regions from SNP 10234 to 10835 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:05,975 DEBUG Processing 21/346 atomic regions from SNP 6020 to 6621 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,029 DEBUG Processing 359/529 atomic regions from SNP 107508 to 108108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,049 DEBUG Processing 36/516 atomic regions from SNP 10535 to 11136 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,172 DEBUG Processing 22/346 atomic regions from SNP 6321 to 6922 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,270 DEBUG Processing 360/529 atomic regions from SNP 107808 to 108408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,275 DEBUG Processing 37/516 atomic regions from SNP 10836 to 11437 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,359 DEBUG Processing 23/346 atomic regions from SNP 6622 to 7223 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,471 DEBUG Processing 38/516 atomic regions from SNP 11137 to 11738 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,481 DEBUG Processing 361/529 atomic regions from SNP 108108 to 108708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,564 DEBUG Processing 24/346 atomic regions from SNP 6923 to 7524 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,665 DEBUG Processing 39/516 atomic regions from SNP 11438 to 12039 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,692 DEBUG Processing 362/529 atomic regions from SNP 108408 to 109008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,771 DEBUG Processing 25/346 atomic regions from SNP 7224 to 7825 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:06,860 DEBUG Processing 40/516 atomic regions from SNP 11739 to 12340 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:06,901 DEBUG Processing 363/529 atomic regions from SNP 108708 to 109308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:06,976 DEBUG Processing 26/346 atomic regions from SNP 7525 to 8126 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,073 DEBUG Processing 41/516 atomic regions from SNP 12040 to 12641 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,117 DEBUG Processing 364/529 atomic regions from SNP 109008 to 109608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,174 DEBUG Processing 27/346 atomic regions from SNP 7826 to 8427 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,277 DEBUG Processing 42/516 atomic regions from SNP 12341 to 12942 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,328 DEBUG Processing 365/529 atomic regions from SNP 109308 to 109908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,360 DEBUG Processing 28/346 atomic regions from SNP 8127 to 8728 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,485 DEBUG Processing 43/516 atomic regions from SNP 12642 to 13243 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,539 DEBUG Processing 29/346 atomic regions from SNP 8428 to 9029 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,539 DEBUG Processing 366/529 atomic regions from SNP 109608 to 110208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,727 DEBUG Processing 30/346 atomic regions from SNP 8729 to 9330 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,736 DEBUG Processing 44/516 atomic regions from SNP 12943 to 13544 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,752 DEBUG Processing 367/529 atomic regions from SNP 109908 to 110508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:07,905 DEBUG Processing 31/346 atomic regions from SNP 9030 to 9631 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:07,946 DEBUG Processing 45/516 atomic regions from SNP 13244 to 13845 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:07,968 DEBUG Processing 368/529 atomic regions from SNP 110208 to 110808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,088 DEBUG Processing 32/346 atomic regions from SNP 9331 to 9932 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,150 DEBUG Processing 46/516 atomic regions from SNP 13545 to 14146 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,181 DEBUG Processing 369/529 atomic regions from SNP 110508 to 111108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,289 DEBUG Processing 33/346 atomic regions from SNP 9632 to 10233 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,353 DEBUG Processing 47/516 atomic regions from SNP 13846 to 14447 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,392 DEBUG Processing 370/529 atomic regions from SNP 110808 to 111408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,513 DEBUG Processing 34/346 atomic regions from SNP 9933 to 10534 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,561 DEBUG Processing 48/516 atomic regions from SNP 14147 to 14748 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,605 DEBUG Processing 371/529 atomic regions from SNP 111108 to 111708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,732 DEBUG Processing 35/346 atomic regions from SNP 10234 to 10835 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,765 DEBUG Processing 49/516 atomic regions from SNP 14448 to 15049 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:08,820 DEBUG Processing 372/529 atomic regions from SNP 111408 to 112008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:08,925 DEBUG Processing 36/346 atomic regions from SNP 10535 to 11136 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:08,974 DEBUG Processing 50/516 atomic regions from SNP 14749 to 15350 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,033 DEBUG Processing 373/529 atomic regions from SNP 111708 to 112308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,106 DEBUG Processing 37/346 atomic regions from SNP 10836 to 11437 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,182 DEBUG Processing 51/516 atomic regions from SNP 15050 to 15651 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,246 DEBUG Processing 374/529 atomic regions from SNP 112008 to 112608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,284 DEBUG Processing 38/346 atomic regions from SNP 11137 to 11738 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,388 DEBUG Processing 52/516 atomic regions from SNP 15351 to 15952 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,460 DEBUG Processing 375/529 atomic regions from SNP 112308 to 112908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,486 DEBUG Processing 39/346 atomic regions from SNP 11438 to 12039 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,600 DEBUG Processing 53/516 atomic regions from SNP 15652 to 16253 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,676 DEBUG Processing 376/529 atomic regions from SNP 112608 to 113208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,693 DEBUG Processing 40/346 atomic regions from SNP 11739 to 12340 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:09,818 DEBUG Processing 54/516 atomic regions from SNP 15953 to 16554 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:09,889 DEBUG Processing 377/529 atomic regions from SNP 112908 to 113508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:09,904 DEBUG Processing 41/346 atomic regions from SNP 12040 to 12641 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,024 DEBUG Processing 55/516 atomic regions from SNP 16254 to 16855 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,103 DEBUG Processing 42/346 atomic regions from SNP 12341 to 12942 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,103 DEBUG Processing 378/529 atomic regions from SNP 113208 to 113808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,230 DEBUG Processing 56/516 atomic regions from SNP 16555 to 17156 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,301 DEBUG Processing 43/346 atomic regions from SNP 12642 to 13243 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,317 DEBUG Processing 379/529 atomic regions from SNP 113508 to 114108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,440 DEBUG Processing 57/516 atomic regions from SNP 16856 to 17457 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,497 DEBUG Processing 44/346 atomic regions from SNP 12943 to 13544 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,521 DEBUG Processing 380/529 atomic regions from SNP 113808 to 114408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,653 DEBUG Processing 58/516 atomic regions from SNP 17157 to 17758 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,697 DEBUG Processing 45/346 atomic regions from SNP 13244 to 13845 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,724 DEBUG Processing 381/529 atomic regions from SNP 114108 to 114708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:10,866 DEBUG Processing 59/516 atomic regions from SNP 17458 to 18059 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:10,895 DEBUG Processing 46/346 atomic regions from SNP 13545 to 14146 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:10,934 DEBUG Processing 382/529 atomic regions from SNP 114408 to 115008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,078 DEBUG Processing 60/516 atomic regions from SNP 17759 to 18360 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,078 DEBUG Processing 47/346 atomic regions from SNP 13846 to 14447 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,148 DEBUG Processing 383/529 atomic regions from SNP 114708 to 115308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,264 DEBUG Processing 48/346 atomic regions from SNP 14147 to 14748 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,288 DEBUG Processing 61/516 atomic regions from SNP 18060 to 18661 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,358 DEBUG Processing 384/529 atomic regions from SNP 115008 to 115608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,444 DEBUG Processing 49/346 atomic regions from SNP 14448 to 15049 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,498 DEBUG Processing 62/516 atomic regions from SNP 18361 to 18962 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,569 DEBUG Processing 385/529 atomic regions from SNP 115308 to 115908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,612 DEBUG Processing 50/346 atomic regions from SNP 14749 to 15350 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,707 DEBUG Processing 63/516 atomic regions from SNP 18662 to 19263 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,781 DEBUG Processing 386/529 atomic regions from SNP 115608 to 116208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:11,805 DEBUG Processing 51/346 atomic regions from SNP 15050 to 15651 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:11,911 DEBUG Processing 64/516 atomic regions from SNP 18963 to 19564 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:11,989 DEBUG Processing 387/529 atomic regions from SNP 115908 to 116508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,009 DEBUG Processing 52/346 atomic regions from SNP 15351 to 15952 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,115 DEBUG Processing 65/516 atomic regions from SNP 19264 to 19865 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,190 DEBUG Processing 53/346 atomic regions from SNP 15652 to 16253 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,201 DEBUG Processing 388/529 atomic regions from SNP 116208 to 116808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,320 DEBUG Processing 66/516 atomic regions from SNP 19565 to 20166 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,377 DEBUG Processing 54/346 atomic regions from SNP 15953 to 16554 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,429 DEBUG Processing 389/529 atomic regions from SNP 116508 to 117108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,517 DEBUG Processing 67/516 atomic regions from SNP 19866 to 20467 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,561 DEBUG Processing 55/346 atomic regions from SNP 16254 to 16855 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,664 DEBUG Processing 390/529 atomic regions from SNP 116808 to 117408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,719 DEBUG Processing 68/516 atomic regions from SNP 20167 to 20768 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:12,740 DEBUG Processing 56/346 atomic regions from SNP 16555 to 17156 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,899 DEBUG Processing 391/529 atomic regions from SNP 117108 to 117708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:12,917 DEBUG Processing 57/346 atomic regions from SNP 16856 to 17457 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:12,922 DEBUG Processing 69/516 atomic regions from SNP 20468 to 21069 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,099 DEBUG Processing 58/346 atomic regions from SNP 17157 to 17758 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,110 DEBUG Processing 392/529 atomic regions from SNP 117408 to 118008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,125 DEBUG Processing 70/516 atomic regions from SNP 20769 to 21370 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,281 DEBUG Processing 59/346 atomic regions from SNP 17458 to 18059 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,333 DEBUG Processing 71/516 atomic regions from SNP 21070 to 21671 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,343 DEBUG Processing 393/529 atomic regions from SNP 117708 to 118308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,463 DEBUG Processing 60/346 atomic regions from SNP 17759 to 18360 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,536 DEBUG Processing 72/516 atomic regions from SNP 21371 to 21972 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,556 DEBUG Processing 394/529 atomic regions from SNP 118008 to 118608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,649 DEBUG Processing 61/346 atomic regions from SNP 18060 to 18661 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,740 DEBUG Processing 73/516 atomic regions from SNP 21672 to 22273 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,763 DEBUG Processing 395/529 atomic regions from SNP 118308 to 118908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:13,826 DEBUG Processing 62/346 atomic regions from SNP 18361 to 18962 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:13,946 DEBUG Processing 74/516 atomic regions from SNP 21973 to 22574 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:13,968 DEBUG Processing 396/529 atomic regions from SNP 118608 to 119208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,007 DEBUG Processing 63/346 atomic regions from SNP 18662 to 19263 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,154 DEBUG Processing 75/516 atomic regions from SNP 22274 to 22875 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,177 DEBUG Processing 397/529 atomic regions from SNP 118908 to 119508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,185 DEBUG Processing 64/346 atomic regions from SNP 18963 to 19564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,363 DEBUG Processing 76/516 atomic regions from SNP 22575 to 23176 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,369 DEBUG Processing 65/346 atomic regions from SNP 19264 to 19864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,386 DEBUG Processing 398/529 atomic regions from SNP 119208 to 119808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,559 DEBUG Processing 66/346 atomic regions from SNP 19564 to 20164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,576 DEBUG Processing 77/516 atomic regions from SNP 22876 to 23477 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,597 DEBUG Processing 399/529 atomic regions from SNP 119508 to 120108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,744 DEBUG Processing 67/346 atomic regions from SNP 19864 to 20464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,784 DEBUG Processing 78/516 atomic regions from SNP 23177 to 23778 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:14,807 DEBUG Processing 400/529 atomic regions from SNP 119808 to 120408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:14,918 DEBUG Processing 68/346 atomic regions from SNP 20164 to 20764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:14,987 DEBUG Processing 79/516 atomic regions from SNP 23478 to 24079 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,015 DEBUG Processing 401/529 atomic regions from SNP 120108 to 120708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,090 DEBUG Processing 69/346 atomic regions from SNP 20464 to 21064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,213 DEBUG Processing 80/516 atomic regions from SNP 23779 to 24380 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,233 DEBUG Processing 402/529 atomic regions from SNP 120408 to 121008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,270 DEBUG Processing 70/346 atomic regions from SNP 20764 to 21364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,428 DEBUG Processing 81/516 atomic regions from SNP 24080 to 24681 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,446 DEBUG Processing 403/529 atomic regions from SNP 120708 to 121308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,454 DEBUG Processing 71/346 atomic regions from SNP 21064 to 21664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,641 DEBUG Processing 72/346 atomic regions from SNP 21364 to 21964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,642 DEBUG Processing 82/516 atomic regions from SNP 24381 to 24982 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,648 DEBUG Processing 404/529 atomic regions from SNP 121008 to 121608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,819 DEBUG Processing 73/346 atomic regions from SNP 21664 to 22264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:15,840 DEBUG Processing 405/529 atomic regions from SNP 121308 to 121908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:15,842 DEBUG Processing 83/516 atomic regions from SNP 24682 to 25283 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:15,986 DEBUG Processing 74/346 atomic regions from SNP 21964 to 22564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,039 DEBUG Processing 406/529 atomic regions from SNP 121608 to 122208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,045 DEBUG Processing 84/516 atomic regions from SNP 24983 to 25584 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,161 DEBUG Processing 75/346 atomic regions from SNP 22264 to 22864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,230 DEBUG Processing 407/529 atomic regions from SNP 121908 to 122508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,240 DEBUG Processing 85/516 atomic regions from SNP 25284 to 25885 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,333 DEBUG Processing 76/346 atomic regions from SNP 22564 to 23164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,420 DEBUG Processing 408/529 atomic regions from SNP 122208 to 122808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,436 DEBUG Processing 86/516 atomic regions from SNP 25585 to 26186 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,521 DEBUG Processing 77/346 atomic regions from SNP 22864 to 23464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,615 DEBUG Processing 409/529 atomic regions from SNP 122508 to 123108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,625 DEBUG Processing 87/516 atomic regions from SNP 25886 to 26487 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,699 DEBUG Processing 78/346 atomic regions from SNP 23164 to 23764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:16,811 DEBUG Processing 410/529 atomic regions from SNP 122808 to 123408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:16,819 DEBUG Processing 88/516 atomic regions from SNP 26187 to 26788 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:16,873 DEBUG Processing 79/346 atomic regions from SNP 23464 to 24064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,000 DEBUG Processing 411/529 atomic regions from SNP 123108 to 123708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,012 DEBUG Processing 89/516 atomic regions from SNP 26488 to 27089 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,047 DEBUG Processing 80/346 atomic regions from SNP 23764 to 24364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,195 DEBUG Processing 412/529 atomic regions from SNP 123408 to 124008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,208 DEBUG Processing 90/516 atomic regions from SNP 26789 to 27390 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,220 DEBUG Processing 81/346 atomic regions from SNP 24064 to 24664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,388 DEBUG Processing 413/529 atomic regions from SNP 123708 to 124308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,392 DEBUG Processing 82/346 atomic regions from SNP 24364 to 24964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,401 DEBUG Processing 91/516 atomic regions from SNP 27090 to 27691 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,562 DEBUG Processing 83/346 atomic regions from SNP 24664 to 25264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,580 DEBUG Processing 414/529 atomic regions from SNP 124008 to 124608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,593 DEBUG Processing 92/516 atomic regions from SNP 27391 to 27992 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,733 DEBUG Processing 84/346 atomic regions from SNP 24964 to 25564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,766 DEBUG Processing 415/529 atomic regions from SNP 124308 to 124908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,786 DEBUG Processing 93/516 atomic regions from SNP 27692 to 28293 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:17,907 DEBUG Processing 85/346 atomic regions from SNP 25264 to 25864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:17,955 DEBUG Processing 416/529 atomic regions from SNP 124608 to 125208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:17,984 DEBUG Processing 94/516 atomic regions from SNP 27993 to 28594 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,078 DEBUG Processing 86/346 atomic regions from SNP 25564 to 26164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,144 DEBUG Processing 417/529 atomic regions from SNP 124908 to 125508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,184 DEBUG Processing 95/516 atomic regions from SNP 28294 to 28895 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,245 DEBUG Processing 87/346 atomic regions from SNP 25864 to 26464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,336 DEBUG Processing 418/529 atomic regions from SNP 125208 to 125808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,381 DEBUG Processing 96/516 atomic regions from SNP 28595 to 29196 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,426 DEBUG Processing 88/346 atomic regions from SNP 26164 to 26764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,523 DEBUG Processing 419/529 atomic regions from SNP 125508 to 126108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,578 DEBUG Processing 97/516 atomic regions from SNP 28896 to 29497 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,599 DEBUG Processing 89/346 atomic regions from SNP 26464 to 27064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,712 DEBUG Processing 420/529 atomic regions from SNP 125808 to 126408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,771 DEBUG Processing 90/346 atomic regions from SNP 26764 to 27364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,773 DEBUG Processing 98/516 atomic regions from SNP 29197 to 29798 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:18,896 DEBUG Processing 421/529 atomic regions from SNP 126108 to 126708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:18,960 DEBUG Processing 91/346 atomic regions from SNP 27064 to 27664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:18,967 DEBUG Processing 99/516 atomic regions from SNP 29498 to 30099 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,084 DEBUG Processing 422/529 atomic regions from SNP 126408 to 127008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,126 DEBUG Processing 92/346 atomic regions from SNP 27364 to 27964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,158 DEBUG Processing 100/516 atomic regions from SNP 29799 to 30400 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,269 DEBUG Processing 423/529 atomic regions from SNP 126708 to 127308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,292 DEBUG Processing 93/346 atomic regions from SNP 27664 to 28264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,351 DEBUG Processing 101/516 atomic regions from SNP 30100 to 30701 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,457 DEBUG Processing 94/346 atomic regions from SNP 27964 to 28564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,461 DEBUG Processing 424/529 atomic regions from SNP 127008 to 127608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,546 DEBUG Processing 102/516 atomic regions from SNP 30401 to 31002 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,621 DEBUG Processing 95/346 atomic regions from SNP 28264 to 28864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,646 DEBUG Processing 425/529 atomic regions from SNP 127308 to 127908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,738 DEBUG Processing 103/516 atomic regions from SNP 30702 to 31303 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,792 DEBUG Processing 96/346 atomic regions from SNP 28564 to 29164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:19,841 DEBUG Processing 426/529 atomic regions from SNP 127608 to 128208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:19,965 DEBUG Processing 104/516 atomic regions from SNP 31003 to 31604 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:19,970 DEBUG Processing 97/346 atomic regions from SNP 28864 to 29464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,036 DEBUG Processing 427/529 atomic regions from SNP 127908 to 128508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,147 DEBUG Processing 98/346 atomic regions from SNP 29164 to 29764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,187 DEBUG Processing 105/516 atomic regions from SNP 31304 to 31905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,248 DEBUG Processing 428/529 atomic regions from SNP 128208 to 128808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,371 DEBUG Processing 99/346 atomic regions from SNP 29464 to 30064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,440 DEBUG Processing 106/516 atomic regions from SNP 31605 to 32206 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,461 DEBUG Processing 429/529 atomic regions from SNP 128508 to 129108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,534 DEBUG Processing 100/346 atomic regions from SNP 29764 to 30364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,637 DEBUG Processing 107/516 atomic regions from SNP 31906 to 32507 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,654 DEBUG Processing 430/529 atomic regions from SNP 128808 to 129408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,700 DEBUG Processing 101/346 atomic regions from SNP 30064 to 30664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:20,831 DEBUG Processing 108/516 atomic regions from SNP 32207 to 32808 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:20,848 DEBUG Processing 431/529 atomic regions from SNP 129108 to 129708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:20,863 DEBUG Processing 102/346 atomic regions from SNP 30364 to 30964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,019 DEBUG Processing 109/516 atomic regions from SNP 32508 to 33109 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,029 DEBUG Processing 103/346 atomic regions from SNP 30664 to 31264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,041 DEBUG Processing 432/529 atomic regions from SNP 129408 to 130008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,196 DEBUG Processing 104/346 atomic regions from SNP 30964 to 31564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,209 DEBUG Processing 110/516 atomic regions from SNP 32809 to 33410 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,237 DEBUG Processing 433/529 atomic regions from SNP 129708 to 130308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,363 DEBUG Processing 105/346 atomic regions from SNP 31264 to 31864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,399 DEBUG Processing 111/516 atomic regions from SNP 33110 to 33711 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,428 DEBUG Processing 434/529 atomic regions from SNP 130008 to 130608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,522 DEBUG Processing 106/346 atomic regions from SNP 31564 to 32164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,583 DEBUG Processing 112/516 atomic regions from SNP 33411 to 34012 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,619 DEBUG Processing 435/529 atomic regions from SNP 130308 to 130908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,686 DEBUG Processing 107/346 atomic regions from SNP 31864 to 32464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,776 DEBUG Processing 113/516 atomic regions from SNP 33712 to 34313 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:21,811 DEBUG Processing 436/529 atomic regions from SNP 130608 to 131208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:21,865 DEBUG Processing 108/346 atomic regions from SNP 32164 to 32764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:21,985 DEBUG Processing 114/516 atomic regions from SNP 34013 to 34614 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,013 DEBUG Processing 437/529 atomic regions from SNP 130908 to 131508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,050 DEBUG Processing 109/346 atomic regions from SNP 32464 to 33064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,197 DEBUG Processing 115/516 atomic regions from SNP 34314 to 34915 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,236 DEBUG Processing 438/529 atomic regions from SNP 131208 to 131808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,238 DEBUG Processing 110/346 atomic regions from SNP 32764 to 33364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,406 DEBUG Processing 116/516 atomic regions from SNP 34615 to 35216 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,421 DEBUG Processing 111/346 atomic regions from SNP 33064 to 33664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,434 DEBUG Processing 439/529 atomic regions from SNP 131508 to 132108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,622 DEBUG Processing 112/346 atomic regions from SNP 33364 to 33964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,623 DEBUG Processing 117/516 atomic regions from SNP 34916 to 35517 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,650 DEBUG Processing 440/529 atomic regions from SNP 131808 to 132408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,811 DEBUG Processing 113/346 atomic regions from SNP 33664 to 34264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:22,843 DEBUG Processing 118/516 atomic regions from SNP 35217 to 35818 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:22,852 DEBUG Processing 441/529 atomic regions from SNP 132108 to 132708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:22,988 DEBUG Processing 114/346 atomic regions from SNP 33964 to 34564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,045 DEBUG Processing 119/516 atomic regions from SNP 35518 to 36119 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,049 DEBUG Processing 442/529 atomic regions from SNP 132408 to 133008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,162 DEBUG Processing 115/346 atomic regions from SNP 34264 to 34864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,239 DEBUG Processing 120/516 atomic regions from SNP 35819 to 36420 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,247 DEBUG Processing 443/529 atomic regions from SNP 132708 to 133308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,330 DEBUG Processing 116/346 atomic regions from SNP 34564 to 35164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,438 DEBUG Processing 121/516 atomic regions from SNP 36120 to 36721 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,444 DEBUG Processing 444/529 atomic regions from SNP 133008 to 133608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,522 DEBUG Processing 117/346 atomic regions from SNP 34864 to 35464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,637 DEBUG Processing 445/529 atomic regions from SNP 133308 to 133908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,646 DEBUG Processing 122/516 atomic regions from SNP 36421 to 37022 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:23,687 DEBUG Processing 118/346 atomic regions from SNP 35164 to 35764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,840 DEBUG Processing 446/529 atomic regions from SNP 133608 to 134208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:23,855 DEBUG Processing 119/346 atomic regions from SNP 35464 to 36064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:23,866 DEBUG Processing 123/516 atomic regions from SNP 36722 to 37323 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,038 DEBUG Processing 120/346 atomic regions from SNP 35764 to 36364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,054 DEBUG Processing 447/529 atomic regions from SNP 133908 to 134508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,071 DEBUG Processing 124/516 atomic regions from SNP 37023 to 37624 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,217 DEBUG Processing 121/346 atomic regions from SNP 36064 to 36664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,258 DEBUG Processing 448/529 atomic regions from SNP 134208 to 134808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,285 DEBUG Processing 125/516 atomic regions from SNP 37324 to 37925 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,387 DEBUG Processing 122/346 atomic regions from SNP 36364 to 36964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,457 DEBUG Processing 449/529 atomic regions from SNP 134508 to 135108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,488 DEBUG Processing 126/516 atomic regions from SNP 37625 to 38226 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,555 DEBUG Processing 123/346 atomic regions from SNP 36664 to 37264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,654 DEBUG Processing 450/529 atomic regions from SNP 134808 to 135408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,685 DEBUG Processing 127/516 atomic regions from SNP 37926 to 38527 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,769 DEBUG Processing 124/346 atomic regions from SNP 36964 to 37564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:24,856 DEBUG Processing 451/529 atomic regions from SNP 135108 to 135708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:24,881 DEBUG Processing 128/516 atomic regions from SNP 38227 to 38828 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:24,965 DEBUG Processing 125/346 atomic regions from SNP 37264 to 37864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,056 DEBUG Processing 452/529 atomic regions from SNP 135408 to 136008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,080 DEBUG Processing 129/516 atomic regions from SNP 38528 to 39129 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,172 DEBUG Processing 126/346 atomic regions from SNP 37564 to 38164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,257 DEBUG Processing 453/529 atomic regions from SNP 135708 to 136308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,285 DEBUG Processing 130/516 atomic regions from SNP 38829 to 39430 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,357 DEBUG Processing 127/346 atomic regions from SNP 37864 to 38464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,461 DEBUG Processing 454/529 atomic regions from SNP 136008 to 136608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,497 DEBUG Processing 131/516 atomic regions from SNP 39130 to 39731 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,539 DEBUG Processing 128/346 atomic regions from SNP 38164 to 38764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,666 DEBUG Processing 455/529 atomic regions from SNP 136308 to 136908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,706 DEBUG Processing 132/516 atomic regions from SNP 39431 to 40032 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:25,722 DEBUG Processing 129/346 atomic regions from SNP 38464 to 39064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,869 DEBUG Processing 456/529 atomic regions from SNP 136608 to 137208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:25,906 DEBUG Processing 130/346 atomic regions from SNP 38764 to 39364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:25,913 DEBUG Processing 133/516 atomic regions from SNP 39732 to 40333 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,069 DEBUG Processing 457/529 atomic regions from SNP 136908 to 137508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,086 DEBUG Processing 131/346 atomic regions from SNP 39064 to 39664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,128 DEBUG Processing 134/516 atomic regions from SNP 40033 to 40634 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,271 DEBUG Processing 132/346 atomic regions from SNP 39364 to 39964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,273 DEBUG Processing 458/529 atomic regions from SNP 137208 to 137808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,336 DEBUG Processing 135/516 atomic regions from SNP 40334 to 40935 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,460 DEBUG Processing 133/346 atomic regions from SNP 39664 to 40264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,471 DEBUG Processing 459/529 atomic regions from SNP 137508 to 138108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,544 DEBUG Processing 136/516 atomic regions from SNP 40635 to 41236 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,653 DEBUG Processing 134/346 atomic regions from SNP 39964 to 40564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,665 DEBUG Processing 460/529 atomic regions from SNP 137808 to 138408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,748 DEBUG Processing 137/516 atomic regions from SNP 40936 to 41537 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:26,827 DEBUG Processing 135/346 atomic regions from SNP 40264 to 40864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:26,862 DEBUG Processing 461/529 atomic regions from SNP 138108 to 138708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:26,949 DEBUG Processing 138/516 atomic regions from SNP 41237 to 41838 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,005 DEBUG Processing 136/346 atomic regions from SNP 40564 to 41164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,055 DEBUG Processing 462/529 atomic regions from SNP 138408 to 139008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,147 DEBUG Processing 139/516 atomic regions from SNP 41538 to 42139 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,196 DEBUG Processing 137/346 atomic regions from SNP 40864 to 41464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,248 DEBUG Processing 463/529 atomic regions from SNP 138708 to 139308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,343 DEBUG Processing 140/516 atomic regions from SNP 41839 to 42440 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,373 DEBUG Processing 138/346 atomic regions from SNP 41164 to 41764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,447 DEBUG Processing 464/529 atomic regions from SNP 139008 to 139608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,542 DEBUG Processing 141/516 atomic regions from SNP 42140 to 42741 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,546 DEBUG Processing 139/346 atomic regions from SNP 41464 to 42064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,653 DEBUG Processing 465/529 atomic regions from SNP 139308 to 139908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,723 DEBUG Processing 140/346 atomic regions from SNP 41764 to 42364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,742 DEBUG Processing 142/516 atomic regions from SNP 42441 to 43042 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:27,867 DEBUG Processing 466/529 atomic regions from SNP 139608 to 140208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:27,903 DEBUG Processing 141/346 atomic regions from SNP 42064 to 42664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:27,945 DEBUG Processing 143/516 atomic regions from SNP 42742 to 43343 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,076 DEBUG Processing 142/346 atomic regions from SNP 42364 to 42964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,078 DEBUG Processing 467/529 atomic regions from SNP 139908 to 140508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,142 DEBUG Processing 144/516 atomic regions from SNP 43043 to 43644 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,248 DEBUG Processing 143/346 atomic regions from SNP 42664 to 43264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,302 DEBUG Processing 468/529 atomic regions from SNP 140208 to 140808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,336 DEBUG Processing 145/516 atomic regions from SNP 43344 to 43945 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,425 DEBUG Processing 144/346 atomic regions from SNP 42964 to 43564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,526 DEBUG Processing 469/529 atomic regions from SNP 140508 to 141108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,535 DEBUG Processing 146/516 atomic regions from SNP 43645 to 44246 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,603 DEBUG Processing 145/346 atomic regions from SNP 43264 to 43864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,727 DEBUG Processing 470/529 atomic regions from SNP 140808 to 141408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,735 DEBUG Processing 147/516 atomic regions from SNP 43946 to 44547 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,779 DEBUG Processing 146/346 atomic regions from SNP 43564 to 44164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:28,928 DEBUG Processing 471/529 atomic regions from SNP 141108 to 141708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:28,937 DEBUG Processing 148/516 atomic regions from SNP 44247 to 44848 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:28,957 DEBUG Processing 147/346 atomic regions from SNP 43864 to 44464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,127 DEBUG Processing 472/529 atomic regions from SNP 141408 to 142008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,132 DEBUG Processing 148/346 atomic regions from SNP 44164 to 44764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,135 DEBUG Processing 149/516 atomic regions from SNP 44548 to 45149 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,303 DEBUG Processing 149/346 atomic regions from SNP 44464 to 45064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,329 DEBUG Processing 150/516 atomic regions from SNP 44849 to 45450 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,345 DEBUG Processing 473/529 atomic regions from SNP 141708 to 142308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,470 DEBUG Processing 150/346 atomic regions from SNP 44764 to 45364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,521 DEBUG Processing 151/516 atomic regions from SNP 45150 to 45751 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,549 DEBUG Processing 474/529 atomic regions from SNP 142008 to 142608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,637 DEBUG Processing 151/346 atomic regions from SNP 45064 to 45664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,708 DEBUG Processing 152/516 atomic regions from SNP 45451 to 46052 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,746 DEBUG Processing 475/529 atomic regions from SNP 142308 to 142908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,804 DEBUG Processing 152/346 atomic regions from SNP 45364 to 45964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:29,894 DEBUG Processing 153/516 atomic regions from SNP 45752 to 46353 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:29,944 DEBUG Processing 476/529 atomic regions from SNP 142608 to 143208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:29,994 DEBUG Processing 153/346 atomic regions from SNP 45664 to 46264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,085 DEBUG Processing 154/516 atomic regions from SNP 46053 to 46654 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,138 DEBUG Processing 477/529 atomic regions from SNP 142908 to 143508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,176 DEBUG Processing 154/346 atomic regions from SNP 45964 to 46564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,273 DEBUG Processing 155/516 atomic regions from SNP 46354 to 46955 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,332 DEBUG Processing 478/529 atomic regions from SNP 143208 to 143808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,346 DEBUG Processing 155/346 atomic regions from SNP 46264 to 46864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,459 DEBUG Processing 156/516 atomic regions from SNP 46655 to 47256 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,516 DEBUG Processing 156/346 atomic regions from SNP 46564 to 47164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,525 DEBUG Processing 479/529 atomic regions from SNP 143508 to 144108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,644 DEBUG Processing 157/516 atomic regions from SNP 46956 to 47557 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,686 DEBUG Processing 157/346 atomic regions from SNP 46864 to 47464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,716 DEBUG Processing 480/529 atomic regions from SNP 143808 to 144408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:30,831 DEBUG Processing 158/516 atomic regions from SNP 47257 to 47858 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:30,855 DEBUG Processing 158/346 atomic regions from SNP 47164 to 47764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:30,938 DEBUG Processing 481/529 atomic regions from SNP 144108 to 144708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,027 DEBUG Processing 159/346 atomic regions from SNP 47464 to 48064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,038 DEBUG Processing 159/516 atomic regions from SNP 47558 to 48159 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,169 DEBUG Processing 482/529 atomic regions from SNP 144408 to 145008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,209 DEBUG Processing 160/346 atomic regions from SNP 47764 to 48364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,243 DEBUG Processing 160/516 atomic regions from SNP 47859 to 48460 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,391 DEBUG Processing 161/346 atomic regions from SNP 48064 to 48664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,396 DEBUG Processing 483/529 atomic regions from SNP 144708 to 145308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,448 DEBUG Processing 161/516 atomic regions from SNP 48160 to 48761 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,586 DEBUG Processing 162/346 atomic regions from SNP 48364 to 48964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,600 DEBUG Processing 484/529 atomic regions from SNP 145008 to 145608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,662 DEBUG Processing 162/516 atomic regions from SNP 48461 to 49062 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,763 DEBUG Processing 163/346 atomic regions from SNP 48664 to 49264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:31,807 DEBUG Processing 485/529 atomic regions from SNP 145308 to 145908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:31,863 DEBUG Processing 163/516 atomic regions from SNP 48762 to 49363 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:31,945 DEBUG Processing 164/346 atomic regions from SNP 48964 to 49564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,011 DEBUG Processing 486/529 atomic regions from SNP 145608 to 146208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,062 DEBUG Processing 164/516 atomic regions from SNP 49063 to 49664 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,122 DEBUG Processing 165/346 atomic regions from SNP 49264 to 49864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,215 DEBUG Processing 487/529 atomic regions from SNP 145908 to 146508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,256 DEBUG Processing 165/516 atomic regions from SNP 49364 to 49965 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,298 DEBUG Processing 166/346 atomic regions from SNP 49564 to 50164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,432 DEBUG Processing 488/529 atomic regions from SNP 146208 to 146808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,467 DEBUG Processing 167/346 atomic regions from SNP 49864 to 50464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,480 DEBUG Processing 166/516 atomic regions from SNP 49665 to 50266 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,630 DEBUG Processing 489/529 atomic regions from SNP 146508 to 147108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,635 DEBUG Processing 168/346 atomic regions from SNP 50164 to 50764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,700 DEBUG Processing 167/516 atomic regions from SNP 49966 to 50567 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,799 DEBUG Processing 169/346 atomic regions from SNP 50464 to 51064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:32,818 DEBUG Processing 490/529 atomic regions from SNP 146808 to 147408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:32,907 DEBUG Processing 168/516 atomic regions from SNP 50267 to 50868 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:32,965 DEBUG Processing 170/346 atomic regions from SNP 50764 to 51364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,009 DEBUG Processing 491/529 atomic regions from SNP 147108 to 147708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,107 DEBUG Processing 169/516 atomic regions from SNP 50568 to 51169 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,135 DEBUG Processing 171/346 atomic regions from SNP 51064 to 51664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,203 DEBUG Processing 492/529 atomic regions from SNP 147408 to 148008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,296 DEBUG Processing 170/516 atomic regions from SNP 50869 to 51470 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,301 DEBUG Processing 172/346 atomic regions from SNP 51364 to 51964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,415 DEBUG Processing 493/529 atomic regions from SNP 147708 to 148308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,495 DEBUG Processing 173/346 atomic regions from SNP 51664 to 52264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,509 DEBUG Processing 171/516 atomic regions from SNP 51170 to 51771 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,620 DEBUG Processing 494/529 atomic regions from SNP 148008 to 148608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,689 DEBUG Processing 174/346 atomic regions from SNP 51964 to 52564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,722 DEBUG Processing 172/516 atomic regions from SNP 51471 to 52072 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:33,814 DEBUG Processing 495/529 atomic regions from SNP 148308 to 148908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:33,849 DEBUG Processing 175/346 atomic regions from SNP 52264 to 52864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:33,901 DEBUG Processing 173/516 atomic regions from SNP 51772 to 52373 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,016 DEBUG Processing 496/529 atomic regions from SNP 148608 to 149208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,027 DEBUG Processing 176/346 atomic regions from SNP 52564 to 53164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,102 DEBUG Processing 174/516 atomic regions from SNP 52073 to 52674 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,199 DEBUG Processing 177/346 atomic regions from SNP 52864 to 53464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,215 DEBUG Processing 497/529 atomic regions from SNP 148908 to 149508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,289 DEBUG Processing 175/516 atomic regions from SNP 52374 to 52975 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,366 DEBUG Processing 178/346 atomic regions from SNP 53164 to 53764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,414 DEBUG Processing 498/529 atomic regions from SNP 149208 to 149808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,484 DEBUG Processing 176/516 atomic regions from SNP 52675 to 53276 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,541 DEBUG Processing 179/346 atomic regions from SNP 53464 to 54064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,616 DEBUG Processing 499/529 atomic regions from SNP 149508 to 150108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,690 DEBUG Processing 177/516 atomic regions from SNP 52976 to 53577 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:34,708 DEBUG Processing 180/346 atomic regions from SNP 53764 to 54364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,818 DEBUG Processing 500/529 atomic regions from SNP 149808 to 150408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:34,876 DEBUG Processing 181/346 atomic regions from SNP 54064 to 54664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:34,881 DEBUG Processing 178/516 atomic regions from SNP 53277 to 53878 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,014 DEBUG Processing 501/529 atomic regions from SNP 150108 to 150708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,044 DEBUG Processing 182/346 atomic regions from SNP 54364 to 54964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,073 DEBUG Processing 179/516 atomic regions from SNP 53578 to 54179 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,213 DEBUG Processing 183/346 atomic regions from SNP 54664 to 55264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,214 DEBUG Processing 502/529 atomic regions from SNP 150408 to 151008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,263 DEBUG Processing 180/516 atomic regions from SNP 53879 to 54480 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,380 DEBUG Processing 184/346 atomic regions from SNP 54964 to 55564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,412 DEBUG Processing 503/529 atomic regions from SNP 150708 to 151308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,455 DEBUG Processing 181/516 atomic regions from SNP 54180 to 54781 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,549 DEBUG Processing 185/346 atomic regions from SNP 55264 to 55864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,611 DEBUG Processing 504/529 atomic regions from SNP 151008 to 151608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,666 DEBUG Processing 182/516 atomic regions from SNP 54481 to 55082 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,707 DEBUG Processing 186/346 atomic regions from SNP 55564 to 56164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,805 DEBUG Processing 505/529 atomic regions from SNP 151308 to 151908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:35,861 DEBUG Processing 187/346 atomic regions from SNP 55864 to 56464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:35,872 DEBUG Processing 183/516 atomic regions from SNP 54782 to 55383 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:35,995 DEBUG Processing 506/529 atomic regions from SNP 151608 to 152208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,016 DEBUG Processing 188/346 atomic regions from SNP 56164 to 56764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,076 DEBUG Processing 184/516 atomic regions from SNP 55083 to 55684 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,171 DEBUG Processing 189/346 atomic regions from SNP 56464 to 57064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,184 DEBUG Processing 507/529 atomic regions from SNP 151908 to 152508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,288 DEBUG Processing 185/516 atomic regions from SNP 55384 to 55985 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,325 DEBUG Processing 190/346 atomic regions from SNP 56764 to 57364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,372 DEBUG Processing 508/529 atomic regions from SNP 152208 to 152808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,483 DEBUG Processing 191/346 atomic regions from SNP 57064 to 57664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,514 DEBUG Processing 186/516 atomic regions from SNP 55685 to 56286 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,563 DEBUG Processing 509/529 atomic regions from SNP 152508 to 153108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,640 DEBUG Processing 192/346 atomic regions from SNP 57364 to 57964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,720 DEBUG Processing 187/516 atomic regions from SNP 55986 to 56587 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,754 DEBUG Processing 510/529 atomic regions from SNP 152808 to 153408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,796 DEBUG Processing 193/346 atomic regions from SNP 57664 to 58264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:36,909 DEBUG Processing 188/516 atomic regions from SNP 56287 to 56888 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:36,948 DEBUG Processing 511/529 atomic regions from SNP 153108 to 153708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:36,954 DEBUG Processing 194/346 atomic regions from SNP 57964 to 58564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,090 DEBUG Processing 189/516 atomic regions from SNP 56588 to 57189 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,110 DEBUG Processing 195/346 atomic regions from SNP 58264 to 58864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,140 DEBUG Processing 512/529 atomic regions from SNP 153408 to 154008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,269 DEBUG Processing 196/346 atomic regions from SNP 58564 to 59164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,301 DEBUG Processing 190/516 atomic regions from SNP 56889 to 57490 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,334 DEBUG Processing 513/529 atomic regions from SNP 153708 to 154308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,425 DEBUG Processing 197/346 atomic regions from SNP 58864 to 59464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,512 DEBUG Processing 191/516 atomic regions from SNP 57190 to 57791 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,529 DEBUG Processing 514/529 atomic regions from SNP 154008 to 154608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,577 DEBUG Processing 198/346 atomic regions from SNP 59164 to 59764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,717 DEBUG Processing 192/516 atomic regions from SNP 57491 to 58092 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,729 DEBUG Processing 515/529 atomic regions from SNP 154308 to 154908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:37,738 DEBUG Processing 199/346 atomic regions from SNP 59464 to 60064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,906 DEBUG Processing 200/346 atomic regions from SNP 59764 to 60364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:37,928 DEBUG Processing 193/516 atomic regions from SNP 57792 to 58393 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:37,932 DEBUG Processing 516/529 atomic regions from SNP 154608 to 155208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,066 DEBUG Processing 201/346 atomic regions from SNP 60064 to 60664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,127 DEBUG Processing 194/516 atomic regions from SNP 58093 to 58694 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,131 DEBUG Processing 517/529 atomic regions from SNP 154908 to 155508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,244 DEBUG Processing 202/346 atomic regions from SNP 60364 to 60964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,338 DEBUG Processing 518/529 atomic regions from SNP 155208 to 155808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,348 DEBUG Processing 195/516 atomic regions from SNP 58394 to 58995 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,397 DEBUG Processing 203/346 atomic regions from SNP 60664 to 61264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,537 DEBUG Processing 519/529 atomic regions from SNP 155508 to 156108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,553 DEBUG Processing 204/346 atomic regions from SNP 60964 to 61564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,562 DEBUG Processing 196/516 atomic regions from SNP 58695 to 59296 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,715 DEBUG Processing 205/346 atomic regions from SNP 61264 to 61864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,740 DEBUG Processing 520/529 atomic regions from SNP 155808 to 156408 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:38,778 DEBUG Processing 197/516 atomic regions from SNP 58996 to 59597 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:38,878 DEBUG Processing 206/346 atomic regions from SNP 61564 to 62164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:38,957 DEBUG Processing 521/529 atomic regions from SNP 156108 to 156708 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,008 DEBUG Processing 198/516 atomic regions from SNP 59297 to 59898 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,050 DEBUG Processing 207/346 atomic regions from SNP 61864 to 62464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,165 DEBUG Processing 522/529 atomic regions from SNP 156408 to 157008 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,211 DEBUG Processing 199/516 atomic regions from SNP 59598 to 60199 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,233 DEBUG Processing 208/346 atomic regions from SNP 62164 to 62764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,369 DEBUG Processing 523/529 atomic regions from SNP 156708 to 157308 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,410 DEBUG Processing 209/346 atomic regions from SNP 62464 to 63064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,415 DEBUG Processing 200/516 atomic regions from SNP 59899 to 60500 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,574 DEBUG Processing 524/529 atomic regions from SNP 157008 to 157608 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,589 DEBUG Processing 210/346 atomic regions from SNP 62764 to 63364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,620 DEBUG Processing 201/516 atomic regions from SNP 60200 to 60801 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,771 DEBUG Processing 211/346 atomic regions from SNP 63064 to 63664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,783 DEBUG Processing 525/529 atomic regions from SNP 157308 to 157908 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:39,830 DEBUG Processing 202/516 atomic regions from SNP 60501 to 61102 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:39,978 DEBUG Processing 212/346 atomic regions from SNP 63364 to 63964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:39,998 DEBUG Processing 526/529 atomic regions from SNP 157608 to 158208 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,047 DEBUG Processing 203/516 atomic regions from SNP 60802 to 61403 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,169 DEBUG Processing 213/346 atomic regions from SNP 63664 to 64264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,215 DEBUG Processing 527/529 atomic regions from SNP 157908 to 158508 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,286 DEBUG Processing 204/516 atomic regions from SNP 61103 to 61704 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,335 DEBUG Processing 214/346 atomic regions from SNP 63964 to 64564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,413 DEBUG Processing 528/529 atomic regions from SNP 158208 to 158808 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,501 DEBUG Processing 215/346 atomic regions from SNP 64264 to 64864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,508 DEBUG Processing 205/516 atomic regions from SNP 61404 to 62005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,613 DEBUG Processing 529/529 atomic regions from SNP 158508 to 159108 for chr17 (subchromosome 1 of 1). 2025-01-31 09:59:40,667 DEBUG Processing 216/346 atomic regions from SNP 64564 to 65164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,720 DEBUG Processing 206/516 atomic regions from SNP 61705 to 62305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,762 DEBUG Unique SNPs positions in subchromosome 1: 159109 2025-01-31 09:59:40,835 DEBUG Processing 217/346 atomic regions from SNP 64864 to 65464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:40,931 DEBUG Processing 207/516 atomic regions from SNP 62005 to 62605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:40,994 DEBUG Processing 218/346 atomic regions from SNP 65164 to 65764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,119 DEBUG Processing 208/516 atomic regions from SNP 62305 to 62905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,152 DEBUG Processing 219/346 atomic regions from SNP 65464 to 66064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,298 DEBUG Processing 209/516 atomic regions from SNP 62605 to 63205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,321 DEBUG Processing 220/346 atomic regions from SNP 65764 to 66364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,475 DEBUG Processing 210/516 atomic regions from SNP 62905 to 63505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,502 DEBUG Processing 221/346 atomic regions from SNP 66064 to 66664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,653 DEBUG Processing 211/516 atomic regions from SNP 63205 to 63805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,684 DEBUG Processing 222/346 atomic regions from SNP 66364 to 66964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:41,835 DEBUG Processing 212/516 atomic regions from SNP 63505 to 64105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:41,845 DEBUG Processing 223/346 atomic regions from SNP 66664 to 67264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,008 DEBUG Processing 224/346 atomic regions from SNP 66964 to 67564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,020 DEBUG Processing 213/516 atomic regions from SNP 63805 to 64405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,164 DEBUG Processing 225/346 atomic regions from SNP 67264 to 67864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,222 DEBUG Processing 214/516 atomic regions from SNP 64105 to 64705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,321 DEBUG Processing 226/346 atomic regions from SNP 67564 to 68164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,420 DEBUG Processing 215/516 atomic regions from SNP 64405 to 65005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,481 DEBUG Processing 227/346 atomic regions from SNP 67864 to 68464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,619 DEBUG Processing 216/516 atomic regions from SNP 64705 to 65305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,660 DEBUG Processing 228/346 atomic regions from SNP 68164 to 68764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:42,812 DEBUG Processing 217/516 atomic regions from SNP 65005 to 65605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:42,859 DEBUG Processing 229/346 atomic regions from SNP 68464 to 69064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,007 DEBUG Processing 218/516 atomic regions from SNP 65305 to 65905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,055 DEBUG Processing 230/346 atomic regions from SNP 68764 to 69364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,200 DEBUG Processing 219/516 atomic regions from SNP 65605 to 66205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,249 DEBUG Processing 231/346 atomic regions from SNP 69064 to 69664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,395 DEBUG Processing 220/516 atomic regions from SNP 65905 to 66505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,427 DEBUG Processing 232/346 atomic regions from SNP 69364 to 69964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,592 DEBUG Processing 221/516 atomic regions from SNP 66205 to 66805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,607 DEBUG Processing 233/346 atomic regions from SNP 69664 to 70264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,789 DEBUG Processing 234/346 atomic regions from SNP 69964 to 70564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,792 DEBUG Processing 222/516 atomic regions from SNP 66505 to 67105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:43,967 DEBUG Processing 235/346 atomic regions from SNP 70264 to 70864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:43,986 DEBUG Processing 223/516 atomic regions from SNP 66805 to 67405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,141 DEBUG Processing 236/346 atomic regions from SNP 70564 to 71164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,193 DEBUG Processing 224/516 atomic regions from SNP 67105 to 67705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,313 DEBUG Processing 237/346 atomic regions from SNP 70864 to 71464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,405 DEBUG Processing 225/516 atomic regions from SNP 67405 to 68005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,487 DEBUG Processing 238/346 atomic regions from SNP 71164 to 71764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,607 DEBUG Processing 226/516 atomic regions from SNP 67705 to 68305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,677 DEBUG Processing 239/346 atomic regions from SNP 71464 to 72064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:44,806 DEBUG Processing 227/516 atomic regions from SNP 68005 to 68605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:44,871 DEBUG Processing 240/346 atomic regions from SNP 71764 to 72364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,006 DEBUG Processing 228/516 atomic regions from SNP 68305 to 68905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,053 DEBUG Processing 241/346 atomic regions from SNP 72064 to 72664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,201 DEBUG Processing 229/516 atomic regions from SNP 68605 to 69205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,229 DEBUG Processing 242/346 atomic regions from SNP 72364 to 72964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,397 DEBUG Processing 230/516 atomic regions from SNP 68905 to 69505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,414 DEBUG Processing 243/346 atomic regions from SNP 72664 to 73264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,606 DEBUG Processing 231/516 atomic regions from SNP 69205 to 69805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,623 DEBUG Processing 244/346 atomic regions from SNP 72964 to 73564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,794 DEBUG Processing 232/516 atomic regions from SNP 69505 to 70105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:45,821 DEBUG Processing 245/346 atomic regions from SNP 73264 to 73864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:45,988 DEBUG Processing 233/516 atomic regions from SNP 69805 to 70405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,009 DEBUG Processing 246/346 atomic regions from SNP 73564 to 74164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,190 DEBUG Processing 247/346 atomic regions from SNP 73864 to 74464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,200 DEBUG Processing 234/516 atomic regions from SNP 70105 to 70705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,378 DEBUG Processing 248/346 atomic regions from SNP 74164 to 74764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,394 DEBUG Processing 235/516 atomic regions from SNP 70405 to 71005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,577 DEBUG Processing 249/346 atomic regions from SNP 74464 to 75064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,592 DEBUG Processing 236/516 atomic regions from SNP 70705 to 71305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,755 DEBUG Processing 250/346 atomic regions from SNP 74764 to 75364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,794 DEBUG Processing 237/516 atomic regions from SNP 71005 to 71605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:46,936 DEBUG Processing 251/346 atomic regions from SNP 75064 to 75664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:46,997 DEBUG Processing 238/516 atomic regions from SNP 71305 to 71905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,138 DEBUG Processing 252/346 atomic regions from SNP 75364 to 75964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,195 DEBUG Processing 239/516 atomic regions from SNP 71605 to 72205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,337 DEBUG Processing 253/346 atomic regions from SNP 75664 to 76264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,401 DEBUG Processing 240/516 atomic regions from SNP 71905 to 72505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,521 DEBUG Processing 254/346 atomic regions from SNP 75964 to 76564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,599 DEBUG Processing 241/516 atomic regions from SNP 72205 to 72805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,720 DEBUG Processing 255/346 atomic regions from SNP 76264 to 76864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:47,796 DEBUG Processing 242/516 atomic regions from SNP 72505 to 73105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:47,905 DEBUG Processing 256/346 atomic regions from SNP 76564 to 77164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,000 DEBUG Processing 243/516 atomic regions from SNP 72805 to 73405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,103 DEBUG Processing 257/346 atomic regions from SNP 76864 to 77464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,194 DEBUG Processing 244/516 atomic regions from SNP 73105 to 73705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,293 DEBUG Processing 258/346 atomic regions from SNP 77164 to 77764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,387 DEBUG Processing 245/516 atomic regions from SNP 73405 to 74005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,488 DEBUG Processing 259/346 atomic regions from SNP 77464 to 78064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,590 DEBUG Processing 246/516 atomic regions from SNP 73705 to 74305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,696 DEBUG Processing 260/346 atomic regions from SNP 77764 to 78364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,787 DEBUG Processing 247/516 atomic regions from SNP 74005 to 74605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:48,893 DEBUG Processing 261/346 atomic regions from SNP 78064 to 78664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:48,984 DEBUG Processing 248/516 atomic regions from SNP 74305 to 74905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,071 DEBUG Processing 262/346 atomic regions from SNP 78364 to 78964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,178 DEBUG Processing 249/516 atomic regions from SNP 74605 to 75205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,238 DEBUG Processing 263/346 atomic regions from SNP 78664 to 79264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,368 DEBUG Processing 250/516 atomic regions from SNP 74905 to 75505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,412 DEBUG Processing 264/346 atomic regions from SNP 78964 to 79564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,563 DEBUG Processing 251/516 atomic regions from SNP 75205 to 75805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,583 DEBUG Processing 265/346 atomic regions from SNP 79264 to 79864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,670 DEBUG Subchromosome time: 139.4694873089902, subchromosome SNPs: 159109 2025-01-31 09:59:49,671 DEBUG Estimated BADs: [2.04, 1.02, 0.29, 1.02, 8.17, 4.09, 20.43, 2.04, 10.22, 2.04, 0.68, 2.04, 6.13, 1.02, 10.22, 0.51, 2.04, 0.51, 2.04, 4.09, 0.34] SNP counts: [21183, 2995, 4189, 4176, 10986, 8191, 600, 780, 2574, 1661, 11571, 2384, 5793, 12682, 2716, 8520, 24435, 3446, 11126, 9887, 9214] SNP IDs counts: [21183, 2995, 4189, 4176, 10986, 8191, 600, 780, 2574, 1661, 11571, 2384, 5793, 12682, 2716, 8520, 24435, 3446, 11126, 9887, 9214] Critical gap: 528895bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 15.98Mbp, 17.93Mbp, 20.60Mbp, 23.53Mbp, 29.33Mbp, 33.82Mbp, 34.14Mbp, 34.57Mbp, 36.04Mbp, 37.02Mbp, 44.27Mbp, 45.54Mbp, 48.62Mbp, 55.93Mbp, 57.35Mbp, 62.37Mbp, 75.82Mbp, 77.84Mbp, 84.00Mbp, 89.27Mbp, 94.99Mbp] 2025-01-31 09:59:49,671 DEBUG chr17 time: 139.4699763969984 s 2025-01-31 09:59:49,751 DEBUG Processing 266/346 atomic regions from SNP 79564 to 80164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,755 DEBUG Processing 252/516 atomic regions from SNP 75505 to 76105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:49,764 DEBUG chr17: Fitting background model for 21 segments 2025-01-31 09:59:49,921 DEBUG Processing 267/346 atomic regions from SNP 79864 to 80464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:49,951 DEBUG Processing 253/516 atomic regions from SNP 75805 to 76405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,083 DEBUG Processing 268/346 atomic regions from SNP 80164 to 80764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,138 DEBUG Processing 254/516 atomic regions from SNP 76105 to 76705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,246 DEBUG Processing 269/346 atomic regions from SNP 80464 to 81064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,344 DEBUG Processing 255/516 atomic regions from SNP 76405 to 77005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,414 DEBUG Processing 270/346 atomic regions from SNP 80764 to 81364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,565 DEBUG Processing 256/516 atomic regions from SNP 76705 to 77305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,584 DEBUG Processing 271/346 atomic regions from SNP 81064 to 81664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,756 DEBUG Processing 272/346 atomic regions from SNP 81364 to 81964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,756 DEBUG Processing 257/516 atomic regions from SNP 77005 to 77605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:50,927 DEBUG Processing 273/346 atomic regions from SNP 81664 to 82264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:50,951 DEBUG Processing 258/516 atomic regions from SNP 77305 to 77905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,095 DEBUG Processing 274/346 atomic regions from SNP 81964 to 82564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,142 DEBUG Processing 259/516 atomic regions from SNP 77605 to 78205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,259 DEBUG Processing 275/346 atomic regions from SNP 82264 to 82864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,335 DEBUG Processing 260/516 atomic regions from SNP 77905 to 78505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,426 DEBUG Processing 276/346 atomic regions from SNP 82564 to 83164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,549 DEBUG Processing 261/516 atomic regions from SNP 78205 to 78805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,590 DEBUG Processing 277/346 atomic regions from SNP 82864 to 83464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,741 DEBUG Processing 262/516 atomic regions from SNP 78505 to 79105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,765 DEBUG Processing 278/346 atomic regions from SNP 83164 to 83764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:51,932 DEBUG Processing 263/516 atomic regions from SNP 78805 to 79405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:51,934 DEBUG Processing 279/346 atomic regions from SNP 83464 to 84064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,093 DEBUG Processing 280/346 atomic regions from SNP 83764 to 84364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,115 DEBUG Processing 264/516 atomic regions from SNP 79105 to 79705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,261 DEBUG Processing 281/346 atomic regions from SNP 84064 to 84664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,315 DEBUG Processing 265/516 atomic regions from SNP 79405 to 80005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,426 DEBUG Processing 282/346 atomic regions from SNP 84364 to 84964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,509 DEBUG Processing 266/516 atomic regions from SNP 79705 to 80305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,599 DEBUG Processing 283/346 atomic regions from SNP 84664 to 85264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,704 DEBUG Processing 267/516 atomic regions from SNP 80005 to 80605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,769 DEBUG Processing 284/346 atomic regions from SNP 84964 to 85564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:52,891 DEBUG Processing 268/516 atomic regions from SNP 80305 to 80905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:52,931 DEBUG Processing 285/346 atomic regions from SNP 85264 to 85864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,081 DEBUG Processing 269/516 atomic regions from SNP 80605 to 81205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,098 DEBUG Processing 286/346 atomic regions from SNP 85564 to 86164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,258 DEBUG Processing 287/346 atomic regions from SNP 85864 to 86464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,266 DEBUG Processing 270/516 atomic regions from SNP 80905 to 81505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,422 DEBUG Processing 288/346 atomic regions from SNP 86164 to 86764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,452 DEBUG Processing 271/516 atomic regions from SNP 81205 to 81805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,584 DEBUG Processing 289/346 atomic regions from SNP 86464 to 87064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,636 DEBUG Processing 272/516 atomic regions from SNP 81505 to 82105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,746 DEBUG Processing 290/346 atomic regions from SNP 86764 to 87364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:53,821 DEBUG Processing 273/516 atomic regions from SNP 81805 to 82405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:53,906 DEBUG Processing 291/346 atomic regions from SNP 87064 to 87664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,023 DEBUG Processing 274/516 atomic regions from SNP 82105 to 82705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,065 DEBUG Processing 292/346 atomic regions from SNP 87364 to 87964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,233 DEBUG Processing 293/346 atomic regions from SNP 87664 to 88264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,234 DEBUG Processing 275/516 atomic regions from SNP 82405 to 83005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,397 DEBUG Processing 294/346 atomic regions from SNP 87964 to 88564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,421 DEBUG Processing 276/516 atomic regions from SNP 82705 to 83305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,563 DEBUG Processing 295/346 atomic regions from SNP 88264 to 88864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,612 DEBUG Processing 277/516 atomic regions from SNP 83005 to 83605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,729 DEBUG Processing 296/346 atomic regions from SNP 88564 to 89164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:54,804 DEBUG Processing 278/516 atomic regions from SNP 83305 to 83905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:54,910 DEBUG Processing 297/346 atomic regions from SNP 88864 to 89464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,008 DEBUG Processing 279/516 atomic regions from SNP 83605 to 84205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,100 DEBUG Processing 298/346 atomic regions from SNP 89164 to 89764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,191 DEBUG Processing 280/516 atomic regions from SNP 83905 to 84505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,286 DEBUG Processing 299/346 atomic regions from SNP 89464 to 90064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,380 DEBUG Processing 281/516 atomic regions from SNP 84205 to 84805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,455 DEBUG Processing 300/346 atomic regions from SNP 89764 to 90364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,566 DEBUG Processing 282/516 atomic regions from SNP 84505 to 85105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,644 DEBUG Processing 301/346 atomic regions from SNP 90064 to 90664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,751 DEBUG Processing 283/516 atomic regions from SNP 84805 to 85405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:55,833 DEBUG Processing 302/346 atomic regions from SNP 90364 to 90964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:55,944 DEBUG Processing 284/516 atomic regions from SNP 85105 to 85705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,004 DEBUG Processing 303/346 atomic regions from SNP 90664 to 91264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,133 DEBUG Processing 285/516 atomic regions from SNP 85405 to 86005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,167 DEBUG Processing 304/346 atomic regions from SNP 90964 to 91564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,327 DEBUG Processing 286/516 atomic regions from SNP 85705 to 86305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,337 DEBUG Processing 305/346 atomic regions from SNP 91264 to 91864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,503 DEBUG Processing 306/346 atomic regions from SNP 91564 to 92164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,515 DEBUG Processing 287/516 atomic regions from SNP 86005 to 86605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,672 DEBUG Processing 307/346 atomic regions from SNP 91864 to 92464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,710 DEBUG Processing 288/516 atomic regions from SNP 86305 to 86905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:56,841 DEBUG Processing 308/346 atomic regions from SNP 92164 to 92764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:56,912 DEBUG Processing 289/516 atomic regions from SNP 86605 to 87205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,008 DEBUG Processing 309/346 atomic regions from SNP 92464 to 93064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,103 DEBUG Processing 290/516 atomic regions from SNP 86905 to 87505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,181 DEBUG Processing 310/346 atomic regions from SNP 92764 to 93364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,294 DEBUG Processing 291/516 atomic regions from SNP 87205 to 87805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,348 DEBUG Processing 311/346 atomic regions from SNP 93064 to 93664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,487 DEBUG Processing 292/516 atomic regions from SNP 87505 to 88105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,520 DEBUG Processing 312/346 atomic regions from SNP 93364 to 93964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,681 DEBUG Processing 293/516 atomic regions from SNP 87805 to 88405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:57,692 DEBUG Processing 313/346 atomic regions from SNP 93664 to 94264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,873 DEBUG Processing 314/346 atomic regions from SNP 93964 to 94564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:57,877 DEBUG Processing 294/516 atomic regions from SNP 88105 to 88705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,046 DEBUG Processing 315/346 atomic regions from SNP 94264 to 94864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,077 DEBUG Processing 295/516 atomic regions from SNP 88405 to 89005 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,212 DEBUG Processing 316/346 atomic regions from SNP 94564 to 95164 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,271 DEBUG Processing 296/516 atomic regions from SNP 88705 to 89305 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,397 DEBUG Processing 317/346 atomic regions from SNP 94864 to 95464 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,461 DEBUG Processing 297/516 atomic regions from SNP 89005 to 89605 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,587 DEBUG Processing 318/346 atomic regions from SNP 95164 to 95764 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,655 DEBUG Processing 298/516 atomic regions from SNP 89305 to 89905 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,765 DEBUG Processing 319/346 atomic regions from SNP 95464 to 96064 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:58,863 DEBUG Processing 299/516 atomic regions from SNP 89605 to 90205 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:58,950 DEBUG Processing 320/346 atomic regions from SNP 95764 to 96364 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,062 DEBUG Processing 300/516 atomic regions from SNP 89905 to 90505 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,127 DEBUG Processing 321/346 atomic regions from SNP 96064 to 96664 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,256 DEBUG Processing 301/516 atomic regions from SNP 90205 to 90805 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,292 DEBUG Processing 322/346 atomic regions from SNP 96364 to 96964 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,446 DEBUG Processing 302/516 atomic regions from SNP 90505 to 91105 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,462 DEBUG Processing 323/346 atomic regions from SNP 96664 to 97264 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,641 DEBUG Processing 303/516 atomic regions from SNP 90805 to 91405 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,641 DEBUG Processing 324/346 atomic regions from SNP 96964 to 97564 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,813 DEBUG Processing 325/346 atomic regions from SNP 97264 to 97864 for chr19 (subchromosome 1 of 1). 2025-01-31 09:59:59,834 DEBUG Processing 304/516 atomic regions from SNP 91105 to 91705 for chr18 (subchromosome 1 of 1). 2025-01-31 09:59:59,983 DEBUG Processing 326/346 atomic regions from SNP 97564 to 98164 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,029 DEBUG Processing 305/516 atomic regions from SNP 91405 to 92005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,151 DEBUG Processing 327/346 atomic regions from SNP 97864 to 98464 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,220 DEBUG Processing 306/516 atomic regions from SNP 91705 to 92305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,318 DEBUG Processing 328/346 atomic regions from SNP 98164 to 98764 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,418 DEBUG Processing 307/516 atomic regions from SNP 92005 to 92605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,488 DEBUG Processing 329/346 atomic regions from SNP 98464 to 99064 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,615 DEBUG Processing 308/516 atomic regions from SNP 92305 to 92905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,657 DEBUG Processing 330/346 atomic regions from SNP 98764 to 99364 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:00,812 DEBUG Processing 309/516 atomic regions from SNP 92605 to 93205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:00,834 DEBUG Processing 331/346 atomic regions from SNP 99064 to 99664 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,002 DEBUG Processing 310/516 atomic regions from SNP 92905 to 93505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,004 DEBUG Processing 332/346 atomic regions from SNP 99364 to 99964 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,179 DEBUG Processing 333/346 atomic regions from SNP 99664 to 100264 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,197 DEBUG Processing 311/516 atomic regions from SNP 93205 to 93805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,347 DEBUG Processing 334/346 atomic regions from SNP 99964 to 100564 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,390 DEBUG Processing 312/516 atomic regions from SNP 93505 to 94105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,517 DEBUG Processing 335/346 atomic regions from SNP 100264 to 100864 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,584 DEBUG Processing 313/516 atomic regions from SNP 93805 to 94405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,701 DEBUG Processing 336/346 atomic regions from SNP 100564 to 101164 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:01,792 DEBUG Processing 314/516 atomic regions from SNP 94105 to 94705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:01,883 DEBUG Processing 337/346 atomic regions from SNP 100864 to 101464 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,012 DEBUG Processing 315/516 atomic regions from SNP 94405 to 95005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,063 DEBUG Processing 338/346 atomic regions from SNP 101164 to 101764 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,252 DEBUG Processing 339/346 atomic regions from SNP 101464 to 102064 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,253 DEBUG Processing 316/516 atomic regions from SNP 94705 to 95305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,449 DEBUG Processing 340/346 atomic regions from SNP 101764 to 102364 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,490 DEBUG Processing 317/516 atomic regions from SNP 95005 to 95605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,632 DEBUG Processing 341/346 atomic regions from SNP 102064 to 102664 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,696 DEBUG Processing 318/516 atomic regions from SNP 95305 to 95905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:02,814 DEBUG Processing 342/346 atomic regions from SNP 102364 to 102964 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:02,916 DEBUG Processing 319/516 atomic regions from SNP 95605 to 96205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,010 DEBUG Processing 343/346 atomic regions from SNP 102664 to 103264 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,110 DEBUG Processing 320/516 atomic regions from SNP 95905 to 96505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,192 DEBUG Processing 344/346 atomic regions from SNP 102964 to 103564 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,310 DEBUG Processing 321/516 atomic regions from SNP 96205 to 96805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,386 DEBUG Processing 345/346 atomic regions from SNP 103264 to 103864 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,509 DEBUG Processing 322/516 atomic regions from SNP 96505 to 97105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,566 DEBUG Processing 346/346 atomic regions from SNP 103564 to 104164 for chr19 (subchromosome 1 of 1). 2025-01-31 10:00:03,690 DEBUG Unique SNPs positions in subchromosome 1: 104165 2025-01-31 10:00:03,697 DEBUG Processing 323/516 atomic regions from SNP 96805 to 97405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:03,895 DEBUG Processing 324/516 atomic regions from SNP 97105 to 97705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,081 DEBUG Processing 325/516 atomic regions from SNP 97405 to 98005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,279 DEBUG Processing 326/516 atomic regions from SNP 97705 to 98305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,466 DEBUG Processing 327/516 atomic regions from SNP 98005 to 98605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,656 DEBUG Processing 328/516 atomic regions from SNP 98305 to 98905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:04,846 DEBUG Processing 329/516 atomic regions from SNP 98605 to 99205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,041 DEBUG Processing 330/516 atomic regions from SNP 98905 to 99505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,229 DEBUG Processing 331/516 atomic regions from SNP 99205 to 99805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,413 DEBUG Processing 332/516 atomic regions from SNP 99505 to 100105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,608 DEBUG Processing 333/516 atomic regions from SNP 99805 to 100405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,772 DEBUG Subchromosome time: 77.08794275706168, subchromosome SNPs: 104165 2025-01-31 10:00:05,772 DEBUG Estimated BADs: [6.02, 12.04, 2.01, 14.05, 4.01, 0.50, 4.01, 0.67, 2.01, 1.00, 2.01, 1.00, 2.01, 0.67, 2.01, 0.50, 2.01, 1.00, 4.01, 1.00, 0.33, 1.00, 6.02, 2.01] SNP counts: [4161, 3840, 1817, 782, 2918, 1009, 745, 5873, 3618, 9283, 4519, 4496, 4919, 2276, 2404, 4778, 6306, 2064, 13933, 1718, 4794, 2839, 1067, 14006] SNP IDs counts: [4161, 3840, 1817, 782, 2918, 1009, 745, 5873, 3618, 9283, 4519, 4496, 4919, 2276, 2404, 4778, 6306, 2064, 13933, 1718, 4794, 2839, 1067, 14006] Critical gap: 414097bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.08Mbp], 5.36Mbp, 7.50Mbp, 8.70Mbp, 9.11Mbp, 10.98Mbp, 11.60Mbp, 12.02Mbp, 15.47Mbp, 17.41Mbp, 22.69Mbp, 25.12Mbp, 27.59Mbp, 30.22Mbp, 31.48Mbp, 32.80Mbp, 35.67Mbp, 39.06Mbp, 40.48Mbp, 47.90Mbp, 48.82Mbp, 51.65Mbp, 53.25Mbp, 53.82Mbp, 61.43Mbp] 2025-01-31 10:00:05,772 DEBUG chr19 time: 77.08841113303788 s 2025-01-31 10:00:05,791 DEBUG Processing 334/516 atomic regions from SNP 100105 to 100705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:05,841 DEBUG chr19: Fitting background model for 24 segments 2025-01-31 10:00:05,978 DEBUG Processing 335/516 atomic regions from SNP 100405 to 101005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,165 DEBUG Processing 336/516 atomic regions from SNP 100705 to 101305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,353 DEBUG Processing 337/516 atomic regions from SNP 101005 to 101605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,567 DEBUG Processing 338/516 atomic regions from SNP 101305 to 101905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:06,797 DEBUG Processing 339/516 atomic regions from SNP 101605 to 102205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,025 DEBUG Processing 340/516 atomic regions from SNP 101905 to 102505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,235 DEBUG Processing 341/516 atomic regions from SNP 102205 to 102805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,440 DEBUG Processing 342/516 atomic regions from SNP 102505 to 103105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,652 DEBUG Processing 343/516 atomic regions from SNP 102805 to 103405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:07,869 DEBUG Processing 344/516 atomic regions from SNP 103105 to 103705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,096 DEBUG Processing 345/516 atomic regions from SNP 103405 to 104005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,328 DEBUG Processing 346/516 atomic regions from SNP 103705 to 104305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,528 DEBUG Processing 347/516 atomic regions from SNP 104005 to 104605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,725 DEBUG Processing 348/516 atomic regions from SNP 104305 to 104905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:08,925 DEBUG Processing 349/516 atomic regions from SNP 104605 to 105205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,119 DEBUG Processing 350/516 atomic regions from SNP 104905 to 105505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,323 DEBUG Processing 351/516 atomic regions from SNP 105205 to 105805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,502 DEBUG Processing 352/516 atomic regions from SNP 105505 to 106105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,686 DEBUG Processing 353/516 atomic regions from SNP 105805 to 106405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:09,892 DEBUG Processing 354/516 atomic regions from SNP 106105 to 106705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,096 DEBUG Processing 355/516 atomic regions from SNP 106405 to 107005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,282 DEBUG Processing 356/516 atomic regions from SNP 106705 to 107305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,482 DEBUG Processing 357/516 atomic regions from SNP 107005 to 107605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,691 DEBUG Processing 358/516 atomic regions from SNP 107305 to 107905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:10,883 DEBUG Processing 359/516 atomic regions from SNP 107605 to 108205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,053 DEBUG Processing 360/516 atomic regions from SNP 107905 to 108505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,224 DEBUG Processing 361/516 atomic regions from SNP 108205 to 108805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,398 DEBUG Processing 362/516 atomic regions from SNP 108505 to 109105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,601 DEBUG Processing 363/516 atomic regions from SNP 108805 to 109405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,782 DEBUG Processing 364/516 atomic regions from SNP 109105 to 109705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:11,958 DEBUG Processing 365/516 atomic regions from SNP 109405 to 110005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,133 DEBUG Processing 366/516 atomic regions from SNP 109705 to 110305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,308 DEBUG Processing 367/516 atomic regions from SNP 110005 to 110605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,483 DEBUG Processing 368/516 atomic regions from SNP 110305 to 110905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,662 DEBUG Processing 369/516 atomic regions from SNP 110605 to 111205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:12,839 DEBUG Processing 370/516 atomic regions from SNP 110905 to 111505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,018 DEBUG Processing 371/516 atomic regions from SNP 111205 to 111805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,193 DEBUG Processing 372/516 atomic regions from SNP 111505 to 112105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,373 DEBUG Processing 373/516 atomic regions from SNP 111805 to 112405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,550 DEBUG Processing 374/516 atomic regions from SNP 112105 to 112705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,725 DEBUG Processing 375/516 atomic regions from SNP 112405 to 113005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:13,899 DEBUG Processing 376/516 atomic regions from SNP 112705 to 113305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,076 DEBUG Processing 377/516 atomic regions from SNP 113005 to 113605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,253 DEBUG Processing 378/516 atomic regions from SNP 113305 to 113905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,427 DEBUG Processing 379/516 atomic regions from SNP 113605 to 114205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,629 DEBUG Processing 380/516 atomic regions from SNP 113905 to 114505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:14,832 DEBUG Processing 381/516 atomic regions from SNP 114205 to 114805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,042 DEBUG Processing 382/516 atomic regions from SNP 114505 to 115105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,246 DEBUG Processing 383/516 atomic regions from SNP 114805 to 115405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,432 DEBUG Processing 384/516 atomic regions from SNP 115105 to 115705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,604 DEBUG Processing 385/516 atomic regions from SNP 115405 to 116005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,785 DEBUG Processing 386/516 atomic regions from SNP 115705 to 116305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:15,975 DEBUG Processing 387/516 atomic regions from SNP 116005 to 116605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,149 DEBUG Processing 388/516 atomic regions from SNP 116305 to 116905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,323 DEBUG Processing 389/516 atomic regions from SNP 116605 to 117205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,500 DEBUG Processing 390/516 atomic regions from SNP 116905 to 117505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,672 DEBUG Processing 391/516 atomic regions from SNP 117205 to 117805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:16,845 DEBUG Processing 392/516 atomic regions from SNP 117505 to 118105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,019 DEBUG Processing 393/516 atomic regions from SNP 117805 to 118405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,192 DEBUG Processing 394/516 atomic regions from SNP 118105 to 118705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,368 DEBUG Processing 395/516 atomic regions from SNP 118405 to 119005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,542 DEBUG Processing 396/516 atomic regions from SNP 118705 to 119305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,715 DEBUG Processing 397/516 atomic regions from SNP 119005 to 119605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:17,888 DEBUG Processing 398/516 atomic regions from SNP 119305 to 119905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,063 DEBUG Processing 399/516 atomic regions from SNP 119605 to 120205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,260 DEBUG Processing 400/516 atomic regions from SNP 119905 to 120505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,457 DEBUG Processing 401/516 atomic regions from SNP 120205 to 120805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,633 DEBUG Processing 402/516 atomic regions from SNP 120505 to 121105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,806 DEBUG Processing 403/516 atomic regions from SNP 120805 to 121405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:18,978 DEBUG Processing 404/516 atomic regions from SNP 121105 to 121705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,156 DEBUG Processing 405/516 atomic regions from SNP 121405 to 122005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,332 DEBUG Processing 406/516 atomic regions from SNP 121705 to 122305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,510 DEBUG Processing 407/516 atomic regions from SNP 122005 to 122605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,688 DEBUG Processing 408/516 atomic regions from SNP 122305 to 122905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:19,862 DEBUG Processing 409/516 atomic regions from SNP 122605 to 123205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,048 DEBUG Processing 410/516 atomic regions from SNP 122905 to 123505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,221 DEBUG Processing 411/516 atomic regions from SNP 123205 to 123805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,395 DEBUG Processing 412/516 atomic regions from SNP 123505 to 124105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,570 DEBUG Processing 413/516 atomic regions from SNP 123805 to 124405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,743 DEBUG Processing 414/516 atomic regions from SNP 124105 to 124705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:20,916 DEBUG Processing 415/516 atomic regions from SNP 124405 to 125005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,089 DEBUG Processing 416/516 atomic regions from SNP 124705 to 125305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,261 DEBUG Processing 417/516 atomic regions from SNP 125005 to 125605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,439 DEBUG Processing 418/516 atomic regions from SNP 125305 to 125905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,634 DEBUG Processing 419/516 atomic regions from SNP 125605 to 126205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,826 DEBUG Processing 420/516 atomic regions from SNP 125905 to 126505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:21,998 DEBUG Processing 421/516 atomic regions from SNP 126205 to 126805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,169 DEBUG Processing 422/516 atomic regions from SNP 126505 to 127105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,338 DEBUG Processing 423/516 atomic regions from SNP 126805 to 127405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,513 DEBUG Processing 424/516 atomic regions from SNP 127105 to 127705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,705 DEBUG Processing 425/516 atomic regions from SNP 127405 to 128005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:22,896 DEBUG Processing 426/516 atomic regions from SNP 127705 to 128305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,090 DEBUG Processing 427/516 atomic regions from SNP 128005 to 128605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,261 DEBUG Processing 428/516 atomic regions from SNP 128305 to 128905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,442 DEBUG Processing 429/516 atomic regions from SNP 128605 to 129205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,632 DEBUG Processing 430/516 atomic regions from SNP 128905 to 129505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,807 DEBUG Processing 431/516 atomic regions from SNP 129205 to 129805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:23,975 DEBUG Processing 432/516 atomic regions from SNP 129505 to 130105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,162 DEBUG Processing 433/516 atomic regions from SNP 129805 to 130405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,350 DEBUG Processing 434/516 atomic regions from SNP 130105 to 130705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,539 DEBUG Processing 435/516 atomic regions from SNP 130405 to 131005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,709 DEBUG Processing 436/516 atomic regions from SNP 130705 to 131305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:24,886 DEBUG Processing 437/516 atomic regions from SNP 131005 to 131605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,057 DEBUG Processing 438/516 atomic regions from SNP 131305 to 131905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,259 DEBUG Processing 439/516 atomic regions from SNP 131605 to 132205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,449 DEBUG Processing 440/516 atomic regions from SNP 131905 to 132505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,622 DEBUG Processing 441/516 atomic regions from SNP 132205 to 132805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,795 DEBUG Processing 442/516 atomic regions from SNP 132505 to 133105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:25,989 DEBUG Processing 443/516 atomic regions from SNP 132805 to 133405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,194 DEBUG Processing 444/516 atomic regions from SNP 133105 to 133705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,378 DEBUG Processing 445/516 atomic regions from SNP 133405 to 134005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,569 DEBUG Processing 446/516 atomic regions from SNP 133705 to 134305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,742 DEBUG Processing 447/516 atomic regions from SNP 134005 to 134605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:26,914 DEBUG Processing 448/516 atomic regions from SNP 134305 to 134905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,086 DEBUG Processing 449/516 atomic regions from SNP 134605 to 135205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,258 DEBUG Processing 450/516 atomic regions from SNP 134905 to 135505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,430 DEBUG Processing 451/516 atomic regions from SNP 135205 to 135805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,603 DEBUG Processing 452/516 atomic regions from SNP 135505 to 136105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,776 DEBUG Processing 453/516 atomic regions from SNP 135805 to 136405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:27,946 DEBUG Processing 454/516 atomic regions from SNP 136105 to 136705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,121 DEBUG Processing 455/516 atomic regions from SNP 136405 to 137005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,290 DEBUG Processing 456/516 atomic regions from SNP 136705 to 137305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,462 DEBUG Processing 457/516 atomic regions from SNP 137005 to 137605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,668 DEBUG Processing 458/516 atomic regions from SNP 137305 to 137905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:28,860 DEBUG Processing 459/516 atomic regions from SNP 137605 to 138205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,041 DEBUG Processing 460/516 atomic regions from SNP 137905 to 138505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,218 DEBUG Processing 461/516 atomic regions from SNP 138205 to 138805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,389 DEBUG Processing 462/516 atomic regions from SNP 138505 to 139105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,559 DEBUG Processing 463/516 atomic regions from SNP 138805 to 139405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,731 DEBUG Processing 464/516 atomic regions from SNP 139105 to 139705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:29,903 DEBUG Processing 465/516 atomic regions from SNP 139405 to 140005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,090 DEBUG Processing 466/516 atomic regions from SNP 139705 to 140305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,261 DEBUG Processing 467/516 atomic regions from SNP 140005 to 140605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,430 DEBUG Processing 468/516 atomic regions from SNP 140305 to 140905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,603 DEBUG Processing 469/516 atomic regions from SNP 140605 to 141205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,775 DEBUG Processing 470/516 atomic regions from SNP 140905 to 141505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:30,945 DEBUG Processing 471/516 atomic regions from SNP 141205 to 141805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,122 DEBUG Processing 472/516 atomic regions from SNP 141505 to 142105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,316 DEBUG Processing 473/516 atomic regions from SNP 141805 to 142405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,504 DEBUG Processing 474/516 atomic regions from SNP 142105 to 142705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,674 DEBUG Processing 475/516 atomic regions from SNP 142405 to 143005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:31,844 DEBUG Processing 476/516 atomic regions from SNP 142705 to 143305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,016 DEBUG Processing 477/516 atomic regions from SNP 143005 to 143605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,199 DEBUG Processing 478/516 atomic regions from SNP 143305 to 143905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,369 DEBUG Processing 479/516 atomic regions from SNP 143605 to 144205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,536 DEBUG Processing 480/516 atomic regions from SNP 143905 to 144505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,709 DEBUG Processing 481/516 atomic regions from SNP 144205 to 144805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:32,884 DEBUG Processing 482/516 atomic regions from SNP 144505 to 145105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,050 DEBUG Processing 483/516 atomic regions from SNP 144805 to 145405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,217 DEBUG Processing 484/516 atomic regions from SNP 145105 to 145705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,396 DEBUG Processing 485/516 atomic regions from SNP 145405 to 146005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,570 DEBUG Processing 486/516 atomic regions from SNP 145705 to 146305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,759 DEBUG Processing 487/516 atomic regions from SNP 146005 to 146605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:33,926 DEBUG Processing 488/516 atomic regions from SNP 146305 to 146905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,097 DEBUG Processing 489/516 atomic regions from SNP 146605 to 147205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,268 DEBUG Processing 490/516 atomic regions from SNP 146905 to 147505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,439 DEBUG Processing 491/516 atomic regions from SNP 147205 to 147805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,610 DEBUG Processing 492/516 atomic regions from SNP 147505 to 148105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,780 DEBUG Processing 493/516 atomic regions from SNP 147805 to 148405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:34,949 DEBUG Processing 494/516 atomic regions from SNP 148105 to 148705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,116 DEBUG Processing 495/516 atomic regions from SNP 148405 to 149005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,285 DEBUG Processing 496/516 atomic regions from SNP 148705 to 149305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,456 DEBUG Processing 497/516 atomic regions from SNP 149005 to 149605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,625 DEBUG Processing 498/516 atomic regions from SNP 149305 to 149905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,795 DEBUG Processing 499/516 atomic regions from SNP 149605 to 150205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:35,965 DEBUG Processing 500/516 atomic regions from SNP 149905 to 150505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,134 DEBUG Processing 501/516 atomic regions from SNP 150205 to 150805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,304 DEBUG Processing 502/516 atomic regions from SNP 150505 to 151105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,470 DEBUG Processing 503/516 atomic regions from SNP 150805 to 151405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,636 DEBUG Processing 504/516 atomic regions from SNP 151105 to 151705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,804 DEBUG Processing 505/516 atomic regions from SNP 151405 to 152005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:36,971 DEBUG Processing 506/516 atomic regions from SNP 151705 to 152305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,139 DEBUG Processing 507/516 atomic regions from SNP 152005 to 152605 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,305 DEBUG Processing 508/516 atomic regions from SNP 152305 to 152905 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,474 DEBUG Processing 509/516 atomic regions from SNP 152605 to 153205 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,643 DEBUG Processing 510/516 atomic regions from SNP 152905 to 153505 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,811 DEBUG Processing 511/516 atomic regions from SNP 153205 to 153805 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:37,979 DEBUG Processing 512/516 atomic regions from SNP 153505 to 154105 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,148 DEBUG Processing 513/516 atomic regions from SNP 153805 to 154405 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,316 DEBUG Processing 514/516 atomic regions from SNP 154105 to 154705 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,483 DEBUG Processing 515/516 atomic regions from SNP 154405 to 155005 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,655 DEBUG Processing 516/516 atomic regions from SNP 154705 to 155305 for chr18 (subchromosome 1 of 1). 2025-01-31 10:00:38,761 DEBUG Unique SNPs positions in subchromosome 1: 155306 2025-01-31 10:00:40,369 DEBUG Subchromosome time: 120.80574294598773, subchromosome SNPs: 155306 2025-01-31 10:00:40,369 DEBUG Estimated BADs: [1.62, 3.23, 0.54, 1.62, 0.40, 1.62, 0.40, 3.23, 6.46, 3.23, 0.81, 4.85, 0.81, 1.62, 6.46, 1.62, 4.85, 1.62, 9.69, 0.81, 3.23, 0.81] SNP counts: [3205, 5322, 2461, 11081, 6346, 12001, 9308, 4873, 4731, 4847, 12447, 1589, 4072, 19032, 2791, 9743, 1863, 4188, 341, 5377, 20311, 9377] SNP IDs counts: [3205, 5322, 2461, 11081, 6346, 12001, 9308, 4873, 4731, 4847, 12447, 1589, 4072, 19032, 2791, 9743, 1863, 4188, 341, 5377, 20311, 9377] Critical gap: 510346bp Boundaries positions (location[deletion length (if any)]): [0.00Mbp[3.00Mbp], 4.92Mbp, 7.96Mbp, 9.45Mbp, 15.61Mbp, 19.44Mbp, 26.18Mbp, 31.61Mbp, 34.32Mbp, 36.80Mbp, 39.47Mbp, 46.52Mbp, 47.37Mbp, 49.75Mbp, 60.48Mbp, 61.93Mbp, 67.20Mbp, 68.19Mbp, 70.47Mbp, 70.66Mbp, 73.75Mbp, 84.85Mbp, 90.70Mbp] 2025-01-31 10:00:40,369 DEBUG chr18 time: 120.80619705398567 s 2025-01-31 10:00:40,453 DEBUG chr18: Fitting background model for 22 segments 2025-01-31 10:01:06,566 DEBUG Results of fit_background_model emitted. 2025-01-31 10:01:06,710 INFO Signal to noise fit: SPOT=0.42±0.19 2025-01-31 10:01:06,717 INFO Found 1 outlier SPOT score segments at iteration 1. Refitting with approximated signal/noise constraint. 2025-01-31 10:01:06,760 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:01:06,761 DEBUG Using 6 CPUs to refit_outlier_segments 2025-01-31 10:01:11,764 DEBUG chr14: Fitting background model for 1 segments 2025-01-31 10:01:12,068 DEBUG Results of refit_outlier_segments emitted. 2025-01-31 10:01:12,142 INFO Signal to noise fit: SPOT=0.42±0.19 2025-01-31 10:01:12,148 INFO Final SPOT score: 0.42±0.19. Refitted 1 segments. 2025-01-31 10:01:12,198 INFO Estimating per-bp parameters of background model 2025-01-31 10:01:12,206 DEBUG Chromosome chrY not found in input data. Skipping. 2025-01-31 10:01:12,206 DEBUG Using 6 CPUs to fit_per_bp_model 2025-01-31 10:01:21,692 DEBUG chr5:3002500-5899501: Successfully fit background model for 2,542,529 bp. Use segment r for 0 bp 2025-01-31 10:01:22,034 DEBUG chr4:3050000-6885751: Successfully fit background model for 3,197,282 bp. Use segment r for 0 bp 2025-01-31 10:01:22,238 DEBUG chr4:6885751-8642251: Successfully fit background model for 1,523,875 bp. Use segment r for 0 bp 2025-01-31 10:01:22,404 DEBUG chr3:3000000-8897251: Successfully fit background model for 5,105,036 bp. Use segment r for 0 bp 2025-01-31 10:01:22,558 DEBUG chr3:8897251-10267251: Successfully fit background model for 1,261,209 bp. Use segment r for 0 bp 2025-01-31 10:01:22,686 DEBUG chr2:3051000-7563251: Successfully fit background model for 4,246,065 bp. Use segment r for 0 bp 2025-01-31 10:01:22,869 DEBUG chr2:7563251-9007751: Successfully fit background model for 1,274,031 bp. Use segment r for 0 bp 2025-01-31 10:01:23,188 DEBUG chr4:8642251-16168751: Successfully fit background model for 6,793,885 bp. Use segment r for 0 bp 2025-01-31 10:01:23,510 DEBUG chr4:16168751-19219251: Successfully fit background model for 2,622,178 bp. Use segment r for 0 bp 2025-01-31 10:01:23,607 DEBUG chr2:9007751-15393251: Successfully fit background model for 5,835,509 bp. Use segment r for 0 bp 2025-01-31 10:01:23,639 DEBUG chrX:3055000-7315751: Successfully fit background model for 1,777,127 bp. Use segment r for 835 bp 2025-01-31 10:01:23,816 DEBUG chr4:19219251-21707251: Successfully fit background model for 2,134,389 bp. Use segment r for 0 bp 2025-01-31 10:01:23,821 DEBUG chr1:3000500-9540001: Successfully fit background model for 5,696,417 bp. Use segment r for 0 bp 2025-01-31 10:01:23,884 DEBUG chr3:10267251-19161751: Successfully fit background model for 7,482,903 bp. Use segment r for 0 bp 2025-01-31 10:01:23,891 DEBUG chr1:9540001-9981501: Successfully fit background model for 426,118 bp. Use segment r for 0 bp 2025-01-31 10:01:23,915 DEBUG chr4:21707251-22625501: Successfully fit background model for 855,964 bp. Use segment r for 0 bp 2025-01-31 10:01:23,918 DEBUG chrX:7315751-9745251: Successfully fit background model for 1,977,257 bp. Use segment r for 0 bp 2025-01-31 10:01:23,921 DEBUG chr2:15393251-18025751: Successfully fit background model for 2,347,358 bp. Use segment r for 0 bp 2025-01-31 10:01:23,996 DEBUG chr3:19161751-20020751: Successfully fit background model for 787,315 bp. Use segment r for 0 bp 2025-01-31 10:01:24,166 DEBUG chrX:9745251-11973751: Successfully fit background model for 2,067,739 bp. Use segment r for 0 bp 2025-01-31 10:01:24,396 DEBUG chrX:11973751-13882751: Successfully fit background model for 1,798,557 bp. Use segment r for 0 bp 2025-01-31 10:01:24,747 DEBUG chr1:9981501-16615751: Successfully fit background model for 5,977,743 bp. Use segment r for 0 bp 2025-01-31 10:01:24,879 DEBUG chr2:18025751-24918751: Successfully fit background model for 6,143,104 bp. Use segment r for 0 bp 2025-01-31 10:01:25,182 DEBUG chr3:20020751-28295751: Successfully fit background model for 7,322,213 bp. Use segment r for 0 bp 2025-01-31 10:01:25,292 DEBUG chr5:5899501-20871251: Successfully fit background model for 11,933,233 bp. Use segment r for 1,487 bp 2025-01-31 10:01:25,629 DEBUG chr5:20871251-23401251: Successfully fit background model for 2,309,258 bp. Use segment r for 0 bp 2025-01-31 10:01:25,644 DEBUG chr4:22625501-32655751: Successfully fit background model for 9,009,704 bp. Use segment r for 0 bp 2025-01-31 10:01:25,861 DEBUG chr5:23401251-25547501: Successfully fit background model for 2,045,032 bp. Use segment r for 0 bp 2025-01-31 10:01:25,888 DEBUG chr4:32655751-34825251: Successfully fit background model for 2,038,811 bp. Use segment r for 0 bp 2025-01-31 10:01:26,360 DEBUG chr3:28295751-38141251: Successfully fit background model for 9,078,193 bp. Use segment r for 0 bp 2025-01-31 10:01:26,432 DEBUG chr5:25547501-30516251: Successfully fit background model for 4,416,644 bp. Use segment r for 0 bp 2025-01-31 10:01:26,534 DEBUG chr5:30516251-31242751: Successfully fit background model for 705,206 bp. Use segment r for 0 bp 2025-01-31 10:01:26,560 DEBUG chr4:34825251-40134751: Successfully fit background model for 4,721,068 bp. Use segment r for 0 bp 2025-01-31 10:01:26,576 DEBUG chr3:38141251-40047751: Successfully fit background model for 1,754,163 bp. Use segment r for 0 bp 2025-01-31 10:01:26,627 DEBUG chr2:24918751-36238251: Successfully fit background model for 10,998,756 bp. Use segment r for 0 bp 2025-01-31 10:01:26,755 DEBUG chr2:36238251-37049751: Successfully fit background model for 676,821 bp. Use segment r for 0 bp 2025-01-31 10:01:26,756 DEBUG chr4:40134751-41857501: Successfully fit background model for 1,562,355 bp. Use segment r for 0 bp 2025-01-31 10:01:26,855 DEBUG chr3:40047751-41833501: Successfully fit background model for 1,575,408 bp. Use segment r for 0 bp 2025-01-31 10:01:27,034 DEBUG chr2:37049751-39373251: Successfully fit background model for 2,174,238 bp. Use segment r for 0 bp 2025-01-31 10:01:27,196 DEBUG chr1:16615751-30769751: Successfully fit background model for 12,636,606 bp. Use segment r for 0 bp 2025-01-31 10:01:27,270 DEBUG chr1:30769751-30998501: Successfully fit background model for 205,796 bp. Use segment r for 0 bp 2025-01-31 10:01:27,435 DEBUG chr4:42706000-47170251: Successfully fit background model for 4,211,841 bp. Use segment r for 0 bp 2025-01-31 10:01:27,710 DEBUG chr1:30998501-33469251: Successfully fit background model for 2,164,090 bp. Use segment r for 0 bp 2025-01-31 10:01:27,848 DEBUG chr4:47170251-49699251: Successfully fit background model for 2,355,737 bp. Use segment r for 0 bp 2025-01-31 10:01:27,855 DEBUG chr2:39373251-44225751: Successfully fit background model for 4,426,780 bp. Use segment r for 0 bp 2025-01-31 10:01:28,031 DEBUG chr2:44225751-45511751: Successfully fit background model for 1,228,692 bp. Use segment r for 0 bp 2025-01-31 10:01:28,264 DEBUG chr5:31242751-39064501: Successfully fit background model for 7,438,489 bp. Use segment r for 0 bp 2025-01-31 10:01:28,310 DEBUG chr4:49699251-52977251: Successfully fit background model for 2,905,772 bp. Use segment r for 0 bp 2025-01-31 10:01:28,430 DEBUG chr2:45511751-47902001: Successfully fit background model for 2,161,688 bp. Use segment r for 0 bp 2025-01-31 10:01:28,676 DEBUG chr5:39064501-42672751: Successfully fit background model for 3,236,852 bp. Use segment r for 0 bp 2025-01-31 10:01:28,846 DEBUG chrX:13882751-26910501: Successfully fit background model for 9,358,824 bp. Use segment r for 840 bp 2025-01-31 10:01:28,891 DEBUG chr1:33469251-39399251: Successfully fit background model for 5,657,544 bp. Use segment r for 0 bp 2025-01-31 10:01:29,023 DEBUG chr5:42672751-45943751: Successfully fit background model for 2,967,771 bp. Use segment r for 0 bp 2025-01-31 10:01:29,085 DEBUG chr3:41833501-50658751: Successfully fit background model for 7,826,008 bp. Use segment r for 0 bp 2025-01-31 10:01:29,180 DEBUG chr3:50658751-51188751: Successfully fit background model for 449,933 bp. Use segment r for 0 bp 2025-01-31 10:01:29,190 DEBUG chr2:47902001-53203751: Successfully fit background model for 5,021,429 bp. Use segment r for 0 bp 2025-01-31 10:01:29,276 DEBUG chr3:51188751-51664251: Successfully fit background model for 455,293 bp. Use segment r for 0 bp 2025-01-31 10:01:29,445 DEBUG chr1:39399251-44101251: Successfully fit background model for 4,499,258 bp. Use segment r for 0 bp 2025-01-31 10:01:29,490 DEBUG chr1:44101251-44165251: Successfully fit background model for 62,846 bp. Use segment r for 0 bp 2025-01-31 10:01:29,672 DEBUG chr2:53203751-57107751: Successfully fit background model for 3,344,520 bp. Use segment r for 0 bp 2025-01-31 10:01:29,741 DEBUG chr2:57107751-57493751: Successfully fit background model for 359,720 bp. Use segment r for 0 bp 2025-01-31 10:01:29,932 DEBUG chr5:45943751-51010751: Successfully fit background model for 4,631,921 bp. Use segment r for 0 bp 2025-01-31 10:01:30,365 DEBUG chr5:51010751-54430251: Successfully fit background model for 3,278,537 bp. Use segment r for 0 bp 2025-01-31 10:01:31,413 DEBUG chrX:31132500-39315751: Successfully fit background model for 3,148,140 bp. Use segment r for 5,237 bp 2025-01-31 10:01:31,430 DEBUG chr1:44165251-52098251: Successfully fit background model for 6,900,320 bp. Use segment r for 0 bp 2025-01-31 10:01:31,951 DEBUG chr5:54430251-63388251: Successfully fit background model for 7,918,504 bp. Use segment r for 0 bp 2025-01-31 10:01:32,151 DEBUG chr1:52098251-58387751: Successfully fit background model for 5,798,865 bp. Use segment r for 0 bp 2025-01-31 10:01:32,352 DEBUG chr1:58387751-59922251: Successfully fit background model for 1,446,093 bp. Use segment r for 0 bp 2025-01-31 10:01:32,505 DEBUG chr4:52977251-64019251: Successfully fit background model for 8,765,223 bp. Use segment r for 8,069 bp 2025-01-31 10:01:32,548 DEBUG chr5:63388251-68472251: Successfully fit background model for 4,797,926 bp. Use segment r for 0 bp 2025-01-31 10:01:32,657 DEBUG chrX:39315751-48123751: Successfully fit background model for 7,640,081 bp. Use segment r for 0 bp 2025-01-31 10:01:32,735 DEBUG chr1:59922251-62694751: Successfully fit background model for 2,590,814 bp. Use segment r for 0 bp 2025-01-31 10:01:32,821 DEBUG chr2:57493751-69815251: Successfully fit background model for 11,471,696 bp. Use segment r for 0 bp 2025-01-31 10:01:32,889 DEBUG chr5:68472251-71701751: Successfully fit background model for 2,846,316 bp. Use segment r for 0 bp 2025-01-31 10:01:33,069 DEBUG chr1:62694751-65212251: Successfully fit background model for 2,367,898 bp. Use segment r for 0 bp 2025-01-31 10:01:33,240 DEBUG chr2:69815251-73489751: Successfully fit background model for 3,572,004 bp. Use segment r for 0 bp 2025-01-31 10:01:33,307 DEBUG chrX:48123751-54464501: Successfully fit background model for 5,374,044 bp. Use segment r for 0 bp 2025-01-31 10:01:33,986 DEBUG chr5:71701751-77913751: Successfully fit background model for 5,879,316 bp. Use segment r for 0 bp 2025-01-31 10:01:34,162 DEBUG chr1:65212251-72224251: Successfully fit background model for 6,465,539 bp. Use segment r for 0 bp 2025-01-31 10:01:34,189 DEBUG chr1:72224251-72313751: Successfully fit background model for 86,640 bp. Use segment r for 0 bp 2025-01-31 10:01:34,445 DEBUG chr1:72313751-74235251: Successfully fit background model for 1,819,865 bp. Use segment r for 0 bp 2025-01-31 10:01:34,487 DEBUG chr3:51664251-70877251: Successfully fit background model for 17,401,144 bp. Use segment r for 0 bp 2025-01-31 10:01:34,569 DEBUG chr2:73489751-80941251: Successfully fit background model for 7,062,509 bp. Use segment r for 0 bp 2025-01-31 10:01:34,570 DEBUG chr1:74235251-75342251: Successfully fit background model for 1,011,290 bp. Use segment r for 0 bp 2025-01-31 10:01:34,589 DEBUG chr5:77913751-83761751: Successfully fit background model for 5,231,526 bp. Use segment r for 0 bp 2025-01-31 10:01:34,798 DEBUG chr2:80941251-82958251: Successfully fit background model for 1,761,647 bp. Use segment r for 0 bp 2025-01-31 10:01:35,005 DEBUG chr2:82958251-84648251: Successfully fit background model for 1,385,926 bp. Use segment r for 0 bp 2025-01-31 10:01:35,124 DEBUG chr2:84648251-85327501: Successfully fit background model for 640,432 bp. Use segment r for 0 bp 2025-01-31 10:01:35,142 DEBUG chr5:83761751-88527251: Successfully fit background model for 4,205,838 bp. Use segment r for 0 bp 2025-01-31 10:01:35,939 DEBUG chr2:85327501-89384251: Successfully fit background model for 3,547,152 bp. Use segment r for 0 bp 2025-01-31 10:01:36,150 DEBUG chr2:89384251-90845251: Successfully fit background model for 1,116,473 bp. Use segment r for 0 bp 2025-01-31 10:01:36,957 DEBUG chr2:90845251-94794751: Successfully fit background model for 3,834,566 bp. Use segment r for 0 bp 2025-01-31 10:01:37,265 DEBUG chr3:70877251-79451251: Successfully fit background model for 7,637,761 bp. Use segment r for 0 bp 2025-01-31 10:01:37,878 DEBUG chr3:79451251-84007751: Successfully fit background model for 4,199,449 bp. Use segment r for 0 bp 2025-01-31 10:01:38,277 DEBUG chr2:94794751-101095751: Successfully fit background model for 5,246,712 bp. Use segment r for 0 bp 2025-01-31 10:01:38,333 DEBUG chr1:75342251-84837751: Successfully fit background model for 8,762,888 bp. Use segment r for 0 bp 2025-01-31 10:01:38,343 DEBUG chr3:84007751-87721751: Successfully fit background model for 3,536,496 bp. Use segment r for 0 bp 2025-01-31 10:01:38,674 DEBUG chr3:87721751-90392751: Successfully fit background model for 2,535,847 bp. Use segment r for 0 bp 2025-01-31 10:01:38,846 DEBUG chrX:55253000-72981751: Successfully fit background model for 15,032,616 bp. Use segment r for 0 bp 2025-01-31 10:01:39,136 DEBUG chr2:101095751-107975251: Successfully fit background model for 6,514,194 bp. Use segment r for 0 bp 2025-01-31 10:01:39,175 DEBUG chr3:90392751-94441251: Successfully fit background model for 3,136,923 bp. Use segment r for 0 bp 2025-01-31 10:01:39,216 DEBUG chrX:72981751-75672751: Successfully fit background model for 2,092,117 bp. Use segment r for 0 bp 2025-01-31 10:01:39,429 DEBUG chr3:94441251-96764751: Successfully fit background model for 2,122,706 bp. Use segment r for 0 bp 2025-01-31 10:01:39,433 DEBUG chrX:75672751-77431251: Successfully fit background model for 1,422,596 bp. Use segment r for 0 bp 2025-01-31 10:01:39,668 DEBUG chr4:64019251-80976251: Successfully fit background model for 15,016,540 bp. Use segment r for 99 bp 2025-01-31 10:01:39,672 DEBUG chr2:107975251-112239501: Successfully fit background model for 3,740,053 bp. Use segment r for 0 bp 2025-01-31 10:01:39,859 DEBUG chr1:84837751-93838251: Successfully fit background model for 8,163,446 bp. Use segment r for 0 bp 2025-01-31 10:01:39,908 DEBUG chr2:112239501-114690751: Successfully fit background model for 2,269,184 bp. Use segment r for 0 bp 2025-01-31 10:01:40,229 DEBUG chr1:93838251-97628751: Successfully fit background model for 3,206,680 bp. Use segment r for 0 bp 2025-01-31 10:01:40,260 DEBUG chr2:114690751-118478251: Successfully fit background model for 3,585,511 bp. Use segment r for 0 bp 2025-01-31 10:01:40,338 DEBUG chr1:97628751-98637751: Successfully fit background model for 892,992 bp. Use segment r for 0 bp 2025-01-31 10:01:40,527 DEBUG chr4:80976251-89693751: Successfully fit background model for 7,961,002 bp. Use segment r for 0 bp 2025-01-31 10:01:40,628 DEBUG chr5:88527251-103653251: Successfully fit background model for 12,056,789 bp. Use segment r for 4,679 bp 2025-01-31 10:01:40,663 DEBUG chr2:118478251-122381751: Successfully fit background model for 3,755,280 bp. Use segment r for 0 bp 2025-01-31 10:01:40,674 DEBUG chr5:103653251-103828251: Successfully fit background model for 173,195 bp. Use segment r for 0 bp 2025-01-31 10:01:40,738 DEBUG chr3:96764751-108044251: Successfully fit background model for 10,434,369 bp. Use segment r for 0 bp 2025-01-31 10:01:40,813 DEBUG chr3:108044251-108549251: Successfully fit background model for 495,369 bp. Use segment r for 0 bp 2025-01-31 10:01:40,838 DEBUG chr4:89693751-92737501: Successfully fit background model for 2,668,364 bp. Use segment r for 0 bp 2025-01-31 10:01:40,838 DEBUG chr2:122381751-124041751: Successfully fit background model for 1,482,812 bp. Use segment r for 0 bp 2025-01-31 10:01:40,973 DEBUG chr1:98637751-104468251: Successfully fit background model for 5,107,399 bp. Use segment r for 0 bp 2025-01-31 10:01:41,009 DEBUG chr3:108549251-110375751: Successfully fit background model for 1,699,477 bp. Use segment r for 0 bp 2025-01-31 10:01:41,078 DEBUG chrX:77431251-91303251: Successfully fit background model for 12,002,422 bp. Use segment r for 0 bp 2025-01-31 10:01:41,135 DEBUG chr2:124041751-127053251: Successfully fit background model for 2,834,803 bp. Use segment r for 0 bp 2025-01-31 10:01:41,251 DEBUG chr4:92737501-96961251: Successfully fit background model for 3,794,419 bp. Use segment r for 0 bp 2025-01-31 10:01:41,337 DEBUG chr1:104468251-108036251: Successfully fit background model for 3,260,584 bp. Use segment r for 0 bp 2025-01-31 10:01:41,474 DEBUG chr3:110375751-114959751: Successfully fit background model for 3,805,690 bp. Use segment r for 0 bp 2025-01-31 10:01:41,543 DEBUG chrX:91303251-95955751: Successfully fit background model for 3,700,436 bp. Use segment r for 0 bp 2025-01-31 10:01:41,679 DEBUG chr2:127053251-132242751: Successfully fit background model for 4,980,676 bp. Use segment r for 0 bp 2025-01-31 10:01:41,718 DEBUG chr3:114959751-117450751: Successfully fit background model for 2,312,083 bp. Use segment r for 0 bp 2025-01-31 10:01:41,874 DEBUG chr5:103828251-113727251: Successfully fit background model for 9,128,573 bp. Use segment r for 0 bp 2025-01-31 10:01:41,877 DEBUG chrX:95955751-99350251: Successfully fit background model for 2,949,286 bp. Use segment r for 0 bp 2025-01-31 10:01:41,994 DEBUG chr3:117450751-120288751: Successfully fit background model for 2,659,719 bp. Use segment r for 0 bp 2025-01-31 10:01:42,059 DEBUG chr2:132242751-136233251: Successfully fit background model for 3,752,459 bp. Use segment r for 0 bp 2025-01-31 10:01:42,083 DEBUG chr5:113727251-115603751: Successfully fit background model for 1,825,849 bp. Use segment r for 0 bp 2025-01-31 10:01:42,288 DEBUG chr4:96961251-106740751: Successfully fit background model for 9,196,033 bp. Use segment r for 0 bp 2025-01-31 10:01:42,390 DEBUG chr3:120288751-124389251: Successfully fit background model for 3,839,877 bp. Use segment r for 0 bp 2025-01-31 10:01:42,494 DEBUG chr3:124389251-125405251: Successfully fit background model for 932,956 bp. Use segment r for 0 bp 2025-01-31 10:01:42,502 DEBUG chr1:108036251-118288251: Successfully fit background model for 8,921,614 bp. Use segment r for 0 bp 2025-01-31 10:01:42,540 DEBUG chr5:115603751-120079001: Successfully fit background model for 4,381,341 bp. Use segment r for 0 bp 2025-01-31 10:01:42,568 DEBUG chrX:99350251-106070251: Successfully fit background model for 6,021,511 bp. Use segment r for 0 bp 2025-01-31 10:01:42,634 DEBUG chr4:106740751-110293751: Successfully fit background model for 3,375,554 bp. Use segment r for 0 bp 2025-01-31 10:01:42,693 DEBUG chr1:118288251-120111751: Successfully fit background model for 1,771,808 bp. Use segment r for 0 bp 2025-01-31 10:01:42,889 DEBUG chr2:136233251-143832751: Successfully fit background model for 7,027,558 bp. Use segment r for 0 bp 2025-01-31 10:01:43,020 DEBUG chrX:106070251-110794751: Successfully fit background model for 4,035,923 bp. Use segment r for 0 bp 2025-01-31 10:01:43,039 DEBUG chrX:110794751-110845751: Successfully fit background model for 50,358 bp. Use segment r for 0 bp 2025-01-31 10:01:43,092 DEBUG chr5:120079001-125432751: Successfully fit background model for 5,128,463 bp. Use segment r for 0 bp 2025-01-31 10:01:43,131 DEBUG chr4:110293751-113752001: Successfully fit background model for 3,033,173 bp. Use segment r for 2,192 bp 2025-01-31 10:01:43,270 DEBUG chr4:113752001-114986251: Successfully fit background model for 1,120,796 bp. Use segment r for 0 bp 2025-01-31 10:01:43,499 DEBUG chr5:125432751-129722251: Successfully fit background model for 4,102,390 bp. Use segment r for 0 bp 2025-01-31 10:01:43,558 DEBUG chr5:129722251-130168751: Successfully fit background model for 385,518 bp. Use segment r for 0 bp 2025-01-31 10:01:43,620 DEBUG chr2:143832751-150903751: Successfully fit background model for 6,541,532 bp. Use segment r for 0 bp 2025-01-31 10:01:43,795 DEBUG chr3:125405251-137098251: Successfully fit background model for 10,820,394 bp. Use segment r for 0 bp 2025-01-31 10:01:43,878 DEBUG chr4:114986251-120849751: Successfully fit background model for 5,476,446 bp. Use segment r for 0 bp 2025-01-31 10:01:43,900 DEBUG chr1:120111751-130713751: Successfully fit background model for 9,852,394 bp. Use segment r for 0 bp 2025-01-31 10:01:43,953 DEBUG chr5:130168751-134138751: Successfully fit background model for 3,806,315 bp. Use segment r for 0 bp 2025-01-31 10:01:44,001 DEBUG chr3:137098251-139165251: Successfully fit background model for 1,938,397 bp. Use segment r for 0 bp 2025-01-31 10:01:44,414 DEBUG chr2:150903751-158589251: Successfully fit background model for 7,115,186 bp. Use segment r for 0 bp 2025-01-31 10:01:44,435 DEBUG chr3:139165251-142080751: Successfully fit background model for 2,653,892 bp. Use segment r for 3,152 bp 2025-01-31 10:01:44,489 DEBUG chr1:130713751-136322251: Successfully fit background model for 5,457,056 bp. Use segment r for 0 bp 2025-01-31 10:01:44,803 DEBUG chr1:136322251-139555751: Successfully fit background model for 3,027,997 bp. Use segment r for 0 bp 2025-01-31 10:01:44,829 DEBUG chr2:158589251-162926751: Successfully fit background model for 4,136,941 bp. Use segment r for 0 bp 2025-01-31 10:01:44,888 DEBUG chr3:142080751-146936251: Successfully fit background model for 4,607,061 bp. Use segment r for 0 bp 2025-01-31 10:01:45,099 DEBUG chr1:139555751-142616251: Successfully fit background model for 2,622,200 bp. Use segment r for 0 bp 2025-01-31 10:01:45,122 DEBUG chr4:120849751-131707751: Successfully fit background model for 9,581,201 bp. Use segment r for 0 bp 2025-01-31 10:01:45,256 DEBUG chr5:134138751-145236751: Successfully fit background model for 10,505,640 bp. Use segment r for 0 bp 2025-01-31 10:01:45,281 DEBUG chr1:142616251-144451251: Successfully fit background model for 1,559,958 bp. Use segment r for 0 bp 2025-01-31 10:01:45,320 DEBUG chr3:146936251-151760251: Successfully fit background model for 4,555,656 bp. Use segment r for 0 bp 2025-01-31 10:01:45,334 DEBUG chr2:162926751-168079251: Successfully fit background model for 4,971,952 bp. Use segment r for 0 bp 2025-01-31 10:01:45,374 DEBUG chr5:145236751-146221001: Successfully fit background model for 749,303 bp. Use segment r for 0 bp 2025-01-31 10:01:45,434 DEBUG chrX:110845751-124238001: Successfully fit background model for 10,525,873 bp. Use segment r for 2,975 bp 2025-01-31 10:01:45,559 DEBUG chr4:131707751-136277251: Successfully fit background model for 4,449,307 bp. Use segment r for 0 bp 2025-01-31 10:01:45,596 DEBUG chr3:151760251-154711501: Successfully fit background model for 2,800,322 bp. Use segment r for 0 bp 2025-01-31 10:01:45,735 DEBUG chr2:168079251-172285751: Successfully fit background model for 4,087,357 bp. Use segment r for 0 bp 2025-01-31 10:01:45,886 DEBUG chr1:144451251-150391751: Successfully fit background model for 5,221,082 bp. Use segment r for 0 bp 2025-01-31 10:01:45,920 DEBUG chr5:146221001-151834684: Successfully fit background model for 5,213,543 bp. Use segment r for 0 bp 2025-01-31 10:01:46,098 DEBUG chr3:154711501-160039680: Successfully fit background model for 4,706,248 bp. Use segment r for 0 bp 2025-01-31 10:01:46,126 DEBUG chr4:136277251-141747251: Successfully fit background model for 5,355,300 bp. Use segment r for 0 bp 2025-01-31 10:01:46,153 DEBUG chr2:172285751-175179501: Successfully fit background model for 2,666,457 bp. Use segment r for 4,015 bp 2025-01-31 10:01:46,260 DEBUG chrX:126025000-134046751: Successfully fit background model for 6,923,613 bp. Use segment r for 0 bp 2025-01-31 10:01:46,478 DEBUG chr2:176700000-179817751: Successfully fit background model for 1,926,783 bp. Use segment r for 0 bp 2025-01-31 10:01:46,706 DEBUG chr2:179817751-182113224: Successfully fit background model for 2,105,974 bp. Use segment r for 0 bp 2025-01-31 10:01:47,045 DEBUG chr4:141747251-147846501: Successfully fit background model for 3,869,291 bp. Use segment r for 1,359 bp 2025-01-31 10:01:48,094 DEBUG chr4:147846501-156508116: Successfully fit background model for 8,242,849 bp. Use segment r for 0 bp 2025-01-31 10:01:48,260 DEBUG chr1:150391751-168213751: Successfully fit background model for 16,790,005 bp. Use segment r for 0 bp 2025-01-31 10:01:48,566 DEBUG chr1:168213751-170834751: Successfully fit background model for 2,464,264 bp. Use segment r for 0 bp 2025-01-31 10:01:48,726 DEBUG chr1:170834751-172274251: Successfully fit background model for 1,335,207 bp. Use segment r for 0 bp 2025-01-31 10:01:49,622 DEBUG chr1:172274251-178301251: Successfully fit background model for 5,441,211 bp. Use segment r for 0 bp 2025-01-31 10:01:49,981 DEBUG chr1:178301251-181282751: Successfully fit background model for 2,873,558 bp. Use segment r for 0 bp 2025-01-31 10:01:50,545 DEBUG chr1:181282751-185403251: Successfully fit background model for 3,842,893 bp. Use segment r for 0 bp 2025-01-31 10:01:50,672 DEBUG chr1:185403251-185518751: Successfully fit background model for 113,826 bp. Use segment r for 0 bp 2025-01-31 10:01:52,998 DEBUG chr1:185518751-190761751: Successfully fit background model for 5,046,576 bp. Use segment r for 0 bp 2025-01-31 10:01:53,194 DEBUG chr1:190761751-191953251: Successfully fit background model for 1,146,976 bp. Use segment r for 0 bp 2025-01-31 10:01:53,921 DEBUG chr1:191953251-195471971: Successfully fit background model for 3,167,095 bp. Use segment r for 0 bp 2025-01-31 10:02:06,376 DEBUG chrX:134046751-169968751: Successfully fit background model for 29,773,806 bp. Use segment r for 1,936 bp 2025-01-31 10:02:06,566 DEBUG chrX:169968751-171031299: Successfully fit background model for 14,345 bp. Use segment r for 0 bp 2025-01-31 10:03:25,729 DEBUG chr6:3050000-9837251: Successfully fit background model for 6,017,304 bp. Use segment r for 0 bp 2025-01-31 10:03:27,261 DEBUG chr7:3004000-3614251: Successfully fit background model for 462,470 bp. Use segment r for 0 bp 2025-01-31 10:03:27,524 DEBUG chr7:3614251-5130251: Successfully fit background model for 1,214,146 bp. Use segment r for 76 bp 2025-01-31 10:03:27,591 DEBUG chr7:5130251-5726751: Successfully fit background model for 427,443 bp. Use segment r for 0 bp 2025-01-31 10:03:27,842 DEBUG chr7:5726751-7302751: Successfully fit background model for 1,329,004 bp. Use segment r for 172 bp 2025-01-31 10:03:27,953 DEBUG chr6:9837251-28257251: Successfully fit background model for 16,322,995 bp. Use segment r for 0 bp 2025-01-31 10:03:28,620 DEBUG chr6:28257251-35232751: Successfully fit background model for 6,674,311 bp. Use segment r for 0 bp 2025-01-31 10:03:28,631 DEBUG chr7:7302751-12286001: Successfully fit background model for 1,679,366 bp. Use segment r for 9,350 bp 2025-01-31 10:03:28,718 DEBUG chr7:12286001-12921251: Successfully fit background model for 501,571 bp. Use segment r for 0 bp 2025-01-31 10:03:28,746 DEBUG chr7:12921251-13063751: Successfully fit background model for 136,173 bp. Use segment r for 0 bp 2025-01-31 10:03:28,938 DEBUG chr6:35232751-38289251: Successfully fit background model for 2,818,990 bp. Use segment r for 0 bp 2025-01-31 10:03:29,059 DEBUG chr6:38289251-39374251: Successfully fit background model for 1,065,240 bp. Use segment r for 0 bp 2025-01-31 10:03:29,217 DEBUG chr7:13063751-15910751: Successfully fit background model for 1,757,738 bp. Use segment r for 3,612 bp 2025-01-31 10:03:29,343 DEBUG chr7:15910751-17096251: Successfully fit background model for 1,150,176 bp. Use segment r for 0 bp 2025-01-31 10:03:29,530 DEBUG chr6:39374251-44075751: Successfully fit background model for 4,209,629 bp. Use segment r for 0 bp 2025-01-31 10:03:29,626 DEBUG chr7:17096251-19002251: Successfully fit background model for 1,362,714 bp. Use segment r for 8,779 bp 2025-01-31 10:03:29,748 DEBUG chr7:19002251-20073001: Successfully fit background model for 1,019,708 bp. Use segment r for 0 bp 2025-01-31 10:03:29,764 DEBUG chr6:44075751-46408251: Successfully fit background model for 2,107,588 bp. Use segment r for 0 bp 2025-01-31 10:03:29,986 DEBUG chr7:22778500-24285751: Successfully fit background model for 831,238 bp. Use segment r for 3,171 bp 2025-01-31 10:03:30,161 DEBUG chr7:24285751-25922251: Successfully fit background model for 1,538,193 bp. Use segment r for 0 bp 2025-01-31 10:03:30,295 DEBUG chr7:25922251-27161751: Successfully fit background model for 971,425 bp. Use segment r for 0 bp 2025-01-31 10:03:30,331 DEBUG chr6:46408251-51500251: Successfully fit background model for 4,628,164 bp. Use segment r for 0 bp 2025-01-31 10:03:30,717 DEBUG chr7:27161751-31167751: Successfully fit background model for 3,775,631 bp. Use segment r for 0 bp 2025-01-31 10:03:31,117 DEBUG chr7:31167751-33785751: Successfully fit background model for 1,017,435 bp. Use segment r for 16,541 bp 2025-01-31 10:03:31,151 DEBUG chr6:51500251-59633751: Successfully fit background model for 7,537,438 bp. Use segment r for 0 bp 2025-01-31 10:03:31,334 DEBUG chr7:33785751-35932751: Successfully fit background model for 2,033,033 bp. Use segment r for 0 bp 2025-01-31 10:03:31,560 DEBUG chr7:35932751-38067251: Successfully fit background model for 2,086,686 bp. Use segment r for 0 bp 2025-01-31 10:03:31,590 DEBUG chr7:38067251-38286251: Successfully fit background model for 213,884 bp. Use segment r for 0 bp 2025-01-31 10:03:31,876 DEBUG chr6:59633751-67000251: Successfully fit background model for 6,549,762 bp. Use segment r for 0 bp 2025-01-31 10:03:32,083 DEBUG chr6:67000251-68953751: Successfully fit background model for 1,672,943 bp. Use segment r for 0 bp 2025-01-31 10:03:32,349 DEBUG chr6:68953751-70709501: Successfully fit background model for 1,318,166 bp. Use segment r for 750 bp 2025-01-31 10:03:32,502 DEBUG chr7:38286251-43883751: Successfully fit background model for 4,070,479 bp. Use segment r for 110 bp 2025-01-31 10:03:32,542 DEBUG chr6:70709501-72452251: Successfully fit background model for 1,682,705 bp. Use segment r for 0 bp 2025-01-31 10:03:32,608 DEBUG chr7:43883751-44814751: Successfully fit background model for 872,531 bp. Use segment r for 0 bp 2025-01-31 10:03:32,703 DEBUG chr7:44814751-45678751: Successfully fit background model for 848,108 bp. Use segment r for 0 bp 2025-01-31 10:03:32,724 DEBUG chr6:72452251-74302501: Successfully fit background model for 1,701,587 bp. Use segment r for 0 bp 2025-01-31 10:03:32,864 DEBUG chr7:45678751-47150251: Successfully fit background model for 1,441,541 bp. Use segment r for 0 bp 2025-01-31 10:03:33,004 DEBUG chr7:47150251-48462251: Successfully fit background model for 1,048,612 bp. Use segment r for 0 bp 2025-01-31 10:03:33,169 DEBUG chr7:48462251-49986751: Successfully fit background model for 1,449,914 bp. Use segment r for 0 bp 2025-01-31 10:03:33,306 DEBUG chr6:74302501-79662751: Successfully fit background model for 4,814,365 bp. Use segment r for 0 bp 2025-01-31 10:03:33,326 DEBUG chr7:49986751-51455751: Successfully fit background model for 1,248,041 bp. Use segment r for 0 bp 2025-01-31 10:03:33,393 DEBUG chr7:51455751-52022251: Successfully fit background model for 526,969 bp. Use segment r for 0 bp 2025-01-31 10:03:33,473 DEBUG chr10:3101500-3946751: Successfully fit background model for 759,875 bp. Use segment r for 0 bp 2025-01-31 10:03:33,643 DEBUG chr6:79662751-82995751: Successfully fit background model for 3,044,340 bp. Use segment r for 0 bp 2025-01-31 10:03:33,693 DEBUG chr10:3946751-5847751: Successfully fit background model for 1,760,798 bp. Use segment r for 0 bp 2025-01-31 10:03:33,744 DEBUG chr7:52022251-55345251: Successfully fit background model for 2,930,375 bp. Use segment r for 0 bp 2025-01-31 10:03:33,883 DEBUG chr7:55345251-56628251: Successfully fit background model for 1,118,195 bp. Use segment r for 0 bp 2025-01-31 10:03:34,449 DEBUG chr10:5847751-12916751: Successfully fit background model for 6,341,592 bp. Use segment r for 0 bp 2025-01-31 10:03:34,654 DEBUG chr10:12916751-14882001: Successfully fit background model for 1,858,209 bp. Use segment r for 0 bp 2025-01-31 10:03:34,712 DEBUG chr6:82995751-91962251: Successfully fit background model for 8,478,919 bp. Use segment r for 0 bp 2025-01-31 10:03:34,842 DEBUG chr10:14882001-16760251: Successfully fit background model for 1,634,669 bp. Use segment r for 0 bp 2025-01-31 10:03:34,999 DEBUG chr7:56628251-63851751: Successfully fit background model for 5,982,860 bp. Use segment r for 5,361 bp 2025-01-31 10:03:35,086 DEBUG chr7:63851751-64564251: Successfully fit background model for 650,430 bp. Use segment r for 0 bp 2025-01-31 10:03:35,560 DEBUG chr7:64564251-69127251: Successfully fit background model for 4,354,182 bp. Use segment r for 0 bp 2025-01-31 10:03:35,995 DEBUG chr7:69127251-73516751: Successfully fit background model for 4,103,859 bp. Use segment r for 0 bp 2025-01-31 10:03:36,103 DEBUG chr6:91962251-103940751: Successfully fit background model for 11,302,746 bp. Use segment r for 0 bp 2025-01-31 10:03:36,297 DEBUG chr7:73516751-76412251: Successfully fit background model for 2,655,703 bp. Use segment r for 0 bp 2025-01-31 10:03:36,452 DEBUG chr7:76412251-77919751: Successfully fit background model for 1,388,670 bp. Use segment r for 0 bp 2025-01-31 10:03:36,594 DEBUG chr10:16760251-31790751: Successfully fit background model for 13,744,084 bp. Use segment r for 0 bp 2025-01-31 10:03:36,595 DEBUG chr7:77919751-79233751: Successfully fit background model for 1,263,299 bp. Use segment r for 0 bp 2025-01-31 10:03:36,772 DEBUG chr7:79233751-80985751: Successfully fit background model for 1,707,064 bp. Use segment r for 0 bp 2025-01-31 10:03:37,009 DEBUG chr6:103940751-112695751: Successfully fit background model for 7,924,750 bp. Use segment r for 0 bp 2025-01-31 10:03:37,120 DEBUG chr6:112695751-113645251: Successfully fit background model for 923,273 bp. Use segment r for 0 bp 2025-01-31 10:03:37,177 DEBUG chr7:80985751-84921251: Successfully fit background model for 3,705,969 bp. Use segment r for 0 bp 2025-01-31 10:03:37,252 DEBUG chr10:31790751-38410751: Successfully fit background model for 5,970,321 bp. Use segment r for 0 bp 2025-01-31 10:03:37,450 DEBUG chr10:38410751-40106751: Successfully fit background model for 1,570,848 bp. Use segment r for 0 bp 2025-01-31 10:03:37,533 DEBUG chr7:84921251-88559251: Successfully fit background model for 3,231,206 bp. Use segment r for 0 bp 2025-01-31 10:03:37,730 DEBUG chr6:113645251-119174751: Successfully fit background model for 5,123,077 bp. Use segment r for 0 bp 2025-01-31 10:03:37,745 DEBUG chr7:88559251-90606751: Successfully fit background model for 1,863,567 bp. Use segment r for 0 bp 2025-01-31 10:03:37,783 DEBUG chr10:40106751-43508251: Successfully fit background model for 3,265,392 bp. Use segment r for 0 bp 2025-01-31 10:03:38,010 DEBUG chr7:90606751-92866751: Successfully fit background model for 2,109,757 bp. Use segment r for 0 bp 2025-01-31 10:03:38,029 DEBUG chr7:92866751-92977751: Successfully fit background model for 95,068 bp. Use segment r for 0 bp 2025-01-31 10:03:38,098 DEBUG chr6:119174751-122896251: Successfully fit background model for 3,452,336 bp. Use segment r for 0 bp 2025-01-31 10:03:38,118 DEBUG chr10:43508251-46831251: Successfully fit background model for 3,087,469 bp. Use segment r for 0 bp 2025-01-31 10:03:38,312 DEBUG chr7:92977751-95595251: Successfully fit background model for 2,320,668 bp. Use segment r for 0 bp 2025-01-31 10:03:38,357 DEBUG chr6:122896251-124658751: Successfully fit background model for 1,274,019 bp. Use segment r for 32 bp 2025-01-31 10:03:38,416 DEBUG chr6:124658751-125167251: Successfully fit background model for 487,395 bp. Use segment r for 0 bp 2025-01-31 10:03:38,440 DEBUG chr10:46831251-50138251: Successfully fit background model for 2,891,402 bp. Use segment r for 0 bp 2025-01-31 10:03:38,623 DEBUG chr7:95595251-98690751: Successfully fit background model for 2,946,750 bp. Use segment r for 0 bp 2025-01-31 10:03:38,924 DEBUG chr6:125167251-129949751: Successfully fit background model for 4,503,930 bp. Use segment r for 0 bp 2025-01-31 10:03:38,988 DEBUG chr7:98690751-102205251: Successfully fit background model for 3,438,508 bp. Use segment r for 0 bp 2025-01-31 10:03:39,338 DEBUG chr7:102205251-105819751: Successfully fit background model for 3,124,846 bp. Use segment r for 0 bp 2025-01-31 10:03:39,411 DEBUG chr6:129949751-134772751: Successfully fit background model for 3,994,361 bp. Use segment r for 0 bp 2025-01-31 10:03:39,499 DEBUG chr10:50138251-59215751: Successfully fit background model for 7,814,362 bp. Use segment r for 0 bp 2025-01-31 10:03:39,626 DEBUG chr6:134772751-136862251: Successfully fit background model for 2,023,428 bp. Use segment r for 0 bp 2025-01-31 10:03:39,863 DEBUG chr7:105819751-109088751: Successfully fit background model for 2,441,757 bp. Use segment r for 5,120 bp 2025-01-31 10:03:40,020 DEBUG chr10:59215751-64189751: Successfully fit background model for 4,786,554 bp. Use segment r for 0 bp 2025-01-31 10:03:40,065 DEBUG chr7:109088751-110923251: Successfully fit background model for 1,777,035 bp. Use segment r for 0 bp 2025-01-31 10:03:40,289 DEBUG chr10:64189751-65869751: Successfully fit background model for 1,442,416 bp. Use segment r for 86,490 bp 2025-01-31 10:03:40,856 DEBUG chr6:136862251-146576751: Successfully fit background model for 9,085,826 bp. Use segment r for 0 bp 2025-01-31 10:03:40,925 DEBUG chr10:65869751-71323751: Successfully fit background model for 5,157,922 bp. Use segment r for 0 bp 2025-01-31 10:03:41,185 DEBUG chr6:146576751-149736546: Successfully fit background model for 2,811,752 bp. Use segment r for 0 bp 2025-01-31 10:03:41,347 DEBUG chr10:71323751-75498751: Successfully fit background model for 3,780,780 bp. Use segment r for 0 bp 2025-01-31 10:03:41,809 DEBUG chr10:75498751-79645751: Successfully fit background model for 3,851,760 bp. Use segment r for 0 bp 2025-01-31 10:03:42,006 DEBUG chr7:110923251-126236751: Successfully fit background model for 14,617,678 bp. Use segment r for 0 bp 2025-01-31 10:03:42,040 DEBUG chr10:79645751-81649751: Successfully fit background model for 1,969,458 bp. Use segment r for 0 bp 2025-01-31 10:03:42,285 DEBUG chr7:126236751-128664751: Successfully fit background model for 2,336,206 bp. Use segment r for 0 bp 2025-01-31 10:03:42,517 DEBUG chr7:128664751-130533251: Successfully fit background model for 1,774,558 bp. Use segment r for 0 bp 2025-01-31 10:03:42,837 DEBUG chr7:130533251-133562751: Successfully fit background model for 2,923,182 bp. Use segment r for 0 bp 2025-01-31 10:03:43,600 DEBUG chr10:81649751-93037251: Successfully fit background model for 10,328,156 bp. Use segment r for 0 bp 2025-01-31 10:03:43,687 DEBUG chr7:133562751-140821251: Successfully fit background model for 6,908,893 bp. Use segment r for 0 bp 2025-01-31 10:03:43,797 DEBUG chr7:140821251-141685251: Successfully fit background model for 843,807 bp. Use segment r for 0 bp 2025-01-31 10:03:43,973 DEBUG chr10:93037251-96767251: Successfully fit background model for 3,606,945 bp. Use segment r for 0 bp 2025-01-31 10:03:44,284 DEBUG chr7:141685251-145441459: Successfully fit background model for 3,489,238 bp. Use segment r for 0 bp 2025-01-31 10:03:44,516 DEBUG chr10:96767251-100743751: Successfully fit background model for 3,605,813 bp. Use segment r for 0 bp 2025-01-31 10:03:46,653 DEBUG chr10:100743751-109980001: Successfully fit background model for 8,442,243 bp. Use segment r for 0 bp 2025-01-31 10:03:51,619 DEBUG chr10:109980001-123966001: Successfully fit background model for 13,058,139 bp. Use segment r for 0 bp 2025-01-31 10:03:51,927 DEBUG chr10:123966001-126894251: Successfully fit background model for 2,726,750 bp. Use segment r for 0 bp 2025-01-31 10:03:52,028 DEBUG chr8:3070000-4780751: Successfully fit background model for 1,498,466 bp. Use segment r for 0 bp 2025-01-31 10:03:52,138 DEBUG chr10:126894251-128769751: Successfully fit background model for 1,821,473 bp. Use segment r for 0 bp 2025-01-31 10:03:52,314 DEBUG chr8:4780751-7573751: Successfully fit background model for 2,455,066 bp. Use segment r for 0 bp 2025-01-31 10:03:52,326 DEBUG chr10:128769751-130694993: Successfully fit background model for 1,533,719 bp. Use segment r for 0 bp 2025-01-31 10:03:52,542 DEBUG chr8:7573751-9718751: Successfully fit background model for 2,023,045 bp. Use segment r for 0 bp 2025-01-31 10:03:54,374 DEBUG chr8:9718751-13278251: Successfully fit background model for 3,462,974 bp. Use segment r for 0 bp 2025-01-31 10:03:54,860 DEBUG chr8:13278251-16145501: Successfully fit background model for 2,660,201 bp. Use segment r for 9,775 bp 2025-01-31 10:03:55,037 DEBUG chr8:16145501-17680751: Successfully fit background model for 1,421,915 bp. Use segment r for 0 bp 2025-01-31 10:03:58,020 DEBUG chr8:17680751-29157751: Successfully fit background model for 9,119,942 bp. Use segment r for 34,705 bp 2025-01-31 10:03:58,368 DEBUG chr8:29157751-32723251: Successfully fit background model for 3,233,756 bp. Use segment r for 0 bp 2025-01-31 10:03:58,918 DEBUG chr8:32723251-37512751: Successfully fit background model for 4,494,374 bp. Use segment r for 0 bp 2025-01-31 10:03:59,058 DEBUG chr14:3032500-5131001: Successfully fit background model for 69,063 bp. Use segment r for 5,074 bp 2025-01-31 10:03:59,133 DEBUG chr8:37512751-39717251: Successfully fit background model for 1,957,771 bp. Use segment r for 0 bp 2025-01-31 10:03:59,352 DEBUG chr8:39717251-41494251: Successfully fit background model for 1,586,585 bp. Use segment r for 0 bp 2025-01-31 10:03:59,579 DEBUG chr8:41494251-43771251: Successfully fit background model for 1,983,996 bp. Use segment r for 0 bp 2025-01-31 10:04:00,133 DEBUG chr8:43771251-49048251: Successfully fit background model for 4,976,123 bp. Use segment r for 0 bp 2025-01-31 10:04:01,371 DEBUG chr8:49048251-57486251: Successfully fit background model for 7,323,220 bp. Use segment r for 0 bp 2025-01-31 10:04:01,378 DEBUG chr14:5841000-18233751: Successfully fit background model for 9,815,561 bp. Use segment r for 4,857 bp 2025-01-31 10:04:01,407 DEBUG chr14:18233751-18285251: Successfully fit background model for 46,465 bp. Use segment r for 0 bp 2025-01-31 10:04:01,434 DEBUG chr8:57486251-57963251: Successfully fit background model for 452,094 bp. Use segment r for 0 bp 2025-01-31 10:04:01,572 DEBUG chr14:18285251-19696251: Successfully fit background model for 1,077,327 bp. Use segment r for 0 bp 2025-01-31 10:04:01,753 DEBUG chr8:57963251-60942751: Successfully fit background model for 2,588,960 bp. Use segment r for 0 bp 2025-01-31 10:04:01,766 DEBUG chr8:60942751-60993751: Successfully fit background model for 50,151 bp. Use segment r for 0 bp 2025-01-31 10:04:01,780 DEBUG chr14:19696251-21699751: Successfully fit background model for 1,937,383 bp. Use segment r for 0 bp 2025-01-31 10:04:02,636 DEBUG chr14:21699751-29894751: Successfully fit background model for 7,415,258 bp. Use segment r for 0 bp 2025-01-31 10:04:02,836 DEBUG chr14:29894751-31969251: Successfully fit background model for 2,019,139 bp. Use segment r for 0 bp 2025-01-31 10:04:03,145 DEBUG chr14:31969251-35164251: Successfully fit background model for 3,075,084 bp. Use segment r for 0 bp 2025-01-31 10:04:03,279 DEBUG chr8:60993751-69749251: Successfully fit background model for 7,808,593 bp. Use segment r for 1,726 bp 2025-01-31 10:04:03,356 DEBUG chr14:35164251-37237751: Successfully fit background model for 1,879,653 bp. Use segment r for 0 bp 2025-01-31 10:04:03,406 DEBUG chr8:69749251-70913751: Successfully fit background model for 1,140,801 bp. Use segment r for 0 bp 2025-01-31 10:04:03,566 DEBUG chr8:70913751-72459751: Successfully fit background model for 1,298,804 bp. Use segment r for 0 bp 2025-01-31 10:04:03,669 DEBUG chr14:37237751-40505001: Successfully fit background model for 2,937,219 bp. Use segment r for 0 bp 2025-01-31 10:04:04,384 DEBUG chr14:40505001-45303751: Successfully fit background model for 1,869,593 bp. Use segment r for 3,138 bp 2025-01-31 10:04:04,804 DEBUG chr14:45303751-49545251: Successfully fit background model for 4,049,177 bp. Use segment r for 0 bp 2025-01-31 10:04:04,826 DEBUG chr8:72459751-83565251: Successfully fit background model for 10,082,824 bp. Use segment r for 0 bp 2025-01-31 10:04:04,934 DEBUG chr14:49545251-50784751: Successfully fit background model for 1,037,673 bp. Use segment r for 0 bp 2025-01-31 10:04:04,994 DEBUG chr8:83565251-85100751: Successfully fit background model for 1,507,355 bp. Use segment r for 0 bp 2025-01-31 10:04:05,106 DEBUG chr14:50784751-52504251: Successfully fit background model for 1,481,546 bp. Use segment r for 0 bp 2025-01-31 10:04:05,167 DEBUG chr9:3002500-13240251: Successfully fit background model for 8,962,986 bp. Use segment r for 0 bp 2025-01-31 10:04:05,292 DEBUG chr14:52504251-54360251: Successfully fit background model for 1,075,028 bp. Use segment r for 0 bp 2025-01-31 10:04:05,371 DEBUG chr9:13240251-15253251: Successfully fit background model for 1,825,989 bp. Use segment r for 0 bp 2025-01-31 10:04:05,415 DEBUG chr14:54360251-55539251: Successfully fit background model for 1,126,373 bp. Use segment r for 0 bp 2025-01-31 10:04:05,949 DEBUG chr9:15253251-20481251: Successfully fit background model for 4,615,137 bp. Use segment r for 0 bp 2025-01-31 10:04:06,132 DEBUG chr9:20481251-22305251: Successfully fit background model for 1,753,169 bp. Use segment r for 0 bp 2025-01-31 10:04:06,169 DEBUG chr8:85100751-94159251: Successfully fit background model for 8,652,824 bp. Use segment r for 0 bp 2025-01-31 10:04:06,404 DEBUG chr8:94159251-96451751: Successfully fit background model for 2,171,697 bp. Use segment r for 0 bp 2025-01-31 10:04:06,460 DEBUG chr9:22305251-25685751: Successfully fit background model for 3,109,465 bp. Use segment r for 0 bp 2025-01-31 10:04:07,082 DEBUG chr9:25685751-31029251: Successfully fit background model for 5,069,216 bp. Use segment r for 0 bp 2025-01-31 10:04:07,133 DEBUG chr8:96451751-102792751: Successfully fit background model for 5,801,036 bp. Use segment r for 0 bp 2025-01-31 10:04:07,286 DEBUG chr9:31029251-33137251: Successfully fit background model for 2,012,306 bp. Use segment r for 0 bp 2025-01-31 10:04:07,308 DEBUG chr8:102792751-104533751: Successfully fit background model for 1,650,414 bp. Use segment r for 0 bp 2025-01-31 10:04:07,491 DEBUG chr9:33137251-35097751: Successfully fit background model for 1,839,798 bp. Use segment r for 0 bp 2025-01-31 10:04:07,583 DEBUG chr8:104533751-107380251: Successfully fit background model for 2,666,482 bp. Use segment r for 0 bp 2025-01-31 10:04:07,683 DEBUG chr14:55539251-71223251: Successfully fit background model for 14,499,870 bp. Use segment r for 0 bp 2025-01-31 10:04:07,751 DEBUG chr9:35097751-37820251: Successfully fit background model for 2,454,150 bp. Use segment r for 0 bp 2025-01-31 10:04:07,921 DEBUG chr8:107380251-110704751: Successfully fit background model for 3,230,605 bp. Use segment r for 0 bp 2025-01-31 10:04:07,994 DEBUG chr14:71223251-74291751: Successfully fit background model for 2,803,871 bp. Use segment r for 0 bp 2025-01-31 10:04:08,026 DEBUG chr9:37820251-40749251: Successfully fit background model for 2,639,950 bp. Use segment r for 0 bp 2025-01-31 10:04:08,036 DEBUG chr8:110704751-111850751: Successfully fit background model for 1,115,387 bp. Use segment r for 0 bp 2025-01-31 10:04:08,039 DEBUG chr9:40749251-40812251: Successfully fit background model for 59,755 bp. Use segment r for 0 bp 2025-01-31 10:04:08,366 DEBUG chr9:40812251-44059751: Successfully fit background model for 3,189,268 bp. Use segment r for 0 bp 2025-01-31 10:04:08,425 DEBUG chr9:44059751-44573251: Successfully fit background model for 488,777 bp. Use segment r for 0 bp 2025-01-31 10:04:08,552 DEBUG chr14:74291751-79965501: Successfully fit background model for 5,390,419 bp. Use segment r for 0 bp 2025-01-31 10:04:08,911 DEBUG chr8:111850751-116868751: Successfully fit background model for 4,548,926 bp. Use segment r for 284,904 bp 2025-01-31 10:04:09,209 DEBUG chr8:116868751-119358251: Successfully fit background model for 2,416,629 bp. Use segment r for 0 bp 2025-01-31 10:04:09,653 DEBUG chr14:79965501-86225751: Successfully fit background model for 5,607,324 bp. Use segment r for 0 bp 2025-01-31 10:04:09,677 DEBUG chr8:119358251-123996251: Successfully fit background model for 4,436,808 bp. Use segment r for 0 bp 2025-01-31 10:04:09,860 DEBUG chr14:86225751-87544251: Successfully fit background model for 1,231,311 bp. Use segment r for 0 bp 2025-01-31 10:04:09,949 DEBUG chr8:123996251-126898251: Successfully fit background model for 2,809,089 bp. Use segment r for 0 bp 2025-01-31 10:04:10,180 DEBUG chr8:126898251-129401213: Successfully fit background model for 2,212,055 bp. Use segment r for 0 bp 2025-01-31 10:04:10,365 DEBUG chr9:44573251-56846751: Successfully fit background model for 11,729,507 bp. Use segment r for 0 bp 2025-01-31 10:04:10,874 DEBUG chr9:56846751-59752251: Successfully fit background model for 2,821,834 bp. Use segment r for 0 bp 2025-01-31 10:04:11,023 DEBUG chr9:59752251-61277251: Successfully fit background model for 1,483,534 bp. Use segment r for 0 bp 2025-01-31 10:04:11,849 DEBUG chr14:87544251-98747751: Successfully fit background model for 10,178,400 bp. Use segment r for 0 bp 2025-01-31 10:04:12,118 DEBUG chr9:61277251-66880251: Successfully fit background model for 5,459,323 bp. Use segment r for 0 bp 2025-01-31 10:04:14,091 DEBUG chr14:98747751-107510751: Successfully fit background model for 8,047,955 bp. Use segment r for 0 bp 2025-01-31 10:04:14,643 DEBUG chr14:107510751-113279251: Successfully fit background model for 5,216,769 bp. Use segment r for 0 bp 2025-01-31 10:04:15,515 DEBUG chr14:113279251-121250251: Successfully fit background model for 7,341,387 bp. Use segment r for 0 bp 2025-01-31 10:04:15,597 DEBUG chr14:121250251-121951251: Successfully fit background model for 688,520 bp. Use segment r for 0 bp 2025-01-31 10:04:15,867 DEBUG chr14:121951251-124902244: Successfully fit background model for 2,476,260 bp. Use segment r for 0 bp 2025-01-31 10:04:16,332 DEBUG chr9:66880251-79029751: Successfully fit background model for 11,471,145 bp. Use segment r for 0 bp 2025-01-31 10:04:17,607 DEBUG chr9:79029751-90112751: Successfully fit background model for 9,678,963 bp. Use segment r for 0 bp 2025-01-31 10:04:17,670 DEBUG chr9:90112751-90545251: Successfully fit background model for 384,871 bp. Use segment r for 0 bp 2025-01-31 10:04:18,080 DEBUG chr9:90545251-94532751: Successfully fit background model for 3,563,342 bp. Use segment r for 0 bp 2025-01-31 10:04:19,338 DEBUG chr9:94532751-106139751: Successfully fit background model for 11,087,225 bp. Use segment r for 0 bp 2025-01-31 10:04:19,577 DEBUG chr9:106139751-108608751: Successfully fit background model for 2,372,321 bp. Use segment r for 0 bp 2025-01-31 10:04:19,913 DEBUG chr9:108608751-112434251: Successfully fit background model for 3,486,272 bp. Use segment r for 0 bp 2025-01-31 10:04:20,595 DEBUG chr9:112434251-119320251: Successfully fit background model for 6,492,430 bp. Use segment r for 0 bp 2025-01-31 10:04:21,097 DEBUG chr9:119320251-124595110: Successfully fit background model for 4,732,153 bp. Use segment r for 0 bp 2025-01-31 10:05:09,647 DEBUG chr11:3101000-3203251: Successfully fit background model for 75,214 bp. Use segment r for 0 bp 2025-01-31 10:05:09,978 DEBUG chr11:3203251-6776251: Successfully fit background model for 3,423,900 bp. Use segment r for 0 bp 2025-01-31 10:05:10,194 DEBUG chr11:6776251-9253251: Successfully fit background model for 2,247,218 bp. Use segment r for 0 bp 2025-01-31 10:05:10,359 DEBUG chr11:9253251-11145001: Successfully fit background model for 1,667,631 bp. Use segment r for 0 bp 2025-01-31 10:05:10,490 DEBUG chr11:11145001-12525251: Successfully fit background model for 1,268,296 bp. Use segment r for 0 bp 2025-01-31 10:05:10,827 DEBUG chr11:12525251-16014751: Successfully fit background model for 3,074,728 bp. Use segment r for 0 bp 2025-01-31 10:05:10,949 DEBUG chr11:16014751-17298251: Successfully fit background model for 1,153,608 bp. Use segment r for 0 bp 2025-01-31 10:05:11,142 DEBUG chr11:17298251-19446751: Successfully fit background model for 1,970,483 bp. Use segment r for 0 bp 2025-01-31 10:05:11,600 DEBUG chr11:19446751-24373251: Successfully fit background model for 4,655,553 bp. Use segment r for 0 bp 2025-01-31 10:05:11,968 DEBUG chr11:24373251-28741001: Successfully fit background model for 3,919,150 bp. Use segment r for 0 bp 2025-01-31 10:05:12,290 DEBUG chr13:3002000-21157751: Successfully fit background model for 15,923,324 bp. Use segment r for 0 bp 2025-01-31 10:05:12,367 DEBUG chr13:21157751-21707251: Successfully fit background model for 511,977 bp. Use segment r for 0 bp 2025-01-31 10:05:12,410 DEBUG chr13:21707251-22054251: Successfully fit background model for 291,323 bp. Use segment r for 0 bp 2025-01-31 10:05:12,522 DEBUG chr13:22054251-23284751: Successfully fit background model for 924,048 bp. Use segment r for 0 bp 2025-01-31 10:05:12,576 DEBUG chr13:23284751-23773751: Successfully fit background model for 453,728 bp. Use segment r for 0 bp 2025-01-31 10:05:12,691 DEBUG chr11:28741001-36252751: Successfully fit background model for 6,977,161 bp. Use segment r for 0 bp 2025-01-31 10:05:12,719 DEBUG chr13:23773751-25311251: Successfully fit background model for 1,449,268 bp. Use segment r for 0 bp 2025-01-31 10:05:12,975 DEBUG chr13:25311251-28014751: Successfully fit background model for 2,418,766 bp. Use segment r for 0 bp 2025-01-31 10:05:13,394 DEBUG chr11:36252751-44448751: Successfully fit background model for 7,637,825 bp. Use segment r for 0 bp 2025-01-31 10:05:13,539 DEBUG chr13:28014751-33931751: Successfully fit background model for 5,318,891 bp. Use segment r for 0 bp 2025-01-31 10:05:13,590 DEBUG chr12:3000500-5418751: Successfully fit background model for 2,224,498 bp. Use segment r for 0 bp 2025-01-31 10:05:13,675 DEBUG chr11:44448751-47448251: Successfully fit background model for 2,806,270 bp. Use segment r for 0 bp 2025-01-31 10:05:13,719 DEBUG chr12:5418751-6843251: Successfully fit background model for 1,266,533 bp. Use segment r for 0 bp 2025-01-31 10:05:13,796 DEBUG chr11:47448251-48771251: Successfully fit background model for 1,180,367 bp. Use segment r for 0 bp 2025-01-31 10:05:13,813 DEBUG chr11:48771251-48877251: Successfully fit background model for 103,029 bp. Use segment r for 0 bp 2025-01-31 10:05:13,942 DEBUG chr13:33931751-38609251: Successfully fit background model for 4,406,845 bp. Use segment r for 0 bp 2025-01-31 10:05:13,999 DEBUG chr12:6843251-9926251: Successfully fit background model for 2,851,906 bp. Use segment r for 0 bp 2025-01-31 10:05:14,368 DEBUG chr13:38609251-43170251: Successfully fit background model for 4,325,706 bp. Use segment r for 0 bp 2025-01-31 10:05:14,491 DEBUG chr12:9926251-15194501: Successfully fit background model for 4,762,979 bp. Use segment r for 0 bp 2025-01-31 10:05:14,919 DEBUG chr11:48877251-58903251: Successfully fit background model for 9,413,377 bp. Use segment r for 0 bp 2025-01-31 10:05:15,249 DEBUG chr11:58903251-62454251: Successfully fit background model for 3,375,592 bp. Use segment r for 0 bp 2025-01-31 10:05:15,275 DEBUG chr13:43170251-51829251: Successfully fit background model for 7,969,267 bp. Use segment r for 0 bp 2025-01-31 10:05:15,513 DEBUG chr13:51829251-54443751: Successfully fit background model for 2,528,595 bp. Use segment r for 0 bp 2025-01-31 10:05:15,635 DEBUG chr13:54443751-55713751: Successfully fit background model for 1,225,754 bp. Use segment r for 0 bp 2025-01-31 10:05:15,820 DEBUG chr11:62454251-68965751: Successfully fit background model for 6,283,098 bp. Use segment r for 0 bp 2025-01-31 10:05:15,871 DEBUG chr13:55713751-58110751: Successfully fit background model for 2,343,093 bp. Use segment r for 0 bp 2025-01-31 10:05:15,926 DEBUG chr11:68965751-70022251: Successfully fit background model for 1,038,025 bp. Use segment r for 0 bp 2025-01-31 10:05:15,948 DEBUG chr12:15194501-24531751: Successfully fit background model for 4,781,528 bp. Use segment r for 2,945 bp 2025-01-31 10:05:15,994 DEBUG chr12:24531751-24854751: Successfully fit background model for 308,930 bp. Use segment r for 0 bp 2025-01-31 10:05:16,027 DEBUG chr11:70022251-71078751: Successfully fit background model for 1,015,273 bp. Use segment r for 0 bp 2025-01-31 10:05:16,132 DEBUG chr13:58110751-60962751: Successfully fit background model for 2,720,700 bp. Use segment r for 0 bp 2025-01-31 10:05:16,381 DEBUG chr11:71078751-74829751: Successfully fit background model for 3,434,612 bp. Use segment r for 0 bp 2025-01-31 10:05:16,396 DEBUG chr11:74829751-74899251: Successfully fit background model for 61,792 bp. Use segment r for 0 bp 2025-01-31 10:05:16,426 DEBUG chr13:60962751-63093751: Successfully fit background model for 1,574,396 bp. Use segment r for 51,589 bp 2025-01-31 10:05:16,558 DEBUG chr13:63093751-64374751: Successfully fit background model for 1,230,783 bp. Use segment r for 0 bp 2025-01-31 10:05:16,842 DEBUG chr11:74899251-79703751: Successfully fit background model for 4,678,284 bp. Use segment r for 0 bp 2025-01-31 10:05:17,107 DEBUG chr11:79703751-82746251: Successfully fit background model for 2,942,123 bp. Use segment r for 0 bp 2025-01-31 10:05:17,257 DEBUG chr12:24854751-36704251: Successfully fit background model for 11,140,706 bp. Use segment r for 0 bp 2025-01-31 10:05:17,478 DEBUG chr12:36704251-39010251: Successfully fit background model for 2,114,855 bp. Use segment r for 0 bp 2025-01-31 10:05:17,683 DEBUG chr13:64374751-72287251: Successfully fit background model for 5,866,646 bp. Use segment r for 14,586 bp 2025-01-31 10:05:17,784 DEBUG chr11:82746251-89620751: Successfully fit background model for 6,598,387 bp. Use segment r for 0 bp 2025-01-31 10:05:17,899 DEBUG chr11:89620751-90788751: Successfully fit background model for 1,113,272 bp. Use segment r for 0 bp 2025-01-31 10:05:17,904 DEBUG chr13:72287251-74616751: Successfully fit background model for 2,203,378 bp. Use segment r for 0 bp 2025-01-31 10:05:18,142 DEBUG chr11:90788751-93259001: Successfully fit background model for 2,271,539 bp. Use segment r for 0 bp 2025-01-31 10:05:18,248 DEBUG chr11:93259001-94208751: Successfully fit background model for 904,524 bp. Use segment r for 0 bp 2025-01-31 10:05:18,252 DEBUG chr13:74616751-78149251: Successfully fit background model for 3,131,979 bp. Use segment r for 0 bp 2025-01-31 10:05:18,266 DEBUG chr13:78149251-78213251: Successfully fit background model for 63,434 bp. Use segment r for 0 bp 2025-01-31 10:05:18,483 DEBUG chr11:94208751-96903001: Successfully fit background model for 2,630,606 bp. Use segment r for 0 bp 2025-01-31 10:05:18,555 DEBUG chr13:78213251-80881751: Successfully fit background model for 2,396,277 bp. Use segment r for 0 bp 2025-01-31 10:05:18,632 DEBUG chr13:80881751-81624251: Successfully fit background model for 700,708 bp. Use segment r for 0 bp 2025-01-31 10:05:18,655 DEBUG chr13:81624251-81784251: Successfully fit background model for 150,083 bp. Use segment r for 0 bp 2025-01-31 10:05:18,663 DEBUG chr11:96903001-98904251: Successfully fit background model for 1,955,758 bp. Use segment r for 0 bp 2025-01-31 10:05:18,783 DEBUG chr11:98904251-100273251: Successfully fit background model for 1,294,196 bp. Use segment r for 0 bp 2025-01-31 10:05:18,844 DEBUG chr13:81784251-83686251: Successfully fit background model for 1,749,612 bp. Use segment r for 0 bp 2025-01-31 10:05:18,856 DEBUG chr13:83686251-83738751: Successfully fit background model for 45,290 bp. Use segment r for 0 bp 2025-01-31 10:05:19,040 DEBUG chr11:100273251-103165001: Successfully fit background model for 2,821,052 bp. Use segment r for 0 bp 2025-01-31 10:05:19,297 DEBUG chr11:103165001-106063251: Successfully fit background model for 2,770,036 bp. Use segment r for 0 bp 2025-01-31 10:05:19,510 DEBUG chr11:106063251-108498751: Successfully fit background model for 2,363,410 bp. Use segment r for 0 bp 2025-01-31 10:05:19,532 DEBUG chr13:83738751-90880251: Successfully fit background model for 6,379,531 bp. Use segment r for 0 bp 2025-01-31 10:05:19,554 DEBUG chr12:39010251-51492251: Successfully fit background model for 11,085,372 bp. Use segment r for 133,954 bp 2025-01-31 10:05:19,699 DEBUG chr11:108498751-110613751: Successfully fit background model for 2,030,812 bp. Use segment r for 0 bp 2025-01-31 10:05:19,883 DEBUG chr11:110613751-112477501: Successfully fit background model for 1,776,629 bp. Use segment r for 0 bp 2025-01-31 10:05:19,912 DEBUG chr12:51492251-55300751: Successfully fit background model for 3,410,613 bp. Use segment r for 0 bp 2025-01-31 10:05:20,151 DEBUG chr11:112477501-115153251: Successfully fit background model for 2,582,970 bp. Use segment r for 0 bp 2025-01-31 10:05:20,368 DEBUG chr12:55300751-60085751: Successfully fit background model for 4,355,954 bp. Use segment r for 0 bp 2025-01-31 10:05:20,634 DEBUG chr13:90880251-100637251: Successfully fit background model for 9,176,810 bp. Use segment r for 0 bp 2025-01-31 10:05:20,661 DEBUG chr12:60085751-63268251: Successfully fit background model for 2,805,841 bp. Use segment r for 0 bp 2025-01-31 10:05:20,859 DEBUG chr11:115153251-122082543: Successfully fit background model for 6,613,705 bp. Use segment r for 0 bp 2025-01-31 10:05:21,263 DEBUG chr12:63268251-69154751: Successfully fit background model for 5,281,913 bp. Use segment r for 0 bp 2025-01-31 10:05:21,814 DEBUG chr13:100637251-111682251: Successfully fit background model for 10,268,704 bp. Use segment r for 0 bp 2025-01-31 10:05:21,934 DEBUG chr13:111682251-112740251: Successfully fit background model for 1,021,589 bp. Use segment r for 0 bp 2025-01-31 10:05:22,243 DEBUG chr13:112740251-115821251: Successfully fit background model for 2,913,673 bp. Use segment r for 0 bp 2025-01-31 10:05:22,340 DEBUG chr15:3053000-5097251: Successfully fit background model for 1,740,955 bp. Use segment r for 0 bp 2025-01-31 10:05:22,603 DEBUG chr13:115821251-119407751: Successfully fit background model for 3,266,238 bp. Use segment r for 0 bp 2025-01-31 10:05:22,629 DEBUG chr15:5097251-8086001: Successfully fit background model for 2,729,366 bp. Use segment r for 0 bp 2025-01-31 10:05:22,717 DEBUG chr13:119407751-120421639: Successfully fit background model for 421,427 bp. Use segment r for 0 bp 2025-01-31 10:05:22,841 DEBUG chr12:69154751-83312751: Successfully fit background model for 13,398,255 bp. Use segment r for 0 bp 2025-01-31 10:05:23,182 DEBUG chr15:8086001-13457251: Successfully fit background model for 4,972,342 bp. Use segment r for 0 bp 2025-01-31 10:05:23,210 DEBUG chr12:83312751-87265751: Successfully fit background model for 3,853,916 bp. Use segment r for 0 bp 2025-01-31 10:05:23,650 DEBUG chr12:87265751-92051251: Successfully fit background model for 4,053,813 bp. Use segment r for 0 bp 2025-01-31 10:05:24,147 DEBUG chr15:13457251-23158251: Successfully fit background model for 8,663,879 bp. Use segment r for 0 bp 2025-01-31 10:05:24,149 DEBUG chr12:92051251-97001251: Successfully fit background model for 4,449,716 bp. Use segment r for 0 bp 2025-01-31 10:05:24,346 DEBUG chr15:23158251-25191751: Successfully fit background model for 1,788,961 bp. Use segment r for 0 bp 2025-01-31 10:05:24,367 DEBUG chr12:97001251-99274751: Successfully fit background model for 2,104,393 bp. Use segment r for 0 bp 2025-01-31 10:05:24,648 DEBUG chr15:25191751-28324251: Successfully fit background model for 2,957,846 bp. Use segment r for 0 bp 2025-01-31 10:05:24,896 DEBUG chr15:28324251-31000251: Successfully fit background model for 2,413,691 bp. Use segment r for 0 bp 2025-01-31 10:05:24,969 DEBUG chr15:31000251-31673251: Successfully fit background model for 622,654 bp. Use segment r for 0 bp 2025-01-31 10:05:25,014 DEBUG chr12:99274751-105848251: Successfully fit background model for 6,170,468 bp. Use segment r for 0 bp 2025-01-31 10:05:25,167 DEBUG chr15:31673251-33776751: Successfully fit background model for 1,875,382 bp. Use segment r for 0 bp 2025-01-31 10:05:25,417 DEBUG chr12:105848251-110363251: Successfully fit background model for 4,374,184 bp. Use segment r for 0 bp 2025-01-31 10:05:25,658 DEBUG chr15:33776751-39116751: Successfully fit background model for 4,825,144 bp. Use segment r for 0 bp 2025-01-31 10:05:25,694 DEBUG chr12:110363251-113224751: Successfully fit background model for 2,778,725 bp. Use segment r for 0 bp 2025-01-31 10:05:25,881 DEBUG chr12:113224751-115127251: Successfully fit background model for 1,636,803 bp. Use segment r for 0 bp 2025-01-31 10:05:26,175 DEBUG chr15:39116751-44881251: Successfully fit background model for 5,276,196 bp. Use segment r for 0 bp 2025-01-31 10:05:26,369 DEBUG chr12:115127251-120129022: Successfully fit background model for 4,339,238 bp. Use segment r for 0 bp 2025-01-31 10:05:26,662 DEBUG chr15:44881251-50144251: Successfully fit background model for 4,718,719 bp. Use segment r for 0 bp 2025-01-31 10:05:27,387 DEBUG chr15:50144251-57885751: Successfully fit background model for 7,080,262 bp. Use segment r for 0 bp 2025-01-31 10:05:27,586 DEBUG chr15:57885751-59954751: Successfully fit background model for 1,998,435 bp. Use segment r for 0 bp 2025-01-31 10:05:27,743 DEBUG chr16:3101000-5434251: Successfully fit background model for 1,906,833 bp. Use segment r for 0 bp 2025-01-31 10:05:27,991 DEBUG chr16:5434251-8045751: Successfully fit background model for 2,499,701 bp. Use segment r for 0 bp 2025-01-31 10:05:28,632 DEBUG chr15:59954751-69156751: Successfully fit background model for 8,373,687 bp. Use segment r for 0 bp 2025-01-31 10:05:28,634 DEBUG chr16:8045751-14484751: Successfully fit background model for 6,076,952 bp. Use segment r for 0 bp 2025-01-31 10:05:28,850 DEBUG chr15:69156751-71497251: Successfully fit background model for 2,133,512 bp. Use segment r for 0 bp 2025-01-31 10:05:28,893 DEBUG chr16:14484751-17110251: Successfully fit background model for 2,299,479 bp. Use segment r for 0 bp 2025-01-31 10:05:28,992 DEBUG chr15:71497251-73044251: Successfully fit background model for 1,466,122 bp. Use segment r for 0 bp 2025-01-31 10:05:29,084 DEBUG chr16:17110251-19043001: Successfully fit background model for 1,860,410 bp. Use segment r for 0 bp 2025-01-31 10:05:29,150 DEBUG chr16:19043001-19652751: Successfully fit background model for 473,127 bp. Use segment r for 0 bp 2025-01-31 10:05:29,257 DEBUG chr15:73044251-75854751: Successfully fit background model for 2,634,535 bp. Use segment r for 0 bp 2025-01-31 10:05:29,518 DEBUG chr16:19652751-23485751: Successfully fit background model for 3,582,650 bp. Use segment r for 0 bp 2025-01-31 10:05:29,871 DEBUG chr15:75854751-82389251: Successfully fit background model for 6,250,419 bp. Use segment r for 0 bp 2025-01-31 10:05:30,060 DEBUG chr16:23485751-29207251: Successfully fit background model for 5,365,754 bp. Use segment r for 0 bp 2025-01-31 10:05:30,177 DEBUG chr15:82389251-85806251: Successfully fit background model for 3,256,773 bp. Use segment r for 0 bp 2025-01-31 10:05:30,451 DEBUG chr15:85806251-88811251: Successfully fit background model for 2,916,302 bp. Use segment r for 0 bp 2025-01-31 10:05:30,542 DEBUG chr15:88811251-89747251: Successfully fit background model for 889,362 bp. Use segment r for 0 bp 2025-01-31 10:05:31,115 DEBUG chr16:29207251-39070251: Successfully fit background model for 9,425,151 bp. Use segment r for 0 bp 2025-01-31 10:05:31,154 DEBUG chr15:89747251-96239751: Successfully fit background model for 6,119,758 bp. Use segment r for 0 bp 2025-01-31 10:05:31,362 DEBUG chr15:96239751-98504251: Successfully fit background model for 2,155,343 bp. Use segment r for 0 bp 2025-01-31 10:05:31,513 DEBUG chr16:39070251-43317751: Successfully fit background model for 3,957,367 bp. Use segment r for 0 bp 2025-01-31 10:05:31,653 DEBUG chr16:43317751-44763251: Successfully fit background model for 1,387,283 bp. Use segment r for 0 bp 2025-01-31 10:05:31,857 DEBUG chr15:98504251-103367751: Successfully fit background model for 4,710,008 bp. Use segment r for 0 bp 2025-01-31 10:05:31,979 DEBUG chr15:103367751-104043685: Successfully fit background model for 429,154 bp. Use segment r for 0 bp 2025-01-31 10:05:32,154 DEBUG chr16:44763251-49764251: Successfully fit background model for 4,448,532 bp. Use segment r for 0 bp 2025-01-31 10:05:32,268 DEBUG chr16:49764251-50924251: Successfully fit background model for 1,114,725 bp. Use segment r for 0 bp 2025-01-31 10:05:32,686 DEBUG chr16:50924251-55817751: Successfully fit background model for 4,363,384 bp. Use segment r for 0 bp 2025-01-31 10:05:32,723 DEBUG chr16:55817751-56078751: Successfully fit background model for 230,486 bp. Use segment r for 0 bp 2025-01-31 10:05:33,096 DEBUG chr16:56078751-59862001: Successfully fit background model for 3,373,190 bp. Use segment r for 0 bp 2025-01-31 10:05:33,527 DEBUG chr16:59862001-64138751: Successfully fit background model for 3,806,731 bp. Use segment r for 0 bp 2025-01-31 10:05:36,617 DEBUG chr16:64138751-89762751: Successfully fit background model for 23,344,906 bp. Use segment r for 0 bp 2025-01-31 10:05:37,055 DEBUG chr16:89762751-94467251: Successfully fit background model for 4,562,312 bp. Use segment r for 0 bp 2025-01-31 10:05:37,399 DEBUG chr16:94467251-98207768: Successfully fit background model for 3,481,502 bp. Use segment r for 0 bp 2025-01-31 10:05:43,364 DEBUG chr17:3000000-15982751: Successfully fit background model for 10,950,076 bp. Use segment r for 0 bp 2025-01-31 10:05:43,550 DEBUG chr17:15982751-17927251: Successfully fit background model for 1,586,544 bp. Use segment r for 0 bp 2025-01-31 10:05:43,800 DEBUG chr17:17927251-20595251: Successfully fit background model for 2,386,381 bp. Use segment r for 0 bp 2025-01-31 10:05:44,182 DEBUG chr17:20595251-23530001: Successfully fit background model for 2,237,845 bp. Use segment r for 1,104 bp 2025-01-31 10:05:44,730 DEBUG chr17:23530001-29327751: Successfully fit background model for 5,610,442 bp. Use segment r for 0 bp 2025-01-31 10:05:45,113 DEBUG chr17:29327751-33816751: Successfully fit background model for 4,209,313 bp. Use segment r for 0 bp 2025-01-31 10:05:45,156 DEBUG chr17:33816751-34135751: Successfully fit background model for 301,721 bp. Use segment r for 0 bp 2025-01-31 10:05:45,207 DEBUG chr17:34135751-34570251: Successfully fit background model for 401,718 bp. Use segment r for 0 bp 2025-01-31 10:05:45,354 DEBUG chr17:34570251-36035751: Successfully fit background model for 1,320,456 bp. Use segment r for 0 bp 2025-01-31 10:05:45,449 DEBUG chr17:36035751-37024751: Successfully fit background model for 852,570 bp. Use segment r for 0 bp 2025-01-31 10:05:46,128 DEBUG chr17:37024751-44271751: Successfully fit background model for 6,339,321 bp. Use segment r for 0 bp 2025-01-31 10:05:46,253 DEBUG chr17:44271751-45543251: Successfully fit background model for 1,224,135 bp. Use segment r for 0 bp 2025-01-31 10:05:46,570 DEBUG chr17:45543251-48623251: Successfully fit background model for 2,981,345 bp. Use segment r for 0 bp 2025-01-31 10:05:47,484 DEBUG chr17:48623251-55931251: Successfully fit background model for 6,670,550 bp. Use segment r for 0 bp 2025-01-31 10:05:47,618 DEBUG chr17:55931251-57351251: Successfully fit background model for 1,390,867 bp. Use segment r for 0 bp 2025-01-31 10:05:48,043 DEBUG chr17:57351251-62369251: Successfully fit background model for 4,513,783 bp. Use segment r for 0 bp 2025-01-31 10:05:49,448 DEBUG chr17:62369251-75817251: Successfully fit background model for 12,633,161 bp. Use segment r for 0 bp 2025-01-31 10:05:49,647 DEBUG chr17:75817251-77844251: Successfully fit background model for 1,841,684 bp. Use segment r for 0 bp 2025-01-31 10:05:50,232 DEBUG chr17:77844251-84000251: Successfully fit background model for 5,788,031 bp. Use segment r for 0 bp 2025-01-31 10:05:50,719 DEBUG chr17:84000251-89272251: Successfully fit background model for 5,082,390 bp. Use segment r for 0 bp 2025-01-31 10:05:51,226 DEBUG chr17:89272251-94987271: Successfully fit background model for 5,080,459 bp. Use segment r for 0 bp 2025-01-31 10:06:26,643 DEBUG chr18:3000500-4919251: Successfully fit background model for 1,653,550 bp. Use segment r for 0 bp 2025-01-31 10:06:26,916 DEBUG chr18:4919251-7955251: Successfully fit background model for 2,731,384 bp. Use segment r for 0 bp 2025-01-31 10:06:27,052 DEBUG chr18:7955251-9449251: Successfully fit background model for 1,317,175 bp. Use segment r for 0 bp 2025-01-31 10:06:27,389 DEBUG chr19:3080000-5364251: Successfully fit background model for 2,154,499 bp. Use segment r for 0 bp 2025-01-31 10:06:27,586 DEBUG chr19:5364251-7497751: Successfully fit background model for 1,960,870 bp. Use segment r for 0 bp 2025-01-31 10:06:27,623 DEBUG chr18:9449251-15610251: Successfully fit background model for 5,746,429 bp. Use segment r for 0 bp 2025-01-31 10:06:27,700 DEBUG chr19:7497751-8695251: Successfully fit background model for 951,891 bp. Use segment r for 0 bp 2025-01-31 10:06:27,744 DEBUG chr19:8695251-9110751: Successfully fit background model for 403,461 bp. Use segment r for 0 bp 2025-01-31 10:06:27,951 DEBUG chr19:9110751-10983751: Successfully fit background model for 1,530,028 bp. Use segment r for 0 bp 2025-01-31 10:06:27,968 DEBUG chr18:15610251-19437751: Successfully fit background model for 3,426,720 bp. Use segment r for 0 bp 2025-01-31 10:06:28,012 DEBUG chr19:10983751-11602251: Successfully fit background model for 543,974 bp. Use segment r for 0 bp 2025-01-31 10:06:28,053 DEBUG chr19:11602251-12016251: Successfully fit background model for 392,140 bp. Use segment r for 0 bp 2025-01-31 10:06:28,372 DEBUG chr19:12016251-15466751: Successfully fit background model for 3,120,608 bp. Use segment r for 0 bp 2025-01-31 10:06:28,551 DEBUG chr19:15466751-17415001: Successfully fit background model for 1,867,364 bp. Use segment r for 0 bp 2025-01-31 10:06:28,622 DEBUG chr18:19437751-26183251: Successfully fit background model for 6,240,745 bp. Use segment r for 0 bp 2025-01-31 10:06:29,062 DEBUG chr19:17415001-22688251: Successfully fit background model for 4,910,297 bp. Use segment r for 0 bp 2025-01-31 10:06:29,098 DEBUG chr18:26183251-31609251: Successfully fit background model for 5,007,192 bp. Use segment r for 0 bp 2025-01-31 10:06:29,278 DEBUG chr19:22688251-25118251: Successfully fit background model for 2,344,137 bp. Use segment r for 0 bp 2025-01-31 10:06:29,352 DEBUG chr18:31609251-34324751: Successfully fit background model for 2,514,875 bp. Use segment r for 0 bp 2025-01-31 10:06:29,491 DEBUG chr19:25118251-27592751: Successfully fit background model for 2,340,855 bp. Use segment r for 0 bp 2025-01-31 10:06:29,565 DEBUG chr18:34324751-36803751: Successfully fit background model for 2,421,613 bp. Use segment r for 0 bp 2025-01-31 10:06:29,730 DEBUG chr19:27592751-30222751: Successfully fit background model for 2,545,049 bp. Use segment r for 0 bp 2025-01-31 10:06:29,813 DEBUG chr18:36803751-39466251: Successfully fit background model for 2,504,543 bp. Use segment r for 0 bp 2025-01-31 10:06:29,851 DEBUG chr19:30222751-31479251: Successfully fit background model for 1,191,602 bp. Use segment r for 0 bp 2025-01-31 10:06:29,971 DEBUG chr19:31479251-32797251: Successfully fit background model for 1,241,668 bp. Use segment r for 0 bp 2025-01-31 10:06:30,218 DEBUG chr19:32797251-35670001: Successfully fit background model for 2,554,772 bp. Use segment r for 0 bp 2025-01-31 10:06:30,461 DEBUG chr18:39466251-46517251: Successfully fit background model for 6,472,042 bp. Use segment r for 0 bp 2025-01-31 10:06:30,519 DEBUG chr19:35670001-39057751: Successfully fit background model for 3,248,509 bp. Use segment r for 0 bp 2025-01-31 10:06:30,550 DEBUG chr18:46517251-47372251: Successfully fit background model for 814,772 bp. Use segment r for 0 bp 2025-01-31 10:06:30,651 DEBUG chr19:39057751-40475751: Successfully fit background model for 1,123,176 bp. Use segment r for 0 bp 2025-01-31 10:06:30,760 DEBUG chr18:47372251-49747251: Successfully fit background model for 2,175,145 bp. Use segment r for 0 bp 2025-01-31 10:06:31,318 DEBUG chr19:40475751-47895751: Successfully fit background model for 7,162,162 bp. Use segment r for 0 bp 2025-01-31 10:06:31,418 DEBUG chr19:47895751-48821251: Successfully fit background model for 897,184 bp. Use segment r for 0 bp 2025-01-31 10:06:31,695 DEBUG chr19:48821251-51646001: Successfully fit background model for 2,607,453 bp. Use segment r for 0 bp 2025-01-31 10:06:31,844 DEBUG chr19:51646001-53247751: Successfully fit background model for 1,485,428 bp. Use segment r for 0 bp 2025-01-31 10:06:31,892 DEBUG chr18:49747251-60478751: Successfully fit background model for 9,943,777 bp. Use segment r for 0 bp 2025-01-31 10:06:31,904 DEBUG chr19:53247751-53818251: Successfully fit background model for 553,354 bp. Use segment r for 0 bp 2025-01-31 10:06:32,043 DEBUG chr18:60478751-61929751: Successfully fit background model for 1,424,415 bp. Use segment r for 0 bp 2025-01-31 10:06:32,568 DEBUG chr18:61929751-67203751: Successfully fit background model for 5,029,885 bp. Use segment r for 0 bp 2025-01-31 10:06:32,637 DEBUG chr19:53818251-61431566: Successfully fit background model for 7,216,256 bp. Use segment r for 0 bp 2025-01-31 10:06:32,666 DEBUG chr18:67203751-68189251: Successfully fit background model for 957,717 bp. Use segment r for 0 bp 2025-01-31 10:06:32,870 DEBUG chr18:68189251-70469251: Successfully fit background model for 2,161,870 bp. Use segment r for 0 bp 2025-01-31 10:06:32,894 DEBUG chr18:70469251-70658251: Successfully fit background model for 172,194 bp. Use segment r for 0 bp 2025-01-31 10:06:33,179 DEBUG chr18:70658251-73748251: Successfully fit background model for 2,821,021 bp. Use segment r for 0 bp 2025-01-31 10:06:34,373 DEBUG chr18:73748251-84847251: Successfully fit background model for 10,460,074 bp. Use segment r for 0 bp 2025-01-31 10:06:34,901 DEBUG chr18:84847251-90702639: Successfully fit background model for 4,983,047 bp. Use segment r for 0 bp 2025-01-31 10:07:36,595 DEBUG Results of fit_per_bp_model emitted. 2025-01-31 10:07:36,596 INFO Calculating per-bp p-values 2025-01-31 10:07:36,598 DEBUG Using 6 CPUs to calc_pvals 2025-01-31 10:07:36,654 DEBUG chr1: Calculating p-values 2025-01-31 10:07:36,659 DEBUG chr5: Calculating p-values 2025-01-31 10:07:36,659 DEBUG chr4: Calculating p-values 2025-01-31 10:07:36,660 DEBUG chr2: Calculating p-values 2025-01-31 10:07:36,660 DEBUG chr3: Calculating p-values 2025-01-31 10:07:36,660 DEBUG chrX: Calculating p-values 2025-01-31 10:08:05,716 DEBUG Saving p-values for chrX 2025-01-31 10:08:09,952 DEBUG Saving p-values for chr3 2025-01-31 10:08:12,602 DEBUG Saving p-values for chr5 2025-01-31 10:08:13,207 DEBUG Saving p-values for chr4 2025-01-31 10:08:19,863 DEBUG Saving p-values for chr2 2025-01-31 10:08:22,774 DEBUG Saving p-values for chr1 2025-01-31 10:08:33,898 DEBUG chr6: Calculating p-values 2025-01-31 10:08:36,112 DEBUG chr7: Calculating p-values 2025-01-31 10:08:39,895 DEBUG chr10: Calculating p-values 2025-01-31 10:08:40,180 DEBUG chr8: Calculating p-values 2025-01-31 10:08:52,834 DEBUG chr14: Calculating p-values 2025-01-31 10:09:00,571 DEBUG Saving p-values for chr6 2025-01-31 10:09:03,048 DEBUG chr9: Calculating p-values 2025-01-31 10:09:06,007 DEBUG Saving p-values for chr10 2025-01-31 10:09:07,743 DEBUG Saving p-values for chr8 2025-01-31 10:09:09,034 DEBUG Saving p-values for chr7 2025-01-31 10:09:14,595 DEBUG Saving p-values for chr14 2025-01-31 10:09:23,914 DEBUG chr11: Calculating p-values 2025-01-31 10:09:28,245 DEBUG chr13: Calculating p-values 2025-01-31 10:09:29,629 DEBUG Saving p-values for chr9 2025-01-31 10:09:32,184 DEBUG chr12: Calculating p-values 2025-01-31 10:09:34,786 DEBUG chr15: Calculating p-values 2025-01-31 10:09:35,631 DEBUG chr16: Calculating p-values 2025-01-31 10:09:52,473 DEBUG Saving p-values for chr12 2025-01-31 10:09:54,789 DEBUG Saving p-values for chr11 2025-01-31 10:09:54,875 DEBUG Saving p-values for chr16 2025-01-31 10:09:57,389 DEBUG Saving p-values for chr13 2025-01-31 10:09:59,399 DEBUG chr17: Calculating p-values 2025-01-31 10:10:00,035 DEBUG Saving p-values for chr15 2025-01-31 10:10:09,881 DEBUG chrY: Calculating p-values 2025-01-31 10:10:12,290 DEBUG chr18: Calculating p-values 2025-01-31 10:10:14,126 DEBUG chr19: Calculating p-values 2025-01-31 10:10:19,227 DEBUG Saving p-values for chr17 2025-01-31 10:10:26,327 DEBUG Saving p-values for chr18 2025-01-31 10:10:26,554 DEBUG Saving p-values for chr19 2025-01-31 10:10:41,223 DEBUG Results of calc_pvals emitted. 2025-01-31 10:10:41,224 INFO Converting threshold values to bigwig 2025-01-31 10:10:41,224 DEBUG Using 6 CPUs to extract_fit_threholds 2025-01-31 10:10:55,268 DEBUG Results of extract_fit_threholds emitted. 2025-01-31 10:11:27,449 INFO Converting background quantile values to bigwig 2025-01-31 10:11:27,449 DEBUG Using 6 CPUs to extract_bg_quantile 2025-01-31 10:12:01,543 DEBUG Results of extract_bg_quantile emitted. 2025-01-31 10:12:29,934 INFO Calculating per-bp FDRs 2025-01-31 10:12:29,936 DEBUG AG81946: Extracting raw P-values 2025-01-31 10:13:07,142 DEBUG AG81946: Computing FDR 2025-01-31 10:13:25,567 DEBUG AG81946: Saving FDRs to parquet 2025-01-31 10:14:40,876 INFO Calling peaks and hotspots at FDRs: [0.05, 0.01, 0.001] 2025-01-31 10:14:40,879 DEBUG Calling hotspots at FDR=0.05 2025-01-31 10:14:40,879 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:14:44,335 DEBUG chr5: Calling hotspots 2025-01-31 10:14:44,738 DEBUG chr3: Calling hotspots 2025-01-31 10:14:44,965 DEBUG chr4: Calling hotspots 2025-01-31 10:14:45,147 DEBUG chrX: Calling hotspots 2025-01-31 10:14:45,411 DEBUG chr2: Calling hotspots 2025-01-31 10:14:45,630 DEBUG chr1: Calling hotspots 2025-01-31 10:14:50,697 DEBUG chr5: 4666 hotspots called 2025-01-31 10:14:51,173 DEBUG chr3: 3756 hotspots called 2025-01-31 10:14:51,868 DEBUG chr4: 4719 hotspots called 2025-01-31 10:14:52,942 DEBUG chrX: 2240 hotspots called 2025-01-31 10:14:53,915 DEBUG chr6: Calling hotspots 2025-01-31 10:14:54,184 DEBUG chr1: 4920 hotspots called 2025-01-31 10:14:54,197 DEBUG chr2: 5787 hotspots called 2025-01-31 10:14:54,314 DEBUG chr7: Calling hotspots 2025-01-31 10:14:54,707 DEBUG chr10: Calling hotspots 2025-01-31 10:14:55,709 DEBUG chr8: Calling hotspots 2025-01-31 10:14:56,810 DEBUG chr9: Calling hotspots 2025-01-31 10:14:56,968 DEBUG chr14: Calling hotspots 2025-01-31 10:14:59,752 DEBUG chr6: 3739 hotspots called 2025-01-31 10:14:59,781 DEBUG chr7: 4588 hotspots called 2025-01-31 10:14:59,782 DEBUG chr10: 3454 hotspots called 2025-01-31 10:15:00,713 DEBUG chr8: 3433 hotspots called 2025-01-31 10:15:02,006 DEBUG chr9: 4087 hotspots called 2025-01-31 10:15:02,342 DEBUG chr13: Calling hotspots 2025-01-31 10:15:02,673 DEBUG chr14: 2462 hotspots called 2025-01-31 10:15:02,678 DEBUG chr11: Calling hotspots 2025-01-31 10:15:02,751 DEBUG chr12: Calling hotspots 2025-01-31 10:15:03,193 DEBUG chr15: Calling hotspots 2025-01-31 10:15:03,950 DEBUG chr16: Calling hotspots 2025-01-31 10:15:04,241 DEBUG chr17: Calling hotspots 2025-01-31 10:15:08,152 DEBUG chr15: 2900 hotspots called 2025-01-31 10:15:08,449 DEBUG chr13: 3458 hotspots called 2025-01-31 10:15:08,480 DEBUG chr16: 2428 hotspots called 2025-01-31 10:15:08,534 DEBUG chr17: 3109 hotspots called 2025-01-31 10:15:08,535 DEBUG chr12: 2730 hotspots called 2025-01-31 10:15:08,702 DEBUG chr11: 5396 hotspots called 2025-01-31 10:15:09,394 DEBUG chr19: Calling hotspots 2025-01-31 10:15:09,575 DEBUG chr18: Calling hotspots 2025-01-31 10:15:11,768 DEBUG chr19: 2390 hotspots called 2025-01-31 10:15:12,797 DEBUG chr18: 1976 hotspots called 2025-01-31 10:15:13,207 DEBUG Results of call_hotspots emitted. 2025-01-31 10:15:13,248 INFO There are 72238 hotspots called at FDR=0.05 2025-01-31 10:15:16,835 DEBUG Calling variable width peaks at FDR=0.05 2025-01-31 10:15:16,836 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:15:26,512 DEBUG chr3: Calling peaks at FDR=0.05 2025-01-31 10:15:27,938 DEBUG chr5: Calling peaks at FDR=0.05 2025-01-31 10:15:28,482 DEBUG chrX: Calling peaks at FDR=0.05 2025-01-31 10:15:28,514 DEBUG chr4: Calling peaks at FDR=0.05 2025-01-31 10:15:29,657 DEBUG chr2: Calling peaks at FDR=0.05 2025-01-31 10:15:30,177 DEBUG chr1: Calling peaks at FDR=0.05 2025-01-31 10:15:33,329 DEBUG chr3: 4506 peaks called 2025-01-31 10:15:37,234 DEBUG chr5: 5590 peaks called 2025-01-31 10:15:37,988 DEBUG chr4: 5692 peaks called 2025-01-31 10:15:38,850 DEBUG chrX: 2582 peaks called 2025-01-31 10:15:39,938 DEBUG chr2: 6939 peaks called 2025-01-31 10:15:42,627 DEBUG chr6: Calling peaks at FDR=0.05 2025-01-31 10:15:43,939 DEBUG chr1: 5789 peaks called 2025-01-31 10:15:45,559 DEBUG chr7: Calling peaks at FDR=0.05 2025-01-31 10:15:45,820 DEBUG chr10: Calling peaks at FDR=0.05 2025-01-31 10:15:47,214 DEBUG chr14: Calling peaks at FDR=0.05 2025-01-31 10:15:47,322 DEBUG chr8: Calling peaks at FDR=0.05 2025-01-31 10:15:51,033 DEBUG chr9: Calling peaks at FDR=0.05 2025-01-31 10:15:52,922 DEBUG chr6: 4463 peaks called 2025-01-31 10:15:53,294 DEBUG chr10: 4188 peaks called 2025-01-31 10:15:53,402 DEBUG chr7: 5688 peaks called 2025-01-31 10:15:54,023 DEBUG chr8: 4200 peaks called 2025-01-31 10:15:54,208 DEBUG chr14: 2909 peaks called 2025-01-31 10:15:56,755 DEBUG chr9: 4881 peaks called 2025-01-31 10:15:59,789 DEBUG chr15: Calling peaks at FDR=0.05 2025-01-31 10:16:00,037 DEBUG chr12: Calling peaks at FDR=0.05 2025-01-31 10:16:00,058 DEBUG chr11: Calling peaks at FDR=0.05 2025-01-31 10:16:00,099 DEBUG chr16: Calling peaks at FDR=0.05 2025-01-31 10:16:00,848 DEBUG chr13: Calling peaks at FDR=0.05 2025-01-31 10:16:01,530 DEBUG chr17: Calling peaks at FDR=0.05 2025-01-31 10:16:09,154 DEBUG chr15: 3504 peaks called 2025-01-31 10:16:09,322 DEBUG chr16: 2898 peaks called 2025-01-31 10:16:10,156 DEBUG chr17: 3917 peaks called 2025-01-31 10:16:10,543 DEBUG chr12: 3249 peaks called 2025-01-31 10:16:10,982 DEBUG chr13: 4186 peaks called 2025-01-31 10:16:11,089 DEBUG chr11: 6817 peaks called 2025-01-31 10:16:12,343 DEBUG chr19: Calling peaks at FDR=0.05 2025-01-31 10:16:12,547 DEBUG chr18: Calling peaks at FDR=0.05 2025-01-31 10:16:14,335 DEBUG chr19: 2979 peaks called 2025-01-31 10:16:15,267 DEBUG chr18: 2313 peaks called 2025-01-31 10:16:16,226 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:16:16,262 INFO There are 87290 peaks called at FDR=0.05 2025-01-31 10:16:17,834 DEBUG Calling hotspots at FDR=0.01 2025-01-31 10:16:17,834 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:16:21,719 DEBUG chr4: Calling hotspots 2025-01-31 10:16:21,775 DEBUG chr3: Calling hotspots 2025-01-31 10:16:21,894 DEBUG chr5: Calling hotspots 2025-01-31 10:16:22,328 DEBUG chrX: Calling hotspots 2025-01-31 10:16:22,567 DEBUG chr2: Calling hotspots 2025-01-31 10:16:22,848 DEBUG chr1: Calling hotspots 2025-01-31 10:16:29,854 DEBUG chr5: 3881 hotspots called 2025-01-31 10:16:29,879 DEBUG chr4: 3958 hotspots called 2025-01-31 10:16:30,469 DEBUG chr3: 3014 hotspots called 2025-01-31 10:16:31,200 DEBUG chrX: 1719 hotspots called 2025-01-31 10:16:32,235 DEBUG chr2: 4770 hotspots called 2025-01-31 10:16:32,995 DEBUG chr1: 3899 hotspots called 2025-01-31 10:16:33,022 DEBUG chr7: Calling hotspots 2025-01-31 10:16:33,326 DEBUG chr6: Calling hotspots 2025-01-31 10:16:33,427 DEBUG chr10: Calling hotspots 2025-01-31 10:16:33,891 DEBUG chr8: Calling hotspots 2025-01-31 10:16:35,054 DEBUG chr14: Calling hotspots 2025-01-31 10:16:35,618 DEBUG chr9: Calling hotspots 2025-01-31 10:16:40,320 DEBUG chr7: 3868 hotspots called 2025-01-31 10:16:40,325 DEBUG chr10: 2834 hotspots called 2025-01-31 10:16:40,351 DEBUG chr8: 2845 hotspots called 2025-01-31 10:16:40,807 DEBUG chr14: 1950 hotspots called 2025-01-31 10:16:41,018 DEBUG chr6: 2978 hotspots called 2025-01-31 10:16:41,136 DEBUG chr9: 3356 hotspots called 2025-01-31 10:16:42,956 DEBUG chr12: Calling hotspots 2025-01-31 10:16:43,028 DEBUG chr13: Calling hotspots 2025-01-31 10:16:43,035 DEBUG chr11: Calling hotspots 2025-01-31 10:16:43,071 DEBUG chr15: Calling hotspots 2025-01-31 10:16:43,180 DEBUG chr16: Calling hotspots 2025-01-31 10:16:43,261 DEBUG chr17: Calling hotspots 2025-01-31 10:16:53,788 DEBUG chr17: 2665 hotspots called 2025-01-31 10:16:54,103 DEBUG chr16: 1944 hotspots called 2025-01-31 10:16:54,448 DEBUG chr15: 2332 hotspots called 2025-01-31 10:16:55,567 DEBUG chr19: Calling hotspots 2025-01-31 10:16:55,883 DEBUG chr18: Calling hotspots 2025-01-31 10:16:55,928 DEBUG chr12: 2213 hotspots called 2025-01-31 10:16:55,998 DEBUG chr11: 4661 hotspots called 2025-01-31 10:16:56,068 DEBUG chr13: 2823 hotspots called 2025-01-31 10:17:00,078 DEBUG chr19: 2015 hotspots called 2025-01-31 10:17:02,265 DEBUG chr18: 1586 hotspots called 2025-01-31 10:17:03,446 DEBUG Results of call_hotspots emitted. 2025-01-31 10:17:03,473 INFO There are 59311 hotspots called at FDR=0.01 2025-01-31 10:17:06,556 DEBUG Calling variable width peaks at FDR=0.01 2025-01-31 10:17:06,556 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:17:18,386 DEBUG chr3: Calling peaks at FDR=0.01 2025-01-31 10:17:18,559 DEBUG chr5: Calling peaks at FDR=0.01 2025-01-31 10:17:19,352 DEBUG chrX: Calling peaks at FDR=0.01 2025-01-31 10:17:19,428 DEBUG chr4: Calling peaks at FDR=0.01 2025-01-31 10:17:20,079 DEBUG chr2: Calling peaks at FDR=0.01 2025-01-31 10:17:21,011 DEBUG chr1: Calling peaks at FDR=0.01 2025-01-31 10:17:32,229 DEBUG chr5: 4674 peaks called 2025-01-31 10:17:32,842 DEBUG chr3: 3669 peaks called 2025-01-31 10:17:32,940 DEBUG chr4: 4801 peaks called 2025-01-31 10:17:33,676 DEBUG chrX: 2052 peaks called 2025-01-31 10:17:35,968 DEBUG chr2: 5779 peaks called 2025-01-31 10:17:39,313 DEBUG chr1: 4714 peaks called 2025-01-31 10:17:41,219 DEBUG chr7: Calling peaks at FDR=0.01 2025-01-31 10:17:41,854 DEBUG chr10: Calling peaks at FDR=0.01 2025-01-31 10:17:41,902 DEBUG chr6: Calling peaks at FDR=0.01 2025-01-31 10:17:42,705 DEBUG chr8: Calling peaks at FDR=0.01 2025-01-31 10:17:44,102 DEBUG chr14: Calling peaks at FDR=0.01 2025-01-31 10:17:47,572 DEBUG chr9: Calling peaks at FDR=0.01 2025-01-31 10:17:58,797 DEBUG chr10: 3472 peaks called 2025-01-31 10:18:00,347 DEBUG chr8: 3524 peaks called 2025-01-31 10:18:00,616 DEBUG chr14: 2350 peaks called 2025-01-31 10:18:00,742 DEBUG chr7: 4863 peaks called 2025-01-31 10:18:00,869 DEBUG chr6: 3603 peaks called 2025-01-31 10:18:01,102 DEBUG chr9: 4055 peaks called 2025-01-31 10:18:06,986 DEBUG chr11: Calling peaks at FDR=0.01 2025-01-31 10:18:07,304 DEBUG chr15: Calling peaks at FDR=0.01 2025-01-31 10:18:07,392 DEBUG chr17: Calling peaks at FDR=0.01 2025-01-31 10:18:07,810 DEBUG chr16: Calling peaks at FDR=0.01 2025-01-31 10:18:08,007 DEBUG chr13: Calling peaks at FDR=0.01 2025-01-31 10:18:08,220 DEBUG chr12: Calling peaks at FDR=0.01 2025-01-31 10:18:19,258 DEBUG chr17: 3348 peaks called 2025-01-31 10:18:19,804 DEBUG chr15: 2867 peaks called 2025-01-31 10:18:19,806 DEBUG chr16: 2369 peaks called 2025-01-31 10:18:20,490 DEBUG chr11: 5868 peaks called 2025-01-31 10:18:20,806 DEBUG chr13: 3471 peaks called 2025-01-31 10:18:20,961 DEBUG chr12: 2709 peaks called 2025-01-31 10:18:22,489 DEBUG chr19: Calling peaks at FDR=0.01 2025-01-31 10:18:22,909 DEBUG chr18: Calling peaks at FDR=0.01 2025-01-31 10:18:24,347 DEBUG chr19: 2521 peaks called 2025-01-31 10:18:25,842 DEBUG chr18: 1890 peaks called 2025-01-31 10:18:26,932 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:18:26,978 INFO There are 72599 peaks called at FDR=0.01 2025-01-31 10:18:28,319 DEBUG Calling hotspots at FDR=0.001 2025-01-31 10:18:28,319 DEBUG Using 6 CPUs to call_hotspots 2025-01-31 10:18:32,469 DEBUG chr5: Calling hotspots 2025-01-31 10:18:32,595 DEBUG chr4: Calling hotspots 2025-01-31 10:18:32,704 DEBUG chr3: Calling hotspots 2025-01-31 10:18:33,020 DEBUG chr2: Calling hotspots 2025-01-31 10:18:33,090 DEBUG chrX: Calling hotspots 2025-01-31 10:18:33,848 DEBUG chr1: Calling hotspots 2025-01-31 10:18:42,268 DEBUG chr5: 3303 hotspots called 2025-01-31 10:18:42,918 DEBUG chr4: 3380 hotspots called 2025-01-31 10:18:43,223 DEBUG chr3: 2550 hotspots called 2025-01-31 10:18:44,201 DEBUG chrX: 1467 hotspots called 2025-01-31 10:18:44,924 DEBUG chr2: 4119 hotspots called 2025-01-31 10:18:45,242 DEBUG chr6: Calling hotspots 2025-01-31 10:18:46,118 DEBUG chr7: Calling hotspots 2025-01-31 10:18:46,169 DEBUG chr1: 3306 hotspots called 2025-01-31 10:18:46,277 DEBUG chr10: Calling hotspots 2025-01-31 10:18:47,199 DEBUG chr8: Calling hotspots 2025-01-31 10:18:47,624 DEBUG chr14: Calling hotspots 2025-01-31 10:18:49,129 DEBUG chr9: Calling hotspots 2025-01-31 10:18:51,060 DEBUG chr6: 2534 hotspots called 2025-01-31 10:18:52,272 DEBUG chr10: 2418 hotspots called 2025-01-31 10:18:52,755 DEBUG chr7: 3348 hotspots called 2025-01-31 10:18:53,205 DEBUG chr14: 1654 hotspots called 2025-01-31 10:18:53,281 DEBUG chr8: 2488 hotspots called 2025-01-31 10:18:53,720 DEBUG chr11: Calling hotspots 2025-01-31 10:18:54,447 DEBUG chr9: 2880 hotspots called 2025-01-31 10:18:55,278 DEBUG chr13: Calling hotspots 2025-01-31 10:18:55,430 DEBUG chr15: Calling hotspots 2025-01-31 10:18:55,457 DEBUG chr16: Calling hotspots 2025-01-31 10:18:55,627 DEBUG chr12: Calling hotspots 2025-01-31 10:18:56,239 DEBUG chr17: Calling hotspots 2025-01-31 10:19:00,734 DEBUG chr11: 4076 hotspots called 2025-01-31 10:19:01,317 DEBUG chr16: 1661 hotspots called 2025-01-31 10:19:01,836 DEBUG chr15: 1998 hotspots called 2025-01-31 10:19:02,587 DEBUG chr17: 2291 hotspots called 2025-01-31 10:19:02,858 DEBUG chr19: Calling hotspots 2025-01-31 10:19:02,894 DEBUG chr18: Calling hotspots 2025-01-31 10:19:03,413 DEBUG chr13: 2400 hotspots called 2025-01-31 10:19:04,050 DEBUG chr12: 1897 hotspots called 2025-01-31 10:19:07,054 DEBUG chr19: 1744 hotspots called 2025-01-31 10:19:08,949 DEBUG chr18: 1313 hotspots called 2025-01-31 10:19:09,760 DEBUG Results of call_hotspots emitted. 2025-01-31 10:19:09,793 INFO There are 50827 hotspots called at FDR=0.001 2025-01-31 10:19:12,354 DEBUG Calling variable width peaks at FDR=0.001 2025-01-31 10:19:12,355 DEBUG Using 6 CPUs to call_variable_width_peaks 2025-01-31 10:19:23,097 DEBUG chr3: Calling peaks at FDR=0.001 2025-01-31 10:19:23,156 DEBUG chr5: Calling peaks at FDR=0.001 2025-01-31 10:19:23,799 DEBUG chrX: Calling peaks at FDR=0.001 2025-01-31 10:19:23,915 DEBUG chr4: Calling peaks at FDR=0.001 2025-01-31 10:19:24,870 DEBUG chr2: Calling peaks at FDR=0.001 2025-01-31 10:19:25,065 DEBUG chr1: Calling peaks at FDR=0.001 2025-01-31 10:19:39,675 DEBUG chr5: 3963 peaks called 2025-01-31 10:19:40,125 DEBUG chr3: 3113 peaks called 2025-01-31 10:19:40,159 DEBUG chr4: 4059 peaks called 2025-01-31 10:19:40,441 DEBUG chrX: 1738 peaks called 2025-01-31 10:19:41,153 DEBUG chr2: 4948 peaks called 2025-01-31 10:19:42,916 DEBUG chr1: 4011 peaks called 2025-01-31 10:19:47,585 DEBUG chr14: Calling peaks at FDR=0.001 2025-01-31 10:19:47,970 DEBUG chr8: Calling peaks at FDR=0.001 2025-01-31 10:19:49,302 DEBUG chr6: Calling peaks at FDR=0.001 2025-01-31 10:19:49,590 DEBUG chr10: Calling peaks at FDR=0.001 2025-01-31 10:19:49,637 DEBUG chr7: Calling peaks at FDR=0.001 2025-01-31 10:19:51,833 DEBUG chr9: Calling peaks at FDR=0.001 2025-01-31 10:19:59,336 DEBUG chr14: 1983 peaks called 2025-01-31 10:19:59,705 DEBUG chr8: 3042 peaks called 2025-01-31 10:20:00,472 DEBUG chr10: 2952 peaks called 2025-01-31 10:20:01,683 DEBUG chr9: 3473 peaks called 2025-01-31 10:20:02,091 DEBUG chr6: 3064 peaks called 2025-01-31 10:20:02,675 DEBUG chr7: 4154 peaks called 2025-01-31 10:20:07,233 DEBUG chr12: Calling peaks at FDR=0.001 2025-01-31 10:20:07,245 DEBUG chr11: Calling peaks at FDR=0.001 2025-01-31 10:20:07,324 DEBUG chr15: Calling peaks at FDR=0.001 2025-01-31 10:20:07,333 DEBUG chr13: Calling peaks at FDR=0.001 2025-01-31 10:20:07,868 DEBUG chr16: Calling peaks at FDR=0.001 2025-01-31 10:20:08,139 DEBUG chr17: Calling peaks at FDR=0.001 2025-01-31 10:20:11,557 DEBUG chr15: 2433 peaks called 2025-01-31 10:20:12,633 DEBUG chr12: 2299 peaks called 2025-01-31 10:20:12,908 DEBUG chr16: 2016 peaks called 2025-01-31 10:20:13,049 DEBUG chr17: 2872 peaks called 2025-01-31 10:20:13,323 DEBUG chr11: 5065 peaks called 2025-01-31 10:20:13,346 DEBUG chr13: 2944 peaks called 2025-01-31 10:20:14,829 DEBUG chr19: Calling peaks at FDR=0.001 2025-01-31 10:20:15,262 DEBUG chr18: Calling peaks at FDR=0.001 2025-01-31 10:20:16,849 DEBUG chr19: 2163 peaks called 2025-01-31 10:20:18,364 DEBUG chr18: 1571 peaks called 2025-01-31 10:20:19,112 DEBUG Results of call_variable_width_peaks emitted. 2025-01-31 10:20:19,147 INFO There are 61863 peaks called at FDR=0.001 2025-01-31 10:20:20,216 INFO Saving density 2025-01-31 10:20:20,216 DEBUG Using 6 CPUs to extract_normalized_density 2025-01-31 10:20:36,625 DEBUG Results of extract_normalized_density emitted. 2025-01-31 10:20:40,885 DEBUG Converting density to bigwig 2025-01-31 10:21:35,416 INFO Program finished